Query 004501
Match_columns 748
No_of_seqs 413 out of 3211
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 18:41:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004501.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1807-1810//hhsearch_pdb/004501hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asz_A BDNF/NT-3 growth factor 1.0 1 1 349.5 13.0 206 528-736 13-235 (299)
2 4aoj_A High affinity nerve gro 1.0 1 1 349.2 16.5 206 528-736 41-265 (329)
3 3m7h_A Putidacin L1; monocot m 1.0 1 1 348.7 15.0 236 19-284 10-255 (276)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 344.9 16.0 205 529-736 27-252 (308)
5 4fie_A Serine/threonine-protei 1.0 1 1 343.0 17.4 199 528-735 151-350 (423)
6 4fih_A Serine/threonine-protei 1.0 1 1 341.8 15.9 199 528-735 74-273 (346)
7 4b9d_A Serine/threonine-protei 1.0 1 1 339.2 18.1 202 528-735 24-228 (350)
8 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 337.5 16.2 202 528-735 32-237 (311)
9 4ase_A Vascular endothelial gr 1.0 1 1 334.5 16.1 216 518-736 54-292 (353)
10 3omv_A RAF proto-oncogene seri 1.0 1 1 334.3 18.5 203 526-736 34-241 (307)
No 1
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=349.47 Aligned_cols=206 Identities=31% Similarity=0.522 Sum_probs=182.6
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEE
Q ss_conf 69764461131385779997814------785026898056880049999999999987108985103458981895649
Q 004501 528 DNFSTSNKLGQGGFGPVYKGKLS------NGQEIAVKRLSTTSGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENML 601 (748)
Q Consensus 528 ~~f~~~~~LG~G~fG~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~l 601 (748)
++|.+.++||+|+||.||+|++. ++..||||+++.......++|.+|++++++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 997169987668873124----------4567999999999999999999999689997064698899799879996699
Q 004501 602 IYEFMPNKSLDYFIFDES----------RKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMNPRI 671 (748)
Q Consensus 602 v~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ki 671 (748)
|||||++|+|.+++.... ....+++.+++.++.||+.||.|||+.+ |+||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 71278611378520000135777777458111158988971328999999999992-999998889
Q 004501 672 SDFGTARVFGGEEILAITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIIT-GKKNTRIFN 736 (748)
Q Consensus 672 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~ellt-G~~p~~~~~ 736 (748)
+|||+|+...............||+.|||||++.+..++.++|||||||++|||+| |+.||....
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~ 235 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS 235 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 873001006788741664751347010388987079997036677889999999808999999989
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=349.15 Aligned_cols=206 Identities=29% Similarity=0.503 Sum_probs=183.0
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEE
Q ss_conf 69764461131385779997814------785026898056880049999999999987108985103458981895649
Q 004501 528 DNFSTSNKLGQGGFGPVYKGKLS------NGQEIAVKRLSTTSGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENML 601 (748)
Q Consensus 528 ~~f~~~~~LG~G~fG~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~l 601 (748)
++|.+.++||+|+||.||+|+++ +++.||||+++..+....++|.+|++++.+++|||||+++|+|.++...++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 9971699876688731244------------5679999999999999999999996899970646988997998799966
Q 004501 602 IYEFMPNKSLDYFIFDESR------------KQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMNP 669 (748)
Q Consensus 602 v~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ 669 (748)
|||||++|+|.+++..... ...++|.+++.++.||++||.|||+.+ |+||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 9971278611378520000135777777458111158988971328999999999992-999998889
Q 004501 670 RISDFGTARVFGGEEILAITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIIT-GKKNTRIFN 736 (748)
Q Consensus 670 ki~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~ellt-G~~p~~~~~ 736 (748)
||+|||+++.+.............||+.|||||++.+..++.++|||||||++|||++ |+.||....
