Query 004496
Match_columns 748
No_of_seqs 339 out of 1963
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 18:23:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004496.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1802-1806//hhsearch_pdb/004496hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t37_A Probable dehydrogenase; 1.0 1 1 523.5 33.6 459 233-735 14-520 (526)
2 3fim_B ARYL-alcohol oxidase; A 1.0 1 1 519.0 25.8 476 236-736 2-563 (566)
3 1gpe_A Protein (glucose oxidas 1.0 1 1 509.5 31.2 474 234-740 22-584 (587)
4 2jbv_A Choline oxidase; alcoho 1.0 1 1 503.1 33.3 464 234-741 11-532 (546)
5 3qvp_A Glucose oxidase; oxidor 1.0 1 1 500.1 33.2 476 233-740 16-580 (583)
6 3q9t_A Choline dehydrogenase a 1.0 1 1 491.0 25.9 470 234-738 4-572 (577)
7 1coy_A Cholesterol oxidase; ox 1.0 1 1 455.0 40.4 434 233-738 8-504 (507)
8 1n4w_A CHOD, cholesterol oxida 1.0 1 1 452.6 39.4 435 235-740 4-501 (504)
9 1ju2_A HydroxynitrIle lyase; f 1.0 1 1 450.1 33.5 452 233-739 23-517 (536)
10 1kdg_A CDH, cellobiose dehydro 1.0 1 1 446.0 28.5 460 234-739 5-543 (546)
No 1
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=1.00 E-value=1 Score=523.52 Aligned_cols=459 Identities=20% Similarity=0.264 Sum_probs=328.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHH-CCCCEEEECCCCCCCCCC------CCCCCCCCHHHHHHHCCCEECCCCCEEEEC
Q ss_conf 6742229999988049999999988-999399995568999889------778679832455440894003899578721
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLAS-SGQKVLVLEKGNYFVAED------YSSLEGPSMHELYESGGLLSTLDGKFMVFA 305 (748)
Q Consensus 233 ~~~~~DVIIVGsG~gG~vaA~~LA~-~G~~VlVLEkG~~~~~~~------~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~ 305 (748)
...+|||||||||++|+++|.+||| .|++|||||+|+...... ++....+.+.|.|.+.++....+..+.+.+
T Consensus 14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~~~~~~~~~~r 93 (526)
T 3t37_A 14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAGTAGRAHHWAR 93 (526)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGGGTTBCCEECC
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 79972089989648999999999758798599991789999961017656865149855467640246888997473347
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC-------------CCCCHHHHHH
Q ss_conf 671255225200232138826776543204999879254579999753414867887-------------6576457999
Q 004496 306 GSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHC-------------TEEGFQNQVL 372 (748)
Q Consensus 306 G~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~~~~~~v~~~lgv~~~~-------------~~~~~~~~~l 372 (748)
|+++||+|.+|++.++|+.+.+|+.|.+..+.+.|.++++.++|++.+......... .......+.+
T Consensus 94 G~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~ 173 (526)
T 3t37_A 94 GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAF 173 (526)
T ss_dssp BCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTTSSSSCSSCSEECBCCSTTSCHHHHHH
T ss_pred CCEECCHHHHHHCEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 44887089873398801898999999985589988813320455544422578865457689867555666678799999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHH--CCCEEECCCEEEEEEEECCCCCCCCCEEE
Q ss_conf 9999983999534688999985310056779998434632214288873--99889728689999971588887885699
Q 004496 373 RKGCENLGFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVD--NGAVILAGFKAEKFILVDNKDSIRSKKCL 450 (748)
Q Consensus 373 ~~~~~~lG~~~~~~p~n~~~~~~~g~c~~gc~~g~k~~~~~~~L~~a~~--~G~~i~~~~~V~~I~~~~~~~g~~~~~v~ 450 (748)
.+++.++|++.... .+...+..++.|...|..+.+.+...+++..+.+ .++++++++.|++|+++++ +++
T Consensus 174 ~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~~~-------~a~ 245 (526)
T 3t37_A 174 IEAGASLGLPRLEG-HNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN-------QVR 245 (526)
T ss_dssp HHHHHHTTCCBCSS-SCSSCCBSBCCCCBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEETT-------EEE
T ss_pred HHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCC-------EEE
T ss_conf 99999749974367-7777555533221002578500130112363336888759996877889985397-------477
Q ss_pred EEEEEECCCCCEEEEEEECCEEEECCCCCCCHHHHHHCCCCC---------------CCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 999984257731389997048998677788889998659999---------------95356455575415876617875
Q 004496 451 GVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPVLLAWGYIPDHV 515 (748)
Q Consensus 451 GV~~~~~~~~~~~~~~i~Ak~VVlAaGal~Sp~LLl~SGi~n---------------p~VG~nL~~Hp~~~~~g~~~~~~ 515 (748)
||++.. .+....+.||.||||||+|+||+||++|||++ |.||+||+||+......+.....
T Consensus 246 gv~~~~----~~~~~~~~a~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~ 321 (526)
T 3t37_A 246 SLEVVG----RQGSAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKP 321 (526)
T ss_dssp EEEEEE----TTEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSC
T ss_pred EEEEEE----CCCEEEEEECCEEECCCCCCCCCHHHHCCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 899984----3853999605168755552786111214688656652048873760875454446653243258852677
Q ss_pred CCCCCCCCCCCCEEEEECCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCEEEE
Q ss_conf 3335666689717683012456-765520102798884110034788520489999973287268999754179965894
Q 004496 516 SELKGKTFEGGIITSIHKVVSE-DSKVQAIIESPAMGPASFAASFPWISGRELKDRMLRYGRIAQLFALVRDQGSGEVKV 594 (748)
Q Consensus 516 ~~~~~~~~~gg~~t~~~~~~~~-~~~~~~~~e~~~~~p~~~~~~~pw~~g~~~k~~~~~~~~~~~~~~l~rd~~~G~V~~ 594 (748)
. ................+ +...+ .+.+. ......++.... +.. .........++.+.+|.++|+|+.
T Consensus 322 --~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~p~srG~v~~ 389 (526)
T 3t37_A 322 --V--PPSRLQHSESMAYMRADSFTAAG----QPEIV--VGCGVAPIVSES-FPA-PAAGSAYSLLFGITHPTSRGSVRI 389 (526)
T ss_dssp --C--CCCSSCSEEEEEEECSSCSSCCS----SCCEE--EEEESSCCCCTT-SCC-CCTTSEEEEEEEESSCCCCBEEEC
T ss_pred --C--CHHHHCCHHHHHHHHCCCCCCCC----CCCEE--EECCCCCCCCCC-CCC-CCCCCCEEEECCCCCCCCCCCCEE
T ss_conf --6--66763003455565336544568----86546--521436410133-445-667761222101257654686122
Q ss_pred -------EEEEE--ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf -------10184--05995359999999999999999808731155-457997432258995799999985455158778
Q 004496 595 -------EGKIK--YRLSKNDKENLKTGLRQALRILIAAGAEEVGT-YRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMAS 664 (748)
Q Consensus 595 -------~p~i~--y~~s~~D~~~l~~g~~~~~~i~~~~Ga~~i~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~ 664 (748)
.|.|+ |..++.|++.+.++++.+++|+.......+.. ...++. ..+++++++|+++..
T Consensus 390 ~s~dp~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~~~~pg~-----~~~~~~~~~~ir~~~------- 457 (526)
T 3t37_A 390 SGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELLPGT-----PNSAAEMDDFIARSV------- 457 (526)
T ss_dssp SSSSTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEEEECSSCC-----CCSHHHHHHHHHHHE-------
T ss_pred CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCC-----CCCHHHHHHHHHHCC-------
T ss_conf 26787668245466578888999999999999999757124324552247999-----999999999999618-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89876545433433485689999996348999454208908931887789888885554999999999999
Q 004496 665 RGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKKI 735 (748)
Q Consensus 665 ~~~~~~~~~s~H~~GTcrMG~~p~~gVVD~~grv~g~~nLyV~DaSvfPt~~g~NP~lTi~AlA~~iA~~i 735 (748)
.+.+|+|||||||+|| +||||++|||||++|||||||||||+++++||++||||+|.++|++-
T Consensus 458 -------~t~~H~~GTcrMG~d~-~sVVD~~~rV~Gv~nL~VvDaSv~P~~~~~np~~ti~aiAEkaAd~~ 520 (526)
T 3t37_A 458 -------ITHHHPCGTCRMGKDP-DAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQY 520 (526)
T ss_dssp -------EECSCCBCTTCBCSST-TCSBCTTCBBTTCSSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCCCCCCCCCC-CCCCCCCCEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -------5572218020178999-92399999796889969997081518867577999999999999975
No 2
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=1.00 E-value=1 Score=518.98 Aligned_cols=476 Identities=17% Similarity=0.154 Sum_probs=333.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHH-CCCCEEEECCCCCCCCCCC---C----C-CCCCCHHHHHHHCCCEECCCCCEEEECC
Q ss_conf 2229999988049999999988-9993999955689998897---7----8-6798324554408940038995787216
Q 004496 236 KCDVVVVGSGCGGGVAAAVLAS-SGQKVLVLEKGNYFVAEDY---S----S-LEGPSMHELYESGGLLSTLDGKFMVFAG 306 (748)
Q Consensus 236 ~~DVIIVGsG~gG~vaA~~LA~-~G~~VlVLEkG~~~~~~~~---~----~-~~~~~~~~~y~~~g~~~~~~~~~~~~~G 306 (748)
+|||||||+|.+|+++|.+|++ .+++|||||+|+....... + . ...+.+.|.|.+.++....++.+.+.+|
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~~~~r~~~~~rG 81 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGYNGRSIAYPRG 81 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGGGTTCCCBCCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 86789989867999999999748698589981687666897565765577745897545663334578779943743478
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC--------C--------------CCC
Q ss_conf 712552252002321388267765432049998792545799997534148678--------8--------------765
Q 004496 307 SAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTE--------H--------------CTE 364 (748)
Q Consensus 307 ~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~~~~~~v~~~lgv~~--------~--------------~~~ 364 (748)
+++||+|.+|++++.|+.+.+|+.|.+..|.+.|.++++.++|.+.+....... + ...
