Query 004502
Match_columns 748
No_of_seqs 436 out of 3211
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 00:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0479 DNA replication licens 100.0 1E-141 3E-146 1131.6 63.2 741 4-747 6-818 (818)
2 COG1241 MCM2 Predicted ATPase 100.0 4E-122 9E-127 1040.1 65.4 659 23-746 18-680 (682)
3 KOG0480 DNA replication licens 100.0 2E-123 5E-128 1004.8 49.9 599 3-648 17-656 (764)
4 PTZ00111 DNA replication licen 100.0 1E-115 2E-120 1006.9 68.3 703 4-745 81-909 (915)
5 KOG0482 DNA replication licens 100.0 9E-118 2E-122 935.9 41.9 655 10-742 16-714 (721)
6 KOG0478 DNA replication licens 100.0 3E-116 7E-121 956.1 42.8 654 7-745 129-802 (804)
7 KOG0481 DNA replication licens 100.0 1E-111 2E-116 890.8 52.6 669 7-739 24-718 (729)
8 KOG0477 DNA replication licens 100.0 4E-106 9E-111 864.9 34.9 598 7-641 157-763 (854)
9 smart00350 MCM minichromosome 100.0 2.6E-93 5.6E-98 810.7 54.9 496 102-639 2-508 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 1.9E-71 4E-76 598.7 12.1 331 273-640 1-331 (331)
11 COG0606 Predicted ATPase with 100.0 1.4E-28 3E-33 264.7 16.2 266 296-635 179-485 (490)
12 TIGR00368 Mg chelatase-related 100.0 1E-27 2.3E-32 269.5 22.0 268 297-634 193-498 (499)
13 PRK09862 putative ATP-dependen 100.0 1.9E-27 4.2E-32 265.9 18.8 263 297-635 192-492 (506)
14 TIGR02442 Cob-chelat-sub cobal 99.9 1.8E-26 3.9E-31 269.1 25.4 265 295-636 3-305 (633)
15 TIGR02030 BchI-ChlI magnesium 99.9 5.5E-26 1.2E-30 243.9 24.5 268 296-643 4-314 (337)
16 PRK13407 bchI magnesium chelat 99.9 1.7E-25 3.8E-30 239.4 25.3 267 296-643 8-311 (334)
17 TIGR02031 BchD-ChlD magnesium 99.9 1.3E-25 2.7E-30 259.1 25.1 254 302-636 1-259 (589)
18 CHL00081 chlI Mg-protoporyphyr 99.9 2.1E-25 4.6E-30 238.9 23.1 269 296-643 17-327 (350)
19 PF01078 Mg_chelatase: Magnesi 99.9 1.1E-26 2.4E-31 228.9 11.3 168 296-477 3-200 (206)
20 COG1239 ChlI Mg-chelatase subu 99.9 5.2E-23 1.1E-27 219.1 22.1 266 293-635 14-322 (423)
21 PRK13531 regulatory ATPase Rav 99.9 4.8E-22 1E-26 218.4 24.6 271 286-642 10-287 (498)
22 PRK13406 bchD magnesium chelat 99.9 3.4E-22 7.4E-27 228.4 23.2 237 301-635 8-250 (584)
23 COG0714 MoxR-like ATPases [Gen 99.8 1.4E-19 3E-24 196.4 23.6 273 287-635 15-296 (329)
24 TIGR00764 lon_rel lon-related 99.8 3.8E-18 8.2E-23 197.5 23.4 173 383-637 207-393 (608)
25 PF07726 AAA_3: ATPase family 99.8 5.6E-19 1.2E-23 160.3 9.5 126 331-471 1-130 (131)
26 TIGR01650 PD_CobS cobaltochela 99.8 3.6E-17 7.8E-22 172.9 23.0 157 331-489 66-229 (327)
27 TIGR02640 gas_vesic_GvpN gas v 99.8 4E-17 8.7E-22 171.3 20.3 208 331-633 23-255 (262)
28 COG2255 RuvB Holliday junction 99.7 1.8E-16 3.9E-21 160.0 22.7 214 297-636 27-252 (332)
29 PF05496 RuvB_N: Holliday junc 99.7 2.5E-17 5.5E-22 163.6 13.8 148 295-476 23-176 (233)
30 PF14551 MCM_N: MCM N-terminal 99.7 1.7E-17 3.7E-22 153.3 6.9 109 11-121 1-121 (121)
31 TIGR02902 spore_lonB ATP-depen 99.7 9.3E-16 2E-20 175.8 22.4 224 297-633 66-330 (531)
32 PRK13765 ATP-dependent proteas 99.6 1.1E-14 2.3E-19 168.1 21.6 166 384-633 217-398 (637)
33 PRK00080 ruvB Holliday junctio 99.6 6.1E-14 1.3E-18 152.3 22.7 219 296-635 25-250 (328)
34 PF07728 AAA_5: AAA domain (dy 99.6 1.6E-15 3.6E-20 143.5 8.3 128 331-470 1-139 (139)
35 TIGR00635 ruvB Holliday juncti 99.6 1.7E-13 3.6E-18 147.5 24.0 218 296-634 4-228 (305)
36 PRK05342 clpX ATP-dependent pr 99.6 1.6E-14 3.5E-19 159.6 15.4 155 292-446 67-240 (412)
37 COG3829 RocR Transcriptional r 99.6 1.6E-14 3.4E-19 158.5 14.2 164 293-476 242-415 (560)
38 TIGR00382 clpX endopeptidase C 99.6 2.6E-14 5.7E-19 157.0 14.0 201 288-490 69-328 (413)
39 COG3604 FhlA Transcriptional r 99.5 5.7E-14 1.2E-18 152.0 12.2 212 327-628 244-465 (550)
40 COG2204 AtoC Response regulato 99.5 2.3E-13 4.9E-18 149.9 15.5 239 293-630 138-386 (464)
41 CHL00181 cbbX CbbX; Provisiona 99.5 3.9E-13 8.5E-18 142.4 15.5 173 287-494 14-210 (287)
42 PHA02244 ATPase-like protein 99.5 1.6E-13 3.5E-18 146.6 12.4 140 331-481 121-262 (383)
43 TIGR02974 phageshock_pspF psp 99.5 3.5E-13 7.5E-18 145.7 13.8 135 330-473 23-165 (329)
44 TIGR02880 cbbX_cfxQ probable R 99.5 5.7E-13 1.2E-17 141.3 15.1 218 294-621 20-259 (284)
45 TIGR02881 spore_V_K stage V sp 99.4 2.2E-12 4.9E-17 135.5 16.8 220 297-618 7-241 (261)
46 COG1221 PspF Transcriptional r 99.4 9.5E-13 2.1E-17 142.6 13.9 199 331-620 103-314 (403)
47 COG0466 Lon ATP-dependent Lon 99.4 1.8E-12 3.9E-17 145.8 14.3 170 291-491 318-506 (782)
48 PRK10787 DNA-binding ATP-depen 99.4 6.6E-12 1.4E-16 149.4 18.3 175 292-493 318-506 (784)
49 PRK11608 pspF phage shock prot 99.4 4.5E-12 9.8E-17 137.2 15.0 139 331-478 31-178 (326)
50 COG1223 Predicted ATPase (AAA+ 99.4 3E-12 6.5E-17 127.7 11.9 148 292-476 117-281 (368)
51 TIGR02329 propionate_PrpR prop 99.4 9.6E-12 2.1E-16 141.8 17.2 219 330-630 236-465 (526)
52 COG1222 RPT1 ATP-dependent 26S 99.4 2.3E-11 4.9E-16 127.2 18.1 134 331-499 187-337 (406)
53 PRK11034 clpA ATP-dependent Cl 99.4 6.6E-12 1.4E-16 148.3 16.0 203 285-494 447-667 (758)
54 TIGR02903 spore_lon_C ATP-depe 99.4 2.6E-11 5.6E-16 141.4 20.2 172 293-490 151-363 (615)
55 KOG0734 AAA+-type ATPase conta 99.4 3.9E-12 8.4E-17 137.7 12.2 188 331-633 339-539 (752)
56 PRK15424 propionate catabolism 99.4 2E-11 4.4E-16 139.0 18.5 136 331-475 244-396 (538)
57 TIGR01817 nifA Nif-specific re 99.4 7E-12 1.5E-16 145.1 14.9 209 330-629 220-439 (534)
58 PRK05022 anaerobic nitric oxid 99.3 1.5E-11 3.4E-16 141.1 16.2 211 330-628 211-436 (509)
59 COG2256 MGS1 ATPase related to 99.3 1.1E-11 2.3E-16 131.6 13.5 135 297-483 25-167 (436)
60 PRK11388 DNA-binding transcrip 99.3 1.4E-11 3.1E-16 145.6 15.3 210 330-632 349-568 (638)
61 KOG2004 Mitochondrial ATP-depe 99.3 1.6E-11 3.5E-16 137.3 13.3 170 293-492 408-595 (906)
62 CHL00195 ycf46 Ycf46; Provisio 99.3 2.4E-11 5.2E-16 137.1 14.9 160 296-494 228-406 (489)
63 TIGR00763 lon ATP-dependent pr 99.3 3.7E-11 8.1E-16 144.3 17.4 178 288-492 312-504 (775)
64 TIGR02639 ClpA ATP-dependent C 99.3 3E-11 6.5E-16 144.4 15.0 201 286-494 444-663 (731)
65 PRK03992 proteasome-activating 99.3 5E-11 1.1E-15 132.1 15.3 193 331-638 167-375 (389)
66 COG0542 clpA ATP-binding subun 99.3 9.9E-11 2.1E-15 135.7 17.3 195 286-494 481-706 (786)
67 PRK10820 DNA-binding transcrip 99.3 5.5E-11 1.2E-15 136.6 15.2 207 331-628 229-447 (520)
68 PF00158 Sigma54_activat: Sigm 99.3 5.2E-12 1.1E-16 123.2 5.4 134 330-472 23-164 (168)
69 PRK10923 glnG nitrogen regulat 99.2 1.3E-10 2.7E-15 132.8 15.1 213 329-632 161-385 (469)
70 TIGR02915 PEP_resp_reg putativ 99.2 1.3E-10 2.8E-15 131.8 15.1 209 330-628 163-382 (445)
71 PRK14962 DNA polymerase III su 99.2 3.7E-10 8E-15 127.4 18.1 139 295-476 13-173 (472)
72 PTZ00454 26S protease regulato 99.2 2.2E-10 4.7E-15 126.6 15.6 191 331-636 181-387 (398)
73 CHL00095 clpC Clp protease ATP 99.2 6.8E-10 1.5E-14 134.3 21.1 217 268-494 471-733 (821)
74 TIGR03346 chaperone_ClpB ATP-d 99.2 4.3E-10 9.3E-15 136.4 19.4 198 287-494 556-777 (852)
75 TIGR03345 VI_ClpV1 type VI sec 99.2 3.1E-10 6.6E-15 136.8 17.9 197 287-494 557-781 (852)
76 COG1219 ClpX ATP-dependent pro 99.2 3.1E-11 6.8E-16 123.8 7.9 156 289-446 54-229 (408)
77 PRK15429 formate hydrogenlyase 99.2 1.8E-10 3.9E-15 137.2 15.3 160 297-475 377-544 (686)
78 TIGR01242 26Sp45 26S proteasom 99.2 1.9E-10 4.1E-15 126.8 13.5 189 331-634 158-362 (364)
79 PRK14956 DNA polymerase III su 99.2 7.8E-10 1.7E-14 123.0 17.6 144 294-476 16-177 (484)
80 PRK05201 hslU ATP-dependent pr 99.2 1.1E-09 2.3E-14 119.3 18.2 150 393-620 249-411 (443)
81 PRK11361 acetoacetate metaboli 99.2 3.4E-10 7.5E-15 128.8 15.1 212 330-632 167-390 (457)
82 PF07724 AAA_2: AAA domain (Cd 99.2 3.3E-11 7.2E-16 117.9 5.5 136 331-473 5-171 (171)
83 PRK14949 DNA polymerase III su 99.2 2.1E-09 4.6E-14 126.1 21.3 139 296-476 16-175 (944)
84 TIGR01241 FtsH_fam ATP-depende 99.1 4.6E-10 1E-14 128.7 15.6 129 331-492 90-237 (495)
85 PF12775 AAA_7: P-loop contain 99.1 7.7E-10 1.7E-14 116.4 15.8 154 331-497 35-197 (272)
86 TIGR02928 orc1/cdc6 family rep 99.1 6.6E-09 1.4E-13 114.7 23.8 127 568-740 220-350 (365)
87 PRK13342 recombination factor 99.1 7.6E-10 1.7E-14 124.0 16.4 137 297-483 13-154 (413)
88 TIGR00390 hslU ATP-dependent p 99.1 9.5E-10 2.1E-14 119.6 15.9 151 392-620 246-409 (441)
89 PRK10865 protein disaggregatio 99.1 1.2E-09 2.6E-14 132.0 18.7 197 286-494 558-780 (857)
90 PLN03025 replication factor C 99.1 1E-09 2.2E-14 118.8 16.1 138 297-476 14-155 (319)
91 CHL00176 ftsH cell division pr 99.1 6.2E-10 1.3E-14 129.6 15.1 164 296-491 183-364 (638)
92 smart00763 AAA_PrkA PrkA AAA d 99.1 4.1E-10 9E-15 120.8 12.5 100 386-495 229-329 (361)
93 KOG0738 AAA+-type ATPase [Post 99.1 1E-09 2.2E-14 115.5 15.0 157 297-494 213-396 (491)
94 PRK00411 cdc6 cell division co 99.1 1.1E-08 2.5E-13 114.0 24.3 127 568-740 228-358 (394)
95 PRK15115 response regulator Gl 99.1 1.2E-09 2.5E-14 124.0 16.4 212 329-631 157-380 (444)
96 PRK14961 DNA polymerase III su 99.1 4.1E-09 8.9E-14 116.0 20.1 138 297-476 17-175 (363)
97 PTZ00112 origin recognition co 99.1 8.1E-09 1.8E-13 119.5 22.8 303 294-742 753-1088(1164)
98 PRK07003 DNA polymerase III su 99.1 4.5E-09 9.8E-14 121.2 20.6 141 297-476 17-175 (830)
99 PTZ00361 26 proteosome regulat 99.1 6.8E-10 1.5E-14 123.6 13.2 191 331-636 219-425 (438)
100 KOG2028 ATPase related to the 99.1 9.4E-10 2E-14 114.6 12.0 146 297-491 139-292 (554)
101 KOG0730 AAA+-type ATPase [Post 99.1 6.3E-10 1.4E-14 124.5 11.1 156 297-488 435-610 (693)
102 PRK13341 recombination factor 99.1 1.6E-09 3.5E-14 127.7 15.2 150 297-493 29-181 (725)
103 TIGR01818 ntrC nitrogen regula 99.1 1.9E-09 4.2E-14 122.8 15.4 214 329-632 157-381 (463)
104 PRK08691 DNA polymerase III su 99.1 1.5E-08 3.4E-13 116.8 22.5 141 297-476 17-175 (709)
105 PRK14960 DNA polymerase III su 99.0 5.6E-09 1.2E-13 119.3 18.3 138 297-476 16-174 (702)
106 COG3283 TyrR Transcriptional r 99.0 1.4E-09 3E-14 113.3 11.6 128 331-472 229-364 (511)
107 TIGR02639 ClpA ATP-dependent C 99.0 2.6E-09 5.5E-14 127.9 15.7 154 296-493 182-358 (731)
108 PRK14957 DNA polymerase III su 99.0 5.9E-09 1.3E-13 118.9 17.5 140 297-476 17-175 (546)
109 PRK06645 DNA polymerase III su 99.0 6.1E-09 1.3E-13 118.1 17.5 141 297-476 22-184 (507)
110 PRK14958 DNA polymerase III su 99.0 5.8E-09 1.2E-13 119.0 17.0 140 297-476 17-175 (509)
111 PRK14964 DNA polymerase III su 99.0 5.1E-09 1.1E-13 117.8 15.4 142 296-476 13-172 (491)
112 COG1224 TIP49 DNA helicase TIP 99.0 2E-08 4.4E-13 104.9 18.4 146 394-640 292-437 (450)
113 KOG0737 AAA+-type ATPase [Post 99.0 4.2E-10 9E-15 118.5 6.0 173 297-496 93-277 (386)
114 PRK12323 DNA polymerase III su 99.0 6.4E-09 1.4E-13 118.5 15.1 138 296-476 16-180 (700)
115 PRK10365 transcriptional regul 99.0 7E-09 1.5E-13 117.5 15.4 135 331-473 164-305 (441)
116 TIGR03420 DnaA_homol_Hda DnaA 99.0 1.5E-08 3.2E-13 104.0 16.4 177 331-632 40-225 (226)
117 KOG0736 Peroxisome assembly fa 99.0 9.1E-09 2E-13 116.5 15.8 168 297-494 673-858 (953)
118 KOG0731 AAA+-type ATPase conta 99.0 5.1E-09 1.1E-13 120.8 13.9 154 271-498 320-496 (774)
119 PRK07994 DNA polymerase III su 99.0 1.5E-08 3.3E-13 117.3 17.9 140 296-476 16-175 (647)
120 cd00009 AAA The AAA+ (ATPases 99.0 2.7E-09 5.9E-14 100.3 9.4 143 300-476 2-149 (151)
121 COG3284 AcoR Transcriptional a 99.0 1.6E-09 3.6E-14 121.5 9.0 141 326-476 333-481 (606)
122 PF00004 AAA: ATPase family as 98.9 7.1E-10 1.5E-14 103.2 4.9 116 332-476 1-130 (132)
123 PRK08903 DnaA regulatory inact 98.9 2.7E-08 5.9E-13 102.3 17.1 175 331-633 44-224 (227)
124 PRK05896 DNA polymerase III su 98.9 1.2E-08 2.6E-13 116.5 15.6 143 294-476 14-175 (605)
125 CHL00206 ycf2 Ycf2; Provisiona 98.9 8.7E-09 1.9E-13 127.0 15.2 39 597-635 1839-1877(2281)
126 COG5271 MDN1 AAA ATPase contai 98.9 1.3E-08 2.9E-13 121.0 15.8 135 331-475 1545-1687(4600)
127 PRK14951 DNA polymerase III su 98.9 1E-07 2.2E-12 110.3 22.9 139 297-476 17-180 (618)
128 PRK00440 rfc replication facto 98.9 3E-08 6.4E-13 107.2 17.6 134 297-472 18-155 (319)
129 PRK14952 DNA polymerase III su 98.9 2.3E-08 5E-13 115.1 16.8 139 295-476 12-174 (584)
130 PRK11331 5-methylcytosine-spec 98.9 1E-08 2.3E-13 112.9 13.3 156 297-477 176-357 (459)
131 PRK08451 DNA polymerase III su 98.9 3.5E-08 7.6E-13 112.1 17.7 142 296-476 14-173 (535)
132 COG0465 HflB ATP-dependent Zn 98.9 1.1E-08 2.5E-13 116.0 13.5 132 331-499 185-335 (596)
133 TIGR01243 CDC48 AAA family ATP 98.9 1.1E-08 2.3E-13 123.0 14.1 159 297-490 454-632 (733)
134 TIGR03689 pup_AAA proteasome A 98.9 6.3E-09 1.4E-13 117.5 10.8 134 331-494 218-379 (512)
135 PRK14963 DNA polymerase III su 98.9 5.1E-08 1.1E-12 111.0 18.2 142 295-476 13-172 (504)
136 PRK14965 DNA polymerase III su 98.9 2.4E-07 5.1E-12 107.7 24.0 140 297-476 17-175 (576)
137 PRK12402 replication factor C 98.9 7.1E-08 1.5E-12 105.2 18.5 112 296-420 15-152 (337)
138 PRK07764 DNA polymerase III su 98.9 9.9E-08 2.1E-12 114.1 20.6 140 297-476 16-176 (824)
139 PRK14959 DNA polymerase III su 98.9 4.9E-08 1.1E-12 112.1 17.3 137 297-471 17-171 (624)
140 COG0464 SpoVK ATPases of the A 98.9 3.1E-08 6.7E-13 113.8 15.4 130 331-493 278-423 (494)
141 PRK05563 DNA polymerase III su 98.9 8.6E-08 1.9E-12 110.9 18.9 141 296-476 16-175 (559)
142 PRK10733 hflB ATP-dependent me 98.9 2E-08 4.4E-13 118.2 14.0 126 331-489 187-331 (644)
143 PRK14955 DNA polymerase III su 98.9 3.5E-08 7.6E-13 109.9 15.2 121 288-419 4-153 (397)
144 KOG0989 Replication factor C, 98.8 2.4E-07 5.2E-12 95.6 18.8 134 297-470 37-180 (346)
145 COG1220 HslU ATP-dependent pro 98.8 2.1E-08 4.5E-13 104.1 11.1 67 289-356 8-77 (444)
146 PRK07133 DNA polymerase III su 98.8 3.2E-07 6.9E-12 107.1 22.2 141 297-476 19-174 (725)
147 KOG0733 Nuclear AAA ATPase (VC 98.8 1.4E-08 3.1E-13 112.3 9.9 165 297-496 512-695 (802)
148 PRK14969 DNA polymerase III su 98.8 1.3E-07 2.7E-12 108.7 18.1 139 297-476 17-175 (527)
149 TIGR02397 dnaX_nterm DNA polym 98.8 8.5E-08 1.8E-12 105.4 16.1 142 296-476 14-173 (355)
150 PRK06647 DNA polymerase III su 98.8 1.1E-07 2.5E-12 109.5 17.4 141 297-476 17-175 (563)
151 TIGR03345 VI_ClpV1 type VI sec 98.8 5.4E-08 1.2E-12 117.5 14.8 209 294-587 185-413 (852)
152 KOG0739 AAA+-type ATPase [Post 98.8 7.7E-09 1.7E-13 105.4 6.0 149 297-484 134-303 (439)
153 PRK14953 DNA polymerase III su 98.8 1.4E-07 3.1E-12 107.1 16.8 139 297-476 17-175 (486)
154 PRK11034 clpA ATP-dependent Cl 98.8 5.3E-08 1.1E-12 115.5 13.6 207 297-585 187-410 (758)
155 KOG0745 Putative ATP-dependent 98.8 3.8E-08 8.2E-13 105.2 10.9 100 330-429 227-341 (564)
156 PRK06305 DNA polymerase III su 98.8 3.6E-07 7.7E-12 103.2 19.2 141 297-476 18-177 (451)
157 PLN00020 ribulose bisphosphate 98.7 1.6E-08 3.5E-13 107.7 7.5 140 331-492 150-310 (413)
158 COG1474 CDC6 Cdc6-related prot 98.7 7.2E-07 1.6E-11 97.7 20.2 273 331-740 44-334 (366)
159 PRK14970 DNA polymerase III su 98.7 7.3E-07 1.6E-11 98.6 20.5 134 297-471 18-160 (367)
160 PRK09111 DNA polymerase III su 98.7 3.7E-07 8E-12 105.8 18.2 140 297-476 25-188 (598)
161 KOG1942 DNA helicase, TBP-inte 98.7 5.9E-07 1.3E-11 91.6 17.2 146 394-639 297-442 (456)
162 PRK14950 DNA polymerase III su 98.7 3.3E-07 7.1E-12 107.0 17.9 113 295-419 15-146 (585)
163 PRK14954 DNA polymerase III su 98.7 5.4E-07 1.2E-11 104.7 18.2 110 297-419 17-153 (620)
164 PRK08084 DNA replication initi 98.7 3.5E-07 7.5E-12 94.6 14.2 49 568-633 186-234 (235)
165 KOG0727 26S proteasome regulat 98.7 1.5E-07 3.3E-12 93.9 10.7 127 331-488 191-334 (408)
166 PRK09087 hypothetical protein; 98.6 5E-07 1.1E-11 92.7 14.9 175 331-635 46-222 (226)
167 PRK06620 hypothetical protein; 98.6 5.3E-07 1.1E-11 91.7 14.8 48 568-632 166-213 (214)
168 PHA02544 44 clamp loader, smal 98.6 1.6E-07 3.5E-12 101.6 11.4 149 297-493 22-173 (316)
169 CHL00095 clpC Clp protease ATP 98.6 4.8E-07 1E-11 109.8 16.5 203 296-587 179-404 (821)
170 KOG0652 26S proteasome regulat 98.6 2.4E-07 5.1E-12 92.9 11.0 133 331-498 207-356 (424)
171 PRK14948 DNA polymerase III su 98.6 1E-06 2.2E-11 102.9 17.9 142 296-476 16-177 (620)
172 PRK04195 replication factor C 98.6 1E-06 2.3E-11 100.7 17.8 153 297-492 15-172 (482)
173 PHA01747 putative ATP-dependen 98.6 3.7E-07 8E-12 96.6 12.7 168 287-471 150-336 (425)
174 TIGR01243 CDC48 AAA family ATP 98.6 3E-07 6.5E-12 110.5 13.6 125 331-490 214-356 (733)
175 KOG0733 Nuclear AAA ATPase (VC 98.6 1.1E-07 2.4E-12 105.5 8.7 133 331-494 225-375 (802)
176 PRK14971 DNA polymerase III su 98.6 1E-06 2.3E-11 102.8 17.2 140 297-476 18-177 (614)
177 COG5271 MDN1 AAA ATPase contai 98.6 5E-07 1.1E-11 108.2 13.5 134 329-470 888-1026(4600)
178 PRK10865 protein disaggregatio 98.6 7.2E-07 1.6E-11 108.2 15.5 150 296-489 178-350 (857)
179 PF13337 Lon_2: Putative ATP-d 98.6 3E-06 6.6E-11 93.0 18.7 259 273-634 161-430 (457)
180 PRK08727 hypothetical protein; 98.6 1.5E-06 3.2E-11 89.8 15.4 115 331-484 43-166 (233)
181 PRK06893 DNA replication initi 98.6 6.8E-07 1.5E-11 92.1 12.8 180 331-633 41-228 (229)
182 PRK12422 chromosomal replicati 98.5 3.5E-07 7.6E-12 102.9 11.1 187 331-633 143-341 (445)
183 COG1067 LonB Predicted ATP-dep 98.5 1.3E-06 2.7E-11 101.2 15.8 224 331-636 133-400 (647)
184 PRK07940 DNA polymerase III su 98.5 3.9E-07 8.5E-12 100.7 10.5 158 295-483 4-179 (394)
185 TIGR02688 conserved hypothetic 98.5 2.5E-06 5.5E-11 93.1 16.4 135 284-445 173-312 (449)
186 PRK14087 dnaA chromosomal repl 98.5 4.7E-07 1E-11 102.2 11.2 194 331-634 143-347 (450)
187 PF12774 AAA_6: Hydrolytic ATP 98.5 3.6E-06 7.9E-11 86.3 16.1 137 331-494 34-178 (231)
188 KOG0742 AAA+-type ATPase [Post 98.5 4.3E-07 9.3E-12 96.4 9.3 135 331-497 386-532 (630)
189 TIGR00362 DnaA chromosomal rep 98.5 6.1E-07 1.3E-11 100.5 11.2 188 331-634 138-336 (405)
190 TIGR03346 chaperone_ClpB ATP-d 98.5 4.5E-07 9.8E-12 110.4 10.4 157 297-490 174-346 (852)
191 KOG0740 AAA+-type ATPase [Post 98.5 2.2E-07 4.7E-12 101.6 6.4 170 296-496 153-336 (428)
192 PRK00149 dnaA chromosomal repl 98.4 6.4E-07 1.4E-11 101.6 10.3 189 331-635 150-349 (450)
193 PRK14086 dnaA chromosomal repl 98.4 1.2E-06 2.6E-11 100.5 11.4 188 331-634 316-514 (617)
194 COG2812 DnaX DNA polymerase II 98.4 1.1E-06 2.4E-11 98.9 10.8 142 293-476 13-175 (515)
195 KOG1051 Chaperone HSP104 and r 98.4 8.3E-07 1.8E-11 104.9 10.1 147 286-446 552-711 (898)
196 KOG0744 AAA+-type ATPase [Post 98.4 1E-06 2.2E-11 91.3 9.1 128 331-487 179-334 (423)
197 KOG0743 AAA+-type ATPase [Post 98.4 6E-07 1.3E-11 97.5 7.8 128 331-494 237-384 (457)
198 KOG0991 Replication factor C, 98.4 2.7E-07 5.8E-12 91.4 4.5 136 293-473 24-167 (333)
199 KOG0728 26S proteasome regulat 98.4 2.6E-06 5.7E-11 85.2 10.9 133 331-498 183-332 (404)
200 TIGR03015 pepcterm_ATPase puta 98.4 7.1E-06 1.5E-10 86.5 14.9 54 567-636 214-267 (269)
201 PRK05642 DNA replication initi 98.3 5.2E-06 1.1E-10 85.8 13.1 114 331-483 47-169 (234)
202 KOG0735 AAA+-type ATPase [Post 98.3 1.7E-06 3.7E-11 97.7 9.7 164 297-492 668-847 (952)
203 PF14532 Sigma54_activ_2: Sigm 98.3 5.8E-07 1.3E-11 84.9 4.4 109 331-473 23-131 (138)
204 COG4650 RtcR Sigma54-dependent 98.3 3.7E-07 8E-12 93.0 3.2 138 327-473 206-354 (531)
205 PRK14088 dnaA chromosomal repl 98.3 2.9E-06 6.3E-11 95.6 10.5 50 568-634 282-331 (440)
206 PF06068 TIP49: TIP49 C-termin 98.2 4.1E-05 9E-10 82.0 17.3 67 394-476 279-345 (398)
207 PF05673 DUF815: Protein of un 98.2 2.3E-05 4.9E-10 79.9 14.1 162 297-494 28-208 (249)
208 smart00382 AAA ATPases associa 98.2 1.6E-06 3.5E-11 80.4 5.1 128 331-476 4-144 (148)
209 PF00308 Bac_DnaA: Bacterial d 98.2 6.2E-06 1.4E-10 84.3 9.5 129 331-488 36-174 (219)
210 PRK09112 DNA polymerase III su 98.1 1.5E-05 3.2E-10 87.1 11.9 148 296-484 23-204 (351)
211 TIGR02653 Lon_rel_chp conserve 98.1 0.00012 2.7E-09 83.7 18.7 136 283-445 179-318 (675)
212 PRK04132 replication factor C 98.1 1.7E-05 3.7E-10 94.6 12.3 114 330-476 565-686 (846)
213 COG0470 HolB ATPase involved i 98.1 7.1E-06 1.5E-10 88.8 8.2 141 297-476 2-165 (325)
214 KOG0729 26S proteasome regulat 98.0 6.2E-06 1.3E-10 83.2 5.8 133 331-498 213-362 (435)
215 PRK07471 DNA polymerase III su 98.0 2.2E-05 4.8E-10 86.2 10.4 46 296-353 19-65 (365)
216 KOG0726 26S proteasome regulat 98.0 2.8E-06 6E-11 86.8 3.0 135 331-499 221-371 (440)
217 PF13177 DNA_pol3_delta2: DNA 98.0 3.8E-05 8.2E-10 74.7 10.0 134 300-476 1-158 (162)
218 KOG0651 26S proteasome regulat 98.0 9.1E-06 2E-10 84.0 5.6 123 331-483 168-306 (388)
219 PRK15455 PrkA family serine pr 97.9 1.1E-05 2.5E-10 90.9 6.4 100 386-495 248-348 (644)
220 PRK05564 DNA polymerase III su 97.9 6.3E-05 1.4E-09 81.3 11.9 143 296-483 4-155 (313)
221 TIGR00678 holB DNA polymerase 97.9 6E-05 1.3E-09 75.1 10.7 124 331-483 16-158 (188)
222 PRK08058 DNA polymerase III su 97.9 4.6E-05 9.9E-10 82.9 10.6 136 297-476 6-166 (329)
223 KOG0741 AAA+-type ATPase [Post 97.9 6.5E-06 1.4E-10 90.3 3.4 125 332-485 259-406 (744)
224 PF13335 Mg_chelatase_2: Magne 97.9 6.1E-05 1.3E-09 66.2 8.3 68 545-634 28-95 (96)
225 PRK07399 DNA polymerase III su 97.8 0.00015 3.2E-09 78.1 12.5 148 295-483 3-185 (314)
226 KOG0730 AAA+-type ATPase [Post 97.8 9.4E-05 2E-09 83.8 11.0 133 331-495 220-366 (693)
227 PRK12377 putative replication 97.7 9.9E-06 2.1E-10 84.0 1.4 114 331-470 103-222 (248)
228 COG5245 DYN1 Dynein, heavy cha 97.7 0.00021 4.6E-09 86.2 11.7 209 331-618 1496-1719(3164)
229 KOG2545 Conserved membrane pro 97.7 0.007 1.5E-07 65.1 21.4 326 209-636 201-536 (543)
230 PRK08116 hypothetical protein; 97.6 9E-06 1.9E-10 85.7 -0.9 99 331-447 116-222 (268)
231 PF08298 AAA_PrkA: PrkA AAA do 97.6 6E-05 1.3E-09 80.6 5.3 99 386-494 226-325 (358)
232 PRK06526 transposase; Provisio 97.6 1.1E-05 2.4E-10 84.2 -0.6 103 331-450 100-205 (254)
233 COG0593 DnaA ATPase involved i 97.6 0.0017 3.6E-08 71.6 15.6 55 567-638 262-316 (408)
234 KOG0990 Replication factor C, 97.6 4.3E-05 9.2E-10 79.7 3.0 132 331-494 64-204 (360)
235 PRK05707 DNA polymerase III su 97.6 0.00022 4.8E-09 77.3 8.7 117 331-476 24-162 (328)
236 PRK08181 transposase; Validate 97.5 1.9E-05 4.1E-10 82.9 -0.0 117 331-470 108-230 (269)
237 KOG1808 AAA ATPase containing 97.5 5.2E-05 1.1E-09 95.3 3.8 143 330-481 441-588 (1856)
238 COG2607 Predicted ATPase (AAA+ 97.5 0.00043 9.3E-09 69.6 9.2 167 297-494 61-240 (287)
239 KOG0732 AAA+-type ATPase conta 97.5 0.00025 5.4E-09 85.0 8.6 162 295-497 264-451 (1080)
240 COG0542 clpA ATP-binding subun 97.5 0.001 2.2E-08 78.3 13.3 180 331-587 193-396 (786)
241 TIGR00602 rad24 checkpoint pro 97.5 0.0016 3.6E-08 76.0 14.6 52 297-355 85-136 (637)
242 PRK07952 DNA replication prote 97.5 0.00014 3.1E-09 75.2 5.3 112 331-470 101-221 (244)
243 PF00910 RNA_helicase: RNA hel 97.5 0.00014 3.1E-09 65.5 4.6 99 332-444 1-106 (107)