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~ 265 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS 265 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989
No 3
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=1.00 E-value=1 Score=348.68 Aligned_cols=236 Identities=17% Similarity=0.215 Sum_probs=181.4
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCC----CCCEEEEEC
Q ss_conf 3233355578951479997970899478765568999860588861007888089941599998789----982699115
Q 004501 19 ISTSIDTISLSQPIKDGDVIVSSRKIYALGFFSPGNSVKRYVGIWYNQISQLTLLWVANRNNPINDT----SGVLSVNIQ 94 (748)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~l~s~~g~f~~gf~~~~~~~~~ylgiw~~~~~~~t~vW~Anr~~p~~~~----~~~l~~~~~ 94 (748)
++++.|+|++|++|++|++|+|++|.|+||||+++ ++|| |+ |++ +||+|||++|+.++ +++|+|+.|
T Consensus 10 ~~~~~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~---~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~ 80 (276)
T 3m7h_A 10 NGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDG---NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKKAPLAFY 80 (276)
T ss_dssp CCTTSSEECTTEEBCTTCEEECTTSSEEEEECTTS---CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTTCCSEEE
T ss_pred CCCCCCEECCCCEECCCCEEECCCCCEEEEEECCC---CEEE---EC--CCC-EEEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 34447874699876699989809995899997899---7699---87--997-299898887767755565328999579
Q ss_pred CCEEEEECCCCCCEEEEECCCCCC----CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 846999439984128810102456----8760899901887799956888516430467866537887212124789621
Q 004501 95 GNLVLHERNQSTVPVWQANISEAS----AGNTVAQLLDTGNLVLVRNDTGETLWQSFDHPTDTVLPNMRFGWDKRTGLNR 170 (748)
Q Consensus 95 G~L~l~~~~~~~~~~Wst~~~~~~----~~~~~a~lldsGNlVl~~~~~~~~lWqSFd~PtDtlLpg~~l~~~~~~g~~~ 170 (748)
|+|+|.+.|+.+.+||+|+++... ..+++|+|+|+|||||++ +.++||| |||||+|||||+|+++++|..
T Consensus 81 G~Lvl~~~~~~~~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~---~~~lWqS--~ptdtlLpg~~~~~~l~~g~~- 154 (276)
T 3m7h_A 81 VQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD---SLALWNG--TPAIPLVPGAIDSLLLAPGSE- 154 (276)
T ss_dssp ESSSEEEEEGGGTEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE---EEEEEES--CTTSCCCCSCTTCEEECSSEE-
T ss_pred CCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCEEECC---CCEEECC--CCCCCCCCCCCCCCCCCCCCC-
T ss_conf 8699987579997899847876545556786699994899989548---9521175--433140245411211125863-
Q ss_pred EEEECCCCCCCCCCCEEEEECCCCCCCCEEEC-CCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCC-CEEEEEECC
Q ss_conf 48971699999993249933178888208960-8947897189887323586663135665588713898-128998214
Q 004501 171 YVTAWKSPDDPGSGNFSFTLDLAGFPQPLLYK-DDVKLWRAGPWTGQRFSGTPEMTRTFIFNITYIDNQD-EVYLCDGLN 248 (748)
Q Consensus 171 ~l~Sw~s~~dps~G~f~~~~~~~g~~~~~~~~-~~~~yw~~g~w~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 248 (748)
| ++.+||++|.|++.++++|. +++++ +..+||++++|++... .+.....-++.+.++.+ .+.++++.
T Consensus 155 -L---~S~~dps~G~fsl~l~~dGn--lvLy~~~~~~yW~Sgt~~~~~~----~l~l~~dGnLvl~d~~~~~vWsS~t~- 223 (276)
T 3m7h_A 155 -L---VQGVVYGAGASKLVFQGDGN--LVAYGPNGAATWNAGTQGKGAV----RAVFQGDGNLVVYGAGNAVLWHSHTG- 223 (276)
T ss_dssp -E---CTTCEEEETTEEEEECTTSC--EEEECTTSSEEEECCCTTTTCC----EEEECTTSCEEEECTTSCEEEECSCT-
T ss_pred -C---CCCCCCCCCEEEEEECCCCE--EEEEECCCEEEEECCCCCCCCE----EEEECCCCEEEEEECCCCEEEEECCC-
T ss_conf -2---24898889527885658825--9999599969998889898448----99995887699995999689983179-
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 786156999921574799998348873689973788
Q 004501 249 DLSTIARMILNETGFLQRFTWNNRDRRWIGYWTAPA 284 (748)
Q Consensus 249 ~~s~~~r~~L~~~G~l~~y~w~~~~~~W~~~~~~p~ 284 (748)
....+|++|+.||+|++|.| ...|..++..|.
