BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004498
(748 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IV66|RNE_ARATH Ribonuclease E/G-like protein, chloroplastic OS=Arabidopsis
thaliana GN=RNE PE=1 SV=1
Length = 1001
Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/752 (67%), Positives = 596/752 (79%), Gaps = 23/752 (3%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 264 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 322
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 323 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 380
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 381 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 440
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 441 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 498
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 499 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 546
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 547 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 606
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 607 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 666
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 667 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 726
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 727 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 786
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV 598
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKRV
Sbjct: 787 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 846
Query: 599 RPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLAMMEQKADPENPKSWPRFILR 658
RPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R LA ME++ D ENPKSWPRFILR
Sbjct: 847 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILR 906
Query: 659 VDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKA-SENQHQVA 717
VD HM ++LT+GKRTRLA+LSSSLK WILLKVAR FTRG FEV P+ D+K +E QHQVA
Sbjct: 907 VDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVA 966
Query: 718 ISLLRSAEARANKSG-KKVTLVPIKKLKSGRK 748
ISLL+ A+A A+ SG KK+TL+PIKK K+ K
Sbjct: 967 ISLLKKADAIADSSGKKKLTLIPIKKEKTSGK 998
>sp|P44443|RNE_HAEIN Ribonuclease E OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rne PE=3 SV=1
Length = 935
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 197/329 (59%), Gaps = 14/329 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 64 RHGFLPLKEIAREY-FP 79
>sp|P21513|RNE_ECOLI Ribonuclease E OS=Escherichia coli (strain K12) GN=rne PE=1 SV=6
Length = 1061
Score = 226 bits (575), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 238/444 (53%), Gaps = 47/444 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK 293
EA F D+ E +GF P K E ++++H G + K +++
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPANYSAH--GRPNIKDV--------LRE 96
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G +RT LK
Sbjct: 97 GQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALA 156
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
+L+ PEG GL +RT G S E LQ DL L W+ I + A+S P L
Sbjct: 157 SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP----------APFL 206
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA-PDLCDRVELYDKRIPLF 470
+H+ + +DY + + ++++D+P+ ++ + PD +++LY IPLF
Sbjct: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ + NL
Sbjct: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT--RGGDIEETAFNTNL 324
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR GL
Sbjct: 325 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 384
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALET-SFSKIEQEISRLLAMMEQKADPENP 649
+E++R+R+ PS+ C C GTG V E+ S S +L ++E++A EN