244 COG1484 DnaC DNA replication p 97.4 4.6E-05 1E-09 79.6 0.6 129 298-450 81-213 (254)
245 PRK09183 transposase/IS protei 97.4 2.4E-05 5.2E-10 82.1 -1.6 99 331-450 104-210 (259)
246 PRK06835 DNA replication prote 97.4 5E-05 1.1E-09 82.1 0.4 115 331-470 185-305 (329)
247 PF01695 IstB_IS21: IstB-like 97.3 1.1E-05 2.4E-10 79.7 -4.7 117 331-470 49-171 (178)
248 COG1618 Predicted nucleotide k 97.3 0.0028 6E-08 60.2 11.2 26 330-355 6-31 (179)
249 KOG1514 Origin recognition com 97.3 0.015 3.3E-07 66.9 19.1 238 291-642 391-662 (767)
250 PRK08769 DNA polymerase III su 97.3 0.0015 3.2E-08 70.3 10.6 55 394-476 114-169 (319)
251 KOG2680 DNA helicase TIP49, TB 97.2 0.0058 1.3E-07 63.3 13.4 142 394-638 289-432 (454)
252 KOG0736 Peroxisome assembly fa 97.2 0.0023 4.9E-08 73.9 11.4 148 327-496 429-579 (953)
253 PRK06871 DNA polymerase III su 97.2 0.0035 7.6E-08 67.7 12.4 117 331-478 26-165 (325)
254 PRK06921 hypothetical protein; 97.2 9E-05 2E-09 78.0 0.3 98 331-449 119-228 (266)
255 PF05272 VirE: Virulence-assoc 97.2 0.00026 5.6E-09 71.0 3.2 97 329-446 52-150 (198)
256 KOG2035 Replication factor C, 97.1 0.0016 3.6E-08 66.7 8.6 72 395-494 129-200 (351)
257 PF13148 DUF3987: Protein of u 97.1 0.0015 3.2E-08 72.5 9.2 75 568-642 287-367 (378)
258 PF13654 AAA_32: AAA domain; P 97.1 0.0011 2.3E-08 75.9 7.6 173 383-634 322-505 (509)
259 PF03266 NTPase_1: NTPase; In 97.0 0.0015 3.4E-08 63.7 6.8 23 331-353 1-23 (168)
260 PRK06964 DNA polymerase III su 97.0 0.0029 6.3E-08 68.8 9.2 57 394-478 133-190 (342)
261 KOG2170 ATPase of the AAA+ sup 96.9 0.00053 1.1E-08 71.1 2.8 124 287-419 73-204 (344)
262 PHA02774 E1; Provisional 96.9 0.0086 1.9E-07 68.3 12.5 98 331-447 436-534 (613)
263 PRK07993 DNA polymerase III su 96.9 0.0057 1.2E-07 66.6 10.7 62 393-482 108-169 (334)
264 PRK08699 DNA polymerase III su 96.9 0.0022 4.8E-08 69.4 7.2 58 392-476 112-169 (325)
265 PRK06090 DNA polymerase III su 96.8 0.0079 1.7E-07 64.8 10.8 121 331-482 27-169 (319)
266 PF13401 AAA_22: AAA domain; P 96.6 0.00038 8.3E-09 64.5 -0.7 23 331-353 6-28 (131)
267 PHA02624 large T antigen; Prov 96.6 0.0047 1E-07 70.7 7.3 113 331-478 433-561 (647)
268 PF06309 Torsin: Torsin; Inte 96.5 0.0039 8.5E-08 57.2 5.1 62 287-353 16-77 (127)
269 COG3854 SpoIIIAA ncharacterize 96.5 0.0049 1.1E-07 61.8 6.1 29 328-356 136-164 (308)
270 PRK05917 DNA polymerase III su 96.5 0.015 3.2E-07 61.6 9.9 117 331-474 21-150 (290)
271 KOG1969 DNA replication checkp 96.4 0.0029 6.3E-08 72.7 4.7 82 331-418 328-412 (877)
272 TIGR01613 primase_Cterm phage/ 96.4 0.028 6E-07 60.5 12.0 123 331-476 78-201 (304)
273 PF05621 TniB: Bacterial TniB 96.4 0.048 1E-06 57.6 12.8 59 289-355 27-87 (302)
274 PF03969 AFG1_ATPase: AFG1-lik 96.2 0.0017 3.6E-08 71.3 1.2 25 331-355 64-88 (362)
275 PRK13695 putative NTPase; Prov 96.0 0.019 4.2E-07 56.3 7.6 23 331-353 2-24 (174)
276 COG4930 Predicted ATP-dependen 95.9 0.097 2.1E-06 56.4 12.4 116 284-423 189-309 (683)
277 PF13207 AAA_17: AAA domain; P 95.8 0.0071 1.5E-07 55.2 3.1 25 332-356 2-26 (121)
278 PF03215 Rad17: Rad17 cell cyc 95.7 0.12 2.7E-06 59.4 13.4 27 331-357 47-73 (519)
279 PF13671 AAA_33: AAA domain; P 95.7 0.0078 1.7E-07 56.6 3.2 23 332-354 2-24 (143)
280 KOG0735 AAA+-type ATPase [Post 95.7 0.011 2.5E-07 67.8 4.8 139 331-495 433-588 (952)
281 PF13604 AAA_30: AAA domain; P 95.7 0.012 2.6E-07 59.1 4.6 89 331-419 20-119 (196)
282 KOG3595 Dyneins, heavy chain [ 95.6 0.071 1.5E-06 68.7 12.2 149 331-496 129-289 (1395)
283 PF01443 Viral_helicase1: Vira 95.6 0.026 5.6E-07 57.9 6.6 22 332-353 1-22 (234)
284 PRK14532 adenylate kinase; Pro 95.5 0.013 2.9E-07 58.1 4.2 30 331-360 2-31 (188)
285 PRK04296 thymidine kinase; Pro 95.5 0.023 5E-07 56.7 5.9 22 332-353 5-26 (190)
286 PRK10536 hypothetical protein; 95.5 0.033 7.2E-07 57.7 7.1 26 393-418 176-201 (262)
287 PF00519 PPV_E1_C: Papillomavi 95.5 0.04 8.7E-07 59.7 7.8 95 331-447 264-362 (432)
288 PRK13947 shikimate kinase; Pro 95.4 0.015 3.3E-07 56.6 4.1 31 331-361 3-33 (171)
289 KOG3347 Predicted nucleotide k 95.4 0.015 3.3E-07 54.5 3.6 31 330-360 8-38 (176)
290 PRK08118 topology modulation p 95.4 0.015 3.2E-07 56.9 3.7 28 331-358 3-30 (167)
291 PF13173 AAA_14: AAA domain 95.4 0.017 3.6E-07 53.7 3.9 80 331-419 4-86 (128)
292 COG0563 Adk Adenylate kinase a 95.3 0.015 3.3E-07 57.3 3.7 29 331-359 2-30 (178)
293 PHA00729 NTP-binding motif con 95.2 0.014 3E-07 59.4 3.0 24 331-354 19-42 (226)
294 cd00464 SK Shikimate kinase (S 95.1 0.021 4.5E-07 54.4 4.0 28 331-358 1-28 (154)
295 PRK03839 putative kinase; Prov 95.1 0.02 4.4E-07 56.4 4.0 29 331-359 2-30 (180)
296 TIGR02768 TraA_Ti Ti-type conj 95.1 0.023 4.9E-07 68.5 5.0 85 331-418 370-464 (744)
297 PF09848 DUF2075: Uncharacteri 95.1 0.012 2.5E-07 64.8 2.4 23 331-353 3-25 (352)
298 PRK14530 adenylate kinase; Pro 95.1 0.021 4.6E-07 58.1 4.1 30 331-360 5-34 (215)
299 PRK00625 shikimate kinase; Pro 95.1 0.022 4.9E-07 55.9 4.0 29 331-359 2-30 (173)
300 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.024 5.2E-07 55.9 4.2 26 332-357 2-27 (183)
301 PRK07132 DNA polymerase III su 95.0 0.17 3.7E-06 54.1 10.7 56 393-476 90-146 (299)
302 PRK00131 aroK shikimate kinase 95.0 0.024 5.2E-07 55.1 4.0 28 331-358 6-33 (175)
303 TIGR01447 recD exodeoxyribonuc 95.0 0.038 8.3E-07 64.6 6.2 25 395-419 261-285 (586)
304 PRK07261 topology modulation p 94.9 0.027 6E-07 55.1 4.1 25 331-355 2-26 (171)
305 PTZ00301 uridine kinase; Provi 94.9 0.12 2.7E-06 52.3 8.9 23 331-353 5-27 (210)
306 PTZ00088 adenylate kinase 1; P 94.9 0.032 6.9E-07 57.4 4.6 32 330-361 7-38 (229)
307 PRK13949 shikimate kinase; Pro 94.8 0.028 6.1E-07 55.0 4.0 28 331-358 3-30 (169)
308 cd01131 PilT Pilus retraction 94.8 0.088 1.9E-06 52.9 7.6 24 331-354 3-26 (198)
309 TIGR00235 udk uridine kinase. 94.8 0.17 3.7E-06 51.1 9.7 25 331-355 8-32 (207)
310 PF13191 AAA_16: AAA ATPase do 94.7 0.03 6.6E-07 54.9 4.1 24 331-354 26-49 (185)
311 PF13245 AAA_19: Part of AAA d 94.7 0.045 9.8E-07 45.9 4.4 22 332-353 13-35 (76)
312 PRK05818 DNA polymerase III su 94.7 0.1 2.3E-06 54.2 7.9 52 394-472 89-141 (261)
313 PF13238 AAA_18: AAA domain; P 94.7 0.023 5E-07 52.0 2.8 22 332-353 1-22 (129)
314 cd02019 NK Nucleoside/nucleoti 94.7 0.029 6.3E-07 46.0 3.1 22 332-353 2-23 (69)
315 PRK14531 adenylate kinase; Pro 94.7 0.033 7.1E-07 55.2 4.0 29 331-359 4-32 (183)
316 cd01428 ADK Adenylate kinase ( 94.6 0.035 7.6E-07 55.2 4.2 28 331-358 1-28 (194)
317 PF05970 PIF1: PIF1-like helic 94.6 0.033 7.2E-07 61.5 4.4 88 331-418 24-127 (364)
318 TIGR01448 recD_rel helicase, p 94.6 0.034 7.4E-07 66.8 4.7 84 331-418 340-441 (720)
319 PF13086 AAA_11: AAA domain; P 94.5 0.036 7.8E-07 56.3 4.0 21 332-352 20-40 (236)
320 TIGR01360 aden_kin_iso1 adenyl 94.5 0.033 7.2E-07 55.0 3.6 29 331-359 5-33 (188)
321 COG3267 ExeA Type II secretory 94.5 0.23 4.9E-06 51.1 9.5 88 331-418 53-156 (269)
322 PRK13889 conjugal transfer rel 94.5 0.041 8.9E-07 67.6 5.0 85 331-418 364-458 (988)
323 PRK06762 hypothetical protein; 94.4 0.041 8.9E-07 53.3 4.0 27 331-357 4-30 (166)
324 PRK10875 recD exonuclease V su 94.4 0.084 1.8E-06 62.0 7.1 37 301-352 154-190 (615)
325 PRK06217 hypothetical protein; 94.3 0.047 1E-06 54.0 4.3 28 331-358 3-30 (183)
326 PRK05057 aroK shikimate kinase 94.2 0.052 1.1E-06 53.2 4.3 29 331-359 6-34 (172)
327 PRK10078 ribose 1,5-bisphospho 94.2 0.045 9.7E-07 54.4 3.8 30 331-360 4-33 (186)
328 PRK14709 hypothetical protein; 94.2 0.6 1.3E-05 53.3 13.3 124 331-476 207-331 (469)
329 cd02021 GntK Gluconate kinase 94.2 0.047 1E-06 51.9 3.8 24 332-355 2-25 (150)
330 PRK14528 adenylate kinase; Pro 94.1 0.049 1.1E-06 54.1 4.0 30 331-360 3-32 (186)
331 PF12780 AAA_8: P-loop contain 94.1 0.079 1.7E-06 55.8 5.7 29 331-359 33-61 (268)
332 TIGR01313 therm_gnt_kin carboh 94.1 0.044 9.5E-07 53.0 3.5 24 332-355 1-24 (163)
333 PRK14526 adenylate kinase; Pro 94.1 0.05 1.1E-06 55.2 4.1 31 331-361 2-32 (211)
334 PRK13826 Dtr system oriT relax 94.1 0.073 1.6E-06 65.9 6.0 86 331-419 399-494 (1102)
335 PRK02496 adk adenylate kinase; 94.0 0.05 1.1E-06 53.8 3.8 30 331-360 3-32 (184)
336 TIGR01351 adk adenylate kinase 94.0 0.054 1.2E-06 54.9 4.1 29 332-360 2-30 (210)
337 cd01130 VirB11-like_ATPase Typ 94.0 0.091 2E-06 52.2 5.6 25 331-355 27-51 (186)
338 cd00227 CPT Chloramphenicol (C 94.0 0.046 1E-06 53.6 3.4 26 331-356 4-29 (175)
339 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.076 1.6E-06 51.0 4.8 89 331-419 27-125 (157)
340 COG0703 AroK Shikimate kinase 93.9 0.053 1.1E-06 52.7 3.6 29 331-359 4-32 (172)
341 COG4619 ABC-type uncharacteriz 93.9 0.071 1.5E-06 51.2 4.3 25 331-355 31-55 (223)
342 PRK13900 type IV secretion sys 93.9 0.084 1.8E-06 57.4 5.4 25 331-355 162-186 (332)
343 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.8 0.078 1.7E-06 50.3 4.5 83 331-419 28-115 (144)
344 PLN02200 adenylate kinase fami 93.8 0.063 1.4E-06 55.5 4.2 31 330-360 44-74 (234)
345 PRK05439 pantothenate kinase; 93.8 0.1 2.3E-06 55.9 5.9 80 266-354 26-111 (311)
346 cd02024 NRK1 Nicotinamide ribo 93.8 0.24 5.2E-06 49.2 8.1 24 332-355 2-25 (187)
347 PF06048 DUF927: Domain of unk 93.8 0.057 1.2E-06 57.6 3.9 64 331-410 195-259 (286)
348 cd02020 CMPK Cytidine monophos 93.7 0.067 1.4E-06 50.4 3.9 29 332-360 2-30 (147)
349 COG1116 TauB ABC-type nitrate/ 93.7 0.071 1.5E-06 54.6 4.2 24 332-355 32-55 (248)
350 cd03222 ABC_RNaseL_inhibitor T 93.6 0.059 1.3E-06 53.1 3.4 83 331-419 27-116 (177)
351 PRK00279 adk adenylate kinase; 93.6 0.074 1.6E-06 54.1 4.2 30 331-360 2-31 (215)
352 PRK12608 transcription termina 93.6 0.16 3.4E-06 55.6 6.8 23 331-353 135-157 (380)
353 PF08477 Miro: Miro-like prote 93.5 0.061 1.3E-06 48.7 3.2 24 331-354 1-24 (119)
354 cd01120 RecA-like_NTPases RecA 93.5 0.047 1E-06 52.0 2.4 24 331-354 1-24 (165)
355 TIGR01420 pilT_fam pilus retra 93.5 0.2 4.3E-06 54.9 7.6 24 331-354 124-147 (343)
356 PF05729 NACHT: NACHT domain 93.4 0.052 1.1E-06 52.0 2.7 23 332-354 3-25 (166)
357 TIGR02322 phosphon_PhnN phosph 93.4 0.064 1.4E-06 52.7 3.3 24 331-354 3-26 (179)
358 TIGR00150 HI0065_YjeE ATPase, 93.4 0.12 2.6E-06 48.3 4.9 25 331-355 24-48 (133)
359 PLN02459 probable adenylate ki 93.4 0.096 2.1E-06 54.6 4.7 32 330-361 30-61 (261)
360 PRK08233 hypothetical protein; 93.4 0.066 1.4E-06 52.5 3.4 25 331-355 5-29 (182)
361 PRK08939 primosomal protein Dn 93.3 0.056 1.2E-06 58.1 2.8 24 331-354 158-181 (306)
362 PRK03731 aroL shikimate kinase 93.3 0.093 2E-06 51.1 4.1 29 331-359 4-32 (171)
363 COG1936 Predicted nucleotide k 93.2 0.089 1.9E-06 50.9 3.7 21 331-351 2-22 (180)
364 COG1102 Cmk Cytidylate kinase 93.1 0.089 1.9E-06 50.2 3.5 30 332-361 3-32 (179)
365 PHA02530 pseT polynucleotide k 93.1 0.092 2E-06 56.2 4.2 29 331-359 4-32 (300)
366 PF13555 AAA_29: P-loop contai 93.1 0.092 2E-06 42.1 3.0 23 331-353 25-47 (62)
367 TIGR01618 phage_P_loop phage n 93.1 0.061 1.3E-06 54.8 2.5 22 329-350 12-33 (220)
368 PLN02674 adenylate kinase 93.1 0.093 2E-06 54.3 3.9 31 331-361 33-63 (244)
369 PRK14529 adenylate kinase; Pro 93.0 0.075 1.6E-06 54.3 3.2 27 331-357 2-28 (223)
370 KOG2227 Pre-initiation complex 93.0 1.2 2.6E-05 49.6 12.5 39 701-739 448-490 (529)
371 PRK14527 adenylate kinase; Pro 93.0 0.074 1.6E-06 53.0 3.1 25 331-355 8-32 (191)
372 PRK13948 shikimate kinase; Pro 93.0 0.1 2.3E-06 51.6 4.0 28 331-358 12-39 (182)
373 PRK13946 shikimate kinase; Pro 92.9 0.11 2.5E-06 51.4 4.2 30 331-360 12-41 (184)
374 COG1120 FepC ABC-type cobalami 92.8 0.1 2.2E-06 54.3 3.8 25 331-355 30-54 (258)
375 PRK13851 type IV secretion sys 92.8 0.15 3.1E-06 55.8 5.2 25 331-355 164-188 (344)
376 COG1126 GlnQ ABC-type polar am 92.7 0.027 5.8E-07 56.4 -0.6 22 331-352 30-51 (240)
377 TIGR00554 panK_bact pantothena 92.7 0.19 4E-06 53.5 5.7 24 331-354 64-87 (290)
378 TIGR03263 guanyl_kin guanylate 92.7 0.083 1.8E-06 51.9 2.9 25 331-355 3-27 (180)
379 cd00071 GMPK Guanosine monopho 92.7 0.099 2.1E-06 49.2 3.3 25 332-356 2-26 (137)
380 PRK07276 DNA polymerase III su 92.6 0.68 1.5E-05 49.3 9.8 56 393-476 104-160 (290)
381 PRK00300 gmk guanylate kinase; 92.5 0.1 2.2E-06 52.5 3.3 24 331-354 7-30 (205)
382 PRK12339 2-phosphoglycerate ki 92.4 0.14 3E-06 51.4 4.1 30 331-360 5-34 (197)
383 PRK04040 adenylate kinase; Pro 92.4 0.13 2.9E-06 51.1 3.9 24 331-354 4-27 (188)
384 cd02027 APSK Adenosine 5'-phos 92.2 0.1 2.2E-06 49.9 2.8 22 332-353 2-23 (149)
385 PRK01184 hypothetical protein; 92.2 0.15 3.2E-06 50.4 4.0 26 331-357 3-28 (184)
386 COG3839 MalK ABC-type sugar tr 92.1 0.12 2.7E-06 55.8 3.5 25 331-355 31-55 (338)
387 KOG0060 Long-chain acyl-CoA tr 92.1 0.1 2.3E-06 59.1 3.0 28 328-355 460-487 (659)
388 COG4088 Predicted nucleotide k 92.1 0.096 2.1E-06 51.9 2.4 25 331-355 3-27 (261)
389 PF13521 AAA_28: AAA domain; P 92.0 0.11 2.4E-06 50.2 2.8 21 332-352 2-22 (163)
390 COG1485 Predicted ATPase [Gene 91.9 0.12 2.7E-06 55.4 3.2 99 331-447 67-172 (367)
391 TIGR02788 VirB11 P-type DNA tr 91.9 0.21 4.6E-06 53.8 5.1 25 331-355 146-170 (308)
392 PF13479 AAA_24: AAA domain 91.9 0.12 2.7E-06 52.5 3.1 27 330-360 4-30 (213)
393 TIGR03574 selen_PSTK L-seryl-t 91.8 0.11 2.5E-06 54.0 2.7 23 332-354 2-24 (249)
394 PF01926 MMR_HSR1: 50S ribosom 91.8 0.12 2.6E-06 46.8 2.5 21 331-351 1-21 (116)
395 PRK03846 adenylylsulfate kinas 91.8 0.1 2.2E-06 52.4 2.2 24 331-354 26-49 (198)
396 TIGR02782 TrbB_P P-type conjug 91.8 0.25 5.3E-06 53.0 5.3 24 331-354 134-157 (299)
397 PRK04182 cytidylate kinase; Pr 91.7 0.18 3.9E-06 49.3 4.0 28 331-358 2-29 (180)
398 PF00406 ADK: Adenylate kinase 91.7 0.12 2.5E-06 49.4 2.6 24 334-357 1-24 (151)
399 cd04177 RSR1 RSR1 subgroup. R 91.6 0.14 3.1E-06 49.4 3.1 22 330-351 2-23 (168)
400 TIGR02237 recomb_radB DNA repa 91.6 0.17 3.7E-06 51.0 3.7 22 331-352 14-35 (209)
401 cd02023 UMPK Uridine monophosp 91.6 0.14 3.1E-06 51.1 3.2 22 332-353 2-23 (198)
402 TIGR02173 cyt_kin_arch cytidyl 91.6 0.18 3.9E-06 48.8 3.7 28 332-359 3-30 (171)
403 PRK05541 adenylylsulfate kinas 91.6 0.13 2.8E-06 50.4 2.8 24 331-354 9-32 (176)
404 PRK06547 hypothetical protein; 91.5 0.19 4E-06 49.4 3.8 24 331-354 17-40 (172)
405 COG4178 ABC-type uncharacteriz 91.5 0.12 2.7E-06 59.6 2.9 26 331-356 421-446 (604)
406 PRK09825 idnK D-gluconate kina 91.4 0.17 3.7E-06 49.8 3.4 25 331-355 5-29 (176)
407 KOG0064 Peroxisomal long-chain 91.4 0.15 3.2E-06 57.2 3.1 26 330-355 509-534 (728)
408 PF00437 T2SE: Type II/IV secr 91.3 0.13 2.7E-06 54.3 2.5 26 331-356 129-154 (270)
409 PF00005 ABC_tran: ABC transpo 91.3 0.086 1.9E-06 49.1 1.1 23 331-353 13-35 (137)
410 PF01637 Arch_ATPase: Archaeal 91.3 0.22 4.8E-06 50.4 4.3 25 331-355 22-46 (234)
411 PRK12678 transcription termina 91.2 0.4 8.7E-06 55.0 6.3 32 202-235 312-345 (672)
412 cd04119 RJL RJL (RabJ-Like) su 91.1 0.17 3.7E-06 48.3 3.0 21 331-351 2-22 (168)
413 PRK13808 adenylate kinase; Pro 91.1 0.21 4.5E-06 54.1 3.9 30 331-360 2-31 (333)
414 PRK05480 uridine/cytidine kina 91.1 0.19 4.2E-06 50.7 3.5 24 331-354 8-31 (209)
415 PRK13833 conjugal transfer pro 91.0 0.32 7E-06 52.6 5.2 23 331-353 146-168 (323)
416 cd04124 RabL2 RabL2 subfamily. 91.0 0.18 3.9E-06 48.4 3.0 22 330-351 1-22 (161)
417 cd04137 RheB Rheb (Ras Homolog 90.9 0.18 3.9E-06 49.2 3.1 21 331-351 3-23 (180)
418 COG3842 PotA ABC-type spermidi 90.9 0.2 4.4E-06 54.4 3.6 23 332-354 34-56 (352)
419 TIGR00231 small_GTP small GTP- 90.9 0.19 4E-06 46.9 3.0 23 330-352 2-24 (161)
420 smart00175 RAB Rab subfamily o 90.9 0.17 3.8E-06 48.2 2.8 21 331-351 2-22 (164)
421 cd03281 ABC_MSH5_euk MutS5 hom 90.8 0.42 9.1E-06 48.6 5.7 21 331-351 31-51 (213)
422 PRK13709 conjugal transfer nic 90.8 0.4 8.6E-06 62.3 6.6 89 331-419 986-1088(1747)
423 cd01124 KaiC KaiC is a circadi 90.8 0.18 4E-06 49.6 3.0 20 332-351 2-21 (187)
424 cd00154 Rab Rab family. Rab G 90.8 0.2 4.2E-06 47.1 3.0 22 331-352 2-23 (159)
425 PRK08356 hypothetical protein; 90.7 0.27 5.9E-06 49.1 4.2 21 331-351 7-27 (195)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.7 0.18 3.8E-06 51.3 2.9 24 331-354 32-55 (218)
427 PF00485 PRK: Phosphoribulokin 90.7 0.16 3.5E-06 50.7 2.5 24 332-355 2-25 (194)
428 cd04155 Arl3 Arl3 subfamily. 90.7 0.19 4E-06 48.7 2.8 24 329-352 14-37 (173)
429 PRK00889 adenylylsulfate kinas 90.6 0.19 4E-06 49.3 2.8 24 331-354 6-29 (175)
430 cd00157 Rho Rho (Ras homology) 90.5 0.21 4.5E-06 48.1 3.0 22 330-351 1-22 (171)
431 PF03193 DUF258: Protein of un 90.5 0.36 7.7E-06 46.7 4.5 23 331-353 37-59 (161)
432 cd01878 HflX HflX subfamily. 90.5 0.21 4.5E-06 50.1 3.1 24 329-352 41-64 (204)
433 COG4525 TauB ABC-type taurine 90.5 0.37 8E-06 47.6 4.6 25 331-355 33-57 (259)
434 cd04136 Rap_like Rap-like subf 90.5 0.22 4.7E-06 47.5 3.1 22 330-351 2-23 (163)
435 PLN02165 adenylate isopentenyl 90.5 0.26 5.7E-06 53.1 4.0 29 331-359 45-73 (334)
436 smart00487 DEXDc DEAD-like hel 90.5 0.21 4.6E-06 48.7 3.1 24 331-354 26-50 (201)
437 cd01862 Rab7 Rab7 subfamily. 90.5 0.2 4.2E-06 48.3 2.8 21 331-351 2-22 (172)
438 cd04113 Rab4 Rab4 subfamily. 90.5 0.21 4.6E-06 47.6 3.0 21 331-351 2-22 (161)
439 PRK14737 gmk guanylate kinase; 90.4 0.23 5E-06 49.3 3.3 25 331-355 6-30 (186)
440 cd04138 H_N_K_Ras_like H-Ras/N 90.3 0.23 5E-06 47.1 3.1 21 331-351 3-23 (162)
441 cd00820 PEPCK_HprK Phosphoenol 90.3 0.22 4.7E-06 44.7 2.7 20 331-350 17-36 (107)
442 cd01867 Rab8_Rab10_Rab13_like 90.3 0.22 4.8E-06 48.0 3.0 22 330-351 4-25 (167)
443 cd03264 ABC_drug_resistance_li 90.3 0.21 4.5E-06 50.5 2.9 24 331-354 27-50 (211)
444 KOG0066 eIF2-interacting prote 90.3 0.98 2.1E-05 49.6 8.0 27 329-355 613-639 (807)
445 cd03292 ABC_FtsE_transporter F 90.3 0.21 4.6E-06 50.5 3.0 24 331-354 29-52 (214)
446 cd03228 ABCC_MRP_Like The MRP 90.3 0.26 5.6E-06 48.1 3.4 25 331-355 30-54 (171)
447 cd03301 ABC_MalK_N The N-termi 90.2 0.21 4.6E-06 50.5 2.9 24 331-354 28-51 (213)
448 cd03258 ABC_MetN_methionine_tr 90.2 0.21 4.5E-06 51.3 2.9 24 331-354 33-56 (233)
449 cd04160 Arfrp1 Arfrp1 subfamil 90.2 0.22 4.8E-06 47.8 2.9 22 331-352 1-22 (167)
450 cd03269 ABC_putative_ATPase Th 90.2 0.22 4.7E-06 50.4 2.9 24 331-354 28-51 (210)
451 TIGR03608 L_ocin_972_ABC putat 90.2 0.22 4.8E-06 50.0 3.0 24 331-354 26-49 (206)
452 TIGR00017 cmk cytidylate kinas 90.1 0.31 6.8E-06 49.7 4.0 30 331-360 4-33 (217)
453 PRK08154 anaerobic benzoate ca 90.1 0.67 1.5E-05 50.0 6.8 28 331-358 135-162 (309)
454 PRK13894 conjugal transfer ATP 90.1 0.44 9.5E-06 51.6 5.3 23 331-353 150-172 (319)
455 TIGR02315 ABC_phnC phosphonate 90.0 0.22 4.7E-06 51.5 2.9 24 331-354 30-53 (243)
456 cd03216 ABC_Carb_Monos_I This 90.0 0.23 5.1E-06 48.1 2.9 25 331-355 28-52 (163)
457 PF01057 Parvo_NS1: Parvovirus 90.0 0.94 2E-05 47.7 7.5 94 331-446 115-209 (271)
458 PRK13541 cytochrome c biogenes 90.0 0.24 5.1E-06 49.5 3.0 24 331-354 28-51 (195)
459 cd04156 ARLTS1 ARLTS1 subfamil 90.0 0.22 4.9E-06 47.4 2.7 21 331-351 1-21 (160)
460 PRK13975 thymidylate kinase; P 89.9 0.26 5.6E-06 49.1 3.2 25 331-355 4-28 (196)
461 PRK05800 cobU adenosylcobinami 89.9 0.36 7.8E-06 47.3 4.1 25 331-355 3-27 (170)
462 cd03262 ABC_HisP_GlnQ_permease 89.9 0.23 5.1E-06 50.1 2.9 24 331-354 28-51 (213)
463 PRK14712 conjugal transfer nic 89.8 0.4 8.6E-06 61.6 5.4 89 331-419 854-956 (1623)
464 cd04101 RabL4 RabL4 (Rab-like4 89.8 0.25 5.5E-06 47.2 3.0 22 330-351 1-22 (164)
465 TIGR00960 3a0501s02 Type II (G 89.8 0.23 5.1E-06 50.3 2.9 24 331-354 31-54 (216)
466 cd01860 Rab5_related Rab5-rela 89.8 0.26 5.6E-06 47.1 3.0 23 330-352 2-24 (163)
467 cd03246 ABCC_Protease_Secretio 89.8 0.28 6E-06 48.0 3.2 25 331-355 30-54 (173)
468 smart00173 RAS Ras subfamily o 89.8 0.26 5.7E-06 47.1 3.0 21 331-351 2-22 (164)
469 cd03247 ABCC_cytochrome_bd The 89.8 0.26 5.6E-06 48.5 3.0 25 331-355 30-54 (178)
470 TIGR02673 FtsE cell division A 89.8 0.24 5.2E-06 50.1 2.9 24 331-354 30-53 (214)
471 cd03226 ABC_cobalt_CbiO_domain 89.7 0.25 5.3E-06 49.8 2.9 24 331-354 28-51 (205)
472 PRK06581 DNA polymerase III su 89.7 1.4 3E-05 45.3 8.1 62 393-483 89-151 (263)
473 TIGR02858 spore_III_AA stage I 89.7 0.25 5.3E-06 52.2 2.9 25 331-355 113-137 (270)
474 COG3378 Phage associated DNA p 89.7 0.81 1.8E-05 52.4 7.2 29 331-359 232-260 (517)
475 cd03266 ABC_NatA_sodium_export 89.6 0.24 5.3E-06 50.2 2.8 24 331-354 33-56 (218)
476 cd01394 radB RadB. The archaea 89.6 0.41 8.9E-06 48.6 4.5 22 331-352 21-42 (218)
477 cd04117 Rab15 Rab15 subfamily. 89.6 0.26 5.6E-06 47.3 2.8 20 331-350 2-21 (161)
478 cd00876 Ras Ras family. The R 89.6 0.27 5.9E-06 46.5 3.0 21 331-351 1-21 (160)
479 PRK14738 gmk guanylate kinase; 89.5 0.28 6.2E-06 49.5 3.2 24 331-354 15-38 (206)
480 cd03263 ABC_subfamily_A The AB 89.5 0.26 5.6E-06 50.1 2.9 24 331-354 30-53 (220)
481 TIGR01166 cbiO cobalt transpor 89.5 0.26 5.6E-06 48.9 2.8 24 331-354 20-43 (190)
482 cd04157 Arl6 Arl6 subfamily. 89.5 0.24 5.2E-06 47.2 2.5 22 331-352 1-22 (162)
483 cd03230 ABC_DR_subfamily_A Thi 89.5 0.27 5.8E-06 48.1 2.9 25 331-355 28-52 (173)
484 cd03257 ABC_NikE_OppD_transpor 89.5 0.27 5.8E-06 50.3 3.0 24 331-354 33-56 (228)
485 cd04159 Arl10_like Arl10-like 89.4 0.24 5.1E-06 46.6 2.4 21 332-352 2-22 (159)
486 PRK09361 radB DNA repair and r 89.4 0.33 7.2E-06 49.6 3.6 21 331-351 25-45 (225)
487 cd04145 M_R_Ras_like M-Ras/R-R 89.4 0.3 6.4E-06 46.6 3.1 22 330-351 3-24 (164)
488 COG1072 CoaA Panthothenate kin 89.4 0.49 1.1E-05 49.3 4.7 81 266-355 22-108 (283)
489 TIGR03410 urea_trans_UrtE urea 89.4 0.26 5.5E-06 50.6 2.8 24 331-354 28-51 (230)
490 cd03261 ABC_Org_Solvent_Resist 89.4 0.26 5.7E-06 50.7 2.8 24 331-354 28-51 (235)
491 cd01868 Rab11_like Rab11-like. 89.3 0.28 6E-06 47.1 2.8 21 331-351 5-25 (165)
492 KOG0741 AAA+-type ATPase [Post 89.3 0.45 9.9E-06 53.4 4.7 28 330-357 539-566 (744)
493 PRK13540 cytochrome c biogenes 89.3 0.28 6.1E-06 49.2 3.0 24 331-354 29-52 (200)
494 TIGR02211 LolD_lipo_ex lipopro 89.3 0.27 5.9E-06 50.0 2.9 24 331-354 33-56 (221)
495 cd03224 ABC_TM1139_LivF_branch 89.3 0.26 5.6E-06 50.2 2.7 24 331-354 28-51 (222)
496 PRK05537 bifunctional sulfate 89.3 0.51 1.1E-05 55.2 5.4 52 294-355 367-418 (568)
497 cd03265 ABC_DrrA DrrA is the A 89.3 0.28 6E-06 50.0 2.9 24 331-354 28-51 (220)
498 KOG1970 Checkpoint RAD17-RFC c 89.3 0.51 1.1E-05 53.3 5.1 27 331-357 112-138 (634)
499 cd03229 ABC_Class3 This class 89.3 0.28 6.2E-06 48.2 2.9 25 331-355 28-52 (178)
500 cd02022 DPCK Dephospho-coenzym 89.3 0.43 9.3E-06 47.0 4.2 26 332-358 2-27 (179)
No 1
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-141 Score=1131.55 Aligned_cols=741 Identities=60% Similarity=0.959 Sum_probs=664.2
Q ss_pred ChHHHHHHHHHHHHHhcch----hhHHHHHHHHHcCCcEEEEechhHhhhCCChHHHHhhCHHHHHHHHHHHHHHHHHhh