T Consensus 224 -~~~~~rl~Ld~dGnLvly~~---~~~Wqsf~~~P~ 255 (276)
T 3m7h_A 224 -GHASAVLRLQANGSIAILDE---KPVWARFGFQPT 255 (276)
T ss_dssp -TCTTCEEEECTTSCEEEEEE---EEEEESSSCCTT
T ss_pred -CCCCEEEEECCCCCEEEECC---CCEEECCCCCCC
T ss_conf -98888999968942999838---886772574577
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=344.90 Aligned_cols=205 Identities=31% Similarity=0.513 Sum_probs=179.2
Q ss_pred CCCCCCCCCCCCCEEEEEEECC------CCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEE
Q ss_conf 9764461131385779997814------7850268980568-80049999999999987108985103458981895649
Q 004501 529 NFSTSNKLGQGGFGPVYKGKLS------NGQEIAVKRLSTT-SGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENML 601 (748)
Q Consensus 529 ~f~~~~~LG~G~fG~Vy~g~~~------~~~~vavK~l~~~-~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~l 601 (748)
+++..++||+|+||.||+|.+. +++.||||+++.. .....++|.+|+.++.+++|||||+++|+|.++...++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHHCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 997169987668873124-------------4567999999999999999999999689997064698899799879996
Q 004501 602 IYEFMPNKSLDYFIFDES-------------RKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMN 668 (748)
Q Consensus 602 v~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~ 668 (748)
|||||++|+|.+++.... ....+++.+++.++.|||+||.|||+.+ ||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 69971278611378520000135777777458111158988971328999999999992-999998889
Q 004501 669 PRISDFGTARVFGGEEILAITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIIT-GKKNTRIFN 736 (748)
Q Consensus 669 ~ki~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~ellt-G~~p~~~~~ 736 (748)
+||+|||+++.+...+.........||+.|||||++.+..++.++|||||||++|||+| |+.||....
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~ 252 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS 252 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 898876020233677740473451257765698998279999630001579999999968999999989
No 5
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=342.98 Aligned_cols=199 Identities=27% Similarity=0.418 Sum_probs=178.9
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 69764461131385779997814-78502689805688004999999999998710898510345898189564999716
Q 004501 528 DNFSTSNKLGQGGFGPVYKGKLS-NGQEIAVKRLSTTSGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENMLIYEFM 606 (748)
Q Consensus 528 ~~f~~~~~LG~G~fG~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~lv~e~~ 606 (748)
+.|++.++||+|+||.||++... +++.||||++........+.+.+|+.+|++++|||||++++++.+++..++|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCH
Q ss_conf 99876688731244567999999999999999999999689997064698899799879996699712786113785200
Q 004501 607 PNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMNPRISDFGTARVFGGEEIL 686 (748)
Q Consensus 607 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ki~DfGla~~~~~~~~~ 686 (748)
++|+|.+++.. ..+++.++..++.||+.||.|||+++ ||||||||+|||++.++.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 99828988761----69899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0013577777745811115898897132899999999999299999888
Q 004501 687 AITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIITGKKNTRIF 735 (748)
Q Consensus 687 ~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~elltG~~p~~~~ 735 (748)
.....+||+.|||||++.+..|+.++|||||||++|||++|+.||...
