Query 004496
Match_columns 748
No_of_seqs 496 out of 1963
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 00:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02106 choline dehydrogenase 100.0 1.9E-63 4.2E-68 574.6 38.5 470 234-739 3-535 (560)
2 TIGR01810 betA choline dehydro 100.0 2.1E-62 4.6E-67 563.0 37.7 466 238-737 1-528 (532)
3 KOG1238 Glucose dehydrogenase/ 100.0 1.9E-60 4.2E-65 523.4 34.3 483 233-744 54-617 (623)
4 COG2303 BetA Choline dehydroge 100.0 7.4E-57 1.6E-61 512.9 33.2 470 233-737 4-535 (542)
5 PLN02785 Protein HOTHEAD 100.0 2.5E-52 5.3E-57 478.3 37.9 461 233-739 52-580 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 1.8E-48 3.8E-53 437.5 40.1 448 237-739 1-543 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 7E-41 1.5E-45 357.3 13.7 258 237-504 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 99.9 2.5E-27 5.4E-32 225.0 11.5 131 586-731 1-144 (144)
9 PF00890 FAD_binding_2: FAD bi 99.5 3.2E-13 6.8E-18 151.4 13.9 67 411-487 143-209 (417)
10 PRK08274 tricarballylate dehyd 99.5 5E-13 1.1E-17 151.9 14.6 68 411-488 133-200 (466)
11 PRK06481 fumarate reductase fl 99.5 1.2E-12 2.5E-17 149.9 17.0 66 412-487 193-259 (506)
12 PRK07121 hypothetical protein; 99.4 1.3E-12 2.8E-17 149.4 16.6 66 412-487 180-246 (492)
13 PRK12845 3-ketosteroid-delta-1 99.4 3.8E-12 8.1E-17 146.8 17.4 62 413-485 221-283 (564)
14 PRK11101 glpA sn-glycerol-3-ph 99.4 4.8E-12 1E-16 146.0 16.9 81 411-501 151-234 (546)
15 PF01266 DAO: FAD dependent ox 99.4 2.8E-12 6.1E-17 139.8 14.1 67 410-492 148-214 (358)
16 PRK12835 3-ketosteroid-delta-1 99.4 5.4E-12 1.2E-16 146.4 16.7 60 418-487 222-283 (584)
17 PRK12837 3-ketosteroid-delta-1 99.4 6E-12 1.3E-16 144.3 16.5 65 413-488 177-244 (513)
18 PRK12844 3-ketosteroid-delta-1 99.4 1.1E-11 2.3E-16 143.4 17.4 63 414-487 213-276 (557)
19 PRK06452 sdhA succinate dehydr 99.4 7.6E-12 1.6E-16 144.8 16.2 59 413-480 140-198 (566)
20 PRK12834 putative FAD-binding 99.3 2.2E-11 4.7E-16 140.9 17.9 36 234-269 2-37 (549)
21 PTZ00306 NADH-dependent fumara 99.3 1E-11 2.2E-16 154.4 16.1 62 422-483 560-623 (1167)
22 PRK08958 sdhA succinate dehydr 99.3 1.3E-11 2.7E-16 143.4 15.1 61 413-481 147-207 (588)
23 PLN00128 Succinate dehydrogena 99.3 1.6E-11 3.5E-16 143.2 15.7 62 412-481 190-251 (635)
24 PRK07804 L-aspartate oxidase; 99.3 2.6E-11 5.6E-16 139.8 17.2 38 233-270 13-50 (541)
25 PTZ00139 Succinate dehydrogena 99.3 1.4E-11 3E-16 143.7 15.0 61 413-481 170-230 (617)
26 TIGR01813 flavo_cyto_c flavocy 99.3 1.8E-11 3.9E-16 138.1 15.3 68 411-487 132-199 (439)
27 PRK07573 sdhA succinate dehydr 99.3 1.5E-11 3.2E-16 144.0 15.0 55 418-481 179-233 (640)
28 PRK09078 sdhA succinate dehydr 99.3 2.4E-11 5.2E-16 141.5 15.5 61 413-481 153-213 (598)
29 PRK06175 L-aspartate oxidase; 99.3 1.9E-11 4.2E-16 137.0 13.8 58 413-481 132-190 (433)
30 COG2081 Predicted flavoprotein 99.3 3.7E-11 8.1E-16 127.2 13.8 168 235-482 2-169 (408)
31 PLN02815 L-aspartate oxidase 99.3 4.1E-11 9E-16 138.6 15.0 63 413-480 159-222 (594)
32 PRK06263 sdhA succinate dehydr 99.3 4.9E-11 1.1E-15 137.8 14.8 61 413-481 138-198 (543)
33 PRK05945 sdhA succinate dehydr 99.3 4.7E-11 1E-15 138.8 14.6 62 411-481 137-198 (575)
34 PRK07057 sdhA succinate dehydr 99.3 7.3E-11 1.6E-15 137.3 15.9 62 412-481 151-212 (591)
35 PRK08626 fumarate reductase fl 99.2 7.9E-11 1.7E-15 138.2 15.5 59 414-481 163-221 (657)
36 PRK07803 sdhA succinate dehydr 99.2 6.3E-11 1.4E-15 138.6 14.5 35 235-269 7-41 (626)
37 PRK12839 hypothetical protein; 99.2 1.1E-10 2.3E-15 135.2 16.1 65 413-486 218-282 (572)
38 PRK07843 3-ketosteroid-delta-1 99.2 1.3E-10 2.8E-15 134.5 16.8 60 418-488 217-277 (557)
39 COG0579 Predicted dehydrogenas 99.2 1.4E-10 3E-15 126.8 15.7 68 411-492 155-222 (429)
40 PRK07395 L-aspartate oxidase; 99.2 5.2E-11 1.1E-15 137.2 12.8 59 413-480 138-197 (553)
41 PRK06134 putative FAD-binding 99.2 1.5E-10 3.3E-15 134.6 16.7 64 413-487 221-285 (581)
42 PRK12842 putative succinate de 99.2 1.3E-10 2.7E-15 135.3 16.0 63 414-487 219-282 (574)
43 COG1635 THI4 Ribulose 1,5-bisp 99.2 8.7E-11 1.9E-15 113.9 12.0 60 413-478 113-176 (262)
44 PRK08275 putative oxidoreducta 99.2 1E-10 2.3E-15 135.4 15.0 60 413-480 141-200 (554)
45 PRK00711 D-amino acid dehydrog 99.2 8.3E-11 1.8E-15 131.8 13.5 66 411-492 203-268 (416)
46 PRK08641 sdhA succinate dehydr 99.2 1.2E-10 2.7E-15 135.3 15.1 50 424-481 152-201 (589)
47 TIGR01812 sdhA_frdA_Gneg succi 99.2 1.4E-10 3.1E-15 134.9 15.5 59 413-480 133-191 (566)
48 PRK06854 adenylylsulfate reduc 99.2 3.1E-10 6.7E-15 132.4 18.3 58 414-480 137-195 (608)
49 PRK08205 sdhA succinate dehydr 99.2 1.5E-10 3.2E-15 134.8 15.4 63 413-480 144-206 (583)
50 PRK12409 D-amino acid dehydrog 99.2 2E-10 4.3E-15 128.5 15.8 34 237-270 2-35 (410)
51 PF03486 HI0933_like: HI0933-l 99.2 4.6E-11 1E-15 131.8 10.3 168 237-483 1-169 (409)
52 PRK08071 L-aspartate oxidase; 99.2 9.4E-11 2E-15 134.2 13.1 54 418-481 138-191 (510)
53 PF01946 Thi4: Thi4 family; PD 99.2 1.5E-10 3.2E-15 113.4 12.2 144 235-478 16-163 (230)
54 TIGR01373 soxB sarcosine oxida 99.2 1.9E-10 4.1E-15 128.5 15.0 66 413-493 187-252 (407)
55 PRK09231 fumarate reductase fl 99.2 1.9E-10 4.1E-15 133.6 15.1 58 414-480 138-196 (582)
56 PRK12843 putative FAD-binding 99.2 3.3E-10 7.1E-15 131.7 16.8 64 413-487 225-289 (578)
57 PRK13800 putative oxidoreducta 99.2 2.1E-10 4.6E-15 139.6 15.8 39 231-269 8-46 (897)
58 PRK07512 L-aspartate oxidase; 99.2 1.2E-10 2.6E-15 133.4 12.8 58 412-480 139-197 (513)
59 PLN02464 glycerol-3-phosphate 99.2 1.3E-10 2.9E-15 135.7 13.4 70 411-489 234-304 (627)
60 TIGR01176 fum_red_Fp fumarate 99.2 2.3E-10 5.1E-15 132.6 15.1 59 414-481 137-196 (580)
61 PRK09077 L-aspartate oxidase; 99.2 2.4E-10 5.2E-15 131.7 14.7 63 415-480 144-207 (536)
62 TIGR01377 soxA_mon sarcosine o 99.2 2.9E-10 6.3E-15 125.7 13.9 34 237-270 1-34 (380)
63 PRK06069 sdhA succinate dehydr 99.1 2.8E-10 6.1E-15 132.4 14.1 59 413-480 141-200 (577)
64 PRK04176 ribulose-1,5-biphosph 99.1 3.1E-10 6.8E-15 118.0 12.6 63 411-479 106-172 (257)
65 TIGR00551 nadB L-aspartate oxi 99.1 3.8E-10 8.2E-15 128.8 14.2 58 413-481 132-190 (488)
66 TIGR03329 Phn_aa_oxid putative 99.1 2.7E-10 5.8E-15 129.2 12.4 35 235-269 23-59 (460)
67 COG0578 GlpA Glycerol-3-phosph 99.1 7.2E-10 1.6E-14 123.6 15.4 69 413-492 168-236 (532)
68 COG3573 Predicted oxidoreducta 99.1 1.2E-09 2.5E-14 111.7 15.3 68 414-488 157-236 (552)
69 PRK11259 solA N-methyltryptoph 99.1 6.7E-10 1.5E-14 122.6 14.8 36 235-270 2-37 (376)
70 PRK11728 hydroxyglutarate oxid 99.1 5.7E-10 1.2E-14 124.1 14.1 64 411-491 151-214 (393)
71 TIGR02061 aprA adenosine phosp 99.1 6.9E-10 1.5E-14 128.6 15.0 55 420-480 137-191 (614)
72 TIGR01811 sdhA_Bsu succinate d 99.1 5.6E-10 1.2E-14 130.0 14.3 51 423-481 147-197 (603)
73 TIGR00292 thiazole biosynthesi 99.1 7E-10 1.5E-14 115.0 12.0 63 411-478 102-168 (254)
74 PRK12266 glpD glycerol-3-phosp 99.1 9.7E-10 2.1E-14 125.9 13.8 68 413-491 159-227 (508)
75 PTZ00383 malate:quinone oxidor 99.1 9.3E-10 2E-14 124.5 13.3 65 411-491 213-283 (497)
76 PRK13369 glycerol-3-phosphate 99.1 1.2E-09 2.6E-14 125.2 13.7 67 413-491 159-226 (502)
77 TIGR01320 mal_quin_oxido malat 99.1 3E-09 6.6E-14 120.7 16.6 71 411-491 180-250 (483)
78 TIGR02485 CobZ_N-term precorri 99.0 1.2E-09 2.7E-14 122.9 11.9 65 411-487 125-190 (432)
79 PRK08401 L-aspartate oxidase; 99.0 7.1E-09 1.5E-13 117.7 17.5 33 237-269 2-34 (466)
80 PRK05257 malate:quinone oxidor 99.0 1.4E-08 3.1E-13 115.3 17.3 82 411-502 185-274 (494)
81 TIGR03364 HpnW_proposed FAD de 98.9 3.7E-09 8E-14 116.4 11.3 33 237-269 1-33 (365)
82 PRK13339 malate:quinone oxidor 98.9 2.1E-08 4.6E-13 113.2 17.1 81 412-502 187-275 (497)
83 PLN02661 Putative thiazole syn 98.9 8.6E-09 1.9E-13 110.0 13.1 36 234-269 90-126 (357)
84 COG1053 SdhA Succinate dehydro 98.9 6.6E-09 1.4E-13 118.8 12.5 190 234-480 4-202 (562)
85 PRK10157 putative oxidoreducta 98.9 1.1E-08 2.4E-13 114.9 12.9 35 236-270 5-39 (428)
86 COG0665 DadA Glycine/D-amino a 98.9 9.8E-09 2.1E-13 113.8 12.3 36 235-270 3-38 (387)
87 KOG2820 FAD-dependent oxidored 98.9 6.1E-09 1.3E-13 107.2 9.5 39 233-271 4-42 (399)
88 PF13618 Gluconate_2-dh3: Gluc 98.9 2.1E-08 4.5E-13 93.4 11.8 110 24-165 1-117 (131)
89 COG0644 FixC Dehydrogenases (f 98.9 8.8E-09 1.9E-13 114.6 10.8 36 235-270 2-37 (396)
90 COG1233 Phytoene dehydrogenase 98.8 1.2E-08 2.7E-13 116.1 11.6 69 404-487 219-287 (487)
91 KOG2844 Dimethylglycine dehydr 98.8 2.4E-08 5.3E-13 110.7 13.2 82 397-494 175-256 (856)
92 PRK10015 oxidoreductase; Provi 98.8 4.3E-08 9.2E-13 110.1 12.7 36 235-270 4-39 (429)
93 PTZ00363 rab-GDP dissociation 98.8 4.1E-08 8.9E-13 109.7 12.0 42 234-275 2-43 (443)
94 PF12831 FAD_oxidored: FAD dep 98.8 1E-08 2.2E-13 115.1 6.8 58 420-491 101-158 (428)
95 KOG0042 Glycerol-3-phosphate d 98.8 5.8E-09 1.3E-13 113.1 4.5 61 418-487 233-293 (680)
96 COG0029 NadB Aspartate oxidase 98.8 2E-08 4.4E-13 109.0 8.6 58 413-479 137-195 (518)
97 TIGR02730 carot_isom carotene 98.7 2.3E-08 5E-13 114.6 9.6 68 404-485 224-291 (493)
98 PRK01747 mnmC bifunctional tRN 98.7 8.8E-09 1.9E-13 122.1 6.0 34 236-269 260-293 (662)
99 PRK05192 tRNA uridine 5-carbox 98.7 5.6E-08 1.2E-12 110.9 12.1 35 235-269 3-37 (618)
100 PRK13977 myosin-cross-reactive 98.7 4.8E-07 1E-11 102.4 16.7 63 413-480 230-293 (576)
101 TIGR02734 crtI_fam phytoene de 98.6 8.3E-08 1.8E-12 110.3 10.0 69 404-486 214-282 (502)
102 PF01134 GIDA: Glucose inhibit 98.6 1.3E-07 2.9E-12 102.4 10.0 28 238-265 1-28 (392)
103 PRK06185 hypothetical protein; 98.6 1.8E-07 3.8E-12 104.6 10.2 36 234-269 4-39 (407)
104 KOG4254 Phytoene desaturase [C 98.6 3.6E-07 7.7E-12 97.6 11.1 73 400-486 255-327 (561)
105 TIGR02733 desat_CrtD C-3',4' d 98.6 4.7E-07 1E-11 103.8 13.0 70 405-483 228-297 (492)
106 KOG2404 Fumarate reductase, fl 98.5 1.6E-07 3.4E-12 96.0 7.5 55 424-488 160-216 (477)
107 PRK05329 anaerobic glycerol-3- 98.5 7.3E-07 1.6E-11 99.0 13.3 34 236-269 2-35 (422)
108 PF06039 Mqo: Malate:quinone o 98.5 2E-06 4.4E-11 93.5 16.0 83 412-507 184-267 (488)
109 PRK07208 hypothetical protein; 98.5 1.6E-06 3.5E-11 99.0 15.6 40 234-273 2-41 (479)
110 TIGR03378 glycerol3P_GlpB glyc 98.5 3E-06 6.4E-11 93.2 16.7 64 413-488 267-330 (419)
111 PRK08773 2-octaprenyl-3-methyl 98.5 2.8E-07 6.1E-12 102.5 8.2 36 234-269 4-39 (392)
112 KOG2415 Electron transfer flav 98.5 3E-07 6.4E-12 97.0 7.7 74 412-491 185-269 (621)
113 PRK07364 2-octaprenyl-6-methox 98.4 1.9E-06 4.2E-11 96.5 13.9 38 233-270 15-52 (415)
114 KOG1298 Squalene monooxygenase 98.4 3.5E-07 7.7E-12 95.7 6.6 37 233-269 42-78 (509)
115 COG3380 Predicted NAD/FAD-depe 98.4 1.3E-06 2.8E-11 87.9 10.1 32 238-269 3-34 (331)
116 TIGR00275 flavoprotein, HI0933 98.4 2.8E-06 6E-11 94.7 13.8 31 240-270 1-31 (400)
117 TIGR01350 lipoamide_DH dihydro 98.4 7.7E-06 1.7E-10 93.0 17.7 33 236-268 1-33 (461)
118 PLN02697 lycopene epsilon cycl 98.4 1.5E-06 3.2E-11 99.2 11.5 35 234-268 106-140 (529)
119 PF01494 FAD_binding_3: FAD bi 98.4 6.1E-07 1.3E-11 97.6 7.8 37 236-272 1-37 (356)
120 PF13738 Pyr_redox_3: Pyridine 98.4 1.8E-06 3.9E-11 86.5 10.1 60 415-489 87-147 (203)
121 TIGR03377 glycerol3P_GlpA glyc 98.3 2E-06 4.4E-11 99.1 11.3 72 411-492 130-201 (516)
122 PLN02985 squalene monooxygenas 98.3 4.8E-06 1E-10 95.5 14.2 37 233-269 40-76 (514)
123 PRK07608 ubiquinone biosynthes 98.3 1.6E-06 3.6E-11 96.1 9.5 36 235-270 4-39 (388)
124 COG2509 Uncharacterized FAD-de 98.3 5.9E-06 1.3E-10 89.2 12.7 212 232-482 14-232 (486)
125 PLN02172 flavin-containing mon 98.3 6.3E-06 1.4E-10 93.1 13.3 37 234-270 8-44 (461)
126 PRK08244 hypothetical protein; 98.3 2.2E-06 4.7E-11 98.4 9.6 35 236-270 2-36 (493)
127 KOG2853 Possible oxidoreductas 98.3 7.5E-06 1.6E-10 84.6 12.1 76 411-491 245-330 (509)
128 PRK07233 hypothetical protein; 98.3 4.2E-06 9.2E-11 94.2 11.7 37 238-274 1-37 (434)
129 PRK05675 sdhA succinate dehydr 98.3 6.8E-06 1.5E-10 95.6 13.5 62 412-481 129-190 (570)
130 PRK06126 hypothetical protein; 98.3 5.9E-06 1.3E-10 96.1 13.0 36 234-269 5-40 (545)
131 PRK06847 hypothetical protein; 98.3 1.5E-05 3.2E-10 88.1 15.6 36 235-270 3-38 (375)
132 PRK06834 hypothetical protein; 98.3 6.6E-06 1.4E-10 93.9 12.8 35 235-269 2-36 (488)
133 PRK08243 4-hydroxybenzoate 3-m 98.2 6.9E-06 1.5E-10 91.4 12.4 34 236-269 2-35 (392)
134 TIGR01988 Ubi-OHases Ubiquinon 98.2 1.8E-06 3.8E-11 95.6 7.6 33 238-270 1-33 (385)
135 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1E-05 2.2E-10 93.9 14.0 37 234-270 8-44 (538)
136 PRK05714 2-octaprenyl-3-methyl 98.2 3.1E-06 6.7E-11 94.6 9.4 34 236-269 2-35 (405)
137 TIGR02731 phytoene_desat phyto 98.2 2E-05 4.4E-10 89.4 16.2 36 238-273 1-36 (453)
138 TIGR00136 gidA glucose-inhibit 98.2 5.4E-06 1.2E-10 94.7 11.1 33 237-269 1-33 (617)
139 PRK11445 putative oxidoreducta 98.2 1.7E-05 3.6E-10 86.9 14.5 33 237-270 2-34 (351)
140 KOG2665 Predicted FAD-dependen 98.2 5.7E-06 1.2E-10 84.7 8.9 216 233-504 45-285 (453)
141 PRK07190 hypothetical protein; 98.2 1.1E-05 2.4E-10 92.1 12.2 36 235-270 4-39 (487)
142 PRK08163 salicylate hydroxylas 98.2 9E-06 2E-10 90.5 11.1 36 235-270 3-38 (396)
143 PRK08013 oxidoreductase; Provi 98.2 5.3E-06 1.1E-10 92.5 9.1 35 236-270 3-37 (400)
144 PRK06184 hypothetical protein; 98.2 4.9E-06 1.1E-10 95.7 9.1 35 236-270 3-37 (502)
145 PRK07333 2-octaprenyl-6-methox 98.1 5.7E-06 1.2E-10 92.3 8.4 33 237-269 2-36 (403)
146 TIGR01816 sdhA_forward succina 98.1 1.7E-05 3.6E-10 92.3 12.1 61 412-481 122-182 (565)
147 PRK07588 hypothetical protein; 98.1 2.5E-05 5.4E-10 86.8 12.6 32 238-269 2-33 (391)
148 PLN02612 phytoene desaturase 98.1 3.3E-05 7.2E-10 89.8 13.8 38 236-273 93-130 (567)
149 PF13450 NAD_binding_8: NAD(P) 98.1 3.7E-06 8.1E-11 68.4 4.2 30 241-270 1-30 (68)
150 COG0445 GidA Flavin-dependent 98.1 5E-06 1.1E-10 91.5 6.1 34 235-268 3-36 (621)
151 TIGR01316 gltA glutamate synth 98.1 7.8E-05 1.7E-09 84.4 15.9 37 235-271 132-168 (449)
152 COG2072 TrkA Predicted flavopr 98.0 4.4E-05 9.5E-10 86.0 13.1 38 233-270 5-43 (443)
153 COG3075 GlpB Anaerobic glycero 98.0 4.1E-05 8.8E-10 79.2 11.1 53 418-482 267-319 (421)
154 PRK12831 putative oxidoreducta 98.0 7.9E-05 1.7E-09 84.6 14.8 37 234-270 138-174 (464)
155 TIGR01372 soxA sarcosine oxida 98.0 9.9E-05 2.1E-09 91.3 16.7 66 415-491 357-422 (985)
156 KOG2852 Possible oxidoreductas 98.0 7.6E-06 1.6E-10 82.9 5.0 65 414-490 152-217 (380)
157 PLN00093 geranylgeranyl diphos 98.0 8.2E-06 1.8E-10 92.1 5.5 38 232-269 35-72 (450)
158 TIGR02732 zeta_caro_desat caro 97.9 6.3E-05 1.4E-09 85.7 12.6 35 238-272 1-35 (474)
159 PRK15317 alkyl hydroperoxide r 97.9 0.00016 3.5E-09 83.4 15.8 58 422-488 400-457 (517)
160 COG1231 Monoamine oxidase [Ami 97.9 0.00011 2.4E-09 79.9 13.1 41 234-274 5-45 (450)
161 TIGR02352 thiamin_ThiO glycine 97.9 8E-05 1.7E-09 80.7 12.3 59 411-485 139-197 (337)
162 TIGR01421 gluta_reduc_1 glutat 97.9 8.3E-06 1.8E-10 92.3 4.5 34 236-269 2-35 (450)
163 PRK06116 glutathione reductase 97.9 9.4E-06 2E-10 92.0 4.8 34 235-268 3-36 (450)
164 TIGR03140 AhpF alkyl hydropero 97.9 0.00022 4.8E-09 82.2 16.1 58 422-488 401-458 (515)
165 PRK12810 gltD glutamate syntha 97.9 0.00037 8.1E-09 79.4 17.7 38 234-271 141-178 (471)
166 PLN02487 zeta-carotene desatur 97.9 0.00016 3.4E-09 83.5 14.6 37 236-272 75-111 (569)
167 PRK06370 mercuric reductase; V 97.9 1.1E-05 2.3E-10 91.9 4.9 37 233-269 2-38 (463)
168 PTZ00058 glutathione reductase 97.9 1.2E-05 2.6E-10 92.8 4.8 35 235-269 47-81 (561)
169 TIGR02023 BchP-ChlP geranylger 97.8 1.2E-05 2.6E-10 89.2 4.4 32 237-268 1-32 (388)
170 PRK05976 dihydrolipoamide dehy 97.8 1.4E-05 2.9E-10 91.3 4.7 36 234-269 2-37 (472)
171 TIGR02032 GG-red-SF geranylger 97.8 1.5E-05 3.3E-10 84.4 4.8 34 237-270 1-34 (295)
172 PF04820 Trp_halogenase: Trypt 97.8 2.1E-05 4.5E-10 88.9 5.7 52 413-478 158-209 (454)
173 TIGR01424 gluta_reduc_2 glutat 97.8 1.5E-05 3.2E-10 90.3 4.6 33 236-268 2-34 (446)
174 COG0562 Glf UDP-galactopyranos 97.8 2E-05 4.3E-10 81.4 5.0 40 237-276 2-41 (374)
175 PRK09126 hypothetical protein; 97.8 2E-05 4.3E-10 87.6 4.6 35 236-270 3-37 (392)
176 COG1249 Lpd Pyruvate/2-oxoglut 97.8 2.1E-05 4.5E-10 88.0 4.5 36 234-269 2-37 (454)
177 PRK07818 dihydrolipoamide dehy 97.7 2.4E-05 5.3E-10 89.1 4.8 35 235-269 3-37 (466)
178 PLN02546 glutathione reductase 97.7 2.3E-05 5.1E-10 90.5 4.5 34 234-267 77-110 (558)
179 PRK06115 dihydrolipoamide dehy 97.7 2.4E-05 5.3E-10 89.0 4.5 33 236-268 3-35 (466)
180 PRK12775 putative trifunctiona 97.7 0.00044 9.4E-09 85.4 15.4 37 235-271 429-465 (1006)
181 PLN02463 lycopene beta cyclase 97.7 3.6E-05 7.9E-10 86.5 5.6 36 234-269 26-61 (447)
182 PRK11749 dihydropyrimidine deh 97.7 0.00094 2E-08 75.9 16.8 37 235-271 139-175 (457)
183 PRK06416 dihydrolipoamide dehy 97.7 3.2E-05 6.9E-10 88.0 4.8 35 235-269 3-37 (462)
184 PRK08020 ubiF 2-octaprenyl-3-m 97.7 3.1E-05 6.6E-10 86.1 4.5 35 235-269 4-38 (391)
185 COG1232 HemY Protoporphyrinoge 97.7 0.00027 5.9E-09 78.5 11.8 35 239-273 3-39 (444)
186 PRK07845 flavoprotein disulfid 97.7 0.00029 6.4E-09 80.2 12.4 32 238-269 3-34 (466)
187 TIGR02053 MerA mercuric reduct 97.7 3E-05 6.6E-10 88.2 4.3 33 237-269 1-33 (463)
188 PRK08010 pyridine nucleotide-d 97.7 3.5E-05 7.6E-10 87.1 4.7 35 236-270 3-37 (441)
189 PRK07494 2-octaprenyl-6-methox 97.7 3.2E-05 7E-10 85.8 4.4 35 235-269 6-40 (388)
190 TIGR02028 ChlP geranylgeranyl 97.7 3.5E-05 7.6E-10 85.8 4.3 33 237-269 1-33 (398)
191 TIGR00031 UDP-GALP_mutase UDP- 97.7 4.4E-05 9.4E-10 83.6 4.9 37 237-273 2-38 (377)
192 PRK14694 putative mercuric red 97.6 4.4E-05 9.6E-10 86.9 4.7 35 235-269 5-39 (468)
193 PRK08849 2-octaprenyl-3-methyl 97.6 4.8E-05 1E-09 84.4 4.8 34 236-269 3-36 (384)
194 KOG2311 NAD/FAD-utilizing prot 97.6 0.00011 2.4E-09 79.4 6.9 35 234-268 26-60 (679)
195 PF00743 FMO-like: Flavin-bind 97.6 0.00045 9.7E-09 79.4 12.5 33 238-270 3-35 (531)
196 PRK13748 putative mercuric red 97.6 4.4E-05 9.6E-10 89.1 4.4 34 235-268 97-130 (561)
197 TIGR01423 trypano_reduc trypan 97.6 4.8E-05 1E-09 86.7 4.5 34 235-268 2-36 (486)
198 PRK07251 pyridine nucleotide-d 97.6 5E-05 1.1E-09 85.8 4.6 35 236-270 3-37 (438)
199 PRK06467 dihydrolipoamide dehy 97.6 6.1E-05 1.3E-09 85.8 5.3 38 234-271 2-39 (471)
200 PRK07045 putative monooxygenas 97.6 5.6E-05 1.2E-09 83.9 4.8 36 235-270 4-39 (388)
201 PRK09897 hypothetical protein; 97.6 0.00085 1.8E-08 76.9 14.4 34 237-270 2-37 (534)
202 PTZ00153 lipoamide dehydrogena 97.6 5.5E-05 1.2E-09 88.7 4.9 34 235-268 115-148 (659)
203 PRK08850 2-octaprenyl-6-methox 97.6 5.1E-05 1.1E-09 84.8 4.4 34 235-268 3-36 (405)
204 PRK05249 soluble pyridine nucl 97.6 6E-05 1.3E-09 85.7 5.0 37 235-271 4-40 (461)
205 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 5.9E-05 1.3E-09 83.8 4.7 34 236-269 2-35 (390)
206 PLN02507 glutathione reductase 97.6 5.9E-05 1.3E-09 86.4 4.8 34 234-267 23-56 (499)
207 COG0492 TrxB Thioredoxin reduc 97.6 7.4E-05 1.6E-09 79.5 4.8 35 235-269 2-37 (305)
208 KOG0029 Amine oxidase [Seconda 97.5 7.4E-05 1.6E-09 84.7 4.9 41 234-274 13-53 (501)
209 TIGR01790 carotene-cycl lycope 97.5 7.4E-05 1.6E-09 82.9 4.4 32 238-269 1-32 (388)
210 PRK05732 2-octaprenyl-6-methox 97.5 7E-05 1.5E-09 83.2 4.2 34 235-268 2-38 (395)
211 TIGR03143 AhpF_homolog putativ 97.5 8.6E-05 1.9E-09 86.3 4.8 35 235-269 3-37 (555)
212 TIGR01984 UbiH 2-polyprenyl-6- 97.5 8E-05 1.7E-09 82.4 4.3 33 238-270 1-34 (382)
213 TIGR01292 TRX_reduct thioredox 97.5 9.3E-05 2E-09 78.7 4.5 33 237-269 1-33 (300)
214 PLN02576 protoporphyrinogen ox 97.5 0.00012 2.5E-09 84.3 5.4 40 234-273 10-50 (496)
215 PRK12809 putative oxidoreducta 97.5 0.0013 2.7E-08 77.9 14.1 37 235-271 309-345 (639)
216 PRK06292 dihydrolipoamide dehy 97.5 9.5E-05 2.1E-09 84.1 4.5 34 235-268 2-35 (460)
217 PRK06617 2-octaprenyl-6-methox 97.5 9.5E-05 2.1E-09 81.7 4.3 33 237-269 2-34 (374)
218 COG0654 UbiH 2-polyprenyl-6-me 97.5 9.5E-05 2.1E-09 82.1 4.3 33 236-268 2-34 (387)
219 PTZ00367 squalene epoxidase; P 97.4 0.0001 2.3E-09 85.2 4.6 35 235-269 32-66 (567)
220 PLN02268 probable polyamine ox 97.4 0.00012 2.5E-09 82.8 4.8 37 238-274 2-38 (435)
221 PRK06327 dihydrolipoamide dehy 97.4 0.00011 2.4E-09 83.8 4.7 33 235-267 3-35 (475)
222 TIGR01989 COQ6 Ubiquinone bios 97.4 9E-05 1.9E-09 83.7 3.8 33 237-269 1-37 (437)
223 PTZ00052 thioredoxin reductase 97.4 0.00011 2.5E-09 84.1 4.5 34 235-268 4-37 (499)
224 PRK07236 hypothetical protein; 97.4 0.00013 2.8E-09 81.0 4.8 35 235-269 5-39 (386)
225 PRK11883 protoporphyrinogen ox 97.4 0.00014 2.9E-09 82.5 4.9 36 238-273 2-39 (451)
226 PF05834 Lycopene_cycl: Lycope 97.4 0.00011 2.3E-09 81.2 3.9 33 238-270 1-35 (374)
227 PRK09564 coenzyme A disulfide 97.4 0.0032 6.9E-08 71.3 15.8 59 417-491 199-257 (444)
228 TIGR01789 lycopene_cycl lycope 97.4 0.00015 3.2E-09 79.9 4.8 32 238-269 1-34 (370)
229 PRK09754 phenylpropionate diox 97.3 0.0093 2E-07 66.4 18.2 36 236-271 3-40 (396)
230 PRK06753 hypothetical protein; 97.3 0.00019 4E-09 79.2 4.6 33 238-270 2-34 (373)
231 PRK07538 hypothetical protein; 97.3 0.00031 6.7E-09 78.7 6.3 33 238-270 2-34 (413)
232 TIGR00562 proto_IX_ox protopor 97.3 0.00021 4.6E-09 81.2 4.8 36 237-272 3-42 (462)
233 PRK08132 FAD-dependent oxidore 97.3 0.00023 4.9E-09 82.9 4.8 35 235-269 22-56 (547)
234 TIGR03197 MnmC_Cterm tRNA U-34 97.3 0.00029 6.4E-09 78.0 5.4 59 411-486 137-195 (381)
235 COG3349 Uncharacterized conser 97.3 0.00026 5.7E-09 78.5 4.6 37 238-274 2-38 (485)
236 PRK06996 hypothetical protein; 97.2 0.00025 5.5E-09 79.0 4.4 37 233-269 8-48 (398)
237 PF07992 Pyr_redox_2: Pyridine 97.2 0.00039 8.4E-09 69.3 4.9 32 238-269 1-32 (201)
238 PRK05868 hypothetical protein; 97.2 0.00049 1.1E-08 75.9 6.1 33 238-270 3-35 (372)
239 PRK07846 mycothione reductase; 97.2 0.00027 5.9E-09 80.0 4.1 32 236-269 1-32 (451)
240 PRK10262 thioredoxin reductase 97.2 0.00033 7.1E-09 75.7 4.3 35 234-268 4-38 (321)
241 PLN02568 polyamine oxidase 97.2 0.0004 8.7E-09 80.1 5.1 39 235-273 4-47 (539)
242 TIGR03452 mycothione_red mycot 97.2 0.0003 6.4E-09 79.8 3.9 32 236-269 2-33 (452)
243 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00037 7.9E-09 76.8 4.4 34 237-270 3-36 (436)
244 PRK06912 acoL dihydrolipoamide 97.1 0.00041 8.9E-09 78.8 4.7 32 238-269 2-33 (458)
245 PRK08294 phenol 2-monooxygenas 97.1 0.00039 8.5E-09 81.9 4.4 37 233-269 29-66 (634)
246 PLN02927 antheraxanthin epoxid 97.1 0.00048 1E-08 80.5 5.0 37 233-269 78-114 (668)
247 PRK14727 putative mercuric red 97.1 0.0005 1.1E-08 78.6 5.1 36 234-269 14-49 (479)
248 PLN02676 polyamine oxidase 97.1 0.00056 1.2E-08 78.1 5.2 39 235-273 25-64 (487)
249 TIGR01438 TGR thioredoxin and 97.1 0.00044 9.5E-09 79.0 4.3 33 236-268 2-34 (484)
250 PRK06475 salicylate hydroxylas 97.1 0.0008 1.7E-08 75.1 6.1 34 237-270 3-36 (400)
251 PRK12416 protoporphyrinogen ox 97.0 0.00055 1.2E-08 77.9 4.7 36 238-273 3-44 (463)
252 PF06100 Strep_67kDa_ant: Stre 97.0 0.025 5.4E-07 63.0 16.4 55 420-479 218-273 (500)
253 KOG2614 Kynurenine 3-monooxyge 96.9 0.00076 1.6E-08 72.6 4.1 34 236-269 2-35 (420)
254 TIGR03315 Se_ygfK putative sel 96.9 0.00085 1.9E-08 81.6 5.0 37 235-271 536-572 (1012)
255 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.00084 1.8E-08 74.4 4.3 34 237-270 1-34 (433)
256 PF00996 GDI: GDP dissociation 96.8 0.0012 2.5E-08 73.5 4.9 43 233-275 1-43 (438)
257 COG1148 HdrA Heterodisulfide r 96.8 0.0012 2.7E-08 71.8 4.7 38 235-272 123-160 (622)
258 PF13454 NAD_binding_9: FAD-NA 96.8 0.011 2.3E-07 56.7 10.7 30 240-269 1-35 (156)
259 TIGR03219 salicylate_mono sali 96.8 0.0018 4E-08 72.5 6.2 33 238-270 2-35 (414)
260 PF13434 K_oxygenase: L-lysine 96.7 0.0074 1.6E-07 65.6 9.8 35 236-270 2-37 (341)
261 PLN02529 lysine-specific histo 96.7 0.0017 3.7E-08 76.8 5.2 39 235-273 159-197 (738)
262 PF00070 Pyr_redox: Pyridine n 96.7 0.0025 5.4E-08 53.6 4.8 33 239-271 2-34 (80)