T Consensus 82 k~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~ 161 (566)
T 3fim_B 82 RMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGF 161 (566)
T ss_dssp CBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEBSCSS
T ss_pred CEECCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 07767561343488449989999898638999968779999999875247864100145667810047899855646998
Q ss_pred CCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHC-CCEEECCCEEEEEEEECCC
Q ss_conf 764579999999983--9995346889999853100567799984346322142888739-9889728689999971588
Q 004496 365 EGFQNQVLRKGCENL--GFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDN-GAVILAGFKAEKFILVDNK 441 (748)
Q Consensus 365 ~~~~~~~l~~~~~~l--G~~~~~~p~n~~~~~~~g~c~~gc~~g~k~~~~~~~L~~a~~~-G~~i~~~~~V~~I~~~~~~ 441 (748)
.......+.++++++ |++... +.|.+...++++|...+..+.|.++..+||..+.++ +++|++++.|+||+++...
T Consensus 162 ~~~~~~~~~~a~~~~~~G~~~~~-d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~ 240 (566)
T 3fim_B 162 PTPLDDRVLATTQEQSEEFFFNP-DMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTT 240 (566)
T ss_dssp CCTHHHHHHHHHHHTHHHHCBCS-CGGGSCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCEEEEEEEECCCCEECCHHHHHHHHHCCCCCEEEECCCEEEEEEEECCC
T ss_conf 77789999999999854998667-88789863488402331899774799998666435998599779799999960578
Q ss_pred CCCCCCEEEEEEEEECCCCCE-EEEEEEC-CEEEECCCCCCCHHHHHHCCCCC---------------CCCCCCCCCCCC
Q ss_conf 887885699999984257731-3899970-48998677788889998659999---------------953564555754
Q 004496 442 DSIRSKKCLGVTATALNKNVT-RKLQIKA-KATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPV 504 (748)
Q Consensus 442 ~g~~~~~v~GV~~~~~~~~~~-~~~~i~A-k~VVlAaGal~Sp~LLl~SGi~n---------------p~VG~nL~~Hp~ 504 (748)
++ .++|+||++.. ..+ +..+++| |+||||||+|+||+||++|||++ |.||+||+||+.
T Consensus 241 ~g--~~rA~GVe~~~---~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~~ 315 (566)
T 3fim_B 241 NG--LPAFRCVEYAE---QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLL 315 (566)
T ss_dssp TT--EEECCEEEEES---STTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEE
T ss_pred CC--CCEEEEEEEEE---CCCCEEEEEEEEEEEEEECCCCCCHHHHHHCCCCCHHHHHHCCCCCEECCCCHHHHHHCCCC
T ss_conf 99--98899999997---99956899984208999168768859997567998677753588705158542136545866
Q ss_pred CEEEEECCCCC--CCC-CC--------CCC---CCCCEEE-------EECCCCCCCCCCCEECC-C-CCCCCCCCCCCCC
Q ss_conf 15876617875--333-56--------666---8971768-------30124567655201027-9-8884110034788
Q 004496 505 LLAWGYIPDHV--SEL-KG--------KTF---EGGIITS-------IHKVVSEDSKVQAIIES-P-AMGPASFAASFPW 561 (748)
Q Consensus 505 ~~~~g~~~~~~--~~~-~~--------~~~---~gg~~t~-------~~~~~~~~~~~~~~~e~-~-~~~p~~~~~~~pw 561 (748)
+.+.-...... ... .. ..| ..|++++ +.........+...... . ...|.....+.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~ 395 (566)
T 3fim_B 316 LPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQ 395 (566)
T ss_dssp ECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSCSEEEEECCCTTCGGGGTSCCCSSSTTSCSEEEEEESS
T ss_pred CEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 40799967886640110375789999999986598774147332036621562012344311333357998879995156
Q ss_pred CCCHHHHHHHHHCCC-EEEEEEEEEECCCCEEEE-------EEEE--EECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 520489999973287-268999754179965894-------1018--405995359999999999999999808731155
Q 004496 562 ISGRELKDRMLRYGR-IAQLFALVRDQGSGEVKV-------EGKI--KYRLSKNDKENLKTGLRQALRILIAAGAEEVGT 631 (748)
Q Consensus 562 ~~g~~~k~~~~~~~~-~~~~~~l~rd~~~G~V~~-------~p~i--~y~~s~~D~~~l~~g~~~~~~i~~~~Ga~~i~~ 631 (748)
....... .....+ ......+++|.|+|+|++ .|.| +|..++.|++.+.++++.+++|+...+...+..
T Consensus 396 ~~~~~~~--~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~ 473 (566)
T 3fim_B 396 WFHPAIP--RPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVI 473 (566)
T ss_dssp CCCTTSC--CCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGTTTEE
T ss_pred CHHHCCC--CCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 2110356--78888779999960677655278813899888945634548882279999999999999970865577554
Q ss_pred -CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCEEECC
Q ss_conf -4579974322589957999999854551587788987654543343348568999999-63489994542089089318
Q 004496 632 -YRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEED-GAVDENGESWEAEGLFVCDG 709 (748)
Q Consensus 632 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~s~H~~GTcrMG~~p~~-gVVD~~grv~g~~nLyV~Da 709 (748)
...++ .....+|+++++|+++.. .+.+|++||||||.+++. +|||+++||||++||||+||
T Consensus 474 ~~~~P~---~~~~~sd~~~~~~ir~~~--------------~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDa 536 (566)
T 3fim_B 474 RPFDPR---LRDPTDDAAIESYIRDNA--------------NTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDG 536 (566)
T ss_dssp EESSGG---GSCTTCHHHHHHHHHHHC--------------EECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSG
T ss_pred CCCCCC---CCCCCCHHHHHHHHHHCC--------------CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCC
T ss_conf 345888---655443689999876066--------------624554574014886568831999984826798377643
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 877898888855549999999999999
Q 004496 710 SVLPSAIGINPMITIESTSYCISKKIA 736 (748)
Q Consensus 710 SvfPt~~g~NP~lTi~AlA~~iA~~ia 736 (748)
||||+.+++||+.|+||+|.++|+.|.
T Consensus 537 Sv~P~~~~~n~~~~~~~iaekaAd~I~ 563 (566)
T 3fim_B 537 SILPFAPNAHTQGPIYLVGKQGADLIK 563 (566)
T ss_dssp GGCCSCCSSCTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 327788886748999999999999985
No 3
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=1.00 E-value=1 Score=509.54 Aligned_cols=474 Identities=17% Similarity=0.166 Sum_probs=336.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH-CCCCEEEECCCCCCCCCC----CC----CCCCCCHHHHHHHCCCEECCCCCEEEE
Q ss_conf 742229999988049999999988-999399995568999889----77----867983245544089400389957872
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLAS-SGQKVLVLEKGNYFVAED----YS----SLEGPSMHELYESGGLLSTLDGKFMVF 304 (748)
Q Consensus 234 ~~~~DVIIVGsG~gG~vaA~~LA~-~G~~VlVLEkG~~~~~~~----~~----~~~~~~~~~~y~~~g~~~~~~~~~~~~ 304 (748)
..+||+||||+|.+|+++|.+|++ .|++|+|||+|....... .+ ....+.+.|.|.+.+ ...+..+.+.
T Consensus 22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--~~~~~~~~~~ 99 (587)
T 1gpe_A 22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--LINNRTNNIK 99 (587)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--CTTSCCCEEC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC--CCCCCEEEEE
T ss_conf 66079899896799999999998478983899956886678964210723576524986431132246--7799665421
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC---------CC-------------
Q ss_conf 16712552252002321388267765432049998792545799997534148678---------87-------------
Q 004496 305 AGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTE---------HC------------- 362 (748)
Q Consensus 305 ~G~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~~~~~~v~~~lgv~~---------~~------------- 362 (748)
+|+++||+|.+|++.+.|+.+.+|+.|....|.+.|.++++.++|++++..++++. +.
T Consensus 100 rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~v~~ 179 (587)
T 1gpe_A 100 AGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGA 179 (587)
T ss_dssp CBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEBC
T ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 34222566435364996199899999998659999797899999999850368763211246666743357799988714
Q ss_pred ----CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCCCCCHHHHHH-CCCEEECCCEEEEEE
Q ss_conf ----6576457999999998399953468899998531005677-9998434632214288873-998897286899999
Q 004496 363 ----TEEGFQNQVLRKGCENLGFKVESVARNTPEEHYCGSCNYG-CRTGDKKGTDVTWLVDAVD-NGAVILAGFKAEKFI 436 (748)
Q Consensus 363 ----~~~~~~~~~l~~~~~~lG~~~~~~p~n~~~~~~~g~c~~g-c~~g~k~~~~~~~L~~a~~-~G~~i~~~~~V~~I~ 436 (748)
.......+.+.++++++|++... +.|...+.+|++|... |..+.|+++..+||..+.+ .+++|++++.|++|+
T Consensus 180 ~~~~~~~~~~~~~~~~a~~~~G~~~~~-d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l~ 258 (587)
T 1gpe_A 180 RDNGQPWSPIMKALMNTVSALGVPVQQ-DFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVL 258 (587)
T ss_dssp CCCSSCBCTHHHHHHHHHHHTTCCBSC-CTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCEEEEEE
T ss_conf 777677887999999999976999678-9889987778863467779985347899998776107995898188999999
Q ss_pred EECCCCCCCCCEEEEEEEEECCCCCEEEEEEEC-CEEEECCCCCCCHHHHHHCCCCC---------------CCCCCCCC
Q ss_conf 715888878856999999842577313899970-48998677788889998659999---------------95356455
Q 004496 437 LVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMISSGLEN---------------PNIGTNLH 500 (748)
Q Consensus 437 ~~~~~~g~~~~~v~GV~~~~~~~~~~~~~~i~A-k~VVlAaGal~Sp~LLl~SGi~n---------------p~VG~nL~ 500 (748)
++++++ +.+|+||++.+ ..++..+|+| |.||||||+++||+||++|||++ | ||+||+
T Consensus 259 ~~~~~~---~~~~~GV~~~~---~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlP-VG~nL~ 331 (587)
T 1gpe_A 259 FKQTAS---GPQAVGVNFGT---NKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQ 331 (587)
T ss_dssp EEEETT---EEEEEEEEEEE---ETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECC-TTCSBB
T ss_pred ECCCCC---CCEEEEEEEEE---CCCCEEEEEECCCEEECCCCCCCHHHHHHCCCCCHHHHHHCCCCEEEECC-CCCCHH
T ss_conf 778888---87799999992---79928999953558973588798899976899988899767997677588-775620
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCC--CCCCEECCCCCCCCCCCCCC------CCCC--CHHHHHH
Q ss_conf 575415876617875333566668971768301245676--55201027988841100347------8852--0489999
Q 004496 501 LHPVLLAWGYIPDHVSELKGKTFEGGIITSIHKVVSEDS--KVQAIIESPAMGPASFAASF------PWIS--GRELKDR 570 (748)
Q Consensus 501 ~Hp~~~~~g~~~~~~~~~~~~~~~gg~~t~~~~~~~~~~--~~~~~~e~~~~~p~~~~~~~------pw~~--g~~~k~~ 570 (748)
||+...+...+++... .+. ... ........+. ..|.. .........+.... +... ..+++..
