Query 004500
Match_columns 748
No_of_seqs 217 out of 864
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 00:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2065 Gamma-tubulin ring com 100.0 1E-99 2E-104 767.6 51.8 672 1-738 1-679 (679)
2 KOG2001 Gamma-tubulin complex, 100.0 1.9E-81 4.1E-86 664.9 49.3 611 1-728 97-723 (734)
3 PF04130 Spc97_Spc98: Spc97 / 100.0 9.2E-68 2E-72 608.6 48.8 533 4-644 1-542 (542)
4 KOG2000 Gamma-tubulin complex, 100.0 4.9E-56 1.1E-60 499.6 37.6 533 1-667 207-758 (879)
5 KOG4344 Uncharacterized conser 100.0 2.2E-31 4.8E-36 279.0 33.1 653 51-721 330-1112(1121)
6 PF14609 GCP5-Mod21: gamma-Tub 61.4 4.4 9.6E-05 43.9 1.6 59 1-78 185-244 (653)
7 KOG2000 Gamma-tubulin complex, 39.8 1.1E+02 0.0024 36.9 8.6 123 501-646 588-711 (879)
8 KOG4344 Uncharacterized conser 39.5 5.2 0.00011 44.7 -2.1 126 112-237 453-583 (1121)
9 PF08673 RsbU_N: Phosphoserine 25.7 2.2E+02 0.0048 23.2 5.7 50 612-664 23-73 (77)
10 KOG3666 Uncharacterized conser 25.4 6.9E+02 0.015 29.2 11.1 78 623-700 488-584 (1141)
11 PF09712 PHA_synth_III_E: Poly 22.5 9E+02 0.02 25.3 13.6 108 585-693 164-287 (293)
No 1
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=9.8e-100 Score=767.56 Aligned_cols=672 Identities=39% Similarity=0.626 Sum_probs=557.4
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCC-cCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 004500 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDIS-FIEPSERDLLEKIITLGFYYREIDRFASK 79 (748)
Q Consensus 1 ml~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~-~l~~s~~~ll~~i~~lg~~y~~l~~fv~~ 79 (748)
||||+|+||.|++|+.|.+..- ..+...+.++| +++||||+++++++.+|..|+.+.+|.+-
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R-----------------~~GLa~~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtsw 63 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKAR-----------------FNGLAETTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSW 63 (679)
T ss_pred CHHHHHHHHhCCChhheeehhh-----------------ccccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999751 11333445555 89999999999999999999999999754
Q ss_pred hhccccccccCCCchhhhhhhh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhhhhhh
Q 004500 80 ARNLSWIRSANASPLERAAELS-KSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVL 158 (748)
Q Consensus 80 ~~~~~~i~s~~~~~~~~~~~~~-~~~~~~~g~~~~A~~~~l~~~L~~y~~~i~~lE~~~~~~~~~sL~~l~~~l~~~~~~ 158 (748)
|++...+|..++++.+ ......+|.|.+|||.||...|++|+..|..||+.++.++.++|++++..|..++.+
T Consensus 64 ------IrsvTsH~~~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~L 137 (679)
T KOG2065|consen 64 ------IRSVTSHSSGRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPL 137 (679)
T ss_pred ------HHHhccCcccccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhh
Confidence 4443334444444333 233466899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCccchHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCC
Q 004500 159 FPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD 238 (748)
Q Consensus 159 l~~L~~lv~~i~~~~~~g~~lL~~L~~~~~~G~~~~~~~~~~Ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFFI~~~~~~~ 238 (748)
++.++++|.+|...+++||+||..||++ +||.|+++..+.++++.|..++++++..||.+|.|.||++||||......+
T Consensus 138 fp~~~~vi~eI~~~~irGcqlL~~l~k~-HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~ 216 (679)
T KOG2065|consen 138 FPFMRNVITEIHVLNIRGCQLLHNLHKQ-HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDA 216 (679)
T ss_pred hHHHHHHHHHHHhcccchhHHHHHHHHh-ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCC
Confidence 9999999999988999999999999998 699999999999999999999999999999999999999999999888777
Q ss_pred cccCCCCccchHhhh--hhcc-CCCCccccccceeeecCCCCcccChhHHHHHHhhhhHHHHhhCCCccchhhhhhhhcc
Q 004500 239 TEHCSSHSDVSEKLA--RLST-DYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRS 315 (748)
Q Consensus 239 ~~~~~~~~~~~~~l~--~~~~-~~~~~~~W~~~y~l~~~~lP~Fl~~~~a~~Il~~GKsl~~Lr~~~~~~~~~~~~~~~g 315 (748)
.+..|..++..++|. ++.. .-..-....-.|..+....|.|.+-..+.++|++|+...+.+.....