263 PLN02328 lysine-specific histo 96.7 0.0018 3.8E-08 77.2 5.2 39 235-273 237-275 (808)
264 KOG0405 Pyridine nucleotide-di 96.7 0.0026 5.5E-08 66.6 5.7 35 234-268 18-52 (478)
265 KOG1399 Flavin-containing mono 96.6 0.0017 3.8E-08 72.5 4.3 37 235-271 5-41 (448)
266 PRK12779 putative bifunctional 96.6 0.0019 4.2E-08 79.1 4.9 38 235-272 305-342 (944)
267 PRK12769 putative oxidoreducta 96.5 0.0028 6.1E-08 75.3 5.3 37 235-271 326-362 (654)
268 KOG4716 Thioredoxin reductase 96.5 0.0024 5.2E-08 66.5 3.9 35 234-268 17-51 (503)
269 PRK09853 putative selenate red 96.4 0.0027 5.9E-08 77.1 4.8 37 235-271 538-574 (1019)
270 PRK12778 putative bifunctional 96.4 0.0033 7.1E-08 76.0 5.2 36 235-270 430-465 (752)
271 KOG1335 Dihydrolipoamide dehyd 96.4 0.0038 8.2E-08 66.2 4.9 37 235-271 38-74 (506)
272 KOG2960 Protein involved in th 96.3 0.0016 3.6E-08 63.3 1.6 34 236-269 76-111 (328)
273 PLN02852 ferredoxin-NADP+ redu 96.2 0.006 1.3E-07 69.2 5.6 36 236-271 26-63 (491)
274 PRK14989 nitrite reductase sub 96.2 0.066 1.4E-06 65.2 14.7 61 418-491 196-256 (847)
275 PRK08255 salicylyl-CoA 5-hydro 96.2 0.0043 9.4E-08 74.9 4.4 34 238-271 2-37 (765)
276 TIGR02374 nitri_red_nirB nitri 96.1 0.079 1.7E-06 64.3 14.9 60 418-492 191-250 (785)
277 PRK12814 putative NADPH-depend 96.1 0.0069 1.5E-07 71.9 5.8 37 235-271 192-228 (652)
278 PRK06567 putative bifunctional 96.1 0.005 1.1E-07 74.0 4.4 35 235-269 382-416 (1028)
279 PLN03000 amine oxidase 96.1 0.0061 1.3E-07 72.8 4.9 39 235-273 183-221 (881)
280 PRK12770 putative glutamate sy 96.0 0.0087 1.9E-07 65.5 5.7 36 235-270 17-52 (352)
281 PRK04965 NADH:flavorubredoxin 96.0 0.091 2E-06 58.1 13.8 33 237-269 142-174 (377)
282 PLN02976 amine oxidase 96.0 0.0074 1.6E-07 74.7 5.0 40 234-273 691-730 (1713)
283 TIGR01318 gltD_gamma_fam gluta 95.9 0.0085 1.8E-07 68.2 5.2 37 235-271 140-176 (467)
284 KOG0685 Flavin-containing amin 95.9 0.0091 2E-07 65.4 4.6 39 235-273 20-59 (498)
285 TIGR01317 GOGAT_sm_gam glutama 95.7 0.0099 2.2E-07 68.0 4.7 35 236-270 143-177 (485)
286 PRK12771 putative glutamate sy 95.5 0.015 3.2E-07 68.0 5.1 36 236-271 137-172 (564)
287 KOG1276 Protoporphyrinogen oxi 95.3 0.021 4.6E-07 61.8 5.0 42 233-274 8-51 (491)
288 PRK13984 putative oxidoreducta 95.2 0.024 5.1E-07 66.9 5.7 38 234-271 281-318 (604)
289 PTZ00188 adrenodoxin reductase 95.1 0.024 5.3E-07 63.7 4.8 37 236-272 39-76 (506)
290 KOG3855 Monooxygenase involved 95.0 0.027 5.8E-07 60.7 4.5 37 234-270 34-74 (481)
291 COG2907 Predicted NAD/FAD-bind 94.9 0.021 4.7E-07 60.0 3.4 38 236-274 8-45 (447)
292 COG3634 AhpF Alkyl hydroperoxi 94.5 0.024 5.1E-07 59.6 2.6 68 423-500 404-471 (520)
293 PRK13512 coenzyme A disulfide 94.5 0.04 8.7E-07 62.2 4.7 34 238-271 3-38 (438)
294 KOG2403 Succinate dehydrogenas 94.3 0.091 2E-06 58.6 6.7 36 233-268 52-87 (642)
295 COG0493 GltD NADPH-dependent g 94.2 0.044 9.5E-07 61.7 4.2 35 237-271 124-158 (457)
296 PTZ00318 NADH dehydrogenase-li 94.2 0.052 1.1E-06 61.1 4.8 37 235-271 9-45 (424)
297 KOG1439 RAB proteins geranylge 94.2 0.027 5.9E-07 60.4 2.2 42 234-275 2-43 (440)
298 COG5044 MRS6 RAB proteins gera 94.0 0.066 1.4E-06 56.9 4.7 40 236-275 6-45 (434)
299 TIGR03862 flavo_PP4765 unchara 94.0 0.15 3.3E-06 56.0 7.6 92 367-484 54-145 (376)
300 COG1206 Gid NAD(FAD)-utilizing 93.9 0.047 1E-06 57.1 3.3 33 237-269 4-36 (439)
301 KOG4405 GDP dissociation inhib 93.9 0.071 1.5E-06 57.2 4.6 42 233-274 5-46 (547)
302 PF02558 ApbA: Ketopantoate re 93.5 0.083 1.8E-06 50.0 4.1 31 239-269 1-31 (151)
303 TIGR03169 Nterm_to_SelD pyridi 93.2 0.085 1.8E-06 57.9 4.1 34 238-271 1-37 (364)
304 COG0446 HcaD Uncharacterized N 92.7 0.12 2.6E-06 57.4 4.6 35 236-270 136-170 (415)
305 PF01210 NAD_Gly3P_dh_N: NAD-d 92.4 0.15 3.2E-06 48.9 4.1 31 239-269 2-32 (157)
306 PRK04965 NADH:flavorubredoxin 92.2 0.16 3.5E-06 56.1 4.7 61 417-492 191-251 (377)
307 KOG0399 Glutamate synthase [Am 92.1 0.15 3.3E-06 61.0 4.3 38 235-272 1784-1821(2142)
308 KOG1800 Ferredoxin/adrenodoxin 91.9 0.2 4.3E-06 53.6 4.6 35 237-271 21-57 (468)
309 COG0569 TrkA K+ transport syst 91.7 0.2 4.2E-06 51.2 4.3 32 238-269 2-33 (225)
310 PF02737 3HCDH_N: 3-hydroxyacy 91.5 0.22 4.8E-06 48.9 4.3 31 239-269 2-32 (180)
311 PF13434 K_oxygenase: L-lysine 91.4 1.8 3.9E-05 47.1 11.6 38 233-270 187-226 (341)
312 COG1252 Ndh NADH dehydrogenase 91.3 0.22 4.9E-06 54.9 4.4 36 237-272 4-41 (405)
313 PRK05708 2-dehydropantoate 2-r 91.2 0.23 4.9E-06 53.3 4.4 32 238-269 4-35 (305)
314 PF03721 UDPG_MGDP_dh_N: UDP-g 90.9 0.26 5.6E-06 48.6 4.1 31 239-269 3-33 (185)
315 PRK09754 phenylpropionate diox 90.7 0.28 6.1E-06 54.6 4.7 34 237-270 145-178 (396)
316 KOG3851 Sulfide:quinone oxidor 90.1 0.32 7E-06 50.8 4.1 37 233-269 36-74 (446)
317 PRK06249 2-dehydropantoate 2-r 89.8 0.35 7.6E-06 52.0 4.4 32 238-269 7-38 (313)
318 PRK05976 dihydrolipoamide dehy 89.8 0.38 8.2E-06 54.9 4.9 34 237-270 181-214 (472)
319 PRK06129 3-hydroxyacyl-CoA deh 89.8 0.35 7.6E-06 51.9 4.3 32 238-269 4-35 (308)
320 PRK07251 pyridine nucleotide-d 89.6 0.43 9.4E-06 53.9 5.1 33 238-270 159-191 (438)
321 TIGR01350 lipoamide_DH dihydro 89.5 0.43 9.2E-06 54.3 4.9 34 237-270 171-204 (461)
322 KOG0404 Thioredoxin reductase 89.5 0.37 8.1E-06 47.8 3.7 35 234-268 6-40 (322)
323 PRK12921 2-dehydropantoate 2-r 88.9 0.44 9.5E-06 50.9 4.3 31 238-268 2-32 (305)
324 TIGR02053 MerA mercuric reduct 88.8 0.5 1.1E-05 53.8 4.9 34 237-270 167-200 (463)
325 PRK06467 dihydrolipoamide dehy 88.8 0.55 1.2E-05 53.6 5.2 34 237-270 175-208 (471)
326 PRK06522 2-dehydropantoate 2-r 88.7 0.46 9.9E-06 50.6 4.2 30 239-268 3-32 (304)
327 PRK06912 acoL dihydrolipoamide 88.3 0.56 1.2E-05 53.3 4.9 34 237-270 171-204 (458)
328 COG1249 Lpd Pyruvate/2-oxoglut 88.3 0.6 1.3E-05 52.6 4.9 36 237-272 174-209 (454)
329 PRK07846 mycothione reductase; 88.3 0.56 1.2E-05 53.2 4.8 34 237-270 167-200 (451)
330 PF01593 Amino_oxidase: Flavin 88.1 0.4 8.7E-06 53.1 3.5 29 246-274 1-29 (450)
331 PRK06370 mercuric reductase; V 88.1 0.61 1.3E-05 53.1 5.0 34 237-270 172-205 (463)
332 TIGR01421 gluta_reduc_1 glutat 88.0 0.6 1.3E-05 52.9 4.8 34 237-270 167-200 (450)
333 PF13738 Pyr_redox_3: Pyridine 87.9 0.51 1.1E-05 46.8 3.8 34 236-269 167-200 (203)
334 PRK06115 dihydrolipoamide dehy 87.8 0.67 1.4E-05 52.8 5.1 34 237-270 175-208 (466)
335 KOG1336 Monodehydroascorbate/f 87.7 6.2 0.00013 43.9 12.0 59 419-491 265-323 (478)
336 PRK09260 3-hydroxybutyryl-CoA 87.7 0.59 1.3E-05 49.6 4.2 31 239-269 4-34 (288)
337 PRK07818 dihydrolipoamide dehy 87.6 0.7 1.5E-05 52.7 5.1 34 237-270 173-206 (466)
338 PRK01438 murD UDP-N-acetylmura 87.6 0.58 1.3E-05 53.5 4.4 32 238-269 18-49 (480)
339 PRK06416 dihydrolipoamide dehy 87.4 0.7 1.5E-05 52.5 5.0 34 237-270 173-206 (462)
340 PRK07066 3-hydroxybutyryl-CoA 87.4 0.63 1.4E-05 50.0 4.3 32 238-269 9-40 (321)
341 TIGR03385 CoA_CoA_reduc CoA-di 87.4 0.67 1.5E-05 52.1 4.7 34 237-270 138-171 (427)
342 PRK08293 3-hydroxybutyryl-CoA 87.3 0.64 1.4E-05 49.3 4.2 32 238-269 5-36 (287)
343 PRK02705 murD UDP-N-acetylmura 87.1 0.64 1.4E-05 52.8 4.4 32 239-270 3-34 (459)
344 PRK13512 coenzyme A disulfide 87.1 0.68 1.5E-05 52.3 4.6 34 237-270 149-182 (438)
345 COG4529 Uncharacterized protei 87.0 0.76 1.6E-05 51.1 4.6 34 237-270 2-38 (474)
346 PRK07819 3-hydroxybutyryl-CoA 86.8 0.64 1.4E-05 49.3 3.9 32 238-269 7-38 (286)
347 PRK08229 2-dehydropantoate 2-r 86.7 0.7 1.5E-05 50.3 4.2 32 238-269 4-35 (341)
348 TIGR02354 thiF_fam2 thiamine b 86.5 0.87 1.9E-05 45.5 4.4 33 236-268 21-54 (200)
349 PRK06292 dihydrolipoamide dehy 86.4 0.87 1.9E-05 51.8 5.0 34 237-270 170-203 (460)
350 PRK05249 soluble pyridine nucl 86.4 0.87 1.9E-05 51.8 5.0 34 237-270 176-209 (461)
351 PRK06718 precorrin-2 dehydroge 86.1 0.93 2E-05 45.4 4.4 32 237-268 11-42 (202)
352 PF02254 TrkA_N: TrkA-N domain 85.9 1 2.2E-05 40.3 4.2 31 239-269 1-31 (116)
353 TIGR03452 mycothione_red mycot 85.8 0.88 1.9E-05 51.6 4.6 34 237-270 170-203 (452)
354 PRK06327 dihydrolipoamide dehy 85.7 0.96 2.1E-05 51.7 4.9 33 238-270 185-217 (475)
355 PRK07530 3-hydroxybutyryl-CoA 85.6 0.89 1.9E-05 48.3 4.2 32 238-269 6-37 (292)
356 PRK04148 hypothetical protein; 85.5 0.74 1.6E-05 42.6 3.1 32 237-269 18-49 (134)
357 PRK14106 murD UDP-N-acetylmura 85.3 0.92 2E-05 51.4 4.4 33 237-269 6-38 (450)
358 PRK06719 precorrin-2 dehydroge 85.2 1.1 2.3E-05 43.0 4.2 30 237-266 14-43 (157)
359 TIGR01424 gluta_reduc_2 glutat 85.0 1.1 2.4E-05 50.8 4.9 33 238-270 168-200 (446)
360 PF01488 Shikimate_DH: Shikima 85.0 1.2 2.7E-05 41.3 4.4 33 236-268 12-45 (135)
361 PRK09564 coenzyme A disulfide 85.0 1.2 2.5E-05 50.4 5.1 34 237-270 150-183 (444)
362 PRK06035 3-hydroxyacyl-CoA deh 84.9 0.99 2.1E-05 47.9 4.2 32 238-269 5-36 (291)
363 PRK07688 thiamine/molybdopteri 84.8 1 2.3E-05 48.8 4.4 35 235-269 23-58 (339)
364 PTZ00153 lipoamide dehydrogena 84.8 1.1 2.3E-05 53.2 4.7 33 238-270 314-346 (659)
365 PF00899 ThiF: ThiF family; I 84.7 1 2.3E-05 41.7 3.8 33 237-269 3-36 (135)
366 PRK07845 flavoprotein disulfid 84.6 1.2 2.7E-05 50.6 5.1 34 237-270 178-211 (466)
367 PRK12475 thiamine/molybdopteri 84.4 1.1 2.5E-05 48.5 4.4 34 236-269 24-58 (338)
368 PRK14620 NAD(P)H-dependent gly 84.4 1.1 2.4E-05 48.4 4.3 31 238-268 2-32 (326)
369 cd01483 E1_enzyme_family Super 84.3 1.4 3E-05 41.3 4.5 31 239-269 2-33 (143)
370 KOG2755 Oxidoreductase [Genera 84.2 0.8 1.7E-05 46.8 2.9 31 239-269 2-34 (334)
371 PRK06116 glutathione reductase 84.1 1.2 2.6E-05 50.4 4.8 34 237-270 168-201 (450)
372 PRK14618 NAD(P)H-dependent gly 84.1 1.1 2.4E-05 48.4 4.3 32 238-269 6-37 (328)
373 PRK08010 pyridine nucleotide-d 84.0 1.3 2.9E-05 49.9 5.0 33 238-270 160-192 (441)
374 PRK15116 sulfur acceptor prote 83.9 1.2 2.6E-05 46.5 4.2 35 235-269 29-64 (268)
375 PRK05808 3-hydroxybutyryl-CoA 83.8 1.2 2.6E-05 47.1 4.2 32 238-269 5-36 (282)
376 TIGR03140 AhpF alkyl hydropero 83.8 1.2 2.5E-05 51.6 4.4 34 237-270 353-386 (515)
377 cd01487 E1_ThiF_like E1_ThiF_l 83.7 1.4 3.1E-05 42.9 4.4 31 239-269 2-33 (174)
378 COG1893 ApbA Ketopantoate redu 83.7 1.2 2.6E-05 47.7 4.2 31 239-269 3-33 (307)
379 COG1748 LYS9 Saccharopine dehy 83.7 1.2 2.6E-05 48.9 4.2 32 238-269 3-35 (389)
380 PTZ00058 glutathione reductase 83.6 1.3 2.9E-05 51.5 4.8 34 237-270 238-271 (561)
381 PRK10262 thioredoxin reductase 83.5 1.2 2.6E-05 47.9 4.2 33 237-269 147-179 (321)
382 TIGR02374 nitri_red_nirB nitri 83.3 1.4 3E-05 53.7 5.0 35 237-271 141-175 (785)
383 PLN02507 glutathione reductase 83.2 1.3 2.9E-05 50.8 4.6 33 237-269 204-236 (499)
384 TIGR01470 cysG_Nterm siroheme 83.1 1.5 3.2E-05 44.0 4.3 31 238-268 11-41 (205)
385 cd01075 NAD_bind_Leu_Phe_Val_D 83.0 1.5 3.3E-05 43.8 4.4 32 237-268 29-60 (200)
386 PRK14989 nitrite reductase sub 83.0 1.4 3.1E-05 53.8 4.9 35 238-272 147-181 (847)
387 PRK13748 putative mercuric red 82.8 1.5 3.3E-05 51.2 5.0 33 237-269 271-303 (561)
388 PRK15317 alkyl hydroperoxide r 82.7 1.3 2.9E-05 51.1 4.4 35 237-271 352-386 (517)
389 PRK14694 putative mercuric red 82.7 1.7 3.7E-05 49.5 5.3 33 237-269 179-211 (468)
390 COG1004 Ugd Predicted UDP-gluc 82.5 1.4 3E-05 48.0 4.0 32 238-269 2-33 (414)
391 TIGR03143 AhpF_homolog putativ 82.4 1.3 2.8E-05 51.8 4.1 34 237-270 144-177 (555)
392 TIGR01292 TRX_reduct thioredox 82.3 1.5 3.2E-05 46.3 4.2 33 237-269 142-174 (300)
393 PRK06130 3-hydroxybutyryl-CoA 82.2 1.5 3.2E-05 47.1 4.2 32 238-269 6-37 (311)
394 COG1252 Ndh NADH dehydrogenase 82.1 1.1 2.4E-05 49.5 3.2 69 420-507 220-296 (405)
395 PF13241 NAD_binding_7: Putati 82.0 0.96 2.1E-05 39.9 2.2 33 236-268 7-39 (103)
396 PRK00094 gpsA NAD(P)H-dependen 81.9 1.6 3.6E-05 46.9 4.5 32 238-269 3-34 (325)
397 TIGR02356 adenyl_thiF thiazole 81.8 1.8 3.9E-05 43.3 4.4 35 235-269 20-55 (202)
398 PLN02546 glutathione reductase 81.7 1.5 3.4E-05 50.9 4.4 32 238-269 254-285 (558)
399 PRK14727 putative mercuric red 81.5 1.6 3.5E-05 49.9 4.4 32 237-268 189-220 (479)
400 PLN02545 3-hydroxybutyryl-CoA 81.4 1.7 3.7E-05 46.2 4.3 31 239-269 7-37 (295)
401 PRK12770 putative glutamate sy 81.4 1.7 3.6E-05 47.6 4.3 33 237-269 173-206 (352)
402 TIGR03026 NDP-sugDHase nucleot 81.2 1.6 3.5E-05 48.9 4.2 32 238-269 2-33 (411)
403 PRK11064 wecC UDP-N-acetyl-D-m 81.1 1.6 3.5E-05 48.9 4.1 32 238-269 5-36 (415)
404 KOG1336 Monodehydroascorbate/f 81.0 1.8 3.9E-05 48.1 4.3 57 236-292 213-269 (478)
405 cd01080 NAD_bind_m-THF_DH_Cycl 81.0 2.1 4.6E-05 41.4 4.4 34 235-268 43-77 (168)
406 TIGR01316 gltA glutamate synth 80.7 1.8 3.9E-05 49.1 4.4 33 237-269 273-305 (449)
407 TIGR01763 MalateDH_bact malate 80.6 1.9 4.1E-05 46.2 4.3 31 238-268 3-34 (305)
408 TIGR02279 PaaC-3OHAcCoADH 3-hy 80.3 1.8 3.9E-05 49.7 4.2 32 238-269 7-38 (503)
409 TIGR01438 TGR thioredoxin and 80.2 2.1 4.6E-05 49.0 4.8 31 238-268 182-212 (484)
410 PTZ00052 thioredoxin reductase 80.2 1.9 4.1E-05 49.7 4.4 31 238-268 184-214 (499)
411 TIGR00518 alaDH alanine dehydr 79.7 2.1 4.5E-05 47.2 4.3 34 236-269 167-200 (370)
412 TIGR03736 PRTRC_ThiF PRTRC sys 79.6 2.3 5E-05 43.8 4.3 35 235-269 10-55 (244)
413 PF01262 AlaDh_PNT_C: Alanine 79.4 2.4 5.2E-05 41.0 4.2 34 236-269 20-53 (168)
414 TIGR01915 npdG NADPH-dependent 79.4 2.2 4.8E-05 43.2 4.2 31 239-269 3-34 (219)
415 PRK14619 NAD(P)H-dependent gly 79.2 2.3 5.1E-05 45.5 4.5 32 238-269 6-37 (308)
416 COG3486 IucD Lysine/ornithine 78.5 3.3 7.2E-05 45.2 5.2 39 233-271 2-41 (436)
417 TIGR01423 trypano_reduc trypan 78.5 2.6 5.5E-05 48.3 4.8 34 237-270 188-224 (486)
418 PRK08644 thiamine biosynthesis 78.5 2.7 5.9E-05 42.4 4.4 35 235-269 27-62 (212)
419 cd05311 NAD_bind_2_malic_enz N 78.0 2.5 5.5E-05 43.1 4.1 33 237-269 26-61 (226)
420 PRK07417 arogenate dehydrogena 77.9 2.3 4.9E-05 44.9 3.8 32 238-269 2-33 (279)
421 PTZ00318 NADH dehydrogenase-li 77.9 2.7 5.8E-05 47.3 4.6 33 238-270 175-221 (424)
422 PRK12549 shikimate 5-dehydroge 77.8 2.7 5.8E-05 44.5 4.4 33 237-269 128-161 (284)
423 KOG3923 D-aspartate oxidase [A 77.8 2.1 4.5E-05 44.7 3.3 33 236-268 3-42 (342)
424 TIGR02355 moeB molybdopterin s 77.8 2.9 6.2E-05 43.1 4.5 34 236-269 24-58 (240)
425 PRK08268 3-hydroxy-acyl-CoA de 77.7 2.4 5.3E-05 48.7 4.3 31 239-269 10-40 (507)
426 PRK11730 fadB multifunctional 77.6 2.3 5E-05 51.1 4.2 32 238-269 315-346 (715)
427 TIGR02437 FadB fatty oxidation 77.6 2.3 5.1E-05 51.0 4.2 32 238-269 315-346 (714)
428 PRK08328 hypothetical protein; 77.6 2.8 6.1E-05 42.9 4.3 34 236-269 27-61 (231)
429 PRK12831 putative oxidoreducta 77.5 2.6 5.6E-05 48.0 4.4 34 236-269 281-314 (464)
430 COG1250 FadB 3-hydroxyacyl-CoA 77.4 2.5 5.4E-05 45.0 3.9 32 238-269 5-36 (307)
431 cd05292 LDH_2 A subgroup of L- 77.0 2.9 6.2E-05 44.9 4.4 32 238-269 2-35 (308)
432 PRK07531 bifunctional 3-hydrox 77.0 2.5 5.5E-05 48.5 4.2 32 238-269 6-37 (495)
433 PRK05690 molybdopterin biosynt 76.7 3.4 7.3E-05 42.7 4.6 35 235-269 31-66 (245)
434 PRK02472 murD UDP-N-acetylmura 76.7 2.7 5.8E-05 47.6 4.3 32 238-269 7-38 (447)
435 cd00757 ThiF_MoeB_HesA_family 76.6 3.1 6.8E-05 42.4 4.4 34 236-269 21-55 (228)
436 cd00401 AdoHcyase S-adenosyl-L 76.5 2.9 6.2E-05 46.6 4.3 34 236-269 202-235 (413)
437 PRK12548 shikimate 5-dehydroge 76.1 3.2 6.9E-05 44.1 4.3 32 237-268 127-159 (289)
438 KOG2304 3-hydroxyacyl-CoA dehy 76.0 2.7 5.9E-05 42.0 3.4 35 235-269 10-44 (298)
439 cd01486 Apg7 Apg7 is an E1-lik 75.8 3.5 7.6E-05 43.6 4.4 31 239-269 2-33 (307)
440 PF03446 NAD_binding_2: NAD bi 75.2 3.8 8.2E-05 39.4 4.3 32 238-269 3-34 (163)
441 TIGR02441 fa_ox_alpha_mit fatt 74.9 3.1 6.7E-05 50.1 4.3 32 238-269 337-368 (737)
442 TIGR01381 E1_like_apg7 E1-like 74.7 3.5 7.6E-05 48.0 4.4 35 235-269 337-372 (664)
443 cd01485 E1-1_like Ubiquitin ac 74.5 3.8 8.3E-05 40.8 4.2 34 236-269 19-53 (198)
444 COG2085 Predicted dinucleotide 74.3 3.6 7.8E-05 41.0 3.8 30 239-268 4-33 (211)
445 cd01492 Aos1_SUMO Ubiquitin ac 74.2 3.9 8.5E-05 40.7 4.2 35 235-269 20-55 (197)
446 PLN02353 probable UDP-glucose 74.2 3.2 7E-05 47.2 4.0 32 238-269 3-36 (473)
447 cd05191 NAD_bind_amino_acid_DH 74.2 5.3 0.00011 33.8 4.4 32 236-267 23-55 (86)
448 PLN02256 arogenate dehydrogena 74.1 6.3 0.00014 42.2 6.0 32 237-268 37-68 (304)
449 PRK12550 shikimate 5-dehydroge 74.0 6.1 0.00013 41.5 5.8 32 238-269 124-156 (272)
450 cd05291 HicDH_like L-2-hydroxy 74.0 3.6 7.9E-05 44.0 4.2 31 239-269 3-35 (306)
451 PRK08223 hypothetical protein; 73.7 3.9 8.5E-05 43.1 4.2 35 235-269 26-61 (287)
452 TIGR02853 spore_dpaA dipicolin 73.6 3.7 8E-05 43.5 4.1 33 237-269 152-184 (287)
453 cd01490 Ube1_repeat2 Ubiquitin 73.4 3.8 8.2E-05 45.8 4.2 31 239-269 2-38 (435)
454 cd01484 E1-2_like Ubiquitin ac 73.4 4.1 8.8E-05 41.8 4.2 31 239-269 2-33 (234)
455 cd01339 LDH-like_MDH L-lactate 73.3 3.4 7.3E-05 44.1 3.7 31 239-269 1-32 (300)
456 TIGR01318 gltD_gamma_fam gluta 73.2 14 0.00031 42.1 9.0 70 416-491 327-410 (467)
457 PF13478 XdhC_C: XdhC Rossmann 73.1 3.8 8.3E-05 38.2 3.6 31 239-269 1-31 (136)
458 TIGR01505 tartro_sem_red 2-hyd 72.9 3.5 7.7E-05 43.7 3.8 31 239-269 2-32 (291)
459 cd01488 Uba3_RUB Ubiquitin act 72.7 4.5 9.7E-05 42.8 4.4 31 239-269 2-33 (291)
460 COG2072 TrkA Predicted flavopr 72.6 4 8.7E-05 46.2 4.3 35 236-270 175-209 (443)
461 PRK11749 dihydropyrimidine deh 72.3 4.2 9.1E-05 46.2 4.4 34 236-269 273-307 (457)
462 PRK09496 trkA potassium transp 72.2 4.2 9.1E-05 46.0 4.4 32 238-269 2-33 (453)
463 PRK08017 oxidoreductase; Provi 72.1 4.5 9.8E-05 41.5 4.3 32 238-269 4-36 (256)
464 cd01489 Uba2_SUMO Ubiquitin ac 72.1 4.3 9.3E-05 43.4 4.1 31 239-269 2-33 (312)
465 PRK06223 malate dehydrogenase; 71.7 4.5 9.7E-05 43.3 4.2 32 238-269 4-36 (307)
466 PLN02520 bifunctional 3-dehydr 71.7 4.3 9.3E-05 47.0 4.3 32 237-268 380-411 (529)
467 PF03807 F420_oxidored: NADP o 71.7 5.5 0.00012 34.2 4.0 31 239-269 2-36 (96)
468 PRK15057 UDP-glucose 6-dehydro 71.6 4.2 9.1E-05 45.1 4.1 30 239-269 3-32 (388)
469 TIGR02032 GG-red-SF geranylger 71.3 11 0.00024 39.4 7.1 63 413-491 95-157 (295)
470 TIGR00507 aroE shikimate 5-deh 71.2 4.7 0.0001 42.3 4.2 33 237-269 118-150 (270)
471 PTZ00082 L-lactate dehydrogena 71.0 5.1 0.00011 43.2 4.5 34 237-270 7-41 (321)
472 COG0686 Ald Alanine dehydrogen 71.0 3.7 8E-05 43.2 3.1 35 235-269 167-201 (371)
473 PRK10669 putative cation:proto 70.9 4.1 8.9E-05 47.6 4.0 34 236-269 417-450 (558)
474 PLN02172 flavin-containing mon 70.7 4.3 9.4E-05 46.1 4.0 34 236-269 204-237 (461)
475 cd01078 NAD_bind_H4MPT_DH NADP 70.4 5.8 0.00013 39.2 4.4 32 237-268 29-61 (194)
476 COG0287 TyrA Prephenate dehydr 70.3 5.6 0.00012 41.9 4.4 33 237-269 4-36 (279)
477 COG3634 AhpF Alkyl hydroperoxi 70.2 6.4 0.00014 42.0 4.7 40 231-270 349-388 (520)
478 PRK15461 NADH-dependent gamma- 70.0 5.1 0.00011 42.7 4.2 32 238-269 3-34 (296)
479 TIGR00936 ahcY adenosylhomocys 70.0 5.1 0.00011 44.5 4.2 34 236-269 195-228 (406)
480 cd00755 YgdL_like Family of ac 69.4 5.9 0.00013 40.5 4.3 34 236-269 11-45 (231)
481 PRK11154 fadJ multifunctional 69.4 4.7 0.0001 48.5 4.1 32 238-269 311-343 (708)
482 PRK11199 tyrA bifunctional cho 69.4 5.1 0.00011 44.2 4.1 31 238-268 100-131 (374)
483 KOG1346 Programmed cell death 69.0 12 0.00025 41.0 6.4 58 419-491 403-460 (659)
484 PRK08762 molybdopterin biosynt 69.0 5.7 0.00012 43.9 4.4 35 235-269 134-169 (376)
485 PTZ00142 6-phosphogluconate de 69.0 4.8 0.0001 45.7 3.9 33 237-269 2-34 (470)
486 PRK06153 hypothetical protein; 69.0 6.1 0.00013 43.3 4.4 35 235-269 175-210 (393)
487 PRK07326 short chain dehydroge 68.8 6.1 0.00013 39.9 4.4 32 238-269 8-40 (237)
488 PRK05600 thiamine biosynthesis 68.7 5.7 0.00012 43.7 4.3 35 235-269 40-75 (370)
489 TIGR02440 FadJ fatty oxidation 68.7 5.2 0.00011 48.0 4.3 32 238-269 306-338 (699)
490 PRK06057 short chain dehydroge 68.5 6 0.00013 40.7 4.3 32 238-269 9-41 (255)
491 PRK05476 S-adenosyl-L-homocyst 68.5 6 0.00013 44.2 4.4 34 236-269 212-245 (425)
492 KOG2018 Predicted dinucleotide 68.4 5.8 0.00013 41.5 3.9 34 233-267 72-106 (430)
493 PRK07878 molybdopterin biosynt 68.3 5.9 0.00013 44.0 4.3 35 235-269 41-76 (392)
494 PRK04308 murD UDP-N-acetylmura 68.1 6 0.00013 44.8 4.5 33 238-270 7-39 (445)
495 PRK00258 aroE shikimate 5-dehy 67.6 6.2 0.00013 41.6 4.2 33 237-269 124-157 (278)
496 PRK01710 murD UDP-N-acetylmura 67.6 6.2 0.00013 44.9 4.4 32 238-269 16-47 (458)
497 PF00670 AdoHcyase_NAD: S-aden 67.5 6.3 0.00014 37.8 3.7 34 236-269 23-56 (162)
498 PRK06505 enoyl-(acyl carrier p 67.4 6.7 0.00015 41.0 4.4 31 238-268 9-42 (271)
499 PRK12749 quinate/shikimate deh 67.3 9.9 0.00022 40.3 5.6 32 237-268 125-157 (288)
500 PRK05562 precorrin-2 dehydroge 67.3 6.9 0.00015 39.7 4.2 30 237-266 26-55 (223)
No 1
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.9e-63 Score=574.60 Aligned_cols=470 Identities=19% Similarity=0.215 Sum_probs=333.1
Q ss_pred CcceeEEEECCCchHHHHHHHHHH-CCCcEEEEcccCCCCCCC-C---CC-----cCCCchhhhhhhCCceecCCCcEEE
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLAS-SGQKVLVLEKGNYFVAED-Y---SS-----LEGPSMHELYESGGLLSTLDGKFMV 303 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe-~G~kVlVLEkG~~~~~~~-~---~~-----~~~~~~~~~y~~~~~~~~~~~~~~~ 303 (748)
+.+|||||||||++|+++|.+||+ +|++|||||+|+.....+ . +. .....++|.|.+.++....++.+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC 82 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeeec
Confidence 456999999999999999999999 799999999997532111 1 10 1122345666655554455667888
Q ss_pred eccCcccchhhhhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcC-------------CCCccCchhHH
Q 004496 304 FAGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVT-------------EHCTEEGFQNQ 370 (748)
Q Consensus 304 ~~G~~lGGgs~in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~-------------~~~~~~~~~~~ 370 (748)
.+|+++||+|.+|++.+.|..+.+|+.|....+.+.|.++++.++|++++..+.-. ..........+
T Consensus 83 ~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~~ 162 (560)
T PRK02106 83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQ 162 (560)
T ss_pred ccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999998766777789999999999998765211 00012234467
Q ss_pred HHHHHHHHcCCCccccCCCCCCCccceeccCCCCCCccccccccchHHHHhCC-CEEEcCcEEEEEEEecCCCCCCCceE
Q 004496 371 VLRKGCENLGFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNG-AVILAGFKAEKFILVDNKDSIRSKKC 449 (748)
Q Consensus 371 ~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~g~~~g~k~~~~~~~L~~A~~~G-~~i~~~~~V~~I~~~~~~~g~~~~rv 449 (748)
.+.++++++|++... +.+.....+++.|...|..|.|.++..+||..+.+++ ++|++++.|++|+++++ ++
T Consensus 163 ~~~~a~~~lG~~~~~-~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-------~a 234 (560)
T PRK02106 163 AFVEAGVQAGYPRTD-DLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-------RA 234 (560)
T ss_pred HHHHHHHHcCCCcCC-CCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-------eE
Confidence 888999999998765 4454445566667778899999999999999887655 99999999999999743 89
Q ss_pred EEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC---------------CccccccccCccceEEeecCCC
Q 004496 450 LGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPVLLAWGYIPDH 514 (748)
Q Consensus 450 ~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~---------------p~VG~nL~~Hp~~~~~~~~~~~ 514 (748)
+||++.+. .+....+.||+||||||+++||+||++|||++ |+||+||+|||...+...+++.
T Consensus 235 ~GV~~~~~---~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~ 311 (560)
T PRK02106 235 VGVEYERG---GGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQP 311 (560)
T ss_pred EEEEEEeC---CcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCC
Confidence 99999862 23445667899999999999999999999986 5699999999998765554432
Q ss_pred cccccc-ccc------------CCCcEeEeecccccCccccceecCCC-CCcccccccCCCccchHHHHHHHhcCCeeEE
Q 004496 515 VSELKG-KTF------------EGGIITSIHKVVSEDSKVQAIIESPA-MGPASFAASFPWISGRELKDRMLRYGRIAQL 580 (748)
Q Consensus 515 ~~~~~~-~~~------------~gg~~t~~~~~~~~~~~~~~~~e~~~-~~p~~~~~~~p~~~g~~~k~~~~~~~~~~~~ 580 (748)
...... ..+ ..|.++..... ..+....... ..|.....+.|.......... .........