T Consensus 332 DH~~~~~~~~~~~~~~-----~~~-~~~-~~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (587)
T 1gpe_A 332 DQTTTTVSSRASSAGA-----GQG-QAV-FFANFTETFGDYAPQAR-DLLNTKLDQWAEETVARGGFHNVTALKVQYENY 403 (587)
T ss_dssp CCEEEEEEEEECGGGC-----SBC-EEE-EEEEHHHHHGGGHHHHH-HHHHHSHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCC-----CCC-CHH-HHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 2855415898278866-----654-467-79999999984799775-345101004760454445555411136208887
Q ss_pred HHH-----CC----------CEEEEEEEEEECCCCEEEE-------EE-EE--EECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 973-----28----------7268999754179965894-------10-18--405995359999999999999999808
Q 004496 571 MLR-----YG----------RIAQLFALVRDQGSGEVKV-------EG-KI--KYRLSKNDKENLKTGLRQALRILIAAG 625 (748)
Q Consensus 571 ~~~-----~~----------~~~~~~~l~rd~~~G~V~~-------~p-~i--~y~~s~~D~~~l~~g~~~~~~i~~~~G 625 (748)
+.. +. .....+.+++|.++|+|++ .| .| +|..++.|++.+.++++.+++|+...+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~ 483 (587)
T 1gpe_A 404 RNWLLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGA 483 (587)
T ss_dssp HHHHHHSCCEEEEEEEECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 41025888764046533788279998745776540688479985558327612657984799999999999999973943
Q ss_pred CCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 7311554-579974322589957999999854551587788987654543343348568999999634899945420890
Q 004496 626 AEEVGTY-RSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGL 704 (748)
Q Consensus 626 a~~i~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~s~H~~GTcrMG~~p~~gVVD~~grv~g~~nL 704 (748)
+..+... ..+++.. ....+|+++++|++.. ..+++|++||||||.+|++||||+++||||++||
T Consensus 484 ~~~~~~~~~~pg~~~-~~~~sd~~~~~~ir~~--------------~~t~~H~~GTcrMG~~~~~sVVD~~lrV~Gv~nL 548 (587)
T 1gpe_A 484 MKEYFAGETLPGYNL-VQNATLSQWSDYVLQN--------------FRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGL 548 (587)
T ss_dssp HHHHEEEEEESGGGS-CTTCCHHHHHHHHHHS--------------CEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSE
T ss_pred HHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHH--------------CCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCC
T ss_conf 143124665788535-6789999999999973--------------6716575675225898889418999879788993
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 893188778988888555499999999999999985
Q 004496 705 FVCDGSVLPSAIGINPMITIESTSYCISKKIADSLK 740 (748)
Q Consensus 705 yV~DaSvfPt~~g~NP~lTi~AlA~~iA~~ia~~l~ 740 (748)
||+||||||+.+++||++|+||+|.|+|+.|.+..+
T Consensus 549 rVvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~~~ 584 (587)
T 1gpe_A 549 RVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584 (587)
T ss_dssp EECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 783544577788862689999999999999976640
No 4
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=1.00 E-value=1 Score=503.13 Aligned_cols=464 Identities=18% Similarity=0.231 Sum_probs=337.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHC-CCCEEEECCCCCCCCCC-------CCCCCCCCHHHHHHHCCCEECCCCCEEEEC
Q ss_conf 7422299999880499999999889-99399995568999889-------778679832455440894003899578721
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEKGNYFVAED-------YSSLEGPSMHELYESGGLLSTLDGKFMVFA 305 (748)
Q Consensus 234 ~~~~DVIIVGsG~gG~vaA~~LA~~-G~~VlVLEkG~~~~~~~-------~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~ 305 (748)
..+|||||||+|.+|+++|.+|+++ |++|+|||+|....... +.....+...|.|...++.. .+..+.+.+
T Consensus 11 ~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-~~~~~~~~r 89 (546)
T 2jbv_A 11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-GNSFMRHAR 89 (546)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-SCTTCEECC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC-CCCEEEEEC
T ss_conf 3748989989678999999999867899789994688678885320765677612886655524112578-995577423
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC---------C-----CCCCCHHHHH
Q ss_conf 6712552252002321388267765432049998792545799997534148678---------8-----7657645799
Q 004496 306 GSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTE---------H-----CTEEGFQNQV 371 (748)
Q Consensus 306 G~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~~~~~~v~~~lgv~~---------~-----~~~~~~~~~~ 371 (748)
|+++||+|.+|++.+.|..+.+|+.|.+..|.+.|.++++.++|++++..++... . ........+.
T Consensus 90 Gk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~ 169 (546)
T 2jbv_A 90 AKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVA 169 (546)
T ss_dssp BCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 61246675665529963998999999986599998978999999987632588886444788998887148877879999
Q ss_pred HHHHHHHCCCCCCCCCCCCCC--CCCCEECCCCCC-CCCCCCCCCCCHHHHHH-CCCEEECCCEEEEEEEECCCCCCCCC
Q ss_conf 999999839995346889999--853100567799-98434632214288873-99889728689999971588887885
Q 004496 372 LRKGCENLGFKVESVARNTPE--EHYCGSCNYGCR-TGDKKGTDVTWLVDAVD-NGAVILAGFKAEKFILVDNKDSIRSK 447 (748)
Q Consensus 372 l~~~~~~lG~~~~~~p~n~~~--~~~~g~c~~gc~-~g~k~~~~~~~L~~a~~-~G~~i~~~~~V~~I~~~~~~~g~~~~ 447 (748)
+.++++++|++.. +.|... +.+|++|..+|. .+.|.++..+||..+.+ .|++|++++.|++|++++++
T Consensus 170 ~~~a~~~~G~~~~--d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~------ 241 (546)
T 2jbv_A 170 LLDACEQAGIPRA--KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR------ 241 (546)
T ss_dssp HHHHHHHTTCCBC--CSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTTS------
T ss_pred HHHHHHHCCCCCC--CCCCCCCCCCEEEEEEEECCCCCEECCHHHHHHHHHHCCCCCEEEECCEEEEEEECCCC------
T ss_conf 9999997799856--78888767613886322117997275899999998723899389948889999988998------
Q ss_pred EEEEEEEEECCCCCEEEEEEECC-EEEECCCCCCCHHHHHHCCCCC---------------CCCCCCCCCCCCCEEEEEC
Q ss_conf 69999998425773138999704-8998677788889998659999---------------9535645557541587661
Q 004496 448 KCLGVTATALNKNVTRKLQIKAK-ATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPVLLAWGYI 511 (748)
Q Consensus 448 ~v~GV~~~~~~~~~~~~~~i~Ak-~VVlAaGal~Sp~LLl~SGi~n---------------p~VG~nL~~Hp~~~~~g~~ 511 (748)
+++||++.. ..+++..+|+|+ .||||||+++||+||++|||++ |.||+||+||+...+...+
T Consensus 242 ~~~GV~~~~--~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~~~~~~~ 319 (546)
T 2jbv_A 242 RCTGVDIVD--SAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEA 319 (546)
T ss_dssp BEEEEEEES--STTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEECCEEEEE
T ss_pred EEEEEEEEE--CCCCCEEEEEECCCEEEECCCCCCCHHHHHCCCCCHHHHHHCCCCEEEECCCHHHHHHHCCCCEEEEEE
T ss_conf 099999997--789948999937608983676588044654589866778766995586383244505637243189980
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC---HHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 78753335666689717683012456765520102798884110034788520---489999973287268999754179
Q 004496 512 PDHVSELKGKTFEGGIITSIHKVVSEDSKVQAIIESPAMGPASFAASFPWISG---RELKDRMLRYGRIAQLFALVRDQG 588 (748)
Q Consensus 512 ~~~~~~~~~~~~~gg~~t~~~~~~~~~~~~~~~~e~~~~~p~~~~~~~pw~~g---~~~k~~~~~~~~~~~~~~l~rd~~ 588 (748)
++.... ......-...+....... .. |.....+.|+... ...... .........+.+.+|.+
T Consensus 320 ~~~~~~---~~~~~~~~~~f~~~~~~~-------~~----p~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~P~s 384 (546)
T 2jbv_A 320 KQPMVA---ESTQWWEIGIFTPTEDGL-------DR----PDLMMHYGSVPFDMNTLRHGYP-TTENGFSLTPNVTHARS 384 (546)
T ss_dssp SSCCCS---CCSSSCCEEEEECSSTTC-------SS----CSEEEEEESSCCCTTTGGGTCC-CCSSEEEEEEEETTCCC
T ss_pred CCCCCC---CCCCHHHEEEEEECCCCC-------CC----CCEEEEECCCCCCCCCCCCCCC-CCCCEEEEEEEECCCCC
T ss_conf 688763---335601058998369877-------88----7669995143122335666766-78885899989746676
Q ss_pred CCEEEE-------EEEE--EECCCHH--HHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 965894-------1018--4059953--59999999999999999808731155-4579974322589957999999854
Q 004496 589 SGEVKV-------EGKI--KYRLSKN--DKENLKTGLRQALRILIAAGAEEVGT-YRSDGHRIRCKGIKEEDLEEFIGSI 656 (748)
Q Consensus 589 ~G~V~~-------~p~i--~y~~s~~--D~~~l~~g~~~~~~i~~~~Ga~~i~~-~~~~~~~~~~~~~~d~~~~~~~~~~ 656 (748)
+|+|++ .|.| +|..++. |++.+.++++.+.+|+...++..+.. ...+++ ...+|+++++|++..