Q 004502 4 SQQEFQERKREFYDFLELS----IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNI 79 (748)
Q Consensus 4 ~~~~~~~~~~~f~~Fl~~~----~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~ 79 (748)
.+..+.+..+.|.+||++. .|.+.|..|++.+..+|+||++||+.|++++|..|+.+|.++++.|++|+.++...+
T Consensus 6 ~d~~~~e~~r~f~efLd~~~D~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~ 85 (818)
T KOG0479|consen 6 EDARFRERVRDFIEFLDDEEDADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRI 85 (818)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcc
Confidence 4667788889999999863 899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeeeeeecccCCCC
Q 004502 80 DPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTG 159 (748)
Q Consensus 80 ~~~~~~~~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~~~~~~~~~~~ 159 (748)
++.|......++|+|.+.|+.+.++||.|.|.++|++|||+||||+||-|||++.+++|+|+..+.+..+.|.+.|+...
T Consensus 86 d~~~~~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~Y~D~T~~~~ 165 (818)
T KOG0479|consen 86 DDVYAKVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERDYRDATMLTT 165 (818)
T ss_pred cchhhhhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhhhcchheecc
Confidence 99888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCeeEEecCceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEEEeecCCC
Q 004502 160 VPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGK 239 (748)
Q Consensus 160 ~p~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~~ 239 (748)
+|.+.+||+++.+||++.++++.|.|.|||.|.|||+||..|+|++||+++|+|.+||||+|||||||.|+|+|++.|++
T Consensus 166 ~p~~svYPT~De~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k 245 (818)
T KOG0479|consen 166 LPTGSVYPTRDEDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGK 245 (818)
T ss_pred cccCCcCCccCCCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccceeEEEEEEeccccccccCCCCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccc
Q 004502 240 SKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKN 319 (748)
Q Consensus 240 ~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~ 319 (748)
+++..++.|++++.||||+.+.++. ...++.+++..|+++++..|+|+.|+.|+||+||||+.+|+||+|.|+||++|+
T Consensus 246 ~~g~tsg~FRTvliaNni~~l~ke~-~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~ 324 (818)
T KOG0479|consen 246 SNGNTSGTFRTVLIANNIELLSKEA-APDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKN 324 (818)
T ss_pred cCCcccceeEEEEEeccHHhhcccc-cccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceec
Confidence 8888899999999999999988876 678999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeee
Q 004502 320 LKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCI 399 (748)
Q Consensus 320 ~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~I 399 (748)
+++|+|+||||||||+|+|.++||||+|++.+.+|+++.++|++++++||||+++.|.++|+..+++|++++||.||+||
T Consensus 325 L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCI 404 (818)
T KOG0479|consen 325 LENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCI 404 (818)
T ss_pred cCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCC
Q 004502 400 DEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQ 479 (748)
Q Consensus 400 DEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~ 479 (748)
||||||+.-++.++||+||||+++|+|+|++++||+||+||||+||.+|+||.++++.+||.||.+|||||||+|+++|.
T Consensus 405 DEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~ 484 (818)
T KOG0479|consen 405 DEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDD 484 (818)
T ss_pred hhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHhHHHHHHHHHhhhccccC-CCCCCCCCCC--CCCCCCC-ccccchhhHHhhhhhccccccccCCcCCCCCHHHHH
Q 004502 480 MDPDIDRRISDHVLRMHRYRSVM-DGGEGGLDGS--SRYGRED-EVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLK 555 (748)
Q Consensus 480 ~~~~~d~~ia~~il~~~~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lr 555 (748)
.+.+.|+.|++|+|++|+++.+- ..|++.+.++ +..+.++ +...++..|.++|..||++.. .+....++.+++|
T Consensus 485 ~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k--~~~~k~lti~F~r 562 (818)
T KOG0479|consen 485 IDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAK--QQHEKLLTIDFMR 562 (818)
T ss_pred ccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhcccc--ccccceeeHHHHH
Confidence 99999999999999999987651 1233333321 1111122 233457799999999998553 3356789999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 556 KYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 556 kyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
|||.|||.+++|+|++||.++|.+.|..||+.....+..++.|+|+|+||+|||||.||||+++|++|+.+|++.|+.|+
T Consensus 563 KYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 563 KYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred HHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 99999999999999999999999999999998765544678999999999999999999999999999999999999999
Q ss_pred HHhhhhcchhhhhHHHHHH--------h---hhhhcC-------C-CCCCCCCC---------------------C----
Q 004502 636 NFAIYHKELTEMEEREQER--------Q---REQEKN-------P-RAEHPGGN---------------------D---- 671 (748)
Q Consensus 636 ~~sl~~~~~~~~~~~~~~~--------~---~~~~~~-------~-~~~~~~~~---------------------~---- 671 (748)
++++++.......+.++.. + +++++. + +....+++ +
T Consensus 643 ~fA~f~e~v~~~~~~~k~~r~~~~~~~d~e~d~~~~~d~~~~~~~~r~~~~~a~~~~~~i~~~q~~~~~~~~d~~d~m~~ 722 (818)
T KOG0479|consen 643 RFALFKEKVKPKDDKEKKKREEASDAEDEEQDESDREDEERRSEPRRSTAPGADTDERRIDRVQHALYDASEDTKDPMSL 722 (818)
T ss_pred HHHHHhhhccccccHHHHhhhhhcccccccccchhccChhhcccccccccccccCccccccccccchhhccccccccchh
Confidence 9999996555433322110 0 000000 0 00000000 0
Q ss_pred --------CCC-----------CCCCcHHHHHHHHHHHHHHhhcccCccccHHHHHHHHhccc-CCCCCHHHHHHHHHHH
Q 004502 672 --------RAD-----------HSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGM-DAHYSRAEITFLLEKL 731 (748)
Q Consensus 672 --------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l 731 (748)
..| .+.....|++.|...+..++.....+.++++.+.+.++... +++|+.+++..+|++|
T Consensus 723 ~~~~~~~~~~~~~~s~~~~~~~~a~l~~~r~~~f~~~~~~~~~~~~e~~~~l~~i~esin~~~~~~~fsa~E~~a~l~~m 802 (818)
T KOG0479|consen 723 VADFMKYLPTGVSVSVETVETTHARLSEARLELFENGLIRLFNTAREDSISLADITESINNQSGEEKFSADEIKAALEKM 802 (818)
T ss_pred hHHHhhhcCCCcccchhhccccccccchhhHHHHHHHHHhhhhhcchhhhhHHHHHHHHhccCccCCcCHHHHHHHHHHh
Confidence 001 12235677888888777777776678899999999999966 7899999999999999
Q ss_pred HhcCCEEEeCCEEEEe
Q 004502 732 QDENRVMIADGIVHMI 747 (748)
Q Consensus 732 ~~~~~~~~~~~~v~~i 747 (748)
.++|.+|+++|+||+|
T Consensus 803 ~ddN~~Mvad~~v~~I 818 (818)
T KOG0479|consen 803 QDDNKVMVADDKVFLI 818 (818)
T ss_pred hcccceeeecCeEEeC
Confidence 9999999999999997
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-122 Score=1040.11 Aligned_cols=659 Identities=41% Similarity=0.617 Sum_probs=577.0
Q ss_pred hhHHHHHHHHHcCCcEEEEechhHhhhCCChHHHHhhCHHHHHHHHHHHHHHHHHhhCcccccCCceEEEEeeCCCcccc
Q 004502 23 IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRC 102 (748)
Q Consensus 23 ~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~~~~~~~~~~~i~v~~~~~~~~~~ 102 (748)
.|.+++ .+......++.||+.|+..|+++||..|+++|.+++++|+++++++.....+.+......++++|.+.+. .
T Consensus 18 ~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 94 (682)
T COG1241 18 EYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEVDRSLKKIHVRFKNLPN--R 94 (682)
T ss_pred HHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCccccccccceEEEecCCcC--C
Confidence 455543 2333334499999999999999999999999999999999999999988888776665679999999874 4
Q ss_pred cccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeeeeeecccCCCCCCCCCCCCCCCC-CCCeeEEecC
Q 004502 103 VTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDE-HGNLLVTEYG 181 (748)
Q Consensus 103 ~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~~~~~~~~~~~~p~~~~~p~~~~-~g~~~~~~~~ 181 (748)
.++|+|++.|+||||+|+|+|+|+|.|+|++++++|+|++||+.+..++++.. +..|. .||.|+. ...+|.+.++
T Consensus 95 ~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~~~~--~~~~~--~C~~~~~~~~~~~~~~~~ 170 (682)
T COG1241 95 LSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEFR--VEPPR--ECENCGKFGKGPLKLVPR 170 (682)
T ss_pred cChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEEEEecccc--ccCCc--cCCCccccCCCceEEecC
Confidence 58999999999999999999999999999999999999999999877766532 33333 4666522 3457899999
Q ss_pred ceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEEEeecCCCCC--CcccceeEEEEEEecccc
Q 004502 182 LCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSK--GSVNGVFRTVLIANNVSL 259 (748)
Q Consensus 182 ~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~~~~--~~~~~~~~~~~~a~~i~~ 259 (748)
.|.|+|||+|+|||+|+.+|+|++||+++|+|++|||++++|||+|.||||++..+..+. ....++|++|++|++|+.
T Consensus 171 ~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~~~~~~~~~~~~a~~v~~ 250 (682)
T COG1241 171 KSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGRRKGPVFEIYLEANSVEK 250 (682)
T ss_pred cceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccccCCceEEEEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999884322 335678999999999998
Q ss_pred ccccCCCCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCC
Q 004502 260 LNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPS 339 (748)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pG 339 (748)
.... ....+++++.+.|+++++++++|++|++|+||+||||+.+|+|++|+||||+.|..++|+++||||||||+||||
T Consensus 251 ~~~~-~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPg 329 (682)
T COG1241 251 LDKR-EEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPG 329 (682)
T ss_pred ccch-hhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCc
Confidence 7765 466789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhh
Q 004502 340 VAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 340 tGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~ 419 (748)
||||||++++++.+|+++|++|++++++||||++++|+.+|+|++++|++++||+|||||||||+|+..++.+|||+|||
T Consensus 330 taKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQ 409 (682)
T COG1241 330 TAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQ 409 (682)
T ss_pred hhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhcc
Q 004502 420 QTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYR 499 (748)
Q Consensus 420 ~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~ 499 (748)
|+|+|+|+|++++||+||+|+||+||.+|+||+++++.+||+||++|||||||+|++.|.++++.|+.+|+||+..|...
T Consensus 410 QtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~ 489 (682)
T COG1241 410 QTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGE 489 (682)
T ss_pred cEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004502 500 SVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIAT 579 (748)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~ 579 (748)
..... . ...+ . ...... +.++||+||.|||+++.|.|+++|.+.|.+
T Consensus 490 ~~~~~----~--~~~~-------~------------------~~~~~~--~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~ 536 (682)
T COG1241 490 EPEET----I--SLDG-------V------------------DEVEER--DFELLRKYISYARKNVTPVLTEEAREELED 536 (682)
T ss_pred ccccc----c--cccc-------c------------------cccccC--cHHHHHHHHHHHhccCCcccCHHHHHHHHH
Confidence 32100 0 0000 0 000011 789999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcchhhhhHHHHHHhhhhh
Q 004502 580 TYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQREQE 659 (748)
Q Consensus 580 ~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~~~~~~~~~~~~~~~~~ 659 (748)
+|++||+........+++|+|+||||++||||+|||||+|++.|+++||.+|++|+..|+.+. .
T Consensus 537 ~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v----------------~ 600 (682)
T COG1241 537 YYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTV----------------A 600 (682)
T ss_pred HHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHh----------------h
Confidence 999999875321134679999999999999999999999999999999999999999998753 2
Q ss_pred cCCCCCCCCCCC-CCCCCCCcHHHHHHHHHHHHHHhhcccCccccHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcCCEE
Q 004502 660 KNPRAEHPGGND-RADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVM 738 (748)
Q Consensus 660 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 738 (748)
.++.++..|.+. .+|.+.++++.++.+..++.+....... .+++++++++ |+++.+++++|++|...|.|+
T Consensus 601 ~dp~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~e~~~~~~~------~~~~~~~~~~--g~~~~~~e~~l~~l~~~g~i~ 672 (682)
T COG1241 601 VDPEKGKIDIDIIEPGKSKSKRDKIEKVLDIIKELVERSED------PVEEIIEEAE--GISEKEVEEALEKLKKKGDIL 672 (682)
T ss_pred cCccCCceehhhhccCCcchhhhhHHHHHHHHHHHhhcccc------hHHHHHHHHc--CCCHHHHHHHHHHHHhcCcEe
Confidence 335566666665 4678888999999888888877665432 4667777766 899999999999999999999
Q ss_pred EeCCEEEE
Q 004502 739 IADGIVHM 746 (748)
Q Consensus 739 ~~~~~v~~ 746 (748)
..+...++
T Consensus 673 ~~~~g~~~ 680 (682)
T COG1241 673 EPNPGYYL 680 (682)
T ss_pred ccCCCeee
Confidence 87665443
No 3
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-123 Score=1004.83 Aligned_cols=599 Identities=36% Similarity=0.569 Sum_probs=536.8
Q ss_pred cChHHHHHHHHHHHHHhcc-------hhhHHHHHHHHHcCCcEEEEechhHhh-hCCChHHHHhhCHHHHHHHHHHHHHH
Q 004502 3 ISQQEFQERKREFYDFLEL-------SIYQDEIKAMINHKRCRLIVNISDLYA-FREDLPPRLLKNPVEYLQPFCDAATD 74 (748)
Q Consensus 3 ~~~~~~~~~~~~f~~Fl~~-------~~Y~~~i~~~~~~~~~~l~Vd~~dL~~-fd~~La~~l~~~P~~~l~~~~~ai~e 74 (748)
+.|...+.+.+.|.+||+. .+|...+..+...+..+|.||+.||.. |++.|+..|.++|++++|.+..|+.+
T Consensus 17 v~d~~g~~~~e~~~~Fle~~~~~~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~ 96 (764)
T KOG0480|consen 17 VEDTTGERVEEEFLQFLESFKVQAGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHK 96 (764)
T ss_pred EecccccchHHHHHHHHHHhhccccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4455566777777777743 289999998888899999999999999 99999999999999999999999999
Q ss_pred HHHhhCcccccCCceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeeeeeecc
Q 004502 75 WARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDI 154 (748)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~~~~~~ 154 (748)
++..+.........+++++|.|+|. ...+|+|+++.||+||++.|+|+|+|+|+|.+++++|.|..||+.+...+|++
T Consensus 97 ~l~d~~~~~~~~~~~~~v~f~nlp~--~~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~v~q~f 174 (764)
T KOG0480|consen 97 VLKDWSTNSGALVKKIYVRFYNLPT--RHKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRNVEQQF 174 (764)
T ss_pred HHHcccccccccceeEEEEEecccc--ccccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCCeeccchhcC
Confidence 9988554433344569999999874 46789999999999999999999999999999999999999999988777764
Q ss_pred cCCCCCCCCCCCCCC-CCCCCeeEEecCceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEEE
Q 004502 155 TSNTGVPTGSVYPTR-DEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTY 233 (748)
Q Consensus 155 ~~~~~~p~~~~~p~~-~~~g~~~~~~~~~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi~ 233 (748)
++..|+. ||.. |.+...|.++.+.|.|.|||+|||||..++.|.|.+||+++|+|++|||++|+|||+|.||||+
T Consensus 175 --kYt~Pt~--C~np~C~nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGil 250 (764)
T KOG0480|consen 175 --KYTEPTK--CPNPVCSNRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGIL 250 (764)
T ss_pred --ccCCCcc--CCCccccCCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEE
Confidence 7888876 6654 3344689999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC-------CCc-----ccceeEEEEEEeccccccccC--------------------CCCCCCHHHHHHHHHHh
Q 004502 234 KALPGKS-------KGS-----VNGVFRTVLIANNVSLLNKEA--------------------NAPIYTPEDLKSIKKIA 281 (748)
Q Consensus 234 ~~~~~~~-------~~~-----~~~~~~~~~~a~~i~~~~~~~--------------------~~~~~~~~~~~~i~~l~ 281 (748)
.+.|+.. +.. ..+.+-+++.+++|..++... ....++.+|+..+++++
T Consensus 251 iVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~ 330 (764)
T KOG0480|consen 251 IVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMS 330 (764)
T ss_pred EEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHh
Confidence 9987421 111 112566778888887665430 11247889999999999
Q ss_pred cCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 282 ERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 282 ~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
..+++|.+|.+|++|+||||+.+|+||+|+|+||+.|...+|+++|||||||++|||||||||++++++.++||++|++|
T Consensus 331 ~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsG 410 (764)
T KOG0480|consen 331 KDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSG 410 (764)
T ss_pred cCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEee
Q 004502 362 RGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVA 441 (748)
Q Consensus 362 ~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iia 441 (748)
+.++++|||+++++|..+|++.+++|+|++||+|||||||||||+..++.+||||||||+|+|+|+|+.+++|+|.+|||
T Consensus 411 kaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlA 490 (764)
T KOG0480|consen 411 KASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILA 490 (764)
T ss_pred cccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCcc
Q 004502 442 AANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEV 521 (748)
Q Consensus 442 a~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (748)
|+||..|+||+.+++.+||++++|+||||||+|++.|.+++..|..+|+||++.|+.... +
T Consensus 491 AANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~------~------------- 551 (764)
T KOG0480|consen 491 AANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD------A------------- 551 (764)
T ss_pred hcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc------c-------------
Confidence 999999999999999999999999999999999999999999999999999999975321 0
Q ss_pred ccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccCh
Q 004502 522 DTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITA 601 (748)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~ 601 (748)
......|+.+.+++||.||| ++.|.++.+|.+.|.+.|..||+.....+...+|++|+
T Consensus 552 ---------------------~~~~~~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITv 609 (764)
T KOG0480|consen 552 ---------------------TERVCVYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITV 609 (764)
T ss_pred ---------------------ccccccccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccH
Confidence 01124799999999999999 69999999999999999999999874444466899999
Q ss_pred hhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcchhhhh
Q 004502 602 RTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEME 648 (748)
Q Consensus 602 R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~~~~~~ 648 (748)
||||+|||||||+||+++++.||++||++|++|++.|+.+....+.+
T Consensus 610 RqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Siv~ve~ddi~ 656 (764)
T KOG0480|consen 610 RQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSIVRVEGDDIE 656 (764)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhheeecccccc
Confidence 99999999999999999999999999999999999999887554433
No 4
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=1e-115 Score=1006.92 Aligned_cols=703 Identities=23% Similarity=0.369 Sum_probs=578.9
Q ss_pred ChHHHHHHHHHHHHHhcch----------------------hhHHHHHHHHHcC----------CcEEEEechhHhhhCC
Q 004502 4 SQQEFQERKREFYDFLELS----------------------IYQDEIKAMINHK----------RCRLIVNISDLYAFRE 51 (748)
Q Consensus 4 ~~~~~~~~~~~f~~Fl~~~----------------------~Y~~~i~~~~~~~----------~~~l~Vd~~dL~~fd~ 51 (748)
-|+..+++.++|.+||+++ +|..+|.+++..+ .++|+|||+||..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~ 160 (915)
T PTZ00111 81 LDNRLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDK 160 (915)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhH
Confidence 3667788999999998531 8999999999865 4799999999999999
Q ss_pred ChHHHHhhCHHHHHHHHHHHHHHHHHhhC----cccccC--CceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEE
Q 004502 52 DLPPRLLKNPVEYLQPFCDAATDWARNID----PKYLKE--GEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTK 125 (748)
Q Consensus 52 ~La~~l~~~P~~~l~~~~~ai~e~~~~~~----~~~~~~--~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r 125 (748)
+||++|+++|.+++++|++|+.+++..+. +.+... ...++|++.+.+ ...++|+|+++++||||+|+|+|+|
T Consensus 161 ~L~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~vr~~n~~--~~~~iR~L~s~~i~kLV~v~GiV~r 238 (915)
T PTZ00111 161 VLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARLMNKP--VSDCVGNLEPSMADSLVQFSGTVVR 238 (915)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhccccceEEEEEeCCC--CCCCcccCCHhhCCCeEEEEEEEEE
Confidence 99999999999999999999999765432 111111 124789999875 4578999999999999999999999
Q ss_pred ecccceeEEEEEEeecC-----------CCceeeeeeecccCCCCCCCCCCCCCCCCCCCeeEEecCceeeeeeeEEEee
Q 004502 126 CSLVRPKVVKSVHYCPT-----------TGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQ 194 (748)
Q Consensus 126 ~S~V~p~l~~~~f~C~~-----------Cg~~~~~~~~~~~~~~~~p~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~i~iQ 194 (748)
+|.|+|++..++|+|.. ||+.....+. .+.+..|. .||.|. +.++|.+.++.|.|+|||+|+||
T Consensus 239 ~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~--~g~~~~P~--~C~~C~-~~~~f~l~~~~s~f~D~Q~IklQ 313 (915)
T PTZ00111 239 QTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVI--QGEVNEPL--LCNECN-SKYTFELNHNMCVYSTKKIVKLL 313 (915)
T ss_pred ccCcchhhEEEEEECCCCCcccCCccccCCcccccccc--CCcccCCC--CCCCCC-CCCCeEEccCccEEEeeeEEEEe
Confidence 99999999999999997 5433211111 13455564 377643 44579999999999999999999
Q ss_pred cCCCCCCCCCCC--------------------ceEEeeeecccccccCCCCEEEEEEEEeecCCCCC---CcccceeEEE
Q 004502 195 EVPEKSAPGQLP--------------------RTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSK---GSVNGVFRTV 251 (748)
Q Consensus 195 E~~e~~~~G~~P--------------------rsi~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~~~~---~~~~~~~~~~ 251 (748)
|.|+.+|+|++| |+++|+|++||||+|+|||+|+|||||++.+.... ....++|++|
T Consensus 314 E~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~~~~~~y 393 (915)
T PTZ00111 314 QSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYF 393 (915)
T ss_pred eCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccccccccccccccceE
Confidence 999999999999 99999999999999999999999999998774322 1235689999
Q ss_pred EEEeccccccccC------------CCCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccc
Q 004502 252 LIANNVSLLNKEA------------NAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKN 319 (748)
Q Consensus 252 ~~a~~i~~~~~~~------------~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~ 319 (748)
+.+++|+..++.. ....+++++++.|++++++|++|+.|++||||+|+|++.+|+||+|+|+||+.+.