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 385 (560)
T PRK02106 312 VSLYPALKWWNKPKIGAEWLFTGTGLGASNHFE-----AGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNA-VKGHGFQAH 385 (560)
T ss_pred cccccccchhhhhHHHHHHHhcCCCCccccccc-----eeeEEecCCCCCCCCeEEEEeeccccccCCCC-CCCCeEEEE
Confidence 110000 000 01111100000 0000000000 011111111111000000000 000011223
Q ss_pred EEEeeeCCCceEEe-------eeeE--eecCChhhHHHHHHHHHHHHHHHHHcCCccccc-ccCCCCcccccCCChHHHH
Q 004496 581 FALVRDQGSGEVKV-------EGKI--KYRLSKNDKENLKTGLRQALRILIAAGAEEVGT-YRSDGHRIRCKGIKEEDLE 650 (748)
Q Consensus 581 ~~l~~d~~~G~V~~-------~p~I--~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~-~~~~~~~~~~~~~~d~~~~ 650 (748)
+.+++|.++|+|++ .|.| +|..++.|++.++++++.+++|+.+++++.+.. ...++.. ..+|++++
T Consensus 386 ~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 461 (560)
T PRK02106 386 VGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGAD----VQTDEEID 461 (560)
T ss_pred EEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccCCCcc----cCCHHHHH
Confidence 45679999999975 3655 799999999999999999999999887665421 1122211 24788999
Q ss_pred HHHHhhhhhcCCCCCCCCcccccccccccCccCCCCCCCcccCCCCceeecCCcEEecCCCCCCCCCCCchhhHHHHHHH
Q 004496 651 EFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYC 730 (748)
Q Consensus 651 ~~~~~~~~~~g~~~~~~~~~~~~~~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~VaDaSvfPt~~~~NP~lTi~AlA~~ 730 (748)
+|+++.. .+++|++||||||++| +||||++|||||++||||+|+||||+.+++||++||||+|++
T Consensus 462 ~~i~~~~--------------~~~~H~~GTcrMG~d~-~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer 526 (560)
T PRK02106 462 AFVREHA--------------ETAYHPSCTCKMGTDP-MAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK 526 (560)
T ss_pred HHHHhcc--------------CcCcccCCCeecCCCC-CeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence 9998752 4679999999999987 899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 004496 731 ISKKIADSL 739 (748)
Q Consensus 731 iA~~ia~~l 739 (748)
+|+.|.+..
T Consensus 527 aAd~I~~~~ 535 (560)
T PRK02106 527 AADLIRGRT 535 (560)
T ss_pred HHHHHhccC
Confidence 888887653
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.1e-62 Score=562.95 Aligned_cols=466 Identities=18% Similarity=0.198 Sum_probs=329.0
Q ss_pred eEEEECCCchHHHHHHHHHHCC-CcEEEEcccCCCCCC-CCCC--------cCCCchhhhhhhCCceecCCCcEEEeccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGNYFVAE-DYSS--------LEGPSMHELYESGGLLSTLDGKFMVFAGS 307 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~~~~~~-~~~~--------~~~~~~~~~y~~~~~~~~~~~~~~~~~G~ 307 (748)
||||||||++|+++|.+||++| ++|||||+|+..... .+.. ...+.++|.|.+.++....++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 8999999999999999999998 799999999854321 1110 11233467777666666667788999999
Q ss_pred cccchhhhhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCC------------CccCchhHHHHHHH
Q 004496 308 AVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEH------------CTEEGFQNQVLRKG 375 (748)
Q Consensus 308 ~lGGgs~in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~------------~~~~~~~~~~l~~~ 375 (748)
++||+|.+|+++++|+.+.+|+.|....+.+.|.++++.++|++++..++.... ........+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999999999876677888999999999999877653210 11123345778899
Q ss_pred HHHcCCCccccCCCCCCCccceeccCCCCCCccccccccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEE
Q 004496 376 CENLGFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTA 454 (748)
Q Consensus 376 ~~~lG~~~~~~p~n~~~~~~~g~~~~g~~~g~k~~~~~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~ 454 (748)
++++|++.... .+.....+++.|...|..|.|.++..+||..|.++ |++|++++.|++|+++++ +++||++
T Consensus 161 ~~~~G~~~~~~-~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-------ra~GV~~ 232 (532)
T TIGR01810 161 GVEAGYNKTPD-VNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-------RATGVEF 232 (532)
T ss_pred HHHcCCCccCC-CCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-------eEEEEEE
Confidence 99999987663 34444445666666788999999999999998855 599999999999998744 9999999
Q ss_pred EeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC---------------CccccccccCccceEEeecCCCccccc
Q 004496 455 TALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPVLLAWGYIPDHVSELK 519 (748)
Q Consensus 455 ~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~---------------p~VG~nL~~Hp~~~~~~~~~~~~~~~~ 519 (748)
.+ +.+....+.||+||||||+++||+||++|||++ |+||+||||||.+.+...+.+......
T Consensus 233 ~~---~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 233 KK---GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP 309 (532)
T ss_pred Ee---CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence 76 212333457899999999999999999999986 679999999999876655543211000
Q ss_pred cc----------cc---CCCcEeEeecccccCccccceecCCCCCcccccccCCCccchHHHHHHHhcCCeeEEEEEeee
Q 004496 520 GK----------TF---EGGIITSIHKVVSEDSKVQAIIESPAMGPASFAASFPWISGRELKDRMLRYGRIAQLFALVRD 586 (748)
Q Consensus 520 ~~----------~~---~gg~~t~~~~~~~~~~~~~~~~e~~~~~p~~~~~~~p~~~g~~~k~~~~~~~~~~~~~~l~~d 586 (748)
.. .| ..+.... ..+. ...+. ........|.....+.|+.......... ..........+++|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~--~~~~-~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P 384 (532)
T TIGR01810 310 SLNWLKQPFIGAQWLFGRKGAGAS--NHFE-GGGFV-RSNDDVDYPNIQYHFLPVAIRYDGTKAP-KAHGFQVHVGPMYS 384 (532)
T ss_pred ccchhhhhHHHHHHHhcCCCCccc--cccc-eeEEE-ecCCCCCCCCeEEEEEeeeeccCCCCCC-CCCcEEEEEeecCC
Confidence 00 00 0111100 0000 00000 0000000111111112211100000000 00011223456789
Q ss_pred CCCceEEee-------eeE--eecCChhhHHHHHHHHHHHHHHHHHcCCccccc-ccCCCCcccccCCChHHHHHHHHhh
Q 004496 587 QGSGEVKVE-------GKI--KYRLSKNDKENLKTGLRQALRILIAAGAEEVGT-YRSDGHRIRCKGIKEEDLEEFIGSI 656 (748)
Q Consensus 587 ~~~G~V~~~-------p~I--~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~-~~~~~~~~~~~~~~d~~~~~~~~~~ 656 (748)
.++|+|+++ |.| +|..++.|++.++++++.+++++...+...+.. ...+++. ..+|+++++|+++.
T Consensus 385 ~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~----~~~d~~~~~~ir~~ 460 (532)
T TIGR01810 385 NSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGPE----VQTDEEIDEFVRRH 460 (532)
T ss_pred CCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccCCCCC----CCCHHHHHHHHhhh
Confidence 999999752 444 799999999999999999999998776554321 1122221 25789999999875
Q ss_pred hhhcCCCCCCCCcccccccccccCccCCC-CCCCcccCCCCceeecCCcEEecCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 004496 657 EVVGGMASRGEHWSVYFSAHQMGSCRMGA-TEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKKI 735 (748)
Q Consensus 657 ~~~~g~~~~~~~~~~~~~~H~~GTcrMG~-~~~~gVVD~~~rv~g~~nL~VaDaSvfPt~~~~NP~lTi~AlA~~iA~~i 735 (748)
. .+.+|++||||||+ ++.+||||+++||||++|||||||||||+.+++||+.|++|+|+++|+.|
T Consensus 461 ~--------------~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I 526 (532)
T TIGR01810 461 G--------------ETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADII 526 (532)
T ss_pred c--------------ccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 2 46899999999997 78899999999999999999999999999999999999988776666665
Q ss_pred HH
Q 004496 736 AD 737 (748)
Q Consensus 736 a~ 737 (748)
.+
T Consensus 527 ~~ 528 (532)
T TIGR01810 527 RG 528 (532)
T ss_pred hc
Confidence 43
No 3
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=1.9e-60 Score=523.41 Aligned_cols=483 Identities=20% Similarity=0.237 Sum_probs=347.4
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHC-CCcEEEEcccCCCCC-CCC----CCcCCCchhhhhhhCCcee----cCCCcEE
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEKGNYFVA-EDY----SSLEGPSMHELYESGGLLS----TLDGKFM 302 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~-G~kVlVLEkG~~~~~-~~~----~~~~~~~~~~~y~~~~~~~----~~~~~~~ 302 (748)
...+||+||||||.+||++|.+|+|. ..+|||||+|+..+. .+. ..+....++|.|.+.+... ..+..+.
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~ 133 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCY 133 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCcee
Confidence 45689999999999999999999997 789999999986521 111 2234556788888877654 6778899
Q ss_pred EeccCcccchhhhhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCCC---------------ccCch
Q 004496 303 VFAGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHC---------------TEEGF 367 (748)
Q Consensus 303 ~~~G~~lGGgs~in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~~---------------~~~~~ 367 (748)
|.+|+++||+|.+|.|+|.|+...||++|.+. +-|.|.+++..++|.++++..--.... .....
T Consensus 134 wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~-gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~ 212 (623)
T KOG1238|consen 134 WPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAE-GNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNN 212 (623)
T ss_pred cCccceecccccccceEEecCCccchHHHHHh-cCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCc
Confidence 99999999999999999999999999999976 567888999999999887643211110 11122
Q ss_pred hHHHHHHHHHHcCCCccccCCCCCCCccceeccCCCCCCccccccccchHHHHh-C-CCEEEcCcEEEEEEEecCCCCCC
Q 004496 368 QNQVLRKGCENLGFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVD-N-GAVILAGFKAEKFILVDNKDSIR 445 (748)
Q Consensus 368 ~~~~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~g~~~g~k~~~~~~~L~~A~~-~-G~~i~~~~~V~~I~~~~~~~g~~ 445 (748)
....+.++.+++|.... ++|.....+..+.....+.|.+.++..+|++.+.. + ++.+..++.|++|++|..+
T Consensus 213 ~~~~~~~ag~e~G~~~~--D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~---- 286 (623)
T KOG1238|consen 213 LFTAFHRAGTEIGGSIF--DRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAG---- 286 (623)
T ss_pred hhhHhHHhHHhcCCCcc--CCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCC----
Confidence 34677888899996554 46766666666666777889999999999998875 3 6999999999999998653
Q ss_pred CceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCCCCHHHHHhcCCC---------------CCccccccccCccceEEe
Q 004496 446 SKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMISSGLE---------------NPNIGTNLHLHPVLLAWG 509 (748)
Q Consensus 446 ~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai~Sp~LLl~SGi~---------------~p~VG~nL~~Hp~~~~~~ 509 (748)
+++.||++.. ..++.++++| |+||||||+|+||+|||.|||+ +|+||+||+||+...++-
T Consensus 287 -~~a~gv~~~~---~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~ 362 (623)
T KOG1238|consen 287 -KRAKGVEFVR---DGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFV 362 (623)
T ss_pred -ceEEEEEEEe---cCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceee
Confidence 4999999986 2257889998 8999999999999999999997 388999999999987665
Q ss_pred ecCCCccc----ccc-------cccCCCcEeEeecccccCc--cccc-eecCCCCCcccccccCCCccch-------HHH
Q 004496 510 YIPDHVSE----LKG-------KTFEGGIITSIHKVVSEDS--KVQA-IIESPAMGPASFAASFPWISGR-------ELK 568 (748)
Q Consensus 510 ~~~~~~~~----~~~-------~~~~gg~~t~~~~~~~~~~--~~~~-~~e~~~~~p~~~~~~~p~~~g~-------~~k 568 (748)
+.++.... +.+ .....|.+++.+.+.-.+- .+.. ...-|++.-.+....++-..+. ++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y 442 (623)
T KOG1238|consen 363 FSTNPVELSLIRLVGITTVGQYLEGGSGPLASPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIY 442 (623)
T ss_pred ecCCCccccccccccchHHHHHHHcCCCCcccCcceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHH
Confidence 55443211 000 0001222222110000000 0000 0000111100000011100011 111
Q ss_pred HHHHh---cCC-eeEEEEEeeeCCCceEEe-------eeeE--eecCChhhHHHHHHHHHHHHHHHHHcCCcccccccCC
Q 004496 569 DRMLR---YGR-IAQLFALVRDQGSGEVKV-------EGKI--KYRLSKNDKENLKTGLRQALRILIAAGAEEVGTYRSD 635 (748)
Q Consensus 569 ~~~~~---~~~-~~~~~~l~~d~~~G~V~~-------~p~I--~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~~~~~ 635 (748)
+.+.. ... ...+..+++|+|+|++.+ .|.| ||..+|+|++.+++|++.+.++.+...++.++.....
T Consensus 443 ~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~ 522 (623)
T KOG1238|consen 443 QALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWK 522 (623)
T ss_pred HHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhcc
Confidence 11111 112 233455779999999976 3777 7999999999999999999999887777666544333
Q ss_pred CCccccc---CCChHHHHHHHHhhhhhcCCCCCCCCcccccccccccCccCCC-CCCCcccCCCCceeecCCcEEecCCC
Q 004496 636 GHRIRCK---GIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGA-TEEDGAVDENGESWEAEGLFVCDGSV 711 (748)
Q Consensus 636 ~~~~~~~---~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~H~~GTcrMG~-~~~~gVVD~~~rv~g~~nL~VaDaSv 711 (748)
.+.-.|. -.+|+.+++|++... .+.+|+.|||+||+ .+.++|||+++||||++||||+|||+
T Consensus 523 ~~~~~c~~~~~~sd~yw~c~~R~~~--------------~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSi 588 (623)
T KOG1238|consen 523 KPVPGCDLLAFLSDAYWECFCRHTV--------------VTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASI 588 (623)
T ss_pred ccCCCcccccCCCHHHHHHHHHhcc--------------ceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccc
Confidence 2222333 468999999999863 68999999999996 46789999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHhhhhc
Q 004496 712 LPSAIGINPMITIESTSYCISKKIADSLKKDIR 744 (748)
Q Consensus 712 fPt~~~~NP~lTi~AlA~~iA~~ia~~l~~~~~ 744 (748)
||.+++.|| .|.++||||+.|++|+++..
T Consensus 589 mP~~psgN~----nA~v~MIgek~ad~Ik~~~~ 617 (623)
T KOG1238|consen 589 MPESPSGNP----NAPVMMIGEKAADMIKEEWL 617 (623)
T ss_pred cCCCCCCCc----cHHHHHHHHHHHHHHHHHhh
Confidence 999999999 67777888999999998754
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-57 Score=512.90 Aligned_cols=470 Identities=22% Similarity=0.287 Sum_probs=334.2
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC------CCCCCcC-CCchhhhhhhCCceecCCCcEEEec
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA------EDYSSLE-GPSMHELYESGGLLSTLDGKFMVFA 305 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~------~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~ 305 (748)
+..+||+||||||.+|+++|.+|+++|++|+|||+|..... ..+.... .+..+|.|.+.+.....++.+.+.+
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~r 83 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWPR 83 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccCCCCccccccc
Confidence 45689999999999999999999988999999999974322 2222222 2366788887766667778889999
Q ss_pred cCcccchhhhhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCCC----------------ccCchhH
Q 004496 306 GSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHC----------------TEEGFQN 369 (748)
Q Consensus 306 G~~lGGgs~in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~~----------------~~~~~~~ 369 (748)
|+++||+|.+|++.++|..+.+|+.|....|.+.|.+++..++|++.+..+++.... .......
T Consensus 84 gk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~ 163 (542)
T COG2303 84 GKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIA 163 (542)
T ss_pred cCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHHH
Confidence 999999999999999999999999999887877788899999999999877663220 0112356
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCccceeccCCCCCCccccccccchHHHHhCC-CEEEcCcEEEEEEEecCCCCCCCce
Q 004496 370 QVLRKGCENLGFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNG-AVILAGFKAEKFILVDNKDSIRSKK 448 (748)
Q Consensus 370 ~~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~g~~~g~k~~~~~~~L~~A~~~G-~~i~~~~~V~~I~~~~~~~g~~~~r 448 (748)
..+.++++++|++..+++.....+..|.+|...| .|.|+++..++|..|.+++ ++|++++.|++|+++++ +
T Consensus 164 ~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~-~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-------r 235 (542)
T COG2303 164 RAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTIC-NGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-------R 235 (542)
T ss_pred HHHHHHHHHcCCCcCcccccCCCCCcccceeecc-CCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-------e
Confidence 7788888999999988654433343344455566 9999999999999988887 99999999999999876 9
Q ss_pred EEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC---------------CCccccccccCccceEEeecCC
Q 004496 449 CLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE---------------NPNIGTNLHLHPVLLAWGYIPD 513 (748)
Q Consensus 449 v~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~---------------~p~VG~nL~~Hp~~~~~~~~~~ 513 (748)
++||++.....+ ..+..+.++.||||||+++||+||++||++ +|.||+||+||....+......
T Consensus 236 ~~gv~~~~~~~~-~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~~~ 314 (542)
T COG2303 236 AVGVEVEIGDGG-TIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATE 314 (542)
T ss_pred eEEEEEEeCCCC-ceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheeccC
Confidence 999999862211 135556679999999999999999999986 4789999999998765333222
Q ss_pred Cccc-cc---cccc---------CCCcEeEeecccccCccccceecCCCCCcccccccCCCccchHHHHHHHhcCCeeEE
Q 004496 514 HVSE-LK---GKTF---------EGGIITSIHKVVSEDSKVQAIIESPAMGPASFAASFPWISGRELKDRMLRYGRIAQL 580 (748)
Q Consensus 514 ~~~~-~~---~~~~---------~gg~~t~~~~~~~~~~~~~~~~e~~~~~p~~~~~~~p~~~g~~~k~~~~~~~~~~~~ 580 (748)
...+ .. .... ..|...+..... .+...+.....++.. ......++... ...........
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-gf~~~~~~~~~p~~~--~~~~~~~~~~~-----~~~~~~~~~~~ 386 (542)
T COG2303 315 PTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEG-GFVRSGPAGEYPDGQ--YHFAPLPLAIR-----AAGAEHGFTLH 386 (542)
T ss_pred ccccccccccccccccceeEEeecCCCcccccccc-cccccCccccCCCcc--ccccccccccc-----ccccCCccEEe
Confidence 2100 00 0000 001100000000 000000011111110 00000111100 00011112223
Q ss_pred EEEeeeCCCceEEe-------eeeE--eecCChhhHHHHHHHHHHHHHHHHHcCCcc-cccccCCCCcccccCCChHHHH
Q 004496 581 FALVRDQGSGEVKV-------EGKI--KYRLSKNDKENLKTGLRQALRILIAAGAEE-VGTYRSDGHRIRCKGIKEEDLE 650 (748)
Q Consensus 581 ~~l~~d~~~G~V~~-------~p~I--~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~-i~~~~~~~~~~~~~~~~d~~~~ 650 (748)
....++.++|.|.. .|.| +|..++.|+..+.++++..++|+...-... ...+..+++. ..+++++.
T Consensus 387 ~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~~~~~----~~~~~~~~ 462 (542)
T COG2303 387 VGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGPR----VTTDEDIS 462 (542)
T ss_pred eccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhcCCCc----cccHHHHH
Confidence 45668999999964 3556 699999999999999999999987322222 1222233332 24677899
Q ss_pred HHHHhhhhhcCCCCCCCCcccccccccccCccCCCCCCCcccCCCCceeecCCcEEecCCCCCCCCCCCchhhHHHHHHH
Q 004496 651 EFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYC 730 (748)
Q Consensus 651 ~~~~~~~~~~g~~~~~~~~~~~~~~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~VaDaSvfPt~~~~NP~lTi~AlA~~ 730 (748)
+|++... .+.+|+|||||||.||..+|+|++|||||++||||+|||+||+++++||++||+|+|++
T Consensus 463 ~~~~~~~--------------~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~r 528 (542)
T COG2303 463 AAIRFLA--------------RTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAER 528 (542)
T ss_pred HHHHhcc--------------CccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHH
Confidence 9998753 46789999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 004496 731 ISKKIAD 737 (748)
Q Consensus 731 iA~~ia~ 737 (748)
+|++|..
T Consensus 529 aA~~I~~ 535 (542)
T COG2303 529 AADHILG 535 (542)
T ss_pred HHHHHhh
Confidence 8888876
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=2.5e-52 Score=478.28 Aligned_cols=461 Identities=17% Similarity=0.196 Sum_probs=289.0
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC-C--CCC-cCCCchhhhhhhCCceecCCCcEEEeccCc
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE-D--YSS-LEGPSMHELYESGGLLSTLDGKFMVFAGSA 308 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~-~--~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~ 308 (748)
...+|||||||+|.+||++|.+|++ +.+|||||+|+..... . ... ......+|.|.+..+....+..+.+.+|++
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~q~~~~~~~~~~~rGr~ 130 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVPFGNANVSFLENFHIGLADTSPTSASQAFISTDGVINARARV 130 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCCCCCchhhhHHhhCCcccccCCccccccccCCCceeccccce
Confidence 3457999999999999999999999 6999999999742111 0 000 111223566665555444566788899999
Q ss_pred ccchhhhhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCCCccCchhHHHHHHHHHHcCCCccccCC
Q 004496 309 VGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLRKGCENLGFKVESVAR 388 (748)
Q Consensus 309 lGGgs~in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~ 388 (748)
+||||++|++.|.|+.+.++++ .| |.++...++++.+++..- ..+.. ......+.+++.++|++. .
T Consensus 131 LGGsS~iN~~~y~Rg~~~d~~~----~G---W~~~~~~~~~~~~e~~~~--~~~~~-~~~~~~~~~a~~e~G~~~----~ 196 (587)
T PLN02785 131 LGGGTCINAGFYSRASTRFIQK----AG---WDAKLVNESYPWVERQIV--HWPKV-APWQAALRDSLLEVGVSP----F 196 (587)
T ss_pred ecchhhhcCeEEEeCCHHHhcc----CC---CCcccccchHHHHhcccc--cCCCc-ChHHHHHHHHHHHcCCCc----c
Confidence 9999999999999999998865 11 333334444554443321 11111 233577889999999973 2
Q ss_pred CCC--C---CccceeccCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCcee
Q 004496 389 NTP--E---EHYCGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTR 463 (748)
Q Consensus 389 n~~--~---~~~~g~~~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~ 463 (748)
|.. . +...+.+... ..|.|.++. .++..+.+.+++|++++.|++|++++++ ..++++||++.+. .++
T Consensus 197 n~~~~d~~~G~~~g~~i~~-~~g~R~saa-~l~~~~~~~nl~Vl~~a~V~rIl~~~~~---~~~ra~GV~~~~~---~g~ 268 (587)
T PLN02785 197 NGFTYDHVYGTKVGGTIFD-EFGRRHTAA-ELLAAGNPNKLRVLLHATVQKIVFDTSG---KRPRATGVIFKDE---NGN 268 (587)
T ss_pred CCCCCCCccceeeeEEEeC-CCCEEcCHH-HHHhhcCCCCeEEEeCCEEEEEEEcCCC---CCceEEEEEEEEC---CCc
Confidence 211 1 1122222211 335554443 4555444556999999999999997631 1238999999762 223
Q ss_pred EEEE-----EccEEEEcCCCCCCHHHHHhcCCCC---------------CccccccccCccceEEeecCCCcc-cc-c--
Q 004496 464 KLQI-----KAKATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPVLLAWGYIPDHVS-EL-K-- 519 (748)
Q Consensus 464 ~~~i-----~Ak~VVlAaGai~Sp~LLl~SGi~~---------------p~VG~nL~~Hp~~~~~~~~~~~~~-~~-~-- 519 (748)
..++ .+|+||||||+++||+||++|||++ |+||+||+|||...+....+.... .. .
T Consensus 269 ~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~~~ 348 (587)
T PLN02785 269 QHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTV 348 (587)
T ss_pred eEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHhhh
Confidence 3332 2489999999999999999999974 789999999999876443332210 00 0
Q ss_pred ccccCCCcEeEeecccccCccccceecC--CCCCc--ccccccCCC-ccchHHHHHHH--------hcCCeeEEEEEeee
Q 004496 520 GKTFEGGIITSIHKVVSEDSKVQAIIES--PAMGP--ASFAASFPW-ISGRELKDRML--------RYGRIAQLFALVRD 586 (748)
Q Consensus 520 ~~~~~gg~~t~~~~~~~~~~~~~~~~e~--~~~~p--~~~~~~~p~-~~g~~~k~~~~--------~~~~~~~~~~l~~d 586 (748)
+.. ..|.+...... +......+.. ....+ ..+....|. .....+..... .+.....+..+++|
T Consensus 349 ~~~-~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P 424 (587)
T PLN02785 349 GIT-KMGVYIEASSG---FGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGP 424 (587)
T ss_pred hhh-ccccceecccc---cccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCC
Confidence 000 00111000000 0000000000 00000 000000000 00000000000 00001223456799
Q ss_pred CCCceEEe-------eeeE--eecCChhhHHHHHHHHHHHHHHHHHcCCcccccc-cCCCC------------cccccCC
Q 004496 587 QGSGEVKV-------EGKI--KYRLSKNDKENLKTGLRQALRILIAAGAEEVGTY-RSDGH------------RIRCKGI 644 (748)
Q Consensus 587 ~~~G~V~~-------~p~I--~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~~-~~~~~------------~~~~~~~ 644 (748)
.|+|+|++ .|.| +|..++.|++.++++++.+++++.......+... ..+.+ .......
T Consensus 425 ~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 504 (587)
T PLN02785 425 ISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTN 504 (587)
T ss_pred CcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCC
Confidence 99999976 3555 7999999999999999999999987765443210 00000 0011124
Q ss_pred ChHHHHHHHHhhhhhcCCCCCCCCcccccccccccCccCCCCCCCcccCCCCceeecCCcEEecCCCCCCCCCCCchhhH
Q 004496 645 KEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITI 724 (748)
Q Consensus 645 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~VaDaSvfPt~~~~NP~lTi 724 (748)
+|+++++|+++.. .+.+|++||||||. |||+++||||++||||||||+||..+++||+.|+
T Consensus 505 ~d~~l~~~ir~~~--------------~t~~H~~GTc~MG~-----VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv 565 (587)
T PLN02785 505 DTKSLEQFCKDTV--------------ITIWHYHGGCHVGK-----VVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATV 565 (587)
T ss_pred CHHHHHHHHHHhc--------------ccccCCcccccCCC-----eECCCCeEeccCCeEEeecccCCCCCCCccHHHH
Confidence 6789999998753 47899999999994 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004496 725 ESTSYCISKKIADSL 739 (748)
Q Consensus 725 ~AlA~~iA~~ia~~l 739 (748)
+|+|+++|++|.+..
T Consensus 566 ~miaer~A~~Il~~~ 580 (587)
T PLN02785 566 MMMGRYMGVKILRER 580 (587)
T ss_pred HHHHHHHHHHHHHHh
Confidence 988888887776654
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=1.8e-48 Score=437.53 Aligned_cols=448 Identities=17% Similarity=0.243 Sum_probs=288.1
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCC-----CCCcC-CCchhhh-------hh--hCCc--------
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAED-----YSSLE-GPSMHEL-------YE--SGGL-------- 293 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~-----~~~~~-~~~~~~~-------y~--~~~~-------- 293 (748)
|||||||+|++|+++|+.|+++|++|+|||+|....... +.... ....+.. +. +.+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999999999999998654210 11000 0000000 00 0000
Q ss_pred -----------eecCCC-------cEE---EeccCcccchhhhhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHh
Q 004496 294 -----------LSTLDG-------KFM---VFAGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKV 352 (748)
Q Consensus 294 -----------~~~~~~-------~~~---~~~G~~lGGgs~in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v 352 (748)
....++ ... ..+-+.+||+|.++.+.+.|..+.++ .|.. .+||. .++++.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g~~-~dWPI-~y~eL~PyY~~A 157 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PKLS-DDAAE-DDAEWDRLYTKA 157 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cCCC-CCCCC-CHHHHHHHHHHH
Confidence 000000 011 12345789988887778888877543 4443 35663 678999999999
Q ss_pred hhhcCcCCCCccCch-hHHHHHHHHHHc-CC-CccccCCCCCCCccceeccCCCCCCccccccccchHHHHh----CC-C
Q 004496 353 SKRIGVTEHCTEEGF-QNQVLRKGCENL-GF-KVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVD----NG-A 424 (748)
Q Consensus 353 ~~~lgv~~~~~~~~~-~~~~l~~~~~~l-G~-~~~~~p~n~~~~~~~g~~~~g~~~g~k~~~~~~~L~~A~~----~G-~ 424 (748)
+..+++++....... ....+....+++ |. .+...|. .|..| +|+.+.|++...+.+..+.+ .+ +
T Consensus 158 e~~~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Pl------A~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~ 229 (544)
T TIGR02462 158 ESLIGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPLPL------ACHRR--TDPTYVEWHSADTVFDLQPNDDAPSERF 229 (544)
T ss_pred HHHhCCCCCcCCCcccchhHHHHHHHHhccccccccCch------hhhcc--CCCccceecCCccchhhhhhhhccCCCE
Confidence 999999985322221 123333344444 33 3323332 23332 68888888876676766663 55 9
Q ss_pred EEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC------------
Q 004496 425 VILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN------------ 492 (748)
Q Consensus 425 ~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~------------ 492 (748)
+|++++.|++|++++++ .++|++|.+.+.. .++..+++||.||||||+|+||+||++|+++.
T Consensus 230 ~l~~~a~v~~i~~d~~~----~~~v~~v~~~d~~--~g~~~~v~A~~vVLAagaIetpRLLL~S~~~~~~~p~gl~Nss~ 303 (544)
T TIGR02462 230 TLLTNHRCTRLVRNETN----ESEIEAALVRDLL--SGDRFEIKADVYVLACGAVHNPQILVNSGFGQLGRPDPTNPPPL 303 (544)
T ss_pred EEEcCCEEEEEEeCCCC----CceeEEEEEEECC--CCcEEEEECCEEEEccCchhhHHHHHhCCCCCCcCCCCcCCCCC
Confidence 99999999999887642 1289999998732 24677899999999999999999999997752
Q ss_pred -CccccccccCccceEEeecCCCccc-ccccccCCCcEeEeeccccc-Cccc--c-ceecCCCCCccc---ccccCCCcc
Q 004496 493 -PNIGTNLHLHPVLLAWGYIPDHVSE-LKGKTFEGGIITSIHKVVSE-DSKV--Q-AIIESPAMGPAS---FAASFPWIS 563 (748)
Q Consensus 493 -p~VG~nL~~Hp~~~~~~~~~~~~~~-~~~~~~~gg~~t~~~~~~~~-~~~~--~-~~~e~~~~~p~~---~~~~~p~~~ 563 (748)
+.||||||+|+...+.++++++..+ +.+..+ ....+...... ...+ + ..+......|.. +....||..
T Consensus 304 ~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~w~~ 380 (544)
T TIGR02462 304 LPSLGRYITEQSMTFCQIVLSTELVDSVRSDPR---GLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTPFTEEHPWHT 380 (544)
T ss_pred CCCCCcchhcCCCccEEEEecchhhhhccCCcc---ccccccccchhhhccccCCcccccccccCcccccccccccccch
Confidence 5799999999999888888654211 211110 00000000000 0000 0 000000000100 001113321
Q ss_pred chHHHHHHHhcCC---------ee--EEEEEeeeCCCceEEe-----------eeeEeecCChhhHHHHHHHHHHHHHHH
Q 004496 564 GRELKDRMLRYGR---------IA--QLFALVRDQGSGEVKV-----------EGKIKYRLSKNDKENLKTGLRQALRIL 621 (748)
Q Consensus 564 g~~~k~~~~~~~~---------~~--~~~~l~~d~~~G~V~~-----------~p~I~y~~~~~D~~~l~~~~~~~~~i~ 621 (748)
........|.. .. .++.-..|...++|++ .|+|+|..+++|++.+.++.+.+.+|+
T Consensus 381 --~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~ 458 (544)
T TIGR02462 381 --QIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVA 458 (544)
T ss_pred --hhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 11111111221 11 2233334556667754 367899999999999999999999999
Q ss_pred HHcCCcccccccCCCCcccccCCChHHHHHHHHhhhhhcCCCCCCCCcccccccccccCccCCCCCCCcccCCCCceeec
Q 004496 622 IAAGAEEVGTYRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEA 701 (748)
Q Consensus 622 ~~~ga~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~H~~GTcrMG~~~~~gVVD~~~rv~g~ 701 (748)
.++|+...... + .| ..+..+.|++||||||.+|++||||++|||||+
T Consensus 459 ~~~G~~~~~~~----~-------------~~----------------~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~ 505 (544)
T TIGR02462 459 AKIGGYLPGSL----P-------------QF----------------MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNF 505 (544)
T ss_pred HHcCCCccccc----c-------------cc----------------cCCCccccCCCCeecCCCCCCceECCCCcEeCC
Confidence 99998643110 0 00 112468899999999999999999999999999
Q ss_pred CCcEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 004496 702 EGLFVCDGSVLPSAIGINPMITIESTSYCISKKIADSL 739 (748)
Q Consensus 702 ~nL~VaDaSvfPt~~~~NP~lTi~AlA~~iA~~ia~~l 739 (748)
+||||+|+|+||+.+++|||+||||+|+++|++|.+.+
T Consensus 506 ~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 506 KNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred CCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998765
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=7e-41 Score=357.33 Aligned_cols=258 Identities=28% Similarity=0.400 Sum_probs=199.1
Q ss_pred eeEEEECCCchHHHHHHHHHHCC-CcEEEEcccCCCCCCCC------CCcCCCchhhhhhhCCceecCCCcEEEeccCcc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGNYFVAEDY------SSLEGPSMHELYESGGLLSTLDGKFMVFAGSAV 309 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~~~~~~~~------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~l 309 (748)
|||||||||++|+++|.+||++| .+|||||+|++...... .......+.+.|.+.+........+.+.+|+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 80 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKGL 80 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-ST
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccccccceeeeecceec
Confidence 89999999999999999999997 69999999998765441 111223445556665555666777888899999
Q ss_pred cchhhhhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhh-------------hhcCcCCCCccCchhHHHHHHHH
Q 004496 310 GGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVS-------------KRIGVTEHCTEEGFQNQVLRKGC 376 (748)
Q Consensus 310 GGgs~in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~-------------~~lgv~~~~~~~~~~~~~l~~~~ 376 (748)
||+|.+|++.++|+.+.+|++|....+.+.|.++++.++|++++ +.+.+...........+.+.+++
T Consensus 81 GGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~ 160 (296)
T PF00732_consen 81 GGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDAA 160 (296)
T ss_dssp TGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHHH
T ss_pred CCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHHH
Confidence 99999999999999999999999988888899999999999999 33444122222334568889999
Q ss_pred HHcCCCccccCCCCCCCccceeccCC--CCCCccccccccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEE
Q 004496 377 ENLGFKVESVARNTPEEHYCGSCNYG--CRTGDKKGTDVTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVT 453 (748)
Q Consensus 377 ~~lG~~~~~~p~n~~~~~~~g~~~~g--~~~g~k~~~~~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~ 453 (748)
+++|++. +.+...+..||+|..+ |+.|.|.++..+||.+|.++ |++|+++|+|++|++++++ .+|+||+
T Consensus 161 ~~~G~~~---~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~-----~~a~gV~ 232 (296)
T PF00732_consen 161 EELGIPV---PQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG-----GRATGVE 232 (296)
T ss_dssp HHTTHHB---CSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS-----TEEEEEE
T ss_pred HHcCCcc---ccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc-----cceeeee
Confidence 9999983 4455567899999888 99999999999999999988 7999999999999886432 3999999
Q ss_pred EEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC---------------CccccccccCcc
Q 004496 454 ATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPV 504 (748)
Q Consensus 454 ~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~---------------p~VG~nL~~Hp~ 504 (748)
+.+.. +......+.+|+||||||+++||+||++|||+. | ||+||||||+
T Consensus 233 ~~~~~-~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~~ 296 (296)
T PF00732_consen 233 YVDND-GGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHPV 296 (296)
T ss_dssp EEETT-TSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--EE
T ss_pred eeecC-CcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhcccC
Confidence 99832 212356677899999999999999999999953 5 9999999985
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.94 E-value=2.5e-27 Score=224.97 Aligned_cols=131 Identities=32% Similarity=0.401 Sum_probs=99.9
Q ss_pred eCCCceEEee-------ee--EeecCChhhHHHHHHHHHHHHHHHHHcCCcccccc-cCCCC---cccccCCChHHHHHH
Q 004496 586 DQGSGEVKVE-------GK--IKYRLSKNDKENLKTGLRQALRILIAAGAEEVGTY-RSDGH---RIRCKGIKEEDLEEF 652 (748)
Q Consensus 586 d~~~G~V~~~-------p~--I~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~~-~~~~~---~~~~~~~~d~~~~~~ 652 (748)
|+|+|+|+++ |. ++|..+++|++.+.++++.+.+|+... ++++... ..++. .......+++++++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 5788888753 44 479999999999999999999999988 5554211 11111 112234578889999
Q ss_pred HHhhhhhcCCCCCCCCcccccccccccCccCCCCCCCcccCCCCceeecCCcEEecCCCCCCCCCCCchhhHHHHHHHH
Q 004496 653 IGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCI 731 (748)
Q Consensus 653 ~~~~~~~~g~~~~~~~~~~~~~~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~VaDaSvfPt~~~~NP~lTi~AlA~~i 731 (748)
+++.. .+++|++||||||.++++||||++|||||++||||+||||||+++++||++|+||+|+|+
T Consensus 80 ~~~~~--------------~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNV--------------GTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHG--------------EECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeecc--------------ceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 98753 589999999999999999999999999999999999999999999999999999998764
No 9
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.47 E-value=3.2e-13 Score=151.39 Aligned_cols=67 Identities=25% Similarity=0.196 Sum_probs=50.2
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHh
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMIS 487 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~ 487 (748)
....+...+.+.|++|+.+++|++|+.+++ +|+||.+.+. ..++.++|+|+.||||+|++.. .++.+
T Consensus 143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g-------~V~Gv~~~~~--~~g~~~~i~A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 143 LIEALAKAAEEAGVDIRFNTRVTDLITEDG-------RVTGVVAENP--ADGEFVRIKAKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETT-------EEEEEEEEET--TTCEEEEEEESEEEE----BGG-HHHHH
T ss_pred HHHHHHHHHhhcCeeeeccceeeeEEEeCC-------ceeEEEEEEC--CCCeEEEEeeeEEEeccCcccc-ccccc
Confidence 444556667788999999999999999765 9999999852 2457789999999999999987 55544
No 10
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.46 E-value=5e-13 Score=151.95 Aligned_cols=68 Identities=19% Similarity=0.139 Sum_probs=52.5
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhc
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISS 488 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~S 488 (748)
....+...+.+.|++|+++++|++|+.+++ +|+||.+.. ..++...++||.||+|+|++.++..|++.