T Consensus 217 ~d~ss~~ee~~e~L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~----------- 285 (679)
T KOG2065|consen 217 VDGSSFSEEATESLLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNV----------- 285 (679)
T ss_pred CCcccCchhhhhhhhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccce-----------
Confidence 777766666665543 1110 00001112235566666788888878888999999988887754211
Q ss_pred cccccccccccccccccchhhhcccccCCCcchHHHHHHHHhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcH
Q 004500 316 SQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANL 395 (748)
Q Consensus 316 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~s~~L~~~l~~~~~L 395 (748)
+.+.-.+..++ .+|..++.+..+-.++++.+ ++|++++.+|++.+.|+...||..|++++..++.+||++++++.+|
T Consensus 286 -~~i~F~~~~~~-~~e~eld~dlt~G~ll~~~E-d~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e~DL 362 (679)
T KOG2065|consen 286 -KVINFKTDPLA-AKEAELDSDLTYGQLLSGRE-DEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNEVDL 362 (679)
T ss_pred -eeeeccCCchh-hHHhhccccchhhhhcCCCh-HHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 01110011111 11222222222334777554 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCccccccchHHHHHHhhhcccccccCCceEEEecCCCcccCCCc
Q 004500 396 NGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPH 475 (748)
Q Consensus 396 ~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~~L~~~l~~a~~~s~~~~d~~~~~l~~~~~~~~~~~~~~~ 475 (748)
..||++||+|||||+|||++.|++.+...|+.|++..+ +++++.+|+.|+..+..++|++++++++.++..|.++ +
T Consensus 363 ~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~t-E~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~---~ 438 (679)
T KOG2065|consen 363 EGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERT-EKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSE---P 438 (679)
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhc-ccccchhhhhhhhhccccccccccceEEEecccCCCC---c
Confidence 99999999999999999999999999999999999988 8999999999999999999999999999998776321 1
Q ss_pred chhhhhhcccCCCCCCccCCCCCCCCcccccceeeeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004500 476 VDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVM 555 (748)
Q Consensus 476 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~L~y~v~wPL~lIlt~~~~~~Y~~iF~fLl~lk~~~~~L~~~w~~~~ 555 (748)
.|.... ++|.+ ...+..+.+||+++.|.|+|+|||+++|||.++++||.||+||+++||.++.|+++|..+|
T Consensus 439 aD~~~~------~tGka--~ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm 510 (679)
T KOG2065|consen 439 ADTSDF------NTGKA--FLTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQM 510 (679)
T ss_pred cchhhh------ccCcc--cccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12221 2233568899999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhcccccccccchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 004500 556 HQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEY 635 (748)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VI~~~w~~~~~~l~~~~dld~l~~~H~~f 635 (748)
.+.+.. +.++.-+ +.+ .|++|+.|.+|++++|+|++.||||++|..++..++...||+.|..+|+.|
T Consensus 511 ~r~h~~-----s~q~~d~------~~I--~WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~f 577 (679)
T KOG2065|consen 511 WRAHSA-----SDQPPDN------KII--TWRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVF 577 (679)
T ss_pred HHHHhh-----ccCCCCC------ccc--hHHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 888752 1111001 122 399999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcCC--CChhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcHHHH
Q 004500 636 LSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESS--ENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLR 713 (748)
Q Consensus 636 L~~i~~~cfL~~~~i~~~i~~il~l~~~F~~~~~~~~~~--~~~~~i~~~~~~F~~~~~~L~~~L~~~~~~~~~~~~~l~ 713 (748)
|.+++.+|||..++++.++.+|+++|.+||+.+.+..++ ...++++++.+.|.++...|+++|.+ +.+++..+.|+
T Consensus 578 LsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~Q~~~P~d~~~~el~~l~e~F~~qs~sL~~iL~s--vk~~q~~~~L~ 655 (679)
T KOG2065|consen 578 LSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMTQTKDPSDDLEDELDQLNESFGVQSASLIQILVS--VKSAQCLGPLS 655 (679)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCCCcccchHHHHHHHHHhhhhHHHHHHHHHH--ccccccccHHH
Confidence 999999999999999999999999999999887766544 46789999999999999999999999 88889999999
Q ss_pred HHHHhhccchhhhcccccccccccC
Q 004500 714 RFLLRLNFNSFFEMTARGVLNVVRQ 738 (748)
Q Consensus 714 ~Ll~RLdfN~~y~~~~~~~~~~~~~ 738 (748)
+|++|||||.||+. +||.+|.+++
T Consensus 656 qlLLRLdfN~~y~a-ArG~ln~~~q 679 (679)
T KOG2065|consen 656 QLLLRLDFNCWYSA-ARGSLNTSAQ 679 (679)
T ss_pred HHHHHhchhHHHHh-cccccccccC
Confidence 99999999999997 8999998874
No 2
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=1.9e-81 Score=664.87 Aligned_cols=611 Identities=22% Similarity=0.396 Sum_probs=496.4
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004500 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA 80 (748)
Q Consensus 1 ml~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s~~~ll~~i~~lg~~y~~l~~fv~~~ 80 (748)
++.|+|+||.|++|.++.++....+.+.. -.+....|.|.|+ ++-+.|+++++++++|.+|..+++|++..
T Consensus 97 li~dLl~af~Gv~~ryV~~Q~~~~s~~~~------~~~~~~~F~v~~~---fd~~ir~la~eilpl~~yy~~v~~fie~~ 167 (734)
T KOG2001|consen 97 LIDDLLYAFVGVEGRYVSPQYMIISEAYE------KWIDSIFFMVLPR---FDLAIRELAEEILPLASYYLLVQDFIEET 167 (734)
T ss_pred HHHHHHHHHcCCCcceeecchhhhhhhhh------hhccCcceeeccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999997654332110 0113678999998 46799999999999999999999999983
Q ss_pred hccccccccCCCchhhhhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhhhhhhhh
Q 004500 81 RNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFP 160 (748)
Q Consensus 81 ~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~i~~lE~~~~~~~~~sL~~l~~~l~~~~~~l~ 160 (748)
. ....|.+.+|+|+|+++.|.+|+..|.++|.+...+ .+|+..++..++|+...++
T Consensus 168 s-----------------------~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~~-~lslq~L~~y~qP~m~~m~ 223 (734)
T KOG2001|consen 168 S-----------------------FFEYGQVNHALAAALRELLYDYYELISQLEQELRTN-RLSLQDLWFYMQPMMRSMR 223 (734)
T ss_pred c-----------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHhhhHHHHH
Confidence 1 124799999999999999999999999999999876 5899999999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHhhh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCC
Q 004500 161 PLYELVLEIERDDIRGGQLLNLLHKRC--HCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD 238 (748)
Q Consensus 161 ~L~~lv~~i~~~~~~g~~lL~~L~~~~--~~G~~~~~~~~~~Ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFFI~~~~~~~ 238 (748)
.|+.....+..+.++||++|+.|++.+ ..||+..+.++.+++..+++||+.|+..|+..|.+.|||+||||..+....