T Consensus 394 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~ 473 (915)
T PTZ00111 394 VNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNS 473 (915)
T ss_pred EEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccc
Confidence 9999998753211 2346999999999999999999999999999999999999999999999999874
Q ss_pred c-----CCC----ccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeee-ecccccceeeccceE
Q 004502 320 L-----KNG----THLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVT-SDQETGERRLEAGAM 389 (748)
Q Consensus 320 ~-----~~~----~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~-~~~~~g~~~~~~G~l 389 (748)
. ++| .++||++||||+|+||||||++|+++++.+|+..+++|.+++.+|+++... .+..+|+|.+++|++
T Consensus 474 ~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaL 553 (915)
T PTZ00111 474 SDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAV 553 (915)
T ss_pred cccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcE
Confidence 3 344 789999999999999999999999999999999999999999999999876 455678999999999
Q ss_pred eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcc
Q 004502 390 VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSR 469 (748)
Q Consensus 390 ~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsR 469 (748)
++|++|+||||||++|++.+|.+||++||+|+++|+++|+..+++++|+||||+||.+|+||+++++.+|++||++||||
T Consensus 554 vlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSR 633 (915)
T PTZ00111 554 VLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTR 633 (915)
T ss_pred EEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCC
Q 004502 470 FDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTL 549 (748)
Q Consensus 470 Fdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 549 (748)
|||+|++.|.++++.|+.||.||++.|......+.+... ..+..... ..+. + +..........+
T Consensus 634 FDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~----~~~~~~~~-----~~~~--~-----~~~~~~~~~~~i 697 (915)
T PTZ00111 634 FDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDE----DTYDRSNT-----MHVE--D-----ESLRSEKDYNKN 697 (915)
T ss_pred hcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccc----cchhcccc-----cccc--c-----cccccccccCCC
Confidence 999999999999999999999999987421100000000 00000000 0000 0 000001123458
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccC---------------------CCCCCCCcccChhhhhhHH
Q 004502 550 TIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSS---------------------NAKTGGTLPITARTLETII 608 (748)
Q Consensus 550 ~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~---------------------~~~~~~~~~~t~R~Lesli 608 (748)
+.++|++||+|||++++|.||++|.+.|.++|++||+... ......++++|+||||+||
T Consensus 698 ~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLI 777 (915)
T PTZ00111 698 DLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSII 777 (915)
T ss_pred CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999997421 0112346899999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcchhhhhHHHHHHhhhhhcCCCCCCCCCCC-CCCCCCCcHHHHHHHH
Q 004502 609 RLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQREQEKNPRAEHPGGND-RADHSTNDNERMEAFN 687 (748)
Q Consensus 609 Rla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 687 (748)
|||+|+|||+|++.|+++||++|++||+.|+++. ..++++|..|.+. .+|.+++++++++.+.
T Consensus 778 RLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~----------------~~DpetG~iD~d~~~~G~s~~~r~~~~~~~ 841 (915)
T PTZ00111 778 RISVSLARMRLSTVVTPADALQAVQIVKSSTFQS----------------LVDPTTGKIDFDQLHQGITTNKMQQLNQMY 841 (915)
T ss_pred HHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhh----------------cccccCCcccceeeccCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999998754 2346788888876 4688889999988888
Q ss_pred HHHHHHhhcc----cCccccHHHHHHHHhc------ccCCCCCHHHHHHHHHHHHhcCCEEEeCCEEE
Q 004502 688 SVFGQHMRAN----RLDLITITELEEIVNT------GMDAHYSRAEITFLLEKLQDENRVMIADGIVH 745 (748)
Q Consensus 688 ~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~v~ 745 (748)
+++..+.... ....++++++.+.+.+ +...|+++++++++|++|+++|.|+....-.|
T Consensus 842 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~~~~~g~y 909 (915)
T PTZ00111 842 EQVLSVLTRSSNQDSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQEGTAVRENNSYY 909 (915)
T ss_pred HHHHHHHHhhhccccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhCCeEeeeCCCch
Confidence 8776654322 1245787777777642 35578999999999999999999988765433
No 5
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-118 Score=935.87 Aligned_cols=655 Identities=33% Similarity=0.525 Sum_probs=560.8
Q ss_pred HHHHHHHHHhcch---hhHHHHHHHHHcCCcEEEEechhHhhhCC--ChHHHHhhCHHHHHHHHHHHHHHHHHhhC----
Q 004502 10 ERKREFYDFLELS---IYQDEIKAMINHKRCRLIVNISDLYAFRE--DLPPRLLKNPVEYLQPFCDAATDWARNID---- 80 (748)
Q Consensus 10 ~~~~~f~~Fl~~~---~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~--~La~~l~~~P~~~l~~~~~ai~e~~~~~~---- 80 (748)
.++.++.+|.+.. +|+++++++++++...++||++||.+|+. +|...|..|..+|..+|..|+.+++....
T Consensus 16 ~~~~fl~e~~e~~~~~kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~~~~~~~ 95 (721)
T KOG0482|consen 16 KIKKFLDEFYEDNELGKYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPEPTGEIP 95 (721)
T ss_pred HHHHHHHhhhccCchhHHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 4455555555433 89999999999999999999999999984 79999999999999999999999885432
Q ss_pred ---------------------cccccC--------CceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEEecccce
Q 004502 81 ---------------------PKYLKE--------GEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRP 131 (748)
Q Consensus 81 ---------------------~~~~~~--------~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r~S~V~p 131 (748)
|....+ ..+..+.|..+...++.++|++++.+||+||+|+|+|||+|+|||
T Consensus 96 ~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIVTR~S~VKP 175 (721)
T KOG0482|consen 96 YGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIVTRVSDVKP 175 (721)
T ss_pred cCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEEEecccccc
Confidence 110000 013457777666667788999999999999999999999999999
Q ss_pred eEEEEEEeecCCCceeeeeeecccCCCCCCCCCCCCCC-C---CCCCeeEEecCceeeeeeeEEEeecCCCCCCCCCCCc
Q 004502 132 KVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTR-D---EHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPR 207 (748)
Q Consensus 132 ~l~~~~f~C~~Cg~~~~~~~~~~~~~~~~p~~~~~p~~-~---~~g~~~~~~~~~s~f~d~Q~i~iQE~~e~~~~G~~Pr 207 (748)
.+..++|.|..||.++ ||.+.+..+.|.. -||.. | ..+..+.+....|+|+.||++++||..+++|.|++||
T Consensus 176 ~m~VatYtCd~CGaE~---yQeV~s~~F~pl~-~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPvG~IPR 251 (721)
T KOG0482|consen 176 SMVVATYTCDQCGAET---YQEVNSRTFTPLS-ECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPVGHIPR 251 (721)
T ss_pred ceEEEEEecccccHhh---hccccCccccchh-hCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCCCccCc
Confidence 9999999999999987 8888888888863 46653 2 1233566777889999999999999999999999999
Q ss_pred eEEeeeecccccccCCCCEEEEEEEEeecCCCCCC--cccceeEEEEEEeccccccccCCCCCCCHHHHHHHHHHhcCcc
Q 004502 208 TVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKG--SVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDD 285 (748)
Q Consensus 208 si~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~~~~~--~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 285 (748)
|++|+++++++.+|.|||.|.|+||+.+.|...-. ...-+-++|++|..|...++.+.+.+++.+...++.++....+
T Consensus 252 sltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLladtYLeAh~v~~~nk~~~~~~~~~~~~~~~~~~~~~~d 331 (721)
T KOG0482|consen 252 SLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLADTYLEAHRVVQINKKYDNIEKTGELEPEELELIAEGD 331 (721)
T ss_pred eeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHHHHHHHHhhhhhhccccccccccccccHHHHHHhhccc
Confidence 99999999999999999999999999998854211 1123568999999998888887777777777777778888899
Q ss_pred HHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCC
Q 004502 286 TFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSS 365 (748)
Q Consensus 286 ~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~ 365 (748)
.|++|+.||||+||||+++|+|++|.|+||+.+.+.+|+++||+|||||+||||++||||++++.+++||++|++|++++
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS 411 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS 411 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCC
Q 004502 366 GVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANP 445 (748)
Q Consensus 366 ~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np 445 (748)
++||||++.+|+.+|+.+++.|+|++||+|||||||||||.+.++.++||+||||+|+|+|+|+.++||+||+|+||+||
T Consensus 412 GVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANP 491 (721)
T KOG0482|consen 412 GVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANP 491 (721)
T ss_pred ccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccch
Q 004502 446 IYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDA 525 (748)
Q Consensus 446 ~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (748)
.+|+||+..++.+||+||.+||||||++|++.|.|+.+.|..+|+||...|+...+.
T Consensus 492 ayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp----------------------- 548 (721)
T KOG0482|consen 492 AYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQP----------------------- 548 (721)
T ss_pred cccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCC-----------------------
Confidence 999999999999999999999999999999999999999999999999999865431
Q ss_pred hhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhh
Q 004502 526 SVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLE 605 (748)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~Le 605 (748)
.....+++++.+|.||++||+ ..|.++++..++|...|++||+..... ......|+|.|.
T Consensus 549 -----------------~~~fepl~~~~mR~yI~~ak~-~~P~vp~~l~dyi~~AYv~~Rrea~~~--~~~t~ttpRtLL 608 (721)
T KOG0482|consen 549 -----------------PLDFEPLDPNLMRRYISLAKR-KNPVVPEALADYITGAYVELRREARSS--KDFTYTTPRTLL 608 (721)
T ss_pred -----------------CccCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhcc--CCCcccCHHHHH
Confidence 012467999999999999997 899999999999999999999987532 234578999999
Q ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcchhhhhHHHHHHhhhhhcCCCCCCCCCCCCCCCCCCcHHHHHH
Q 004502 606 TIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQREQEKNPRAEHPGGNDRADHSTNDNERMEA 685 (748)
Q Consensus 606 sliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (748)
+|+|||.|+||||+++.|.++||.||++||+.|-.+....+ ..+ .+.+. ...
T Consensus 609 ~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~sL~~~~---------------~~~--------~~~~~-----~~~ 660 (721)
T KOG0482|consen 609 GILRLSTALARLRLSDSVEEDDVNEALRLMEMSKDSLYQDD---------------GQK--------EDTSA-----TDA 660 (721)
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhccccccc---------------ccc--------cccch-----HHH
Confidence 99999999999999999999999999999997643211000 000 01111 223
Q ss_pred HHHHHHHHhhcccCccccHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcCCEEEeCC
Q 004502 686 FNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADG 742 (748)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 742 (748)
+-.+++++....+...+++. ++.++....||++.++++||+.+..-|.|.++.+
T Consensus 661 if~iirel~~e~g~~~v~~s---~~~~r~~~kGfs~~ql~~~i~ey~~lnVw~~~~~ 714 (721)
T KOG0482|consen 661 IFAIIRELAGEGGKRCVKLS---NAEQRCVRKGFSEAQLKKCIDEYAELNVWQVNNE 714 (721)
T ss_pred HHHHHHHHHhhcCCceeeHH---HHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEecC
Confidence 34456666664444457744 4445555688999999999999999999999754
No 6
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-116 Score=956.15 Aligned_cols=654 Identities=34% Similarity=0.536 Sum_probs=571.1
Q ss_pred HHHHHHHHHHHHhcch--------hhHHHHHHHHHcCCcEEEEechhHhhhCCChHHHHhhCHHHHHHHHHHHHHHHHHh
Q 004502 7 EFQERKREFYDFLELS--------IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARN 78 (748)
Q Consensus 7 ~~~~~~~~f~~Fl~~~--------~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~ 78 (748)
.++++.+.|.+||..+ +|++.+.++..-+...+.+|..||..|+.+||..+..+|.++++.|+.++++++.+
T Consensus 129 ~iqe~~~~F~~fl~rf~~~d~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~~~e 208 (804)
T KOG0478|consen 129 NIQECPENFDDFLRRFRGIDPLCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEIVLE 208 (804)
T ss_pred EHHhhhhHHHHHHHhcCCCCccchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHHHHh
Confidence 4678999999999643 79999999999999999999999999999999999999999999999999999988
Q ss_pred hCcccccCCceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeeeeeecccCCC
Q 004502 79 IDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNT 158 (748)
Q Consensus 79 ~~~~~~~~~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~~~~~~~~~~ 158 (748)
..+.-.. ...+.||-.|+ ....++|+|+++.|+|||+|+|+|+|+|+|.|.+++++|+|..|++....+.. .+..
T Consensus 209 ~~~~~~~-~~~i~vRPfn~--~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~~~~ve~d--rg~i 283 (804)
T KOG0478|consen 209 RYVLEIL-EKSIKVRPFNA--GKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGHEIAVESD--RGRI 283 (804)
T ss_pred hccccch-hceeEeeccCc--ccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCceEEEEee--cCcc
Confidence 7654222 23366764443 25678999999999999999999999999999999999999999998866543 2455
Q ss_pred CCCCCCCCCCCCCCCCeeEEecCceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEEEeecCC
Q 004502 159 GVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPG 238 (748)
Q Consensus 159 ~~p~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~ 238 (748)
..|. .|+ .|...+.|.+.++.|.|.|.|.||+||.|+.+|.|++|++++|++++||||+|+|||+|+|||||+..|.
T Consensus 284 ~eP~--~C~-~C~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~ 360 (804)
T KOG0478|consen 284 KEPM--LCK-ECGTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPV 360 (804)
T ss_pred CCCc--ccc-cccCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEe
Confidence 5564 366 3444567999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCCC---cccceeEEEEEEeccccccccC--------CCCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHH
Q 004502 239 KSKG---SVNGVFRTVLIANNVSLLNKEA--------NAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKA 307 (748)
Q Consensus 239 ~~~~---~~~~~~~~~~~a~~i~~~~~~~--------~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~a 307 (748)
+.+. ..+++|++|+++.|+.+.+... .+..+..++++.|.+++++||+|+.|++||||+|||+|++|+|
T Consensus 361 r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkg 440 (804)
T KOG0478|consen 361 RVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKG 440 (804)
T ss_pred ccCcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhh
Confidence 5432 3567999999999998765421 2335667789999999999999999999999999999999999
Q ss_pred HHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccc
Q 004502 308 VILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAG 387 (748)
Q Consensus 308 ill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G 387 (748)
++|+||||+.|....+-++||+|||||+||||||||+|++++++++|+++|++|++++++|||+.+++|+.+++|+++.|
T Consensus 441 lLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesG 520 (804)
T KOG0478|consen 441 LLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESG 520 (804)
T ss_pred HHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecC
Confidence 99999999999988877999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhh
Q 004502 388 AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLL 467 (748)
Q Consensus 388 ~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Ll 467 (748)
+|+++|+|||||||||||+...++.|||+||||+++|+|||+.++||+|++|||++||..++||+++++.|||+||++||
T Consensus 521 ALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLL 600 (804)
T KOG0478|consen 521 ALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLL 600 (804)
T ss_pred cEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCC
Q 004502 468 SRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRD 547 (748)
Q Consensus 468 sRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (748)
|||||+|.++|.+|+..|+.++.|++.+|....+ .+...
T Consensus 601 SRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~-----------------------------------------~~~~~ 639 (804)
T KOG0478|consen 601 SRFDLIFLLLDKPDERSDRRLADHIVALYPETGE-----------------------------------------KQGSE 639 (804)
T ss_pred hhhcEEEEEecCcchhHHHHHHHHHHHhcccccc-----------------------------------------cchhH
Confidence 9999999999999999999999999999864211 01134
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHH
Q 004502 548 TLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSD 627 (748)
Q Consensus 548 ~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~D 627 (748)
.++..+|+.||.|||++++|.+++||.+.+...|+.||+.+... +.+..|+||||+|+||+||||++++++.|...|
T Consensus 640 ~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~---~~itat~rQlesLiRlsEahak~r~s~~ve~~d 716 (804)
T KOG0478|consen 640 AIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGA---GQITATPRQLESLIRLSEAHAKMRLSNRVEEID 716 (804)
T ss_pred HHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccc---cccchhHHHHHHHHHHHHHHHHhhcccccchhh
Confidence 57788999999999999999999999999999999999987543 246789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcchhhhhHHHHHHhhhhhcCCCCCCCCCCC-CCCCCCCcHHHHHHHHHHHHHHhhcccCccccHHH
Q 004502 628 VEAALKALNFAIYHKELTEMEEREQERQREQEKNPRAEHPGGND-RADHSTNDNERMEAFNSVFGQHMRANRLDLITITE 706 (748)
Q Consensus 628 v~~Ai~l~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (748)
|++|++|.+.+|... ++ ++.+|..|... .+|.+...+.+.+.+...+.....
T Consensus 717 V~eA~~l~R~aL~~~-a~---------------d~~tg~vd~~~l~tg~s~~~~~~~~~~~~ai~~~l~----------- 769 (804)
T KOG0478|consen 717 VEEAVRLLREALKQS-AT---------------DPATGKVDMDILATGNSVVSRKKVEILGGAILKMLK----------- 769 (804)
T ss_pred HHHHHHHHHHHhccc-CC---------------CCCCCceeehhhhhcccccchHHHHHHHHHHHHHhH-----------
Confidence 999999999998764 22 23455555444 568777777777766554443222
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhcCCEEEeCCEEE
Q 004502 707 LEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVH 745 (748)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~v~ 745 (748)
.. ....+++.++.++|+.|++.|.+..+++.+.
T Consensus 770 -----~~-~~~~~~~~~~~~al~~l~~~~~~~~s~~~~r 802 (804)
T KOG0478|consen 770 -----DE-SQKGIEEEMFLEALEELQKEGKIIVSGKTIR 802 (804)
T ss_pred -----HH-HHHHHHHHHHHHHHHHHhhcCceeecccccc
Confidence 11 2234678899999999999999999888554
No 7
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-111 Score=890.75 Aligned_cols=669 Identities=33% Similarity=0.516 Sum_probs=557.0
Q ss_pred HHHHHHHHHHHHhcch------hhHHHHHHHHHcCCcEEEEechhHhhhCCChHHHHhhCHHHHHHHHHHHHHHHHHhhC
Q 004502 7 EFQERKREFYDFLELS------IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNID 80 (748)
Q Consensus 7 ~~~~~~~~f~~Fl~~~------~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~~ 80 (748)
..+.++..|++|+..+ +|+++|+.....+.++|.|+++||..||.+|++.|..+|.++||+|++|+.++...+.
T Consensus 24 ~~~~v~~~fkefir~f~~~~~f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad~i~ 103 (729)
T KOG0481|consen 24 RKSQVKTKFKEFIRQFRTGTDFKYRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVADEIT 103 (729)
T ss_pred cHHHHHHHHHHHHHHhccccccchHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHhhhc
Confidence 3567889999998643 7999999999999999999999999999999999999999999999999999998775
Q ss_pred cccccC---CceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeee-eee-ccc
Q 004502 81 PKYLKE---GEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTR-EYR-DIT 155 (748)
Q Consensus 81 ~~~~~~---~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~-~~~-~~~ 155 (748)
...... ...+.|-+. ...+++++|+|+++++.|||.|.|||+.+|.|+.+.+.....|.+|.+.... ... .+.
T Consensus 104 ~~~~~~E~~~~d~Qv~L~--sda~p~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~~~~~pgl~ 181 (729)
T KOG0481|consen 104 RPRPSGEEVLHDIQVLLT--SDANPISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPNVIMRPGLE 181 (729)
T ss_pred CCCcCCCccceeeEEEEe--cCCCcccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccceecCCCcc
Confidence 432221 123445443 2346788999999999999999999999999999999999999999876532 111 122
Q ss_pred CCCCCCCCCCCC---CCCCCCCeeEEecCceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEE
Q 004502 156 SNTGVPTGSVYP---TRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGT 232 (748)
Q Consensus 156 ~~~~~p~~~~~p---~~~~~g~~~~~~~~~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi 232 (748)
-+.+|+.|..| ...|.-.||.+.++.|+|+|+|.+|+||.||.+|.|++||++.++++..|++++.||.||+|+||
T Consensus 182 -g~~lPR~C~~~~~~k~~Cp~DPyii~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GI 260 (729)
T KOG0481|consen 182 -GYALPRKCDTPQAGKPKCPLDPYIIMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGI 260 (729)
T ss_pred -ccccccccCCcccCCCCCCCCCEEEcccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhccccCCceEEEEEE
Confidence 25577765422 12234468999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCC----CcccceeEEEEEEeccccccccC---CCCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHH
Q 004502 233 YKALPGKSK----GSVNGVFRTVLIANNVSLLNKEA---NAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIK 305 (748)
Q Consensus 233 ~~~~~~~~~----~~~~~~~~~~~~a~~i~~~~~~~---~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K 305 (748)
|.+....+. ...-++-..|+.+..|+..+... ....||+++.+.|++++..+++|+.|.+||||+|||++++|
T Consensus 261 YsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiK 340 (729)
T KOG0481|consen 261 YSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMFTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIK 340 (729)
T ss_pred EEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccCChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHH
Confidence 987643211 11234667889988887654332 23479999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeec
Q 004502 306 KAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLE 385 (748)
Q Consensus 306 ~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~ 385 (748)
+|+.+.||||+.|.+++|...||||||||.|||||+||||++++-+.+|-++|++|++++++||||++.+|+.+.+++++
T Consensus 341 kAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylE 420 (729)
T KOG0481|consen 341 KAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLE 420 (729)
T ss_pred HHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChh
Q 004502 386 AGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDS 465 (748)
Q Consensus 386 ~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~ 465 (748)
.|++++||||||||||||||.++++.++||+||||+++|+|+|++++||+||+|+||+||.+|+||..++..+||++.+.
T Consensus 421 GGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~T 500 (729)
T KOG0481|consen 421 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPT 500 (729)
T ss_pred cceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCc
Q 004502 466 LLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQK 545 (748)
Q Consensus 466 LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (748)
+|||||+||++.|..+++.|..+|+|++++|..... + ..++ ++..
T Consensus 501 ILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n------~--------~~~~---------------------~~~~ 545 (729)
T KOG0481|consen 501 ILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKAN------A--------QTDS---------------------QEEN 545 (729)
T ss_pred HhhhccEEEEEeccCcchhhhHHHHHhhhhhccccc------c--------ccCc---------------------cccC
Confidence 999999999999999999999999999999985321 0 0000 0113
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccC----CCCCCCCcccChhhhhhHHHHHHHHHHhcCCC
Q 004502 546 RDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSS----NAKTGGTLPITARTLETIIRLSTAHAKMKLNR 621 (748)
Q Consensus 546 ~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~----~~~~~~~~~~t~R~LesliRla~A~Akl~~~~ 621 (748)
...++.+.|++||.|||.++.|.||++|.+.|...|+.||+.-. ......++|+|+||||++||++++.|||+|+.
T Consensus 546 ~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~ 625 (729)
T KOG0481|consen 546 EGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSP 625 (729)
T ss_pred CCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCc
Confidence 56788999999999999999999999999999999999997532 22235679999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHhhhhcchhhhhHHHHHHhhhhhcCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccc-Cc
Q 004502 622 KISKSDVEAALKALNFAIYHKELTEMEEREQERQREQEKNPRAEHPGGNDRADHSTNDNERMEAFNSVFGQHMRANR-LD 700 (748)
Q Consensus 622 ~V~~~Dv~~Ai~l~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 700 (748)
.+|+.||++|++||+.|.-+... .|.+.+ ..|. ++.+-.+.++++=.++.+.-. ..
T Consensus 626 ~ate~hV~EA~RLF~vSTmdAa~-------------------~g~l~g--~egf--~s~e~~e~i~rie~qlkrr~~IG~ 682 (729)
T KOG0481|consen 626 FATEAHVEEALRLFQVSTMDAAS-------------------QGTLAG--VEGF--TSPEDQEEIKRIEKQLKRRFAIGS 682 (729)
T ss_pred cccHHHHHHHHHHHhHhhHHHHh-------------------cCchhc--cccc--CCHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999987543211 111111 1231 122233334443222222111 12
Q ss_pred cccHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcCCEEE
Q 004502 701 LITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMI 739 (748)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 739 (748)
.++.. .++++....|+++..++++|..|.+.|.|..
T Consensus 683 ~~se~---~li~df~~~~y~e~~v~kal~~m~~rg~iq~ 718 (729)
T KOG0481|consen 683 QVSEH---SLIRDFVRQGYSEHAVKKALQIMLRRGEIQH 718 (729)
T ss_pred chhHH---HHHHHHHhccccHHHHHHHHHHHHhhhHHHH
Confidence 34433 3444444567999999999999999988765
No 8
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=3.9e-106 Score=864.94 Aligned_cols=598 Identities=37% Similarity=0.550 Sum_probs=535.0
Q ss_pred HHHHHHHHHHHHhcch-------hhHHHHHHHHHcCCcEEEEechhHhhhCCChHHHHhhCHHHHHHHHHHHHHHHHHhh
Q 004502 7 EFQERKREFYDFLELS-------IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNI 79 (748)
Q Consensus 7 ~~~~~~~~f~~Fl~~~-------~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~ 79 (748)
...++.++|++||.++ .|...|+.+...+..+|.|++.||..-.+.||..|-+.|.+.+.+|+.++.+++...
T Consensus 157 ~r~~i~~~fk~fl~~y~d~~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~~ 236 (854)
T KOG0477|consen 157 VRREIARRFKNFLREYVDENGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLLH 236 (854)
T ss_pred hhhHHHHHHHHHHHHHhcccccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3457778888888543 899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeeeeeecccCCCC
Q 004502 80 DPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTG 159 (748)
Q Consensus 80 ~~~~~~~~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~~~~~~~~~~~ 159 (748)
.|+|.....++||++.++|.. ..+|.||-.|+|+||.+.|+||+.|.|.|.+....|.|.+||......++.... ..
T Consensus 237 ~p~yeri~~~ihvris~lP~~--~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs~n~-ev 313 (854)
T KOG0477|consen 237 YPNYERIHNEIHVRISDLPVC--ESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQSSNS-EV 313 (854)
T ss_pred CCChhhcccceeeeeecCCcc--ccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeeccCc-ee
Confidence 999988777899999998753 468999999999999999999999999999999999999999765544444222 12
Q ss_pred CCCCCCCCCCCCCCCeeEEecCceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEEEeecCCC
Q 004502 160 VPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGK 239 (748)
Q Consensus 160 ~p~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~~ 239 (748)
+...||.|.+.| +|..+.....|.+||+|+|||.|..+|+|.+|||.+|+|..||||.|+|||.|.|||||....+.