T Consensus 133 l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g-------~v~gv~~~~---~~g~~~~i~a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 133 LVNALYRSAERLGVEIRYDAPVTALELDDG-------RFVGARAGS---AAGGAERIRAKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCC-------eEEEEEEEc---cCCceEEEECCEEEECCCCCCCCHHHHHh
Confidence 344556667778999999999999987543 899998853 12345678999999999999887776665
No 11
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.45 E-value=1.2e-12 Score=149.91 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=49.2
Q ss_pred cccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCH-HHHHh
Q 004496 412 DVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTP-PLMIS 487 (748)
Q Consensus 412 ~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp-~LLl~ 487 (748)
...++..+.+.|++|+++++|++|+.+++ +|+||.+.. ..++..+|+||.||+|+|++..+ .++.+
T Consensus 193 ~~~L~~~~~~~gv~i~~~t~v~~l~~~~g-------~V~Gv~~~~---~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 193 VDGLLKNVQERKIPLFVNADVTKITEKDG-------KVTGVKVKI---NGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHHHHHHHcCCeEEeCCeeEEEEecCC-------EEEEEEEEe---CCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 34455566778999999999999875443 899998865 12345679999999999998754 44444
No 12
>PRK07121 hypothetical protein; Validated
Probab=99.44 E-value=1.3e-12 Score=149.35 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=49.8
Q ss_pred cccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCCCCHHHHHh
Q 004496 412 DVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMIS 487 (748)
Q Consensus 412 ~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai~Sp~LLl~ 487 (748)
...+...+.+.|++|+++++|++|+.++++ +|+||++.. .++...|+| |.||||+|++....-|++
T Consensus 180 ~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g------~v~Gv~~~~----~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 180 MDPLAKRAAALGVQIRYDTRATRLIVDDDG------RVVGVEARR----YGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEECCCC------CEEEEEEEe----CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 344555666778999999999999876432 899999864 234568999 999999999876544444
No 13
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.41 E-value=3.8e-12 Score=146.80 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=47.1
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCCCCHHHH
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLM 485 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai~Sp~LL 485 (748)
..++..+.+.|++|+++++|++|+.+++ +|+||.+.. .++.+.|.| |.||||+|++....-|
T Consensus 221 ~~L~~~~~~~Gv~i~~~t~v~~Li~~~g-------~V~GV~~~~----~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 221 AGLFAGVLRAGIPIWTETSLVRLTDDGG-------RVTGAVVDH----RGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHHHHCCCEEEecCEeeEEEecCC-------EEEEEEEEE----CCcEEEEEcCCEEEEecCCccccHHH
Confidence 3455556778999999999999986533 999998764 234567777 7899999999865433
No 14
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.39 E-value=4.8e-12 Score=145.99 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=59.9
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
....++..|.+.|++|+++++|+.|..+++ +++||++.+.. +++..+|+|+.||+|||+ ++..|+...|+
T Consensus 151 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-------~v~gv~v~d~~--~g~~~~i~A~~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 151 LTAANMLDAKEHGAQILTYHEVTGLIREGD-------TVCGVRVRDHL--TGETQEIHAPVVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEEcCC-------eEEEEEEEEcC--CCcEEEEECCEEEECCCh-hHHHHHHhcCC
Confidence 344566678889999999999999876654 89999987521 234468999999999997 68889887776
Q ss_pred CCC---cccccccc
Q 004496 491 ENP---NIGTNLHL 501 (748)
Q Consensus 491 ~~p---~VG~nL~~ 501 (748)
..| .-|.+|..
T Consensus 221 ~~~i~p~kG~~lv~ 234 (546)
T PRK11101 221 RIRMFPAKGSLLIM 234 (546)
T ss_pred CCceeecceEEEEE
Confidence 533 33555543
No 15
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.39 E-value=2.8e-12 Score=139.81 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=52.4
Q ss_pred cccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcC
Q 004496 410 GTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSG 489 (748)
Q Consensus 410 ~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SG 489 (748)
.....++..+.+.|++|+++++|++|..+++ +++||++.+ + .++||.||+|+|+ +++.|+..+|
T Consensus 148 ~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-------~v~gv~~~~---g-----~i~ad~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 148 RLIQALAAEAQRAGVEIRTGTEVTSIDVDGG-------RVTGVRTSD---G-----EIRADRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHHHHHHHHHTT-EEEESEEEEEEEEETT-------EEEEEEETT---E-----EEEECEEEE--GG-GHHHHHHTTT
T ss_pred chhhhhHHHHHHhhhhccccccccchhhccc-------ccccccccc---c-----ccccceeEecccc-cceeeeeccc
Confidence 3455667777889999999999999988776 888898754 2 5999999999996 7899999988
Q ss_pred CCC
Q 004496 490 LEN 492 (748)
Q Consensus 490 i~~ 492 (748)
+..
T Consensus 212 ~~~ 214 (358)
T PF01266_consen 212 LDL 214 (358)
T ss_dssp TSS
T ss_pred ccc
Confidence 764
No 16
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.38 E-value=5.4e-12 Score=146.36 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=45.8
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEcc-EEEEcCCCCCCH-HHHHh
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAK-ATISACGSLLTP-PLMIS 487 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak-~VVlAaGai~Sp-~LLl~ 487 (748)
.+.+.|++|+++++|++|+.++++ +|+||.+.. .++.+.|+|+ .||||||++... .++.+
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g------~V~Gv~~~~----~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDG------AVVGAVVER----EGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCC------cEEEEEEEe----CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 344567999999999999886542 899999864 2356789996 699999999864 44443
No 17
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.38 E-value=6e-12 Score=144.29 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=48.1
Q ss_pred ccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEcc-EEEEcCCCCCCH-HHHHhc
Q 004496 413 VTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAK-ATISACGSLLTP-PLMISS 488 (748)
Q Consensus 413 ~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak-~VVlAaGai~Sp-~LLl~S 488 (748)
..++..+.+. |++|+++++|++|+.+++ +|+||.+.. .++...|+|+ .||||||++... .++.+-
T Consensus 177 ~~l~~~~~~~~gv~i~~~t~~~~Li~~~g-------~v~Gv~~~~----~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~ 244 (513)
T PRK12837 177 GRFLAALARFPNARLRLNTPLVELVVEDG-------RVVGAVVER----GGERRRVRARRGVLLAAGGFEQNDDMRARY 244 (513)
T ss_pred HHHHHHHHhCCCCEEEeCCEEEEEEecCC-------EEEEEEEEE----CCcEEEEEeCceEEEeCCCccCCHHHHHHh
Confidence 3445555554 899999999999987643 999999864 2356789994 899999999654 444443
No 18
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.36 E-value=1.1e-11 Score=143.40 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=48.9
Q ss_pred cchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCCCCHHHHHh
Q 004496 414 TWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMIS 487 (748)
Q Consensus 414 ~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai~Sp~LLl~ 487 (748)
.+...+.+.|++|+++++|++|+.+++ +|+||++.. .++.+.|+| |.||||+|++..+.-|+.
T Consensus 213 ~l~~~~~~~gv~i~~~~~v~~Li~~~g-------~v~Gv~~~~----~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 213 RMLEAALAAGVPLWTNTPLTELIVEDG-------RVVGVVVVR----DGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCC-------EEEEEEEEE----CCeEEEEEecceEEEecCCccCCHHHHH
Confidence 344556678999999999999987754 999999864 235678899 589999999987544443
No 19
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.36 E-value=7.6e-12 Score=144.85 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=46.8
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
..+...+.+.|++|++++.|++|+.+++ +|+||.+.+.. .++...|+||.||||+|++.
T Consensus 140 ~~L~~~~~~~gv~i~~~~~~~~Li~~~g-------~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 140 HTLFERTSGLNVDFYNEWFSLDLVTDNK-------KVVGIVAMQMK--TLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHhCCCEEEeCcEEEEEEEECC-------EEEEEEEEECC--CCeEEEEEeCeEEECCCccc
Confidence 3455556667899999999999988654 99999987622 23566899999999999986
No 20
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.34 E-value=2.2e-11 Score=140.93 Aligned_cols=36 Identities=50% Similarity=0.786 Sum_probs=34.2
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+.++||||||+|.+|+++|..++++|.+|+||||+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467999999999999999999999999999999997
No 21
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.34 E-value=1e-11 Score=154.37 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=45.5
Q ss_pred CCCEEEcCcEEEEEEEecCC--CCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHH
Q 004496 422 NGAVILAGFKAEKFILVDNK--DSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPP 483 (748)
Q Consensus 422 ~G~~i~~~~~V~~I~~~~~~--~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~ 483 (748)
.|++|+++++|++|+.++++ +|....+|+||.+.+..+.+++...|+||.||||+|++....
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCc
Confidence 48999999999999886421 111123899999986200134667899999999999998754
No 22
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=1.3e-11 Score=143.43 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=47.0
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
..++..+.+.|++|++++.|++|+.++++ +|+||.+.+.. .++...|.||.||||+|++..
T Consensus 147 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g------~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 147 HTLYQQNLKNHTTIFSEWYALDLVKNQDG------AVVGCTAICIE--TGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHhhhcCCEEEeCcEEEEEEECCCC------EEEEEEEEEcC--CCcEEEEEcCeEEECCCCccc
Confidence 34455566678999999999999875432 99999986422 345678999999999999864
No 23
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.32 E-value=1.6e-11 Score=143.24 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=48.4
Q ss_pred cccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 412 DVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 412 ~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
..++...+.+.|++|++++.|++|+.++++ +|+||.+.+.. +++...|.||.||||+|++..
T Consensus 190 ~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g------~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 190 LHTLYGQAMKHNTQFFVEYFALDLIMDSDG------ACQGVIALNME--DGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHhCCCEEEEeeEEEEEEEcCCC------EEEEEEEEEcC--CCeEEEEEcCeEEECCCCCcc
Confidence 345555677789999999999999876432 99999986522 346678999999999999864
No 24
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.32 E-value=2.6e-11 Score=139.79 Aligned_cols=38 Identities=42% Similarity=0.581 Sum_probs=35.6
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
++.++||||||+|++|+.+|..++++|.+|+||||+..
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 56789999999999999999999999999999999974
No 25
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.32 E-value=1.4e-11 Score=143.73 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=47.2
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
..+...+.+.|++|++++.|++|+.++++ +|+||.+.+. .+++...|.||.||||+|++..
T Consensus 170 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g------~v~Gv~~~~~--~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 170 HTLYGQSLKYDCNFFIEYFALDLIMDEDG------ECRGVIAMSM--EDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHhCCCEEEeceEEEEEEECCCC------EEEEEEEEEC--CCCeEEEEECCcEEEeCCCCcc
Confidence 44555566789999999999999874332 9999988652 2346678999999999999864
No 26
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.32 E-value=1.8e-11 Score=138.13 Aligned_cols=68 Identities=22% Similarity=0.148 Sum_probs=50.3
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHh
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMIS 487 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~ 487 (748)
....+...+.+.|++|+++++|++|+.++++ +++||++.. ..++...+.+|.||+|+|++....-|++
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g------~v~Gv~~~~---~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQG------TVVGVVVKG---KGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCC------cEEEEEEEe---CCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 3345566677789999999999999876442 899999875 2234556789999999999876444433
No 27
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=1.5e-11 Score=143.98 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=44.1
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
.+.+.|++|++++.|++|+.+++ +|+||.+.+.. +++...|.||.||||+|++..
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g-------~V~GV~~~~~~--~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG-------RARGIVARNLV--TGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC-------EEEEEEEEECC--CCcEEEEECCEEEECCCCccc
Confidence 34567899999999999987654 99999987521 235568999999999999864
No 28
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=2.4e-11 Score=141.54 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=47.5
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
..++..+.+.|++|++++.|++|+.++++ +|+||.+.+.. .++...|.||.||||+|++..
T Consensus 153 ~~L~~~~~~~gi~i~~~~~v~~Li~~~~g------~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 153 HTLYQQSLKHNAEFFIEYFALDLIMDDGG------VCRGVVAWNLD--DGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHhhcCCEEEEeEEEEEEEEcCCC------EEEEEEEEECC--CCcEEEEEcCEEEECCCCCcc
Confidence 34555566778999999999999886532 89999986422 345678999999999999864
No 29
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.30 E-value=1.9e-11 Score=137.03 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=43.5
Q ss_pred ccchHHHHh-CCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 413 VTWLVDAVD-NGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 413 ~~~L~~A~~-~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
..++..+.+ .|++|++++.|++|+.+++ +|+||.+.. .+....|.||.||||+|++..
T Consensus 132 ~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-------~v~Gv~~~~----~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 132 KILLKKVKKRKNITIIENCYLVDIIENDN-------TCIGAICLK----DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHhcCCCEEEECcEeeeeEecCC-------EEEEEEEEE----CCcEEEEEcCeEEEccCcccc
Confidence 344545554 4899999999999876544 899988654 123457899999999999753
No 30
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28 E-value=3.7e-11 Score=127.17 Aligned_cols=168 Identities=18% Similarity=0.264 Sum_probs=105.7
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCcCCCchhhhhhhCCceecCCCcEEEeccCcccchhh
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAEDYSSLEGPSMHELYESGGLLSTLDGKFMVFAGSAVGGGSA 314 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lGGgs~ 314 (748)
..+||||||+|++|+.+|..++++|++|+|||+++.+... +. +-|++-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrK--------------------------il------~sGgGr 49 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRK--------------------------IL------MSGGGR 49 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccce--------------------------eE------ecCCCC
Confidence 4699999999999999999999999999999999743211 11 112233
Q ss_pred hhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCCCccCchhHHHHHHHHHHcCCCccccCCCCCCCc
Q 004496 315 VNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLRKGCENLGFKVESVARNTPEEH 394 (748)
Q Consensus 315 in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~n~~~~~ 394 (748)
.|..- ...++++...+ |. ....+...+ ..|.++.++++++.+|++...- .+
T Consensus 50 CN~Tn-----~~~~~~~ls~~--p~-~~~fl~sal---------------~~ft~~d~i~~~e~~Gi~~~e~------~~ 100 (408)
T COG2081 50 CNFTN-----SEAPDEFLSRN--PG-NGHFLKSAL---------------ARFTPEDFIDWVEGLGIALKEE------DL 100 (408)
T ss_pred ccccc-----cccHHHHHHhC--CC-cchHHHHHH---------------HhCCHHHHHHHHHhcCCeeEEc------cC
Confidence 34331 11122322221 10 000011111 1245678899999999987642 12
Q ss_pred cceeccCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEE
Q 004496 395 YCGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATIS 474 (748)
Q Consensus 395 ~~g~~~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVl 474 (748)
+.-+| ....-.....+|+.++.+.|++|+++++|.+|..++. .-.|.+.+ + . +|+|+.+||
T Consensus 101 Gr~Fp----~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~---g--~--~i~~d~lil 161 (408)
T COG2081 101 GRMFP----DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSS---G--E--TVKCDSLIL 161 (408)
T ss_pred ceecC----CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCC---C--C--EEEccEEEE
Confidence 22222 2222344667889899999999999999999865542 12233321 2 2 799999999
Q ss_pred cCCCCCCH
Q 004496 475 ACGSLLTP 482 (748)
Q Consensus 475 AaGai~Sp 482 (748)
|+|+..-|
T Consensus 162 AtGG~S~P 169 (408)
T COG2081 162 ATGGKSWP 169 (408)
T ss_pred ecCCcCCC
Confidence 99987666
No 31
>PLN02815 L-aspartate oxidase
Probab=99.27 E-value=4.1e-11 Score=138.63 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=45.4
Q ss_pred ccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 413 VTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
..++..+.+. |++|++++.|++|+.++++ +..+|+||.+.+. .+++...|.||.||||+|++.
T Consensus 159 ~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g---~~~~v~Gv~~~~~--~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 159 RALLEAVKNDPNITFFEHHFAIDLLTSQDG---GSIVCHGADVLDT--RTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHhcCCCEEEeceEhheeeeecCC---CccEEEEEEEEEc--CCCeEEEEEeceEEEcCCcce
Confidence 3444445454 7999999999999876431 0114999998652 234567889999999999985
No 32
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=4.9e-11 Score=137.81 Aligned_cols=61 Identities=26% Similarity=0.250 Sum_probs=46.0
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
..+...+.+.|++|++++.|++|+.+++ ++|+||.+.+.. .++...|+||.||+|+|++..
T Consensus 138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~------~~v~Gv~~~~~~--~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 138 MGLMEYLIKERIKILEEVMAIKLIVDEN------REVIGAIFLDLR--NGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeeEEeCC------cEEEEEEEEECC--CCcEEEEEcCcEEECCCCCCC
Confidence 3344445567899999999999987754 269999876521 235568999999999999863
No 33
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=4.7e-11 Score=138.76 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=46.8
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
....++..+.+.|++|++++.|++|+.+++ +|.||.+.+.. .++...|.||.||||+|++..
T Consensus 137 i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g-------~v~Gv~~~~~~--~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 137 ILHELVNNLRRYGVTIYDEWYVMRLILEDN-------QAKGVVMYHIA--DGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHHHHHhhCCCEEEeCcEEEEEEEECC-------EEEEEEEEEcC--CCeEEEEECCEEEECCCCCcC
Confidence 334455556677899999999999987654 89999875422 234567899999999999853
No 34
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=7.3e-11 Score=137.32 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=47.4
Q ss_pred cccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 412 DVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 412 ~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
...++..+.+.|++|+.++.|++|+.++++ +|+||.+.+. ..++...+.||.||||+|++..
T Consensus 151 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g------~v~Gv~~~~~--~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 151 LHTLYQQNVAAKTQFFVEWMALDLIRDADG------DVLGVTALEM--ETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHHHhcCCEEEeCcEEEEEEEcCCC------eEEEEEEEEc--CCCeEEEEECCeEEECCCCccc
Confidence 344555566779999999999999876432 8999998652 2345668899999999999863
No 35
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.24 E-value=7.9e-11 Score=138.16 Aligned_cols=59 Identities=22% Similarity=0.184 Sum_probs=46.6
Q ss_pred cchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 414 TWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 414 ~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
++...+.+.|++|+.++.|++|+.+++ +|.||.+.+.. +++...|.||.||||+|++..
T Consensus 163 ~L~~~~~~~gv~i~~~~~~~~Li~~~g-------~v~Gv~~~~~~--~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 163 AVDNEAIKLGVPVHDRKEAIALIHDGK-------RCYGAVVRCLI--TGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHhCCCEEEeeEEEEEEEEECC-------EEEEEEEEEcC--CCcEEEEEcCeEEECCCcccC
Confidence 344556677999999999999987654 99999987522 345678899999999999863
No 36
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=6.3e-11 Score=138.60 Aligned_cols=35 Identities=37% Similarity=0.396 Sum_probs=33.6
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|||||||||++|+++|..++++|.+|+||||+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 57999999999999999999999999999999986
No 37
>PRK12839 hypothetical protein; Provisional
Probab=99.24 E-value=1.1e-10 Score=135.22 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=47.3
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHH
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMI 486 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl 486 (748)
..++..+.+.|++|++++.|++|+.++++ +|+||.+.. ..++...+.+|.||||+|++....-|+
T Consensus 218 ~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g------~V~GV~~~~---~~g~~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 218 GRLLRSADDLGVDLRVSTSATSLTTDKNG------RVTGVRVQG---PDGAVTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEECCCC------cEEEEEEEe---CCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence 34566677889999999999999876432 899999865 122333334599999999998744443
No 38
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.23 E-value=1.3e-10 Score=134.50 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=46.7
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEcc-EEEEcCCCCCCHHHHHhc
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAK-ATISACGSLLTPPLMISS 488 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak-~VVlAaGai~Sp~LLl~S 488 (748)
.+.+.|++|+++++|++|+.+++ +|+||.+.. .++...|+|+ .||||+|++.+..-|+..
T Consensus 217 ~~~~~gv~v~~~t~v~~l~~~~g-------~v~Gv~~~~----~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 217 GLQRAGVPVLLNTPLTDLYVEDG-------RVTGVHAAE----SGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHcCCCEEEeCCEEEEEEEeCC-------EEEEEEEEe----CCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 34456899999999999987644 899999864 2356789995 799999999876655553
No 39
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=126.80 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=51.7
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
...+++..+.++|++|..|++|++|..+++ .++-+.+. ++ +.. ++||.||+|||. .+-+|++++|+
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-------g~~~~~~~---~g--~~~-~~ak~Vin~AGl-~Ad~la~~~g~ 220 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSD-------GVFVLNTS---NG--EET-LEAKFVINAAGL-YADPLAQMAGI 220 (429)
T ss_pred HHHHHHHHHHHcCCEEEecCeeeEEEEeCC-------ceEEEEec---CC--cEE-EEeeEEEECCch-hHHHHHHHhCC
Confidence 456677888889999999999999977655 12223222 23 333 999999999996 69999999998
Q ss_pred CC
Q 004496 491 EN 492 (748)
Q Consensus 491 ~~ 492 (748)
..
T Consensus 221 ~~ 222 (429)
T COG0579 221 PE 222 (429)
T ss_pred Cc
Confidence 75
No 40
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.23 E-value=5.2e-11 Score=137.23 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred ccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 413 VTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
..+...+.+. |++|++++.|++|+.++++ ++|+||.+.. .++...|.||.||||+|++.
T Consensus 138 ~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~-----g~v~Gv~~~~----~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 138 TTLTEQVLQRPNIEIISQALALSLWLEPET-----GRCQGISLLY----QGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHhhcCCcEEEECcChhhheecCCC-----CEEEEEEEEE----CCeEEEEEcCEEEEcCCCCc
Confidence 3444444444 7999999999999876421 1899998864 23456789999999999975
No 41
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.22 E-value=1.5e-10 Score=134.63 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=49.7
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCCCCHHHHHh
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMIS 487 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai~Sp~LLl~ 487 (748)
..+...+.+.|++|+++++|++|+.+++ +|+||.+.. .+....|+| |.||||+|++....-|+.
T Consensus 221 ~~L~~~a~~~Gv~i~~~t~v~~l~~~~g-------~v~GV~~~~----~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 285 (581)
T PRK06134 221 ARLLKSAEDLGVRIWESAPARELLREDG-------RVAGAVVET----PGGLQEIRARKGVVLAAGGFPHDPARRA 285 (581)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCC-------EEEEEEEEE----CCcEEEEEeCCEEEEcCCCcccCHHHHH
Confidence 4556667788999999999999987643 899998865 123457899 999999999976555543
No 42
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.22 E-value=1.3e-10 Score=135.26 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=47.4
Q ss_pred cchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCCCCHHHHHh
Q 004496 414 TWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMIS 487 (748)
Q Consensus 414 ~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai~Sp~LLl~ 487 (748)
.+...+.+.|++|++++.|++|+.+++ +|+||.+.+ .. ....+.| |.||||+|++....-|+.
T Consensus 219 ~L~~~~~~~Gv~i~~~~~v~~l~~~~g-------~V~GV~~~~---~~-~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 219 RLAKSALDLGIPILTGTPARELLTEGG-------RVVGARVID---AG-GERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEeeCC-------EEEEEEEEc---CC-ceEEEEeCCEEEEcCCCccchHHHHH
Confidence 345556678999999999999987654 999999875 11 2356788 589999999975555544
No 43
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.22 E-value=8.7e-11 Score=113.94 Aligned_cols=60 Identities=30% Similarity=0.388 Sum_probs=46.7
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEecc----CCceeEEEEEccEEEEcCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALN----KNVTRKLQIKAKATISACGS 478 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~----~g~~~~~~i~Ak~VVlAaGa 478 (748)
.+++..|.+.|++|+..+.|++|++.++ +||+||.+.++. .---...+|+||.||=|+|-
T Consensus 113 skl~~~a~~aGaki~n~~~veDvi~r~~------~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 113 SKLAARALDAGAKIFNGVSVEDVIVRDD------PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHhcCceeeecceEEEEEEecC------CceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 3456778889999999999999999876 289999998741 00112458999999999994
No 44
>PRK08275 putative oxidoreductase; Provisional
Probab=99.22 E-value=1e-10 Score=135.35 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=45.4
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
..+...+.+.|++|++++.|++|+.++++ +++||.+.+.. .++...+.||.||||+|++.
T Consensus 141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g------~v~Gv~~~~~~--~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 141 KVLYRQLKRARVLITNRIMATRLLTDADG------RVAGALGFDCR--TGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHCCCEEEcceEEEEEEEcCCC------eEEEEEEEecC--CCcEEEEECCEEEECCCCcc
Confidence 34445566678999999999999876331 89999876522 23456789999999999974
No 45
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.21 E-value=8.3e-11 Score=131.80 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=48.3
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
....++..+.+.|++|+++++|++|..+++ ++++|.+.. .+++|+.||+|+|+ ++..|+...|+
T Consensus 203 ~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-------~~~~v~t~~--------~~~~a~~VV~a~G~-~~~~l~~~~g~ 266 (416)
T PRK00711 203 FTQRLAAMAEQLGVKFRFNTPVDGLLVEGG-------RITGVQTGG--------GVITADAYVVALGS-YSTALLKPLGV 266 (416)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCC-------EEEEEEeCC--------cEEeCCEEEECCCc-chHHHHHHhCC
Confidence 344566667788999999999999866544 666665432 26889999999997 57777766555
Q ss_pred CC
Q 004496 491 EN 492 (748)
Q Consensus 491 ~~ 492 (748)
..
T Consensus 267 ~~ 268 (416)
T PRK00711 267 DI 268 (416)
T ss_pred Cc
Confidence 43
No 46
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.2e-10 Score=135.35 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=40.1
Q ss_pred CEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 424 AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 424 ~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
++|++++.|++|+.++++ +|+||.+.+.. .++...|.||.||||+|++..
T Consensus 152 i~i~~~~~~~~Li~~~~g------~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 152 VTKYEGWEFLGAVLDDEG------VCRGIVAQDLF--TMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred cEEEeeEEEEEEEECCCC------EEEEEEEEECC--CCcEEEEECCEEEECCCCCcC
Confidence 889999999999876432 99999997621 235567899999999999864
No 47
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.21 E-value=1.4e-10 Score=134.89 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=46.2
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
..++..+.+.|++|++++.|++|+.+++ +|+||.+.+.. .++...|.||.||+|+|++.
T Consensus 133 ~~L~~~~~~~gv~i~~~~~v~~L~~~~g-------~v~Gv~~~~~~--~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 133 HTLYEQCLKLGVSFFNEYFALDLIHDDG-------RVRGVVAYDLK--TGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHcCCEEEeccEEEEEEEeCC-------EEEEEEEEECC--CCcEEEEECCeEEECCCccc
Confidence 3455556677999999999999987654 99999886522 23456899999999999975
No 48
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.21 E-value=3.1e-10 Score=132.42 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=43.7
Q ss_pred cchHHHHhCC-CEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 414 TWLVDAVDNG-AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 414 ~~L~~A~~~G-~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
.+...+.+.| ++|++++.|++|+.+++ +|+||.+.+.. .++...+.||.||+|+|++.
T Consensus 137 ~L~~~a~~~ggV~i~~~~~v~~Li~~~g-------~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 137 IVAEAAKKALGDNVLNRVFITDLLVDDN-------RIAGAVGFSVR--ENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHhcCCCEEEeCCEEEEEEEeCC-------EEEEEEEEEcc--CCcEEEEECCEEEECCCchh
Confidence 3344555666 99999999999987654 89999875422 23456889999999999974
No 49
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.5e-10 Score=134.75 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=45.8
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
..+...+.+.|++|++++.|++|+.+++++ ..+|+||.+.+.. .++...|.||.||||+|++.
T Consensus 144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~---~g~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPS---GPVAAGVVAYELA--TGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEecCCcc---CCcEEEEEEEEcC--CCeEEEEEeCeEEECCCCCc
Confidence 344555667789999999999998765200 0189999885422 23556789999999999985
No 50
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.20 E-value=2e-10 Score=128.50 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=32.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
+||||||||+.|+++|++|+++|++|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999974
No 51
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.20 E-value=4.6e-11 Score=131.81 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=86.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCcCCCchhhhhhhCCceecCCCcEEEeccCcccchhhhh
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAEDYSSLEGPSMHELYESGGLLSTLDGKFMVFAGSAVGGGSAVN 316 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lGGgs~in 316 (748)
|||||||+|++|+.+|..|++.|++|+||||+..... .+. +-|+...|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk------------Kil--------------------~tG~GrCN 48 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK------------KIL--------------------ITGNGRCN 48 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H------------HHH--------------------HCGGGT-E
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc------------cee--------------------ecCCCCcc
Confidence 8999999999999999999999999999999974211 111 11222233
Q ss_pred ccccccCChhHHhhhhhhcC-CCCCCchhhHHHHHHhhhhcCcCCCCccCchhHHHHHHHHHHcCCCccccCCCCCCCcc
Q 004496 317 WSACIETPDSVLRDWFVEHK-IPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLRKGCENLGFKVESVARNTPEEHY 395 (748)
Q Consensus 317 ~~~~~r~~~~~~~~W~~~~g-~~~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~n~~~~~~ 395 (748)
..-. .... .++...++ -+.| +...+. .+..+.+.+.++++|++....+ +
T Consensus 49 ~tn~-~~~~---~~~~~~~~~~~~f----~~~~l~---------------~f~~~d~~~ff~~~Gv~~~~~~-~------ 98 (409)
T PF03486_consen 49 LTNL-NIDP---SEFLSGYGRNPKF----LKSALK---------------RFSPEDLIAFFEELGVPTKIEE-D------ 98 (409)
T ss_dssp EEET-TSSG---GGEECS-TBTTTC----THHHHH---------------HS-HHHHHHHHHHTT--EEE-S-T------
T ss_pred cccc-ccch---hhHhhhcccchHH----HHHHHh---------------cCCHHHHHHHHHhcCCeEEEcC-C------
Confidence 2210 1111 11111110 0111 111111 1234667788899999875321 1
Q ss_pred ceeccCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEc
Q 004496 396 CGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISA 475 (748)
Q Consensus 396 ~g~~~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlA 475 (748)
+.... ......+....++..+.+.|++|+++++|++|..+++ .+..|++.+ ...+.||.||||
T Consensus 99 -gr~fP--~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-------~~f~v~~~~-------~~~~~a~~vILA 161 (409)
T PF03486_consen 99 -GRVFP--KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-------GVFGVKTKN-------GGEYEADAVILA 161 (409)
T ss_dssp -TEEEE--TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-------EEEEEEETT-------TEEEEESEEEE-
T ss_pred -CEECC--CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-------ceeEeeccC-------cccccCCEEEEe
Confidence 11110 1112234556677778888999999999999987765 667777721 138999999999
Q ss_pred CCCCCCHH
Q 004496 476 CGSLLTPP 483 (748)
Q Consensus 476 aGai~Sp~ 483 (748)
+|+...|.
T Consensus 162 tGG~S~p~ 169 (409)
T PF03486_consen 162 TGGKSYPK 169 (409)
T ss_dssp ---SSSGG
T ss_pred cCCCCccc
Confidence 99976664
No 52
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.20 E-value=9.4e-11 Score=134.19 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=42.9
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
.+.+.|++|++++.|++|+.+++ ++.||.+.+ ..++...++||.||||+|++..
T Consensus 138 ~~~~~gV~i~~~~~v~~Li~~~g-------~v~Gv~~~~---~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 138 QELVPHVTVVEQEMVIDLIIENG-------RCIGVLTKD---SEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHhcCCEEEECeEhhheeecCC-------EEEEEEEEE---CCCcEEEEEcCeEEEecCCCcc
Confidence 33446899999999999976644 899999876 2345568899999999999864
No 53
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.19 E-value=1.5e-10 Score=113.36 Aligned_cols=144 Identities=28% Similarity=0.326 Sum_probs=83.8
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCcCCCchhhhhhhCCceecCCCcEEEeccCcccchhh
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAEDYSSLEGPSMHELYESGGLLSTLDGKFMVFAGSAVGGGSA 314 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lGGgs~ 314 (748)
.++||+|||+|++|+++|++||++|+||+|+|+...+ .|..++|+-.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~---------------------------------GGg~~~Gg~l 62 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSP---------------------------------GGGMWGGGML 62 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS----------------------------------BTTTTS-CTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCC---------------------------------Cccccccccc
Confidence 4799999999999999999999999999999998531 1122233222
Q ss_pred hhccccccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCCCccCchhHHHHHHHHHHcCCCccccCCCCCCCc
Q 004496 315 VNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLRKGCENLGFKVESVARNTPEEH 394 (748)
Q Consensus 315 in~~~~~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~n~~~~~ 394 (748)
.|-.. ++. . .. ..++++|+++....
T Consensus 63 f~~iV-Vq~-------------------------------------------~-a~---~iL~elgi~y~~~~------- 87 (230)
T PF01946_consen 63 FNKIV-VQE-------------------------------------------E-AD---EILDELGIPYEEYG------- 87 (230)
T ss_dssp ---EE-EET-------------------------------------------T-TH---HHHHHHT---EE-S-------
T ss_pred cchhh-hhh-------------------------------------------h-HH---HHHHhCCceeEEeC-------
Confidence 21110 000 0 01 12345566655321
Q ss_pred cceeccCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEecc---CC-ceeEEEEEcc
Q 004496 395 YCGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALN---KN-VTRKLQIKAK 470 (748)
Q Consensus 395 ~~g~~~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~---~g-~~~~~~i~Ak 470 (748)
-|++.. + ......+++..|.+.|++|+..+.|+++++.++. |+.||.+.++. .+ .-...+|+||
T Consensus 88 -~g~~v~---d--~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~------rV~GvViNWt~V~~~glHvDPl~i~ak 155 (230)
T PF01946_consen 88 -DGYYVA---D--SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDD------RVAGVVINWTPVEMAGLHVDPLTIRAK 155 (230)
T ss_dssp -SEEEES------HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSC------EEEEEEEEEHHHHTT--T-B-EEEEES
T ss_pred -CeEEEE---c--HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCC------eEEEEEEEehHHhHhhcCCCcceEEEe
Confidence 122210 0 1123345677788899999999999999998742 99999998841 10 1234699999
Q ss_pred EEEEcCCC
Q 004496 471 ATISACGS 478 (748)
Q Consensus 471 ~VVlAaGa 478 (748)
.||=|+|-
T Consensus 156 ~ViDaTGH 163 (230)
T PF01946_consen 156 VVIDATGH 163 (230)
T ss_dssp EEEE---S
T ss_pred EEEeCCCC
Confidence 99999994
No 54
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.19 E-value=1.9e-10 Score=128.52 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=48.7
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN 492 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~ 492 (748)
..++..+.+.|++++.+++|++|..++++ ++.+|.+.+ + ++.|+.||+|||++ ++.++...|+..
T Consensus 187 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~------~~~~v~t~~---g-----~i~a~~vVvaagg~-~~~l~~~~g~~~ 251 (407)
T TIGR01373 187 WGYARGADRRGVDIIQNCEVTGFIRRDGG------RVIGVETTR---G-----FIGAKKVGVAVAGH-SSVVAAMAGFRL 251 (407)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCC------cEEEEEeCC---c-----eEECCEEEECCChh-hHHHHHHcCCCC
Confidence 44566777889999999999998654331 667776542 2 68999999999984 677777666654
Q ss_pred C
Q 004496 493 P 493 (748)
Q Consensus 493 p 493 (748)
|
T Consensus 252 ~ 252 (407)
T TIGR01373 252 P 252 (407)
T ss_pred C
Confidence 3
No 55
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.19 E-value=1.9e-10 Score=133.63 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=43.9
Q ss_pred cchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 414 TWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 414 ~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
+++..+.+. ++++++++.|++|+.+++ +|+||.+.+.. .++...|.||.||+|+|++.