T Consensus 385 rG~V~L~s~dp~~~P~I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~----~~~sd~~~~~~ir~~ 460 (546)
T 2jbv_A 385 RGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGV----EAQTDEELQDYIRKT 460 (546)
T ss_dssp CBEEECSSSCTTSCCEEECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTTTEEEEEESCT----TCCSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCC----CCCCHHHHHHHHHHC
T ss_conf 5179855899878955621015798355899999999999999749330220440136898----889999999999963
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55158778898765454334334856899-99996348999454208908931887789888885554999999999999
Q 004496 657 EVVGGMASRGEHWSVYFSAHQMGSCRMGA-TEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKKI 735 (748)
Q Consensus 657 ~~~~g~~~~~~~~~~~~s~H~~GTcrMG~-~p~~gVVD~~grv~g~~nLyV~DaSvfPt~~g~NP~lTi~AlA~~iA~~i 735 (748)
. .+++|++||||||. ++.+||||+++||||++||||+||||||+++++||++||||+|.|+|+.|
T Consensus 461 ~--------------~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I 526 (546)
T 2jbv_A 461 H--------------NTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLI 526 (546)
T ss_dssp C--------------EECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHC
T ss_pred C--------------CCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7--------------86634556204688789994089998797789829835045887888632899999999999998
Q ss_pred HHHHHH
Q ss_conf 999851
Q 004496 736 ADSLKK 741 (748)
Q Consensus 736 a~~l~~ 741 (748)
.+....
T Consensus 527 ~~~~~~ 532 (546)
T 2jbv_A 527 RSARAG 532 (546)
T ss_dssp ------
T ss_pred HHHCCC
T ss_conf 742446
No 5
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=1.00 E-value=1 Score=500.10 Aligned_cols=476 Identities=18% Similarity=0.204 Sum_probs=323.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHC-CCCEEEECCCCCCCC--------CCCCCCCCCCHHHHHHHCCCEECCCCCEEE
Q ss_conf 67422299999880499999999889-993999955689998--------897786798324554408940038995787
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASS-GQKVLVLEKGNYFVA--------EDYSSLEGPSMHELYESGGLLSTLDGKFMV 303 (748)
Q Consensus 233 ~~~~~DVIIVGsG~gG~vaA~~LA~~-G~~VlVLEkG~~~~~--------~~~~~~~~~~~~~~y~~~g~~~~~~~~~~~ 303 (748)
...+|||||||+|.+|+++|.+|+|. +.+|||||+|++... ..+.....+.+.|.|.+..+ ...++.+.+
T Consensus 16 ~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q-~~~~r~~~~ 94 (583)
T 3qvp_A 16 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL-ATNNQTALI 94 (583)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCC-TTTSCCCEE
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECHHHHHHHCCCCCCCCCCCCCC-CCCCCEEEC
T ss_conf 8777648998986799999999984879848997057777778865446545776347766677466666-789970322
Q ss_pred ECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC------------------------CC
Q ss_conf 216712552252002321388267765432049998792545799997534148------------------------67
Q 004496 304 FAGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIG------------------------VT 359 (748)
Q Consensus 304 ~~G~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~~~~~~v~~~lg------------------------v~ 359 (748)
.+|+++||+|.+|.+.+.|+.+.+|+.|....+.+.|.++++.++|++.+.... ++
T Consensus 95 ~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~v~ 174 (583)
T 3qvp_A 95 RSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAG 174 (583)
T ss_dssp CCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEEB
T ss_pred CCCEECCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCEEEC
T ss_conf 17456278676664489719989987899747998978467999999997326885011013566784325789997723
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCCCCHHHHHHC-CCEEECCCEEEEE
Q ss_conf 88--765764579999999983999534688999985310056779-9984346322142888739-9889728689999
Q 004496 360 EH--CTEEGFQNQVLRKGCENLGFKVESVARNTPEEHYCGSCNYGC-RTGDKKGTDVTWLVDAVDN-GAVILAGFKAEKF 435 (748)
Q Consensus 360 ~~--~~~~~~~~~~l~~~~~~lG~~~~~~p~n~~~~~~~g~c~~gc-~~g~k~~~~~~~L~~a~~~-G~~i~~~~~V~~I 435 (748)
.. ........+.+.++++++|++... +.|.+...+++++.... +.|.|.++..+||..+.++ +++|++++.|+||
T Consensus 175 ~~~~~~~~~~~~~~~~~a~~~~G~~~~~-D~n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~rI 253 (583)
T 3qvp_A 175 PRDTGDDYSPIVKALMSAVEDRGVPTKK-DFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKV 253 (583)
T ss_dssp CCCCSSCBCTHHHHHHHHHHTTTCCBCC-CTTSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCEECCCCEEECCCCCEECHHHHHHHHHHCCCCCEEECCCEEEEE
T ss_conf 7777656787999999999976999677-888898761411442276999585389988877622798089817889999
Q ss_pred EEECCCCCCCCCEEEEEEEEECCCCCEEEEEEEC-CEEEECCCCCCCHHHHHHCCCCC---------------CCCCCCC
Q ss_conf 9715888878856999999842577313899970-48998677788889998659999---------------9535645
Q 004496 436 ILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMISSGLEN---------------PNIGTNL 499 (748)
Q Consensus 436 ~~~~~~~g~~~~~v~GV~~~~~~~~~~~~~~i~A-k~VVlAaGal~Sp~LLl~SGi~n---------------p~VG~nL 499 (748)
++++.+. +++|+||++.. ..++..+++| |+||||||+|+||+|||+|||++ | ||+||
T Consensus 254 l~d~~~~---~~ra~GV~~~~---~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLP-VG~NL 326 (583)
T 3qvp_A 254 LLSQNGT---TPRAVGVEFGT---HKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNL 326 (583)
T ss_dssp EEECSSS---SCEEEEEEEES---STTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCC-TTCCB
T ss_pred EECCCCC---CCEEEEEEEEE---CCCCEEEEEECCEEEEECCCCCCHHHHHHCCCCCHHHHHHCCCCCEEECC-CCCCH
T ss_conf 9616788---98799999995---39968999978799993774388999987589987889767997153176-22252
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC----CEECCCCCCC--CCCCCCCCCCCCHHHH-----
Q ss_conf 5575415876617875333566668971768301245676552----0102798884--1100347885204899-----
Q 004496 500 HLHPVLLAWGYIPDHVSELKGKTFEGGIITSIHKVVSEDSKVQ----AIIESPAMGP--ASFAASFPWISGRELK----- 568 (748)
Q Consensus 500 ~~Hp~~~~~g~~~~~~~~~~~~~~~gg~~t~~~~~~~~~~~~~----~~~e~~~~~p--~~~~~~~pw~~g~~~k----- 568 (748)
+||+.+.+........ ... .....+........... ..+... ..+ ........+....++.
T Consensus 327 qDH~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (583)
T 3qvp_A 327 QDQTTATVRSRITSAG-----AGQ--GQAAWFATFNETFGDYSEKAHELLNTK-LEQWAEEAVARGGFHNTTALLIQYEN 398 (583)
T ss_dssp BCCEEEEEEEEECGGG-----CSB--CEEEEEEEHHHHHGGGHHHHHHHHHHC-HHHHHHHHHHTTSCSCHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCC-----CCC--CCCCCCCCHHHHHCCCHHHHHHHHHHH-CCHHHCCCCCCCCCCCCHHHHHHHCC
T ss_conf 3175620799966776-----665--431135657776252067899999740-31221253224674665777765301
Q ss_pred --HHHHH-----------CC-CEEEEEEEEEECCCCEEEE-------EEEE---EECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf --99973-----------28-7268999754179965894-------1018---40599535999999999999999980
Q 004496 569 --DRMLR-----------YG-RIAQLFALVRDQGSGEVKV-------EGKI---KYRLSKNDKENLKTGLRQALRILIAA 624 (748)
Q Consensus 569 --~~~~~-----------~~-~~~~~~~l~rd~~~G~V~~-------~p~i---~y~~s~~D~~~l~~g~~~~~~i~~~~ 624 (748)
+.+.. +. .....+..++|.++|+|++ .|.| +|..++.|++.+.++++.+++|+...
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~~~~ 478 (583)
T 3qvp_A 399 YRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSG 478 (583)
T ss_dssp HHHHHHHSCCEEEEEEEECTTSEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTST
T ss_pred CHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 02221257887311331268974265655353775089954899887960155887799899999999999999998375
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 8731155-457997432258995799999985455158778898765454334334856899999963489994542089
Q 004496 625 GAEEVGT-YRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEG 703 (748)
Q Consensus 625 Ga~~i~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~s~H~~GTcrMG~~p~~gVVD~~grv~g~~n 703 (748)
+...+.. ...++... ....+|+++++|++... .+.+|++||||||.++..+|||+++||||++|
T Consensus 479 ~~~~~~~~~~~pg~~~-~~~~sd~~~~~~~r~~~--------------~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~ 543 (583)
T 3qvp_A 479 AMQTYFAGETIPGDNL-AYDADLSAWTEYIPYHF--------------RPNYHGVGTCSMMPKEMGGVVDNAARVYGVQG 543 (583)
T ss_dssp THHHHEEEEEESGGGS-CTTCCHHHHHHHGGGSC--------------EECSCCBCTTCBSCGGGTCSBCTTCBBTTCBS
T ss_pred CHHHCCCCCCCCCCCC-CCCCCHHHHHHHHHHCC--------------CCCCCCCCCEECCCCCCCCEECCCCEEECCCC
T ss_conf 5121245433798434-66799899999998525--------------77767777503789899865999996916799
Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0893188778988888555499999999999999985
Q 004496 704 LFVCDGSVLPSAIGINPMITIESTSYCISKKIADSLK 740 (748)
Q Consensus 704 LyV~DaSvfPt~~g~NP~lTi~AlA~~iA~~ia~~l~ 740 (748)
|||+||||||+.+++||+.|++|+|.++|+.|.+...
T Consensus 544 LrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~~ 580 (583)
T 3qvp_A 544 LRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYA 580 (583)
T ss_dssp EEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5992155277898867699999999999999997643
No 6
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=1.00 E-value=1 Score=491.01 Aligned_cols=470 Identities=17% Similarity=0.189 Sum_probs=312.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCC-CCEEEECCCCCCCCC--------CCCCCCCCCHHHHHHHCCCEECCCCCEE--
Q ss_conf 74222999998804999999998899-939999556899988--------9778679832455440894003899578--
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSG-QKVLVLEKGNYFVAE--------DYSSLEGPSMHELYESGGLLSTLDGKFM-- 302 (748)
Q Consensus 234 ~~~~DVIIVGsG~gG~vaA~~LA~~G-~~VlVLEkG~~~~~~--------~~~~~~~~~~~~~y~~~g~~~~~~~~~~-- 302 (748)
..+|||||||+|.+|+++|.+|++.| .+|||||+|+..... .+.....+.+.|.|.+. ..+....