T Consensus 224 ~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k 303 (734)
T KOG2001|consen 224 RLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDNLITK 303 (734)
T ss_pred HHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhcchhh
Confidence 888777776677899999999999999 689999999999999999999999999999999999999999999983322
Q ss_pred cccCCCCccchHhhhhhccCCCCccccccceeeecCCCCcccChhHHHHHHhhhhHHHHhhCCCccchhhhhhhhccccc
Q 004500 239 TEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQK 318 (748)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~y~l~~~~lP~Fl~~~~a~~Il~~GKsl~~Lr~~~~~~~~~~~~~~~g~~~ 318 (748)
... .+|.+++||..+|+|+++.+|.|+. +.|+|||.+||++|++|.|+....+
T Consensus 304 ~~l---------------~ed~~d~YW~~RY~ir~dqiP~fL~-~~adkIL~tGKYLNVvReC~~~v~~----------- 356 (734)
T KOG2001|consen 304 EDL---------------PEDYTDKYWDQRYTIRKDQIPGFLL-SEADKILRTGKYLNVVRECGKIVTI----------- 356 (734)
T ss_pred hcC---------------chhhhHHHHHHhheechhhcchHHH-HHHHHHHHhhhHHHHHHHhCccCCC-----------
Confidence 211 3567889999999999999999997 8999999999999999999865211
Q ss_pred ccccccccccccccchhhhcccccCCCcchHHHHHHHHhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 004500 319 IQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGH 398 (748)
Q Consensus 319 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~s~~L~~~l~~~~~L~~h 398 (748)
| ...+++ .....++...++..|+++|..++..++++|+++++|..|
T Consensus 357 --------------------------p-~~~n~~-------~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~h 402 (734)
T KOG2001|consen 357 --------------------------P-QSSNEI-------NDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGH 402 (734)
T ss_pred --------------------------C-cchhhh-------ccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1 000000 001123346789999999999999999999999999999
Q ss_pred HHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCccccccchHHHHHHh-hhcccccccCCceEEEecCCCcccCCCcch
Q 004500 399 LKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAI-KTISEEDKYFSRVSLRMPSFGITVKSPHVD 477 (748)
Q Consensus 399 L~~l~~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~~L~~~l~~a~~-~s~~~~d~~~~~l~~~~~~~~~~~~~~~~~ 477 (748)
|+.||+||||.+|||+.+|++.+.++|.++.+.++ ..+|.+.|+.|++ .|.+.+||+.+.+.+.+....+...
T Consensus 403 LrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~-p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~q----- 476 (734)
T KOG2001|consen 403 LRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENIS-PEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQ----- 476 (734)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcC-HHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHH-----
Confidence 99999999999999999999999999999998887 7889999999999 6778899999999999865432100
Q ss_pred hhhhhcccCCCCCCccCCCCCC-CCcccccceeeeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004500 478 LLKAKAYADGTSGAALSSGNSD-ISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMH 556 (748)
Q Consensus 478 ~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~L~y~v~wPL~lIlt~~~~~~Y~~iF~fLl~lk~~~~~L~~~w~~~~~ 556 (748)
.....++.+.+.+++....+.. ...+|++++.++|+|||||++||++++|.+||.|||+++.+|++++.|..+|.....
T Consensus 477 l~~~l~ie~~e~~ans~~dP~~~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~ 556 (734)
T KOG2001|consen 477 LSHILAIEPEEESANSQADPLEHLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSK 556 (734)
T ss_pred HHHHHhcCccccccccccCcchhccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0001122222223332111211 578999999999999999999999999999999999999999999999999987543
Q ss_pred hhchhhhcccccccccchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 004500 557 QDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYL 636 (748)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VI~~~w~~~~~~l~~~~dld~l~~~H~~fL 636 (748)
.+.. . ...+++.+..+.||++|++||.+|.+|++.+||||+|..|+..+++++++|+++.-|+.||
T Consensus 557 ~r~~------~--------~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fl 622 (734)
T KOG2001|consen 557 ARSS------N--------TKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFL 622 (734)
T ss_pred hhcc------c--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2210 1 1234678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhcCC---------CChhHHHHHHHHHHHH-HHHHHHHhhcccccC
Q 004500 637 SALISQSFLDLG-SVSRILDGIMKLCIQFCWAIENQESS---------ENTPELEHITEEFNKK-SNSLYTILRSTRLAG 705 (748)
Q Consensus 637 ~~i~~~cfL~~~-~i~~~i~~il~l~~~F~~~~~~~~~~---------~~~~~i~~~~~~F~~~-~~~L~~~L~~~~~~~ 705 (748)
++|++.|+|+.+ .+.+.+.++..+|..||++++...+. ..+.+.+.-.+.+... +.++-.+++. +.
T Consensus 623 d~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~~~~~~~~~~~~~~~d~~~k~~~t~li~~leei~~~---~~ 699 (734)
T KOG2001|consen 623 DTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSDPTDEEKNSVGHPQFDEGRKEDDTLLISKLEEIISN---AD 699 (734)
T ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccchhhhhhhhhHHHHHHHHHHHHH---hH
Confidence 999999999986 78999999999999999998765432 1112333334444544 3333334442 33
Q ss_pred CCCcHHHHHHHHhhc-cchhhhcc
Q 004500 706 SQRAPFLRRFLLRLN-FNSFFEMT 728 (748)
Q Consensus 706 ~~~~~~l~~Ll~RLd-fN~~y~~~ 728 (748)
..-..++..|+.||+ |+.|+++.
T Consensus 700 ~~f~~~l~~L~~rlsk~~~~e~s~ 723 (734)
T KOG2001|consen 700 KNFRDCLKNLLQRLSKFSFFESSS 723 (734)
T ss_pred HHHHHHHHHHHHHccccccccHHH
Confidence 344568999999999 88888743
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=9.2e-68 Score=608.63 Aligned_cols=533 Identities=29% Similarity=0.501 Sum_probs=360.0
Q ss_pred HHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCC--CcCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004500 4 ELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDI--SFIEPSERDLLEKIITLGFYYREIDRFASKAR 81 (748)
Q Consensus 4 dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~--~~l~~s~~~ll~~i~~lg~~y~~l~~fv~~~~ 81 (748)
|+|++|+|++|.+|.+++. ..+|.+.+++ +.+++++++++++++++|++|++|++|++.+.
T Consensus 1 dll~~L~G~~s~~f~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~ 63 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKD-----------------SDRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVS 63 (542)
T ss_dssp HHHHHHTT---SSSEEETT------------------TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHccCCCCceEEEeCC-----------------CCeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999873 5789999886 45789999999999999999999999999742
Q ss_pred ccccccccCCCchhhhhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhhhhhhhhH
Q 004500 82 NLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPP 161 (748)
Q Consensus 82 ~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~i~~lE~~~~~~~~~sL~~l~~~l~~~~~~l~~ 161 (748)
.. ....|++.+|||++|+++|.+|++.|..+|+++..++.+||..+...++++...++.