T Consensus 138 ~L~~~~~~~~~i~i~~~~~v~~Li~~~g-------~v~Gv~~~~~~--~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 138 TLFQTSLKYPQIQRFDEHFVLDILVDDG-------HVRGLVAMNMM--EGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHhhcCCCcEEEeCeEEEEEEEeCC-------EEEEEEEEEcC--CCcEEEEECCEEEECCCCCc
Confidence 334444454 699999999999987654 89999886422 23467899999999999975
No 56
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.18 E-value=3.3e-10 Score=131.74 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=49.1
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCCCCHHHHHh
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMIS 487 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai~Sp~LLl~ 487 (748)
..++..+.+.|++|++++.|++|+.+++ +|+||.+.. .++.+.|.| |.||||+|++....-|++
T Consensus 225 ~aL~~~~~~~Gv~i~~~t~v~~Li~~~g-------~V~GV~~~~----~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 225 GRLLYSLRARGVRILTQTDVESLETDHG-------RVIGATVVQ----GGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEeeCC-------EEEEEEEec----CCeEEEEEccceEEECCCCcccCHHHHH
Confidence 4456666778999999999999987644 999998864 235667887 799999999986544443
No 57
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.18 E-value=2.1e-10 Score=139.63 Aligned_cols=39 Identities=41% Similarity=0.761 Sum_probs=35.7
Q ss_pred CCcCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 231 NLFEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 231 ~~~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
...+.+|||||||||.+|+.+|..++++|.+|+||||+.
T Consensus 8 ~~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 8 DALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred CcceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 345578999999999999999999999999999999986
No 58
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.18 E-value=1.2e-10 Score=133.45 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=43.9
Q ss_pred cccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 412 DVTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 412 ~~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
...++..+.+. |++|+.++.|++|+.+++ +|+||.+.+ .+....+.||.||||+|++.
T Consensus 139 ~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g-------~v~Gv~~~~----~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 139 MRALIAAVRATPSITVLEGAEARRLLVDDG-------AVAGVLAAT----AGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHhCCCCEEEECcChhheeecCC-------EEEEEEEEe----CCeEEEEECCEEEEcCCCCc
Confidence 34444555554 799999999999876644 899998875 12345789999999999985
No 59
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.18 E-value=1.3e-10 Score=135.68 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=54.7
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEec-CCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVD-NKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSG 489 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~-~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SG 489 (748)
....++..|.+.|++|+.+++|++|..++ ++ ++++|.+.+.. +++..+|+||.||+|||+ ++..|+...|
T Consensus 234 l~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g------~v~gV~v~d~~--tg~~~~i~a~~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 234 LNVALACTAALAGAAVLNYAEVVSLIKDESTG------RIVGARVRDNL--TGKEFDVYAKVVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHHHHHHhCCcEEEeccEEEEEEEecCCC------cEEEEEEEECC--CCcEEEEEeCEEEECCCH-hHHHHHHhcc
Confidence 44567778888999999999999987764 21 78899886521 234557899999999997 5899988876
No 60
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.18 E-value=2.3e-10 Score=132.57 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred cchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 414 TWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 414 ~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
++...+.+. +++++.++.|++|+.+++ +|+||.+.+.. .++...|.||.||+|+|++..
T Consensus 137 ~L~~~~~~~~~i~i~~~~~v~~Li~~~g-------~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 137 TLFQTSLTYPQIMRYDEWFVTDLLVDDG-------RVCGLVAIEMA--EGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHhcCCCEEEeCeEEEEEEeeCC-------EEEEEEEEEcC--CCcEEEEecCEEEEcCCCCcc
Confidence 344444453 699999999999987654 99999886522 345678999999999999753
No 61
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.17 E-value=2.4e-10 Score=131.72 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=44.1
Q ss_pred chHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 415 WLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 415 ~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
++..+.+. |++|++++.|++|+.+++. +....+|+||.+.+. ..++...|.||.||+|+|++.
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~-~~~~g~v~Gv~~~~~--~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLITSDKL-GLPGRRVVGAYVLNR--NKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeeecccc-cCCCCEEEEEEEEEC--CCCcEEEEecCeEEECCCCCC
Confidence 34444444 7999999999999875410 000028999998752 234567899999999999985
No 62
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.15 E-value=2.9e-10 Score=125.73 Aligned_cols=34 Identities=47% Similarity=0.605 Sum_probs=32.2
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
|||||||||+.|+++|++|+++|++|+||||+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 7999999999999999999999999999999763
No 63
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=2.8e-10 Score=132.44 Aligned_cols=59 Identities=24% Similarity=0.153 Sum_probs=44.8
Q ss_pred ccchHHHHh-CCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 413 VTWLVDAVD-NGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~-~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
..++..+.+ .|++|+.++.|++|+.+++ +++||.+.+.. +++...|.||.||+|+|++.
T Consensus 141 ~~L~~~~~~~~gv~i~~~~~v~~Li~~~g-------~v~Gv~~~~~~--~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 141 HTLYSRALRFDNIHFYDEHFVTSLIVENG-------VFKGVTAIDLK--RGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHhcCCCEEEECCEEEEEEEECC-------EEEEEEEEEcC--CCeEEEEECCcEEEcCchhc
Confidence 344444555 4799999999999987654 89999886522 23456789999999999975
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.14 E-value=3.1e-10 Score=118.00 Aligned_cols=63 Identities=29% Similarity=0.373 Sum_probs=46.5
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEecc---CC-ceeEEEEEccEEEEcCCCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALN---KN-VTRKLQIKAKATISACGSL 479 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~---~g-~~~~~~i~Ak~VVlAaGai 479 (748)
....++..|.+.|++|+.++.|++|+.++++ ++.||.+.+.. .+ .....+|+||.||+|+|..
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g------~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDP------RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCC------cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 4455677788889999999999999876542 78999876420 01 1134689999999999974
No 65
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.14 E-value=3.8e-10 Score=128.82 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=43.8
Q ss_pred ccchHHHHh-CCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 413 VTWLVDAVD-NGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 413 ~~~L~~A~~-~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
..+...+.+ .|++|++++.|++|+.+++ +++||.+.+. +....+.||.||+|+|++..
T Consensus 132 ~~L~~~~~~~~gi~i~~~~~v~~l~~~~g-------~v~Gv~~~~~----~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 132 TTLVKKALNHPNIRIIEGENALDLLIETG-------RVVGVWVWNR----ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHhcCCcEEEECeEeeeeeccCC-------EEEEEEEEEC----CcEEEEEcCEEEECCCcccC
Confidence 334444555 4799999999999976644 8999988751 23457899999999999753
No 66
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.13 E-value=2.7e-10 Score=129.25 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=32.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHC--CCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~ 269 (748)
.++||||||+|++|+++|++|+++ |.+|+|||++.
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 469999999999999999999998 99999999985
No 67
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.13 E-value=7.2e-10 Score=123.64 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=57.2
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN 492 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~ 492 (748)
...+.+|.++|+++++.++|++++.++ .++||++.+. .+++.++|+|+.||.|||. |+-.++...+..+
T Consensus 168 ~~~a~~A~~~Ga~il~~~~v~~~~re~--------~v~gV~~~D~--~tg~~~~ira~~VVNAaGp-W~d~i~~~~~~~~ 236 (532)
T COG0578 168 AANARDAAEHGAEILTYTRVESLRREG--------GVWGVEVEDR--ETGETYEIRARAVVNAAGP-WVDEILEMAGLEQ 236 (532)
T ss_pred HHHHHHHHhcccchhhcceeeeeeecC--------CEEEEEEEec--CCCcEEEEEcCEEEECCCc-cHHHHHHhhcccC
Confidence 445678889999999999999987653 3889999984 3457899999999999997 6899999987654
No 68
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=111.66 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=49.5
Q ss_pred cchHHHHhCC-CEEEcCcEEEEEEEecCCCCCCCceEEEEEEEecc-----CC------ceeEEEEEccEEEEcCCCCCC
Q 004496 414 TWLVDAVDNG-AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALN-----KN------VTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 414 ~~L~~A~~~G-~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~-----~g------~~~~~~i~Ak~VVlAaGai~S 481 (748)
..++++.++| +++.+.++|.+|+..++ +++||...-.. .+ ....+++.|..||+++|+|+-
T Consensus 157 r~~re~~~~~~v~f~~RHrV~~l~~t~g-------rvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGG 229 (552)
T COG3573 157 RRLREAQRRGRVTFRFRHRVDGLTTTGG-------RVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGG 229 (552)
T ss_pred HHHHHHHhCCceEEEeeeeccceEeeCC-------eEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcCC
Confidence 3456677788 99999999999988776 99999754210 11 112357889999999999986
Q ss_pred HHHHHhc
Q 004496 482 PPLMISS 488 (748)
Q Consensus 482 p~LLl~S 488 (748)
..-|.+-
T Consensus 230 nhelVRr 236 (552)
T COG3573 230 NHELVRR 236 (552)
T ss_pred CHHHHHh
Confidence 6665553
No 69
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.12 E-value=6.7e-10 Score=122.64 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=33.7
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.+|||||||+|+.|+++|++|+++|++|+||||+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 469999999999999999999999999999999863
No 70
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.12 E-value=5.7e-10 Score=124.07 Aligned_cols=64 Identities=20% Similarity=0.172 Sum_probs=46.4
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
....+...+.+.|++|+++++|+++..+++ .+ .|.... + ++.|+.||+|+|+ +++.++...|+
T Consensus 151 l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~-------~~-~V~~~~---g-----~i~ad~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 151 VAEAMAELIQARGGEIRLGAEVTALDEHAN-------GV-VVRTTQ---G-----EYEARTLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEecCC-------eE-EEEECC---C-----EEEeCEEEECCCc-chHHHHHHhCC
Confidence 344455566678999999999999865433 33 344321 2 6889999999997 68899888886
Q ss_pred C
Q 004496 491 E 491 (748)
Q Consensus 491 ~ 491 (748)
.
T Consensus 214 ~ 214 (393)
T PRK11728 214 E 214 (393)
T ss_pred C
Confidence 5
No 71
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.11 E-value=6.9e-10 Score=128.56 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=41.6
Q ss_pred HhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 420 VDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 420 ~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
.+.+++|++++.|++|+.+++++ ++|+||.+.+.. .++...|.||.||||+|++.
T Consensus 137 ~~~~~~i~~~~~v~~Ll~d~~~~----GrV~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFERIFIVKLLLDKNTP----NRIAGAVGFNVR--ANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEcccEEEEEEecCCCC----CeEEEEEEEEeC--CCcEEEEECCEEEECCCccc
Confidence 34458999999999998764210 189999986532 34567899999999999974
No 72
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.11 E-value=5.6e-10 Score=130.03 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=41.0
Q ss_pred CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 423 GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 423 G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
|++|++++.|++|+.++++ +|+||.+.+.. .++...|.||.||||+|++..
T Consensus 147 gV~i~~~t~v~~Li~dd~g------rV~GV~~~~~~--~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGN------RARGIIARNLV--TGEIETHSADAVILATGGYGN 197 (603)
T ss_pred CcEEEeCcEEEEEEEcCCC------EEEEEEEEECC--CCcEEEEEcCEEEECCCCCcC
Confidence 6999999999999876542 89999987521 235568899999999999853
No 73
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.08 E-value=7e-10 Score=115.04 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=45.7
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEecc---CC-ceeEEEEEccEEEEcCCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALN---KN-VTRKLQIKAKATISACGS 478 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~---~g-~~~~~~i~Ak~VVlAaGa 478 (748)
....++..+.+.|++|+.++.|++|+.+++. .+++||.+.+.. .+ .....+|+||.||.|+|.
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~-----~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDT-----VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCC-----CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 3445566777889999999999999876541 279999885420 01 112468999999999995
No 74
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.07 E-value=9.7e-10 Score=125.89 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=48.8
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhc-CCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISS-GLE 491 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~S-Gi~ 491 (748)
..++..|.+.|++|+.+++|++|..+++ . .+|.+.+.. +++..+|+||.||+|+|+ ++..++... |+.
T Consensus 159 ~~l~~~A~~~Ga~i~~~~~V~~i~~~~~-------~-~~v~~~~~~--~g~~~~i~a~~VVnAaG~-wa~~l~~~~~g~~ 227 (508)
T PRK12266 159 VLNARDAAERGAEILTRTRVVSARRENG-------L-WHVTLEDTA--TGKRYTVRARALVNAAGP-WVKQFLDDGLGLP 227 (508)
T ss_pred HHHHHHHHHcCCEEEcCcEEEEEEEeCC-------E-EEEEEEEcC--CCCEEEEEcCEEEECCCc-cHHHHHhhccCCC
Confidence 4456678888999999999999865432 3 466665421 234568999999999997 578887643 553
No 75
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.07 E-value=9.3e-10 Score=124.53 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=48.9
Q ss_pred ccccchHHHHh----CC--CEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHH
Q 004496 411 TDVTWLVDAVD----NG--AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPL 484 (748)
Q Consensus 411 ~~~~~L~~A~~----~G--~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~L 484 (748)
....+...+.+ .| ++|+++++|+.|..+++ ....|.+.. + +|+|+.||+|||+ +|..|
T Consensus 213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-------~~~~V~T~~---G-----~i~A~~VVvaAG~-~S~~L 276 (497)
T PTZ00383 213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSND-------SLYKIHTNR---G-----EIRARFVVVSACG-YSLLF 276 (497)
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-------CeEEEEECC---C-----EEEeCEEEECcCh-hHHHH
Confidence 34556677777 67 78999999999866533 344455422 2 6899999999997 69999
Q ss_pred HHhcCCC
Q 004496 485 MISSGLE 491 (748)
Q Consensus 485 Ll~SGi~ 491 (748)
+..+|++
T Consensus 277 a~~~Gi~ 283 (497)
T PTZ00383 277 AQKMGYG 283 (497)
T ss_pred HHHhCCC
Confidence 9999985
No 76
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=1.2e-09 Score=125.21 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=49.3
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhc-CCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISS-GLE 491 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~S-Gi~ 491 (748)
..++..|.+.|++|+.+++|++|..++ ...+|.+.+ +.++..+|+|+.||+|+|+ ++..|+... |+.
T Consensus 159 ~~l~~~a~~~Ga~i~~~~~V~~i~~~~--------~~~~v~~~~---~~g~~~~i~a~~VVnAaG~-wa~~l~~~~~g~~ 226 (502)
T PRK13369 159 VLNALDAAERGATILTRTRCVSARREG--------GLWRVETRD---ADGETRTVRARALVNAAGP-WVTDVIHRVAGSN 226 (502)
T ss_pred HHHHHHHHHCCCEEecCcEEEEEEEcC--------CEEEEEEEe---CCCCEEEEEecEEEECCCc-cHHHHHhhccCCC
Confidence 345667888999999999999986543 234576655 2245678999999999997 588887743 653
No 77
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.05 E-value=3e-09 Score=120.66 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=50.2
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
....++..+.+.|++|+++++|++|..++++ .+ .|.+.++. .+...+++|+.||+|||+ ++..|+..+|+
T Consensus 180 l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~------~v-~v~~~~~~--~g~~~~i~A~~VV~AAG~-~s~~La~~~Gi 249 (483)
T TIGR01320 180 LTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG------SW-TVTVKNTR--TGGKRTLNTRFVFVGAGG-GALPLLQKSGI 249 (483)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC------eE-EEEEeecc--CCceEEEECCEEEECCCc-chHHHHHHcCC
Confidence 4456677777889999999999998654431 22 23332211 123346899999999997 68999999988
Q ss_pred C
Q 004496 491 E 491 (748)
Q Consensus 491 ~ 491 (748)
.
T Consensus 250 ~ 250 (483)
T TIGR01320 250 P 250 (483)
T ss_pred C
Confidence 6
No 78
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.02 E-value=1.2e-09 Score=122.87 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=48.8
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEec-CCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHh
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVD-NKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMIS 487 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~-~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~ 487 (748)
....+...+.+.|++|+++++|++|+.++ + .+++||.... + ...|+||.||||+|++...+-|++
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~------g~v~gv~~~~---~---~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFD------GAHDGPLTTV---G---THRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCC------CeEEEEEEcC---C---cEEEEcCEEEEcCCCcccCHHHHH
Confidence 44556667778899999999999997763 2 1889988642 1 247889999999999976654443
No 79
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.01 E-value=7.1e-09 Score=117.68 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=31.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+||||||||++|+++|..|+++|.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999974
No 80
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.96 E-value=1.4e-08 Score=115.29 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=53.8
Q ss_pred ccccchHHHHhCC-CEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcC
Q 004496 411 TDVTWLVDAVDNG-AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSG 489 (748)
Q Consensus 411 ~~~~~L~~A~~~G-~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SG 489 (748)
....+...+.+.| ++|+++++|++|..++++ ++ .|.+.+.. .++..+|.|+.||+|||+ ++..|+..+|
T Consensus 185 l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg------~~-~v~~~~~~--~G~~~~i~A~~VVvaAGg-~s~~L~~~~G 254 (494)
T PRK05257 185 LTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG------SW-TVTVKDLK--TGEKRTVRAKFVFIGAGG-GALPLLQKSG 254 (494)
T ss_pred HHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC------CE-EEEEEEcC--CCceEEEEcCEEEECCCc-chHHHHHHcC
Confidence 3445556666666 899999999998654431 23 23332211 122346899999999997 6899999998
Q ss_pred CCC-------CccccccccC
Q 004496 490 LEN-------PNIGTNLHLH 502 (748)
Q Consensus 490 i~~-------p~VG~nL~~H 502 (748)
+.. |--|++|...
T Consensus 255 i~~~~~~~i~PvrGq~l~~~ 274 (494)
T PRK05257 255 IPEAKGYGGFPVSGQFLVCE 274 (494)
T ss_pred CCccCCCCeeeeeEEEEEcC
Confidence 862 2236666553
No 81
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.94 E-value=3.7e-09 Score=116.35 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=31.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|||||||+|++|+++|++|+++|++|+||||+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999985
No 82
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.93 E-value=2.1e-08 Score=113.17 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=52.7
Q ss_pred cccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 412 DVTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 412 ~~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
...++..+.+. |++|+++++|+.|..++++ .++ |.+..+. .++..+++|+.||+|||+ ++..|+..+|+
T Consensus 187 ~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~------~w~-v~v~~t~--~g~~~~i~Ad~VV~AAGa-wS~~La~~~Gi 256 (497)
T PRK13339 187 TRKLAKHLESHPNAQVKYNHEVVDLERLSDG------GWE-VTVKDRN--TGEKREQVADYVFIGAGG-GAIPLLQKSGI 256 (497)
T ss_pred HHHHHHHHHhCCCcEEEeCCEEEEEEECCCC------CEE-EEEEecC--CCceEEEEcCEEEECCCc-chHHHHHHcCC
Confidence 34555666544 7999999999998655231 222 3322111 122336899999999997 68999999998
Q ss_pred CC-------CccccccccC
Q 004496 491 EN-------PNIGTNLHLH 502 (748)
Q Consensus 491 ~~-------p~VG~nL~~H 502 (748)
.. |--|++|...
T Consensus 257 ~~~~~~~i~PvkGq~l~l~ 275 (497)
T PRK13339 257 PESKHLGGFPISGQFLRCT 275 (497)
T ss_pred CccCCCceEeeeEEEEEec
Confidence 62 2336666654
No 83
>PLN02661 Putative thiazole synthesis
Probab=98.93 E-value=8.6e-09 Score=109.96 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=33.1
Q ss_pred CcceeEEEECCCchHHHHHHHHHHC-CCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~-G~kVlVLEkG~ 269 (748)
..++||+|||+|++|+++|+.|+++ |++|+||||+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 3579999999999999999999986 89999999975
No 84
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.91 E-value=6.6e-09 Score=118.83 Aligned_cols=190 Identities=22% Similarity=0.191 Sum_probs=103.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCcCCCchhhhhhhCCceecCCCcEEEeccCcccchh
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAEDYSSLEGPSMHELYESGGLLSTLDGKFMVFAGSAVGGGS 313 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lGGgs 313 (748)
..+|||||||||.+|+.||..++++|.+|+||||..... |.++-..+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r---------------------------------g~t~~a~g 50 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR---------------------------------GHTVAAQG 50 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC---------------------------------Cchhhhcc
Confidence 458999999999999999999999999999999986422 11111111
Q ss_pred hhhccccccCC-hhHHhhhh--hh-cCCCCCCchhhHHHHHHhhhhcCcCCCCccCchhHHHHHHHHHHcCCCccccCCC
Q 004496 314 AVNWSACIETP-DSVLRDWF--VE-HKIPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLRKGCENLGFKVESVARN 389 (748)
Q Consensus 314 ~in~~~~~r~~-~~~~~~W~--~~-~g~~~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~n 389 (748)
.+|........ ..+-.+|. +. .+-.+...++....+- .........+++.|.++...+-.
T Consensus 51 G~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd~i~~~~----------------~~ap~~v~~Le~~G~~f~r~~~G 114 (562)
T COG1053 51 GINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQDAVEAFA----------------DEAPEAVDELEKWGVPFSRTEDG 114 (562)
T ss_pred cccccccCcccccCCCHHHHHHHHHhccCCcCCHHHHHHHH----------------HhhHHHHHHHHHhCCCcccCCCc
Confidence 12222110000 00000000 00 0111111111111111 01123445677888887543211
Q ss_pred CCCCccceecc--CCCCCCcccc--ccccchHHHHh-CCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeE
Q 004496 390 TPEEHYCGSCN--YGCRTGDKKG--TDVTWLVDAVD-NGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRK 464 (748)
Q Consensus 390 ~~~~~~~g~~~--~g~~~g~k~~--~~~~~L~~A~~-~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~ 464 (748)
.......|... ..|..+.+.+ ...++...+.+ .+++|+.+..|++|+.++++ .+.||...+.. +++.
T Consensus 115 ~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~------~v~Gvv~~~~~--~g~~ 186 (562)
T COG1053 115 RIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG------GVAGVVARDLR--TGEL 186 (562)
T ss_pred cccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC------cEEEEEEEEec--CCcE
Confidence 00000001110 1233333322 23344455555 45789999999999888662 58999888743 3467
Q ss_pred EEEEccEEEEcCCCCC
Q 004496 465 LQIKAKATISACGSLL 480 (748)
Q Consensus 465 ~~i~Ak~VVlAaGai~ 480 (748)
..++||.||+|+|+.+
T Consensus 187 ~~~~akavilaTGG~g 202 (562)
T COG1053 187 YVFRAKAVILATGGAG 202 (562)
T ss_pred EEEecCcEEEccCCce
Confidence 7888999999999987
No 85
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.89 E-value=1.1e-08 Score=114.92 Aligned_cols=35 Identities=51% Similarity=0.808 Sum_probs=33.5
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.|||||||+|++|+++|+.|+++|++|+||||+.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 59999999999999999999999999999999974
No 86
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.89 E-value=9.8e-09 Score=113.76 Aligned_cols=36 Identities=47% Similarity=0.609 Sum_probs=34.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
..+||||||+|++|+++|++|+++|.+|+|+|++..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 579999999999999999999999999999999863
No 87
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.88 E-value=6.1e-09 Score=107.24 Aligned_cols=39 Identities=36% Similarity=0.407 Sum_probs=35.6
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
+....||||||+|+-|+++|++||++|.++++||+-+..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~p 42 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLP 42 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCC
Confidence 446799999999999999999999999999999998754
No 88
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=98.87 E-value=2.1e-08 Score=93.39 Aligned_cols=110 Identities=22% Similarity=0.325 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHhccccCCCCCCccccCCCchHHHHHHHhhCCCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhhhhcchh
Q 004496 24 SSSEIESLAAICQTLVPPLPPETITKQHSHNQAIVSFYKASASQHPIPHEVAELMVKRGQPQAVFLARLILTLLSFRLGT 103 (748)
Q Consensus 24 ~~~q~~~l~ai~d~~~p~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~tr~g~ 103 (748)
|+.|+++|.+|||+|||.-. .+++++.++.+-+.+.+.....++.++.++.-|..|+...-.
T Consensus 1 t~~e~~~L~ai~~~iiP~~~------------------~pgA~~~~v~~fId~~l~~~~~~~~~~~~~~gl~~ld~~a~~ 62 (131)
T PF13618_consen 1 TAEEAATLAAIADTIIPADD------------------TPGASDAGVPEFIDRMLADCYMPEDRRAFRAGLAALDAYAQK 62 (131)
T ss_pred CHHHHHHHHHHHHHhcCCCC------------------CCChhhcChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999852 236678888888888888767889999999999999877644
Q ss_pred hhhccccccccCCCcccccCCCCHHHHHHHHHhhhhcCCC-------chHHHHHHHHHHHHHhhhhccc
Q 004496 104 LLLCGYLCFDWNWPFIHNFSEISLEKREKILKKWSRERYL-------LPLRIVFVMIKMFCLFDFFART 165 (748)
Q Consensus 104 ~~l~g~~~~~~~~~~~~~f~~~~~~~re~~L~~w~~s~~~-------~~~r~~~~~l~~l~~~~~~~~~ 165 (748)
.. | ++|.+++.++|+++|+.+..+ .. ...+.+|..|+.+++..||+.+
T Consensus 63 ~~--g-----------~~F~~l~~~~~~~lL~~~~~~-~~~~~~~~~~~~~~ff~~lr~~~~~gyyt~p 117 (131)
T PF13618_consen 63 RY--G-----------KSFAELSPAQREALLDALEKS-EAAGPDWDGIPGARFFQQLRNLTLQGYYTSP 117 (131)
T ss_pred Hh--C-----------CChhhCCHHHHHHHHHHHHhc-cccccccccCcHHHHHHHHHHHHHHHHhcCC
Confidence 31 3 289999999999999999998 34 3478999999999999999664
No 89
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.86 E-value=8.8e-09 Score=114.60 Aligned_cols=36 Identities=53% Similarity=0.746 Sum_probs=34.3
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.+|||||||+|++|+++|++|+++|++|+||||+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 479999999999999999999999999999999975
No 90
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.85 E-value=1.2e-08 Score=116.14 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=49.8
Q ss_pred CCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHH
Q 004496 404 RTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPP 483 (748)
Q Consensus 404 ~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~ 483 (748)
+.|+......++...+.+.|++|+++++|++|+.+++ +.++|.... + ..+.||.||.++.. ..+.
T Consensus 219 p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g-------~g~~~~~~~-----g--~~~~ad~vv~~~~~-~~~~ 283 (487)
T COG1233 219 PRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGG-------KGVGVRTSD-----G--ENIEADAVVSNADP-ALLA 283 (487)
T ss_pred eeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCC-------cceEEeccc-----c--ceeccceeEecCch-hhhh
Confidence 4566666777777788889999999999999998876 544444432 1 57889999998886 3444
Q ss_pred HHHh
Q 004496 484 LMIS 487 (748)
Q Consensus 484 LLl~ 487 (748)
.|..
T Consensus 284 ~l~~ 287 (487)
T COG1233 284 RLLG 287 (487)
T ss_pred hhhh
Confidence 4433
No 91
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.84 E-value=2.4e-08 Score=110.66 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=60.3
Q ss_pred eeccCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcC
Q 004496 397 GSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISAC 476 (748)
Q Consensus 397 g~~~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAa 476 (748)
+.+..+...-....+..++...|.+.|+.|+.+|.|++|....+ +..||++.. | .|++..||.||
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-------~~~gVeT~~---G-----~iet~~~VNaa 239 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-------KFGGVETPH---G-----SIETECVVNAA 239 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-------CccceeccC---c-----ceecceEEech
Confidence 33333333334556667788888899999999999999988776 445888764 4 79999999999
Q ss_pred CCCCCHHHHHhcCCCCCc
Q 004496 477 GSLLTPPLMISSGLENPN 494 (748)
Q Consensus 477 Gai~Sp~LLl~SGi~~p~ 494 (748)
|. |...+=..+|++.|-
T Consensus 240 Gv-WAr~Vg~m~gvkvPL 256 (856)
T KOG2844|consen 240 GV-WAREVGAMAGVKVPL 256 (856)
T ss_pred hH-HHHHhhhhcCCcccc
Confidence 95 556666777877553
No 92
>PRK10015 oxidoreductase; Provisional
Probab=98.77 E-value=4.3e-08 Score=110.08 Aligned_cols=36 Identities=50% Similarity=0.777 Sum_probs=33.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.+|||||||+|++|+++|+.||++|++|+||||+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 359999999999999999999999999999999875
No 93
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.77 E-value=4.1e-08 Score=109.68 Aligned_cols=42 Identities=29% Similarity=0.575 Sum_probs=38.6
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAED 275 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~ 275 (748)
+.+|||||||+|.+|+++|..|+++|+||++||+.+++.+..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~ 43 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGES 43 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccc
Confidence 457999999999999999999999999999999999887654
No 94
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.75 E-value=1e-08 Score=115.12 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=0.0
Q ss_pred HhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC
Q 004496 420 VDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE 491 (748)
Q Consensus 420 ~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~ 491 (748)
.+.|++|++++.|.+++.+++ +++||.+.+. .+ ..+|+||.||-|+|- -.|+.++|..
T Consensus 101 ~e~gv~v~~~t~v~~v~~~~~-------~i~~V~~~~~---~g-~~~i~A~~~IDaTG~---g~l~~~aG~~ 158 (428)
T PF12831_consen 101 AEAGVEVLLGTRVVDVIRDGG-------RITGVIVETK---SG-RKEIRAKVFIDATGD---GDLAALAGAP 158 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-------cccccccccc---cc-ccccccccccccccc---cccccccccc
Confidence 456899999999999988765 8999999762 22 679999999999993 5888999875
No 95
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.75 E-value=5.8e-09 Score=113.06 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=50.7
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHh
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMIS 487 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~ 487 (748)
-|.+.|+++..+.+|.+|+.++++ ++.|+++++. -+|+++.|+||.||.|+|.+ |-.|.+.
T Consensus 233 TA~r~GA~v~Nh~ev~~Llkd~~~------kv~Ga~~rD~--iTG~e~~I~Ak~VVNATGpf-sDsIr~M 293 (680)
T KOG0042|consen 233 TAARNGATVLNHVEVVSLLKDKDG------KVIGARARDH--ITGKEYEIRAKVVVNATGPF-SDSIRKM 293 (680)
T ss_pred HHHhcchhhhhHHHHHHHhhCCCC------ceeeeEEEEe--ecCcEEEEEEEEEEeCCCCc-cHHHHhh
Confidence 467889999999999999887763 8999999884 45689999999999999997 5555544
No 96
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.75 E-value=2e-08 Score=108.99 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=43.7
Q ss_pred ccchHHHHh-CCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCC
Q 004496 413 VTWLVDAVD-NGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSL 479 (748)
Q Consensus 413 ~~~L~~A~~-~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai 479 (748)
.+++..+.+ .+++|+.++.+.+|+.+++ ..+.||.+.+. + ++..++.|+.||||+|++
T Consensus 137 ~~L~~~v~~~p~I~v~e~~~a~~li~~~~------~~~~Gv~~~~~--~-~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 137 TALLKKVRNRPNITVLEGAEALDLIIEDG------IGVAGVLVLNR--N-GELGTFRAKAVVLATGGL 195 (518)
T ss_pred HHHHHHHhcCCCcEEEecchhhhhhhcCC------ceEeEEEEecC--C-CeEEEEecCeEEEecCCC
Confidence 444444544 3699999999999988876 14559998762 1 156789999999999986
No 97
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.75 E-value=2.3e-08 Score=114.58 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=49.9
Q ss_pred CCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHH
Q 004496 404 RTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPP 483 (748)
Q Consensus 404 ~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~ 483 (748)
+.|+......++...+.+.|++|+++++|++|..+++ ++.||++.+ + .++.|+.||+|+|...+-.
T Consensus 224 ~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-------~~~gv~~~~---g----~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 224 PKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-------KAVGVKLAD---G----EKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-------cEEEEEeCC---C----CEEEcCEEEECCChHHHHH
Confidence 4444444556666667788999999999999987654 788998754 2 2678999999999765443
Q ss_pred HH
Q 004496 484 LM 485 (748)
Q Consensus 484 LL 485 (748)
.|
T Consensus 290 ~L 291 (493)
T TIGR02730 290 KL 291 (493)
T ss_pred Hh
Confidence 34
No 98
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.74 E-value=8.8e-09 Score=122.09 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=32.5
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
++||||||||++|+++|++|+++|++|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4899999999999999999999999999999985
No 99
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.73 E-value=5.6e-08 Score=110.87 Aligned_cols=35 Identities=40% Similarity=0.497 Sum_probs=32.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|||||||||.+|+.||..+|+.|++|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 46999999999999999999999999999999863
No 100
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=4.8e-07 Score=102.40 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=45.0
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEE-ccEEEEcCCCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIK-AKATISACGSLL 480 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~-Ak~VVlAaGai~ 480 (748)
..+...+.++|++|+++++|++|+++.++ ..++|+||++.. ++.++...+. +|.||++.|++.
T Consensus 230 ~PL~~~Le~~GV~f~~~t~VtdL~~~~d~---~~~~VtgI~~~~--~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 230 LPLIKYLEDHGVDFQYGTKVTDIDFDITG---GKKTATAIHLTR--NGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCC---CceEEEEEEEEe--CCceeEEEecCCCEEEEeCCcCc
Confidence 33445566789999999999999886221 124899999975 1333444455 499999999974
No 101
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.64 E-value=8.3e-08 Score=110.33 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=49.5
Q ss_pred CCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHH
Q 004496 404 RTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPP 483 (748)
Q Consensus 404 ~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~ 483 (748)
+.|+......++...+.+.|++|++++.|++|..+++ ++++|++.+ + .++.|+.||+|++...+-.
T Consensus 214 ~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-------~~~~V~~~~---g----~~~~ad~VI~a~~~~~~~~ 279 (502)
T TIGR02734 214 PRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-------RATAVHLAD---G----ERLDADAVVSNADLHHTYR 279 (502)
T ss_pred cCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-------EEEEEEECC---C----CEEECCEEEECCcHHHHHH
Confidence 3344444555666666778999999999999987654 788887753 2 2578999999999755554
Q ss_pred HHH
Q 004496 484 LMI 486 (748)
Q Consensus 484 LLl 486 (748)
.|+
T Consensus 280 ~l~ 282 (502)
T TIGR02734 280 RLL 282 (502)
T ss_pred Hhc
Confidence 444
No 102
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.62 E-value=1.3e-07 Score=102.44 Aligned_cols=28 Identities=50% Similarity=0.696 Sum_probs=25.7
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEE
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVL 265 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVL 265 (748)
||||||+|.+|+.||+.+|+.|.+|+|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999999999999
No 103
>PRK06185 hypothetical protein; Provisional
Probab=98.58 E-value=1.8e-07 Score=104.61 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=33.8
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..+|||||||+|++|+++|..|+++|++|+|||+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 357999999999999999999999999999999985
No 104
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.56 E-value=3.6e-07 Score=97.61 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=57.2
Q ss_pred cCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCC
Q 004496 400 NYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSL 479 (748)
Q Consensus 400 ~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai 479 (748)
.++.+.|+......+....+.+.|++|.+++.|.+|+++++ +|.||.+.+ | .++++|.||--|+-+
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~g-------ka~GV~L~d---G----~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSG-------KAVGVRLAD---G----TEVRSKIVVSNATPW 320 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCC-------eEEEEEecC---C----cEEEeeeeecCCchH
Confidence 34556676666666777778889999999999999999885 999999986 4 367789999999987
Q ss_pred CCHHHHH
Q 004496 480 LTPPLMI 486 (748)
Q Consensus 480 ~Sp~LLl 486 (748)
.|=.=|+
T Consensus 321 ~Tf~kLl 327 (561)
T KOG4254|consen 321 DTFEKLL 327 (561)
T ss_pred HHHHHhC
Confidence 7763333
No 105
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.56 E-value=4.7e-07 Score=103.84 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=48.2
Q ss_pred CCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHH
Q 004496 405 TGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPP 483 (748)
Q Consensus 405 ~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~ 483 (748)
.|+-.....++...+.+.|++|+++++|++|+.+++ +++||.+.+. ..++..++.||.||+++....+..
