BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004502
(748 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 358 bits (919), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 228/620 (36%), Positives = 342/620 (55%), Gaps = 60/620 (9%)
Query: 24 YQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKY 83
Y + I ++ +++ LI+ SD+ +F E+L ++ N L A D +DP Y
Sbjct: 24 YIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTY 83
Query: 84 LKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSV--HYCP 141
++ E + V G + R + R + S IG ++ ++GI+ K + V+ ++ K+ H P
Sbjct: 84 QRDIEKVHVRIVG--IPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHP 141
Query: 142 -TTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNL-LVTEYGLCKYKDHQTLSVQEVPEK 199
F E ++ +PT + P + G L+ E K D Q +QE PE+
Sbjct: 142 DCMQEFEWPEDEEMPEVLEMPT--ICPKCGKPGQFRLIPEK--TKLIDWQKAVIQERPEE 197
Query: 200 SAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTY--KALPGKSKGSVNGVFRTVLIANNV 257
GQLPR +++I+EDDLVDS +PGDRV + G K +GS VF + +++
Sbjct: 198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGS-RAVFDIYMKVSSI 256
Query: 258 SLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVE 317
+ K + I + ED K IK +A+ D + +S+APSIYGH +K+A+ L + GGV
Sbjct: 257 EVSQKVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVP 316
Query: 318 KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQ 377
K L++ T +RGDI+++++GDP AKSQ+L+ I +AP A+ TTG+GS+ GLTAAV ++
Sbjct: 317 KVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK 375
Query: 378 ETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437
TGE LEAGA+VLAD G+ IDE DKM D+DRVAIHE MEQQTV+IAKAGI A LNAR
Sbjct: 376 GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435
Query: 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHR 497
+V+AA NP +G Y + NI LP ++LSRFDL+FI+ DQ + DR +++++L +H
Sbjct: 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPG-EQDRELANYILDVH- 493
Query: 498 YRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKY 557
GK T ++ + I L+KY
Sbjct: 494 --------------------------------------SGKST-----KNIIDIDTLRKY 510
Query: 558 IHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKM 617
I YA+ + P++T EA I + E+R SS L IT R LE +IR+S A+AKM
Sbjct: 511 IAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPIL-ITPRQLEALIRISEAYAKM 569
Query: 618 KLNRKISKSDVEAALKALNF 637
L ++++ D E A+ +
Sbjct: 570 ALKAEVTREDAERAINIMRL 589
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 164/370 (44%), Gaps = 77/370 (20%)
Query: 271 PEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDI 330
P +L+ +++A++D ++AP + G + K + L + V KN + +
Sbjct: 190 PAELEEFRELADKD-PLTTFARAIAP-LPGAEEVGKMLALQLFSCVGKNSER-------L 240
Query: 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMV 390
++++ G P V L + ++AP + R + LTA + D+ L AGA V
Sbjct: 241 HVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWA---LRAGAAV 297
Query: 391 LADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTY 450
LAD G++ +D + + R A+ E M++ TVT+ GI +LNARC+V+AA NP G
Sbjct: 298 LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTV--DGI--ALNARCAVLAAINP--GEQ 351
Query: 451 DRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLD 510
S P I L LS FDL+ + G+D
Sbjct: 352 WPSDPPIARIDLDQDFLSHFDLIAFL-------------------------------GVD 380
Query: 511 GSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYA-KHRIQPEL 569
R G +E DT+ + L++Y+ YA + PEL
Sbjct: 381 --PRPGEPEEQDTEVPSYT-----------------------LLRRYLLYAIREHPAPEL 415
Query: 570 TDEASEQIATTYAELRNSSSNAKTGG--TLPITARTLETIIRLSTAHAKMKLNRKISKSD 627
T+EA +++ Y R G TLP+T R LE++ RL+ AHA+M+L+ + D
Sbjct: 416 TEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPED 475
Query: 628 VEAALKALNF 637
V+ A + +++
Sbjct: 476 VDIAAELVDW 485
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|B Chain B, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|C Chain C, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|D Chain D, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|E Chain E, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|F Chain F, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
Length = 279
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 50/285 (17%)
Query: 14 EFYDFLELSIYQDEI-KAMINHKRCRLI-VNISDLYAFREDLPPRLLKNPVEYLQPFCDA 71
+F +F L Y+D + +A+ + R I V+ DL F DL L++ P + ++ A
Sbjct: 17 KFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIR----A 72
Query: 72 ATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRP 131
A RNID L++ + + F G +S + R+L S+FIG V V+GIV K +RP
Sbjct: 73 AQQAIRNID--RLRKNVDLNIRFSG--ISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRP 128
Query: 132 KVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLC-------- 183
++VK+V C G + +T +T ++TE LC
Sbjct: 129 RIVKAVFEC--RGCM---RHHAVTQSTN----------------MITEPSLCSECGGRSF 167
Query: 184 -------KYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKAL 236
++ D QTL +QE E + G+ PR + V++EDDLVD+ PGD V + GT + +
Sbjct: 168 RLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTV 227
Query: 237 PGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIA 281
+ F+ + N L +E + ED + IK++A
Sbjct: 228 ----RDERTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELA 268