T Consensus 64 ~~---------------------~~~~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~ 122 (542)
T PF04130_consen 64 SS---------------------SSERGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRLEA 122 (542)
T ss_dssp -------------------------S-SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHHHH
T ss_pred cC---------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 10 113799999999999999999999999999999887789999999999999999999
Q ss_pred HHHHHHHH----hcCCCccchHHHHHHhhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEee
Q 004500 162 LYELVLEI----ERDDIRGGQLLNLLHKRC---HCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQ 234 (748)
Q Consensus 162 L~~lv~~i----~~~~~~g~~lL~~L~~~~---~~G~~~~~~~~~~Ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFFI~~~ 234 (748)
|++++..+ .....+|+.||+.||+.. .+|++..++++..|+..|++||+++|..||.+|+|.||++||||.++
T Consensus 123 L~~l~~~~~~~~~~~~~~g~~lL~~L~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~ 202 (542)
T PF04130_consen 123 LADLIQEIIQLSLSQNLRGGQLLSILYERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRN 202 (542)
T ss_dssp HHHHHHHH----HHHT--THHHHHHHHHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE-
T ss_pred HHHHHHHHhhhccccCCcHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeec
Confidence 99999986 346789999999999999 78999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCccchHhhhhhccCCCCccccccceeeecCCCCcccChhHHHHHHhhhhHHHHhhCCCccchhhhhhhhc
Q 004500 235 EDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITR 314 (748)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~y~l~~~~lP~Fl~~~~a~~Il~~GKsl~~Lr~~~~~~~~~~~~~~~ 314 (748)
.... ......+|.++|.++.+++|.|++.++|++|+.+||++++|+.++..........
T Consensus 203 ~~~~-------------------~~~~~~~w~~~f~l~~~~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~-- 261 (542)
T PF04130_consen 203 KESN-------------------SESSEDFWDDRFVLRESRVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQE-- 261 (542)
T ss_dssp ----------------------------------EEE-GGGS-TTS-HHHHHHHHHHHHHHHT------S------TT--
T ss_pred cccc-------------------CcccchhhccCEEECcccCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhcc--
Confidence 4321 1234789999999999999999988999999999999999999976521100000
Q ss_pred ccccccccccccccccccchhhhcccccCCCcchHHHHHHHHhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004500 315 SSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRAN 394 (748)
Q Consensus 315 g~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~s~~L~~~l~~~~~ 394 (748)
. ... ... . +.............+.....++..|++.+..+++.++++++++++
T Consensus 262 ----------~-------~~~-------~~~-~--~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~ 314 (542)
T PF04130_consen 262 ----------L-------SSD-------LCL-S--DKESSESSSLQPFEPLDQDKLESKIESQYKLVNKSLLDLLFEDYN 314 (542)
T ss_dssp ------------------SHH-------H-------HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ----------c-------hhh-------hhh-h--hhhhhhHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 000 000 0 000001111122234567889999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCccccccchHHHHHHhhhcccccccCCceEEEecCCCcccCCC
Q 004500 395 LNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSP 474 (748)
Q Consensus 395 L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~~L~~~l~~a~~~s~~~~d~~~~~l~~~~~~~~~~~~~~ 474 (748)
|.+||+++|+||||++|||+..|++.+++.+..+..... ...++..++.++........+...... . .. .....
T Consensus 315 l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~- 388 (542)
T PF04130_consen 315 LLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSS-DSNLNSILQEALRASSADWSDESSNLR-S-GE--ISSST- 388 (542)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTH-HHHHHHHHHHHHHHTT---TTSGGGEE-E-----------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccc-hhhHHHHHHHHHHhCccccccchhhhh-h-cc--ccccc-
Confidence 999999999999999999999999999999998877655 556777777777654432221111100 0 00 00000
Q ss_pred cchhhhhhcccCCCCCCccCCCCCCCCcccccceeeeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004500 475 HVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASV 554 (748)
Q Consensus 475 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~L~y~v~wPL~lIlt~~~~~~Y~~iF~fLl~lk~~~~~L~~~w~~~ 554 (748)
....+... ............+..+|+.+.|+|++||||++|||+++|.+|++||+|||++|++++.|+++|...
T Consensus 389 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~ 462 (542)
T PF04130_consen 389 SLSSNLSS------NDSSSRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQL 462 (542)
T ss_dssp -----------------------------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhh------hhhhcccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000001122346889999999999999999999999999999999999999999999999999987
Q ss_pred hhhhchhhhcccccccccchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004500 555 MHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE 634 (748)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VI~~~w~~~~~~l~~~~dld~l~~~H~~ 634 (748)
+...+. . +. . ....+...++++.+|++|+||+++|++|++++||++.|.+|.++|+++.|+|+|+++|++
T Consensus 463 ~~~~~~-~-----~~---~-~~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~ 532 (542)
T PF04130_consen 463 RRLSRK-F-----GK---P-DRQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDD 532 (542)
T ss_dssp TSGGG------------------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HHHhhh-c-----cc---h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 643321 0 00 0 001113456779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 004500 635 YLSALISQSF 644 (748)
Q Consensus 635 fL~~i~~~cf 644 (748)
||++|+++||
T Consensus 533 yL~~i~~~~f 542 (542)
T PF04130_consen 533 YLDRILRRCF 542 (542)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999998
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=4.9e-56 Score=499.63 Aligned_cols=533 Identities=23% Similarity=0.381 Sum_probs=427.9
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004500 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA 80 (748)
Q Consensus 1 ml~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s~~~ll~~i~~lg~~y~~l~~fv~~~ 80 (748)
.|++++|+++|+.|.++..... ...|.+...++ +..+...++..+.++|.+|.++..|+...
T Consensus 207 lvk~v~yvl~gv~~~~~~~~~~-----------------~~~~~~k~~~~-~~~~~~~l~~~lSelg~l~~~~~~~~~~~ 268 (879)
T KOG2000|consen 207 LVKDVLYVLQGVDGALFSFDSE-----------------LECFVVKGPVH-LPRGISGLLYLLSELGVLYQRVSTFSDQL 268 (879)
T ss_pred HHHHHHHHHhhhhhceeecccH-----------------Hhhhhhhcccc-chhhHHHHHHHHHHHhHHHHhhhhhcchh
Confidence 3789999999999999999863 45666655544 45678899999999999999999999884
Q ss_pred hccccccccCCCchhhhhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C---------CcHHHHHH
Q 004500 81 RNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSET-M---------PILATVTQ 150 (748)
Q Consensus 81 ~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~i~~lE~~~~~~~-~---------~sL~~l~~ 150 (748)
.-.. ....|++.|||+.++++.|++|+..+..+..++.-+. . ++|..++.
