Query 004500
Match_columns 748
No_of_seqs 198 out of 864
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 18:22:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004500.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1807-1810//hhsearch_pdb/004500hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 1.0 1 1 829.7 61.8 640 1-729 1-658 (677)
2 3t98_B Nucleoporin NUP58/NUP45 1.0 1 1 13.7 7.6 58 106-163 4-64 (93)
3 1mjt_A Nitric-oxide synthase h 1.0 1 1 11.8 -1.8 29 377-405 268-297 (347)
4 2flq_A Nitric oxide synthase; 1.0 1 1 11.8 -1.3 31 376-406 284-315 (375)
5 3e7m_A Nitric oxide synthase, 1.0 1 1 11.7 -2.0 31 376-406 342-373 (433)
6 1m7v_A Nitric oxide synthase; 1.0 1 1 11.7 -1.4 30 376-405 279-309 (363)
7 3n5w_A Nitric oxide synthase; 1.0 1 1 11.6 -2.0 32 376-407 332-364 (422)
8 2ort_A Nitric oxide synthase, 1.0 1 1 11.6 -0.2 13 392-404 311-323 (389)
9 1d0c_A Bovine endothelial nitr 1.0 1 1 11.6 -2.0 30 376-405 361-391 (444)
10 4ae4_A Ubiquitin-associated pr 1.0 1 1 10.7 2.0 29 52-80 4-32 (118)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=829.67 Aligned_cols=640 Identities=33% Similarity=0.625 Sum_probs=529.1
Q ss_pred CHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 93888999649999914115433467888899999987787402179998679009999999999979999999999751
Q 004500 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA 80 (748)
Q Consensus 1 mi~elL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~l~~s~~~ll~~i~~lg~~~~~l~~fi~~~ 80 (748)
||||||+||+|++|.+|.+.+ ..+|+|++++++++||+++++++++++|++|++|++|++..
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~------------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~ 62 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK------------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQY 62 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET------------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCCEEECC------------------CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 908799997599998167547------------------87623088889889779999999999999999999999960
Q ss_pred HCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 01210012479941566642125899981899999999999999999999999999831998808999997766541005
Q 004500 81 RNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFP 160 (748)
Q Consensus 81 ~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~~~~~sL~~l~~~l~~~~~~l~ 160 (748)
. +++.+.+.+|. +.+.....|.|.+|||.+|+++|++|+..|+.+|.+++.++.+||+.+...++++..+++
T Consensus 63 ~--~~~~~~~~~~~------~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~ 134 (677)
T 3rip_A 63 T--GHVQQQDHHPS------QQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFP 134 (677)
T ss_dssp S--CC-------------------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHH
T ss_pred C--CCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3--44457543544------334667787999999999999999999999999999964999859999999888999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCCC
Q ss_conf 89999999730787600488999963015987999999999999989999999999840311588885058850588866
Q 004500 161 PLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTE 240 (748)
Q Consensus 161 ~L~~iv~~i~~~~~~g~~LL~~L~~~~~~G~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFFI~~~~~~~~~ 240 (748)
.|++++.+++....+||++|+.||+++.+|+|.+++++.+|+..|++||++||..||.+|+|.|||+||||++++.....
T Consensus 135 ~L~~l~~~~~~~~~~G~~lL~~L~~~~~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~ 214 (677)
T 3rip_A 135 SVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNV 214 (677)
T ss_dssp HHHHHHHHHHHHTCCTHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC------
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHEEEECCCCCCC
T ss_conf 99999999861898789999999998754998999999999999999999999999968741787620036735443444
Q ss_pred CCCCCCCCHHHHH----------HH-----CCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5788764037643----------10-----14788744566640230478875447568989986445889842789642
Q 004500 241 HCSSHSDVSEKLA----------RL-----STDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAF 305 (748)
Q Consensus 241 ~~~~~~~~~~~l~----------~~-----~~~~~~~~~W~~~f~i~~~~lP~fl~~~~a~~Il~~GKsi~~L~~~~~~~ 305 (748)
...+.+.++++. ++ ..++....+|.++|.++.+++|+|+++++|+|||.|||++++||.++...
T Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~ 293 (677)
T 3rip_A 215 -SAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNL 293 (677)
T ss_dssp ---------------------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSC
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf -4453211111233456664321033320000002332210463455765767468899999998517899887068888
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 01355431011222364565445564100100001467993218899999950259886633449888999999999999
Q 004500 306 RFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHL 385 (748)
Q Consensus 306 ~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~L 385 (748)
..++ ..++ ....++.+.+.+++..++++...|+.+|+++|..+|+.|
T Consensus 294 ------~~~~--------------------------~~~~-~~~~~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~L 340 (677)
T 3rip_A 294 ------TRKG--------------------------SILK-NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHL 340 (677)
T ss_dssp ------C-----------------------------CTTC-SHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCC--------------------------CCCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ------7533--------------------------4455-368999999998731456777879999999999999999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 99998331399999986454303587248999999998614999887410011149999985412235556783279822
Q 004500 386 WQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMP 465 (748)
Q Consensus 386 ~~~l~~~~~L~~hL~~l~~~~Ll~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~~s~~~~d~~~~~l~~~~~ 465 (748)
+++++++++|.+||+++|+||||++|||+..|++.++++|.+|+.+.. .++|+.+|+.|++.+..+++++.+++.+.+.