T Consensus 303 -~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~ 350 (423)
T 4fie_A 303 -RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE 350 (423)
T ss_dssp -CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf -434666474727999977999996899999999999999787998986
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=341.80 Aligned_cols=199 Identities=27% Similarity=0.418 Sum_probs=178.5
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 69764461131385779997814-78502689805688004999999999998710898510345898189564999716
Q 004501 528 DNFSTSNKLGQGGFGPVYKGKLS-NGQEIAVKRLSTTSGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENMLIYEFM 606 (748)
Q Consensus 528 ~~f~~~~~LG~G~fG~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~lv~e~~ 606 (748)
+.|++.++||+|+||.||++... +++.||||++........+.+.+|+.++++++|||||++++++.+++..++||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCH
Q ss_conf 99876688731244567999999999999999999999689997064698899799879996699712786113785200
Q 004501 607 PNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMNPRISDFGTARVFGGEEIL 686 (748)
Q Consensus 607 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ki~DfGla~~~~~~~~~ 686 (748)
++|+|.+++.. ..+++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 99808999871----89899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0013577777745811115898897132899999999999299999888
Q 004501 687 AITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIITGKKNTRIF 735 (748)
Q Consensus 687 ~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~elltG~~p~~~~ 735 (748)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||...
T Consensus 226 -~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~ 273 (346)
T 4fih_A 226 -RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE 273 (346)
T ss_dssp -CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf -534656275827999977999996899999999999999787998985
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=339.20 Aligned_cols=202 Identities=26% Similarity=0.444 Sum_probs=179.4
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 69764461131385779997814-7850268980568--80049999999999987108985103458981895649997
Q 004501 528 DNFSTSNKLGQGGFGPVYKGKLS-NGQEIAVKRLSTT--SGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENMLIYE 604 (748)
Q Consensus 528 ~~f~~~~~LG~G~fG~Vy~g~~~-~~~~vavK~l~~~--~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~lv~e 604 (748)
++|++.++||+|+||.||+++.. +++.||||++... .....+.+.+|+.++++++|||||++++++.++...++|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 16998766887312445679999999999999999999996899970646988997998799966997127861137852
Q 004501 605 FMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMNPRISDFGTARVFGGEE 684 (748)
Q Consensus 605 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ki~DfGla~~~~~~~ 684 (748)
|+++|+|.+++... +...+++.+...++.||+.||.|||+++ |+||||||+|||+++++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 88998399999973-8999978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 000013577777745811115898897132899999999999299999888
Q 004501 685 ILAITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIITGKKNTRIF 735 (748)
Q Consensus 685 ~~~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~elltG~~p~~~~ 735 (748)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||...
T Consensus 180 --~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~ 228 (350)
T 4b9d_A 180 --ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG 228 (350)
T ss_dssp --HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred --CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf --4101457883603999987999895999999999999999787998996
No 8
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=337.47 Aligned_cols=202 Identities=29% Similarity=0.408 Sum_probs=181.2
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCC---CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 69764461131385779997814-7850268980568---8004999999999998710898510345898189564999
Q 004501 528 DNFSTSNKLGQGGFGPVYKGKLS-NGQEIAVKRLSTT---SGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENMLIY 603 (748)
Q Consensus 528 ~~f~~~~~LG~G~fG~Vy~g~~~-~~~~vavK~l~~~---~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~lv~ 603 (748)
++|++.+.||+|+||.||+++.. +++.||||.+.+. .....+.+.+|++++++++|||||++++++.++...++||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 71699876688731244567999999999999999999999689997064698899799879996699712786113785
Q 004501 604 EFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMNPRISDFGTARVFGGE 683 (748)
Q Consensus 604 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ki~DfGla~~~~~~ 683 (748)
||+++|+|.+++.. ...+++.....++.||+.||.|||+++ |+||||||+|||+++++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~---~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRK---IGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 64899899999987---499999999999999999999999887---826878789969858988899876875025778
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2000013577777745811115898897132899999999999299999888
Q 004501 684 EILAITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIITGKKNTRIF 735 (748)
Q Consensus 684 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~elltG~~p~~~~ 735 (748)
.........+||+.|||||++.+..++.++||||+||++|||++|+.||...