T Consensus 269 ~l~~--------------------~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la 328 (879)
T KOG2000|consen 269 VLDN--------------------PYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLA 328 (879)
T ss_pred hhhh--------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHH
Confidence 2100 1125999999999999999999999999887764321 1 23333344
Q ss_pred HHhhhhhhhhHHHHHHHHHhcCCCccchHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcce
Q 004500 151 GLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFF 230 (748)
Q Consensus 151 ~l~~~~~~l~~L~~lv~~i~~~~~~g~~lL~~L~~~~~~G~~~~~~~~~~Ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFF 230 (748)
.+-....+|+.+..++... ...+|+.++..++.+..+|++.++.+...+|...+.|+.+++..||..|.+.|+|+|||
T Consensus 329 ~~~~~~~rl~i~~~l~e~~--~~~~g~~l~~~~~~f~~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFf 406 (879)
T KOG2000|consen 329 WIYEPGIRLQILCKLVEHC--QVPKGGKLLSAVHEFLTHGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFF 406 (879)
T ss_pred HHhhcchhhhHHHHHHHHh--cccCCCcchHHHHHHHHhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceE
Confidence 4444456777888888765 67789999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCcccCCCCccchHhhhhhccCCCCccccccceeeecCCCCcccChhHHHHHHhhhhHHHHhhCCCccchhhhh
Q 004500 231 IRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQ 310 (748)
Q Consensus 231 I~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~y~l~~~~lP~Fl~~~~a~~Il~~GKsl~~Lr~~~~~~~~~~~ 310 (748)
|.+++..+.. ..+..|++.|.++.+++|.||+.++|.|||.|||++++|+.||....|.+.
T Consensus 407 V~~~~~~~~~-------------------~~d~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e 467 (879)
T KOG2000|consen 407 VAENPDPGSV-------------------KDDRLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDE 467 (879)
T ss_pred EeccCCCCcc-------------------ccccccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccc
Confidence 9999875531 236899999999999999999999999999999999999999976433221
Q ss_pred hhhcccccccccccccccccccchhhhcccccCCCcchHHHHHHHHhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 004500 311 LITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVV 390 (748)
Q Consensus 311 ~~~~g~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~s~~L~~~l~ 390 (748)
... ...+ .. ...++ + ..-....++..|+.+|....++|..+|.
T Consensus 468 ~~~---------------------~~~~-----~~-s~~~~-------l---~~~~~~~l~~~v~~ay~e~inhl~~ll~ 510 (879)
T KOG2000|consen 468 IDA---------------------KASV-----EE-SSTRD-------L---EYASDVGLLGSVSEAYSEIVNHLNDILE 510 (879)
T ss_pred hhH---------------------HHHH-----hh-hhhhh-------h---ccCCChhHHHHHhhhhccchHHHHHHHH
Confidence 100 0000 00 00000 0 1113467889999999999999999999
Q ss_pred hhhcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCccccccchHHHHHHhhh-ccccc--ccCCceEEEecCC
Q 004500 391 VRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKT-ISEED--KYFSRVSLRMPSF 467 (748)
Q Consensus 391 ~~~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~~L~~~l~~a~~~s-~~~~d--~~~~~l~~~~~~~ 467 (748)
+.+++.+|+.++|+|.|+|+|||+..+++.+...+..|+.... ++++...++.|++++ .+..| ..+.|+.+++.+.
T Consensus 511 ~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~-~~~lt~~ldsaiR~s~na~yd~~~vL~Rld~~~~~~ 589 (879)
T KOG2000|consen 511 EVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLP-EHKLTGVLDSAVRSSLNAQYDDRDVLNRLDVRVLKL 589 (879)
T ss_pred HHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhh-HhHHHHHHHHHHhhhhccccCChhhhhhhhhHhhhc
Confidence 9999999999999999999999999999999999999987776 889999999999998 65433 3456666665421
Q ss_pred CcccCCCcchhhhhhcccCCCCCCccCCCCCCCCcccccceeeeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004500 468 GITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMEL 547 (748)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~L~y~v~wPL~lIlt~~~~~~Y~~iF~fLl~lk~~~~~L 547 (748)
..++++|+.+.++|.+..|+++++|++++.+|-+||+|||++||+++.|
T Consensus 590 -------------------------------~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~~L 638 (879)
T KOG2000|consen 590 -------------------------------SHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEFLL 638 (879)
T ss_pred -------------------------------cCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHhhhhchhhhcccccccccchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H
Q 004500 548 -EKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHD-F 625 (748)
Q Consensus 548 -~~~w~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VI~~~w~~~~~~l~~~~d-l 625 (748)
.++|+..|...+. .+ ..+ +..+ .......+++..+..+|.||+.++++|+.++|||.+|+.|...++.+.+ +
T Consensus 639 ~~~i~k~~m~~~~~--~~--~~~-~~~i-~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~l 712 (879)
T KOG2000|consen 639 ELHIWKMLMKDCNV--AK--RDR-LLKI-PEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPL 712 (879)
T ss_pred HHHHHHhhhhhhcc--cc--cch-hcch-HHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCch
Confidence 8899988732110 00 010 0011 1122346778889999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHH
Q 004500 626 TELVGFHQEYLSALISQSFLDLG----SVSRILDGIMKLCIQFCWA 667 (748)
Q Consensus 626 d~l~~~H~~fL~~i~~~cfL~~~----~i~~~i~~il~l~~~F~~~ 667 (748)
|..+++|+-|+++|.-+|++.++ .+...+..+++.++++.+.