T Consensus 314 --kp~~C~~cqSkG-pf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~ 390 (854)
T KOG0477|consen 314 --KPGSCPECQSKG-PFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDG 390 (854)
T ss_pred --CCCCCccccCCC-CCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeecccccc
Confidence 234699887665 78888889999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCc--ccceeEEEEEEeccccccccCCCCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcc
Q 004502 240 SKGS--VNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVE 317 (748)
Q Consensus 240 ~~~~--~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~ 317 (748)
+-+. .-++|-++++||||.+.........++.++.+.|.++++++.+-.++.+||||+||||+++|+|++|+|+||++
T Consensus 391 sLN~kngFpvfatvi~ANhV~~k~~~~~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~ 470 (854)
T KOG0477|consen 391 SLNTKNGFPVFATVIEANHVVKKDGKFDVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVP 470 (854)
T ss_pred cccccCCccccceeheehhhhhhccccchhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCc
Confidence 4322 23689999999999876655555678999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCcee
Q 004502 318 KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVV 397 (748)
Q Consensus 318 ~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil 397 (748)
|+...|+++||+|||||+|+|||||||++||+++.++|+++++|.+++++|||+++.+++.+++|.+++|+|+|||+|||
T Consensus 471 kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvC 550 (854)
T KOG0477|consen 471 KNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVC 550 (854)
T ss_pred cCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEec
Q 004502 398 CIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVL 477 (748)
Q Consensus 398 ~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~ 477 (748)
||||||||++.++..+|||||||.|+|+|+|+.++|++||++|||+||..|+||+..++++|.+|..|+|||||+.+++.
T Consensus 551 lIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvk 630 (854)
T KOG0477|consen 551 LIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVK 630 (854)
T ss_pred EeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHH
Q 004502 478 DQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKY 557 (748)
Q Consensus 478 d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrky 557 (748)
|..|...|+++|++++..|...-+- . ..++..+ +..+ .....+++.+.||||
T Consensus 631 D~vd~~~De~lA~fVV~Sh~r~hp~-~-----------~~~~~~~---------e~~~-------~~~v~~ipq~lLrky 682 (854)
T KOG0477|consen 631 DTVDPVQDEKLAKFVVGSHVRHHPS-N-----------KEEDGLE---------EPQM-------PARVEPIPQELLRKY 682 (854)
T ss_pred cccCchhHHHHHHHHHHhHhhcCCc-c-----------cccCccc---------cccc-------ccccccChHHHHHHH
Confidence 9999999999999999998643210 0 0000000 0000 011356999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004502 558 IHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNF 637 (748)
Q Consensus 558 i~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~ 637 (748)
|.|||.+++|.|.+--.+.+...|.+||+.... .+++|+|.|.+|++||+|+|||||+||+.|+.+|+..||+.+..
T Consensus 683 I~yar~~v~PkL~q~d~~K~s~vya~lRkES~~---tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ld 759 (854)
T KOG0477|consen 683 IIYAREKVRPKLNQMDMDKISSVYADLRKESMA---TGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLD 759 (854)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHHHhhccc---cCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHH
Confidence 999999999999999999999999999998653 35699999999999999999999999999999999999999998
Q ss_pred hhhh
Q 004502 638 AIYH 641 (748)
Q Consensus 638 sl~~ 641 (748)
|+..
T Consensus 760 Sfi~ 763 (854)
T KOG0477|consen 760 SFIS 763 (854)
T ss_pred HHHH
Confidence 8654
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=2.6e-93 Score=810.73 Aligned_cols=496 Identities=48% Similarity=0.761 Sum_probs=442.2
Q ss_pred ccccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeeeeeecccCCCCCCCCCCCCCC-CCCCCeeEEec
Q 004502 102 CVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTR-DEHGNLLVTEY 180 (748)
Q Consensus 102 ~~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~~~~~~~~~~~~p~~~~~p~~-~~~g~~~~~~~ 180 (748)
++++|+|++.++||||+|+|+|+|+|.|+|++.+++|+|..||+.....+++ +.+..|. .||.. |.+.++|.+++
T Consensus 2 ~~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~--~~~~~p~--~C~~~~C~~~~~f~l~~ 77 (509)
T smart00350 2 PSSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQS--GRETEPT--VCPPRECQSPTPFSLNH 77 (509)
T ss_pred CCCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecC--CcccCCC--cCCCCcCCCCCceEecc
Confidence 4578999999999999999999999999999999999999999987665543 3455554 47652 33445789999
Q ss_pred CceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEEEeecCC-CCC--CcccceeEEEEEEecc
Q 004502 181 GLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPG-KSK--GSVNGVFRTVLIANNV 257 (748)
Q Consensus 181 ~~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~-~~~--~~~~~~~~~~~~a~~i 257 (748)
+.|+|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|+|+|||++.+. ... ......|.+|+.|++|
T Consensus 78 ~~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i 157 (509)
T smart00350 78 ERSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHV 157 (509)
T ss_pred CCCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEE
Confidence 9999999999999999999999999999999999999999999999999999998752 111 1122458999999999
Q ss_pred cccccc--CC-----CCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcc
Q 004502 258 SLLNKE--AN-----APIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDI 330 (748)
Q Consensus 258 ~~~~~~--~~-----~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i 330 (748)
+..+.. .. ...+++++++.|+++++++++|+.|++|++|.|+|++.+|+|++++|+||+.+...+|.++||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~ 237 (509)
T smart00350 158 RKLDYKRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDI 237 (509)
T ss_pred EEccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccc
Confidence 876532 11 13589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
||||+|+||||||++|+++++++|+..+++|.+.+.+|+++...+++.+|+|.+++|++++|++|+|||||+++|++..+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q 317 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDR 317 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHH
Confidence 99999999999999999999999999999998888899999888888889999999999999999999999999999999
Q ss_pred HHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHH
Q 004502 411 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISD 490 (748)
Q Consensus 411 ~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~ 490 (748)
.+|+++||+|++++.++|+..+++++|+||||+||.+|+||+.+++.+|++||++|||||||+|.+.|.++.++|..|++
T Consensus 318 ~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~ 397 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAK 397 (509)
T ss_pred HHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCC
Q 004502 491 HVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELT 570 (748)
Q Consensus 491 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls 570 (748)
|++..|...... . .......++.+.|++||+|||+++.|.+|
T Consensus 398 ~i~~~~~~~~~~----------------~----------------------~~~~~~~~~~~~l~~yi~~ar~~~~P~ls 439 (509)
T smart00350 398 HVVDLHRYSHPE----------------P----------------------DEADEVPISQEFLRKYIAYAREKIKPKLS 439 (509)
T ss_pred HHHHhhcccCcc----------------c----------------------cccccccCCHHHHHHHHHHHHhcCCCCCC
Confidence 999987532110 0 00013468999999999999988999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhh
Q 004502 571 DEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAI 639 (748)
Q Consensus 571 ~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl 639 (748)
+++.++|.++|.++|..+........+++|+|+|++|||+|+|+|||++|+.|+++||.+|++||..|+
T Consensus 440 ~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~ 508 (509)
T smart00350 440 EEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESI 508 (509)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhh
Confidence 999999999999999865432112357899999999999999999999999999999999999999875
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=1.9e-71 Score=598.72 Aligned_cols=331 Identities=49% Similarity=0.817 Sum_probs=271.8
Q ss_pred HHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHh
Q 004502 273 DLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 273 ~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
|+++|.++++++++|+.|++||||+|+|++.+|+|++|+|+||+.+..++|.+.||+|||||+|+||||||+|+++++++
T Consensus 1 d~~~i~~l~~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~ 80 (331)
T PF00493_consen 1 DEEKIKELSKKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL 80 (331)
T ss_dssp THHHHHCCCCTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT
T ss_pred CHHHHHHHhcCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEE
Q 004502 353 APLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 353 ~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
+|++++++|.+++++|||+++.+++.+|+|.+++|++++|++|||||||||+|+++++.+||++||+|+++++|+|+..+
T Consensus 81 ~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 81 APRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp -SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred CCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccc
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCC
Q 004502 433 LNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGS 512 (748)
Q Consensus 433 l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~ 512 (748)
+|++|+|+||+||.+|+||+++++.+|+++|++|+|||||+|++.|.++.+.|..+|+|+++.|......
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~---------- 230 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKS---------- 230 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S------------
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999988753210
Q ss_pred CCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q 004502 513 SRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAK 592 (748)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~ 592 (748)
..+ ........++.++|++||.|||++++|.||++|.+.|.++|+.+|+.....
T Consensus 231 ----~~~---------------------~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~- 284 (331)
T PF00493_consen 231 ----KEK---------------------KIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSN- 284 (331)
T ss_dssp -------------------------------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCH-
T ss_pred ----ccc---------------------cccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccccc-
Confidence 000 000012578999999999999988999999999999999999999876311
Q ss_pred CCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhh
Q 004502 593 TGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIY 640 (748)
Q Consensus 593 ~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~ 640 (748)
....++|+|+||+|||||+|||||++|++|+++||.+|++||+.|+.
T Consensus 285 -~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~Sl~ 331 (331)
T PF00493_consen 285 -NKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEESLK 331 (331)
T ss_dssp -SS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHHHH-
T ss_pred -ccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHhhcC
Confidence 34589999999999999999999999999999999999999998863
No 11
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-28 Score=264.65 Aligned_cols=266 Identities=24% Similarity=0.351 Sum_probs=201.1
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE-----------EeccCCC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI-----------STTGRGS 364 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~-----------~~~g~~~ 364 (748)
.+|.|++..|+|+.++.+|| | |+|++||||||||++++.+..++|+.. .+.|...
T Consensus 179 ~DV~GQ~~AKrAleiAAAGg---------H-----nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGG---------H-----NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLH 244 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcC---------C-----cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccc
Confidence 46899999999999999999 7 999999999999999999999999821 2222211
Q ss_pred CC-----------cccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEe
Q 004502 365 SG-----------VGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASL 433 (748)
Q Consensus 365 ~~-----------~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l 433 (748)
.. .+-+++. ....+|....+||.+.+||+||+||||+-.+....+++|.+.||++.+.|++++..+++
T Consensus 245 ~~~~~~~~rPFr~PHHsaS~-~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~y 323 (490)
T COG0606 245 EGCPLKIHRPFRAPHHSASL-AALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTY 323 (490)
T ss_pred ccCccceeCCccCCCccchH-HHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEE
Confidence 11 0111111 11234556789999999999999999999999999999999999999999999999999
Q ss_pred ccceeEeeecCCCCCccC----CCCCcccc------CCCChhhhccccEEEEecCCCChh---------HhHHHHHHHHH
Q 004502 434 NARCSVVAAANPIYGTYD----RSLTPTKN------IGLPDSLLSRFDLLFIVLDQMDPD---------IDRRISDHVLR 494 (748)
Q Consensus 434 ~~~~~iiaa~Np~~g~~~----~~~~~~~n------i~l~~~LlsRFdli~~~~d~~~~~---------~d~~ia~~il~ 494 (748)
|++|.+++||||+...+. ..|.+..+ -+|+.+|+||||+.+.+...+-.+ ....+...+..
T Consensus 324 pa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~ 403 (490)
T COG0606 324 PARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAK 403 (490)
T ss_pred eeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHH
Confidence 999999999999973332 23445543 379999999999999985433111 12233333333
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 004502 495 MHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEAS 574 (748)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~ 574 (748)
.+... ..|+.. .+ .+..++.+.|++|+ .++.++.
T Consensus 404 AR~~Q------------~~R~~~------------------------~~-~Na~l~~~~l~k~~---------~L~~~~~ 437 (490)
T COG0606 404 AREAQ------------IARAGR------------------------IG-INAELSEEALRKFC---------ALQREDA 437 (490)
T ss_pred HHHHH------------HHHhhc------------------------cC-cchhcCHHHHHHhc---------ccCHhHH
Confidence 22100 000000 01 25678888999977 5888888
Q ss_pred HHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 575 EQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 575 ~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
+.+...-.. ..+|.|.+..++|+|+++|.|.+++.|...|+.+|+.+-
T Consensus 438 ~~L~~al~~-------------~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 438 DLLKAALER-------------LGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred HHHHHHHHh-------------cchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhhh
Confidence 888875433 568899999999999999999999999999999999865
No 12
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.96 E-value=1e-27 Score=269.53 Aligned_cols=268 Identities=22% Similarity=0.323 Sum_probs=201.5
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE---Eec-cCCCCCcccce-
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI---STT-GRGSSGVGLTA- 371 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~---~~~-g~~~~~~glt~- 371 (748)
+|+|++.+++++.+++.|| + |++|+|+||+|||++++.++.++|+.- ... ....+.+|...
T Consensus 193 dv~Gq~~~~~al~~aa~~g---------~-----~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAAGG---------H-----NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred HhcCcHHHHhhhhhhccCC---------C-----EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 5799999999999999887 5 899999999999999999999887621 110 11111111110
Q ss_pred --------------ee-eecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 372 --------------AV-TSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 372 --------------~~-~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
+. .....+|.+..+||.+.+|++|+|||||++.+++..+..|+++||++.+++.+.|....++++
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred ccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 00 011124556789999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeecCCCC-CccCC---CCCccc------cCCCChhhhccccEEEEecCCCChh--------HhHHHHHHHHHhhhc
Q 004502 437 CSVVAAANPIY-GTYDR---SLTPTK------NIGLPDSLLSRFDLLFIVLDQMDPD--------IDRRISDHVLRMHRY 498 (748)
Q Consensus 437 ~~iiaa~Np~~-g~~~~---~~~~~~------ni~l~~~LlsRFdli~~~~d~~~~~--------~d~~ia~~il~~~~~ 498 (748)
|++|||+||++ |.|+. .|++.. +..++.+|+|||||++.+.+....+ ....+.++|...+..
T Consensus 339 frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~ 418 (499)
T TIGR00368 339 FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREI 418 (499)
T ss_pred eEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 99999999985 66653 355554 2479999999999999996543221 223344444443211
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004502 499 RSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIA 578 (748)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~ 578 (748)
. ..||... .....+..++...|++|+ .+++++.+.+.
T Consensus 419 q------------~~R~~~~----------------------~~~~~N~~l~~~~l~~~~---------~l~~~~~~~l~ 455 (499)
T TIGR00368 419 Q------------NIRYEKF----------------------ANINKNADLNSDEIEQFC---------KLSAIDANDLE 455 (499)
T ss_pred H------------HHHhcCC----------------------CCCcccccCCHHHHHhhc---------CCCHHHHHHHH
Confidence 0 0111100 000125678889999887 58999999999
Q ss_pred HHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 579 TTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 579 ~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
+.|.. ..+|.|...+++|+|+++|+|++++.|+.+|+.+|+.+
T Consensus 456 ~a~~~-------------~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 456 GALNK-------------LGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHh-------------cCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 98865 45799999999999999999999999999999999975
No 13
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.95 E-value=1.9e-27 Score=265.85 Aligned_cols=263 Identities=21% Similarity=0.324 Sum_probs=198.2
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc-----E------EeccCCCC
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA-----I------STTGRGSS 365 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~-----~------~~~g~~~~ 365 (748)
.++|+..+++++.+++.+| + |++|+|+||+|||++++.++.++|.. + .+.|....
T Consensus 192 ~v~Gq~~~~~al~laa~~G---------~-----~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~ 257 (506)
T PRK09862 192 DVIGQEQGKRGLEITAAGG---------H-----NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESV 257 (506)
T ss_pred EEECcHHHHhhhheeccCC---------c-----EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccc
Confidence 5789999999999999888 5 89999999999999999999998862 1 11222111
Q ss_pred Ccccceeee---------ecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 366 GVGLTAAVT---------SDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 366 ~~glt~~~~---------~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
..+++.-.. ....+|.+..+||.+.+|++|+|||||++.+++..+..|+++||++.++|.+.|...++|++
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~ 337 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPAR 337 (506)
T ss_pred cCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCC
Confidence 111210000 01235677889999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeecCCCC-CccCC-CCCcccc------CCCChhhhccccEEEEecCCCChhH----------hHHHHHHHHHhhhc
Q 004502 437 CSVVAAANPIY-GTYDR-SLTPTKN------IGLPDSLLSRFDLLFIVLDQMDPDI----------DRRISDHVLRMHRY 498 (748)
Q Consensus 437 ~~iiaa~Np~~-g~~~~-~~~~~~n------i~l~~~LlsRFdli~~~~d~~~~~~----------d~~ia~~il~~~~~ 498 (748)
|.+|||+||++ |.|.. .|.|... -.++.+||||||+.+.+... +.+. ...+.+.+.....
T Consensus 338 f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~-~~~~l~~~~~~~ess~~i~~rV~~ar~- 415 (506)
T PRK09862 338 FQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLP-PPGILSKTVVPGESSATVKQRVMAARE- 415 (506)
T ss_pred EEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCC-CHHHHhcccCCCCChHHHHHHHhhHHH-
Confidence 99999999985 66643 2544442 36999999999999999543 2221 1112222221100
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004502 499 RSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIA 578 (748)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~ 578 (748)
.+.+. .+..+..++...+++|+ .+++++...+.
T Consensus 416 ------------------------------------~q~~r--~~~~n~~l~~~~l~~~~---------~l~~~~~~~l~ 448 (506)
T PRK09862 416 ------------------------------------RQFKR--QNKLNAWLDSPEIRQFC---------KLESEDARWLE 448 (506)
T ss_pred ------------------------------------HHHHH--HHHHhcccCHHHHHHHh---------CCCHHHHHHHH
Confidence 00000 01124556778888887 58999999999
Q ss_pred HHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 579 TTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 579 ~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
..|.. ..+|+|...+++|+|+|+|.|++++.|+++|+.+|+.+.
T Consensus 449 ~~~~~-------------~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 449 ETLIH-------------LGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred HHHHH-------------cCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 88865 457899999999999999999999999999999999976
No 14
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.95 E-value=1.8e-26 Score=269.11 Aligned_cols=265 Identities=22% Similarity=0.284 Sum_probs=202.4
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEe---------------
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIST--------------- 359 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~--------------- 359 (748)
+..|+|++.+|++++++++.+ .. | ||||.|+||||||++++++++++|..-..
T Consensus 3 f~~ivGq~~~~~al~~~av~~---------~~-g--~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP---------RI-G--GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC---------CC-C--eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 357999999999999999964 11 1 79999999999999999999999731111
Q ss_pred --------------------ccCCCCCcccceee--eecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHH
Q 004502 360 --------------------TGRGSSGVGLTAAV--TSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVM 417 (748)
Q Consensus 360 --------------------~g~~~~~~glt~~~--~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~m 417 (748)
.....+...|.+.. ......|.+.+++|.+..|++|||||||++++++..++.|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 00111111122221 11113567788999999999999999999999999999999999
Q ss_pred hhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhh
Q 004502 418 EQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHR 497 (748)
Q Consensus 418 e~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~ 497 (748)
+++.+.+.+.|....+++++.+|||+||..| .++++|++||++.+.+.+..+.+.+..+..+.+....
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~eg------------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~ 218 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEEG------------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDA 218 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCCC------------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999765 3899999999999998776666666666665544221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcC-CCCCCHHHHHH
Q 004502 498 YRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRI-QPELTDEASEQ 576 (748)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~-~P~ls~ea~~~ 576 (748)
... .|.. ...-....++++|..|+... ...+++++.++
T Consensus 219 ~~~--------------------------~~~~---------------~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~ 257 (633)
T TIGR02442 219 DPE--------------------------AFAA---------------RWAAEQEELRNRIARARSLLPSVRISDSLIRF 257 (633)
T ss_pred CcH--------------------------HHHH---------------HhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 100 0000 00012346788999998754 24789999999
Q ss_pred HHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004502 577 IATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALN 636 (748)
Q Consensus 577 i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~ 636 (748)
|.+++..++. -++|....++|+|+|+|.|+++++|+++|+.+|+.++-
T Consensus 258 l~~~~~~~~i------------~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 258 ISELCIEFGV------------DGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHHHHHhCC------------CCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 9999987532 15799999999999999999999999999999999664
No 15
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.95 E-value=5.5e-26 Score=243.85 Aligned_cols=268 Identities=22% Similarity=0.295 Sum_probs=197.4
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccC-------------
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR------------- 362 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~------------- 362 (748)
..|+|++.+|+|++++++... .| |+||.|+||+|||++++.++.++|..-...+.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~----------~g--~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK----------IG--GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMC 71 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC----------CC--eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccC
Confidence 468999999999999998630 11 89999999999999999999999752100000
Q ss_pred ---------------------------CCCCcccceeeeec--ccccceeeccceEeeccCceeeecCCCcCChhhHHHH
Q 004502 363 ---------------------------GSSGVGLTAAVTSD--QETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAI 413 (748)
Q Consensus 363 ---------------------------~~~~~glt~~~~~~--~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L 413 (748)
+.+...+++...-+ ..+|++.+++|.+..|++|++||||++.+++..|..|
T Consensus 72 ~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 72 EEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred hHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHH
Confidence 00111233332211 2368899999999999999999999999999999999
Q ss_pred HHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 004502 414 HEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVL 493 (748)
Q Consensus 414 ~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il 493 (748)
+++|+++.+++.+.|....+++++.++|++||..| .++++|++||.+.+.+..+.+.+....+..+..
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg------------~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCCEEEEeccccccC------------CCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 99999999889999999999999999999999865 489999999999998855544344445544322
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcC-CCCCCHH
Q 004502 494 RMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRI-QPELTDE 572 (748)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~-~P~ls~e 572 (748)
....... .|.. ........+.+-|..||+.+ ...++++
T Consensus 220 ~~~~~~~--------------------------~~~~---------------~~~~e~~~~~~~I~~a~~~~~~V~v~d~ 258 (337)
T TIGR02030 220 EYDADPH--------------------------AFCE---------------KWQTEQEALQAKIVNAQNLLPQVTIPYD 258 (337)
T ss_pred hcccCch--------------------------hhhh---------------hhhhhhhcCHHHHHHHHHHhccCcCCHH
Confidence 1100000 0000 00000123455666666543 3468999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcc
Q 004502 573 ASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKE 643 (748)
Q Consensus 573 a~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~ 643 (748)
+.++|.+.+..+|.. ++|....++|.|+|+|.+++|+.|+++||..|+.+ +|.|+.
T Consensus 259 ~~~~i~~l~~~~~~~------------s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~---vL~HR~ 314 (337)
T TIGR02030 259 VLVKVAELCAELDVD------------GLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVL---ALRHRL 314 (337)
T ss_pred HHHHHHHHHHHHCCC------------CCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHHHhC
Confidence 999999999886521 57999999999999999999999999999999985 456653
No 16
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.94 E-value=1.7e-25 Score=239.38 Aligned_cols=267 Identities=21% Similarity=0.282 Sum_probs=193.5
Q ss_pred CcccChHHHHHHHHHHHh--CCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccC-----------
Q 004502 296 PSIYGHSWIKKAVILLML--GGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR----------- 362 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~--gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~----------- 362 (748)
..|+|++.+|++++++++ |+ + |+||.|+||||||+++|.+++++|..-...|.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~---------~-----~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~ 73 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGI---------G-----GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCP 73 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCC---------C-----cEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCc
Confidence 358999999999999875 42 2 89999999999999999999999852111110
Q ss_pred ----------------------CCCCcccceeeeec--ccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHh
Q 004502 363 ----------------------GSSGVGLTAAVTSD--QETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 363 ----------------------~~~~~glt~~~~~~--~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me 418 (748)
..+...++++..-+ ..+|++.+++|.+..|++|++||||++.++++.+..|+++|+
T Consensus 74 ~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~me 153 (334)
T PRK13407 74 EWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQ 153 (334)
T ss_pred ccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHH
Confidence 00111122221111 125788899999999999999999999999999999999999
Q ss_pred hceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhc
Q 004502 419 QQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRY 498 (748)
Q Consensus 419 ~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~ 498 (748)
++.+++.+.|....+++++.++||+||..+ .++++|++||.+.+.+..+.+.+....+..+.......
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e~------------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~ 221 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDAD 221 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCcccC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999754 38999999999999995555545545554432211000
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004502 499 RSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIA 578 (748)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~ 578 (748)
... +. ..+ ........+.+...-..++ ...+++++.++|.
T Consensus 222 ~~~-------------~~------------~~~------------~~~~~~~~~~i~~a~~~~~---~V~v~~~~~~yi~ 261 (334)
T PRK13407 222 HDA-------------FM------------AKW------------GAEDMQLRGRILGARARLP---QLKTPNTVLHDCA 261 (334)
T ss_pred chh-------------hh------------ccc------------cccccCCHHHHHHHHHhcC---CcccCHHHHHHHH
Confidence 000 00 000 0012233333433333222 3478999999999
Q ss_pred HHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcc
Q 004502 579 TTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKE 643 (748)
Q Consensus 579 ~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~ 643 (748)
+.....|.. ++|....++|.|+|+|.+++|+.|+++|+..+.. .++.|+.
T Consensus 262 ~l~~~~~~~------------s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~---~vl~hR~ 311 (334)
T PRK13407 262 ALCIALGSD------------GLRGELTLLRAARALAAFEGAEAVGRSHLRSVAT---MALSHRL 311 (334)
T ss_pred HHHHHHCCC------------CchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHH---Hhhhhhc
Confidence 999887643 5799999999999999999999999999998885 4556653
No 17
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.94 E-value=1.3e-25 Score=259.14 Aligned_cols=254 Identities=22% Similarity=0.306 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc--EEeccCCCCCcccceeee--ecc
Q 004502 302 SWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA--ISTTGRGSSGVGLTAAVT--SDQ 377 (748)
Q Consensus 302 ~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~--~~~~g~~~~~~glt~~~~--~~~ 377 (748)
+.+|+|++|.++.. ++ | ||||.|+||||||++++++++.+|+. +.......+...|.+.+. ...
T Consensus 1 ~~~~~Al~l~av~p---------~~-g--~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDP---------SL-G--GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCC---------Cc-c--eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 35899999999876 21 2 89999999999999999999999874 221111122223333321 112
Q ss_pred cccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCcc
Q 004502 378 ETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPT 457 (748)
Q Consensus 378 ~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~ 457 (748)
.+|.+.+++|.+..|++|++||||++++++..+..|+++|+++.+++.+.|....+|++|.+|||+||....
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~-------- 140 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG-------- 140 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--------
Confidence 367788999999999999999999999999999999999999999999999999999999999999998511
Q ss_pred ccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccc
Q 004502 458 KNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHG 537 (748)
Q Consensus 458 ~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (748)
..|+++|++||++.+.+.+.++.+....|..+.+.....
T Consensus 141 --g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~--------------------------------------- 179 (589)
T TIGR02031 141 --GGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVF--------------------------------------- 179 (589)
T ss_pred --CCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhh---------------------------------------
Confidence 159999999999999997777777667777765531100
Q ss_pred cccccCCcCCCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHH
Q 004502 538 KRTQRGQKRDTLTIQFLKKYIHYAKHRI-QPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAK 616 (748)
Q Consensus 538 ~~~~~~~~~~~l~~~~lrkyi~~ar~~~-~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Ak 616 (748)
....+...++++|.+||..+ ...+++++.++|.+++..++. .++|....++|+|+|+|.
T Consensus 180 --------~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv------------~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 180 --------RMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI------------SGHRADLFAVRAAKAHAA 239 (589)
T ss_pred --------hcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC------------CCccHHHHHHHHHHHHHH
Confidence 01123457889999999754 346899999999999976431 248999999999999999
Q ss_pred hcCCCCccHHHHHHHHHHHH
Q 004502 617 MKLNRKISKSDVEAALKALN 636 (748)
Q Consensus 617 l~~~~~V~~~Dv~~Ai~l~~ 636 (748)
|++++.|+++|+.+|+.++-
T Consensus 240 l~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 240 LHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HhCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999663
No 18
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.94 E-value=2.1e-25 Score=238.92 Aligned_cols=269 Identities=20% Similarity=0.282 Sum_probs=195.0
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccC-------------
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR------------- 362 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~------------- 362 (748)
..|+|++.+|+|++++++.. .+. ++||.|++|||||+++|.++++++..-...+.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p---------~~~---~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP---------KIG---GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred HHHhChHHHHHHHHHhccCC---------CCC---eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 35899999999999999864 121 69999999999999999999998752111100
Q ss_pred ---------------------------CCCCcccceee--eecccccceeeccceEeeccCceeeecCCCcCChhhHHHH
Q 004502 363 ---------------------------GSSGVGLTAAV--TSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAI 413 (748)
Q Consensus 363 ---------------------------~~~~~glt~~~--~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L 413 (748)
+.+...+.+++ .+...+|.+.+++|.+..|++|++||||++.+++..|..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 00001111110 0111356677889999999999999999999999999999
Q ss_pred HHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 004502 414 HEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVL 493 (748)
Q Consensus 414 ~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il 493 (748)
+++|+++.+++.+.|....+++++.++||+||..| .++++|++||.+.+.+..+.+.+.+.+|..+..
T Consensus 165 Leam~e~~~~ier~G~s~~~p~rfiviaT~np~eg------------~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC------------CCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 99999999999999999999999999999999865 389999999999999955544566666655432
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004502 494 RMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEA 573 (748)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea 573 (748)
....... . +...+ ........+.+...-..++ ...++++.
T Consensus 233 ~~~~~~~------~-------------------~~~~~------------~~~~~~~~~~I~~ar~~~~---~V~v~~~~ 272 (350)
T CHL00081 233 SFDKNPQ------E-------------------FREKY------------EESQEELRSKIVAAQNLLP---KVEIDYDL 272 (350)
T ss_pred ccccChh------h-------------------hhhhh------------ccccccCHHHHHHHHHhcC---CCccCHHH
Confidence 2100000 0 00000 0011123333333332222 35789999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcc
Q 004502 574 SEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKE 643 (748)
Q Consensus 574 ~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~ 643 (748)
.++|.+....+|. .++|....++|.|+|+|.|++|+.|+++||..|..+ +|.|+.