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS--------ILRLIEEEALKENT 436
Query: 650 KSWPRFILRVDHHMCNYLTSGKRT 673
+ I+ V + +YL + KR+
Sbjct: 437 QEV-HAIVPVP--IASYLLNEKRS 457
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>sp|P57429|RNE_BUCAI Ribonuclease E OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rne PE=3 SV=1
Length = 902
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 144/452 (31%), Positives = 234/452 (51%), Gaps = 56/452 (12%)
Query: 209 DEEHDGDDFDVSEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKS 262
D EH G + S + K I EP EA F D+ E E NGF P SK+
Sbjct: 28 DIEHSGSEQKKSNIYKGK----ITRIEPSLEAAFVDYGE-------EKNGFLPLKEISKN 76
Query: 263 EVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSR 322
P++ H + T G +Q+G +VIVQ+ KE GTKG LT + L
Sbjct: 77 YFPEN----HIE-------TLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGS 125
Query: 323 FWILITSCDRIG-VSRKITGVER-TRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLE 380
+ +L+ + + G +SR+I G +R +++ PE L IRT AG S+E L+ DL
Sbjct: 126 YLVLMPNSPKSGGISRRIEGNDRIALKELLTLLELPEEMSLIIRTAGAGKSIESLRWDLS 185
Query: 381 GLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPR 440
L WK I AKS P L+H+ + +DY + + ++++D+P+
Sbjct: 186 LRLQHWKTIQIIAKSRT----------APFLIHQESNIIVRAFRDYLRQDIGEILIDNPK 235
Query: 441 TYHEVTSYLQDIA-PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQ 499
++ + PD ++++LY +PLF F IE +IN+ ++V LP+GGS++++
Sbjct: 236 ILDLARKHITFLGRPDFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDS 295
Query: 500 TEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADD 559
TEAL +ID+N G+ + NL A +I+R+LRLRD+GG+IV+DFIDM+
Sbjct: 296 TEALTAIDINSSRST--SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAI 353
Query: 560 SNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
S++R + +++ DR+ +++ ++SR GL+E++R+R+ S+ C C GTG +
Sbjct: 354 SHQRAIENRLREIARDDRARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTI 413
Query: 620 ---EALETSFSKIEQEISRLLAMMEQKADPEN 648
E+L S +L ++E++A EN
Sbjct: 414 RDNESLSLS----------ILRLIEEEALKEN 435
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E S + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEE 63
Query: 138 RPSLMDIKHYREPFIFP 154
+ + +K + + FP
Sbjct: 64 KNGFLPLKEISKNY-FP 79
>sp|Q8K9J9|RNE_BUCAP Ribonuclease E OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rne PE=3 SV=1
Length = 968
Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 223/406 (54%), Gaps = 43/406 (10%)
Query: 253 ESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
E +GF P SK+ P++ + KD +++G ++IVQ+ KE GT
Sbjct: 63 EKHGFLPLKEISKNYFPENYNCDVRLNIKDI-----------LREGQELIVQINKEERGT 111
Query: 309 KGPTLTAYPKLRSRFWILITSCDRI-GVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTV 366
KG LT + L + +L+ + +I G+SR++ G +R LK + +L+ PE GL IRT
Sbjct: 112 KGAALTTFITLAGSYLVLMPNNPKIAGISRRVEGSDRIELKELLSSLKIPEKMGLIIRTA 171
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
G S++ LQ DL L W I + +K + P L+++ + +DY
Sbjct: 172 GVGKSIKSLQWDLSLRLKHWNAIKKASKKKS----------APFLIYQESNVIVRAFRDY 221
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIA-PDLCDRVELYDKRIPLFDKFNIEEEINNMLSK 485
+ + ++++D+P+ ++ + PD ++++LY IPLF + IE +I++ +
Sbjct: 222 LRQDIGEILIDNPKILDIAREHITALGRPDFINKIKLYTGEIPLFSYYQIESQIDSAFQR 281
Query: 486 RVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDI 545
+V LP+GGS++++ TEAL +ID+N G+ E + NL A ++I+R+LRLRD+
Sbjct: 282 KVRLPSGGSIMVDTTEALTAIDINSSRST--RGADIETTAFNTNLEAVEEISRQLRLRDL 339
Query: 546 GGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFM 605
GG+IV+DFIDM S+++++ ++++ V DR+ +++ +S+ GL+E++R+R+ S+
Sbjct: 340 GGLIVIDFIDMTTISHQKIIENKLREIVREDRARIQIGHISKFGLLEMSRQRLSSSLGES 399