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 10/212 (4%)
Query: 24 YQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKY 83
Y + I ++ +++ LI+ SD+ +F E+L ++ N L A D +DP Y
Sbjct: 30 YIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTY 89
Query: 84 LKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSV--HYCP 141
++ E + V G + R + R + S IG ++ ++GI+ K + V+ ++ K+ H P
Sbjct: 90 QRDIEKVHVRIVG--IPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHP 147
Query: 142 -TTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNL-LVTEYGLCKYKDHQTLSVQEVPEK 199
F E ++ +PT + P + G L+ E K D Q +QE PE+
Sbjct: 148 DCMQEFEWPEDEEMPEVLEMPT--ICPKCGKPGQFRLIPEK--TKLIDWQKAVIQERPEE 203
Query: 200 SAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVG 231
GQLPR +++I+EDDLVDS +PGDRV + G
Sbjct: 204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTG 235
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 376 DQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434
D+E RR+ A + AD G+VCI F QDR ++ E ++ + + A L+
Sbjct: 105 DREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLH 163
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 380 GERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSV 439
GE+ E G + A+RG + IDE + + D + +V + + + G+ AR +
Sbjct: 131 GEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVL 190
Query: 440 VAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMD 481
V + NP G L P LL RF L VL D
Sbjct: 191 VGSGNPEEG----DLRP--------QLLDRFGLSVEVLSPRD 220
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 376 DQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA 435
D+E RR+ A + AD G+VCI F +DR ++ E + + + A LN
Sbjct: 75 DREENIRRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLN- 133
Query: 436 RCSVVAAANPIYGTYDRS 453
+ + + G Y R+
Sbjct: 134 ----ICESRDVKGLYKRA 147
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 376 DQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434
D+E RR+ A + AD G+VCI F QDR ++ E ++ + + A L+
Sbjct: 86 DREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLH 144
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 429 IHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL----FIVLDQMDPDI 484
IH +L A + AN I L K GL DSLL R DL F V Q D+
Sbjct: 45 IHDALKANAHAIEEANKI------DLAVAKETGLADSLLKRLDLFKGDKFEVXLQGIKDV 98
Query: 485 DRRISDHVLRMHRYRSVMDG 504
+ D V ++ R + DG
Sbjct: 99 -AELEDPVGKVKXARELDDG 117
>pdb|3KAS|B Chain B, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 162
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 241 KGSVNGVFRTVLI-ANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIY 299
+G VN T LI +++S+L KE + IY PEDL + ++ N+L
Sbjct: 20 RGGVN----TFLIRVSDISVLMKEYDVSIYEPEDLGNCLNKSDSSWAIHWFSNAL----- 70
Query: 300 GHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN 331
GH W+ +L K K G++++ +I+
Sbjct: 71 GHDWLMDPPMLCR----NKTKKEGSNIQFNIS 98
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 376 DQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434
D+E RR+ A + AD G+VCI F QDR ++ E ++ + + A L+
Sbjct: 85 DREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLH 143
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 376 DQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434
D+E RR+ A + AD G+VCI F QDR ++ E ++ + + A L+
Sbjct: 58 DREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLH 116
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 170 DEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAI 229
D++G++ +T++G KY T + P+ AP V S KP ++
Sbjct: 140 DKNGHIKITDFGFAKYVPDVTYXLCGTPDYIAPE--------------VVSTKPYNKSID 185
Query: 230 VGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDL 289
++ L + + + + +LN E P + ED+K + D
Sbjct: 186 WWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQR 245
Query: 290 LGN--SLAPSIYGHSWIKKAV 308
LGN + + H W K+ V
Sbjct: 246 LGNLQNGTEDVKNHPWFKEVV 266
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 304 IKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLR 347
I+K VI L ++ N+K G H+RG I ++++ S A S + R
Sbjct: 52 IRKPVIEYYLNCIDYNVKKGKHIRGKI-LVLISSLSSAYSNIKR 94
>pdb|3NE8|A Chain A, The Crystal Structure Of A Domain From
N-Acetylmuramoyl-L-Alanine Amidase Of Bartonella
Henselae Str. Houston-1
Length = 234
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 498 YRSVMDGGEGGLDGSSR-------------YGR--EDEVDTDASVFVKYNR-----MLHG 537
+R V+D G GG+DG +R + R DE+ + V R +
Sbjct: 5 FRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLS 64
Query: 538 KRTQRGQKRDT---LTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRN 586
+R ++ Q+ D ++I +H + ++DEAS+ IA + AE N
Sbjct: 65 ERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESEN 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,578,200
Number of Sequences: 62578
Number of extensions: 901527
Number of successful extensions: 2265
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2245
Number of HSP's gapped (non-prelim): 18
length of query: 748
length of database: 14,973,337
effective HSP length: 106
effective length of query: 642
effective length of database: 8,340,069
effective search space: 5354324298
effective search space used: 5354324298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)