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-------~~~gv~~~~~--~~~~~~~~~ad~VI~~~~~~~~~~ 297 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-------RAGWVVVVDS--RKQEDLNVKADDVVANLPPQSLLE 297 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-------eEEEEEEecC--CCCceEEEECCEEEECCCHHHHHH
Confidence 444444555555555567999999999999987765 7888887641 112224688999999998643333
No 106
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.54 E-value=1.6e-07 Score=95.98 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=43.3
Q ss_pred CEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC--HHHHHhc
Q 004496 424 AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT--PPLMISS 488 (748)
Q Consensus 424 ~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S--p~LLl~S 488 (748)
++|+.+++|++|+.+++ +|.||++.+ ..+++..+.++.||+|+|++.- -.+|..-
T Consensus 160 ~ki~~nskvv~il~n~g-------kVsgVeymd---~sgek~~~~~~~VVlatGGf~ysd~~lLKey 216 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNG-------KVSGVEYMD---ASGEKSKIIGDAVVLATGGFGYSDKELLKEY 216 (477)
T ss_pred HhhhhcceeeeeecCCC-------eEEEEEEEc---CCCCccceecCceEEecCCcCcChHHHHHHh
Confidence 99999999999874433 999999997 3456677889999999999975 3444443
No 107
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.53 E-value=7.3e-07 Score=99.01 Aligned_cols=34 Identities=41% Similarity=0.656 Sum_probs=32.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+|||||||+|.+|+++|..|+++|++|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 6999999999999999999999999999999984
No 108
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.53 E-value=2e-06 Score=93.54 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=57.8
Q ss_pred cccchHHHHhC-CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 412 DVTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 412 ~~~~L~~A~~~-G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
.+.++..+.+. |+++.++++|++|...++ | -.-|.+.+. .+++..+|+||-|+|.||+ ++=.||++|||
T Consensus 184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~d--g-----~W~v~~~~~--~~~~~~~v~a~FVfvGAGG-~aL~LLqksgi 253 (488)
T PF06039_consen 184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGD--G-----RWEVKVKDL--KTGEKREVRAKFVFVGAGG-GALPLLQKSGI 253 (488)
T ss_pred HHHHHHHHHhCCCcEEEecCEeCeeEECCC--C-----CEEEEEEec--CCCCeEEEECCEEEECCch-HhHHHHHHcCC
Confidence 34456666666 799999999999876554 1 123444432 2345679999999999998 68999999998
Q ss_pred CCCccccccccCccceE
Q 004496 491 ENPNIGTNLHLHPVLLA 507 (748)
Q Consensus 491 ~~p~VG~nL~~Hp~~~~ 507 (748)
.. |+++.-=|+...
T Consensus 254 ~e---~~gyggfPVsG~ 267 (488)
T PF06039_consen 254 PE---GKGYGGFPVSGQ 267 (488)
T ss_pred hh---hcccCCCcccce
Confidence 53 455555555443
No 109
>PRK07208 hypothetical protein; Provisional
Probab=98.50 E-value=1.6e-06 Score=99.04 Aligned_cols=40 Identities=35% Similarity=0.341 Sum_probs=36.1
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
+...||||||||++|+++|++|+++|++|+|+|+.+...+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4568999999999999999999999999999999876554
No 110
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.50 E-value=3e-06 Score=93.16 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=49.9
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhc
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISS 488 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~S 488 (748)
.++...+.+.|++|+.+++|+++..+++ ++++|.+.. + +...+.||.||||+|++-|..|+...
T Consensus 267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~-------~v~~V~t~~---g--~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 267 EALKHRFEQLGGVMLPGDRVLRAEFEGN-------RVTRIHTRN---H--RDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHCCCEEEECcEEEEEEeeCC-------eEEEEEecC---C--ccceEECCEEEEccCCCcCHHHHhhc
Confidence 3445556678999999999999887765 788877643 1 23478999999999998789887775
No 111
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.48 E-value=2.8e-07 Score=102.47 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=33.9
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
...+||+|||+|++|+++|+.|+++|++|+||||.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 457999999999999999999999999999999986
No 112
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.48 E-value=3e-07 Score=96.98 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=54.8
Q ss_pred cccchH-HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEec---cCCc-----eeEEEEEccEEEEcCCCCC--
Q 004496 412 DVTWLV-DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATAL---NKNV-----TRKLQIKAKATISACGSLL-- 480 (748)
Q Consensus 412 ~~~~L~-~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~---~~g~-----~~~~~i~Ak~VVlAaGai~-- 480 (748)
...||. .|++.|++|..++.+.+++++.++ .|.||.+.+. .+|. .+-..++||..|.|-|.-+
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~edg------sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDEDG------SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCCC------cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 344554 477789999999999999998874 8999988763 1111 1235789999999988654
Q ss_pred CHHHHHhcCCC
Q 004496 481 TPPLMISSGLE 491 (748)
Q Consensus 481 Sp~LLl~SGi~ 491 (748)
|-+++.+-++.
T Consensus 259 skqi~kkf~Lr 269 (621)
T KOG2415|consen 259 SKQIIKKFDLR 269 (621)
T ss_pred HHHHHHHhCcc
Confidence 67899888765
No 113
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.44 E-value=1.9e-06 Score=96.47 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=34.9
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
...+|||+|||||++|+++|..|+++|++|+|+||.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 34579999999999999999999999999999999864
No 114
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.42 E-value=3.5e-07 Score=95.74 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=34.2
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+..+||||||+|.+|+++|+.|++.|.||+||||.-
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4467999999999999999999999999999999973
No 115
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.41 E-value=1.3e-06 Score=87.90 Aligned_cols=32 Identities=41% Similarity=0.668 Sum_probs=30.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+++|||+|++|+++|+.|+++|.+|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 68999999999999999999999999999995
No 116
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.41 E-value=2.8e-06 Score=94.65 Aligned_cols=31 Identities=39% Similarity=0.614 Sum_probs=29.4
Q ss_pred EEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 240 VVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 240 VIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
||||+|++|+++|..|+++|++|+||||.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence 6999999999999999999999999999864
No 117
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.40 E-value=7.7e-06 Score=93.04 Aligned_cols=33 Identities=52% Similarity=0.622 Sum_probs=31.5
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
+|||||||||++|+.+|.+|++.|++|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 489999999999999999999999999999993
No 118
>PLN02697 lycopene epsilon cyclase
Probab=98.39 E-value=1.5e-06 Score=99.22 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=32.6
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
...|||||||+|++|+++|..|+++|++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 34699999999999999999999999999999985
No 119
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.38 E-value=6.1e-07 Score=97.65 Aligned_cols=37 Identities=35% Similarity=0.446 Sum_probs=32.3
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
+|||||||+|++|+++|..|+++|++|+|+||.....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 5999999999999999999999999999999987543
No 120
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.36 E-value=1.8e-06 Score=86.51 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=34.3
Q ss_pred chHH-HHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcC
Q 004496 415 WLVD-AVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSG 489 (748)
Q Consensus 415 ~L~~-A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SG 489 (748)
|+.. +.+.+++++++++|+++..+++ + --|.+.+ + .++.|+.||+|+|.+..|+.+.--|
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-------~-w~v~~~~---~----~~~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-------G-WTVTTRD---G----RTIRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-------T-EEEEETT---S-----EEEEEEEEE---SSCSB---S-TT
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-------E-EEEEEEe---c----ceeeeeeEEEeeeccCCCCcccccc
Confidence 4444 3455788999999999977754 3 2244432 2 4788999999999988888765444
No 121
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.35 E-value=2e-06 Score=99.13 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=57.0
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
....++..|.+.|++|+++++|++|..+++ ++.||++.+.. +++..+|+|+.||+|||+ ++..|+...|+
T Consensus 130 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-------~v~gv~v~~~~--~g~~~~i~a~~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 130 LVAANVLDAQEHGARIFTYTKVTGLIREGG-------RVTGVKVEDHK--TGEEERIEAQVVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEECC-------EEEEEEEEEcC--CCcEEEEEcCEEEECCCc-chHHHHHhcCC
Confidence 345567788889999999999999976654 88999987532 234568999999999996 68999988887
Q ss_pred CC
Q 004496 491 EN 492 (748)
Q Consensus 491 ~~ 492 (748)
..
T Consensus 200 ~~ 201 (516)
T TIGR03377 200 DI 201 (516)
T ss_pred CC
Confidence 43
No 122
>PLN02985 squalene monooxygenase
Probab=98.34 E-value=4.8e-06 Score=95.48 Aligned_cols=37 Identities=38% Similarity=0.610 Sum_probs=33.9
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
....+||||||+|++|+++|..|+++|++|+||||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3457899999999999999999999999999999974
No 123
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.32 E-value=1.6e-06 Score=96.11 Aligned_cols=36 Identities=44% Similarity=0.535 Sum_probs=33.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
..+||||||+|++|+++|..|++.|++|+|+||+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 468999999999999999999999999999999864
No 124
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.31 E-value=5.9e-06 Score=89.16 Aligned_cols=212 Identities=18% Similarity=0.098 Sum_probs=106.9
Q ss_pred CcCcceeEEEECCCchHHHHHHHHHHC-----CCcEEEEcccCCCCCCCCCCcCCCchhhhhhhCCceecCCCcEEEecc
Q 004496 232 LFEIKCDVVVVGSGCGGGVAAAVLASS-----GQKVLVLEKGNYFVAEDYSSLEGPSMHELYESGGLLSTLDGKFMVFAG 306 (748)
Q Consensus 232 ~~~~~~DVVIVGsG~aG~~aA~~LAe~-----G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G 306 (748)
.+...||+||||+|.+|+.+|++|+.. .++|+++|+|......-.+....+. ..+.....+.+..|
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~---------~~c~~~~~~~I~~G 84 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKL---------EKCPKCDPCPIVIG 84 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccccccch---------hhcCCCCCceeEec
Confidence 356789999999999999999999963 6889999999754433222211100 00111113334433
Q ss_pred Ccccchhhhhcccc-ccCChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCCCccCchhHHHHH-HHHHHcCCCcc
Q 004496 307 SAVGGGSAVNWSAC-IETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLR-KGCENLGFKVE 384 (748)
Q Consensus 307 ~~lGGgs~in~~~~-~r~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~-~~~~~lG~~~~ 384 (748)
+||...+..... +++. +-.|-.+.--+.+..-+...+-+.+.-.+|-........ ....+. ....++|.+..
T Consensus 85 --~GgaG~fs~g~lnl~P~---~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~-~~e~ikd~e~~aa~a~~e 158 (486)
T COG2509 85 --FGGAGLFSDGILNLRPI---RGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSD-LTEQIKDIEFRAAGAGEE 158 (486)
T ss_pred --ccccccccccceecccc---cccchhhhhCChHHHHHHHhccchhheecCCCcCcccCC-chhhhhHHHHHHhCCCce
Confidence 566554443322 2221 111111100000000000111111111223221111111 122232 23445566655
Q ss_pred ccCCCCCCCccceeccCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeE
Q 004496 385 SVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRK 464 (748)
Q Consensus 385 ~~p~n~~~~~~~g~~~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~ 464 (748)
.++... .| .|... -.....++.......|++|+++++|++|+++++ .+.+|...+ |
T Consensus 159 il~~~~--rH------iGTD~--l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-------~~~~v~~~~---g---- 214 (486)
T COG2509 159 ILPIYQ--RH------IGTDI--LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-------EVLGVKLTK---G---- 214 (486)
T ss_pred eeeccc--cc------cCccc--hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-------ceEEEEccC---C----
Confidence 443221 11 11111 011233444445678999999999999998876 677787754 3
Q ss_pred EEEEccEEEEcCCCCCCH
Q 004496 465 LQIKAKATISACGSLLTP 482 (748)
Q Consensus 465 ~~i~Ak~VVlAaGai~Sp 482 (748)
.+|.++.||+|-|--+..
T Consensus 215 ~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 215 EEIEADYVVLAPGRSGRD 232 (486)
T ss_pred cEEecCEEEEccCcchHH
Confidence 489999999999964433
No 125
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.29 E-value=6.3e-06 Score=93.13 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=34.2
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
....+|+|||||++|+++|.+|.+.|++|+|+||++.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3468999999999999999999999999999999874
No 126
>PRK08244 hypothetical protein; Provisional
Probab=98.28 E-value=2.2e-06 Score=98.39 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=33.1
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
+|||+|||+|++|+++|..|+++|++|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 58999999999999999999999999999999863
No 127
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.28 E-value=7.5e-06 Score=84.58 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=50.0
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCC-------CC---CCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCC
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNK-------DS---IRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLL 480 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~-------~g---~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~ 480 (748)
....+-+.+...|+.+..+ +|+++.++... +| ..-+++.||.+.- .+.-...+++..+|+|||+ +
T Consensus 245 LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m---~d~~~r~vk~al~V~aAGa-~ 319 (509)
T KOG2853|consen 245 LLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRM---NDALARPVKFALCVNAAGA-W 319 (509)
T ss_pred HHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEec---CchhcCceeEEEEEeccCc-c
Confidence 3344444555668887766 57777776321 11 0112566777664 2234468999999999998 6
Q ss_pred CHHHHHhcCCC
Q 004496 481 TPPLMISSGLE 491 (748)
Q Consensus 481 Sp~LLl~SGi~ 491 (748)
|-++....||+
T Consensus 320 s~QvArlAgIG 330 (509)
T KOG2853|consen 320 SGQVARLAGIG 330 (509)
T ss_pred HHHHHHHhccC
Confidence 99999999998
No 128
>PRK07233 hypothetical protein; Provisional
Probab=98.28 E-value=4.2e-06 Score=94.15 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=33.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
+|||||||++|+++|+.|+++|++|+|||+.+.+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 5899999999999999999999999999999876543
No 129
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=6.8e-06 Score=95.56 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=47.9
Q ss_pred cccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 412 DVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 412 ~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
...+...+.+.|++|+.++.+++|+.++++ +|+||.+.+. .+++...|.||.||||+|++..
T Consensus 129 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g------~v~Gv~~~~~--~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 129 LHTLYQGNLKNGTTFLNEWYAVDLVKNQDG------AVVGVIAICI--ETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHhccCCEEEECcEEEEEEEcCCC------eEEEEEEEEc--CCCcEEEEecCeEEECCCCccc
Confidence 344455566678999999999999876442 9999998652 2346678999999999999864
No 130
>PRK06126 hypothetical protein; Provisional
Probab=98.27 E-value=5.9e-06 Score=96.05 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=33.6
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+.++||+|||+|++|+++|..|+++|++|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 346999999999999999999999999999999875
No 131
>PRK06847 hypothetical protein; Provisional
Probab=98.27 E-value=1.5e-05 Score=88.07 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=33.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
...||+|||+|++|+++|..|++.|++|+|+||...
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357999999999999999999999999999999753
No 132
>PRK06834 hypothetical protein; Provisional
Probab=98.26 E-value=6.6e-06 Score=93.93 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=33.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.++||||||+|++|+++|..|+++|++|+||||.+
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35999999999999999999999999999999976
No 133
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.25 E-value=6.9e-06 Score=91.37 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=32.7
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+||+|||+|++|+++|..|+++|++|+|+||.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 5899999999999999999999999999999986
No 134
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.25 E-value=1.8e-06 Score=95.60 Aligned_cols=33 Identities=39% Similarity=0.522 Sum_probs=31.8
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
||+|||+|++|+++|+.|+++|++|+|+||...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 899999999999999999999999999999974
No 135
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.24 E-value=1e-05 Score=93.91 Aligned_cols=37 Identities=41% Similarity=0.483 Sum_probs=34.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
...+||+|||+|++|+++|..|++.|++|+||||...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4579999999999999999999999999999999863
No 136
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.24 E-value=3.1e-06 Score=94.55 Aligned_cols=34 Identities=38% Similarity=0.671 Sum_probs=32.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+|||+|||+|++|+++|..|+++|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999999999999985
No 137
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.24 E-value=2e-05 Score=89.36 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=32.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
+|+|||+|++|+++|++|+++|++|+|+|+.+...+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 489999999999999999999999999999986544
No 138
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.23 E-value=5.4e-06 Score=94.74 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|||||||+|.+|+.+|..+++.|.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999999999999874
No 139
>PRK11445 putative oxidoreductase; Provisional
Probab=98.22 E-value=1.7e-05 Score=86.93 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=31.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
|||+|||+|++|+++|..|+++ ++|+||||.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 8999999999999999999999 99999999863
No 140
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.19 E-value=5.7e-06 Score=84.68 Aligned_cols=216 Identities=20% Similarity=0.224 Sum_probs=115.4
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHC--CCcEEEEcccCCCCCCCCCCcCCCchhhhhhhCCceecCCCcEEEeccCccc
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGNYFVAEDYSSLEGPSMHELYESGGLLSTLDGKFMVFAGSAVG 310 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lG 310 (748)
....||.||||+|+.|++.|.+|.-+ +++|+||||...+.... .|.
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq-----------------------------Sgh--- 92 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ-----------------------------SGH--- 92 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee-----------------------------ccc---
Confidence 34579999999999999999999876 99999999986432110 000
Q ss_pred chhhhhcccccc-----------CChhHHhhhhhhcCCCCCCchhhHHHHHHhhhhcCcCCCCccCchhHHHHHHHHHHc
Q 004496 311 GGSAVNWSACIE-----------TPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLRKGCENL 379 (748)
Q Consensus 311 Ggs~in~~~~~r-----------~~~~~~~~W~~~~g~~~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~~~~~~l 379 (748)
-+..|+.++|.+ +..-.| ++.++..+|+ +..+.+-|.....+.... +.+.......
T Consensus 93 NSgViHaGIYY~P~SLKAklCV~G~~LlY-~yc~e~~Ipy-----------Kk~GKLIVAt~~~EiprL-d~L~~~g~qN 159 (453)
T KOG2665|consen 93 NSGVIHAGIYYKPGSLKAKLCVEGRELLY-EYCDEKKIPY-----------KKTGKLIVATESEEIPRL-DALMHRGTQN 159 (453)
T ss_pred ccceeeeeeeeCCcccchhhhhccHHHHH-HHhhhcCCCh-----------hhcceEEEEeChhhcchH-HHHHHhhhhc
Confidence 011233333333 222222 2222333332 113444455544443333 2333333333
Q ss_pred CCCcccc-CCCC--CCCccc-eeccCCCCCCcc---ccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEE
Q 004496 380 GFKVESV-ARNT--PEEHYC-GSCNYGCRTGDK---KGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGV 452 (748)
Q Consensus 380 G~~~~~~-p~n~--~~~~~~-g~~~~g~~~g~k---~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV 452 (748)
|++-..+ .... ....+| |.-..-|+..+- .+....|-.+....|.++.++.++.++...+... --.-+
T Consensus 160 ~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~-----~~Ypi 234 (453)
T KOG2665|consen 160 GVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEAT-----FSYPI 234 (453)
T ss_pred CCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCC-----CCCce
Confidence 4432211 1000 011122 111223443221 1233446666677899999999999975443310 11122
Q ss_pred EEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC-----CccccccccCcc
Q 004496 453 TATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN-----PNIGTNLHLHPV 504 (748)
Q Consensus 453 ~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~-----p~VG~nL~~Hp~ 504 (748)
.+.. + +-.+++.+.||-|+| +.|.++-..||... |--|.+|...|.
T Consensus 235 vv~n---g--k~ee~r~~~~vtc~g-l~sdr~aa~sgc~~dPriVpfrG~ylll~~e 285 (453)
T KOG2665|consen 235 VVLN---G--KGEEKRTKNVVTCAG-LQSDRCAALSGCELDPRIVPFRGEYLLLKPE 285 (453)
T ss_pred EEec---C--ccceeEEeEEEEecc-ccHhHHHHHhCCCCCCeeeeccchhhhcChH
Confidence 3332 2 335778888887777 78999999999864 345777776544
No 141
>PRK07190 hypothetical protein; Provisional
Probab=98.18 E-value=1.1e-05 Score=92.08 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=33.5
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
..+||||||+|++|+++|..|+++|.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 358999999999999999999999999999999864
No 142
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.17 E-value=9e-06 Score=90.49 Aligned_cols=36 Identities=42% Similarity=0.517 Sum_probs=33.5
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
...||+|||+|++|+++|..|+++|++|+|+||.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 468999999999999999999999999999999863
No 143
>PRK08013 oxidoreductase; Provisional
Probab=98.16 E-value=5.3e-06 Score=92.54 Aligned_cols=35 Identities=40% Similarity=0.465 Sum_probs=33.2
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
+|||||||+|++|+++|..|+++|++|+||||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 58999999999999999999999999999999864
No 144
>PRK06184 hypothetical protein; Provisional
Probab=98.16 E-value=4.9e-06 Score=95.67 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=33.2
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
++||+|||+|++|+++|..|+++|++|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 59999999999999999999999999999999763
No 145
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.13 E-value=5.7e-06 Score=92.31 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=31.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCC--CcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSG--QKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G--~kVlVLEkG~ 269 (748)
|||+|||+|++|+++|..|+++| ++|+||||.+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 89999999999999999999995 9999999986
No 146
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.11 E-value=1.7e-05 Score=92.28 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=47.7
Q ss_pred cccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCC
Q 004496 412 DVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLT 481 (748)
Q Consensus 412 ~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~S 481 (748)
...+...+.+.|++|++++.|++|+.+++ +|+||.+.+.. +++...|.||.||||+|++..
T Consensus 122 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~g-------~v~Ga~~~~~~--~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 122 LHTLYQQNLKADTSFFNEYFALDLLMEDG-------ECRGVIAYCLE--TGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHHhCCCEEEeccEEEEEEeeCC-------EEEEEEEEEcC--CCcEEEEEeCeEEECCCCccc
Confidence 34455556677899999999999987644 99999986522 346678999999999999864
No 147
>PRK07588 hypothetical protein; Provisional
Probab=98.09 E-value=2.5e-05 Score=86.81 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=31.0
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
||+|||||++|+++|..|+++|++|+|+||.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 89999999999999999999999999999985
No 148
>PLN02612 phytoene desaturase
Probab=98.08 E-value=3.3e-05 Score=89.80 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=34.4
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
..||+|||+|.+|+++|++|+++|++|+|+|+.....+
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 57899999999999999999999999999999875433
No 149
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.08 E-value=3.7e-06 Score=68.45 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=27.9
Q ss_pred EECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 241 VVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 241 IVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
|||||++|+++|++|+++|++|+|+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999975
No 150
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=5e-06 Score=91.47 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=31.3
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.+|||||||+|-+|+-||...|+.|.++++|--.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 3599999999999999999999999999999755
No 151
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.05 E-value=7.8e-05 Score=84.39 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=33.7
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
..+||+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999997643
No 152
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.03 E-value=4.4e-05 Score=85.97 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=34.7
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCc-EEEEcccCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGNY 270 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~~ 270 (748)
....+||+|||+|.+|+++|++|.++|.. ++|+||...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence 34579999999999999999999999998 999999863
No 153
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.01 E-value=4.1e-05 Score=79.19 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCH
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTP 482 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp 482 (748)
..++.|..++.+-+|.+..+.++ +|+.|.++. ....-++|+.+|+|+|++-|.
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~~~-------~v~~i~trn-----~~diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCKGG-------RVTEIYTRN-----HADIPLRADFYVLASGSFFSK 319 (421)
T ss_pred HHHHcCceEecCCceeeeeeeCC-------eEEEEEecc-----cccCCCChhHeeeeccccccc
Confidence 34567899999999999888776 899988864 245688999999999998554
No 154
>PRK12831 putative oxidoreductase; Provisional
Probab=98.01 E-value=7.9e-05 Score=84.60 Aligned_cols=37 Identities=32% Similarity=0.328 Sum_probs=33.9
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
....||+|||||++|+++|.+|++.|++|+|+|+...
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3568999999999999999999999999999998764
No 155
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.00 E-value=9.9e-05 Score=91.30 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=48.2
Q ss_pred chHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC
Q 004496 415 WLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE 491 (748)
Q Consensus 415 ~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~ 491 (748)
++....+.|++|++++.|+++. .++ ++.+|++... .+...++.++.|+++.|..-+..|+...|..
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~-g~~-------~v~~V~l~~~---~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATE-GGK-------RVSGVAVARN---GGAGQRLEADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEe-cCC-------cEEEEEEEec---CCceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence 3444567789999999999973 222 6778887631 1234578999999999988778888877754
No 156
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.97 E-value=7.6e-06 Score=82.90 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=44.8
Q ss_pred cchHHHHhCC-CEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCC
Q 004496 414 TWLVDAVDNG-AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGL 490 (748)
Q Consensus 414 ~~L~~A~~~G-~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi 490 (748)
..+..|.++| ++++.+ +|.++..+.. |+.+|.... ..+......+.++|||+|. ||++||..-+|
T Consensus 152 ~i~sea~k~~~V~lv~G-kv~ev~dEk~-------r~n~v~~ae---~~~ti~~~d~~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 152 FILSEAEKRGGVKLVFG-KVKEVSDEKH-------RINSVPKAE---AEDTIIKADVHKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHHhhcCeEEEEe-eeEEeecccc-------cccccchhh---hcCceEEeeeeEEEEecCC-Cchhhcccccc
Confidence 4577788887 999988 4777642322 777776542 1122345567899999998 69999888655
No 157
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.96 E-value=8.2e-06 Score=92.06 Aligned_cols=38 Identities=34% Similarity=0.474 Sum_probs=34.8
Q ss_pred CcCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 232 LFEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 232 ~~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
....+|||||||+|++|+++|..||++|++|+||||..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45567999999999999999999999999999999974
No 158
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.95 E-value=6.3e-05 Score=85.66 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.4
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
+|+|||+|++|+++|++|+++|++|+|+|+.+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 48999999999999999999999999999987654
No 159
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.93 E-value=0.00016 Score=83.41 Aligned_cols=58 Identities=9% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhc
Q 004496 422 NGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISS 488 (748)
Q Consensus 422 ~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~S 488 (748)
.|++|+.++.|+++.-+++ ++++|.+.+.. .++..++.++.|++|.|..-++.++..+
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-------~v~~v~~~~~~--~g~~~~i~~D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-------KVTGLTYKDRT--TGEEHHLELEGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-------cEEEEEEEECC--CCcEEEEEcCEEEEeECCccCchHHhhh
Confidence 4899999999999853322 78888887522 2345689999999999987666776554
No 160
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00011 Score=79.88 Aligned_cols=41 Identities=32% Similarity=0.418 Sum_probs=36.9
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
...+||||||+|.+|+++|+.|.++|++|+|||..+.+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 35799999999999999999999999999999998876543
No 161
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.92 E-value=8e-05 Score=80.69 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=45.6
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHH
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLM 485 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LL 485 (748)
....++..+.+.|++|+.+++|+.|..+++ ++++|.+.. + +++||.||+|+|+ +++.|+
T Consensus 139 l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-------~~~~v~~~~---g-----~~~a~~vV~a~G~-~~~~l~ 197 (337)
T TIGR02352 139 LLKALEKALEKLGVEIIEHTEVQHIEIRGE-------KVTAIVTPS---G-----DVQADQVVLAAGA-WAGELL 197 (337)
T ss_pred HHHHHHHHHHHcCCEEEccceEEEEEeeCC-------EEEEEEcCC---C-----EEECCEEEEcCCh-hhhhcc
Confidence 445667778888999999999999876543 778886532 2 6889999999997 566654
No 162
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.91 E-value=8.3e-06 Score=92.33 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=32.4
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+|||||||||++|..+|.+|++.|++|+|+||+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 6999999999999999999999999999999964
No 163
>PRK06116 glutathione reductase; Validated
Probab=97.90 E-value=9.4e-06 Score=92.01 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=32.6
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.+|||||||+|++|+.+|.+|++.|++|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999986
No 164
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.90 E-value=0.00022 Score=82.19 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhc
Q 004496 422 NGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISS 488 (748)
Q Consensus 422 ~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~S 488 (748)
.|++|++++.|+++.-+++ ++++|.+.+.. .++..++.++.||+|.|..-+..+|...
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-------~v~~v~~~~~~--~~~~~~i~~D~vi~a~G~~Pn~~~l~~~ 458 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-------KVTGIRYQDRN--SGEEKQLDLDGVFVQIGLVPNTEWLKDA 458 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-------EEEEEEEEECC--CCcEEEEEcCEEEEEeCCcCCchHHhhh
Confidence 5899999999999743322 78888886521 2234578999999999987666666543
No 165
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.89 E-value=0.00037 Score=79.41 Aligned_cols=38 Identities=42% Similarity=0.517 Sum_probs=34.7
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
....||+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 34679999999999999999999999999999998754
No 166
>PLN02487 zeta-carotene desaturase
Probab=97.89 E-value=0.00016 Score=83.54 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.9
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
..+|+|||+|++|+++|++|+++|++|+|+|+.+...
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 3589999999999999999999999999999987654
No 167
>PRK06370 mercuric reductase; Validated
Probab=97.89 E-value=1.1e-05 Score=91.91 Aligned_cols=37 Identities=35% Similarity=0.479 Sum_probs=34.1
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
++.+|||||||||++|..+|.+|++.|++|+|+||+.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3457999999999999999999999999999999874
No 168
>PTZ00058 glutathione reductase; Provisional
Probab=97.86 E-value=1.2e-05 Score=92.79 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=33.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|||||||+|++|..+|.++++.|++|+|+||+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 57999999999999999999999999999999863
No 169
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.84 E-value=1.2e-05 Score=89.25 Aligned_cols=32 Identities=41% Similarity=0.684 Sum_probs=31.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
|||||||+|++|+++|+.|+++|++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999997
No 170
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=1.4e-05 Score=91.28 Aligned_cols=36 Identities=39% Similarity=0.575 Sum_probs=33.4
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
...|||||||||++|+.+|.+|++.|++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 357999999999999999999999999999999863
No 171
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.83 E-value=1.5e-05 Score=84.44 Aligned_cols=34 Identities=53% Similarity=0.743 Sum_probs=32.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
|||+|||+|++|+++|..|++.|.+|+||||...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 7999999999999999999999999999999874
No 172
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.82 E-value=2.1e-05 Score=88.92 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=37.2
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGS 478 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGa 478 (748)
.-++..|.++|++++.++ |+++..++++ .+++|+..+ + .+|+||-||=|+|-
T Consensus 158 ~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g------~i~~v~~~~---g----~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEGT-VVDVELDEDG------RITAVRLDD---G----RTIEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-TTS------EEEEEEETT---S----EEEEESEEEE-SGG
T ss_pred HHHHHHHhcCCCEEEeCE-EEEEEEcCCC------CEEEEEECC---C----CEEEEeEEEECCCc
Confidence 345566888999999985 7787777652 888888754 3 37899999999995
No 173
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.82 E-value=1.5e-05 Score=90.26 Aligned_cols=33 Identities=39% Similarity=0.609 Sum_probs=32.0
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
+|||||||+|++|..+|.+|++.|++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 699999999999999999999999999999985
No 174
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=2e-05 Score=81.37 Aligned_cols=40 Identities=40% Similarity=0.635 Sum_probs=36.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAEDY 276 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~~ 276 (748)
||++|||||.+|+++|..|++.|++||||||-++..+..+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 8999999999999999999999999999999988776544
No 175
>PRK09126 hypothetical protein; Provisional
Probab=97.78 E-value=2e-05 Score=87.64 Aligned_cols=35 Identities=43% Similarity=0.557 Sum_probs=33.5
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
+|||||||+|++|+++|..|+++|++|+|+||...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 69999999999999999999999999999999874
No 176
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.76 E-value=2.1e-05 Score=87.96 Aligned_cols=36 Identities=47% Similarity=0.574 Sum_probs=33.9
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..+||+||||+|++|-++|.++|+.|+||+++|++.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 357999999999999999999999999999999985
No 177
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.74 E-value=2.4e-05 Score=89.05 Aligned_cols=35 Identities=49% Similarity=0.551 Sum_probs=32.8
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|||||||+|++|..+|.+|++.|++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 36999999999999999999999999999999863
No 178
>PLN02546 glutathione reductase
Probab=97.74 E-value=2.3e-05 Score=90.47 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=32.1
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEK 267 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEk 267 (748)
..+|||||||+|++|..+|.+|++.|++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3579999999999999999999999999999996
No 179
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=2.4e-05 Score=88.97 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=31.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
+|||||||+|++|+++|.+|++.|++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 599999999999999999999999999999974
No 180
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.72 E-value=0.00044 Score=85.39 Aligned_cols=37 Identities=35% Similarity=0.296 Sum_probs=34.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...+|+|||||++|+++|..|++.|++|+|+|+....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998754
No 181
>PLN02463 lycopene beta cyclase
Probab=97.72 E-value=3.6e-05 Score=86.52 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=33.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
...|||||||+|++|+++|..|+++|++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 346999999999999999999999999999999864
No 182
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.70 E-value=0.00094 Score=75.90 Aligned_cols=37 Identities=32% Similarity=0.369 Sum_probs=33.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...+|+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3579999999999999999999999999999998754
No 183
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=3.2e-05 Score=88.04 Aligned_cols=35 Identities=46% Similarity=0.635 Sum_probs=33.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|||||||+|++|+.+|.+|++.|++|+|+||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999975
No 184
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.69 E-value=3.1e-05 Score=86.09 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=33.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|||||||+|++|+++|..|+++|++|+|||+..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 46999999999999999999999999999999975
No 185
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.69 E-value=0.00027 Score=78.48 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.2
Q ss_pred EEEECCCchHHHHHHHHHHCC--CcEEEEcccCCCCC
Q 004496 239 VVVVGSGCGGGVAAAVLASSG--QKVLVLEKGNYFVA 273 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G--~kVlVLEkG~~~~~ 273 (748)
|+|||||++|+++|++|.+++ ..|+|+|++++..+
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 799999999999999999999 99999999976543
No 186
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.68 E-value=0.00029 Score=80.17 Aligned_cols=32 Identities=41% Similarity=0.610 Sum_probs=30.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|+||||+|++|+.+|..|++.|++|+|+||+.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999874
No 187
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.68 E-value=3e-05 Score=88.21 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=31.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|||||||||++|..+|.+|++.|++|+|+||+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999999999999975
No 188
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.68 E-value=3.5e-05 Score=87.14 Aligned_cols=35 Identities=34% Similarity=0.537 Sum_probs=33.1
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
+|||||||||++|+.+|.+|+++|++|+|+|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 69999999999999999999999999999999753
No 189
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.68 E-value=3.2e-05 Score=85.82 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=33.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..|||||||+|++|+++|..|+++|++|+||||..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 46899999999999999999999999999999975
No 190
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.66 E-value=3.5e-05 Score=85.81 Aligned_cols=33 Identities=42% Similarity=0.590 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+||||||+|++|+++|..||++|++|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999999999999864
No 191
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.65 E-value=4.4e-05 Score=83.63 Aligned_cols=37 Identities=41% Similarity=0.563 Sum_probs=33.9
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
+||+|||||++|+++|++|++.|.+|+|||+.....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 7999999999999999999999999999999765544
No 192
>PRK14694 putative mercuric reductase; Provisional
Probab=97.63 E-value=4.4e-05 Score=86.94 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=33.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..|||||||+|++|.++|.+|++.|++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 47999999999999999999999999999999974
No 193
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.63 E-value=4.8e-05 Score=84.38 Aligned_cols=34 Identities=41% Similarity=0.626 Sum_probs=32.3
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+|||+|||+|++|+++|..|++.|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 5899999999999999999999999999999874
No 194
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00011 Score=79.35 Aligned_cols=35 Identities=40% Similarity=0.546 Sum_probs=31.9
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
+..|||||||+|-+||-+|...|+-|.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45799999999999999999999999999998765
No 195
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.61 E-value=0.00045 Score=79.42 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=28.3
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.|+|||||++|+++|+.|.+.|+.|+++||.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 489999999999999999999999999999875
No 196
>PRK13748 putative mercuric reductase; Provisional
Probab=97.61 E-value=4.4e-05 Score=89.11 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=32.6
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.+|||||||+|++|+.+|.+|++.|++|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3699999999999999999999999999999997
No 197
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.61 E-value=4.8e-05 Score=86.75 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=31.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHC-CCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~-G~kVlVLEkG 268 (748)
.+|||||||+|++|..+|.++++. |+||+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 9999999985
No 198
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.61 E-value=5e-05 Score=85.80 Aligned_cols=35 Identities=40% Similarity=0.589 Sum_probs=33.2
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
+|||||||||++|+.+|.+|++.|++|+|+||++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 69999999999999999999999999999999863
No 199
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.60 E-value=6.1e-05 Score=85.84 Aligned_cols=38 Identities=37% Similarity=0.437 Sum_probs=34.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
+.+|||||||+|++|..+|.+|++.|++|+|+|+.+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 34699999999999999999999999999999987533
No 200
>PRK07045 putative monooxygenase; Reviewed
Probab=97.60 E-value=5.6e-05 Score=83.93 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=33.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.++||+|||+|++|+++|..|+++|++|+|+||.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 469999999999999999999999999999999874
No 201
>PRK09897 hypothetical protein; Provisional
Probab=97.59 E-value=0.00085 Score=76.93 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.0
Q ss_pred eeEEEECCCchHHHHHHHHHHCC--CcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSG--QKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G--~kVlVLEkG~~ 270 (748)
.+|+|||+|++|+.+|.+|++.+ ++|+|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 47999999999999999999864 58999999764
No 202
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.59 E-value=5.5e-05 Score=88.69 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=32.4
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.+|||||||+|++|..+|.++++.|+||+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4799999999999999999999999999999975
No 203
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.59 E-value=5.1e-05 Score=84.81 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=32.3
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
..+||+|||+|++|+++|..|+++|++|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3689999999999999999999999999999996
No 204
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.59 E-value=6e-05 Score=85.73 Aligned_cols=37 Identities=38% Similarity=0.481 Sum_probs=34.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
..|||||||+|++|+.+|.+|++.|++|+|+||+..+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 4699999999999999999999999999999997543
No 205
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.58 E-value=5.9e-05 Score=83.82 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=32.7
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+||+|||+|++|+++|..|+++|++|+|+||.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 5899999999999999999999999999999986
No 206
>PLN02507 glutathione reductase
Probab=97.58 E-value=5.9e-05 Score=86.43 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=32.4
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEK 267 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEk 267 (748)
..+|||||||+|++|..+|.+|++.|++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4579999999999999999999999999999997
No 207
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=7.4e-05 Score=79.49 Aligned_cols=35 Identities=43% Similarity=0.606 Sum_probs=31.7
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
..|||||||||++|++||.+++++|++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 469999999999999999999999999 88888764
No 208
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=7.4e-05 Score=84.74 Aligned_cols=41 Identities=37% Similarity=0.402 Sum_probs=36.7
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
....+|||||||++|++||..|.+.|++|+|||+-+...+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 34689999999999999999999999999999999876543
No 209
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.51 E-value=7.4e-05 Score=82.93 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=30.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
||||||+|++|+++|+.|+++|++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 89999999999999999999999999999985
No 210
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.51 E-value=7e-05 Score=83.24 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=32.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHC---CCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASS---GQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~---G~kVlVLEkG 268 (748)
..+||+|||+|++|+++|+.|+++ |++|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 469999999999999999999998 9999999995
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.50 E-value=8.6e-05 Score=86.29 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=33.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..|||||||||++|+.+|.+|+++|++|+|+|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 35999999999999999999999999999999975
No 212
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.50 E-value=8e-05 Score=82.42 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=31.7
Q ss_pred eEEEECCCchHHHHHHHHHHCC-CcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~~ 270 (748)
||||||+|++|+++|..|+++| ++|+|+||...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 8999999999999999999999 99999999864
No 213
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.48 E-value=9.3e-05 Score=78.71 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=31.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|||||||||++|+.+|..|++.|++|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999999999999885
No 214
>PLN02576 protoporphyrinogen oxidase
Probab=97.47 E-value=0.00012 Score=84.25 Aligned_cols=40 Identities=43% Similarity=0.453 Sum_probs=36.0
Q ss_pred CcceeEEEECCCchHHHHHHHHHHC-CCcEEEEcccCCCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEKGNYFVA 273 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~-G~kVlVLEkG~~~~~ 273 (748)
...+||||||||++|+++|++|+++ |++|+|||+.+.+.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 3467999999999999999999999 999999999986654
No 215
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.47 E-value=0.0013 Score=77.94 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=34.3
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4688999999999999999999999999999999754
No 216
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=9.5e-05 Score=84.09 Aligned_cols=34 Identities=50% Similarity=0.670 Sum_probs=32.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.+|||||||||++|+.+|.+|++.|++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4599999999999999999999999999999994
No 217
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.46 E-value=9.5e-05 Score=81.71 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+||+|||+|++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 218
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.46 E-value=9.5e-05 Score=82.10 Aligned_cols=33 Identities=39% Similarity=0.540 Sum_probs=32.0
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.+||+|||||++|+++|..|+++|++|+||||.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 589999999999999999999999999999997
No 219
>PTZ00367 squalene epoxidase; Provisional
Probab=97.45 E-value=0.0001 Score=85.15 Aligned_cols=35 Identities=40% Similarity=0.631 Sum_probs=33.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|||||||+|++|+++|..|+++|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 47999999999999999999999999999999975
No 220
>PLN02268 probable polyamine oxidase
Probab=97.45 E-value=0.00012 Score=82.77 Aligned_cols=37 Identities=32% Similarity=0.437 Sum_probs=34.2
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
+|||||+|++|+++|++|.++|++|+|||+.+.+.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 7999999999999999999999999999999876543
No 221
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.00011 Score=83.82 Aligned_cols=33 Identities=48% Similarity=0.587 Sum_probs=31.8
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEK 267 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEk 267 (748)
.+||+||||+|++|+.+|.+|++.|++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 222
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.43 E-value=9e-05 Score=83.68 Aligned_cols=33 Identities=42% Similarity=0.526 Sum_probs=31.3
Q ss_pred eeEEEECCCchHHHHHHHHHH----CCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLAS----SGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe----~G~kVlVLEkG~ 269 (748)
|||||||+|++|+++|..|++ +|++|+||||.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999999 899999999964
No 223
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.42 E-value=0.00011 Score=84.14 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=32.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
..|||||||+|++|+.+|.+|++.|++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 4699999999999999999999999999999973
No 224
>PRK07236 hypothetical protein; Provisional
Probab=97.42 E-value=0.00013 Score=80.95 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=33.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
...||||||||++|+++|..|+++|++|+|+||.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35899999999999999999999999999999985
No 225
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.41 E-value=0.00014 Score=82.46 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=32.7
Q ss_pred eEEEECCCchHHHHHHHHHHCC--CcEEEEcccCCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSG--QKVLVLEKGNYFVA 273 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G--~kVlVLEkG~~~~~ 273 (748)
+|||||||++|+++|++|+++| ++|+|+|+.+...+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 6899999999999999999988 89999999876644
No 226
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.41 E-value=0.00011 Score=81.24 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=30.7
Q ss_pred eEEEECCCchHHHHHHHH--HHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVL--ASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~L--Ae~G~kVlVLEkG~~ 270 (748)
||||||+|++|+++|++| ++.|++|+|||+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 899999999999999999 777999999999864
No 227
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.40 E-value=0.0032 Score=71.28 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC
Q 004496 417 VDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE 491 (748)
Q Consensus 417 ~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~ 491 (748)
....+.|++|+++++|++|. .++ ++..|.... + ++.++.||+|+|...+..+|..+|+.