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~ 237 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG 237 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7765436755680307998976899996898998999999997498998997
No 9
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=334.52 Aligned_cols=216 Identities=30% Similarity=0.449 Sum_probs=184.5
Q ss_pred EEHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC------CCEEEEEEECCCC-CCCHHHHHHHHHHHHHHCC-CCCCEE
Q ss_conf 1076799740697644611313857799978147------8502689805688-0049999999999987108-985103
Q 004501 518 FELSTLLAATDNFSTSNKLGQGGFGPVYKGKLSN------GQEIAVKRLSTTS-GQGIEELKNEVLLIAKLQH-RNLVKL 589 (748)
Q Consensus 518 ~~~~~~~~~~~~f~~~~~LG~G~fG~Vy~g~~~~------~~~vavK~l~~~~-~~~~~~~~~Ei~~l~~l~h-~nIv~l 589 (748)
++...++...++|++.++||+|+||.||+|.+.. .+.||||++.... ....+.|.+|+.++.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CCCEEEEEECCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 4589818-956499971699876688731244-------------56799999999999999999999968999706469
Q 004501 590 LGCCLEE-DENMLIYEFMPNKSLDYFIFDESR-------------KQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRD 655 (748)
Q Consensus 590 ~g~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~D 655 (748)
+|+|.+. ...++|||||++|+|.+++..... ...+++.+++.++.|||+||.|||+.+ |||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 889979987999669971278611378520000135777777458111158988971328999999999992-9999988
Q 004501 656 LKASNILLDEKMNPRISDFGTARVFGGEEILAITKRVVGTYGYMSPEYALDGVFSTKSDVFSFGVILLEIIT-GKKNTRI 734 (748)
Q Consensus 656 ikp~NIll~~~~~~ki~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~~~DVwSlGvil~ellt-G~~p~~~ 734 (748)
|||+|||+++++.+||+|||+|+.+..+..........||+.|||||++.+..++.++|||||||++|||++ |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CC
Q ss_conf 89
Q 004501 735 FN 736 (748)
Q Consensus 735 ~~ 736 (748)
..
T Consensus 291 ~~ 292 (353)
T 4ase_A 291 VK 292 (353)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
No 10
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=334.26 Aligned_cols=203 Identities=31% Similarity=0.501 Sum_probs=174.5
Q ss_pred HCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 40697644611313857799978147850268980568--8004999999999998710898510345898189564999
Q 004501 526 ATDNFSTSNKLGQGGFGPVYKGKLSNGQEIAVKRLSTT--SGQGIEELKNEVLLIAKLQHRNLVKLLGCCLEEDENMLIY 603 (748)
Q Consensus 526 ~~~~f~~~~~LG~G~fG~Vy~g~~~~~~~vavK~l~~~--~~~~~~~~~~Ei~~l~~l~h~nIv~l~g~~~~~~~~~lv~ 603 (748)
..+++++.++||+|+||.||+|++.+ .||||.++.. ..+..+.|.+|+.++++++|||||+++|++.+ +..++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 47994984498208886899999899--68999997268999999999999999985899887469999978-9589999
Q ss_pred EECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 71699876688731244567999999999999999999999689997064698899799879996699712786113785
Q 004501 604 EFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEKMNPRISDFGTARVFGGE 683 (748)
Q Consensus 604 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~Dikp~NIll~~~~~~ki~DfGla~~~~~~ 683 (748)
|||++|+|.+++.... ..+++.++..++.|||.||+|||+.+ ||||||||+|||+++++.+||+|||+|+.....
T Consensus 111 Ey~~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred ECCCCCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 7489987889875248--99999999999999999999997799---527855789978889990899441575424667
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 20000135777777458111158---988971328999999999992999998889
Q 004501 684 EILAITKRVVGTYGYMSPEYALD---GVFSTKSDVFSFGVILLEIITGKKNTRIFN 736 (748)
Q Consensus 684 ~~~~~~~~~~gt~~y~aPE~~~~---~~~s~~~DVwSlGvil~elltG~~p~~~~~ 736 (748)
..........||+.|||||++.. .+++.++|||||||++|||++|+.||....
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~ 241 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN 241 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 76403156446877249878614689987868775728999999997889989999
Done!