T Consensus 713 d~~~eah~~~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~ 758 (879)
T KOG2000|consen 713 DFQLEAHRPFLDTISIRGILQEKASVESIEHSLSALLELILNLAEL 758 (879)
T ss_pred HHHHhhccccccceeecccccCcccchhhHHhHHHHHHHHhhhhcc
Confidence 99999999999999999999873 2566777777777776654
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=278.99 Aligned_cols=653 Identities=18% Similarity=0.191 Sum_probs=406.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCchhhhhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 004500 51 FIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAV 130 (748)
Q Consensus 51 ~l~~s~~~ll~~i~~lg~~y~~l~~fv~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~i 130 (748)
..+|..+..++.|..+|...+.|..|+......+ + +.-.++.....+..+..+-..-+||..++-+..-.|.+.+
T Consensus 330 lahpcdnfaleqiaalghnafgLlafidekmghe---p--cllleglfmfpkkascafFefdkAfmralvkdfisfkeel 404 (1121)
T KOG4344|consen 330 LAHPCDNFALEQIAALGHNAFGLLAFIDEKMGHE---P--CLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEEL 404 (1121)
T ss_pred cccchHHHHHHHHHHhhhhHHHHHhccchhccCC---c--hHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHH
Confidence 4678999999999999999999999998853211 0 0001122222222234456678999999999999999999
Q ss_pred HHHHHHHhcC-CCCcHHHHHHHHhhhhhh--hhHHHHHHH----HH---hcCCCccchHHHHHHhhh----ccCCHHH--
Q 004500 131 LLIEQKLLSE-TMPILATVTQGLNKFFVL--FPPLYELVL----EI---ERDDIRGGQLLNLLHKRC----HCGMPEL-- 194 (748)
Q Consensus 131 ~~lE~~~~~~-~~~sL~~l~~~l~~~~~~--l~~L~~lv~----~i---~~~~~~g~~lL~~L~~~~----~~G~~~~-- 194 (748)
+++++-+.++ ..+.|..+...|.+.... +..++.+.. +. +-.......|++-+++.+ ..|+..-
T Consensus 405 aeIckcianndqnflLadVVdaLadmlelrhiidlHklffhGVaetppdeffavgardLlnpickaiiaYddrgeadeak 484 (1121)
T KOG4344|consen 405 AEICKCIANNDQNFLLADVVDALADMLELRHIIDLHKLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAK 484 (1121)
T ss_pred HhHHhhhhcCCceeeHHHHHHHHHHHHhhHHHHHHHHHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCccc
Confidence 9999987654 557788887777765443 444444432 11 112235568899999987 2444322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCCcccCCCC-ccch--------HhhhhhccCCCCccc
Q 004500 195 -QACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSH-SDVS--------EKLARLSTDYTSVTD 264 (748)
Q Consensus 195 -~~~~~~Ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFFI~~~~~~~~~~~~~~-~~~~--------~~l~~~~~~~~~~~~ 264 (748)
..++..|......|+++.++.|+.+|.|.|+..||.|.+..+...++..-. ..+. ++....+ +..+..
T Consensus 485 ntlilFsiefeehfpqLqlldElaedghLddGaaefiiarlknrlvkHrdfqyaphqklataekfeneekmc--diadas 562 (1121)
T KOG4344|consen 485 NTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFIIARLKNRLVKHRDFQYAPHQKLATAEKFENEEKMC--DIADAS 562 (1121)
T ss_pred ceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHHHHHHhccccccchhhhccHHHHHHHHHhhhHHHHh--hhhccc
Confidence 234455667888999999999999999999999999999876544332100 0000 0010000 111112
Q ss_pred cccceeee---cCCCCcccChhHHHHHHhhhhHHHHhhCC--Cccchh-----------------hhhhhhcccc--cc-
Q 004500 265 WHLGFHIF---LDMLPEYIHMRIAESILFAGKAVRVLRNP--SSAFRF-----------------QDQLITRSSQ--KI- 319 (748)
Q Consensus 265 W~~~y~l~---~~~lP~Fl~~~~a~~Il~~GKsl~~Lr~~--~~~~~~-----------------~~~~~~~g~~--~~- 319 (748)
| .+-..- .+-+-+|.. +.-..|.+.||+.+.+.+. ..+-.| ...+.++|.. ..
T Consensus 563 s-graagedhlqefiVeFck-eedaniimagkrkqllgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlc 640 (1121)
T KOG4344|consen 563 S-GRAAGEDHLQEFIVEFCK-EEDANIIMAGKRKQLLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLC 640 (1121)
T ss_pred c-ccccChHHHHHHHHHHHH-HHHHHHHHhhhHHHhhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhcccccccc
Confidence 2 111100 012234665 4556688999999999963 111111 1111122220 00
Q ss_pred --ccccccccccccc-chhh------h------c------ccccCCCcchHHHHHHHHhh--cc--CCC---------cc
Q 004500 320 --QGVTGRFSIQKEP-LLDM------K------L------IGEELLPQSDADKIEAMLQG--LK--EPS---------EF 365 (748)
Q Consensus 320 --~~~~~~~~~~~e~-~~~~------~------~------~~~~~l~~~~~~~~~~~l~~--l~--~~~---------~~ 365 (748)
+..+.-.+..+|. .+.. + + .+..-.| ++..++++.... .. ... .|
T Consensus 641 spntLsEmlqankEiqLmklhdeaeshffalddVhcgadaidfadep-eedkDfedkfacgdvcvdrsqeirncelFaif 719 (1121)
T KOG4344|consen 641 SPNTLSEMLQANKEIQLMKLHDEAESHFFALDDVHCGADAIDFADEP-EEDKDFEDKFACGDVCVDRSQEIRNCELFAIF 719 (1121)
T ss_pred CHHHHHHHHhhccccchhhHHHHHHHhHHHHhhccCcccccchhhCC-CccccHHHhhccccccccccccceehhhHHHH
Confidence 0000000111111 0000 0 0 0000001 111112211110 00 000 12
Q ss_pred chhhHHHHHHHHH--HHHHHHHHHHHHhhhcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCccccccchHHH
Q 004500 366 HKRSFECAVDSIR--AIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQ 443 (748)
Q Consensus 366 ~~~~~~~~I~~~~--~~~s~~L~~~l~~~~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~~L~~~l~ 443 (748)
...-++..|++.+ ...+..|+.-+.+++.+.+.|++.+.||++..||.+..|.-..+..+....++.+ ....+.-|+
T Consensus 720 lqpclephidkQrerLdccgnLManikKdlelsecLQakreffeaegedlmrdfwlaiedaIRakckeqn-VaekmrfLq 798 (1121)
T KOG4344|consen 720 LQPCLEPHIDKQRERLDCCGNLMANIKKDLELSECLQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQN-VAEKMRFLQ 798 (1121)
T ss_pred hhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHh-HHHHHHHHH
Confidence 2345777888884 4568899999999999999999999999999999999999998888765555444 344555666
Q ss_pred HHHh--hhcccccccCCceEEEecCCCcccC------CCc---chh---hhhhcccCCCCCCccCCCCCCCCccccccee
Q 004500 444 LAAI--KTISEEDKYFSRVSLRMPSFGITVK------SPH---VDL---LKAKAYADGTSGAALSSGNSDISLDGWDGIA 509 (748)
Q Consensus 444 ~a~~--~s~~~~d~~~~~l~~~~~~~~~~~~------~~~---~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 509 (748)
+|+. .-.. --++.+++.+++....-..+ |+. +-. |+..-+-- -.=.++-++.+-....+++++.