T Consensus 4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~----~~~r~~~~~ 79 (577)
T 3q9t_A 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT----MVRRDDYER 79 (577)
T ss_dssp TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEE----EEEETTEEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCHHHHHCCCCCCCCCEEEE----ECCCCCCCC
T ss_conf 7736389989858899999999738797479993677777788338880456651699765342777----888645544
Q ss_pred ----EECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC-------------CC----
Q ss_conf ----721671255225200232138826776543204999879254579999753414867-------------88----
Q 004496 303 ----VFAGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVT-------------EH---- 361 (748)
Q Consensus 303 ----~~~G~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~~~~~~v~~~lgv~-------------~~---- 361 (748)
+.+|+++||+|.+|.+.+.|+...+++.|... |.+.|.++++.+++.+.+...... +.
T Consensus 80 ~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~-G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~v~ 158 (577)
T 3q9t_A 80 IEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEF-GGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPIS 158 (577)
T ss_dssp EEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHH-HCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 455445531306742247647606997899999971-8999888999999998850578754557765557889988865
Q ss_pred --CCCC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCEEEEEEE
Q ss_conf --7657--645799999999839995346889999853100567799984346322142888739988972868999997
Q 004496 362 --CTEE--GFQNQVLRKGCENLGFKVESVARNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFIL 437 (748)
Q Consensus 362 --~~~~--~~~~~~l~~~~~~lG~~~~~~p~n~~~~~~~g~c~~gc~~g~k~~~~~~~L~~a~~~G~~i~~~~~V~~I~~ 437 (748)
.... ......+.++++++|++... +.|.+...+.+++...+..|.+.++. .++ ..+.+++|++++.|+||++
T Consensus 159 ~~~~~~~~~~~~~~~~~a~~~~G~~~~~-d~n~~~~~G~~~~~~~~~~g~R~s~~-~~l--~~r~Nl~v~~~a~v~ri~~ 234 (577)
T 3q9t_A 159 HAELIDEMAPFRENLTKAWKSMGQPLIE-NIYDGEMDGLTHCCDTIYRGQRSGSF-LFV--KNKPNITIVPEVHSKRLII 234 (577)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHTTCCBCS-CCSSSCCCEEEECEESEETTEECCGG-GGS--SSCTTEEEECSEEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCEEEEECCEECCCEEEEHH-HHH--HCCCCEEEECCCEEEEEEE
T ss_conf 7877765556999999999976998678-87789867688501301699684189-997--4499869986869999999
Q ss_pred ECCCCCCCCCEEEEEEEEECCCCCEEEEEEEC-CEEEECCCCCCCHHHHHHCCCCC---------------CCCCCCCCC
Q ss_conf 15888878856999999842577313899970-48998677788889998659999---------------953564555
Q 004496 438 VDNKDSIRSKKCLGVTATALNKNVTRKLQIKA-KATISACGSLLTPPLMISSGLEN---------------PNIGTNLHL 501 (748)
Q Consensus 438 ~~~~~g~~~~~v~GV~~~~~~~~~~~~~~i~A-k~VVlAaGal~Sp~LLl~SGi~n---------------p~VG~nL~~ 501 (748)
++.+ ++++||++.. ..++..+++| |.||||||+|+||+||++|||++ |.||+||+|
T Consensus 235 ~~~~-----~~a~GV~~~~---~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~D 306 (577)
T 3q9t_A 235 NEAD-----RTCKGVTVVT---AAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMD 306 (577)
T ss_dssp ETTT-----TEEEEEEEEE---TTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBC
T ss_pred ECCC-----CEEEEEEEEE---CCCCEEEEEEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHCCCCEECCCCHHHHHHHC
T ss_conf 6899-----9899999996---8996899994148997156227859999758998789987599700369412044520
Q ss_pred CCCCEEEEECCCCCCC----CCC--------CCC---CCCCEEE-------EECCCCCCC---CCCCEE-----C---CC
Q ss_conf 7541587661787533----356--------666---8971768-------301245676---552010-----2---79
Q 004496 502 HPVLLAWGYIPDHVSE----LKG--------KTF---EGGIITS-------IHKVVSEDS---KVQAII-----E---SP 548 (748)
Q Consensus 502 Hp~~~~~g~~~~~~~~----~~~--------~~~---~gg~~t~-------~~~~~~~~~---~~~~~~-----e---~~ 548 (748)
|+.+.+.......... +.. ..| ..|++++ +........ .+.... . .+
T Consensus 307 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (577)
T 3q9t_A 307 HPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSP 386 (577)
T ss_dssp CEEEEEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGCCSEEEEEECCCHHHHTTCHHHHHHHHHTTTSCSSCT
T ss_pred CCCEEEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEECCHHHHCCHHHHHHHHCCCCCCCCCC
T ss_conf 75303899968987654032136367899999999669977531422324775247143201123222101333334588
Q ss_pred CCCCCCCCCCCCCCCCHH-HHHHHHHCCC-EEEEEEEEEECCCC-EEEE-------EEEE--EECCCHHHHHHHHHHHHH
Q ss_conf 888411003478852048-9999973287-26899975417996-5894-------1018--405995359999999999
Q 004496 549 AMGPASFAASFPWISGRE-LKDRMLRYGR-IAQLFALVRDQGSG-EVKV-------EGKI--KYRLSKNDKENLKTGLRQ 616 (748)
Q Consensus 549 ~~~p~~~~~~~pw~~g~~-~k~~~~~~~~-~~~~~~l~rd~~~G-~V~~-------~p~i--~y~~s~~D~~~l~~g~~~ 616 (748)
...|.....+.+...... .........+ ......+++|.|+| +|++ .|.| +|..++.|++.+.++++.
T Consensus 387 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~~~D~~~~~~~~~~ 466 (577)
T 3q9t_A 387 LGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRF 466 (577)
T ss_dssp TSCCSEEEEEESSCCGGGCSSSCCCSSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 89836998860343222223566788887799998840025547779957899988966844758874279999999999
Q ss_pred HHHHH-HHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999-9808731155-457997432258995799999985455158778898765454334334856899999963489
Q 004496 617 ALRIL-IAAGAEEVGT-YRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDE 694 (748)
Q Consensus 617 ~~~i~-~~~Ga~~i~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~s~H~~GTcrMG~~p~~gVVD~ 694 (748)
+++|+ ...++.++.. ...+++. ..+|+++++|+++.. .+.+|++||||||.++++||||+
T Consensus 467 ~~~i~~~~~~~~~~~~~e~~p~~~----~~sd~~~~~~ir~~~--------------~t~~H~~GTc~Mg~~~~~~VVD~ 528 (577)
T 3q9t_A 467 SYDLLFKGEGFKDLVESEYPWEMP----LDSDKEMHRAVLDRC--------------QTAFHPTGTARLSKNIDQGVVDP 528 (577)
T ss_dssp HHHHHHHSTTGGGTEEEEESSCCC----TTCHHHHHHHHHHHC--------------EECSCCBCTTCBCSSTTTCSBCT
T ss_pred HHHHHHHCHHHHHCCCCCCCCCCC----CCCHHHHHHHHHHCC--------------CCCCCCCCCEECCCCCCCCEECC
T ss_conf 999987383356405533279987----688789999987424--------------53433446421379999833999
Q ss_pred CCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99454208908931887789888885554999999999999999
Q 004496 695 NGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKKIADS 738 (748)
Q Consensus 695 ~grv~g~~nLyV~DaSvfPt~~g~NP~lTi~AlA~~iA~~ia~~ 738 (748)
++||||++||||+||||||+.+++||+.|+||+|.++|+.|.+.
T Consensus 529 ~lrV~Gv~~LrVvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~ 572 (577)
T 3q9t_A 529 KLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572 (577)
T ss_dssp TCBBTTCBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99692789938830030669988754899999999999999866
No 7
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=1.00 E-value=1 Score=454.97 Aligned_cols=434 Identities=20% Similarity=0.233 Sum_probs=308.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCC-----CCCCCCC--CCCHHHHHHHCCC------------
Q ss_conf 67422299999880499999999889993999955689998-----8977867--9832455440894------------
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA-----EDYSSLE--GPSMHELYESGGL------------ 293 (748)
Q Consensus 233 ~~~~~DVIIVGsG~gG~vaA~~LA~~G~~VlVLEkG~~~~~-----~~~~~~~--~~~~~~~y~~~g~------------ 293 (748)
...+||+||||+|.+|+++|.+|++.|++|+|||+|..... ..+.... .+...|.|...++
T Consensus 8 ~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~~~ 87 (507)
T 1coy_A 8 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINK 87 (507)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67767789989799999999999978991899978898897777656665554555434446544534322212334555
Q ss_pred ---EEC------CCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHCCCCCCCC
Q ss_conf ---003------89957872167125522520023213882677654320499987925457-99997534148678876
Q 004496 294 ---LST------LDGKFMVFAGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYR-AAMDKVSKRIGVTEHCT 363 (748)
Q Consensus 294 ---~~~------~~~~~~~~~G~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~-~~~~~v~~~lgv~~~~~ 363 (748)
... .+..+.+.+|+++||+|.+|++.++|+.+.+|+.|.. .+.++++. ++|++++..++++....