T Consensus 273 ~~yi~~l~~~~~~------------~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~---vL~HR~ 327 (350)
T CHL00081 273 RVKISQICSELDV------------DGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITL---CLRHRL 327 (350)
T ss_pred HHHHHHHHHHHCC------------CCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHHHhC
Confidence 9999999988754 268999999999999999999999999999999984 566663
No 19
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.94 E-value=1.1e-26 Score=228.92 Aligned_cols=168 Identities=29% Similarity=0.419 Sum_probs=101.3
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEec----cCCCCCcc---
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT----GRGSSGVG--- 368 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~----g~~~~~~g--- 368 (748)
.+|.||+.+|+|++++++|+ | |+||+|+||||||++++.+..++|..-... ....+.+|
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~---------h-----~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG---------H-----HLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hhhcCcHHHHHHHHHHHcCC---------C-----CeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 57999999999999999998 6 999999999999999999999999822110 00111111
Q ss_pred ---ccee---------ee-ecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecc
Q 004502 369 ---LTAA---------VT-SDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA 435 (748)
Q Consensus 369 ---lt~~---------~~-~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~ 435 (748)
+... +. ....+|....+||.+.+||+||+|+||+..+++.++++|+++||++.+++.++|...++|+
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa 148 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPA 148 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB-
T ss_pred CCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEec
Confidence 1110 00 1112345578999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeeecCCCC-CccC---CCCCcccc------CCCChhhhccccEEEEec
Q 004502 436 RCSVVAAANPIY-GTYD---RSLTPTKN------IGLPDSLLSRFDLLFIVL 477 (748)
Q Consensus 436 ~~~iiaa~Np~~-g~~~---~~~~~~~n------i~l~~~LlsRFdli~~~~ 477 (748)
+|.++||+||++ |.|. ..|.+... -+++.+|+||||+.+.+.
T Consensus 149 ~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~ 200 (206)
T PF01078_consen 149 RFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVP 200 (206)
T ss_dssp -EEEEEEE-S------------------------------------------
T ss_pred ccEEEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999997 3332 44555543 379999999999999884
No 20
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.91 E-value=5.2e-23 Score=219.09 Aligned_cols=266 Identities=23% Similarity=0.297 Sum_probs=201.2
Q ss_pred cccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCC--------
Q 004502 293 SLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGS-------- 364 (748)
Q Consensus 293 si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~-------- 364 (748)
..+..++|++.+|.||++..+-. .+. .+||-|+.|||||+++|+++.++|....+.|...
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P---------~ig---gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP---------QIG---GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc---------ccc---eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 45567999999999999997643 122 5999999999999999999999998543333210
Q ss_pred -----------------------CCcc---------cceee--eecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 365 -----------------------SGVG---------LTAAV--TSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 365 -----------------------~~~g---------lt~~~--~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
..++ +.+++ .+....|...++||.|..||+||+++||++.+++..+
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 0011 11111 1112347788999999999999999999999999999
Q ss_pred HHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHH
Q 004502 411 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISD 490 (748)
Q Consensus 411 ~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~ 490 (748)
+.|+.+++.|...+.+.|+..++|++|.+||||||..| .|.++|+|||.+.+.+..+.+.+....|..
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc------------ccchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 99999999998888899999999999999999999977 499999999999999977777777777777
Q ss_pred HHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhc-CCCCC
Q 004502 491 HVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHR-IQPEL 569 (748)
Q Consensus 491 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~-~~P~l 569 (748)
..+.... .+ ..+...+.. ....||.-+.-||+. ....+
T Consensus 230 r~~~f~~--~P-----------------------e~f~~~~~~----------------~~~~lR~~ii~ar~~l~~V~l 268 (423)
T COG1239 230 RRLAFEA--VP-----------------------EAFLEKYAD----------------AQRALRARIIAARSLLSEVEL 268 (423)
T ss_pred HHHHhhc--Cc-----------------------HHHHHHHHH----------------HHHHHHHHHHHHHhccccccC
Confidence 6655411 00 001111110 124566666667764 24567
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 570 TDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 570 s~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
++++...|.+....+--. +.|.-..+.|.|.|+|.++++.+|+.+|+.+|..|.
T Consensus 269 ~~~~~~~ia~~~~~~~v~------------g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 269 DDDAETKIAELCARLAVD------------GHRADIVVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred cHHHHHHHHHHHHHhccC------------CCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 788888888776653211 258888999999999999999999999999999876
No 21
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.90 E-value=4.8e-22 Score=218.41 Aligned_cols=271 Identities=18% Similarity=0.194 Sum_probs=190.9
Q ss_pred HHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc---EEeccC
Q 004502 286 TFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGR 362 (748)
Q Consensus 286 ~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~ 362 (748)
.+..|...+...|+|++++.+.+++++..| . ||||.||||||||++|+++++.+.+. .+....
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag---------~-----hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ 75 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSG---------E-----SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 75 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccC---------C-----CEEEECCCChhHHHHHHHHHHHhcccCcceeeeee
Confidence 356788899999999999777666666554 2 99999999999999999999987652 122222
Q ss_pred CCCCcccceee-eec-ccccce-eeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeE
Q 004502 363 GSSGVGLTAAV-TSD-QETGER-RLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSV 439 (748)
Q Consensus 363 ~~~~~glt~~~-~~~-~~~g~~-~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~i 439 (748)
.++..++++.. ... ...|.+ ...+|.+..++ ++|+|||+++++..+++|+++|+++.+++ +|....+|.++.+
T Consensus 76 fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv 151 (498)
T PRK13531 76 FSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLV 151 (498)
T ss_pred ecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEE
Confidence 22333554432 121 124554 25677776666 99999999999999999999999999886 5778899988888
Q ss_pred eeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCC-hhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 004502 440 VAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMD-PDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGRE 518 (748)
Q Consensus 440 iaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~-~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (748)
+|+ ||.+.. -.+.+++++||-+.+.+ ++++ .+....+ +..+..... ..
T Consensus 152 ~AT-N~LPE~----------g~~leAL~DRFliri~v-p~l~~~~~e~~l----L~~~~~~~~-----~~---------- 200 (498)
T PRK13531 152 TAS-NELPEA----------DSSLEALYDRMLIRLWL-DKVQDKANFRSM----LTSQQDEND-----NP---------- 200 (498)
T ss_pred EEC-CCCccc----------CCchHHhHhhEEEEEEC-CCCCchHHHHHH----HHccccccc-----CC----------
Confidence 887 875420 03567999999555555 6664 3332333 221110000 00
Q ss_pred CccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcc
Q 004502 519 DEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLP 598 (748)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~ 598 (748)
......++.+.+......+++ ..++++..++|.+.-..+|.... ...
T Consensus 201 ------------------------~~~~~vis~eel~~lq~~v~~---V~v~d~v~eyI~~L~~~lr~~r~------~~~ 247 (498)
T PRK13531 201 ------------------------VPASLQITDEEYQQWQKEIGK---ITLPDHVFELIFQLRQQLDALPN------APY 247 (498)
T ss_pred ------------------------CcccCCCCHHHHHHHHHHhcc---eeCCHHHHHHHHHHHHHHhcCCC------CCC
Confidence 001245788888888777765 36799999999888877775431 134
Q ss_pred cChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhc
Q 004502 599 ITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHK 642 (748)
Q Consensus 599 ~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~ 642 (748)
+|+|....++++++|+|-+++|+.|+++|+.- +..+|.|+
T Consensus 248 ~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~l----l~~vL~HR 287 (498)
T PRK13531 248 VSDRRWKKAIRLLQASAFFSGRDAIAPIDLIL----LKDCLWHD 287 (498)
T ss_pred cCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHH----hHHHhccC
Confidence 89999999999999999999999999999993 33566665
No 22
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.89 E-value=3.4e-22 Score=228.39 Aligned_cols=237 Identities=17% Similarity=0.217 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC--cEEeccCCCCCcccceee--eec
Q 004502 301 HSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL--AISTTGRGSSGVGLTAAV--TSD 376 (748)
Q Consensus 301 ~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~--~~~~~g~~~~~~glt~~~--~~~ 376 (748)
++.+|.|++|..+... + +. .|||.|++|||||++++.++.++|. ++..-..+.+...|.+.. ...
T Consensus 8 ~~~~~~Al~l~av~p~------~--~g---Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPA------G--LG---GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCcc------c--cc---eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 7889999999988541 1 22 5999999999999999999999987 333333333333333321 011
Q ss_pred ccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCc
Q 004502 377 QETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTP 456 (748)
Q Consensus 377 ~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~ 456 (748)
...|...++||.+.+||+|||||||++.+++..+++|+++|++|.++|.++|.+.++|++|.+||+.|+....+
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~------ 150 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDE------ 150 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhccc------
Confidence 13566678999999999999999999999999999999999999999999999999999999999987752122
Q ss_pred cccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhcc
Q 004502 457 TKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLH 536 (748)
Q Consensus 457 ~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (748)
.||++|+|||+|.+.+......+.. . .
T Consensus 151 ----~L~~~lLDRf~l~v~v~~~~~~~~~--------~------~----------------------------------- 177 (584)
T PRK13406 151 ----RAPAALADRLAFHLDLDGLALRDAR--------E------I----------------------------------- 177 (584)
T ss_pred ----CCCHHhHhheEEEEEcCCCChHHhc--------c------c-----------------------------------
Confidence 6999999999999998443332210 0 0
Q ss_pred ccccccCCcCCCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCccc-ChhhhhhHHHHHHHH
Q 004502 537 GKRTQRGQKRDTLTIQFLKKYIHYAKHR-IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPI-TARTLETIIRLSTAH 614 (748)
Q Consensus 537 ~~~~~~~~~~~~l~~~~lrkyi~~ar~~-~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~-t~R~LesliRla~A~ 614 (748)
..+.+ -|.-||.. -+..++++..+++.+.+.. ..+ |.|....++|+|+|+
T Consensus 178 -----------~~~~~----~I~~AR~rl~~v~v~~~~l~~i~~~~~~-------------~gv~S~Ra~i~llraARa~ 229 (584)
T PRK13406 178 -----------PIDAD----DIAAARARLPAVGPPPEAIAALCAAAAA-------------LGIASLRAPLLALRAARAA 229 (584)
T ss_pred -----------CCCHH----HHHHHHHHHccCCCCHHHHHHHHHHHHH-------------hCCCCcCHHHHHHHHHHHH
Confidence 00011 11112211 1346788888888777754 344 899999999999999
Q ss_pred HHhcCCCCccHHHHHHHHHHH
Q 004502 615 AKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 615 Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
|.|++++.|+.+||.+|+.++
T Consensus 230 AaL~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 230 AALAGRTAVEEEDLALAARLV 250 (584)
T ss_pred HHHcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999865
No 23
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=196.45 Aligned_cols=273 Identities=24% Similarity=0.297 Sum_probs=196.8
Q ss_pred HHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEec-c-CCC
Q 004502 287 FDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT-G-RGS 364 (748)
Q Consensus 287 ~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-g-~~~ 364 (748)
...+...+.+.++|.+.+..++++++..| . |+||.|+||||||++++.+++.+...+... . ...
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~---------~-----~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAG---------G-----HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcC---------C-----CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 34566778888999999888888777655 2 999999999999999999999998754322 1 122
Q ss_pred CCcccceeeeeccc---ccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeecccee-EEeccceeEe
Q 004502 365 SGVGLTAAVTSDQE---TGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIH-ASLNARCSVV 440 (748)
Q Consensus 365 ~~~glt~~~~~~~~---~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~-~~l~~~~~ii 440 (748)
...++++....... .+.+.+.+|.+..+.++++++|||++.+++.+++|+++|+++.+++. +.. ..++..+.++
T Consensus 81 ~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~--~~~~~~~~~~f~vi 158 (329)
T COG0714 81 LPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVP--GLTTIRLPPPFIVI 158 (329)
T ss_pred CHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEEC--CcCCcCCCCCCEEE
Confidence 23344444433333 66788889999988779999999999999999999999999998887 444 7888999999
Q ss_pred eecCCCC--CccCCCCCccccCCCChhhhccccEEEEecCCCChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 004502 441 AAANPIY--GTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGR 517 (748)
Q Consensus 441 aa~Np~~--g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~ 517 (748)
||+||.+ |.+ .+|+++++||.+.+.+ ++|+.+... .+..+... ... .
T Consensus 159 aT~Np~e~~g~~----------~l~eA~ldRf~~~~~v-~yp~~~~e~~~i~~~~~~----~~~---------------~ 208 (329)
T COG0714 159 ATQNPGEYEGTY----------PLPEALLDRFLLRIYV-DYPDSEEEERIILARVGG----VDE---------------L 208 (329)
T ss_pred EccCccccCCCc----------CCCHHHHhhEEEEEec-CCCCchHHHHHHHHhCcc----ccc---------------c
Confidence 9999864 554 7999999999776666 667444332 22221110 000 0
Q ss_pred CCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCc
Q 004502 518 EDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTL 597 (748)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~ 597 (748)
. ......+.++...+.++-...+ ...+++++.+++.......|.... ...
T Consensus 209 ~----------------------~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~-----~~~ 258 (329)
T COG0714 209 D----------------------LESLVKPVLSDEELLRLQKEVK---KVPVSDEVIDYIVTLVAALREAPD-----VAL 258 (329)
T ss_pred c----------------------cchhhhhhhCHHHHHHHHhhhc---cCCchHHHHHHHHHHHHhhccccc-----hhc
Confidence 0 0000123344433333332222 357889999999988888775532 236
Q ss_pred ccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 598 PITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 598 ~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
.+++|....++..+++.|.+.++..+.++|+.......
T Consensus 259 ~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~ 296 (329)
T COG0714 259 GASPRASLALLAALRALALLDGRDAVIPDDVKALAEPA 296 (329)
T ss_pred cCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhh
Confidence 67899999999999999999999999999998877644
No 24
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.80 E-value=3.8e-18 Score=197.46 Aligned_cols=173 Identities=23% Similarity=0.256 Sum_probs=131.6
Q ss_pred eeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeecc-----ce---eEEeccceeEeeecCCCCCccCCCC
Q 004502 383 RLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKA-----GI---HASLNARCSVVAAANPIYGTYDRSL 454 (748)
Q Consensus 383 ~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~-----g~---~~~l~~~~~iiaa~Np~~g~~~~~~ 454 (748)
.+++|.+..|++|++||||++.|++..|..|+++|+++++.+... +. ....|+++.+|+++||....
T Consensus 207 ~i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~----- 281 (608)
T TIGR00764 207 RVEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLE----- 281 (608)
T ss_pred cCCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHh-----
Confidence 357999999999999999999999999999999999999887543 11 23467899999999986321
Q ss_pred CccccCCCChhhhcccc---EEEEecCC--CChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHH
Q 004502 455 TPTKNIGLPDSLLSRFD---LLFIVLDQ--MDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFV 529 (748)
Q Consensus 455 ~~~~ni~l~~~LlsRFd---li~~~~d~--~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (748)
.+.++|++||+ +.+.+.+. .+.+....++.++..
T Consensus 282 ------~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~----------------------------------- 320 (608)
T TIGR00764 282 ------GMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQ----------------------------------- 320 (608)
T ss_pred ------hcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHH-----------------------------------
Confidence 58999999999 66655332 223333233333222
Q ss_pred hhhhhccccccccCCcCCCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHH
Q 004502 530 KYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHR-IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETII 608 (748)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~-~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~Lesli 608 (748)
.++++ ..|.++++|.+.|.++|..+ .+. ...++++.|++..++
T Consensus 321 ------------------------------~~~r~G~l~~~s~~Av~~Li~~~~R~--ag~----r~~lsl~~R~L~~ll 364 (608)
T TIGR00764 321 ------------------------------EVKKDGRIPHFTRDAVEEIVREAQRR--AGR----KDHLTLRLRELGGLV 364 (608)
T ss_pred ------------------------------HHHHhCCCCcCCHHHHHHHHHHHHHH--Hhc----ccccCCCHHHHHHHH
Confidence 12222 35679999999999988654 211 234889999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004502 609 RLSTAHAKMKLNRKISKSDVEAALKALNF 637 (748)
Q Consensus 609 Rla~A~Akl~~~~~V~~~Dv~~Ai~l~~~ 637 (748)
|.|.+.|+.+.++.|+.+||.+|++...+
T Consensus 365 R~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 365 RAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 99999999999999999999999998765
No 25
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.78 E-value=5.6e-19 Score=160.26 Aligned_cols=126 Identities=29% Similarity=0.430 Sum_probs=88.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec-cCC-CCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT-GRG-SSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQ 408 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-g~~-~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~ 408 (748)
||||.|.||+|||++++++++.+...+.-. ... -...++++..+.+..++++.+.+|.+. .+|+++|||++.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCHH
Confidence 899999999999999999999998765321 111 123456666677766788888888887 579999999999999
Q ss_pred hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC--CccCCCCCccccCCCChhhhcccc
Q 004502 409 DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY--GTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 409 ~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~--g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
.|++|+++|+++++++. |....+|..+.||||.||.. |.| .||.+++|||-
T Consensus 78 tQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp~e~~Gty----------~Lpea~~DRF~ 130 (131)
T PF07726_consen 78 TQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNPVEQEGTY----------PLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-TT--S----------------HHHHTTSS
T ss_pred HHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCccccCcee----------cCCHHHhcccc
Confidence 99999999999999876 88999999999999999964 666 89999999994
No 26
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.77 E-value=3.6e-17 Score=172.89 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=110.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEecc--CCCCCcccceeeeeccccc--ceeeccceEeec--cCceeeecCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTG--RGSSGVGLTAAVTSDQETG--ERRLEAGAMVLA--DRGVVCIDEFDK 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g--~~~~~~glt~~~~~~~~~g--~~~~~~G~l~la--~~gil~IDEidk 404 (748)
||||.|+||||||++++.+++.+...+.... ...+..++++........| ...+..|.+..| +++++++||+|.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~ 145 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA 145 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence 8999999999999999999999988654321 1122334444322211122 245678888765 577899999999
Q ss_pred CChhhHHHHHHHHh-hceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChh
Q 004502 405 MNDQDRVAIHEVME-QQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPD 483 (748)
Q Consensus 405 ~~~~~~~~L~e~me-~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~ 483 (748)
++++++..|+.+|| .+.+++...+....-+..|.+|||+||.... |..--......++.+++|||-+++.+ ++++.+
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G-d~~G~y~Gt~~l~~A~lDRF~i~~~~-~Yp~~e 223 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG-DTTGLYHGTQQINQAQMDRWSIVTTL-NYLEHD 223 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC-CCCcceeeeecCCHHHHhheeeEeeC-CCCCHH
Confidence 99999999999999 4688887656555555689999999996410 11001122237999999999555555 888877
Q ss_pred HhHHHH
Q 004502 484 IDRRIS 489 (748)
Q Consensus 484 ~d~~ia 489 (748)
....|.
T Consensus 224 ~E~~Il 229 (327)
T TIGR01650 224 NEAAIV 229 (327)
T ss_pred HHHHHH
Confidence 666553
No 27
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.76 E-value=4e-17 Score=171.26 Aligned_cols=208 Identities=14% Similarity=0.226 Sum_probs=141.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe-ccCCC-CCcccceeee----------------ecccccceeeccceEee-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST-TGRGS-SGVGLTAAVT----------------SDQETGERRLEAGAMVL- 391 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~-~g~~~-~~~glt~~~~----------------~~~~~g~~~~~~G~l~l- 391 (748)
|+||.||||||||++++++++.++..+.. ++... ....+.+... +........+.+|.+..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 89999999999999999999988765432 22211 1112211110 00001122345777765
Q ss_pred -ccCceeeecCCCcCChhhHHHHHHHHhhceEEeecc---ceeEEeccceeEeeecCCCC--CccCCCCCccccCCCChh
Q 004502 392 -ADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKA---GIHASLNARCSVVAAANPIY--GTYDRSLTPTKNIGLPDS 465 (748)
Q Consensus 392 -a~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~---g~~~~l~~~~~iiaa~Np~~--g~~~~~~~~~~ni~l~~~ 465 (748)
+.+++|+|||+++++++.++.|+++|+++.+++... +.....+.+|.+|+|+||.. |.+ .++++
T Consensus 103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~----------~l~~a 172 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH----------ETQDA 172 (262)
T ss_pred HHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee----------cccHH
Confidence 478999999999999999999999999999887532 23455677999999999963 333 57999
Q ss_pred hhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCc
Q 004502 466 LLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQK 545 (748)
Q Consensus 466 LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (748)
|++|| ..+.+ +.|+.+....|...
T Consensus 173 L~~R~-~~i~i-~~P~~~~e~~Il~~------------------------------------------------------ 196 (262)
T TIGR02640 173 LLDRL-ITIFM-DYPDIDTETAILRA------------------------------------------------------ 196 (262)
T ss_pred HHhhc-EEEEC-CCCCHHHHHHHHHH------------------------------------------------------
Confidence 99999 55555 66776655443211
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccH
Q 004502 546 RDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISK 625 (748)
Q Consensus 546 ~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~ 625 (748)
.. .++++..+.+.+.+..+|..+. ....++|++..+.|.+ +.+.++..|++
T Consensus 197 -----------~~---------~~~~~~~~~iv~~~~~~R~~~~------~~~~~~r~~i~~~~~~---~~~~~~~~~~~ 247 (262)
T TIGR02640 197 -----------KT---------DVAEDSAATIVRLVREFRASGD------EITSGLRASLMIAEVA---TQQDIPVDVDD 247 (262)
T ss_pred -----------hh---------CCCHHHHHHHHHHHHHHHhhCC------ccCCcHHHHHHHHHHH---HHcCCCCCCCc
Confidence 10 2466777888889999993221 2455688776555555 45577999999
Q ss_pred HHHHHHHH
Q 004502 626 SDVEAALK 633 (748)
Q Consensus 626 ~Dv~~Ai~ 633 (748)
+|+.....
T Consensus 248 ~~~~~~~~ 255 (262)
T TIGR02640 248 EDFVDLCI 255 (262)
T ss_pred HHHHHHHH
Confidence 99987754
No 28
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.8e-16 Score=160.02 Aligned_cols=214 Identities=20% Similarity=0.295 Sum_probs=155.0
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcc--cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDI--NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVT 374 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i--~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~ 374 (748)
+.+|++.+|..+-+.+-+. +.|+.. |+||+||||.|||+||..+|+.++..+.++...
T Consensus 27 efiGQ~~vk~~L~ifI~AA---------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp----------- 86 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAA---------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP----------- 86 (332)
T ss_pred HhcChHHHHHHHHHHHHHH---------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc-----------
Confidence 5789999999988887654 222222 999999999999999999999998766543211
Q ss_pred ecccccceeeccceE-----eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeec--c--ceeEEec-cceeEeeecC
Q 004502 375 SDQETGERRLEAGAM-----VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAK--A--GIHASLN-ARCSVVAAAN 444 (748)
Q Consensus 375 ~~~~~g~~~~~~G~l-----~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k--~--g~~~~l~-~~~~iiaa~N 444 (748)
..-+||.+ .+..+-|+|||||+++++.+-+.|+.+||+-.+-|-- . -.+..++ +.|++|+|+.
T Consensus 87 -------~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 87 -------ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -------cccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 11122222 2335679999999999999999999999998776532 1 1122222 3699999987
Q ss_pred CCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccc
Q 004502 445 PIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTD 524 (748)
Q Consensus 445 p~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (748)
... .|+.||.+||.++..+ +..+.+
T Consensus 160 r~G-------------~lt~PLrdRFGi~~rl-efY~~~----------------------------------------- 184 (332)
T COG2255 160 RAG-------------MLTNPLRDRFGIIQRL-EFYTVE----------------------------------------- 184 (332)
T ss_pred ccc-------------cccchhHHhcCCeeee-ecCCHH-----------------------------------------
Confidence 754 5999999999999888 222222
Q ss_pred hhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhh
Q 004502 525 ASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTL 604 (748)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~L 604 (748)
+|.+.+.-+-..+.-.+++++...|.... .-|||-.
T Consensus 185 ----------------------------eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS----------------RGTPRIA 220 (332)
T COG2255 185 ----------------------------ELEEIVKRSAKILGIEIDEEAALEIARRS----------------RGTPRIA 220 (332)
T ss_pred ----------------------------HHHHHHHHHHHHhCCCCChHHHHHHHHhc----------------cCCcHHH
Confidence 23333322222355678888887776532 3489999
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004502 605 ETIIRLSTAHAKMKLNRKISKSDVEAALKALN 636 (748)
Q Consensus 605 esliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~ 636 (748)
..|+|--+-.|..+....|+.+=+..|+..+.
T Consensus 221 nRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 221 NRLLRRVRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 99999999999999999999999999987664
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.73 E-value=2.5e-17 Score=163.61 Aligned_cols=148 Identities=22% Similarity=0.340 Sum_probs=91.4
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEec-cCCCCCcccceee
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT-GRGSSGVGLTAAV 373 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-g~~~~~~glt~~~ 373 (748)
..+++||+.++..+-+.+-.. +...+... |+||+||||+|||+||+.+|+.+...+..+ |......+-.+..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa--~~r~~~l~-----h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAA--KKRGEALD-----HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHH--HCTTS--------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHH--HhcCCCcc-----eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHH
Confidence 346999999987655443321 00011123 999999999999999999999998876443 2111111100000
Q ss_pred eecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEee-ccc---eeEEec-cceeEeeecCCCCC
Q 004502 374 TSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIA-KAG---IHASLN-ARCSVVAAANPIYG 448 (748)
Q Consensus 374 ~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~-k~g---~~~~l~-~~~~iiaa~Np~~g 448 (748)
...+..+-|+|||||+++++.++..|+.+||++.+.+- ..| .+..++ .+|++|+|++...
T Consensus 96 --------------l~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g- 160 (233)
T PF05496_consen 96 --------------LTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG- 160 (233)
T ss_dssp --------------HHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-
T ss_pred --------------HHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-
Confidence 00123567999999999999999999999999998652 223 123332 3799999998864
Q ss_pred ccCCCCCccccCCCChhhhccccEEEEe
Q 004502 449 TYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 449 ~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.|++||.+||.+++.+
T Consensus 161 ------------~ls~pLrdRFgi~~~l 176 (233)
T PF05496_consen 161 ------------LLSSPLRDRFGIVLRL 176 (233)
T ss_dssp ------------CTSHCCCTTSSEEEE-
T ss_pred ------------ccchhHHhhcceecch
Confidence 5999999999998887
No 30
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.70 E-value=1.7e-17 Score=153.26 Aligned_cols=109 Identities=34% Similarity=0.532 Sum_probs=88.3
Q ss_pred HHHHHHHHhcch----hhHHHHHHHHHcCCcEEEEechhHhhhCCChHHHHhhCHHHHHHHHHHHHHHHHHhhC------
Q 004502 11 RKREFYDFLELS----IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNID------ 80 (748)
Q Consensus 11 ~~~~f~~Fl~~~----~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~~------ 80 (748)
+++.|.+||+++ +|+++|++++..+.++|.|||+||.+|+++||+.|+++|.+++++|++|+.+++....
T Consensus 1 i~~~F~~Fl~~f~~~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~ 80 (121)
T PF14551_consen 1 IKRRFREFLREFKEEPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFPSEQQS 80 (121)
T ss_dssp --HHHHHHCCCH-TS-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT-------
T ss_pred ChHHHHHHHHcCCCchHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 468999999875 7999999999999999999999999999999999999999999999999999998642
Q ss_pred --cccccCCceEEEEeeCCCcccccccccCCccCCCcEEEEEE
Q 004502 81 --PKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEG 121 (748)
Q Consensus 81 --~~~~~~~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~G 121 (748)
+........++|++.+.+ ...++|+|+|++||+||+|+|
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~--~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 81 SFPPELKRRKEIQVRFYNLP--KSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp ---GCCTTTS--EEEEES-S---EE-GGG-SGGGTTSEEEEEE
T ss_pred CCchhhccceeEEEEEcCCC--CCcCcCCCChHHCCCEEEEeC
Confidence 233333456899999984 678899999999999999999
No 31
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=9.3e-16 Score=175.76 Aligned_cols=224 Identities=22% Similarity=0.255 Sum_probs=151.9
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC----------cEE-eccCC--
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL----------AIS-TTGRG-- 363 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~----------~~~-~~g~~-- 363 (748)
+++|++...+++..++++.. ..|+||+||||||||++|+++++.+.+ .+. .....
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~ 133 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR 133 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence 69999998888887776651 128999999999999999999875321 111 11100
Q ss_pred CCCccc----ceeeeecc---------cccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccce-
Q 004502 364 SSGVGL----TAAVTSDQ---------ETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGI- 429 (748)
Q Consensus 364 ~~~~gl----t~~~~~~~---------~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~- 429 (748)
....++ .... .++ ..|.....+|.+..|++|++||||++.|++..++.|+.+||++.+.+..+..
T Consensus 134 ~~~~~~~~~li~~~-~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~ 212 (531)
T TIGR02902 134 FDERGIADPLIGSV-HDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYN 212 (531)
T ss_pred CCccccchhhcCCc-ccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccc
Confidence 000011 1100 000 1122334678889999999999999999999999999999999876642100
Q ss_pred --------------eEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHh
Q 004502 430 --------------HASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRM 495 (748)
Q Consensus 430 --------------~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~ 495 (748)
...+++++.+|+|+|.... .++++|.+|+..++ + .+...+.-..++++.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~------------~L~paLrsR~~~I~-f-~pL~~eei~~Il~~~a~- 277 (531)
T TIGR02902 213 SENPNIPSHIHDIFQNGLPADFRLIGATTRNPE------------EIPPALRSRCVEIF-F-RPLLDEEIKEIAKNAAE- 277 (531)
T ss_pred ccCcccccchhhhcccCcccceEEEEEecCCcc------------cCChHHhhhhheee-C-CCCCHHHHHHHHHHHHH-
Confidence 1346788999988776432 48999999985443 3 22333322333332221
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004502 496 HRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASE 575 (748)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~ 575 (748)
.....+++++.+
T Consensus 278 --------------------------------------------------------------------k~~i~is~~al~ 289 (531)
T TIGR02902 278 --------------------------------------------------------------------KIGINLEKHALE 289 (531)
T ss_pred --------------------------------------------------------------------HcCCCcCHHHHH
Confidence 123468888888
Q ss_pred HHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 576 QIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 576 ~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
.|..+. + +.|++.++++.|...|..+.+..|+.+|+.+++.