T Consensus 341 l~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~-~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~ 419 (677)
T 3rip_A 341 WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVT-EHDVNVAFQQSAHKVLLDDDNLLPLLHLTIE 419 (677)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTH-HHHHHHHHHHHHHHTTCCCTTTGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHCCCCCHHHHHCCEEEEE
T ss_conf 999850657999999999978047772999999999998628975257-9999999999999746796556741237764
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78755678741022221024888877667899888766544066653328864444498899999999999999899999
Q 004500 466 SFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQM 545 (748)
Q Consensus 466 ~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~~~~~~~~~~~l~L~y~v~wPL~lilt~~~l~~Y~~iF~fLl~lk~~~~ 545 (748)
..+.... +.++.. .+.+........+..+|++|.|+|+|||||++|||+++|.+|++||+|||++||+++
T Consensus 420 ~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~ 489 (677)
T 3rip_A 420 YHGKEHK----DATQAR------EGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQA 489 (677)
T ss_dssp CCC---------------------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC----CCCCCC------CCCCCCCCCCCCCCCCHHEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3664444----556665------443322344567755011278987679708873799999999999999999999999
Q ss_pred HHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 99999999852100101002466345411333210156189999999999999999999998899999999987215899
Q 004500 546 ELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDF 625 (748)
Q Consensus 546 ~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~Yl~~dVI~~~w~~l~~~l~~~~dl 625 (748)
.|+++|+..+..++. .+ .. ...++ |.+|++|+|||+++++|++++||+++|.+|++++++++|+
T Consensus 490 ~L~~~w~~~~~~~~~------~~----~~-----~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~ 553 (677)
T 3rip_A 490 ELQHCWALQMQRKHL------KS----NQ-----TDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDF 553 (677)
T ss_dssp HHHHHHHHHTSGGGC------CS----SH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHCCCC------CC----CC-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999999999852356------88----73-----56999-9999999999999999998987999999999734558999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999641892349999999999999999999820599---9905999999999999999999961033
Q 004500 626 TELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESS---ENTPELEHITEEFNKKSNSLYTILRSTR 702 (748)
Q Consensus 626 d~l~~~H~~fL~~i~~~~fL~~~~i~~~i~~il~l~~~F~~~~~~~~~~---~~~~~i~~~~~~F~~~~~~L~~~L~~~~ 702 (748)
|+++.+|++||++|+.+|||+.+++.+++.+|+++|++||..+++..+. ...+++++++++|++++.+|+++|++
T Consensus 554 d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~L~~~l~~-- 631 (677)
T 3rip_A 554 ESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKILSS-- 631 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999999999999999987518669999999999999999999986303335235899999999999999999999998--
Q ss_pred CCCCCCCHHHHHHHHHHCCCHHHHCCC
Q ss_conf 368889177999998633521200165
Q 004500 703 LAGSQRAPFLRRFLLRLNFNSFFEMTA 729 (748)
Q Consensus 703 ~~~~~~~~~l~~Ll~RLdfN~~y~~~~ 729 (748)
+++++..|++.+|++|||||+||+++.
T Consensus 632 l~~~~~~~~l~~Ll~rLd~N~~y~~~~ 658 (677)
T 3rip_A 632 VRNHQINSDLAQLLLRLDYNKYYTQAG 658 (677)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHC----
T ss_pred HHCCCCCHHHHHHHHHHCCHHHHCCCC
T ss_conf 835688538999999938523113799
No 2
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=1.00 E-value=1 Score=13.75 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99818999999999999999999999999998319---98808999997766541005899
Q 004500 106 ERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSE---TMPILATVTQGLNKFFVLFPPLY 163 (748)
Q Consensus 106 ~~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~~---~~~sL~~l~~~l~~~~~~l~~L~ 163 (748)
..+..|.+-++.-.++.|..|+..|-.+|..+... ...|...|...|+.....+-.|+
T Consensus 4 ~~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLA 64 (93)
T 3t98_B 4 MAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALA 64 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9638999999999999999999999999999973457787999999999999999999999
No 3
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} SCOP: d.174.1.1
Probab=1.00 E-value=1 Score=11.77 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHH-HHHCHHHHHHHHHHH
Q ss_conf 99999999999998-331399999986454
Q 004500 377 IRAIAASHLWQLVV-VRANLNGHLKALKDY 405 (748)
Q Consensus 377 ~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~ 405 (748)
..-.++..++..+. ....+.+|..+-++|
T Consensus 268 AlvElN~AVlhSF~~~gVtivDHHtas~~F 297 (347)
T 1mjt_A 268 ALVELNYAVYHSFKKEGVSIVDHLTAAKQF 297 (347)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCHHHH
T ss_conf 999988999978865796161441025999
No 4
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=11.76 Aligned_cols=31 Identities=6% Similarity=-0.027 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHH
Q ss_conf 999999999999998-3313999999864543
Q 004500 376 SIRAIAASHLWQLVV-VRANLNGHLKALKDYF 406 (748)
Q Consensus 376 ~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~~ 406 (748)
...-.++..++..+. ....+.+|..+-++|.