Query: 606 ISEPCTCCQGTGRV---EALETSFSKIEQEISRLLAMMEQKADPEN 648
C C GTG + E+L S +L ++E++A EN
Sbjct: 400 SHHICPRCTGTGTIRDNESLSLS----------ILRLIEEEALKEN 435
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 45/81 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E +S + ++Y G +T++ P++ F++ G
Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYGME 63
Query: 138 RPSLMDIKHYREPFIFPPFRC 158
+ + +K + + + C
Sbjct: 64 KHGFLPLKEISKNYFPENYNC 84
>sp|Q89AH3|RNE_BUCBP Putative truncated ribonuclease E OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rne PE=3 SV=1
Length = 410
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 203/363 (55%), Gaps = 29/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E + NGF P K + S P + +H + +++G +
Sbjct: 54 EAAFVDYGE-------KKNGFLPLK----EISRNYFPNNCSNYRHLHIKNI---LKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRI-GVSRKITGVERTRLK-VIAKTL 354
IVQ+ KE GTKG LT + L + +L+ +C + G+SRKI G++R LK +I+ +
Sbjct: 100 CIVQIDKEERGTKGALLTTFISLAGNYLVLMPNCPHLEGISRKIEGIDRFHLKKIISMLM 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PE G+ IRT G S+E LQ DL + W I KSA + P L+H+
Sbjct: 160 VPENMGIIIRTSGVGRSIETLQLDLNFRVKNWYTI---KKSAEI-------NTAPCLIHK 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR-VELYDKRIPLFDKF 473
+ ++DY + +++++VD+P Y+ ++ ++ ++LY PLF +
Sbjct: 210 ESNIVIRTLRDYLKKDIQEIIVDNPEILELARDYMFNMNCSYFEKKIKLYTGSDPLFSYY 269
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +IN +L + V LP+GGS++I+ TEAL +ID+N G + E+ + N A
Sbjct: 270 KIESQINALLRRIVKLPSGGSIIIDYTEALTAIDINSSQST--KGVNIEETAFNTNYEAV 327
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRD+GG+IV+DFIDM+ +++++ + + +++DR+ V+V +S+ GL+E+
Sbjct: 328 REIARQLRLRDLGGLIVIDFIDMSVLKHQKMIELHLHQVLQKDRARVQVGSISQFGLLEM 387
Query: 594 TRK 596
+R+
Sbjct: 388 SRQ 390
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN+ RIA+++ ++L +L +E + + ++Y G + ++ P++ AFV+ G
Sbjct: 4 MLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYGEK 63
Query: 138 RPSLMDIKHYREPFIFP 154
+ + +K + FP
Sbjct: 64 KNGFLPLKEISRNY-FP 79
>sp|P45175|RNG_HAEIN Ribonuclease G OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rng PE=3 SV=1
Length = 491
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 199/351 (56%), Gaps = 13/351 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
V++G ++VQVVKE LGTKG LT L SR + + +GVS++I + ER RLK
Sbjct: 98 VREGQDIVVQVVKEPLGTKGARLTTDITLPSRHLVFMPENSHVGVSQRIESEEERARLKA 157
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ + E G IRT G S EEL++D E L W+ ++E + E A+P
Sbjct: 158 LVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLWRKVLERKSKYPTKSKIYGEPALP 217
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
I++D+ ++K+ +DS + EV + + P+L D++ LY P+
Sbjct: 218 ----------QRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPELSDKLVLYSGNQPI 267
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD + +E I L KRV L +GG L+IEQTEA+ +ID+N G GH + E+ I + N
Sbjct: 268 FDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTG-AFVGH-RNLEETIFNTN 325
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ A K IA EL+LR++GGII++DFIDM D ++ V + + A+ +DR V+ ++ G
Sbjct: 326 IEATKAIAHELQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRMKTNVNGFTQLG 385
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLAMM 640
L+E+TRKR R S+ ++ + C C G GRV+ +ET +I +EI R+ +
Sbjct: 386 LVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYHLF 436
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
RIA++E L E+ +E ++Y G VT+++P M AFV+IG + + +
Sbjct: 16 RIALVETGMLREVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFL 69
>sp|P0A9J3|RNG_SHIFL Ribonuclease G OS=Shigella flexneri GN=rng PE=3 SV=2
Length = 489
Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 204/369 (55%), Gaps = 14/369 (3%)