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~-----~w~~~~l~~pyy~~~E~~~~~~~~~~ 162 (507)
T 1coy_A 88 SIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILP-----SVDSNEMYNKYFPRANTGLGVNNIDQ 162 (507)
T ss_dssp BCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT-----TSCHHHHHHTHHHHHHHHHTCBCCCH
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCHHHHHHCEEEEECCHHHHHHHCC-----CCCHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 5566654056741798689985331268774172774589899975487-----52111001179999999709888887
Q ss_pred CC------CHHHHHHHHHHHHCCCCCCCCCCC-------------CCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHCC-
Q ss_conf 57------645799999999839995346889-------------9998531005677999843463221428887399-
Q 004496 364 EE------GFQNQVLRKGCENLGFKVESVARN-------------TPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNG- 423 (748)
Q Consensus 364 ~~------~~~~~~l~~~~~~lG~~~~~~p~n-------------~~~~~~~g~c~~gc~~g~k~~~~~~~L~~a~~~G- 423 (748)
.. ....+.+.++++++|++....|.+ ...|..||+|..+|..| |+++..+||..+.+++
T Consensus 163 ~~~~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~~~~l~~a~~~~n 241 (507)
T 1coy_A 163 AWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLDKTYLAQAAATGK 241 (507)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTTTTHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCC
T ss_conf 54566643328899999999828987667742014764545777446762256665668888-82738889999986699
Q ss_pred CEEECCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCC-EEEEEEECCEEEECCCCCCCHHHHHHCC-CC---C--CCCC
Q ss_conf 88972868999997158888788569999998425773-1389997048998677788889998659-99---9--9535
Q 004496 424 AVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNV-TRKLQIKAKATISACGSLLTPPLMISSG-LE---N--PNIG 496 (748)
Q Consensus 424 ~~i~~~~~V~~I~~~~~~~g~~~~~v~GV~~~~~~~~~-~~~~~i~Ak~VVlAaGal~Sp~LLl~SG-i~---n--p~VG 496 (748)
++|++++.|++|++++++ ++++||++... .+. ++..+++|+.||||||+++||+||++|| ++ | ++||
T Consensus 242 ~~i~~~~~v~~i~~~~~g-----~~~~gV~~~~~-~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg~iG~lpnl~d~VG 315 (507)
T 1coy_A 242 LTITTLHRVTKVAPATGS-----GYSVTMEQIDE-QGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVG 315 (507)
T ss_dssp EEEECSEEEEEEEECSSS-----SEEEEEEEECT-TSCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTSCTTTT
T ss_pred CEEEECCEEEEEEECCCC-----CEEEEEEEECC-CCCCCCCEEEEECEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHC
T ss_conf 689827889899988999-----77999999478-886354189992989985575577999985664799886573447
Q ss_pred CCCCCCCCCEE-EEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 64555754158-76617875333566668971768301245676552010279888411003478852048999997328
Q 004496 497 TNLHLHPVLLA-WGYIPDHVSELKGKTFEGGIITSIHKVVSEDSKVQAIIESPAMGPASFAASFPWISGRELKDRMLRYG 575 (748)
Q Consensus 497 ~nL~~Hp~~~~-~g~~~~~~~~~~~~~~~gg~~t~~~~~~~~~~~~~~~~e~~~~~p~~~~~~~pw~~g~~~k~~~~~~~ 575 (748)
+||++|+.... ++.+.... . .++.++..+.......+ ... |.... ..+|..+. . .
T Consensus 316 ~~l~~h~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~-~~~----------~~~~~-~~~~~~~~-------~-~ 371 (507)
T 1coy_A 316 EGWGNNGNIMVGRANHMWDA---T-GSKQATIPTMGIDNWAD-PTA----------PIFAE-IAPLPAGL-------E-T 371 (507)
T ss_dssp CCBBCTTEEEEEEECCTTSC---C-CSCCCSSCCEEEECTTC-TTS----------CEEEE-EECCCCSS-------C-C
T ss_pred CCCCCCCCCCCCCCCCCCCC---C-CCCCCCCCEEEEECCCC-CCC----------CCEEE-ECCCCHHH-------H-H
T ss_conf 86215873000133466565---5-66678762689852578-888----------83797-34688778-------6-4
Q ss_pred CEEEEEEEEEECCCCEEEEE---E--EEEECCCHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 72689997541799658941---0--1840599535999999999-9999999808731155457997432258995799
Q 004496 576 RIAQLFALVRDQGSGEVKVE---G--KIKYRLSKNDKENLKTGLR-QALRILIAAGAEEVGTYRSDGHRIRCKGIKEEDL 649 (748)
Q Consensus 576 ~~~~~~~l~rd~~~G~V~~~---p--~i~y~~s~~D~~~l~~g~~-~~~~i~~~~Ga~~i~~~~~~~~~~~~~~~~d~~~ 649 (748)
+...+..+.+|.++|+|+++ + .++|..++ | ..+.++++ .+.+|+.+.++ .+.. +.+ .+|+
T Consensus 372 ~~~~~~~~~~p~s~G~V~L~s~~~~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~-~~~~-----~~~----~~d~-- 437 (507)
T 1coy_A 372 YVSLYLAITKNPERARFQFNSGTGKVDLTWAQSQ-N-QKGIDMAKKVFDKINQKEGT-IYRT-----DLF----GVYY-- 437 (507)
T ss_dssp CEEEEEEEECCCCCBCEEEETTTTEEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC-CBCS-----SCC------CC--
T ss_pred HEEEEEEEEEECCCCEEEECCCCCCEEECCCCCC-C-HHHHHHHHHHHHHHHHHCCC-CCCC-----CCC----CCCH--
T ss_conf 2001578766579867998158982353367787-6-89999999999999851477-5467-----223----4422--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99998545515877889876545433433485689999996348999454208908931887789888885554999999
Q 004496 650 EEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSY 729 (748)
Q Consensus 650 ~~~~~~~~~~~g~~~~~~~~~~~~s~H~~GTcrMG~~p~~gVVD~~grv~g~~nLyV~DaSvfPt~~g~NP~lTi~AlA~ 729 (748)
+. +...+++|++||||||. |||+++||||++||||+|+||||+++++||++||||+|.
T Consensus 438 ~~-----------------~~~~~~~H~~GTcrMG~-----VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAe 495 (507)
T 1coy_A 438 KT-----------------WGDDFTYHPLGGVLLNK-----ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAE 495 (507)
T ss_dssp CS-----------------SBCSEESCCBCSSCTTT-----TSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHH
T ss_pred HH-----------------HCCCCCCCCCCCCCHHH-----EECCCCEEECCCCEEEEECHHCCCCCCCCHHHHHHHHHH
T ss_conf 34-----------------05665112667716365-----288998380669839961100368888690899999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 004496 730 CISKKIADS 738 (748)
Q Consensus 730 ~iA~~ia~~ 738 (748)
|+|+.|.+.
T Consensus 496 raAd~I~~~ 504 (507)
T 1coy_A 496 RNMDKIISS 504 (507)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999997
No 8
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=1.00 E-value=1 Score=452.63 Aligned_cols=435 Identities=19% Similarity=0.263 Sum_probs=307.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCC-C----CCCCCC--CCCHHHHHHHCCC--------------
Q ss_conf 422299999880499999999889993999955689998-8----977867--9832455440894--------------
Q 004496 235 IKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVA-E----DYSSLE--GPSMHELYESGGL-------------- 293 (748)
Q Consensus 235 ~~~DVIIVGsG~gG~vaA~~LA~~G~~VlVLEkG~~~~~-~----~~~~~~--~~~~~~~y~~~g~-------------- 293 (748)
.+||+||||+|.+|+++|.+|++.|++|+|||+|..... . .+.... .+...|.|.+..+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~t~p~~~~~~l~~~~~~~~ 83 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN 83 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76878998989999999999986899389995788778777763446544455755454444663334442111256655
Q ss_pred --EE------CCCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHCCCCCCCCC
Q ss_conf --00------389957872167125522520023213882677654320499987925457-999975341486788765
Q 004496 294 --LS------TLDGKFMVFAGSAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYR-AAMDKVSKRIGVTEHCTE 364 (748)
Q Consensus 294 --~~------~~~~~~~~~~G~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~-~~~~~v~~~lgv~~~~~~ 364 (748)
.. ..+..+.+.+|+++||+|.+|++.+.|+.+.+|+.|. +.+.++++. ++|++++..++++.....
T Consensus 84 ~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~-----~~w~~~~l~~pyy~~~E~~~~~~~~~~~ 158 (504)
T 1n4w_A 84 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL-----PRVDSSEMYDRYFPRANSMLRVNHIDTK 158 (504)
T ss_dssp CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC-----TTSCHHHHHHTHHHHHHHHHTCBCCCHH
T ss_pred CCCCCCCCCEECCCCEEEEEEEECCHHHHHHCEEEEECCHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 55554620022279647998620345887509078768989998766-----6653455646999999998588888865
Q ss_pred ---C---CHHHHHHHHHHHHCCCCCCCCCCC-------------CCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHCC-C
Q ss_conf ---7---645799999999839995346889-------------9998531005677999843463221428887399-8
Q 004496 365 ---E---GFQNQVLRKGCENLGFKVESVARN-------------TPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNG-A 424 (748)
Q Consensus 365 ---~---~~~~~~l~~~~~~lG~~~~~~p~n-------------~~~~~~~g~c~~gc~~g~k~~~~~~~L~~a~~~G-~ 424 (748)
. ....+.+.++++++|++....|.+ ...|..||.|..+|..| |+++..+||..+.++| +
T Consensus 159 ~~~~~~~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~~~n~ 237 (504)
T 1n4w_A 159 WFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALGTGKV 237 (504)
T ss_dssp HHHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHHTTSE
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCC
T ss_conf 4567875569999999999749987667743356765546676446771026545547887-637899999999866895
Q ss_pred EEECCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEECCEEEECCCCCCCHHHHHHCC-CC-----CCCCCCC
Q ss_conf 89728689999971588887885699999984257731389997048998677788889998659-99-----9953564
Q 004496 425 VILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKLQIKAKATISACGSLLTPPLMISSG-LE-----NPNIGTN 498 (748)
Q Consensus 425 ~i~~~~~V~~I~~~~~~~g~~~~~v~GV~~~~~~~~~~~~~~i~Ak~VVlAaGal~Sp~LLl~SG-i~-----np~VG~n 498 (748)
+|++++.|++|++++++ ++++||++.+.++..++..+++|+.||||||+++||+||++|| ++ +++||+|
T Consensus 238 ~i~~~~~V~~i~~~~~g-----~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg~ig~i~~~~~~VG~n 312 (504)
T 1n4w_A 238 TIQTLHQVKTIRQTKDG-----GYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAG 312 (504)
T ss_dssp EEEESEEEEEEEECTTS-----SEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTCCTTTTCC
T ss_pred EEEECCEEEEEEECCCC-----CEEEEEEEECCCCCCCEEEEEEECEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHCCC
T ss_conf 89808888899987999-----8899999967888643059996088998458879989998554358978778356566
Q ss_pred CCCCCCCEE-EEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE
Q ss_conf 555754158-7661787533356666897176830124567655201027988841100347885204899999732872
Q 004496 499 LHLHPVLLA-WGYIPDHVSELKGKTFEGGIITSIHKVVSEDSKVQAIIESPAMGPASFAASFPWISGRELKDRMLRYGRI 577 (748)
Q Consensus 499 L~~Hp~~~~-~g~~~~~~~~~~~~~~~gg~~t~~~~~~~~~~~~~~~~e~~~~~p~~~~~~~pw~~g~~~k~~~~~~~~~ 577 (748)
|++|+...+ +...+.+ .. .++.++..+.......+ ... |..... .++.... . ...