T Consensus 799 eamglekrYl-fvedsnaLfirfEnvdnakkaLgsvltsklcavllphypqlahylh-vklisqinsnsikvveaLdaie 876 (1121)
T KOG4344|consen 799 EAMGLEKRYL-FVEDSNALFIRFENVDNAKKALGSVLTSKLCAVLLPHYPQLAHYLH-VKLISQINSNSIKVVEALDAIE 876 (1121)
T ss_pred HHhhhhhccc-ccccccceeEEeecccchhhhcchhhhhhhhhhhcccchhhhhHHH-HHHHhhhcccchhhhhhhhhee
Confidence 6653 1111 11335778888753211000 000 000 00000000 0000000112223567899999
Q ss_pred eeee--cCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhhhchhhhccc-------ccccccchhhh
Q 004500 510 LEYS--VDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWAS-V--MHQDHTYFAKHR-------NDRINYSKSQQ 577 (748)
Q Consensus 510 L~y~--v~wPL~lIlt~~~~~~Y~~iF~fLl~lk~~~~~L~~~w~~-~--~~~~~~~~~~~~-------~~~~~~~~s~~ 577 (748)
|+|+ ++||..+|||+.+|+.||.+|+.|+++|+|.|.|..+-+. . |..+. -.+.. ..+. +...+.
T Consensus 877 LdferpmamhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekp--Rakegliheqdtvaqf-capkdl 953 (1121)
T KOG4344|consen 877 LDFERPMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKP--RAKEGLIHEQDTVAQF-CAPKDL 953 (1121)
T ss_pred ecccCCcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--hhhccccccccccccC-CCccch
Confidence 9999 9999999999999999999999999999999999995443 2 11111 01100 0000 111123
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhcCCch--hHHHHHH
Q 004500 578 RRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLG--SVSRILD 655 (748)
Q Consensus 578 ~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VI~~~w~~~~~~l~~~~dld~l~~~H~~fL~~i~~~cfL~~~--~i~~~i~ 655 (748)
.+..++++..+|.+++|||++|+.|+|..|+++.-.+|+.+++.++|+|+++.+|.+||.+|...|+|+++ .+..+|+
T Consensus 954 iglqIhRleilRfkLiffiNnLHahIMeailhStgleFehqieEaKdldeLiiiHdehLatihdhClLrdefkafkeAid 1033 (1121)
T KOG4344|consen 954 IGLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAID 1033 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999974 5788999
Q ss_pred HHHHHHHHHHHHHHh-------hcCCCC--------hhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcHHHHHHHHhhc
Q 004500 656 GIMKLCIQFCWAIEN-------QESSEN--------TPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLRRFLLRLN 720 (748)
Q Consensus 656 ~il~l~~~F~~~~~~-------~~~~~~--------~~~i~~~~~~F~~~~~~L~~~L~~~~~~~~~~~~~l~~Ll~RLd 720 (748)
+|+.++..|..-|+. +++.-. ...-+.-+..|+.|..++++.+++ ...++..+++.-|.+-|-
T Consensus 1034 kifhLalmfadeWqtcascmhagdaKOGdesIeddeiDdsetqrrsfencalflVaeiek--avcRchfmhadiLalllh 1111 (1121)
T KOG4344|consen 1034 KIFHLALMFADEWQTCASCMHAGDALCLDESIEDDEIDDSETQRRSFENCALFLVAEIEK--AVCRCHFMHADILALLLH 1111 (1121)
T ss_pred HHHHHHHHHhcccchhhhhhccccchhhhhhhhcccccchHHHHhHHHHHHHHHHHHHHH--HHHhcchhHHHHHHHHHh
Confidence 999999999988873 222111 112233456799999999999999 888899998877766554
Q ss_pred c
Q 004500 721 F 721 (748)
Q Consensus 721 f 721 (748)
-
T Consensus 1112 a 1112 (1121)
T KOG4344|consen 1112 A 1112 (1121)
T ss_pred c
Confidence 3
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=61.37 E-value=4.4 Score=43.89 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=45.8
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCcCCch-HHHHHHHHHHHHHHHHHHHHHHH
Q 004500 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPS-ERDLLEKIITLGFYYREIDRFAS 78 (748)
Q Consensus 1 ml~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s-~~~ll~~i~~lg~~y~~l~~fv~ 78 (748)
|++|.+|+|.|++|.+|... ++.|...|.+..++.+ ++.++..++..|.-+-.+++-..
T Consensus 185 ~~~e~IymL~Gy~~~~f~~v-------------------e~~l~~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva~ 244 (653)
T PF14609_consen 185 WKYEIIYMLMGYQGHIFTCV-------------------EEILRHAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVAN 244 (653)
T ss_pred hHHHHHHHHhcCcchhhhhh-------------------HhhhcccccccchHHHHHHHHHHHhhccccchHHHHHHhC
Confidence 78999999999999999553 4566666666555554 68889999999999888875433
No 7
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=39.83 E-value=1.1e+02 Score=36.89 Aligned_cols=123 Identities=13% Similarity=-0.032 Sum_probs=91.4
Q ss_pred CcccccceeeeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhchhhhcccccccccchhhhhh
Q 004500 501 SLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASV-MHQDHTYFAKHRNDRINYSKSQQRR 579 (748)
Q Consensus 501 ~~~~~~~l~L~y~v~wPL~lIlt~~~~~~Y~~iF~fLl~lk~~~~~L~~~w~~~-~~~~~~~~~~~~~~~~~~~~s~~~~ 579 (748)
...+||.-...|+++.++.-.++.-+- ..+|.++|++.+-.|.++++|... ++..+. ..+ .+
T Consensus 588 ~~~~gd~gwdvfsl~y~v~~p~s~v~t---~~~~~~ylrif~flwrlkR~e~~L~~~i~k~-----~m~--~~------- 650 (879)
T KOG2000|consen 588 KLSHGDDGWDVFSLDYAVDGPLSLVLT---RELMLKYLRVFNFLWKLKRVEFLLELHIWKM-----LMK--DC------- 650 (879)
T ss_pred hccCCcccceeeeecceecccHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhh--hh-------
Confidence 467888899999999999999887443 999999999999999999999986 332221 000 00
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhcCC
Q 004500 580 QTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLD 646 (748)
Q Consensus 580 ~~~~~~~~lr~~m~~fv~~L~~Y~~~~VI~~~w~~~~~~l~~~~dld~l~~~H~~fL~~i~~~cfL~ 646 (748)
+..-..|..|.|++.....++...+.|-+|. ..+++--..++ +++.|-.++...+..-...