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
HT G + + T + + L V++G ++VQVVK+ LGTKG LT L SR+ + +
Sbjct: 76 HTECVAGEEQKQFTVRDISEL-VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134
Query: 329 SCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387
+GVS++I + ER RLK + E G IRT A G EL D L W
Sbjct: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
+ME K L+ + +++D+ + ++ ++ VDS TY +
Sbjct: 195 KVMERKKRPQTRYQ----------LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
+ + P++ ++E Y R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++D
Sbjct: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
+N G GH + + I + N+ A + IAR+LRLR++GGII++DFIDM ++ ++R V
Sbjct: 305 INTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++A+ +DR V+ S GL+E+TRKR R S+ ++ C C G G V+ +ET
Sbjct: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422
Query: 628 KIEQEISRL 636
+I +EI R+
Sbjct: 423 EIMREIVRV 431
>sp|P0A9J0|RNG_ECOLI Ribonuclease G OS=Escherichia coli (strain K12) GN=rng PE=1 SV=2
Length = 489
Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 204/369 (55%), Gaps = 14/369 (3%)
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
HT G + + T + + L V++G ++VQVVK+ LGTKG LT L SR+ + +
Sbjct: 76 HTECVAGEEQKQFTVRDISEL-VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134
Query: 329 SCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387
+GVS++I + ER RLK + E G IRT A G EL D L W
Sbjct: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
+ME K L+ + +++D+ + ++ ++ VDS TY +
Sbjct: 195 KVMERKKRPQTRYQ----------LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
+ + P++ ++E Y R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++D
Sbjct: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
+N G GH + + I + N+ A + IAR+LRLR++GGII++DFIDM ++ ++R V
Sbjct: 305 INTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++A+ +DR V+ S GL+E+TRKR R S+ ++ C C G G V+ +ET
Sbjct: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422
Query: 628 KIEQEISRL 636
+I +EI R+
Sbjct: 423 EIMREIVRV 431
>sp|P0A9J1|RNG_ECOL6 Ribonuclease G OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=rng PE=3 SV=2
Length = 489
Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 204/369 (55%), Gaps = 14/369 (3%)
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
HT G + + T + + L V++G ++VQVVK+ LGTKG LT L SR+ + +
Sbjct: 76 HTECVAGEEQKQFTVRDISEL-VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134
Query: 329 SCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387
+GVS++I + ER RLK + E G IRT A G EL D L W
Sbjct: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
+ME K L+ + +++D+ + ++ ++ VDS TY +
Sbjct: 195 KVMERKKRPQTRYQ----------LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
+ + P++ ++E Y R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++D
Sbjct: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
+N G GH + + I + N+ A + IAR+LRLR++GGII++DFIDM ++ ++R V
Sbjct: 305 INTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++A+ +DR V+ S GL+E+TRKR R S+ ++ C C G G V+ +ET
Sbjct: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422
Query: 628 KIEQEISRL 636
+I +EI R+
Sbjct: 423 EIMREIVRV 431
>sp|P0A9J2|RNG_ECO57 Ribonuclease G OS=Escherichia coli O157:H7 GN=rng PE=3 SV=2
Length = 489
Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 204/369 (55%), Gaps = 14/369 (3%)
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
HT G + + T + + L V++G ++VQVVK+ LGTKG LT L SR+ + +
Sbjct: 76 HTECVAGEEQKQFTVRDISEL-VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134
Query: 329 SCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387
+GVS++I + ER RLK + E G IRT A G EL D L W