T Consensus 199 ~~l~~~gI~v~~~~~v~~i~-~~~-------~~~~v~~~~---~-----~i~~d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 199 EELRENGVELHLNEFVKSLI-GED-------KVEGVVTDK---G-----EYEADVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHCCCEEEcCCEEEEEe-cCC-------cEEEEEeCC---C-----EEEcCEEEECcCCCcCHHHHHhcCcc
Confidence 34456789999999999983 222 444554321 1 58999999999977667789989886
No 228
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.39 E-value=0.00015 Score=79.91 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=30.7
Q ss_pred eEEEECCCchHHHHHHHHHHC--CCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~ 269 (748)
||||||+|++|+++|++|+++ |++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999997 99999999986
No 229
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.33 E-value=0.0093 Score=66.45 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=31.7
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCC--cEEEEcccCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQ--KVLVLEKGNYF 271 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~--kVlVLEkG~~~ 271 (748)
..+|||||+|++|+.+|..|++.|. +|+|+++..+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 3579999999999999999999876 79999998653
No 230
>PRK06753 hypothetical protein; Provisional
Probab=97.33 E-value=0.00019 Score=79.24 Aligned_cols=33 Identities=39% Similarity=0.677 Sum_probs=31.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
||+|||||++|+++|..|+++|++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999999874
No 231
>PRK07538 hypothetical protein; Provisional
Probab=97.32 E-value=0.00031 Score=78.72 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=31.5
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
||+|||+|++|+++|..|+++|++|+|+||.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 899999999999999999999999999999864
No 232
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.30 E-value=0.00021 Score=81.24 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=33.5
Q ss_pred eeEEEECCCchHHHHHHHHHHC----CCcEEEEcccCCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASS----GQKVLVLEKGNYFV 272 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~----G~kVlVLEkG~~~~ 272 (748)
.||||||||++|+++|++|+++ |++|+|+|+.+.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 6899999999999999999999 99999999988654
No 233
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.28 E-value=0.00023 Score=82.86 Aligned_cols=35 Identities=37% Similarity=0.468 Sum_probs=33.5
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.++||+|||+|++|+++|..|++.|++|+|+||..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 57999999999999999999999999999999986
No 234
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.27 E-value=0.00029 Score=78.01 Aligned_cols=59 Identities=12% Similarity=-0.046 Sum_probs=39.6
Q ss_pred ccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHH
Q 004496 411 TDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMI 486 (748)
Q Consensus 411 ~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl 486 (748)
....+...+.+ |++|+++++|++|..+++ + ..|++.+ + ..++|+.||+|+|+ +++.|+.
T Consensus 137 ~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-------~-~~v~t~~---g----~~~~a~~vV~a~G~-~~~~l~~ 195 (381)
T TIGR03197 137 LCRALLAHAGI-RLTLHFNTEITSLERDGE-------G-WQLLDAN---G----EVIAASVVVLANGA-QAGQLAQ 195 (381)
T ss_pred HHHHHHhccCC-CcEEEeCCEEEEEEEcCC-------e-EEEEeCC---C----CEEEcCEEEEcCCc-ccccccc
Confidence 34445555556 999999999999865433 3 3344322 2 24789999999997 4666543
No 235
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00026 Score=78.47 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=34.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
-|+|+|+|.+|+++|++||++|++|+|+|++++..+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 4899999999999999999999999999999977653
No 236
>PRK06996 hypothetical protein; Provisional
Probab=97.23 E-value=0.00025 Score=79.00 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.1
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCC----CcEEEEcccC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSG----QKVLVLEKGN 269 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G----~kVlVLEkG~ 269 (748)
...++||+|||+|++|+++|..|+++| ++|+|+|+..
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 445799999999999999999999987 5799999975
No 237
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.20 E-value=0.00039 Score=69.28 Aligned_cols=32 Identities=50% Similarity=0.702 Sum_probs=30.5
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
||||||||++|+.+|.+|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 89999999999999999999999999998875
No 238
>PRK05868 hypothetical protein; Validated
Probab=97.20 E-value=0.00049 Score=75.95 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=31.5
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
||+|||+|++|+++|..|+++|++|+|+||.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 899999999999999999999999999999864
No 239
>PRK07846 mycothione reductase; Reviewed
Probab=97.19 E-value=0.00027 Score=80.02 Aligned_cols=32 Identities=22% Similarity=0.686 Sum_probs=28.0
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC
Confidence 48999999999999888763 599999999864
No 240
>PRK10262 thioredoxin reductase; Provisional
Probab=97.18 E-value=0.00033 Score=75.70 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.5
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
+..+||||||+|++|+.+|..|++.|++|+|+|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 45799999999999999999999999999999965
No 241
>PLN02568 polyamine oxidase
Probab=97.16 E-value=0.0004 Score=80.07 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=34.7
Q ss_pred cceeEEEECCCchHHHHHHHHHHCC-----CcEEEEcccCCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSG-----QKVLVLEKGNYFVA 273 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G-----~kVlVLEkG~~~~~ 273 (748)
...||||||+|++|+++|++|+++| ++|+|+|+.....+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 4579999999999999999999887 89999999886543
No 242
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.15 E-value=0.0003 Score=79.80 Aligned_cols=32 Identities=22% Similarity=0.655 Sum_probs=27.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+||+||||+|++|..+|.+ .+|+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 5999999999999888654 4699999999864
No 243
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.15 E-value=0.00037 Score=76.78 Aligned_cols=34 Identities=35% Similarity=0.342 Sum_probs=32.0
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-||+|||||.+|+.+|+.||+.|++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5999999999999999999999999999998764
No 244
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.13 E-value=0.00041 Score=78.84 Aligned_cols=32 Identities=34% Similarity=0.602 Sum_probs=30.7
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+|||||+|++|..+|.+|++.|++|+|+||+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 78999999999999999999999999999975
No 245
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.11 E-value=0.00039 Score=81.91 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.7
Q ss_pred cCcceeEEEECCCchHHHHHHHHHH-CCCcEEEEcccC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLAS-SGQKVLVLEKGN 269 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe-~G~kVlVLEkG~ 269 (748)
+..++||+|||+|++|+++|..|++ .|.+|+||||.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 3457999999999999999999999 599999999975
No 246
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.10 E-value=0.00048 Score=80.49 Aligned_cols=37 Identities=41% Similarity=0.460 Sum_probs=34.3
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.....+|+|||||++|+++|..|+++|++|+|+||..
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4567999999999999999999999999999999974
No 247
>PRK14727 putative mercuric reductase; Provisional
Probab=97.10 E-value=0.0005 Score=78.60 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=33.6
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+..||+||||+|++|..+|.+|++.|.+|+|+|++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 357999999999999999999999999999999974
No 248
>PLN02676 polyamine oxidase
Probab=97.08 E-value=0.00056 Score=78.14 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=35.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccCCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGNYFVA 273 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~~~~~ 273 (748)
..+||||||+|++|+++|++|+++|. +|+|||+.+...+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 46899999999999999999999998 5999999886544
No 249
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.08 E-value=0.00044 Score=79.02 Aligned_cols=33 Identities=39% Similarity=0.593 Sum_probs=31.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
+||+||||+|++|..+|.+|++.|++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 599999999999999999999999999999974
No 250
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.06 E-value=0.0008 Score=75.08 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-+|+|||||++|+++|..|+++|++|+|+||.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4689999999999999999999999999999764
No 251
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.04 E-value=0.00055 Score=77.93 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=32.0
Q ss_pred eEEEECCCchHHHHHHHHHHC------CCcEEEEcccCCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASS------GQKVLVLEKGNYFVA 273 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~------G~kVlVLEkG~~~~~ 273 (748)
+|||||||++|+++|++|+++ |++|+|||+.+...+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 699999999999999999986 379999999987654
No 252
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.97 E-value=0.025 Score=62.95 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=41.0
Q ss_pred HhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEc-cEEEEcCCCC
Q 004496 420 VDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSL 479 (748)
Q Consensus 420 ~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~A-k~VVlAaGai 479 (748)
..+||++..+++|+.|.++..+ ..++|+++++.. +|..+...+.. |.|++.-|++
T Consensus 218 ~~~GV~F~~~t~V~di~~~~~~---~~~~~~~i~~~~--~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 218 KSQGVDFRFNTKVTDIDFDITG---DKKTATRIHIEQ--DGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHCCCEEECCCEEEEEEEEccC---CCeeEEEEEEEc--CCCeeEEEeCCCCEEEEECCcc
Confidence 4689999999999999998653 234788888875 34344455555 8999999986
No 253
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.93 E-value=0.00076 Score=72.56 Aligned_cols=34 Identities=38% Similarity=0.489 Sum_probs=31.5
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+-+|||||||++|+++|..|+++|++|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3589999999999999999999999999999954
No 254
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.92 E-value=0.00085 Score=81.64 Aligned_cols=37 Identities=35% Similarity=0.392 Sum_probs=34.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...||+|||||++|+++|++|++.|++|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4589999999999999999999999999999998653
No 255
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.90 E-value=0.00084 Score=74.41 Aligned_cols=34 Identities=35% Similarity=0.412 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.||+|||||.+|+.+|..||+.|++|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4899999999999999999999999999998753
No 256
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.84 E-value=0.0012 Score=73.47 Aligned_cols=43 Identities=33% Similarity=0.621 Sum_probs=33.4
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAED 275 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~ 275 (748)
|+.+|||||+|.|..-+.+|..|+.+|+|||.||+.+++....
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 3468999999999999999999999999999999999987653
No 257
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.81 E-value=0.0012 Score=71.77 Aligned_cols=38 Identities=37% Similarity=0.449 Sum_probs=34.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
.+-+++|||||++|++||..||+.|++|.++||.+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 35678999999999999999999999999999998643
No 258
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.80 E-value=0.011 Score=56.74 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=26.6
Q ss_pred EEECCCchHHHHHHHHHHC-----CCcEEEEcccC
Q 004496 240 VVVGSGCGGGVAAAVLASS-----GQKVLVLEKGN 269 (748)
Q Consensus 240 VIVGsG~aG~~aA~~LAe~-----G~kVlVLEkG~ 269 (748)
+|||+|++|++++.+|.+. ..+|.|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999987 46799999965
No 259
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.80 E-value=0.0018 Score=72.54 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=30.4
Q ss_pred eEEEECCCchHHHHHHHHHHCC-CcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~~ 270 (748)
.|+|||+|++|+++|..|+++| .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 5899999999999999999998 59999999764
No 260
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.70 E-value=0.0074 Score=65.63 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=27.3
Q ss_pred ceeEEEECCCchHHHHHHHHHHCC-CcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~~ 270 (748)
.||+|+||.|++++++|..|.+.+ .+++.|||-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 499999999999999999999885 99999998763
No 261
>PLN02529 lysine-specific histone demethylase 1
Probab=96.70 E-value=0.0017 Score=76.84 Aligned_cols=39 Identities=41% Similarity=0.423 Sum_probs=34.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
...||+|||+|++|+.+|..|+++|++|+|+|+.+...+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 457999999999999999999999999999999875443
No 262
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.69 E-value=0.0025 Score=53.59 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=31.2
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
++|||||..|+-+|..|++.|.+|.|+|+.+.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 799999999999999999999999999999853
No 263
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.69 E-value=0.0018 Score=77.21 Aligned_cols=39 Identities=46% Similarity=0.435 Sum_probs=35.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
...+|||||||++|+++|+.|++.|++|+|+|+.....+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 468999999999999999999999999999999876543
No 264
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.69 E-value=0.0026 Score=66.61 Aligned_cols=35 Identities=37% Similarity=0.452 Sum_probs=32.9
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
..+||++|||+|.+|..+|.+.|+.|.||.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 34899999999999999999999999999999986
No 265
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.62 E-value=0.0017 Score=72.47 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=33.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
..-+|+|||+|++|+++|+.|.+.|+.|+|+||.+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 3578999999999999999999999999999999753
No 266
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.60 E-value=0.0019 Score=79.07 Aligned_cols=38 Identities=37% Similarity=0.385 Sum_probs=34.3
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
...+|+|||||++|+++|+.|+++|++|+|+|+.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence 36789999999999999999999999999999986443
No 267
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.50 E-value=0.0028 Score=75.32 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=34.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999999999999999998654
No 268
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0024 Score=66.47 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=32.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
..+||.||||+|.+|+++|.+.|.-|.+|.+||-=
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 45799999999999999999999999999999853
No 269
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.45 E-value=0.0027 Score=77.05 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=33.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
..-+|+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4568999999999999999999999999999998654
No 270
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.42 E-value=0.0033 Score=75.99 Aligned_cols=36 Identities=36% Similarity=0.298 Sum_probs=33.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
...||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 467999999999999999999999999999999653
No 271
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.41 E-value=0.0038 Score=66.22 Aligned_cols=37 Identities=43% Similarity=0.496 Sum_probs=34.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
.+|||||||+|++|-++|.+.|+.|++...+|+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 4899999999999999999999999999999996543
No 272
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.33 E-value=0.0016 Score=63.32 Aligned_cols=34 Identities=41% Similarity=0.582 Sum_probs=30.9
Q ss_pred ceeEEEECCCchHHHHHHHHHHC--CCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~ 269 (748)
+.||||||+|.+|+++||..+++ .++|.+||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 68999999999999999999965 78999999864
No 273
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.21 E-value=0.006 Score=69.23 Aligned_cols=36 Identities=33% Similarity=0.332 Sum_probs=32.9
Q ss_pred ceeEEEECCCchHHHHHHHHHH--CCCcEEEEcccCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLAS--SGQKVLVLEKGNYF 271 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe--~G~kVlVLEkG~~~ 271 (748)
...|+|||||++|+.+|..|++ .|++|+|+|+.+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 5689999999999999999997 69999999999854
No 274
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.19 E-value=0.066 Score=65.21 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE 491 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~ 491 (748)
...++|++|++++.|++|.-++. .....|.+.+ + ..+.++.||+|+|.--+..|+..+|+.
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~------~~~~~v~~~d---G----~~i~~D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGV------EARKTMRFAD---G----SELEVDFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCC------CceEEEEECC---C----CEEEcCEEEECCCcccCchHHhhcCcc
Confidence 34567999999999999854322 1445565543 2 268899999999987777788788885
No 275
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.16 E-value=0.0043 Score=74.94 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.5
Q ss_pred eEEEECCCchHHHHHHHHHHC--CCcEEEEcccCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGNYF 271 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~~~ 271 (748)
+|+|||||++|+++|..|++. |++|+|+||....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 689999999999999999998 8999999998754
No 276
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.13 E-value=0.079 Score=64.33 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC
Q 004496 418 DAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN 492 (748)
Q Consensus 418 ~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~ 492 (748)
...+.|++|++++.|++|.- ++ ++.+|.+.+ + .++.+|.||+|+|.--+..|+..+|+..
T Consensus 191 ~l~~~GV~v~~~~~v~~i~~-~~-------~~~~v~~~d---G----~~i~~D~Vi~a~G~~Pn~~la~~~gl~~ 250 (785)
T TIGR02374 191 ELEQKGLTFLLEKDTVEIVG-AT-------KADRIRFKD---G----SSLEADLIVMAAGIRPNDELAVSAGIKV 250 (785)
T ss_pred HHHHcCCEEEeCCceEEEEc-CC-------ceEEEEECC---C----CEEEcCEEEECCCCCcCcHHHHhcCCcc
Confidence 34567999999999999742 22 566777654 3 2688999999999876667777788754
No 277
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.13 E-value=0.0069 Score=71.86 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=34.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...+|+|||+|++|+++|..|++.|++|+|+|+....
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998754
No 278
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.10 E-value=0.005 Score=74.00 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=32.3
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
....|+|||+|++|+++|++|++.|++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45789999999999999999999999999999853
No 279
>PLN03000 amine oxidase
Probab=96.07 E-value=0.0061 Score=72.84 Aligned_cols=39 Identities=41% Similarity=0.381 Sum_probs=35.4
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
...||||||+|.+|+.+|+.|++.|++|+|+|+.+...+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 358999999999999999999999999999999876544
No 280
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.04 E-value=0.0087 Score=65.55 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=33.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
...+|+|||+|.+|+.+|..|++.|++|+|+|+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 346899999999999999999999999999999865
No 281
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.03 E-value=0.091 Score=58.07 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=30.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.|+|||+|..|+-+|..|++.|.+|+|+|+++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 469999999999999999999999999999875
No 282
>PLN02976 amine oxidase
Probab=95.97 E-value=0.0074 Score=74.72 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=35.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA 273 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~ 273 (748)
...+||+|||+|++|+.+|++|+++|++|+|||+...+.+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 3458999999999999999999999999999999765543
No 283
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.94 E-value=0.0085 Score=68.22 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=33.8
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...+|+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3579999999999999999999999999999998753
No 284
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=95.85 E-value=0.0091 Score=65.45 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=33.4
Q ss_pred cceeEEEECCCchHHHHHHHHHHCC-CcEEEEcccCCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGNYFVA 273 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~~~~~ 273 (748)
...-|||||+|++|+.||.+|-+.| ..|+|+|+.+...+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 3458999999999999999999876 56999999986654
No 285
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.75 E-value=0.0099 Score=67.99 Aligned_cols=35 Identities=40% Similarity=0.486 Sum_probs=32.7
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
..+|+|||+|++|+.+|..|++.|++|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46999999999999999999999999999999864
No 286
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.50 E-value=0.015 Score=67.97 Aligned_cols=36 Identities=33% Similarity=0.407 Sum_probs=32.8
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
.-+|+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 457999999999999999999999999999997654
No 287
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.33 E-value=0.021 Score=61.75 Aligned_cols=42 Identities=29% Similarity=0.235 Sum_probs=35.1
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCc--EEEEcccCCCCCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQK--VLVLEKGNYFVAE 274 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~k--VlVLEkG~~~~~~ 274 (748)
.....+|+|||+|++|+++|++|++.+.+ |+|.|+++.....
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 44568999999999999999999999766 5669999876543
No 288
>PRK13984 putative oxidoreductase; Provisional
Probab=95.25 E-value=0.024 Score=66.92 Aligned_cols=38 Identities=37% Similarity=0.323 Sum_probs=34.5
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
....+|+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34678999999999999999999999999999998754
No 289
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.07 E-value=0.024 Score=63.68 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=31.9
Q ss_pred ceeEEEECCCchHHHHHHHHH-HCCCcEEEEcccCCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLA-SSGQKVLVLEKGNYFV 272 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LA-e~G~kVlVLEkG~~~~ 272 (748)
..-|+|||||++|+.+|.+|+ +.|++|.|+||.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 356999999999999999875 5699999999998653
No 290
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.97 E-value=0.027 Score=60.69 Aligned_cols=37 Identities=46% Similarity=0.611 Sum_probs=32.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHC----CCcEEEEcccCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASS----GQKVLVLEKGNY 270 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~----G~kVlVLEkG~~ 270 (748)
...|||||||||+.|.+.|..|... -+||+++|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3479999999999999999999864 579999999964
No 291
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.88 E-value=0.021 Score=60.04 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=33.0
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
.-+|.|||||++|+++|+.|++. ++|+|.|++.+..+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 46789999999999999999985 789999999876543
No 292
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.024 Score=59.56 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=46.2
Q ss_pred CCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCCCccccccc
Q 004496 423 GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLENPNIGTNLH 500 (748)
Q Consensus 423 G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~p~VG~nL~ 500 (748)
+++|++|+.-++|.=+++ +|+|+.+++. .++..+.+.=..|.+--|-+-+...|.-+ +....-|+-+-
T Consensus 404 Nv~ii~na~Ttei~Gdg~-------kV~Gl~Y~dr--~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIiv 471 (520)
T COG3634 404 NVTIITNAQTTEVKGDGD-------KVTGLEYRDR--VSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIV 471 (520)
T ss_pred CcEEEecceeeEEecCCc-------eecceEEEec--cCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEE
Confidence 599999999998743322 9999999884 33455566667788888877666776665 44433444443
No 293
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.47 E-value=0.04 Score=62.24 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=30.6
Q ss_pred eEEEECCCchHHHHHHHHHHC--CCcEEEEcccCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGNYF 271 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~~~ 271 (748)
.|||||+|++|+.+|.+|.+. +.+|+|+|+.++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 699999999999999999886 6789999999753
No 294
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=94.29 E-value=0.091 Score=58.60 Aligned_cols=36 Identities=42% Similarity=0.453 Sum_probs=32.5
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
....||.+|||+|.+|+-+|..|+|.|.+|.++-|-
T Consensus 52 ~~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl 87 (642)
T KOG2403|consen 52 VDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKL 87 (642)
T ss_pred eeeeceeEEEeccchhhhhhhhhhhcCceEEEEecc
Confidence 345699999999999999999999999999999775
No 295
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.21 E-value=0.044 Score=61.69 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=32.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
-.|.|||||++|+.+|..|+++|+.|+|.|+-+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 78999999999999999999999999999998743
No 296
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.20 E-value=0.052 Score=61.06 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=33.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
...+|||||+|.+|+.+|.+|...+++|+|||+.+++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 3579999999999999999998778999999998764
No 297
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.027 Score=60.42 Aligned_cols=42 Identities=29% Similarity=0.606 Sum_probs=38.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCC
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAED 275 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~ 275 (748)
..+|||||+|.|..=|+.+..|+.+|.+||.+||.+++....
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 346999999999999999999999999999999999887654
No 298
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.066 Score=56.92 Aligned_cols=40 Identities=28% Similarity=0.582 Sum_probs=37.2
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAED 275 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~ 275 (748)
.|||||+|.|..=|+.+..|+-+|.+||+||+.+++....
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 7999999999999999999999999999999999876543
No 299
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.96 E-value=0.15 Score=55.96 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHcCCCccccCCCCCCCccceeccCCCCCCccccccccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCC
Q 004496 367 FQNQVLRKGCENLGFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRS 446 (748)
Q Consensus 367 ~~~~~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~g~~~g~k~~~~~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~ 446 (748)
+..+.+++.++++|++..... + |.. + +....-.+....++..+.+.|++|+++++|++| +++
T Consensus 54 f~~~d~~~fF~~~Gi~~~~e~-~-------grv-f-P~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~------ 115 (376)
T TIGR03862 54 FDAVALQDWARGLGIETFVGS-S-------GRV-F-PVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG------ 115 (376)
T ss_pred CCHHHHHHHHHHCCCceEECC-C-------CEE-C-CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC------
Confidence 335678888999999765321 1 111 1 112223455566777778889999999999997 332
Q ss_pred ceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHH
Q 004496 447 KKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPL 484 (748)
Q Consensus 447 ~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~L 484 (748)
+ ..|.+.. + ...++|+.||||+|+...|.+
T Consensus 116 -~-~~v~~~~---~---~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 116 -T-LRFETPD---G---QSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred -c-EEEEECC---C---ceEEecCEEEEcCCCcccccc
Confidence 2 3454422 1 135899999999999765543
No 300
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.047 Score=57.09 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=30.1
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
--|.|||+|.+|+-+|+.+|++|.+|.+.|--+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 457899999999999999999999999999654
No 301
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.071 Score=57.23 Aligned_cols=42 Identities=33% Similarity=0.542 Sum_probs=38.1
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
...+|||||||.|.-=+++|...++.|.+||=||...|+...
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence 446899999999999999999999999999999999987654
No 302
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.48 E-value=0.083 Score=50.03 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=29.3
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
++|||+|..|+..|++|+++|++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999875
No 303
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.17 E-value=0.085 Score=57.95 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHC---CCcEEEEcccCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASS---GQKVLVLEKGNYF 271 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~---G~kVlVLEkG~~~ 271 (748)
.|||||+|.+|+.+|.+|.++ +.+|+|+|+..+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 389999999999999999743 6899999998764
No 304
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.73 E-value=0.12 Score=57.39 Aligned_cols=35 Identities=43% Similarity=0.477 Sum_probs=33.1
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.-+++|||+|..|+-+|..|+++|++|+|+|+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~ 170 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR 170 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccc
Confidence 47999999999999999999999999999999874
No 305
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.36 E-value=0.15 Score=48.89 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=29.1
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|.|||+|..|.++|..|+++|++|.+..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899999999999999999999999998864
No 306
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.20 E-value=0.16 Score=56.13 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=43.2
Q ss_pred HHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCCC
Q 004496 417 VDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN 492 (748)
Q Consensus 417 ~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~~ 492 (748)
....+.|+++++++.|+++..+++ . ..|.+.+ + .++.++.||+|+|....+.++..+|+..
T Consensus 191 ~~l~~~gV~i~~~~~v~~i~~~~~-------~-~~v~~~~---g----~~i~~D~vI~a~G~~p~~~l~~~~gl~~ 251 (377)
T PRK04965 191 HRLTEMGVHLLLKSQLQGLEKTDS-------G-IRATLDS---G----RSIEVDAVIAAAGLRPNTALARRAGLAV 251 (377)
T ss_pred HHHHhCCCEEEECCeEEEEEccCC-------E-EEEEEcC---C----cEEECCEEEECcCCCcchHHHHHCCCCc
Confidence 344567899999999999754322 2 2344432 2 2688999999999876667888888764
No 307
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=92.09 E-value=0.15 Score=60.98 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=34.7
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
.-.-|.|||||++|+.+|..|-++|+.|+|.||.+...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 45789999999999999999999999999999998654
No 308
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=91.87 E-value=0.2 Score=53.62 Aligned_cols=35 Identities=31% Similarity=0.240 Sum_probs=31.2
Q ss_pred eeEEEECCCchHHHHHHHHHHC--CCcEEEEcccCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGNYF 271 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~~~ 271 (748)
.-|+|||||++|.-+|.+|.++ +.+|.|.||-+.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4899999999999999999884 7999999998753
No 309
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.75 E-value=0.2 Score=51.16 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=30.5
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.++|||+|-.|..+|..|++.|+.|+++|+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999986
No 310
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.51 E-value=0.22 Score=48.89 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=27.4
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|.|||+|..|...|..++.+|++|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899999999999999999999999999864
No 311
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=91.36 E-value=1.8 Score=47.13 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=28.4
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCC--cEEEEcccCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQ--KVLVLEKGNY 270 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~--kVlVLEkG~~ 270 (748)
......|+|||||-.++-++..|.+.+. +|.++=|+..
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 3356889999999999999999998864 7888888764
No 312
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=91.29 E-value=0.22 Score=54.85 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.1
Q ss_pred eeEEEECCCchHHHHHHHHHHCC--CcEEEEcccCCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSG--QKVLVLEKGNYFV 272 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G--~kVlVLEkG~~~~ 272 (748)
--+||||||.+|+.+|.+|+++- .+|++||+..+..
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 45899999999999999999974 8899999998754
No 313
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.24 E-value=0.23 Score=53.27 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=30.2
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|+..|.+|+++|.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 58999999999999999999999999999974
No 314
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.92 E-value=0.26 Score=48.63 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=25.8
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|.|||.|..|+++|..||++|++|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999999999999875
No 315
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=90.70 E-value=0.28 Score=54.58 Aligned_cols=34 Identities=35% Similarity=0.306 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4699999999999999999999999999999863
No 316
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=90.13 E-value=0.32 Score=50.84 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=31.7
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHC-C-CcEEEEcccC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASS-G-QKVLVLEKGN 269 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~-G-~kVlVLEkG~ 269 (748)
...+|.|+|||||.+|+.+|..+.++ | -+|.|||-..
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 44689999999999999999999986 4 4699999654
No 317
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.83 E-value=0.35 Score=52.00 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=30.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|+..|..|+++|++|.++.++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 58999999999999999999999999999874
No 318
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=89.82 E-value=0.38 Score=54.92 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=31.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|.+|+-+|..|++.|.+|.|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 4799999999999999999999999999999864
No 319
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.77 E-value=0.35 Score=51.87 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=30.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|+..|..|+++|++|+++++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999999999999874
No 320
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.63 E-value=0.43 Score=53.85 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=31.2
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 699999999999999999999999999999864
No 321
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=89.47 E-value=0.43 Score=54.29 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=31.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-+++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 4799999999999999999999999999999864
No 322
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=0.37 Score=47.85 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=31.3
Q ss_pred CcceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 234 ~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.....|+|||||+++-++|.+++++-+|-+|.|-.
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 34568999999999999999999999999999965
No 323
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.88 E-value=0.44 Score=50.86 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=28.8
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.|.|||+|..|+..|..|+++|++|.++.++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecH
Confidence 3789999999999999999999999999983
No 324
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.82 E-value=0.5 Score=53.79 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 4799999999999999999999999999999864
No 325
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.78 E-value=0.55 Score=53.63 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=31.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|||+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 3799999999999999999999999999999874
No 326
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.69 E-value=0.46 Score=50.64 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=28.6
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
|.|||+|..|+..|..|+++|++|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 799999999999999999999999999984
No 327
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=88.32 E-value=0.56 Score=53.31 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3799999999999999999999999999999864
No 328
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=88.28 E-value=0.6 Score=52.64 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=32.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
--++|||+|..|+-.|..+++-|.+|+|||+++.+-
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 458999999999999999999999999999998643
No 329
>PRK07846 mycothione reductase; Reviewed
Probab=88.27 E-value=0.56 Score=53.24 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|+|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 4799999999999999999999999999999863
No 330
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.12 E-value=0.4 Score=53.09 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHCCCcEEEEcccCCCCCC
Q 004496 246 CGGGVAAAVLASSGQKVLVLEKGNYFVAE 274 (748)
Q Consensus 246 ~aG~~aA~~LAe~G~kVlVLEkG~~~~~~ 274 (748)
++|+++|++|+++|++|+|||+.+.+.+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 58999999999999999999999876543
No 331
>PRK06370 mercuric reductase; Validated
Probab=88.06 E-value=0.61 Score=53.08 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 4799999999999999999999999999999864
No 332
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=87.99 E-value=0.6 Score=52.94 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 3799999999999999999999999999999863
No 333
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.90 E-value=0.51 Score=46.77 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=28.9
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.-.|+|||+|.++.-+|..|++.|.+|.++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4789999999999999999999999999998875
No 334
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.84 E-value=0.67 Score=52.85 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3689999999999999999999999999999864
No 335
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=87.66 E-value=6.2 Score=43.94 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=45.3
Q ss_pred HHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC
Q 004496 419 AVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE 491 (748)
Q Consensus 419 A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~ 491 (748)
-++.|++++.++.+..+....++ +++-|...+ + .++.|+.||+..|+--...++.. |+.
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~~G------ev~~V~l~d---g----~~l~adlvv~GiG~~p~t~~~~~-g~~ 323 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNSDG------EVSEVKLKD---G----KTLEADLVVVGIGIKPNTSFLEK-GIL 323 (478)
T ss_pred HHhcCeEEEEecceeecccCCCC------cEEEEEecc---C----CEeccCeEEEeeccccccccccc-cce
Confidence 45678999999999998655542 888888876 3 37899999999998766666665 543
No 336
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.66 E-value=0.59 Score=49.57 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=29.3
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|.|||+|..|..+|..|+++|++|+++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 7999999999999999999999999999874
No 337
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.60 E-value=0.7 Score=52.68 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3799999999999999999999999999998864
No 338
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.58 E-value=0.58 Score=53.51 Aligned_cols=32 Identities=41% Similarity=0.593 Sum_probs=30.0
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|+|||+|.+|+.+|..|++.|++|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999999999999764
No 339
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.44 E-value=0.7 Score=52.54 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=31.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 3799999999999999999999999999999864
No 340
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.39 E-value=0.63 Score=50.03 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|...|..++.+|++|++.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999999999999764
No 341
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=87.38 E-value=0.67 Score=52.09 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.|+|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 3799999999999999999999999999998863
No 342
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.27 E-value=0.64 Score=49.28 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|..+|..|+++|++|++++...