T Consensus 290 ~I~~y~---------------~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 290 LIVKYA---------------S--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHhh---------------h--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 776532 1 4699999999999999888888999999999976
No 32
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.64 E-value=1.1e-14 Score=168.14 Aligned_cols=166 Identities=22% Similarity=0.266 Sum_probs=124.0
Q ss_pred eccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeecc----ce----eEEeccceeEeeecCCCCCccCCCCC
Q 004502 384 LEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKA----GI----HASLNARCSVVAAANPIYGTYDRSLT 455 (748)
Q Consensus 384 ~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~----g~----~~~l~~~~~iiaa~Np~~g~~~~~~~ 455 (748)
+++|.+..|++|++||||++.|++..+..|+++|+++.+.+... +. ....|+++.+|+++|+..-.
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~------ 290 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALE------ 290 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHH------
Confidence 48999999999999999999999999999999999999877421 11 34567899999999995211
Q ss_pred ccccCCCChhhhcccc---EEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhh
Q 004502 456 PTKNIGLPDSLLSRFD---LLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYN 532 (748)
Q Consensus 456 ~~~ni~l~~~LlsRFd---li~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (748)
.+.+.|.+||. +.+.+.+..
T Consensus 291 -----~~dpdL~~rfk~~~v~v~f~~~~---------------------------------------------------- 313 (637)
T PRK13765 291 -----NMHPALRSRIKGYGYEVYMRDTM---------------------------------------------------- 313 (637)
T ss_pred -----hhhHHHHHHhccCeEEEEccccc----------------------------------------------------
Confidence 36888999986 333331111
Q ss_pred hhccccccccCCcCCCCCHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhH
Q 004502 533 RMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHR-----IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETI 607 (748)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~-----~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~Lesl 607 (748)
.-+.+..++|+.++.+. -.|.++++|...|.++|..+-.. .....+..|++..|
T Consensus 314 ---------------~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~------r~~lsl~~~~l~~l 372 (637)
T PRK13765 314 ---------------EDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGR------KGHLTLKLRDLGGL 372 (637)
T ss_pred ---------------CCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCC------ccccccCHHHHHHH
Confidence 01233445555543322 35679999999999999754221 12256678999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 608 IRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 608 iRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
+|.|-..|+...++.|+.+||..|+.
T Consensus 373 ~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 373 VRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHHHhhccceecHHHHHHHHH
Confidence 99999999999999999999999984
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=6.1e-14 Score=152.31 Aligned_cols=219 Identities=20% Similarity=0.254 Sum_probs=143.2
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEec-cCCCCCcccceeee
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT-GRGSSGVGLTAAVT 374 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-g~~~~~~glt~~~~ 374 (748)
.+++|++.+++.+...+..... .....+ |+||+||||+|||++++++++.+...+... +.....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~--~~~~~~-----~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-------- 89 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK--RGEALD-----HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-------- 89 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh--cCCCCC-----cEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC--------
Confidence 3578999999888766643200 011122 899999999999999999999987644322 110000
Q ss_pred ecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEe--eccce----eEEeccceeEeeecCCCCC
Q 004502 375 SDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTI--AKAGI----HASLNARCSVVAAANPIYG 448 (748)
Q Consensus 375 ~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i--~k~g~----~~~l~~~~~iiaa~Np~~g 448 (748)
.++ +..-.-.+..++++||||++.++....+.|+.+|++..+.+ ..+.. ...+| .+.+|+++|+..
T Consensus 90 ----~~~--l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~- 161 (328)
T PRK00080 90 ----PGD--LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAG- 161 (328)
T ss_pred ----hHH--HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcc-
Confidence 000 00000013467899999999999998999999999876543 21111 11233 478888888754
Q ss_pred ccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhH
Q 004502 449 TYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVF 528 (748)
Q Consensus 449 ~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (748)
.++++|.+||++++.+ +.++.+.-..+...
T Consensus 162 ------------~l~~~L~sRf~~~~~l-~~~~~~e~~~il~~------------------------------------- 191 (328)
T PRK00080 162 ------------LLTSPLRDRFGIVQRL-EFYTVEELEKIVKR------------------------------------- 191 (328)
T ss_pred ------------cCCHHHHHhcCeeeec-CCCCHHHHHHHHHH-------------------------------------
Confidence 4889999999888777 44444432222111
Q ss_pred HhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHH
Q 004502 529 VKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETII 608 (748)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~Lesli 608 (748)
... .....+++++.+.|.+.. .-++|.+..++
T Consensus 192 ----------------------------~~~----~~~~~~~~~~~~~ia~~~----------------~G~pR~a~~~l 223 (328)
T PRK00080 192 ----------------------------SAR----ILGVEIDEEGALEIARRS----------------RGTPRIANRLL 223 (328)
T ss_pred ----------------------------HHH----HcCCCcCHHHHHHHHHHc----------------CCCchHHHHHH
Confidence 111 123457888887777543 23579999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 609 RLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 609 Rla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
+.....|.......|+.+++.+++..+
T Consensus 224 ~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 224 RRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 988888888777899999999998654
No 34
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.60 E-value=1.6e-15 Score=143.50 Aligned_cols=128 Identities=20% Similarity=0.381 Sum_probs=92.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec-c-CCCCCcccceeeeecccccceeeccceEeec--cCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT-G-RGSSGVGLTAAVTSDQETGERRLEAGAMVLA--DRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-g-~~~~~~glt~~~~~~~~~g~~~~~~G~l~la--~~gil~IDEidk~~ 406 (748)
||||+||||+|||++++++++.++..+... . ..++...+.+..... .+...+.+|.++.+ ++++++|||+++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 699999999999999999999998765332 2 223334454443322 45556677888755 78999999999999
Q ss_pred hhhHHHHHHHHhhceEEeeccceeEEecc------ceeEeeecCCCC-CccCCCCCccccCCCChhhhccc
Q 004502 407 DQDRVAIHEVMEQQTVTIAKAGIHASLNA------RCSVVAAANPIY-GTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 407 ~~~~~~L~e~me~~~i~i~k~g~~~~l~~------~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
++.+..|+.+++++.+.+...+.....+. .+.+|||+||.. +.. .++++|+|||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~----------~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRK----------ELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TT----------TTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcC----------cCCHHHHhhC
Confidence 99999999999999988766555554444 499999999976 332 6999999998
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.59 E-value=1.7e-13 Score=147.47 Aligned_cols=218 Identities=19% Similarity=0.275 Sum_probs=139.1
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeee
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTS 375 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~ 375 (748)
.+++|++.++..+...+.+. +..+.... |++|+||||+|||++++.+++.+...+....... +.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~--~~~~~~~~-----~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~----~~----- 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAA--KMRQEALD-----HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA----LE----- 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHH--HhcCCCCC-----eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch----hc-----
Confidence 46899999998877666422 00011112 8999999999999999999998865443221100 00
Q ss_pred cccccceeeccceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEee-ccc-----eeEEeccceeEeeecCCCCC
Q 004502 376 DQETGERRLEAGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIA-KAG-----IHASLNARCSVVAAANPIYG 448 (748)
Q Consensus 376 ~~~~g~~~~~~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~-k~g-----~~~~l~~~~~iiaa~Np~~g 448 (748)
..+... +.+ .+..+++++|||++.++++.+..|+.+|+.....+- .++ ....+| .+.+++++|...
T Consensus 68 --~~~~l~---~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~- 140 (305)
T TIGR00635 68 --KPGDLA---AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAG- 140 (305)
T ss_pred --CchhHH---HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCcc-
Confidence 000000 000 123467999999999999999999999987654321 111 112233 366777776643
Q ss_pred ccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhH
Q 004502 449 TYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVF 528 (748)
Q Consensus 449 ~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (748)
.++++|.|||.+++.+ ++++.+.-..+
T Consensus 141 ------------~l~~~l~sR~~~~~~l-~~l~~~e~~~i---------------------------------------- 167 (305)
T TIGR00635 141 ------------MLTSPLRDRFGIILRL-EFYTVEELAEI---------------------------------------- 167 (305)
T ss_pred ------------ccCHHHHhhcceEEEe-CCCCHHHHHHH----------------------------------------
Confidence 4889999999887777 44443332222
Q ss_pred HhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHH
Q 004502 529 VKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETII 608 (748)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~Lesli 608 (748)
+++... .....+++++.+.|.+.. .-.+|.+..++
T Consensus 168 -------------------------l~~~~~----~~~~~~~~~al~~ia~~~----------------~G~pR~~~~ll 202 (305)
T TIGR00635 168 -------------------------VSRSAG----LLNVEIEPEAALEIARRS----------------RGTPRIANRLL 202 (305)
T ss_pred -------------------------HHHHHH----HhCCCcCHHHHHHHHHHh----------------CCCcchHHHHH
Confidence 121111 123467888887777643 12468888888
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 609 RLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 609 Rla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
+.+...|.......|+.+++..++..
T Consensus 203 ~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 203 RRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 88878887777788999999999876
No 36
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=1.6e-14 Score=159.60 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=94.9
Q ss_pred HcccCcccChHHHHHHHHHHHhC---CcccccCC-CccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC-CCC
Q 004502 292 NSLAPSIYGHSWIKKAVILLMLG---GVEKNLKN-GTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG-SSG 366 (748)
Q Consensus 292 ~si~p~i~G~~~~K~aill~l~g---g~~~~~~~-~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~-~~~ 366 (748)
..+...|+|++.+|+++..++.- +....... ......+-|+||+||||||||++++++++.+..++...... -+.
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34444599999999999888732 11000000 00112234899999999999999999999987765443211 111
Q ss_pred cccceeeeecccccceeeccceEeeccCceeeecCCCcCChh--------------hHHHHHHHHhhceEEeeccceeEE
Q 004502 367 VGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQ--------------DRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 367 ~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~--------------~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
.|..+........+-.....+.+..+.+||+||||+|++++. +|.+|+++||...+.+...|....
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 121111000000000001123444578899999999999763 889999999977777755444333
Q ss_pred eccceeEeeecCCC
Q 004502 433 LNARCSVVAAANPI 446 (748)
Q Consensus 433 l~~~~~iiaa~Np~ 446 (748)
-...+.+|+|+|+.
T Consensus 227 ~~~~~~~i~t~nil 240 (412)
T PRK05342 227 PQQEFIQVDTTNIL 240 (412)
T ss_pred CCCCeEEeccCCce
Confidence 33678899999984
No 37
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-14 Score=158.52 Aligned_cols=164 Identities=19% Similarity=0.250 Sum_probs=111.9
Q ss_pred cccCcccChHH-HHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc---EEe--ccCCCC-
Q 004502 293 SLAPSIYGHSW-IKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA---IST--TGRGSS- 365 (748)
Q Consensus 293 si~p~i~G~~~-~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~--~g~~~~- 365 (748)
.=+.+|.|... ..+++.++--. .+.++.|||.|++||||..+|+++++.++|. +.. ++-.+.
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 34556777644 45555554332 2345689999999999999999999999983 211 111100
Q ss_pred --Ccccceeeeeccccccee-eccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeee
Q 004502 366 --GVGLTAAVTSDQETGERR-LEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAA 442 (748)
Q Consensus 366 --~~glt~~~~~~~~~g~~~-~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa 442 (748)
...|.++. +...||... -++|.+.+|++|.+|||||..|+...|..|+.+++++.+. +-|.+...+.+++||||
T Consensus 311 LlESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~--rvG~t~~~~vDVRIIAA 387 (560)
T COG3829 311 LLESELFGYE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIE--RVGGTKPIPVDVRIIAA 387 (560)
T ss_pred HHHHHHhCcC-CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEE--ecCCCCceeeEEEEEec
Confidence 01122221 122344332 3799999999999999999999999999999999999864 66888889999999999
Q ss_pred cCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 443 ANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 443 ~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+|...... .+.-.+...|+-|..++=+.
T Consensus 388 TN~nL~~~------i~~G~FReDLYYRLNV~~i~ 415 (560)
T COG3829 388 TNRNLEKM------IAEGTFREDLYYRLNVIPIT 415 (560)
T ss_pred cCcCHHHH------HhcCcchhhheeeeceeeec
Confidence 99863211 11123566677777655443
No 38
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.56 E-value=2.6e-14 Score=156.95 Aligned_cols=201 Identities=15% Similarity=0.231 Sum_probs=118.3
Q ss_pred HHHHHcccCcccChHHHHHHHHHHHhC---Ccc----cccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 288 DLLGNSLAPSIYGHSWIKKAVILLMLG---GVE----KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 288 ~~l~~si~p~i~G~~~~K~aill~l~g---g~~----~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
..|.+.+...|+|++.+|+++..++.. +.. .....+. ..+..|+||+||||+|||++++++++.+..++...
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~-~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGV-ELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhcccccccccccc-ccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 345556677799999999999988731 110 0000110 12234999999999999999999999887655432
Q ss_pred cCC-CCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh--------------hhHHHHHHHHhhceEEee
Q 004502 361 GRG-SSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND--------------QDRVAIHEVMEQQTVTIA 425 (748)
Q Consensus 361 g~~-~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~--------------~~~~~L~e~me~~~i~i~ 425 (748)
... -+..|+.+.-.....+......++.+..+.+||+||||+|++++ ++|++|+++||.....+.
T Consensus 148 da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 148 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred chhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 211 11112211100000000001124555667889999999999987 689999999974333333
Q ss_pred ccceeEEeccceeEeeecCCC---CCccCC------------------C-CC-------ccc--------cCCCChhhhc
Q 004502 426 KAGIHASLNARCSVVAAANPI---YGTYDR------------------S-LT-------PTK--------NIGLPDSLLS 468 (748)
Q Consensus 426 k~g~~~~l~~~~~iiaa~Np~---~g~~~~------------------~-~~-------~~~--------ni~l~~~Lls 468 (748)
..|....-..++.+|.|+|.. .|.|+. . .. ... +..+.|+|+.
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 333322222578899999983 233320 0 00 000 1237889999
Q ss_pred cccEEEEecCCCChhHhHHHHH
Q 004502 469 RFDLLFIVLDQMDPDIDRRISD 490 (748)
Q Consensus 469 RFdli~~~~d~~~~~~d~~ia~ 490 (748)
|+|.++.+ .+.+.+....|+.
T Consensus 308 Rld~Iv~f-~pL~~~~L~~Il~ 328 (413)
T TIGR00382 308 RLPVIATL-EKLDEEALIAILT 328 (413)
T ss_pred CCCeEeec-CCCCHHHHHHHHH
Confidence 99888777 5556555444443
No 39
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.52 E-value=5.7e-14 Score=152.03 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=144.7
Q ss_pred cCcccEEEECCCCccHHHHHHHHHHhCCCc----EEec-cCCCC---CcccceeeeecccccceeeccceEeeccCceee
Q 004502 327 RGDINMMMVGDPSVAKSQLLRAIMNIAPLA----ISTT-GRGSS---GVGLTAAVTSDQETGERRLEAGAMVLADRGVVC 398 (748)
Q Consensus 327 rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~----~~~~-g~~~~---~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~ 398 (748)
++|.+|||.|++||||..+||+|++.+||. ++++ .-... ...|.+. .+...+|...-++|.+.+||||.+|
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH-eKGAFTGA~~~r~GrFElAdGGTLF 322 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH-EKGAFTGAINTRRGRFELADGGTLF 322 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcc-cccccccchhccCcceeecCCCeEe
Confidence 345589999999999999999999999983 2221 10000 1122222 2334577777789999999999999
Q ss_pred ecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecC
Q 004502 399 IDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLD 478 (748)
Q Consensus 399 IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d 478 (748)
+|||..|+...|..|+.++++|.+ .+-|...++..+++||||+|..-.. ...+-.+...|+-|..++=+..+
T Consensus 323 LDEIGelPL~lQaKLLRvLQegEi--eRvG~~r~ikVDVRiIAATNRDL~~------~V~~G~FRaDLYyRLsV~Pl~lP 394 (550)
T COG3604 323 LDEIGELPLALQAKLLRVLQEGEI--ERVGGDRTIKVDVRVIAATNRDLEE------MVRDGEFRADLYYRLSVFPLELP 394 (550)
T ss_pred chhhccCCHHHHHHHHHHHhhcce--eecCCCceeEEEEEEEeccchhHHH------HHHcCcchhhhhhcccccccCCC
Confidence 999999999999999999999985 5779999999999999999986200 01111356677777754333222
Q ss_pred CC-ChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHH
Q 004502 479 QM-DPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKK 556 (748)
Q Consensus 479 ~~-~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrk 556 (748)
+. +...|. .+|.|++..-..+
T Consensus 395 PLRER~~DIplLA~~Fle~~~~~--------------------------------------------------------- 417 (550)
T COG3604 395 PLRERPEDIPLLAGYFLEKFRRR--------------------------------------------------------- 417 (550)
T ss_pred CcccCCccHHHHHHHHHHHHHHh---------------------------------------------------------
Confidence 21 222222 3455544421110
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHH
Q 004502 557 YIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDV 628 (748)
Q Consensus 557 yi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv 628 (748)
. -+ -.-.++.+|.+.|.+|+ ||-++|.||.+|+-|-..| +..++.+|.
T Consensus 418 -~--gr--~~l~ls~~Al~~L~~y~---------------wPGNVRELen~veRavlla----~~~~~~~d~ 465 (550)
T COG3604 418 -L--GR--AILSLSAEALELLSSYE---------------WPGNVRELENVVERAVLLA----GRLTRRGDL 465 (550)
T ss_pred -c--CC--cccccCHHHHHHHHcCC---------------CCCcHHHHHHHHHHHHHHh----cccCCCcce
Confidence 0 00 02368899999998765 9999999999999887666 445565664
No 40
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.50 E-value=2.3e-13 Score=149.92 Aligned_cols=239 Identities=18% Similarity=0.232 Sum_probs=157.4
Q ss_pred cccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCcc-
Q 004502 293 SLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGVG- 368 (748)
Q Consensus 293 si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~g- 368 (748)
.....++|+...-+.+.-.+-. -...+++|||.|++||||-.+||++++.++|. +.....+.-...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 3566788876654443332211 12345689999999999999999999999982 221111111111
Q ss_pred ----cceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecC
Q 004502 369 ----LTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAAN 444 (748)
Q Consensus 369 ----lt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~N 444 (748)
|.+. .+...+|...-+.|.+..|+||++|||||..|+.+.|..|+.+++++++. +-|...+.+.+++||||+|
T Consensus 208 ~ESELFGh-ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~--rvG~~~~i~vdvRiIaaT~ 284 (464)
T COG2204 208 LESELFGH-EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFE--RVGGNKPIKVDVRIIAATN 284 (464)
T ss_pred HHHHhhcc-cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeE--ecCCCcccceeeEEEeecC
Confidence 1111 11223566666789999999999999999999999999999999999865 6688888999999999999
Q ss_pred CCCCccCCCCCccccCCCChhhhccccEEEEecCC-CChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccc
Q 004502 445 PIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQ-MDPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVD 522 (748)
Q Consensus 445 p~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~-~~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (748)
..-... .++-.+-+.|+-|+.++-+-.++ .+..+|. .+++|++..
T Consensus 285 ~dL~~~------v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~--------------------------- 331 (464)
T COG2204 285 RDLEEE------VAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKR--------------------------- 331 (464)
T ss_pred cCHHHH------HHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHH---------------------------
Confidence 862110 11124678888888654443222 2222222 345555443
Q ss_pred cchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChh
Q 004502 523 TDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITAR 602 (748)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R 602 (748)
+..--. .-.+.++++|.+.|..|. ||-++|
T Consensus 332 ----------------------------------~~~~~~-~~~~~~s~~a~~~L~~y~---------------WPGNVR 361 (464)
T COG2204 332 ----------------------------------FAAELG-RPPKGFSPEALAALLAYD---------------WPGNVR 361 (464)
T ss_pred ----------------------------------HHHHcC-CCCCCCCHHHHHHHHhCC---------------CChHHH
Confidence 222111 134578999998887653 999999
Q ss_pred hhhhHHHHHHHHHHhcCCCCccHHHHHH
Q 004502 603 TLETIIRLSTAHAKMKLNRKISKSDVEA 630 (748)
Q Consensus 603 ~LesliRla~A~Akl~~~~~V~~~Dv~~ 630 (748)
+|+++++.+- -+.-.+.++.+|+--
T Consensus 362 EL~N~ver~~---il~~~~~i~~~~l~~ 386 (464)
T COG2204 362 ELENVVERAV---ILSEGPEIEVEDLPL 386 (464)
T ss_pred HHHHHHHHHH---hcCCccccchhhccc
Confidence 9999988764 344455677777553
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.49 E-value=3.9e-13 Score=142.44 Aligned_cols=173 Identities=19% Similarity=0.189 Sum_probs=104.7
Q ss_pred HHHHHHcccCcccChHHHHHHHHHHH----hCCcccccCCCcc-ccCcccEEEECCCCccHHHHHHHHHHhCCCc-----
Q 004502 287 FDLLGNSLAPSIYGHSWIKKAVILLM----LGGVEKNLKNGTH-LRGDINMMMVGDPSVAKSQLLRAIMNIAPLA----- 356 (748)
Q Consensus 287 ~~~l~~si~p~i~G~~~~K~aill~l----~gg~~~~~~~~~~-~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~----- 356 (748)
.+.+..++.++++|++.+|+.+.-.. +....+. -|.. .+...|+||.||||||||++|+++++.+...
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~--~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKN--LGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 35677788899999999998663221 1111111 1111 1223489999999999999999998875321
Q ss_pred ---EEeccCCCCCcccceeeeeccccccee-eccceEeeccCceeeecCCCcC---------ChhhHHHHHHHHhhceEE
Q 004502 357 ---ISTTGRGSSGVGLTAAVTSDQETGERR-LEAGAMVLADRGVVCIDEFDKM---------NDQDRVAIHEVMEQQTVT 423 (748)
Q Consensus 357 ---~~~~g~~~~~~glt~~~~~~~~~g~~~-~~~G~l~la~~gil~IDEidk~---------~~~~~~~L~e~me~~~i~ 423 (748)
+.++ ...+.+.. .|+.. ...+.+..|.+||+||||++.+ ..+.+..|+..|+++.
T Consensus 92 ~~~~~v~-----~~~l~~~~-----~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-- 159 (287)
T CHL00181 92 GHLLTVT-----RDDLVGQY-----IGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-- 159 (287)
T ss_pred CceEEec-----HHHHHHHH-----hccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC--
Confidence 1111 00111100 11100 0123344567899999999986 4667888999998642
Q ss_pred eeccceeEEeccceeEeeecCCCC-CccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 424 IAKAGIHASLNARCSVVAAANPIY-GTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 424 i~k~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
.++.||+|+++.. ..| ..+.|+|.+||+.++.+.+ .+.+....|+.+++.
T Consensus 160 -----------~~~~vI~ag~~~~~~~~---------~~~np~L~sR~~~~i~F~~-~t~~el~~I~~~~l~ 210 (287)
T CHL00181 160 -----------DDLVVIFAGYKDRMDKF---------YESNPGLSSRIANHVDFPD-YTPEELLQIAKIMLE 210 (287)
T ss_pred -----------CCEEEEEeCCcHHHHHH---------HhcCHHHHHhCCceEEcCC-cCHHHHHHHHHHHHH
Confidence 3467777776531 111 1457999999999998844 455544555554443
No 42
>PHA02244 ATPase-like protein
Probab=99.49 E-value=1.6e-13 Score=146.59 Aligned_cols=140 Identities=15% Similarity=0.201 Sum_probs=99.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEe--eccCceeeecCCCcCChh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMV--LADRGVVCIDEFDKMNDQ 408 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~--la~~gil~IDEidk~~~~ 408 (748)
||||.||||||||+++++++..+..+++..........+.+.+ ...|. ++.|.+. .+++|+|+|||++.++++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i---~~~g~--~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI---DANGK--FHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc---ccccc--ccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 8999999999999999999999887765443211111222111 11222 3445553 358899999999999999
Q ss_pred hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCC
Q 004502 409 DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMD 481 (748)
Q Consensus 409 ~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~ 481 (748)
.+..|+.+++++.+.+ .|.....+.+|++|||+||....|+. .....-.++++++||| +++.+ +.+.
T Consensus 196 vq~~L~~lLd~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRF-v~I~~-dyp~ 262 (383)
T PHA02244 196 ALIIINSAIANKFFDF--ADERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRF-APIEF-DYDE 262 (383)
T ss_pred HHHHHHHHhccCeEEe--cCcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhc-EEeeC-CCCc
Confidence 9999999999987654 36667777899999999997533422 1112236999999999 55555 6555
No 43
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.47 E-value=3.5e-13 Score=145.73 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=94.3
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCC---cEEeccCCCCCcc-----cceeeeecccccceeeccceEeeccCceeeecC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRGSSGVG-----LTAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~~~~~g-----lt~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
.+|||.|++||||+.+|++++..+++ ++........... +.+. .+...+|.....+|.+..|++|++||||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~-~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH-EAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc-ccccccCcccccCCchhhCCCCEEEeCC
Confidence 38999999999999999999998875 2222111110001 1110 1111233333467889999999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
++.|+.+.|..|+.+++++.+. +.|.....+.++.+|+|+|...... .+.-.+.+.|+.||..+
T Consensus 102 i~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~at~~~l~~~------~~~g~fr~dL~~rl~~~ 165 (329)
T TIGR02974 102 LATASLLVQEKLLRVIEYGEFE--RVGGSQTLQVDVRLVCATNADLPAL------AAEGRFRADLLDRLAFD 165 (329)
T ss_pred hHhCCHHHHHHHHHHHHcCcEE--ecCCCceeccceEEEEechhhHHHH------hhcCchHHHHHHHhcch
Confidence 9999999999999999998754 4466667788999999999753110 11124778999999653
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.47 E-value=5.7e-13 Score=141.29 Aligned_cols=218 Identities=19% Similarity=0.142 Sum_probs=129.9
Q ss_pred ccCcccChHHHHHHHHHHH--hCCcccccCCCcc-ccCcccEEEECCCCccHHHHHHHHHHhCCCc--------EEeccC
Q 004502 294 LAPSIYGHSWIKKAVILLM--LGGVEKNLKNGTH-LRGDINMMMVGDPSVAKSQLLRAIMNIAPLA--------ISTTGR 362 (748)
Q Consensus 294 i~p~i~G~~~~K~aill~l--~gg~~~~~~~~~~-~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~--------~~~~g~ 362 (748)
+.-++.|.+.+|+.+.-.. .-........|.. .....|+||.||||||||++|+++++.+... ++++.
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~- 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR- 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH-
Confidence 3345799999998863221 1100000111211 1123489999999999999998888766421 11111
Q ss_pred CCCCcccceeeeecccccce-eeccceEeeccCceeeecCCCcC---------ChhhHHHHHHHHhhceEEeeccceeEE
Q 004502 363 GSSGVGLTAAVTSDQETGER-RLEAGAMVLADRGVVCIDEFDKM---------NDQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 363 ~~~~~glt~~~~~~~~~g~~-~~~~G~l~la~~gil~IDEidk~---------~~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
..+.... .|+. ....+.+..|.+|++||||++.+ +.+.+..|++.|+++.
T Consensus 99 ----~~l~~~~-----~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~----------- 158 (284)
T TIGR02880 99 ----DDLVGQY-----IGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR----------- 158 (284)
T ss_pred ----HHHhHhh-----cccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-----------
Confidence 0111111 1110 00123444567899999999977 3556788999998652
Q ss_pred eccceeEeeecCCCC-CccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCC
Q 004502 433 LNARCSVVAAANPIY-GTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDG 511 (748)
Q Consensus 433 l~~~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~ 511 (748)
.++.+|+|+++.. ..| ..+.++|.+||+..+.+.+ .+.+....|..+.+..
T Consensus 159 --~~~~vI~a~~~~~~~~~---------~~~np~L~sR~~~~i~fp~-l~~edl~~I~~~~l~~---------------- 210 (284)
T TIGR02880 159 --DDLVVILAGYKDRMDSF---------FESNPGFSSRVAHHVDFPD-YSEAELLVIAGLMLKE---------------- 210 (284)
T ss_pred --CCEEEEEeCCcHHHHHH---------HhhCHHHHhhCCcEEEeCC-cCHHHHHHHHHHHHHH----------------
Confidence 3577888877641 111 1468999999999888844 4444444444443331
Q ss_pred CCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCC
Q 004502 512 SSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNA 591 (748)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~ 591 (748)
..+.+++++.+.+.++....+.
T Consensus 211 -----------------------------------------------------~~~~l~~~a~~~L~~~l~~~~~----- 232 (284)
T TIGR02880 211 -----------------------------------------------------QQYRFSAEAEEAFADYIALRRT----- 232 (284)
T ss_pred -----------------------------------------------------hccccCHHHHHHHHHHHHHhCC-----
Confidence 1234667777777665443322
Q ss_pred CCCCCcccChhhhhhHHHHHHHHHHhcCCC
Q 004502 592 KTGGTLPITARTLETIIRLSTAHAKMKLNR 621 (748)
Q Consensus 592 ~~~~~~~~t~R~LesliRla~A~Akl~~~~ 621 (748)
..|+.+.|.+.++++.+......|+..