T Consensus 313 l~dh~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~-~~~----------~~~~~~-~~~~~~~-------~-~~~ 368 (504)
T 1n4w_A 313 WGPNGNIMTARANHMWN---PT-GAHQSSIPALGIDAWDN-SDS----------SVFAEI-APMPAGL-------E-TWV 368 (504)
T ss_dssp BBCTTCEEEEEECCTTC---CC-CSCCCSSCCEEEEECCS-STT----------CEEEEE-ECCCCSS-------C-CCE
T ss_pred CCCCCCCEEEECCCCCC---CC-CCCCCCCCEEEEECCCC-CCC----------CEEEEE-CCCCHHH-------H-HHH
T ss_conf 02387503453157777---56-67688853799944689-988----------639985-4578478-------7-644
Q ss_pred EEEEEEEEECCCCEEEEE---E--EEEECCCHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 689997541799658941---0--1840599535999999999-999999980873115545799743225899579999
Q 004496 578 AQLFALVRDQGSGEVKVE---G--KIKYRLSKNDKENLKTGLR-QALRILIAAGAEEVGTYRSDGHRIRCKGIKEEDLEE 651 (748)
Q Consensus 578 ~~~~~l~rd~~~G~V~~~---p--~i~y~~s~~D~~~l~~g~~-~~~~i~~~~Ga~~i~~~~~~~~~~~~~~~~d~~~~~ 651 (748)
..+..+.+|.++|+|+++ | .++|..++ | +.+.++++ .+.+|+.+.++ + .+.+.
T Consensus 369 ~~~~~~~~p~srG~V~L~s~~~~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~----~~~~~------------- 427 (504)
T 1n4w_A 369 SLYLAITKNPQRGTFVYDAATDRAKLNWTRDQ-N-APAVNAAKALFDRINKANGT--I----YRYDL------------- 427 (504)
T ss_dssp EEEEEEECCCCCBCEEEETTTTEEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--C----BCCSS-------------
T ss_pred HHHEEEECCCCCCEEEECCCCCCEEECCCCCC-C-HHHHHHHHHHHHHHHHCCCC--C----CCCCH-------------
T ss_conf 62113302588837985588984673168886-7-89999999999999842687--7----67803-------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99854551587788987654543343348568999999634899945420890893188778988888555499999999
Q 004496 652 FIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCI 731 (748)
Q Consensus 652 ~~~~~~~~~g~~~~~~~~~~~~s~H~~GTcrMG~~p~~gVVD~~grv~g~~nLyV~DaSvfPt~~g~NP~lTi~AlA~~i 731 (748)
|+++.. .+...+++|++|||||| +|||+++||||++||||+|+||||+++++||++||||+|.|+
T Consensus 428 ~~~~~~----------~~~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAera 492 (504)
T 1n4w_A 428 FGTQLK----------AFADDFCYHPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERN 492 (504)
T ss_dssp SSSSCC----------SEECSEESSCBCSSCTT-----TTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHH
T ss_pred HHHHHH----------HHCCCCCCCCCCCCEEE-----EEECCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 332245----------42567514566783620-----278899718230996996001057888868699999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999985
Q 004496 732 SKKIADSLK 740 (748)
Q Consensus 732 A~~ia~~l~ 740 (748)
|+.|.+...
T Consensus 493 Ad~I~~~~~ 501 (504)
T 1n4w_A 493 VERIIKQDV 501 (504)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
T ss_conf 999987651
No 9
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=1.00 E-value=1 Score=450.14 Aligned_cols=452 Identities=17% Similarity=0.145 Sum_probs=296.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHH------HHHCCCEECCCCCEEEECC
Q ss_conf 6742229999988049999999988999399995568999889778679832455------4408940038995787216
Q 004496 233 FEIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAEDYSSLEGPSMHEL------YESGGLLSTLDGKFMVFAG 306 (748)
Q Consensus 233 ~~~~~DVIIVGsG~gG~vaA~~LA~~G~~VlVLEkG~~~~~~~~~~~~~~~~~~~------y~~~g~~~~~~~~~~~~~G 306 (748)
...+|||||||||++|+++|.+|++ |.+|||||+|.......... ....+... |.+..+....+..+.+.+|
T Consensus 23 ~~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~q~~~~~~~~~~~rg 100 (536)
T 1ju2_A 23 LEGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTAYPNVL-TADGFVYNLQQEDDGKTPVERFVSEDGIDNVRG 100 (536)
T ss_dssp SEEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGGSGGGG-BGGGHHHHHHSCCCSSSSEEEEECTTSCEEEEE
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCEE-CCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 6675367998966899999999866-99579993688767786520-606676523677767577866548875300013
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 71255225200232138826776543204999879254579999753414867887657645799999999839995346
Q 004496 307 SAVGGGSAVNWSACIETPDSVLRDWFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHCTEEGFQNQVLRKGCENLGFKVESV 386 (748)
Q Consensus 307 ~~~GGgs~in~~~~~r~~~~~~~~W~~~~g~p~~~~~e~~~~~~~v~~~lgv~~~~~~~~~~~~~l~~~~~~lG~~~~~~ 386 (748)
+++||+|.+|++.+.|..+.+++.+ |+. |.++++.++|++++..+..... .......+.+++.++|+.....
T Consensus 101 ~~lGGsS~in~~~~~R~~~~d~~~~----G~~-W~~~~~~p~~~~~e~~~~~~~~---~~~~~~~~~~a~~~~G~~~~~~ 172 (536)
T 1ju2_A 101 RVLGGTSIINAGVYARANTSIYSAS----GVD-WDMDLVNQTYEWVEDTIVYKPN---SQSWQSVTKTAFLEAGVHPNHG 172 (536)
T ss_dssp CBTTGGGGTSCCEECBCCTTSSTTS----SSC-CCHHHHHHHHHHHHHHHCBCCC---CCHHHHHHHHHHHHTTCCCEEE
T ss_pred EECCCCCCCCCEEEEECCHHHHHHC----CCC-CCHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHHHCCCCCCCC
T ss_conf 0035640016739980998999603----699-8858888998862003577887---7708999999999749987777
Q ss_pred C-CCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 8-899998531005677999843463221428887399889728689999971588887885699999984257731389
Q 004496 387 A-RNTPEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDNGAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNVTRKL 465 (748)
Q Consensus 387 p-~n~~~~~~~g~c~~gc~~g~k~~~~~~~L~~a~~~G~~i~~~~~V~~I~~~~~~~g~~~~~v~GV~~~~~~~~~~~~~ 465 (748)
. ........+|.|.. +..|.|.++.. ++..+.+.|++|++++.|++|++++++ +++++||++.+. .++..
T Consensus 173 ~~~~~~~g~~~g~~~~-~~~g~r~s~~~-~~~~~~~~~~~v~~~~~v~~i~~~~~~----~~~~~GV~~~~~---~g~~~ 243 (536)
T 1ju2_A 173 FSLDHEEGTRITGSTF-DNKGTRHAADE-LLNKGNSNNLRVGVHASVEKIIFSNAP----GLTATGVIYRDS---NGTPH 243 (536)
T ss_dssp ECCBCCSEEEECEESB-CTTSBBCCGGG-GGGGSCTTTEEEEESCEEEEEEECCSS----SCBEEEEEEECT---TSCEE
T ss_pred CCCCCCCCCEEEEEEE-CCCCEEECHHH-HHHHHCCCCCEEEECCEEEEEEECCCC----CCEEEEEEEEEC---CCCEE
T ss_conf 6567778720345788-89981815999-634412898389968789899988998----877999999957---99569
Q ss_pred EE---ECCEEEECCCCCCCHHHHHHCCCCC---------------CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99---7048998677788889998659999---------------95356455575415876617875333566668971
Q 004496 466 QI---KAKATISACGSLLTPPLMISSGLEN---------------PNIGTNLHLHPVLLAWGYIPDHVSELKGKTFEGGI 527 (748)
Q Consensus 466 ~i---~Ak~VVlAaGal~Sp~LLl~SGi~n---------------p~VG~nL~~Hp~~~~~g~~~~~~~~~~~~~~~gg~ 527 (748)
++ .+|.||||||+++||+||++|||++ |+||+||+|||...+...+++... . .. ...
T Consensus 244 ~~~v~a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~~~~~~~~~~~~--~--~~-~~~ 318 (536)
T 1ju2_A 244 QAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIE--P--TI-VTV 318 (536)
T ss_dssp EEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEEEEEECCSSCCC--C--CC-CCE
T ss_pred EEEECCCCEEEECCCCCCCHHHHHHCCCCCHHHHHHCCCCEEECCCCCCCCHHCCCCEEEEEEECCCCC--C--CC-CHH
T ss_conf 998435777997676547888998748998899976699647538562300131854159998178766--5--51-001
Q ss_pred EEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCEEEE--------EEEE-
Q ss_conf 7683012456765520102798884110034788520489999973287268999754179965894--------1018-
Q 004496 528 ITSIHKVVSEDSKVQAIIESPAMGPASFAASFPWISGRELKDRMLRYGRIAQLFALVRDQGSGEVKV--------EGKI- 598 (748)
Q Consensus 528 ~t~~~~~~~~~~~~~~~~e~~~~~p~~~~~~~pw~~g~~~k~~~~~~~~~~~~~~l~rd~~~G~V~~--------~p~i- 598 (748)
. .....+.. ...+. +... . + .+..+..+... +...........+.+|.++|+|++ .|.|
T Consensus 319 ~-~~~~~~~~-~~~g~-~~~~-~-~-~~~~~~~~~~~------~~~~~~~~~~~~l~~P~SrG~V~L~~s~Dp~~~P~i~ 386 (536)
T 1ju2_A 319 L-GISNDFYQ-CSFSS-LPFT-T-P-PFGFFPSSSYP------LPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVK 386 (536)
T ss_dssp E-EECSSEEE-EEEEE-CCCS-S-C-CBTTBSSSCCC------CCSSCEEEEEEEESSCSCCEEEECSCSSCTTSCCEEC
T ss_pred H-HHHHHHHH-CCCCC-CCCC-H-H-HHEEECCCCCC------CCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCEEC
T ss_conf 0-37899997-29877-7787-1-1-30462476557------8876337996221888744079958889966586103
Q ss_pred -EECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCC-------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -405995359999999999999999808731155457-99743-------225899579999998545515877889876
Q 004496 599 -KYRLSKNDKENLKTGLRQALRILIAAGAEEVGTYRS-DGHRI-------RCKGIKEEDLEEFIGSIEVVGGMASRGEHW 669 (748)
Q Consensus 599 -~y~~s~~D~~~l~~g~~~~~~i~~~~Ga~~i~~~~~-~~~~~-------~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~ 669 (748)
+|..++.|++.+.++++.+++|+...++..+..... ..+.+ .....+|+++++|++...