Sbjct: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
+ME K L+ + +++D+ + ++ ++ VDS TY +
Sbjct: 195 KVMERKKRPQTRYQ----------LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
+ + P++ ++E Y R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++D
Sbjct: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
+N G GH + + I + N+ A + IAR+LRLR++GGII++DFIDM ++ ++R V
Sbjct: 305 INTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++A+ +DR V+ S GL+E+TRKR R S+ ++ C C G G V+ +ET
Sbjct: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422
Query: 628 KIEQEISRL 636
+I +EI R+
Sbjct: 423 EIMREIVRV 431
>sp|P72656|RNE_SYNY3 Ribonuclease E homolog OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rne PE=3 SV=1
Length = 674
Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 186/332 (56%), Gaps = 18/332 (5%)
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVIAKTL 354
+V+VQV+KE G KGP LT + R+ +L+ + +SR+I E R+RL+ +A +
Sbjct: 91 RVLVQVMKEPTGNKGPRLTGNISMPGRYMVLMPYGRGVNLSRRINREEERSRLRALAVLI 150
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
+P G GL +RT A + + +DLE L W+ + + A + + P+LL R
Sbjct: 151 KPPGMGLLVRTEAEDVPEDAIIEDLENLQKQWELVQQQAMTRS----------APMLLDR 200
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSP----RTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
+++D ++ +V ++VVD+P R ++ ++ Q P+ ++ + + + +
Sbjct: 201 DDDFIKRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQGRLPEGV-LIDCHRESLSIL 259
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ F + I L RV LP+GG ++IE TEAL IDVN G F H ++ + +L N
Sbjct: 260 EYFRVNATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGS--FTHSANSRETVLWTNY 317
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+L+LR+IGG+I++DFIDM ++ + E + +E D++ ++++L+ GL
Sbjct: 318 EAATEIARQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCLETDKARPQIAQLTELGL 377
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEAL 622
+E+TRKR ++ + +PC C G G + L
Sbjct: 378 VELTRKRQGQNLYELFGQPCPECGGLGHLVEL 409
>sp|P51211|RNE_PORPU Ribonuclease E homolog OS=Porphyra purpurea GN=rne PE=3 SV=1
Length = 511
Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 166/333 (49%), Gaps = 16/333 (4%)
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAKTL 354
K++VQ++KE KGP LTA L R+ +L+ I +SRKI ER LK +A +
Sbjct: 91 KILVQIIKEPTLNKGPRLTANITLSGRYIVLMPFSQAICISRKIYDEDERHYLKALAILI 150
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
+P GL R A G E + +L L W I + A + P+LL++
Sbjct: 151 KPPTMGLLFRPSAIGIDEEIILSELTNLKEQWYFIQKSA----------INNCAPVLLYK 200
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV---ELYDKRIPLFD 471
+++D+++ K +V+DS ++ Y+ + + +LY + D
Sbjct: 201 DEDIVKKVIRDFYDNNTKNIVIDSNLGLKQLNYYINTWQCNFSSTIPSLQLYSSNKCILD 260
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F I + I+ L +V L GG + IE EA IDVN G F + +S + +L N +
Sbjct: 261 TFRINQAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGS--FNNSTSARETVLKTNCS 318
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IA +L++R+I G+I++DFIDM ++ + E K + D + ++ +LS GL+
Sbjct: 319 AATEIAYQLKIRNIAGVIIIDFIDMESQRDQLQLLEHFDKELSLDDAKPQIVQLSELGLV 378
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
E+TR+R S+ ++S ++E L++
Sbjct: 379 ELTRRRKGKSLYELVSNDSNYFHFFIQLEQLDS 411
>sp|Q1XDS6|RNE_PORYE Ribonuclease E homolog OS=Porphyra yezoensis GN=rne PE=3 SV=1
Length = 509
Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 16/316 (5%)
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAKTL 354
K++VQ++KE KGP LTA L R+ +L+ I +SRKI ER LK +A +
Sbjct: 91 KILVQIIKEPTLNKGPRLTANITLSGRYIVLMPFSQSICISRKIYDEDERHYLKSLAILI 150
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
+P GL R A G E + +L+ L W + + A + P+LL++
