Query 004500
Match_columns 748
No_of_seqs 198 out of 864
Neff 8.9
Searched_HMMs 13730
Date Tue Mar 26 18:27:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004500.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1807-1810//hhsearch_scop/004500hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i10a2 a.121.1.1 (A:79-194) P 10.0 29 0.0021 10.0 4.4 50 173-223 23-72 (116)
2 d2fx0a2 a.121.1.1 (A:77-198) H 9.0 33 0.0024 9.7 2.4 43 175-222 20-62 (122)
3 d1m7va_ d.174.1.1 (A:) Nitric 5.0 38 0.0028 9.3 -1.4 31 375-405 278-309 (363)
4 d1pb6a2 a.121.1.1 (A:86-211) H 4.5 81 0.0059 7.3 4.5 21 202-222 48-68 (126)
5 d1q2oa_ d.174.1.1 (A:) Nitric 4.1 40 0.0029 9.2 -1.8 32 375-406 332-364 (416)
6 d1mjta_ d.174.1.1 (A:) Nitric 3.9 42 0.0031 9.0 -1.8 31 375-405 265-296 (346)
7 d1om4a_ d.174.1.1 (A:) Nitric 3.9 43 0.0031 9.0 -1.8 32 375-406 329-361 (418)
8 d3e7ma1 d.174.1.1 (A:77-497) N 3.5 44 0.0032 8.9 -2.0 32 375-406 330-362 (421)
9 d2hyja2 a.121.1.1 (A:83-200) P 3.5 1.1E+02 0.008 6.5 8.1 47 175-222 25-71 (118)
10 d1ldja2 a.118.17.1 (A:17-410) 3.1 1.3E+02 0.0091 6.2 8.1 38 625-663 351-388 (394)
No 1
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=10.00 E-value=29 Score=10.03 Aligned_cols=50 Identities=10% Similarity=-0.051 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 876004889999630159879999999999999899999999998403115
Q 004500 173 DIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQ 223 (748)
Q Consensus 173 ~~~g~~LL~~L~~~~~~G~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~L~ 223 (748)
..+||-+.+...+.. ..++.++..+...+......+...+......|+|.
T Consensus 23 ~p~GCl~~~~~~E~~-~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~ 72 (116)
T d2i10a2 23 QPFGCMTVQAGLASG-EPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLP 72 (116)
T ss_dssp ---CCCCSSCBTTTB-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999779998575305-66099999999999999999999999998768998
No 2
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=9.04 E-value=33 Score=9.69 Aligned_cols=43 Identities=12% Similarity=-0.010 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 600488999963015987999999999999989999999999840311
Q 004500 175 RGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGIL 222 (748)
Q Consensus 175 ~g~~LL~~L~~~~~~G~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~L 222 (748)
+--+|.+.+|..+....+.+.. +....-|.+++|..|+..|+=
T Consensus 20 ~~pElg~lay~EIi~~SsRLe~-----IK~~~~~~~eqLr~iL~eg~e 62 (122)
T d2fx0a2 20 ENPEIGTLAYEEIIKESARLEK-----IKPYFIGSFEQLKEILQEGEK 62 (122)
T ss_dssp HCTTTHHHHHHHTTTCCTTHHH-----HGGGTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 3815999999999974715765-----357773259999999998786
No 3
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=5.04 E-value=38 Score=9.31 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHH
Q ss_conf 9999999999999998-331399999986454
Q 004500 375 DSIRAIAASHLWQLVV-VRANLNGHLKALKDY 405 (748)
Q Consensus 375 ~~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~ 405 (748)
+...-.+|-.++..+. ....+.+|..+-++|
T Consensus 278 DrAlvElN~AVLhSF~~~gVtivDHHtas~~F 309 (363)
T d1m7va_ 278 DQALVELNKAVLYSYKKQGVSIVDHHTAASQF 309 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECHHHHHHHH
T ss_conf 88999999999999998796470527889999
No 4
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=4.47 E-value=81 Score=7.31 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHCCEE
Q ss_conf 999989999999999840311
Q 004500 202 LWHGHQVMYNQLASWMVYGIL 222 (748)
Q Consensus 202 l~~~~~p~~~~l~~Wi~~G~L 222 (748)
+..........|..|+..|.+
T Consensus 48 ~~~~~~~~~~il~~g~~~G~~ 68 (126)
T d1pb6a2 48 LKALIDEKSALIAGWVKSGKL 68 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999977986
No 5
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.08 E-value=40 Score=9.15 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHH
Q ss_conf 9999999999999998-3313999999864543
Q 004500 375 DSIRAIAASHLWQLVV-VRANLNGHLKALKDYF 406 (748)
Q Consensus 375 ~~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~~ 406 (748)
+...-.+|-.++..+. ....+.+|..+-++|.