T Consensus 651 ---~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f--~sq~q~y~~f~-vie~~wk~l~~~~~~a~~~ 711 (879)
T KOG2000|consen 651 ---NVAKRDRLLKIPEISCALHRCHILTNEMNHF--ISQMQYYILFE-VIECSWKELSKKMEPARNP 711 (879)
T ss_pred ---cccccchhcchHHHHhhhhhhhhHHHHHHHH--HHhhhhccccc-hhhcChHHHHHHHhhccCc
Confidence 1034567889999999999988777766554 44555445555 9999999999988777663
No 8
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.47 E-value=5.2 Score=44.72 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHhhhhhhhhHHHHHHHHH----hcCCCccchHHHHHHhh
Q 004500 112 RRAIANGIVEILSVYRSAVLLIEQKLLSETMP-ILATVTQGLNKFFVLFPPLYELVLEI----ERDDIRGGQLLNLLHKR 186 (748)
Q Consensus 112 ~~A~~~~l~~~L~~y~~~i~~lE~~~~~~~~~-sL~~l~~~l~~~~~~l~~L~~lv~~i----~~~~~~g~~lL~~L~~~ 186 (748)
-.-|+-+++..|+...+.|...+.....++.. ++.-+....+..+..|+.|.+++... .+.......+++.++++
T Consensus 453 deffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaefiiarlknrlvkH 532 (1121)
T KOG4344|consen 453 DEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFIIARLKNRLVKH 532 (1121)
T ss_pred chhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHHHHHHhcccccc
Confidence 35688899999999999998888776655422 22111222344555566666665532 00112234566666666
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCC
Q 004500 187 CHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDR 237 (748)
Q Consensus 187 ~~~G~~~~~~~~~~Ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFFI~~~~~~ 237 (748)
..--....+.+.........+-|+..++.|.......|...||+|......
T Consensus 533 rdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFckee 583 (1121)
T KOG4344|consen 533 RDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCKEE 583 (1121)
T ss_pred chhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHHHH
Confidence 533323446677777788899999999999999999999999999876543
No 9
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=25.68 E-value=2.2e+02 Score=23.18 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHH-HHhccCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 004500 612 WNILQA-HIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQF 664 (748)
Q Consensus 612 w~~~~~-~l~~~~dld~l~~~H~~fL~~i~~~cfL~~~~i~~~i~~il~l~~~F 664 (748)
-++|-+ .+++.-+.++|++.|.+++..+...+ ...+...++=++++..-|
T Consensus 23 ~~~~~r~~i~~~I~PEeIv~iH~~~v~~l~~~~---~~~v~~sld~LlEvm~~y 73 (77)
T PF08673_consen 23 AQEFGRELIEKDISPEEIVEIHKSAVQELSPSL---PEDVLDSLDFLLEVMIGY 73 (77)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHH-TTS----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHc
Confidence 344433 34556799999999999999988776 455666666666655544
No 10
>KOG3666 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.36 E-value=6.9e+02 Score=29.22 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH----------HHHHHHHHHhh---cC------CCChhHHHHH
Q 004500 623 HDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKL----------CIQFCWAIENQ---ES------SENTPELEHI 683 (748)
Q Consensus 623 ~dld~l~~~H~~fL~~i~~~cfL~~~~i~~~i~~il~l----------~~~F~~~~~~~---~~------~~~~~~i~~~ 683 (748)
.-+|++.+.|+--.+-..++|+-+..+..+.+.+.+++ ..+|+-.|.-. .. ....+.+..+
T Consensus 488 qal~~Vqe~h~L~sNl~vKq~L~~tr~~L~qm~~~inLke~~~i~~q~~~d~sYaW~Li~~ftP~mQe~i~v~ps~v~~i 567 (1141)
T KOG3666|consen 488 QALEEVQEFHQLESNLQVKQFLADTRKFLHQMIRTINLKEEVLITMQIVGDLSYAWQLIDSFTPIMQESIRVNPSMVTKL 567 (1141)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhCcchhheeeeeeehhHHHHHHHHHHhhhHHHHhhccCchHHHHH
Confidence 34666777776666666777776655554444444443 22343333211 10 0234578889
Q ss_pred HHHHHHHHHHHHHHhhc
Q 004500 684 TEEFNKKSNSLYTILRS 700 (748)
Q Consensus 684 ~~~F~~~~~~L~~~L~~ 700 (748)
+..|-+....+.-.+-.
T Consensus 568 Ra~FlKLas~l~~pllr 584 (1141)
T KOG3666|consen 568 RATFLKLASALDLPLLR 584 (1141)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 99999988887655554
No 11
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=22.50 E-value=9e+02 Score=25.28 Aligned_cols=108 Identities=7% Similarity=0.110 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHH---HHHHHhhcCCchhHHHHHH
Q 004500 585 MWRVREHMAFLIRNLQFYIQ--VDVIETQWNILQAHIQ----ESHDFTELVGFHQEYL---SALISQSFLDLGSVSRILD 655 (748)
Q Consensus 585 ~~~lr~~m~~fv~~L~~Y~~--~~VI~~~w~~~~~~l~----~~~dld~l~~~H~~fL---~~i~~~cfL~~~~i~~~i~ 655 (748)
...+-..+.-|..++..|.. .+|.......|.+.+. +.++++...+..+.++ +......|.+ ++..++..
T Consensus 164 ~~~l~~a~~~~~~a~~ey~~~l~~~~~~a~~~~~~~l~~~~~~g~~~~s~re~~d~Wi~~ae~~~~~~~~S-~ef~~~~g 242 (293)
T PF09712_consen 164 LQALFDAWMEYQRASQEYQAQLSEAWMKAFERMMEKLQERAEEGEQIKSWREFYDIWIDAAEEAYEELFRS-EEFAQAYG 242 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 34455556777777777653 4566667777777773 3445555555555554 4455555555 46666666
Q ss_pred HHHHHHHHHHHHHHhh-------cCCCChhHHHHHHHHHHHHHHH
Q 004500 656 GIMKLCIQFCWAIENQ-------ESSENTPELEHITEEFNKKSNS 693 (748)
Q Consensus 656 ~il~l~~~F~~~~~~~-------~~~~~~~~i~~~~~~F~~~~~~ 693 (748)
++++-...+...++.. -+-|..++|+.++++....-+.
T Consensus 243 ~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre 287 (293)
T PF09712_consen 243 QLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRRE 287 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 6666666665554433 2347778888888776644333
Done!