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999999999999764
No 343
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.14 E-value=0.64 Score=52.84 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=30.0
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
|.|||.|.+|.++|..|+++|++|++.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 79999999999999999999999999998754
No 344
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.07 E-value=0.68 Score=52.29 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3789999999999999999999999999999863
No 345
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.99 E-value=0.76 Score=51.15 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=29.0
Q ss_pred eeEEEECCCchHHHHHHHHHHC--C-CcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASS--G-QKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~--G-~kVlVLEkG~~ 270 (748)
++|+|||+|+.|..+|.+|.+. . .+|.|+|+-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 6899999999999999999985 2 23999998764
No 346
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.76 E-value=0.64 Score=49.26 Aligned_cols=32 Identities=44% Similarity=0.496 Sum_probs=30.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|...|..|+.+|++|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 58899999999999999999999999999875
No 347
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.73 E-value=0.7 Score=50.26 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=29.7
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|+..|..|+++|++|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 48999999999999999999999999999853
No 348
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.54 E-value=0.87 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.4
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCC-cEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG 268 (748)
...|+|||+|..|+.+|..|++.|. +|+|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5779999999999999999999998 59999976
No 349
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=86.38 E-value=0.87 Score=51.76 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 4799999999999999999999999999999864
No 350
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=86.38 E-value=0.87 Score=51.75 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 209 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4789999999999999999999999999999863
No 351
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.11 E-value=0.93 Score=45.40 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
--|+|||+|-.|...|..|.++|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57899999999999999999999999999753
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.86 E-value=1 Score=40.32 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=27.9
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|||||.|..|..+|..|.+.+.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999777999999875
No 353
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.79 E-value=0.88 Score=51.63 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=31.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 3689999999999999999999999999998863
No 354
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=85.70 E-value=0.96 Score=51.71 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=31.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.|+|||+|..|+-+|..|++.|.+|+|+|+++.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 699999999999999999999999999999864
No 355
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.60 E-value=0.89 Score=48.33 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=29.7
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|..+|..|+++|++|++.++..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999999999999764
No 356
>PRK04148 hypothetical protein; Provisional
Probab=85.54 E-value=0.74 Score=42.61 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=28.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.+++||.| .|..+|..|++.|++|+.+|..+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 358999999 78778999999999999999875
No 357
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.26 E-value=0.92 Score=51.38 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.|+|||+|..|..+|..|++.|++|.+.|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 458999999999999999999999999999864
No 358
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.23 E-value=1.1 Score=42.99 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=27.9
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLE 266 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLE 266 (748)
--|+|||+|-.|.--|..|.+.|.+|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 458999999999999999999999999994
No 359
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=85.04 E-value=1.1 Score=50.78 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=31.0
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 689999999999999999999999999999864
No 360
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.02 E-value=1.2 Score=41.31 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.1
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCc-EEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG 268 (748)
.--++|||+|-+|-.+++.|++.|.+ |.|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46789999999999999999999987 9999875
No 361
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=84.98 E-value=1.2 Score=50.43 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=31.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.|+|||+|..|+-+|..|++.|.+|.++|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 4799999999999999999999999999998864
No 362
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.91 E-value=0.99 Score=47.94 Aligned_cols=32 Identities=34% Similarity=0.450 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|...|..|+.+|++|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38899999999999999999999999999864
No 363
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.80 E-value=1 Score=48.84 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=31.6
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
...-|+|||+|..|+.+|..|+++|. ++.|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35789999999999999999999998 799999864
No 364
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=84.80 E-value=1.1 Score=53.24 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=31.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.++|||+|..|+-.|..|++.|.+|.|+|+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 689999999999999999999999999999874
No 365
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=84.67 E-value=1 Score=41.74 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
.-|+|||+|..|+.+|..|+..|. ++.|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 568999999999999999999998 599999775
No 366
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=84.57 E-value=1.2 Score=50.63 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.++|+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 3699999999999999999999999999999864
No 367
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.41 E-value=1.1 Score=48.54 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=30.8
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
..-|+|||+|..|+.+|..|+++|. ++.|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999997 799999874
No 368
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.36 E-value=1.1 Score=48.43 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=28.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.+.|||+|..|+..|..|+++|++|.++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3789999999999999999999999999884
No 369
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.29 E-value=1.4 Score=41.31 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
|+|||.|..|+.+|..|++.|. ++.++|...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 7999999999999999999997 599998764
No 370
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=84.23 E-value=0.8 Score=46.77 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=27.0
Q ss_pred EEEECCCchHHHHHHHHHHC--CCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASS--GQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~ 269 (748)
+||||||++|.++|..||.. ...||+|-+.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 69999999999999999974 66899987764
No 371
>PRK06116 glutathione reductase; Validated
Probab=84.14 E-value=1.2 Score=50.43 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=31.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4789999999999999999999999999999863
No 372
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.13 E-value=1.1 Score=48.42 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=29.7
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|...|..|+++|++|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999999999999853
No 373
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=84.03 E-value=1.3 Score=49.92 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=31.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 789999999999999999999999999999864
No 374
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.94 E-value=1.2 Score=46.54 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=31.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCC-CcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~ 269 (748)
...-|+|||.|..|+.+|..|++.| .+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3578999999999999999999999 5799999764
No 375
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.80 E-value=1.2 Score=47.07 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|+..|..|+++|++|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999999999998764
No 376
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.76 E-value=1.2 Score=51.61 Aligned_cols=34 Identities=41% Similarity=0.384 Sum_probs=31.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 4799999999999999999999999999998764
No 377
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.72 E-value=1.4 Score=42.91 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=28.6
Q ss_pred EEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
|+|||+|..|+.+|..|++.|.. +.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 79999999999999999999985 99999864
No 378
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.72 E-value=1.2 Score=47.69 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=28.7
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+.|+|+|+.|+..|++|+++|..|+++=|..
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 6899999999999999999998899988875
No 379
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.69 E-value=1.2 Score=48.89 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=30.0
Q ss_pred eEEEECCCchHHHHHHHHHHCC-CcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~ 269 (748)
+++|||+|-.|.++|+.||++| .+|+|.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 6899999999999999999998 8999999874
No 380
>PTZ00058 glutathione reductase; Provisional
Probab=83.56 E-value=1.3 Score=51.53 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=31.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 3699999999999999999999999999999864
No 381
>PRK10262 thioredoxin reductase; Provisional
Probab=83.52 E-value=1.2 Score=47.89 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.|+|||+|..|+-+|..|++.|.+|.++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 478999999999999999999999999999875
No 382
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=83.33 E-value=1.4 Score=53.73 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=32.1
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
-.++|||+|..|+-+|..|++.|.+|.|+|+++..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 36899999999999999999999999999998754
No 383
>PLN02507 glutathione reductase
Probab=83.18 E-value=1.3 Score=50.82 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=30.9
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.|+|||+|..|+-+|..|++.|.+|.|+|+++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 379999999999999999999999999999886
No 384
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=83.12 E-value=1.5 Score=44.03 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=28.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
-|+|||+|..|..-|..|.+.|.+|+|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 6899999999999999999999999999754
No 385
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.98 E-value=1.5 Score=43.77 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=29.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
--++|+|.|-.|..+|.+|.+.|.+|++.|+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35899999999999999999999999999865
No 386
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=82.96 E-value=1.4 Score=53.84 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=32.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFV 272 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~ 272 (748)
.++|||+|..|+-+|..|++.|.+|.|+|+++..-
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 58999999999999999999999999999987543
No 387
>PRK13748 putative mercuric reductase; Provisional
Probab=82.78 E-value=1.5 Score=51.17 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=30.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.++|||+|..|+-+|..|++.|.+|.|+++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 379999999999999999999999999999854
No 388
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.75 E-value=1.3 Score=51.13 Aligned_cols=35 Identities=37% Similarity=0.326 Sum_probs=32.2
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYF 271 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~ 271 (748)
-+|+|||+|..|+-+|..|+..|.+|.|+++++..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 48999999999999999999999999999998753
No 389
>PRK14694 putative mercuric reductase; Provisional
Probab=82.74 E-value=1.7 Score=49.51 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.++|||+|..|+-+|..|++.|.+|.|++++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 379999999999999999999999999999753
No 390
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.46 E-value=1.4 Score=47.97 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=29.7
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+.|||+|..|++.|.-||+.|+.|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 36899999999999999999999999999875
No 391
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=82.43 E-value=1.3 Score=51.75 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=31.5
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-.|+|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 4799999999999999999999999999999863
No 392
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=82.26 E-value=1.5 Score=46.31 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.|+|||+|..|+-+|..|++.|.+|.++++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 489999999999999999999999999999875
No 393
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.19 E-value=1.5 Score=47.05 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=29.4
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|+..|..|+++|++|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999999999999753
No 394
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=82.12 E-value=1.1 Score=49.47 Aligned_cols=69 Identities=29% Similarity=0.454 Sum_probs=44.9
Q ss_pred HhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHh-cCCCCCc----
Q 004496 420 VDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMIS-SGLENPN---- 494 (748)
Q Consensus 420 ~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~-SGi~~p~---- 494 (748)
.+.|++|++++.|+++ +.+ +|.+.+ + .. +|.++.||-|||. .-+.++.. +|+....
T Consensus 220 ~~~GV~v~l~~~Vt~v--~~~----------~v~~~~---g--~~-~I~~~tvvWaaGv-~a~~~~~~l~~~e~dr~Grl 280 (405)
T COG1252 220 EKLGVEVLLGTPVTEV--TPD----------GVTLKD---G--EE-EIPADTVVWAAGV-RASPLLKDLSGLETDRRGRL 280 (405)
T ss_pred HHCCCEEEcCCceEEE--CCC----------cEEEcc---C--Ce-eEecCEEEEcCCC-cCChhhhhcChhhhccCCCE
Confidence 3568999999999997 333 466654 2 11 7999999999996 45556665 6765332
Q ss_pred -cccccc--cCccceE
Q 004496 495 -IGTNLH--LHPVLLA 507 (748)
Q Consensus 495 -VG~nL~--~Hp~~~~ 507 (748)
|-.+|+ .||..++
T Consensus 281 ~V~~~L~~~~~~~IFa 296 (405)
T COG1252 281 VVNPTLQVPGHPDIFA 296 (405)
T ss_pred EeCCCcccCCCCCeEE
Confidence 444554 3555444
No 395
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.02 E-value=0.96 Score=39.90 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=29.4
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.-.|+|||+|..|..-+..|.+.|.+|+|+-..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 467899999999999999999999999999765
No 396
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=81.88 E-value=1.6 Score=46.88 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=29.8
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|+..|..|+++|++|.++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999999999999864
No 397
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.81 E-value=1.8 Score=43.32 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=31.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
.+.-|+|||.|..|+.+|..|+..|. ++.++|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35789999999999999999999997 799999764
No 398
>PLN02546 glutathione reductase
Probab=81.71 E-value=1.5 Score=50.95 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=30.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|+|||+|..|+-+|..|++.|.+|.|+|+++
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 79999999999999999999999999999886
No 399
>PRK14727 putative mercuric reductase; Provisional
Probab=81.45 E-value=1.6 Score=49.89 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
-.++|||+|..|+-+|..|++.|.+|.|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 36999999999999999999999999999975
No 400
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.37 E-value=1.7 Score=46.22 Aligned_cols=31 Identities=35% Similarity=0.455 Sum_probs=29.2
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|.|||+|..|..+|..|+.+|++|.+.|+..
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999999999999764
No 401
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=81.35 E-value=1.7 Score=47.57 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=29.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
-.|+|||+|..|+-+|..|++.|.+ |.|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 3699999999999999999999997 99999764
No 402
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=81.22 E-value=1.6 Score=48.86 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||.|..|+.+|..|+++|++|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 37899999999999999999999999999864
No 403
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.10 E-value=1.6 Score=48.91 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=29.8
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||.|..|+.+|..|+++|++|+++++..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 48999999999999999999999999999764
No 404
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=81.03 E-value=1.8 Score=48.05 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=41.4
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCcCCCchhhhhhhCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAEDYSSLEGPSMHELYESGG 292 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~ 292 (748)
.--||+||+|..|+-+|..|...+++|+++++-+..-+.-|.......+...|++.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kg 269 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKG 269 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcC
Confidence 456899999999999999999999999999998765544333333333444555433
No 405
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=80.95 E-value=2.1 Score=41.44 Aligned_cols=34 Identities=32% Similarity=0.270 Sum_probs=30.2
Q ss_pred cceeEEEECCCc-hHHHHHHHHHHCCCcEEEEccc
Q 004496 235 IKCDVVVVGSGC-GGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 235 ~~~DVVIVGsG~-aG~~aA~~LAe~G~kVlVLEkG 268 (748)
....++|||+|- +|..+|..|.+.|.+|.|+.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 458899999996 6998999999999999999975
No 406
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.66 E-value=1.8 Score=49.07 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=30.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
=.|||||+|..|+-+|..|++.|.+|.|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999999875
No 407
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=80.63 E-value=1.9 Score=46.19 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=28.2
Q ss_pred eEEEECCCchHHHHHHHHHHCCC-cEEEEccc
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKG 268 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG 268 (748)
-|.|||+|..|+.+|+.|+..|+ +|+++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 47899999999999999999887 89999983
No 408
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=80.35 E-value=1.8 Score=49.71 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=29.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|.-+|..|+++|++|+|.|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38999999999999999999999999999875
No 409
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=80.24 E-value=2.1 Score=49.00 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=29.2
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.++|||+|..|+-+|..|++.|.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 5899999999999999999999999999974
No 410
>PTZ00052 thioredoxin reductase; Provisional
Probab=80.22 E-value=1.9 Score=49.65 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=29.3
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
.++|||+|..|+-+|..|++.|.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 6999999999999999999999999999864
No 411
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=79.65 E-value=2.1 Score=47.19 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=30.7
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..+|+|||+|..|..+|..|...|.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3569999999999999999999999999999753
No 412
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=79.61 E-value=2.3 Score=43.79 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=29.5
Q ss_pred cceeEEEECCCchHHHHHHHHHHCC-----------CcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSG-----------QKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G-----------~kVlVLEkG~ 269 (748)
....|+|||+|..|+.++..||+.| .++.|+|...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4688999999999999999999974 2788888653
No 413
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=79.38 E-value=2.4 Score=41.02 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=29.4
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..-|+|+|+|..|..||.-|...|.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4789999999999999999999999999999763
No 414
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=79.35 E-value=2.2 Score=43.21 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=28.2
Q ss_pred EEEEC-CCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVG-SGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVG-sG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+.||| +|..|..+|..|+++|++|.+..+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999999999997754
No 415
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.17 E-value=2.3 Score=45.50 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|..+|..|+++|++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999999999998753
No 416
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.50 E-value=3.3 Score=45.17 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=34.2
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHC-CCcEEEEcccCCC
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEKGNYF 271 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~-G~kVlVLEkG~~~ 271 (748)
+...+|+|.||-|+.-+..|..|.+. +++++.|||-+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 34579999999999999999999997 4889999998753
No 417
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=78.47 E-value=2.6 Score=48.35 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=28.9
Q ss_pred eeEEEECCCchHHHHHHHHHH---CCCcEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLAS---SGQKVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe---~G~kVlVLEkG~~ 270 (748)
-.++|||+|..|+-+|..++. .|.+|.|+|+++.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 368999999999999976654 4999999999874
No 418
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.45 E-value=2.7 Score=42.37 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=31.1
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
...-|+|||+|..|+.+|..|++.|.. +.++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 357899999999999999999999976 99999764
No 419
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=78.05 E-value=2.5 Score=43.09 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=29.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCc---EEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQK---VLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~k---VlVLEkG~ 269 (748)
--++|+|+|.+|..+|..|++.|.+ |.|+++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4689999999999999999999975 99999874
No 420
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=77.89 E-value=2.3 Score=44.92 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=29.2
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||.|..|...|..|+++|++|+++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 37899999999999999999999999998753
No 421
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=77.85 E-value=2.7 Score=47.28 Aligned_cols=33 Identities=48% Similarity=0.473 Sum_probs=29.4
Q ss_pred eEEEECCCchHHHHHHHHHH--------------CCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLAS--------------SGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe--------------~G~kVlVLEkG~~ 270 (748)
.++|||+|..|.-+|..|++ .|.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 79999999999999999986 4789999999863
No 422
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.84 E-value=2.7 Score=44.51 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=29.8
Q ss_pred eeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
-.|+|||+|.+|..+|+.|++.|. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999997 699998863
No 423
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=77.79 E-value=2.1 Score=44.68 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.3
Q ss_pred ceeEEEECCCchHHHHHHHHHHCC-------CcEEEEccc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSG-------QKVLVLEKG 268 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G-------~kVlVLEkG 268 (748)
..+++|||+|..|+++|..+.+.+ .+|.|++--
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 468999999999999998887743 567777643
No 424
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=77.75 E-value=2.9 Score=43.08 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=30.1
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
...|+|||.|..|+.+|..|+..|. ++.++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 5789999999999999999999996 588888764
No 425
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.73 E-value=2.4 Score=48.73 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=29.4
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|-|||+|..|.-+|..|+.+|+.|.|.|+..
T Consensus 10 V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 7899999999999999999999999999875
No 426
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.62 E-value=2.3 Score=51.12 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=30.0
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|.-+|..+|.+|++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999999999999764
No 427
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=77.58 E-value=2.3 Score=51.01 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=30.0
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|.-+|..+|.+|++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999999999999874
No 428
>PRK08328 hypothetical protein; Provisional
Probab=77.58 E-value=2.8 Score=42.87 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=29.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
..-|+|||+|..|+.+|..|+..|.. +.|+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 56799999999999999999999974 88887653
No 429
>PRK12831 putative oxidoreductase; Provisional
Probab=77.46 E-value=2.6 Score=48.01 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=30.9
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.=.|+|||+|..|+-+|..|++.|.+|.|+++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3489999999999999999999999999999764
No 430
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=77.43 E-value=2.5 Score=44.98 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=29.2
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|-|||+|..|.-.|..+|..|++|++.|...
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 36899999999999999999889999999863
No 431
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.01 E-value=2.9 Score=44.85 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=29.0
Q ss_pred eEEEECCCchHHHHHHHHHHCC--CcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSG--QKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G--~kVlVLEkG~ 269 (748)
.|.|||+|..|+++|+.|+..| ..|+++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 4899999999999999999999 4799999864
No 432
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=76.99 E-value=2.5 Score=48.48 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|.|||+|..|...|..|+.+|++|+|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48899999999999999999999999999854
No 433
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=76.75 E-value=3.4 Score=42.73 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=31.0
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
....|+|||.|..|+.+|..|+..|. ++.|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 46889999999999999999999996 588888764
No 434
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.69 E-value=2.7 Score=47.57 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=29.5
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|+|+|+|..|..+|..|++.|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 37999999999999999999999999999764
No 435
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=76.60 E-value=3.1 Score=42.42 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=30.1
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
..-|+|||.|..|+.+|..|+..|. ++.|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5779999999999999999999997 588888664
No 436
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.53 E-value=2.9 Score=46.58 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=30.7
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.-.|+|+|.|..|..+|..|...|.+|+|+|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4578999999999999999999999999999764
No 437
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.06 E-value=3.2 Score=44.09 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=28.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCc-EEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG 268 (748)
--++|+|+|-+|.++|+.|++.|.+ |.|+.|.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999987 9999875
No 438
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=76.01 E-value=2.7 Score=41.99 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=31.5
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.---|-|||+|..|+-+|...|.+|+.|.|+++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 34568999999999999999999999999999875
No 439
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.78 E-value=3.5 Score=43.59 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.2
Q ss_pred EEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
|+|||+|.-|+.+|..|+..|.+ ++++|.+.
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 79999999999999999999974 99998775
No 440
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=75.22 E-value=3.8 Score=39.36 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=27.4
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|-|||-|..|...|.+|+++|++|.+.++..
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 47899999999999999999999999999764
No 441
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.87 E-value=3.1 Score=50.12 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=30.0
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|||+|..|.-+|..++.+|++|+++|...
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 48999999999999999999999999999875
No 442
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=74.66 E-value=3.5 Score=47.98 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=31.2
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
...-|+|||+|.-|+.+|..|+..|.+ ++++|.+.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 357899999999999999999999975 88888775
No 443
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=74.51 E-value=3.8 Score=40.83 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=30.5
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
+.-|+|||.|..|+.+|..|+..|.+ +.++|...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 57899999999999999999999976 99998764
No 444
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=74.32 E-value=3.6 Score=41.02 Aligned_cols=30 Identities=27% Similarity=0.487 Sum_probs=27.4
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
+.|+|.|-.|...|.+|+++|+.|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 689999999999999999999999998444
No 445
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=74.25 E-value=3.9 Score=40.71 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.6
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
.+.-|+|||+|..|+.+|..|+.+|.+ +.++|-..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 357799999999999999999999975 88888664
No 446
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=74.22 E-value=3.2 Score=47.19 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=28.7
Q ss_pred eEEEECCCchHHHHHHHHHHC--CCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASS--GQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~--G~kVlVLEkG~ 269 (748)
.|.|||+|..|+++|..||++ |++|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 489999999999999999998 58899999764
No 447
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=74.15 E-value=5.3 Score=33.79 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=28.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHC-CCcEEEEcc
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEK 267 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~-G~kVlVLEk 267 (748)
.-.++|+|+|..|..+|..|.+. +.+|.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34699999999999999999998 678999988
No 448
>PLN02256 arogenate dehydrogenase
Probab=74.15 E-value=6.3 Score=42.16 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=29.0
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
..+.|||.|..|...|..|.+.|.+|.++++.
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 45999999999999999999999999998865
No 449
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=74.03 E-value=6.1 Score=41.51 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=28.8
Q ss_pred eEEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
.++|+|+|-++-++++.|++.|.+ |.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 689999999999999999999975 99998864
No 450
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=73.99 E-value=3.6 Score=44.01 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=28.3
Q ss_pred EEEECCCchHHHHHHHHHHCC--CcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSG--QKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G--~kVlVLEkG~ 269 (748)
|.|||+|..|.++|+.|+..| ..|.++++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 799999999999999999998 4799999864
No 451
>PRK08223 hypothetical protein; Validated
Probab=73.70 E-value=3.9 Score=43.08 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=30.5
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
...-|+|||.|..|+.+|..||.+|. ++.|+|-..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46889999999999999999999997 488888654
No 452
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=73.60 E-value=3.7 Score=43.50 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=30.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
--++|||.|..|..+|..|...|.+|.|.++..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 568999999999999999999999999999864
No 453
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=73.43 E-value=3.8 Score=45.80 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=28.3
Q ss_pred EEEECCCchHHHHHHHHHHCCC------cEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQ------KVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~------kVlVLEkG~ 269 (748)
|+|||+|..|+-++..||..|. ++.|+|...
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 7999999999999999999998 799988764
No 454
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=73.40 E-value=4.1 Score=41.76 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=27.6
Q ss_pred EEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
|+|||+|..|+.++..|+..|. ++.|+|...
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7999999999999999999996 488888753
No 455
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=73.29 E-value=3.4 Score=44.13 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=28.1
Q ss_pred EEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
|.|||+|..|..+|..|+..|+ .|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999877 999999874
No 456
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=73.22 E-value=14 Score=42.05 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=46.4
Q ss_pred hHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEecc------CC-------ceeEEEEEccEEEEcCCCCCC-
Q 004496 416 LVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALN------KN-------VTRKLQIKAKATISACGSLLT- 481 (748)
Q Consensus 416 L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~------~g-------~~~~~~i~Ak~VVlAaGai~S- 481 (748)
+..+.+.|++|++++.+++|..++++ ++++|++.... +| .++..++.+|.||+|.|-.-.
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~g------~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 400 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDEDG------RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA 400 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCCC------eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc
Confidence 44566789999999999998654331 78888764211 11 123568999999999996433
Q ss_pred HHHHHhcCCC
Q 004496 482 PPLMISSGLE 491 (748)
Q Consensus 482 p~LLl~SGi~ 491 (748)
..++..+|+.
T Consensus 401 ~~~~~~~gl~ 410 (467)
T TIGR01318 401 MPWLAGHGIT 410 (467)
T ss_pred cccccccCcc
Confidence 2345555553
No 457
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=73.09 E-value=3.8 Score=38.17 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=26.7
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
++|+|+|..+..+|.-++.-|++|+|+|-.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999764
No 458
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=72.85 E-value=3.5 Score=43.66 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=28.7
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|-|||.|..|...|..|++.|++|.+.++..
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 6799999999999999999999999998764
No 459
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.68 E-value=4.5 Score=42.84 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.6
Q ss_pred EEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
|+|||+|..|+-+|..|+..|.+ +.|+|-..
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 79999999999999999999974 88888653
No 460
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=72.61 E-value=4 Score=46.15 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=32.2
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.-+|+|||+|.+|.-+|..|++.|.+|.++=|.+.
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 45799999999999999999999999999998864
No 461
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=72.29 E-value=4.2 Score=46.20 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=30.4
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
.-.|+|||+|..|+-+|..|++.|. +|.|+++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3479999999999999999999998 799999864
No 462
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.22 E-value=4.2 Score=45.99 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=29.9
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|+|||+|..|..+|..|.+.|++|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999999999999999864
No 463
>PRK08017 oxidoreductase; Provisional
Probab=72.10 E-value=4.5 Score=41.51 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=28.6
Q ss_pred eEEEECC-CchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGS-GCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGs-G~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|+|+|+ |..|..+|..|+++|.+|+++.+..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3899998 9999999999999999999987753
No 464
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.07 E-value=4.3 Score=43.45 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=27.9
Q ss_pred EEEECCCchHHHHHHHHHHCCCc-EEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQK-VLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~k-VlVLEkG~ 269 (748)
|+|||+|..|+-+|..|+..|.+ +.|+|...
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 79999999999999999999974 88888764
No 465
>PRK06223 malate dehydrogenase; Reviewed
Probab=71.72 E-value=4.5 Score=43.29 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
.|.|||+|..|..+|..|+..|+ .|.++|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 68999999999999999999876 899999843
No 466
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=71.67 E-value=4.3 Score=46.99 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.2
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
--++|+|+|.+|..+|+.|++.|.+|+|+.|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35899999999999999999999999999874
No 467
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=71.66 E-value=5.5 Score=34.20 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=27.7
Q ss_pred EEEECCCchHHHHHHHHHHCC---CcEEEE-cccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSG---QKVLVL-EKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G---~kVlVL-EkG~ 269 (748)
+.|||+|-.|..++..|.++| .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 578999999999999999999 899966 7764
No 468
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=71.65 E-value=4.2 Score=45.10 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=27.3
Q ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 239 VVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 239 VVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
|.|||.|..|+.+|..||. |++|+++|+..
T Consensus 3 I~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 7899999999999988885 99999999875
No 469
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=71.30 E-value=11 Score=39.39 Aligned_cols=63 Identities=22% Similarity=0.186 Sum_probs=41.6
Q ss_pred ccchHHHHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC
Q 004496 413 VTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE 491 (748)
Q Consensus 413 ~~~L~~A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~ 491 (748)
..++..+.+.|++++.+++|+++..+++ ++ .|.+.. ...+++||.||+|+|.. + .+....|+.
T Consensus 95 ~~l~~~~~~~gv~~~~~~~v~~~~~~~~-------~~-~~~~~~------~~~~~~a~~vv~a~G~~-s-~~~~~~~~~ 157 (295)
T TIGR02032 95 EQLAERAQEAGAELRLGTTVLDVEIHDD-------RV-VVIVRG------GEGTVTAKIVIGADGSR-S-IVAKKLGLR 157 (295)
T ss_pred HHHHHHHHHcCCEEEeCcEEeeEEEeCC-------EE-EEEEcC------ccEEEEeCEEEECCCcc-h-HHHHhcCCC
Confidence 3455556677899999999999876654 32 222221 12478999999999974 3 344444554
No 470
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=71.24 E-value=4.7 Score=42.25 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=29.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-.++|+|+|..|..+|..|++.|.+|.|+.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 358999999999999999999999999998753
No 471
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=71.04 E-value=5.1 Score=43.18 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.2
Q ss_pred eeEEEECCCchHHHHHHHHHHCCC-cEEEEcccCC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGNY 270 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~~ 270 (748)
.-|.|||+|..|..+|+.|+..|+ +|+|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 468999999999999999999996 8999998653
No 472
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=71.03 E-value=3.7 Score=43.19 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=31.8
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
..-+|+|||+|..|.-+|.-+.--|.+|++||...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 35789999999999999999999999999999874
No 473
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.88 E-value=4.1 Score=47.58 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=31.6
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
+-.+||||.|..|-.+|.+|.++|++|+++|+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 4678999999999999999999999999999875
No 474
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=70.73 E-value=4.3 Score=46.13 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=31.1
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.-.|+|||+|..|+=+|..|++.+.+|.++.++.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3479999999999999999999999999999874
No 475
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=70.36 E-value=5.8 Score=39.22 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=28.8
Q ss_pred eeEEEECC-CchHHHHHHHHHHCCCcEEEEccc
Q 004496 237 CDVVVVGS-GCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGs-G~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
-.++|+|+ |..|..+|..|++.|.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56899996 999999999999999999999765
No 476
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=70.25 E-value=5.6 Score=41.92 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=30.3
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.-|+|||.|..|...|..|.++|+.|.++.+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~ 36 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDR 36 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecC
Confidence 458999999999999999999999999998875
No 477
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.22 E-value=6.4 Score=41.98 Aligned_cols=40 Identities=30% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCcCcceeEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 231 NLFEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 231 ~~~~~~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
.++-.--||.|||+|-.|.-+|..||--=..|+|||=.+.
T Consensus 349 GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 349 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 3444567999999999999999999965556999996653
No 478
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=69.99 E-value=5.1 Score=42.66 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=29.6
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.|-|||.|..|...|..|+++|++|.+.++..
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 57899999999999999999999999998864
No 479
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=69.96 E-value=5.1 Score=44.47 Aligned_cols=34 Identities=32% Similarity=0.310 Sum_probs=31.0
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.--|+|||.|..|..+|..|...|.+|+|+|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4579999999999999999999999999999765
No 480
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=69.44 E-value=5.9 Score=40.52 Aligned_cols=34 Identities=38% Similarity=0.454 Sum_probs=30.0
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
..-|+|||.|..|+.+|..|++.|. +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4678999999999999999999997 688888664
No 481
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.43 E-value=4.7 Score=48.51 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=29.2
Q ss_pred eEEEECCCchHHHHHHHHH-HCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLA-SSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LA-e~G~kVlVLEkG~ 269 (748)
-|.|||+|..|.-.|..+| .+|+.|+++|...
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 4899999999999999999 8899999999754
No 482
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=69.37 E-value=5.1 Score=44.20 Aligned_cols=31 Identities=42% Similarity=0.564 Sum_probs=28.6
Q ss_pred eEEEEC-CCchHHHHHHHHHHCCCcEEEEccc
Q 004496 238 DVVVVG-SGCGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 238 DVVIVG-sG~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
-|.||| .|..|...|..|.++|+.|.+.++.
T Consensus 100 ~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 100 PVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred eEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 479999 8999999999999999999999974
No 483
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=69.04 E-value=12 Score=41.03 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=40.6
Q ss_pred HHhCCCEEEcCcEEEEEEEecCCCCCCCceEEEEEEEeccCCceeEEEEEccEEEEcCCCCCCHHHHHhcCCC
Q 004496 419 AVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLE 491 (748)
Q Consensus 419 A~~~G~~i~~~~~V~~I~~~~~~~g~~~~rv~GV~~~~~~~g~~~~~~i~Ak~VVlAaGai~Sp~LLl~SGi~ 491 (748)
.++.|+.++.|+.|+.+..... -+...- ++| .+++.|.||+|.|---+..|...||+.
T Consensus 403 ir~~GV~V~pna~v~sv~~~~~----------nl~lkL-~dG----~~l~tD~vVvavG~ePN~ela~~sgLe 460 (659)
T KOG1346|consen 403 IRKGGVDVRPNAKVESVRKCCK----------NLVLKL-SDG----SELRTDLVVVAVGEEPNSELAEASGLE 460 (659)
T ss_pred HHhcCceeccchhhhhhhhhcc----------ceEEEe-cCC----CeeeeeeEEEEecCCCchhhcccccce
Confidence 3445699999999988754432 122322 123 378889999999976677888888875
No 484
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.02 E-value=5.7 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=30.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
.+.-|+|||+|..|+.+|..|+..|. ++.|++...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45679999999999999999999997 599998764
No 485
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=68.96 E-value=4.8 Score=45.74 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=30.7
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.+|-|||.|..|...|.+|+++|++|.|.++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 578999999999999999999999999998864
No 486
>PRK06153 hypothetical protein; Provisional
Probab=68.96 E-value=6.1 Score=43.29 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=30.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
...-|+|||.|..|+.+|..||+.|. ++.|+|...
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 35789999999999999999999996 599998764
No 487
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.76 E-value=6.1 Score=39.95 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=27.5
Q ss_pred eEEEECC-CchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGS-GCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGs-G~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
=++|+|+ |..|..+|.+|++.|.+|+++.|..
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 4688885 8889999999999999999998753
No 488
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=68.72 E-value=5.7 Score=43.69 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=30.9
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
...-|+|||+|..|+.+|..|+..|. ++.|+|...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 35679999999999999999999996 699998764
No 489
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=68.67 E-value=5.2 Score=48.04 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.0
Q ss_pred eEEEECCCchHHHHHHHHH-HCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLA-SSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LA-e~G~kVlVLEkG~ 269 (748)
-|.|||+|..|...|..+| .+|+.|+++|..+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4899999999999999998 5899999999764
No 490
>PRK06057 short chain dehydrogenase; Provisional
Probab=68.49 E-value=6 Score=40.68 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=28.3
Q ss_pred eEEEECC-CchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGS-GCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGs-G~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|+|+|+ |..|..+|.+|+++|++|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4899998 7889999999999999999998753
No 491
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=68.49 E-value=6 Score=44.24 Aligned_cols=34 Identities=35% Similarity=0.309 Sum_probs=31.0
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
.--|+|||.|..|..+|..|...|.+|+|.|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4569999999999999999999999999999765
No 492
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=68.40 E-value=5.8 Score=41.53 Aligned_cols=34 Identities=35% Similarity=0.470 Sum_probs=28.0
Q ss_pred cCcceeEEEECCCchHHHHHHHHHHCCC-cEEEEcc
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEK 267 (748)
Q Consensus 233 ~~~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEk 267 (748)
.+.+| |||||+|-.|+.++..|.+.|. |+.|++=
T Consensus 72 l~~sy-VVVVG~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 72 LTNSY-VVVVGAGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred hcCcE-EEEEecCchhHHHHHHHHHhcCceEEEech
Confidence 44444 7899999999999999999996 5888774
No 493
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=68.27 E-value=5.9 Score=44.03 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=30.8
Q ss_pred cceeEEEECCCchHHHHHHHHHHCCC-cEEEEcccC
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKGN 269 (748)
Q Consensus 235 ~~~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG~ 269 (748)
.+.-|+|||.|..|+.+|..|+.+|. ++.|+|...
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 36789999999999999999999997 588888664
No 494
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.13 E-value=6 Score=44.76 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=30.1
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccCC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNY 270 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~~ 270 (748)
-++|+|.|.+|..+|..|++.|.+|++.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 589999999999999999999999999997653
No 495
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=67.61 E-value=6.2 Score=41.58 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=29.6
Q ss_pred eeEEEECCCchHHHHHHHHHHCC-CcEEEEcccC
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGN 269 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G-~kVlVLEkG~ 269 (748)
-.++|+|+|-+|..+|..|++.| .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 46899999999999999999999 7899998863
No 496
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.55 E-value=6.2 Score=44.87 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=29.8
Q ss_pred eEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 238 DVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 238 DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
-|.|+|.|.+|..+|..|.+.|++|.+.|+..
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999875
No 497
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=67.53 E-value=6.3 Score=37.76 Aligned_cols=34 Identities=35% Similarity=0.328 Sum_probs=27.5
Q ss_pred ceeEEEECCCchHHHHHHHHHHCCCcEEEEcccC
Q 004496 236 KCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGN 269 (748)
Q Consensus 236 ~~DVVIVGsG~aG~~aA~~LAe~G~kVlVLEkG~ 269 (748)
---++|+|=|-.|-.+|.+|...|.+|.|.|..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4568999999999999999999999999999875
No 498
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.37 E-value=6.7 Score=41.00 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=27.0
Q ss_pred eEEEECCC---chHHHHHHHHHHCCCcEEEEccc
Q 004496 238 DVVVVGSG---CGGGVAAAVLASSGQKVLVLEKG 268 (748)
Q Consensus 238 DVVIVGsG---~aG~~aA~~LAe~G~kVlVLEkG 268 (748)
=+||.|++ -.|..+|.+|+++|.+|++..+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 47889987 58999999999999999998764
No 499
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=67.34 E-value=9.9 Score=40.29 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=28.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCC-cEEEEccc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQ-KVLVLEKG 268 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~-kVlVLEkG 268 (748)
-.++|||+|-++.++|+.|++.|. +|.|+.|.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 368999999999999999999986 69999886
No 500
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=67.29 E-value=6.9 Score=39.68 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=27.4
Q ss_pred eeEEEECCCchHHHHHHHHHHCCCcEEEEc
Q 004496 237 CDVVVVGSGCGGGVAAAVLASSGQKVLVLE 266 (748)
Q Consensus 237 ~DVVIVGsG~aG~~aA~~LAe~G~kVlVLE 266 (748)
--|+|||||-.+.-=+..|.+.|.+|+|+=
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 469999999999998999999999999995
Done!