Sbjct: 151 KPATMGLLFRPSAVGVDEEIILSELKNLKEQWNFVQKSA----------INSYSPVLLYK 200
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD---LCDRVELYDKRIPLFD 471
+++D++N +V+DS ++ Y+ + +++LY + D
Sbjct: 201 DEDIVKKVIRDFYNNNTNNIVIDSNLGLKQLNYYIHTWHCNNSSTVPKIKLYSNNQCILD 260
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F I + I+ L +V L GG + IE EA IDVN G F + +S + +L N +
Sbjct: 261 AFGINQAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGS--FNNSTSARETVLKTNCS 318
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IA +L++R+I G+I++DFIDM ++ + E K + D + ++ +LS GL+
Sbjct: 319 AATEIAYQLQIRNITGVIIIDFIDMESQRDQLQLLEHFNKELSLDDAKPQIVQLSELGLV 378
Query: 592 EITRKRVRPSVTFMIS 607
E+TR+R S+ +IS
Sbjct: 379 ELTRRRQGKSLYELIS 394
>sp|O78453|RNE_GUITH Ribonuclease E homolog OS=Guillardia theta GN=rne PE=3 SV=1
Length = 429
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 492 GGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI-LDVNLAAAKQIARELRLRDIGGIIV 550
G +VI +TEAL+SIDVN G H S + + L NL A+K I +E++LR++ G+IV
Sbjct: 275 GIFIVICKTEALISIDVNSG----SHSSRVSQNLSLHTNLIASKSIIKEIKLRNLAGVIV 330
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DF+DM ++ + + + + M+ + +LS GL+E+TRKR
Sbjct: 331 IDFVDMIHQKDQIHLLAFFRYLLNINSVMITLIQLSDIGLLELTRKR 377
>sp|Q9TL10|RNE_NEPOL Ribonuclease E homolog OS=Nephroselmis olivacea GN=rne PE=3 SV=1
Length = 375
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 482 MLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELR 541
++ ++PL +GG+++IE TE S D+N G G+ SK A N A IA+++
Sbjct: 261 IVQPQIPLRSGGTMIIEFTEIGWSFDINSGIGL--EIGSKTCA----NEEAIYAIAQQIL 314
Query: 542 LRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
LR + G I++DFI D R+ + +E+D +++ +S GL+ + R R
Sbjct: 315 LRSMHGFILIDFIGDIDLEKLRVNLIQFTSLLEQDSYHIRIISISADGLVCVIRHR 370
>sp|Q8TY07|AUBA_METKA RNA-binding protein AU-1 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=aubA PE=3 SV=1
Length = 484
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 324 WILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGL 382
+ ++ + I VSRKI ER RLK + + L PEG+GL RT A G S EEL ++++ L
Sbjct: 160 YAVLVPVEGIRVSRKIRDERERERLKRLGEALVPEGWGLIWRTAAEGKSGEELAEEIDDL 219
Query: 383 LSTWKNIMEHAK 394
+ K + + A+
Sbjct: 220 IEERKQLFKRAE 231
>sp|Q7NGM0|PNP_GLOVI Polyribonucleotide nucleotidyltransferase OS=Gloeobacter violaceus
(strain PCC 7421) GN=pnp PE=3 SV=1
Length = 713
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 102 LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTK 161
++E + V+ D VYLG VT+++PN+ GAFV + + L+ I E R R
Sbjct: 620 IIEGMTRTVEVDKVYLGTVTRIIPNL-GAFVEVMPGKEGLVHISQLAE------HRVRKV 672
Query: 162 KQEVN 166
+ E+N
Sbjct: 673 EDELN 677
>sp|O28783|IORA_ARCFU Indolepyruvate oxidoreductase subunit IorA OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=iorA PE=3 SV=1
Length = 623
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 503 LVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNK 562
LV +D N GM GH + + +R+ DI V+F+++ + N
Sbjct: 472 LVILD-NSTTGMTGHQPHP-----GTGFRGCGEAGKAVRIEDIVRGCGVEFVEVVNPYNV 525
Query: 563 RLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQ 614
R + + +++A+ D V ++ L R+R VT+ ++E CT C
Sbjct: 526 RKMVDVLRRALNHDGVAVVIARQPCAILWSRARRREGKIVTYKVTEDCTLCM 577
>sp|Q076A3|MYH13_CANFA Myosin-13 OS=Canis familiaris GN=MYH13 PE=3 SV=1
Length = 1940
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 334 GVSRKITGVERTRLKVIAKTLQPEGFGLTI---RTVAAGHSLEELQKDLEGLLSTWKNIM 390
VS K +E+T+ + LQ E L + RT A L+ Q+DL+ +L+ WK +
Sbjct: 1410 AVSSKCASLEKTK-----QRLQGEVDDLMLDLERTSTARAILDRKQRDLDKVLAEWKQKL 1464
Query: 391 EHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQ 450
+ +++ AA +G R++ + +Q+ + E VVD T LQ
Sbjct: 1465 DGSQAELEAAQKG---------SRSLSTEIFKMQNAYEE-----VVDQLETLRRENKNLQ 1510