T Consensus 387 ~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~d~~~~~~ir~~~------------ 454 (536)
T 1ju2_A 387 FNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESV------------ 454 (536)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCSCTTCHHHHHHHHHHHC------------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC------------
T ss_conf 13258841899999999999999768320333022244677743344578866689999999998666------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5454334334856899999963489994542089089318877898888855549999999999999998
Q 004496 670 SVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKKIADSL 739 (748)
Q Consensus 670 ~~~~s~H~~GTcrMG~~p~~gVVD~~grv~g~~nLyV~DaSvfPt~~g~NP~lTi~AlA~~iA~~ia~~l 739 (748)
.+.+|++||||||. |||+++||||++||||+||||||+.+++||++|+||+|.++|+.|.+.-
T Consensus 455 --~t~~H~~GTcrMG~-----VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~ 517 (536)
T 1ju2_A 455 --ASYWHYHGGCLVGK-----VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 517 (536)
T ss_dssp --EECSCCEESSCBTT-----TBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCCCCCCCCC-----EECCCCEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf --76656737527864-----8998986918898699552557778885358999999999999999854
No 10
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=1.00 E-value=1 Score=446.01 Aligned_cols=460 Identities=19% Similarity=0.263 Sum_probs=297.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC---CCC----------CCCCCCHH-HHHHHCCCEECCCC
Q ss_conf 74222999998804999999998899939999556899988---977----------86798324-55440894003899
Q 004496 234 EIKCDVVVVGSGCGGGVAAAVLASSGQKVLVLEKGNYFVAE---DYS----------SLEGPSMH-ELYESGGLLSTLDG 299 (748)
Q Consensus 234 ~~~~DVIIVGsG~gG~vaA~~LA~~G~~VlVLEkG~~~~~~---~~~----------~~~~~~~~-~~y~~~g~~~~~~~ 299 (748)
..+|||||||||++|+++|.+|+++|++|+|||+|...... ... ....|++. .++..... .....
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~ 83 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP-FWWCK 83 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC-TTBCT
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCC-CCCCC
T ss_conf 87503999896889999999998689818999279977665566456411245556045364467776248875-53666
Q ss_pred CEEEECCCCCCCHHHHHCCCCCCCCHHHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC-----CCCCHHHHH
Q ss_conf 5787216712552252002321388267765---43204999879254579999753414867887-----657645799
Q 004496 300 KFMVFAGSAVGGGSAVNWSACIETPDSVLRD---WFVEHKIPLFGSLDYRAAMDKVSKRIGVTEHC-----TEEGFQNQV 371 (748)
Q Consensus 300 ~~~~~~G~~~GGgs~in~~~~~r~~~~~~~~---W~~~~g~p~~~~~e~~~~~~~v~~~lgv~~~~-----~~~~~~~~~ 371 (748)
...+.+|+++||+|.+|++.+.|..+.+|+. |... |.+.+ +++++.+..++..... .........
T Consensus 84 ~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~~~-----w~~~~--p~~~k~e~~~~~~~~~~~~g~~~~~~~~~~ 156 (546)
T 1kdg_A 84 DITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSS-----WTNHA--PYTSKLSSRLPSTDHPSTDGQRYLEQSFNV 156 (546)
T ss_dssp TBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGG-----GSCCH--HHHHHHHHHSCCBSCCSTTSCCCSCHHHHH
T ss_pred CCCCCCCEEECCCCCCCCEEEECCCHHHHCCCCCCCCC-----CCCCC--HHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 64343110323410233658842996895375667666-----68364--999988750788766777887668778999
Q ss_pred HHHHHHHCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCHHHHHHC-CCEEECCCEEEEEEEECCCCCCCCCEE
Q ss_conf 9999998399953468899-99853100567799984346322142888739-988972868999997158888788569
Q 004496 372 LRKGCENLGFKVESVARNT-PEEHYCGSCNYGCRTGDKKGTDVTWLVDAVDN-GAVILAGFKAEKFILVDNKDSIRSKKC 449 (748)
Q Consensus 372 l~~~~~~lG~~~~~~p~n~-~~~~~~g~c~~gc~~g~k~~~~~~~L~~a~~~-G~~i~~~~~V~~I~~~~~~~g~~~~~v 449 (748)
+.++++++|++....+.+. .....++.+.+.|..+.|.++..+|+..+.++ +++|++++.|++|+++++ ++
T Consensus 157 ~~~a~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~-------~~ 229 (546)
T 1kdg_A 157 VSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-------QI 229 (546)
T ss_dssp HHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT-------EE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEEECC-------EE
T ss_conf 99999987998677667767787679620011279952579999999986179928993889999999699-------99
Q ss_pred EEEEEEECCCCCEEEEEE-ECCEEEECCCCCCCHHHHHHCCCCC--------------------------CCCCCCCCCC
Q ss_conf 999998425773138999-7048998677788889998659999--------------------------9535645557
Q 004496 450 LGVTATALNKNVTRKLQI-KAKATISACGSLLTPPLMISSGLEN--------------------------PNIGTNLHLH 502 (748)
Q Consensus 450 ~GV~~~~~~~~~~~~~~i-~Ak~VVlAaGal~Sp~LLl~SGi~n--------------------------p~VG~nL~~H 502 (748)
+||++.+...+....+++ .+|.||||||+++||+||++|||++ | ||+||+||
T Consensus 230 ~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlp-VG~nL~DH 308 (546)
T 1kdg_A 230 LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP-VGMNAQDN 308 (546)
T ss_dssp EEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCC-TTTTBBCC
T ss_pred EEEEEEECCCCCEEEEEEEECCEEEECCCHHCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 99999855899656799995898998577315999998748996899997535556786534445503687-45472357
Q ss_pred CCCEEEEECCCC--CCCC----CCC------CC---CCCCEEEEECCCCCCCCCCCEECC-CCCCCCCCCCCCCC---CC
Q ss_conf 541587661787--5333----566------66---897176830124567655201027-98884110034788---52
Q 004496 503 PVLLAWGYIPDH--VSEL----KGK------TF---EGGIITSIHKVVSEDSKVQAIIES-PAMGPASFAASFPW---IS 563 (748)
Q Consensus 503 p~~~~~g~~~~~--~~~~----~~~------~~---~gg~~t~~~~~~~~~~~~~~~~e~-~~~~p~~~~~~~pw---~~ 563 (748)
+...+....+.. ..++ ... .| ..|+++..... ..+-..... ....+.....+.|. ..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (546)
T 1kdg_A 309 PSINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPK----LNFWRAYSGSDGFTRYAQGTVRPGAASVN 384 (546)
T ss_dssp CCEEEEEECTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCSCC----EEEEEEEECTTSCEEEEEEEEEESCSCCC
T ss_pred CCEEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC----EEEEECCCCCCCCHHHHHHEECCCCCCCC
T ss_conf 55168886488665431444413500899999997499663058766----68998467777323434121055432446
Q ss_pred CHHHHHHHHHCCCEEE-EEEEEEE-CCCCEEEEE-----EEE--EECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0489999973287268-9997541-799658941-----018--405995359999999999999999808731155457
Q 004496 564 GRELKDRMLRYGRIAQ-LFALVRD-QGSGEVKVE-----GKI--KYRLSKNDKENLKTGLRQALRILIAAGAEEVGTYRS 634 (748)
Q Consensus 564 g~~~k~~~~~~~~~~~-~~~l~rd-~~~G~V~~~-----p~i--~y~~s~~D~~~l~~g~~~~~~i~~~~Ga~~i~~~~~ 634 (748)
+. +. ....+... ...+.++ .++|+|+++ +.| +|..++.|++.+.++++.+++++...+..+.. .
T Consensus 385 ~~--~~--~~~~~~~~~~~~~~~p~~srG~v~L~s~~~~~~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~---~ 457 (546)
T 1kdg_A 385 SS--LP--YNASQIFTITVYLSTGIQSRGRIGIDAALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI---T 457 (546)
T ss_dssp CS--SC--CCGGGEEEEEEEECTTCCCCBEEEECTTCCEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEE---E
T ss_pred CC--CC--CCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC---C
T ss_conf 66--66--67888599983105777778557337899887534331379327999999999999986387765555---8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCC
Q ss_conf 99743225899579999998545515877889876545433433485689999996348999454208908931887789
Q 004496 635 DGHRIRCKGIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPS 714 (748)
Q Consensus 635 ~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~s~H~~GTcrMG~~p~~gVVD~~grv~g~~nLyV~DaSvfPt 714 (748)
+++ ..+|+++.+|++.. ..+++|++||||||.++.+||||+++||||++||||+||||||+
T Consensus 458 p~~-----~~~~~~~~~~~~~~--------------~~t~~H~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~ 518 (546)
T 1kdg_A 458 PDV-----TQTLEEYVDAYDPA--------------TMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPH 518 (546)
T ss_dssp SCT-----TSCHHHHHHHSCGG--------------GGCCSCCBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSS
T ss_pred CCC-----CCCHHHHHHHHHHH--------------CCCCCCCCCCEECCCCCCCEEECCCCEECCCCCCEEEEECCCCC
T ss_conf 999-----88999999999982--------------68664334653168889980389998384678828857022677
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888855549999999999999998
Q 004496 715 AIGINPMITIESTSYCISKKIADSL 739 (748)
Q Consensus 715 ~~g~NP~lTi~AlA~~iA~~ia~~l 739 (748)
.+++||++||||+|.|+|+.|.+.+
T Consensus 519 ~~~~np~~ti~aiAeraAd~I~~~~ 543 (546)
T 1kdg_A 519 LPTGNPQGTLMSAAEQAAAKILALA 543 (546)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 8775378999999999999987543
Done!