T Consensus 332 DrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~ 364 (416)
T d1q2oa_ 332 DKAAVEINLAVLHSFQLAKVTIVDHHAATVSFM 364 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHH
T ss_conf 789999999999899877964704068899999
No 6
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Staphylococcus aureus [TaxId: 1280]}
Probab=3.92 E-value=42 Score=9.02 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHH
Q ss_conf 9999999999999998-331399999986454
Q 004500 375 DSIRAIAASHLWQLVV-VRANLNGHLKALKDY 405 (748)
Q Consensus 375 ~~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~ 405 (748)
+...-.+|..++..+. ....+.+|..+-++|
T Consensus 265 DrAlvElN~AVLhSF~~~gVtivDHHtas~~F 296 (346)
T d1mjta_ 265 DRALVELNYAVYHSFKKEGVSIVDHLTAAKQF 296 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECHHHHHHHH
T ss_conf 89999999999999998796582527889999
No 7
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.87 E-value=43 Score=8.99 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHH
Q ss_conf 9999999999999998-3313999999864543
Q 004500 375 DSIRAIAASHLWQLVV-VRANLNGHLKALKDYF 406 (748)
Q Consensus 375 ~~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~~ 406 (748)
+...-.+|-.++..+. ....+.+|..+-++|.
T Consensus 329 DrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~ 361 (418)
T d1om4a_ 329 DQALVEINIAVLYSFQSDKVTIVDHHSATESFI 361 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHH
T ss_conf 889999999999899887964805278999999
No 8
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.54 E-value=44 Score=8.92 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHH
Q ss_conf 9999999999999998-3313999999864543
Q 004500 375 DSIRAIAASHLWQLVV-VRANLNGHLKALKDYF 406 (748)
Q Consensus 375 ~~~~~~~s~~L~~~l~-~~~~L~~hL~~l~~~~ 406 (748)
+...-.+|-.++..+. ....+.+|..+-++|.
T Consensus 330 DrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~ 362 (421)
T d3e7ma1 330 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFM 362 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHH
T ss_conf 789999999999899887964805278899999
No 9
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.50 E-value=1.1e+02 Score=6.52 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 600488999963015987999999999999989999999999840311
Q 004500 175 RGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGIL 222 (748)
Q Consensus 175 ~g~~LL~~L~~~~~~G~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~L 222 (748)
.||.+.+..-+ ....++.+++.+...+.....-+.+.|...+..|++
T Consensus 25 ~GC~~~~~~~E-~~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i 71 (118)
T d2hyja2 25 GGCLLTAALSE-YDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGEL 71 (118)
T ss_dssp TSCHHHHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99856768977-177998999999999999999999999999986987
No 10
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.13 E-value=1.3e+02 Score=6.16 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999996418923499999999999999
Q 004500 625 FTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQ 663 (748)
Q Consensus 625 ld~l~~~H~~fL~~i~~~~fL~~~~i~~~i~~il~l~~~ 663 (748)
+++++..|+.| +.+...||-.++.+..++.+.+.-+++
T Consensus 351 V~~ll~l~~~~-~~ii~~~F~~d~~f~~~l~~af~~fiN 388 (394)
T d1ldja2 351 VQTVLDVHKKY-NALVMSAFNNDAGFVAALDKACGRFIN 388 (394)
T ss_dssp HHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999999-999999859988999999999999837
Done!