T Consensus 284 rAlvElN~AVLhSF~~~gVtivDHHtas~~F~ 315 (375)
T 2flq_A 284 KALVELNIAVLYSYKKAGVSIVDHHTAARQFQ 315 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCHHHHH
T ss_conf 89999889999778647961614420259999
No 5
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=1.00 E-value=1 Score=11.74 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
Q ss_conf 99999999999999-83313999999864543
Q 004500 376 SIRAIAASHLWQLV-VVRANLNGHLKALKDYF 406 (748)
Q Consensus 376 ~~~~~~s~~L~~~l-~~~~~L~~hL~~l~~~~ 406 (748)
...-.+|-.++..+ .....+.+|..+-++|.
T Consensus 342 rAlvElN~AVLhSF~~~gVtIvDHHtas~~F~ 373 (433)
T 3e7m_A 342 RAVTEINVAVLHSFQKQNVTIMDHHTASESFM 373 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCHHHHHHH
T ss_conf 89998889998778767924713403079999
No 6
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=1.00 E-value=1 Score=11.66 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHH-HHHCHHHHHHHHHHH
Q ss_conf 999999999999998-331399999986454
Q 004500 376 SIRAIAASHLWQLVV-VRANLNGHLKALKDY 405 (748)
Q Consensus 376 ~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~ 405 (748)
...-.++..++..+. ....+.+|..+-++|
T Consensus 279 rAlvElN~AVlhSF~~~gVtivDHHtas~~F 309 (363)
T 1m7v_A 279 QALVELNKAVLYSYKKQGVSIVDHHTAASQF 309 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCHHHH
T ss_conf 8999988999978875796161442025999
No 7
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=1.00 E-value=1 Score=11.64 Aligned_cols=32 Identities=6% Similarity=-0.004 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHC
Q ss_conf 99999999999999-833139999998645430
Q 004500 376 SIRAIAASHLWQLV-VVRANLNGHLKALKDYFL 407 (748)
Q Consensus 376 ~~~~~~s~~L~~~l-~~~~~L~~hL~~l~~~~L 407 (748)
...-.+|-.++..+ .....+.+|..+-++|.-
T Consensus 332 rAlvElN~AVlhSF~~~gVtIvDHHtas~~F~~ 364 (422)
T 3n5w_A 332 QALVEINIAVLYSFQSDKVTIVDHHSATESFIK 364 (422)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHH
T ss_conf 899988899987787679347134030799999
No 8
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme, dimerization, inhibitor, NOS, oxidoreductase; HET: HEM 342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A* 2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A* 1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A* 1dwx_A* 1n2n_A* 1qw4_A* ...
Probab=1.00 E-value=1 Score=11.61 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=5.1
Q ss_pred HHCHHHHHHHHHH
Q ss_conf 3139999998645
Q 004500 392 RANLNGHLKALKD 404 (748)
Q Consensus 392 ~~~L~~hL~~l~~ 404 (748)
...+.+|..+-++
T Consensus 311 gVtivDHHtas~~ 323 (389)
T 2ort_A 311 NVTIMDHHTASES 323 (389)
T ss_dssp TCCBCCHHHHHHH
T ss_pred CCEEECCCCCHHH
T ss_conf 9616144202699
No 9
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=1.00 E-value=1 Score=11.58 Aligned_cols=30 Identities=7% Similarity=0.044 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHH-HHHCHHHHHHHHHHH
Q ss_conf 999999999999998-331399999986454
Q 004500 376 SIRAIAASHLWQLVV-VRANLNGHLKALKDY 405 (748)
Q Consensus 376 ~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~ 405 (748)
...-.++..++..+. ....+.+|..+-++|
T Consensus 361 rAlVElN~AVLhSF~~~gVtIvDHHtas~qF 391 (444)
T 1d0c_A 361 KAAVEINLAVLHSFQLAKVTIVDHHAATVSF 391 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCHHHH
T ss_conf 7999988999977865796061442026999
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=1.00 E-value=1 Score=10.72 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79009999999999979999999999751
Q 004500 52 IEPSERDLLEKIITLGFYYREIDRFASKA 80 (748)
Q Consensus 52 l~~s~~~ll~~i~~lg~~~~~l~~fi~~~ 80 (748)
++|++++++..+...|+-..++.+-+..+
T Consensus 4 l~~~e~~~v~~l~~MGFp~~~~~kAl~~~ 32 (118)
T 4ae4_A 4 MSPSERQCVETVVNMGYSYECVLRAMKAA 32 (118)
T ss_dssp SCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98899999999998399899999999998
Done!