Query: 451 DIAPDLCDRVELYDKRIPLFDKF--NIEEEINNMLSKRVPLPNGGSLVIEQTEAL 503
+ DL +++ K + +K +E+E +++ + GSL E+++ L
Sbjct: 1511 EEISDLTEQIAETGKHLQEVEKSKKQVEQEKSDLQVALEEVEASGSLEHEESKIL 1565
>sp|A2BN82|AUBA_HYPBU RNA-binding protein AU-1 OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=aubA PE=3 SV=1
Length = 473
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 38/167 (22%)
Query: 323 FWILITSCD-RIGVSRKITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLE 380
+ ILI S + R+ +S + E R L IA + +G+ + R+ + EEL+K L
Sbjct: 165 YAILIESSEPRVTISEHVRSPEKRALLAAIATSFTEQGYAVHWRSSSQHAEREELEKHLR 224
Query: 381 GLLSTWKNIMEHAKSAALAADEGV--EGAVPILLH------------------------- 413
L + + A+ A GV EG +L+H
Sbjct: 225 QL----REALAEARKRAEEGPPGVYSEGEAVVLVHLSSADKQKLDEIRDSVVATIPYHHT 280
Query: 414 -RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
+++ +LS V DY EKVK + VDS + V + L+ +A DL R
Sbjct: 281 VKSLQPSLSKVIDY-AEKVKALGVDSEKL---VRALLELVAEDLASR 323
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo
sapiens GN=BAZ2B PE=1 SV=3
Length = 2168
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 518 GSSKEKAILD---VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE 574
G+SK + + D + + RE R+R+ GG + + A K Y EV
Sbjct: 732 GTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEV----- 786
Query: 575 RDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEIS 634
+ LSR+G+M+I+R S + + G + ++ K E I
Sbjct: 787 -------IKYLSRNGIMDISRDNFSFSAKIRVGDFYEARDGP---QGMQWCLLKEEDVIP 836
Query: 635 RLLAMMEQKADPENP 649
R+ AM ++ P NP
Sbjct: 837 RIRAMEGRRGRPPNP 851
>sp|Q00804|AT2B1_RABIT Plasma membrane calcium-transporting ATPase 1 OS=Oryctolagus
cuniculus GN=ATP2B1 PE=2 SV=2
Length = 1249
Score = 33.1 bits (74), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 86/213 (40%), Gaps = 39/213 (18%)
Query: 251 DGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKG 310
DGE P KSE D + K + EK+ LQ K TK+ VQ+ K GL
Sbjct: 327 DGEPMEMQPLKSEEGGDGDE---KDKKKANLPKKEKSVLQ-GKLTKLAVQIGKAGLLMSA 382
Query: 311 PT---LTAYPKLRSRFWI----LITSCDRIGVSRKITGVERTRLKVIAKTLQ----PEGF 359
T L Y L FW+ + C I + + + +I T+ PEG
Sbjct: 383 ITVIILVLY-FLIDTFWVQKRPWLAECTPIYIQYFV------KFFIIGVTVLVVAVPEGL 435
Query: 360 GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQT 419
L + T++ +S+ E+ KD N++ H L A E + A I + T
Sbjct: 436 PLPV-TISLAYSVNEMMKD--------NNLVRH-----LDACETMGNATAICSDKTGTLT 481
Query: 420 L---SIVQDYFNEKVKKMVVDSPRTYHEVTSYL 449
+ ++VQ Y NEK K V + + SYL
Sbjct: 482 MNRMAVVQAYINEKHYKKVPEPEPYPPNILSYL 514
>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790) GN=hmu PE=4
SV=1
Length = 9159
Score = 33.1 bits (74), Expect = 8.3, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 171 AALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSI 230
+ALE+ + D+ S N + ++ SQ+D + ++ D D S+ N S
Sbjct: 8377 SALEDDSSNQDSGDDSSNQDSGDDSSSQND----DGDNSSNQDSGDDSSSQNDDGDNSSN 8432
Query: 231 IDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ 290
D G+ + D +GD+ + +S S+++ DDS + + G S G+ + Q
Sbjct: 8433 QDSGDDSSSQND--DGDNSSNQDSGDDSSSQNDDGDDSSSQNDDGDNSSNQDSGDDSSSQ 8490
Query: 291 VQKG 294
G
Sbjct: 8491 NDDG 8494
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,763,110
Number of Sequences: 539616
Number of extensions: 11940625
Number of successful extensions: 47392
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 42639
Number of HSP's gapped (non-prelim): 3615
length of query: 748
length of database: 191,569,459
effective HSP length: 125
effective length of query: 623
effective length of database: 124,117,459
effective search space: 77325176957
effective search space used: 77325176957
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 65 (29.6 bits)