T Consensus 233 ---~~~~GN~R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 233 ---QPHFANARSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 247889999999998887777666643
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.44 E-value=2.2e-12 Score=135.47 Aligned_cols=220 Identities=18% Similarity=0.195 Sum_probs=123.6
Q ss_pred cccChHHHHHHHHHH--HhCCcccccCCCcc-ccCcccEEEECCCCccHHHHHHHHHHhCCCc-EEeccCC--CCCcccc
Q 004502 297 SIYGHSWIKKAVILL--MLGGVEKNLKNGTH-LRGDINMMMVGDPSVAKSQLLRAIMNIAPLA-ISTTGRG--SSGVGLT 370 (748)
Q Consensus 297 ~i~G~~~~K~aill~--l~gg~~~~~~~~~~-~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~-~~~~g~~--~~~~glt 370 (748)
+++|++.+|+.+--. ..--.......|.. ..+..|++|+||||||||++|+.+++.+... ....+.. .....+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 478999999877421 11000000011211 1122489999999999999999999875210 0000000 0000111
Q ss_pred eeeeeccccccee-eccceEeeccCceeeecCCCcCC--------hhhHHHHHHHHhhceEEeeccceeEEeccceeEee
Q 004502 371 AAVTSDQETGERR-LEAGAMVLADRGVVCIDEFDKMN--------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVA 441 (748)
Q Consensus 371 ~~~~~~~~~g~~~-~~~G~l~la~~gil~IDEidk~~--------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iia 441 (748)
+... |+.. .-.+.+..|.+||+||||++.+. .+.+..|+..|++.. .++.+++
T Consensus 87 ~~~~-----g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vil 148 (261)
T TIGR02881 87 GEYI-----GHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLIL 148 (261)
T ss_pred hhhc-----cchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEe
Confidence 1100 1000 01233445678999999999876 346678888887542 3456666
Q ss_pred ecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCcc
Q 004502 442 AANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEV 521 (748)
Q Consensus 442 a~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (748)
+.++..... -..++++|.+||+..+.+ +..+.+....+..+.+.
T Consensus 149 a~~~~~~~~--------~~~~~p~L~sRf~~~i~f-~~~~~~el~~Il~~~~~--------------------------- 192 (261)
T TIGR02881 149 AGYSDEMDY--------FLSLNPGLRSRFPISIDF-PDYTVEELMEIAERMVK--------------------------- 192 (261)
T ss_pred cCCcchhHH--------HHhcChHHHhccceEEEE-CCCCHHHHHHHHHHHHH---------------------------
Confidence 666542110 114789999999988877 34444433333333222
Q ss_pred ccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccCh
Q 004502 522 DTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITA 601 (748)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~ 601 (748)
. ..-.+++++...|.+++..++.... ..+.+.
T Consensus 193 -----------------------------------------~-~~~~l~~~a~~~l~~~~~~~~~~~~------~~~gn~ 224 (261)
T TIGR02881 193 -----------------------------------------E-REYKLTEEAKWKLREHLYKVDQLSS------REFSNA 224 (261)
T ss_pred -----------------------------------------H-cCCccCHHHHHHHHHHHHHHHhccC------CCCchH
Confidence 1 1224788888888877776653211 134578
Q ss_pred hhhhhHHHHHHHHHHhc
Q 004502 602 RTLETIIRLSTAHAKMK 618 (748)
Q Consensus 602 R~LesliRla~A~Akl~ 618 (748)
|.+..++..|..+...+
T Consensus 225 R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 225 RYVRNIIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888777544
No 46
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.44 E-value=9.5e-13 Score=142.62 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=135.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc-----E-EeccCCCCC-cc--cceeeeecccccceeeccceEeeccCceeeecC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA-----I-STTGRGSSG-VG--LTAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~-----~-~~~g~~~~~-~g--lt~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
|||+.|++||||+.+|+.++....+. + +.++..+.. .. |.+ ..+...+|...-++|.+..|+||++|+||
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG-~~kGaftGa~~~k~Glfe~A~GGtLfLDE 181 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFG-HEKGAFTGAQGGKAGLFEQANGGTLFLDE 181 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhc-cccceeecccCCcCchheecCCCEEehhh
Confidence 89999999999999999999877662 1 112221111 01 111 12223356556689999999999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCCh--hhhc-cccEEEEecC
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPD--SLLS-RFDLLFIVLD 478 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~--~Lls-RFdli~~~~d 478 (748)
+..|++..|..|+.+||+|.+. +-|.....+.++.+++|+|-..+.. +-. .|++ |+.+++.+++
T Consensus 182 I~~LP~~~Q~kLl~~le~g~~~--rvG~~~~~~~dVRli~AT~~~l~~~-----------~~~g~dl~~rl~~~~I~LPp 248 (403)
T COG1221 182 IHRLPPEGQEKLLRVLEEGEYR--RVGGSQPRPVDVRLICATTEDLEEA-----------VLAGADLTRRLNILTITLPP 248 (403)
T ss_pred hhhCCHhHHHHHHHHHHcCceE--ecCCCCCcCCCceeeeccccCHHHH-----------HHhhcchhhhhcCceecCCC
Confidence 9999999999999999999876 4466778889999999999864321 222 5566 6666666644
Q ss_pred CCChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHH
Q 004502 479 QMDPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKY 557 (748)
Q Consensus 479 ~~~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrky 557 (748)
-.....|. .+++|++.....+.
T Consensus 249 LrER~~Di~~L~e~Fl~~~~~~l--------------------------------------------------------- 271 (403)
T COG1221 249 LRERKEDILLLAEHFLKSEARRL--------------------------------------------------------- 271 (403)
T ss_pred hhhchhhHHHHHHHHHHHHHHHc---------------------------------------------------------
Confidence 33332222 35555555332211
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCC
Q 004502 558 IHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLN 620 (748)
Q Consensus 558 i~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~ 620 (748)
....+..+++|...|..|. ||-++|+|+++|..+.+.|.....
T Consensus 272 -----~~~~~~~~~~a~~~L~~y~---------------~pGNirELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 272 -----GLPLSVDSPEALRALLAYD---------------WPGNIRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred -----CCCCCCCCHHHHHHHHhCC---------------CCCcHHHHHHHHHHHHHHhccccC
Confidence 0122344567777776654 899999999999999998875543
No 47
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.8e-12 Score=145.80 Aligned_cols=170 Identities=25% Similarity=0.380 Sum_probs=110.6
Q ss_pred HHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccc
Q 004502 291 GNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLT 370 (748)
Q Consensus 291 ~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt 370 (748)
..-+-.+-||.+.+|.-|+-.|+=+..... ..|.| +||+||||+|||.|++.+|+.++|.+.-...+ |
T Consensus 318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~~~-----~kGpI-LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG----G-- 385 (782)
T COG0466 318 EKILDKDHYGLEKVKERILEYLAVQKLTKK-----LKGPI-LCLVGPPGVGKTSLGKSIAKALGRKFVRISLG----G-- 385 (782)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHhcc-----CCCcE-EEEECCCCCCchhHHHHHHHHhCCCEEEEecC----c--
Confidence 345677899999999998877764322222 23333 89999999999999999999999976433211 1
Q ss_pred eeeeecc--cccceee----ccceEeec------cCceeeecCCCcCChhhH----HHHHHHHhh-ceEEeeccce--eE
Q 004502 371 AAVTSDQ--ETGERRL----EAGAMVLA------DRGVVCIDEFDKMNDQDR----VAIHEVMEQ-QTVTIAKAGI--HA 431 (748)
Q Consensus 371 ~~~~~~~--~~g~~~~----~~G~l~la------~~gil~IDEidk~~~~~~----~~L~e~me~-~~i~i~k~g~--~~ 431 (748)
++|. ..|.+.- .||.++.+ .+-+++|||||||..+.+ ++|+|+|+- |.-++...-. ..
T Consensus 386 ---vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 386 ---VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred ---cccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCcc
Confidence 1111 1222211 35555433 467999999999987654 899999974 3322221111 12
Q ss_pred EeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 004502 432 SLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDH 491 (748)
Q Consensus 432 ~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~ 491 (748)
.| +++.+|||+|... .+|.||+||..+|-+- .+. +++...||..
T Consensus 463 DL-S~VmFiaTANsl~-------------tIP~PLlDRMEiI~ls-gYt-~~EKl~IAk~ 506 (782)
T COG0466 463 DL-SKVMFIATANSLD-------------TIPAPLLDRMEVIRLS-GYT-EDEKLEIAKR 506 (782)
T ss_pred ch-hheEEEeecCccc-------------cCChHHhcceeeeeec-CCC-hHHHHHHHHH
Confidence 22 4789999999875 5999999999776553 333 3334456543
No 48
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.39 E-value=6.6e-12 Score=149.41 Aligned_cols=175 Identities=21% Similarity=0.322 Sum_probs=107.8
Q ss_pred HcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC--CCCccc
Q 004502 292 NSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG--SSGVGL 369 (748)
Q Consensus 292 ~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~--~~~~gl 369 (748)
.-+..++||++.+|+.|+-.+....... +.+|. .++|+||||+|||++++.+++.+++.+.....+ .....+
T Consensus 318 ~~l~~~~~g~~~vK~~i~~~l~~~~~~~-----~~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i 391 (784)
T PRK10787 318 EILDTDHYGLERVKDRILEYLAVQSRVN-----KIKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEI 391 (784)
T ss_pred HHhhhhccCHHHHHHHHHHHHHHHHhcc-----cCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHh
Confidence 3466679999999999985444211111 12333 599999999999999999999988865432211 111111
Q ss_pred ceeeeecccccceeeccceEe------eccCceeeecCCCcCChhh----HHHHHHHHhh-ceEEeeccceeEEe-ccce
Q 004502 370 TAAVTSDQETGERRLEAGAMV------LADRGVVCIDEFDKMNDQD----RVAIHEVMEQ-QTVTIAKAGIHASL-NARC 437 (748)
Q Consensus 370 t~~~~~~~~~g~~~~~~G~l~------la~~gil~IDEidk~~~~~----~~~L~e~me~-~~i~i~k~g~~~~l-~~~~ 437 (748)
.+.. + ...|. .+|.+. -..+.|++|||+|+++++. ..+|+++|+. +..++...-....+ -.++
T Consensus 392 ~g~~-~-~~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 392 RGHR-R-TYIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccch-h-ccCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 1100 0 00110 233322 1245699999999999876 4899999985 33333321111111 1478
Q ss_pred eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 004502 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVL 493 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il 493 (748)
.+|||+|.. .+|+||++||.+ +.+ .....++...|+.+.|
T Consensus 467 ~~i~TaN~~--------------~i~~aLl~R~~i-i~~-~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSM--------------NIPAPLLDRMEV-IRL-SGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCC--------------CCCHHHhcceee-eec-CCCCHHHHHHHHHHhh
Confidence 899999874 499999999965 444 4445565666776554
No 49
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.38 E-value=4.5e-12 Score=137.17 Aligned_cols=139 Identities=15% Similarity=0.210 Sum_probs=94.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cEEeccCCCCCcc-----cceeeeecccccceeeccceEeeccCceeeecCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRGSSGVG-----LTAAVTSDQETGERRLEAGAMVLADRGVVCIDEF 402 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~~~~~g-----lt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEi 402 (748)
+|||.|++||||+.+|++++...++ ++........... +.+. .+...+|.....+|.+..|++|++||||+
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~-~~~~~~g~~~~~~g~l~~a~gGtL~l~~i 109 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDEL 109 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccc-cccccCCcccccCCchhccCCCeEEeCCh
Confidence 8999999999999999999998875 2222111110001 1110 00111232233478888999999999999
Q ss_pred CcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE-EEEecC
Q 004502 403 DKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL-LFIVLD 478 (748)
Q Consensus 403 dk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl-i~~~~d 478 (748)
+.++...|..|+.+++.+.+. +.|.....+.++.+|+|+|..... ..+.-.+.+.|+.||.. .+.+++
T Consensus 110 ~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~s~~~l~~------l~~~g~f~~dL~~~l~~~~i~lPp 178 (326)
T PRK11608 110 ATAPMLVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNADLPA------MVAEGKFRADLLDRLAFDVVQLPP 178 (326)
T ss_pred hhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCchhHHH------HHHcCCchHHHHHhcCCCEEECCC
Confidence 999999999999999998754 445556777889999999875311 01111478899999954 455533
No 50
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.38 E-value=3e-12 Score=127.66 Aligned_cols=148 Identities=23% Similarity=0.287 Sum_probs=87.3
Q ss_pred HcccCcccChHHHHHHHHHHH--hCCcccccCCC-ccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcc
Q 004502 292 NSLAPSIYGHSWIKKAVILLM--LGGVEKNLKNG-THLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVG 368 (748)
Q Consensus 292 ~si~p~i~G~~~~K~aill~l--~gg~~~~~~~~-~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~g 368 (748)
+....+++||+++|+..-+.+ +-. +....++ .+ |||++||||||||++|+++++.+..++...- +..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLen-Pe~Fg~WAPk-----nVLFyGppGTGKTm~Akalane~kvp~l~vk----at~ 186 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLEN-PERFGDWAPK-----NVLFYGPPGTGKTMMAKALANEAKVPLLLVK----ATE 186 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhC-hHHhcccCcc-----eeEEECCCCccHHHHHHHHhcccCCceEEec----hHH
Confidence 345567999999988665543 111 1111111 12 8999999999999999999998877654321 112
Q ss_pred cceeeeecccccceeec-c-ceEeeccCceeeecCCCcCCh------------hhHHHHHHHHhhceEEeeccceeEEec
Q 004502 369 LTAAVTSDQETGERRLE-A-GAMVLADRGVVCIDEFDKMND------------QDRVAIHEVMEQQTVTIAKAGIHASLN 434 (748)
Q Consensus 369 lt~~~~~~~~~g~~~~~-~-G~l~la~~gil~IDEidk~~~------------~~~~~L~e~me~~~i~i~k~g~~~~l~ 434 (748)
|.+..+.| |...+. . ..-..+...|+||||+|.+.- +..++|+.-|+ |+. -+
T Consensus 187 liGehVGd---gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD---------gi~--en 252 (368)
T COG1223 187 LIGEHVGD---GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD---------GIK--EN 252 (368)
T ss_pred HHHHHhhh---HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cC
Confidence 22222211 111110 0 000122467999999997643 34567777665 221 12
Q ss_pred cceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 435 ARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 435 ~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
-.+..|||+|... -|.+++.|||.--+.+
T Consensus 253 eGVvtIaaTN~p~-------------~LD~aiRsRFEeEIEF 281 (368)
T COG1223 253 EGVVTIAATNRPE-------------LLDPAIRSRFEEEIEF 281 (368)
T ss_pred CceEEEeecCChh-------------hcCHHHHhhhhheeee
Confidence 3455667777654 4999999999755444
No 51
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.37 E-value=9.6e-12 Score=141.79 Aligned_cols=219 Identities=17% Similarity=0.200 Sum_probs=138.5
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCC---cEEeccCCCCCc-----ccceeeeecccccce-eeccceEeeccCceeeec
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRGSSGV-----GLTAAVTSDQETGER-RLEAGAMVLADRGVVCID 400 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~~~~~-----glt~~~~~~~~~g~~-~~~~G~l~la~~gil~ID 400 (748)
.+|||.|++||||+++|++++..+++ ++.......-.. .|.+. .....+|.. ...+|.+..|++|++|||
T Consensus 236 ~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~-~~gaftga~~~~~~Gl~e~A~gGTLfLd 314 (526)
T TIGR02329 236 ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGY-EEGAFTGARRGGRTGLIEAAHRGTLFLD 314 (526)
T ss_pred CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCC-cccccccccccccccchhhcCCceEEec
Confidence 38999999999999999999998765 232221111100 11111 001112221 135788889999999999
Q ss_pred CCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE-EEEecCC
Q 004502 401 EFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL-LFIVLDQ 479 (748)
Q Consensus 401 Eidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl-i~~~~d~ 479 (748)
|++.|+...|..|+.+++++.+. +.|.....+.++.+|+|+|.....- .+.-.+...|+.|+.. .+.+++-
T Consensus 315 eI~~Lp~~~Q~~Ll~~L~~~~~~--r~g~~~~~~~dvRiIaat~~~l~~~------v~~g~fr~dL~~rL~~~~I~lPPL 386 (526)
T TIGR02329 315 EIGEMPLPLQTRLLRVLEEREVV--RVGGTEPVPVDVRVVAATHCALTTA------VQQGRFRRDLFYRLSILRIALPPL 386 (526)
T ss_pred ChHhCCHHHHHHHHHHHhcCcEE--ecCCCceeeecceEEeccCCCHHHH------hhhcchhHHHHHhcCCcEEeCCCc
Confidence 99999999999999999998864 4466667778899999998753110 1112467788889864 4444333
Q ss_pred CChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHH
Q 004502 480 MDPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYI 558 (748)
Q Consensus 480 ~~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi 558 (748)
.+...|. .++.|++. ++
T Consensus 387 ReR~eDI~~L~~~fl~-------------------------------------------------------------~~- 404 (526)
T TIGR02329 387 RERPGDILPLAAEYLV-------------------------------------------------------------QA- 404 (526)
T ss_pred hhchhHHHHHHHHHHH-------------------------------------------------------------HH-
Confidence 3332232 23444333 21
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHH
Q 004502 559 HYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEA 630 (748)
Q Consensus 559 ~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~ 630 (748)
++. ....++++|...+...+..|..- +||-+.|+|+++++.+-..+...-...++.+|+..
T Consensus 405 --~~~-~~~~~~~~a~~~~~~~~~~L~~y--------~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 405 --AAA-LRLPDSEAAAQVLAGVADPLQRY--------PWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred --HHH-cCCCCCHHHHHHhHHHHHHHHhC--------CCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 111 12247888887755555444332 49999999999998876554322345788887653
No 52
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.3e-11 Score=127.15 Aligned_cols=134 Identities=24% Similarity=0.356 Sum_probs=88.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE-eccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcC-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS-TTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKM- 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~-~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~- 405 (748)
.|||+||||||||.|||++|+.....+. +.| ..|.-... ..| ..+-...+.+| ...|+||||||.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg-----SElVqKYi---GEG-aRlVRelF~lArekaPsIIFiDEIDAIg 257 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVG-----SELVQKYI---GEG-ARLVRELFELAREKAPSIIFIDEIDAIG 257 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEecc-----HHHHHHHh---ccc-hHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence 5999999999999999999987654331 221 11110000 011 11222233444 2479999999965
Q ss_pred ----------ChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEE
Q 004502 406 ----------NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLL 473 (748)
Q Consensus 406 ----------~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli 473 (748)
+.++|-.|+|.+.|-- |-.. ..++-||+|+|... -|.||||. |||-.
T Consensus 258 ~kR~d~~t~gDrEVQRTmleLL~qlD------GFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~DRk 316 (406)
T COG1222 258 AKRFDSGTSGDREVQRTMLELLNQLD------GFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRFDRK 316 (406)
T ss_pred cccccCCCCchHHHHHHHHHHHHhcc------CCCC--CCCeEEEEecCCcc-------------ccChhhcCCCcccce
Confidence 3467888999887521 2111 34688999999865 59999998 99998
Q ss_pred EEecCCCChhHhHHHHHHHHHhhhcc
Q 004502 474 FIVLDQMDPDIDRRISDHVLRMHRYR 499 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~~~~~ 499 (748)
+.+ +.|+.+... .|+..|...
T Consensus 317 IEf-plPd~~gR~----~Il~IHtrk 337 (406)
T COG1222 317 IEF-PLPDEEGRA----EILKIHTRK 337 (406)
T ss_pred eec-CCCCHHHHH----HHHHHHhhh
Confidence 888 577777654 456777643
No 53
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=6.6e-12 Score=148.30 Aligned_cols=203 Identities=15% Similarity=0.188 Sum_probs=120.9
Q ss_pred cHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCC
Q 004502 285 DTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGS 364 (748)
Q Consensus 285 ~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~ 364 (748)
+.+..|...+...|+||+.+++++.-++.-.-. .+.+..+..| ++||+||||+|||.+++.+++.+...+.......
T Consensus 447 ~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~-gl~~~~kp~~--~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se 523 (758)
T PRK11034 447 DTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRA-GLGHEHKPVG--SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE 523 (758)
T ss_pred HHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhc-cccCCCCCcc--eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechh
Confidence 345677888999999999988877766642100 0000001112 7999999999999999999999876543221110
Q ss_pred -CCcccceeeeecccccce-eeccceEe----eccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 365 -SGVGLTAAVTSDQETGER-RLEAGAMV----LADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 365 -~~~glt~~~~~~~~~g~~-~~~~G~l~----la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
............+ .|-. ....|.+. ....+|+++|||+++++++++.|+++|++|.++-. .|....+ .++.
T Consensus 524 ~~~~~~~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd~-rn~i 600 (758)
T PRK11034 524 YMERHTVSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKADF-RNVV 600 (758)
T ss_pred hcccccHHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCceecC-CCcE
Confidence 0000000000000 0100 01122222 22468999999999999999999999999998743 3433332 3677
Q ss_pred EeeecCCCCCc-------cCCCC---Cccc--cCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 439 VVAAANPIYGT-------YDRSL---TPTK--NIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 439 iiaa~Np~~g~-------~~~~~---~~~~--ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
+|+|+|..... |.... ...+ .-.++|.|++|+|-++.+ .+.+.+.-..|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f-~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF-DHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEc-CCCCHHHHHHHHHHHHH
Confidence 99999953100 11000 0001 125899999999988887 55566555566655443
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=2.6e-11 Score=141.37 Aligned_cols=172 Identities=20% Similarity=0.238 Sum_probs=105.5
Q ss_pred cccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC----------c-EEecc
Q 004502 293 SLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL----------A-ISTTG 361 (748)
Q Consensus 293 si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~----------~-~~~~g 361 (748)
.-++.++|++...++++-.+..+. .-|++|+||||||||++++.+++.... . +...+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPF------------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCC------------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 344568899998777766554331 117999999999999999999877631 1 22222
Q ss_pred CCCCC------cccceeeee--------c-ccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeec
Q 004502 362 RGSSG------VGLTAAVTS--------D-QETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAK 426 (748)
Q Consensus 362 ~~~~~------~glt~~~~~--------~-~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k 426 (748)
..... ..+...... + ...|-.....|.+..+++|++||||++.|++..+..|+.+|+++.+.+..
T Consensus 219 ~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~ 298 (615)
T TIGR02903 219 TTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSS 298 (615)
T ss_pred hhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeec
Confidence 11100 001110000 0 01122234567777889999999999999999999999999999876543
Q ss_pred cce---------------eEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHH
Q 004502 427 AGI---------------HASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISD 490 (748)
Q Consensus 427 ~g~---------------~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~ 490 (748)
... ....++++.++++++.... .++++|.+||..+. + .+.+.+.-..++.
T Consensus 299 ~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~------------~l~~aLrSR~~~i~-~-~pls~edi~~Il~ 363 (615)
T TIGR02903 299 SYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE------------EINPALRSRCAEVF-F-EPLTPEDIALIVL 363 (615)
T ss_pred ceeccCCcccchhhhhhcccCccceEEEEEecccccc------------ccCHHHHhceeEEE-e-CCCCHHHHHHHHH
Confidence 211 0112455677766654322 47899999997543 3 3344433333333
No 55
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.9e-12 Score=137.75 Aligned_cols=188 Identities=22% Similarity=0.268 Sum_probs=118.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec-cCCCC--CcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT-GRGSS--GVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-g~~~~--~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~ 407 (748)
.|||+||||||||+|||++|..+..+++.. |.-.. .+|.-|.-++|... .+-. ....|+||||||....
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~-------aAk~-~APcIIFIDEiDavG~ 410 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFA-------AAKA-RAPCIIFIDEIDAVGG 410 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHH-------HHHh-cCCeEEEEechhhhcc
Confidence 599999999999999999999999887654 32111 01111111121100 0000 1257999999997642
Q ss_pred ----hh----HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEec
Q 004502 408 ----QD----RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVL 477 (748)
Q Consensus 408 ----~~----~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~ 477 (748)
.+ ...|++.|-+ -+| ..-|..+.||||+|-.. .|+++|++ |||..+.+
T Consensus 411 kR~~~~~~y~kqTlNQLLvE------mDG--F~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD~~v~V- 468 (752)
T KOG0734|consen 411 KRNPSDQHYAKQTLNQLLVE------MDG--FKQNEGIIVIGATNFPE-------------ALDKALTRPGRFDRHVTV- 468 (752)
T ss_pred cCCccHHHHHHHHHHHHHHH------hcC--cCcCCceEEEeccCChh-------------hhhHHhcCCCccceeEec-
Confidence 11 2233333211 112 22345789999999875 58899998 99999998
Q ss_pred CCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHH
Q 004502 478 DQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKY 557 (748)
Q Consensus 478 d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrky 557 (748)
+.||..-..+|.++-+. .... ...+++..
T Consensus 469 p~PDv~GR~eIL~~yl~----ki~~-------------------------------------------~~~VD~~i---- 497 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLYLS----KIPL-------------------------------------------DEDVDPKI---- 497 (752)
T ss_pred CCCCcccHHHHHHHHHh----cCCc-------------------------------------------ccCCCHhH----
Confidence 77877766655544333 1110 01122211
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 558 IHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 558 i~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
| || ++..+|--.|++|+..|.-.|..++...|+..|++.|-.
T Consensus 498 i--AR--------------------------------GT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akD 539 (752)
T KOG0734|consen 498 I--AR--------------------------------GTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKD 539 (752)
T ss_pred h--cc--------------------------------CCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhh
Confidence 1 11 235677788999999999999999999999999999964
No 56
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.35 E-value=2e-11 Score=138.98 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=92.2
Q ss_pred cEEEECCCCccHHHHHHHHHHh--------CCC---cEEeccCCC-CCc----ccceeeeecccccce-eeccceEeecc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNI--------APL---AISTTGRGS-SGV----GLTAAVTSDQETGER-RLEAGAMVLAD 393 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~--------~~~---~~~~~g~~~-~~~----glt~~~~~~~~~g~~-~~~~G~l~la~ 393 (748)
+|||.|++||||+.+|++++.. +++ ++....... +.. .|.+.. ....+|.. .-.+|.+..|+
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~-~gaftga~~~~~~Gl~e~A~ 322 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYE-EGAFTGSRRGGRAGLFEIAH 322 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCc-cccccCccccccCCchhccC
Confidence 8999999999999999999998 444 222211110 000 111110 00112221 23578899999
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
+|++||||++.|+...|..|+.+++++.+. +.|.....+.++.+|+|+|...... .+.-.+.+.|+.|+..+
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~--r~G~~~~~~~dvRiIaat~~~L~~~------v~~g~Fr~dL~yrL~~~ 394 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVT--RVGGHQPVPVDVRVISATHCDLEED------VRQGRFRRDLFYRLSIL 394 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEE--ecCCCceeccceEEEEecCCCHHHH------HhcccchHHHHHHhcCC
Confidence 999999999999999999999999999865 4466677888999999998763110 11113667788888654
Q ss_pred EE
Q 004502 474 FI 475 (748)
Q Consensus 474 ~~ 475 (748)
-+
T Consensus 395 ~I 396 (538)
T PRK15424 395 RL 396 (538)
T ss_pred ee
Confidence 33
No 57
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.35 E-value=7e-12 Score=145.08 Aligned_cols=209 Identities=18% Similarity=0.241 Sum_probs=136.2
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCC---cEEeccCC-CCCc----ccceeeeecccccceeeccceEeeccCceeeecC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRG-SSGV----GLTAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~-~~~~----glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
.+|||.|++||||+++|++++..+++ ++...... .+.. .+.+. .+...+|.....+|.+..|++|++||||
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGH-EKGAFTGAIAQRKGRFELADGGTLFLDE 298 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCC-CCCccCCCCcCCCCcccccCCCeEEEec
Confidence 38999999999999999999998875 22221111 1110 01110 0111122222356778899999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEE-EecCCC
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLF-IVLDQM 480 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~-~~~d~~ 480 (748)
++.++.+.|..|+.+++++.+. +.|.....+.++.+|+|+|...... .+.-.+.+.|+.|+..+- .+++-.
T Consensus 299 i~~L~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~s~~~l~~~------~~~~~f~~~L~~rl~~~~i~lPpLr 370 (534)
T TIGR01817 299 IGEISPAFQAKLLRVLQEGEFE--RVGGNRTLKVDVRLVAATNRDLEEA------VAKGEFRADLYYRINVVPIFLPPLR 370 (534)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--ECCCCceEeecEEEEEeCCCCHHHH------HHcCCCCHHHHHHhcCCeeeCCCcc
Confidence 9999999999999999998765 3344456677899999998753110 112247889999997643 343322
Q ss_pred ChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 481 DPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 481 ~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
+...|. .++.|++. ++
T Consensus 371 eR~eDi~~L~~~~l~-------------------------------------------------------------~~-- 387 (534)
T TIGR01817 371 ERREDIPLLAEAFLE-------------------------------------------------------------KF-- 387 (534)
T ss_pred cccccHHHHHHHHHH-------------------------------------------------------------HH--
Confidence 222332 34444433 11
Q ss_pred HHHh-cCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHH
Q 004502 560 YAKH-RIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVE 629 (748)
Q Consensus 560 ~ar~-~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~ 629 (748)
+++ ...+.++++|.+.|..+. ||-+.|+|+++++.+-..+ -...|+.+|+.
T Consensus 388 -~~~~~~~~~~s~~a~~~L~~~~---------------WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 388 -NRENGRPLTITPSAIRVLMSCK---------------WPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred -HHHcCCCCCCCHHHHHHHHhCC---------------CCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 111 123679999999888753 9999999999998775443 34578888864
No 58
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.33 E-value=1.5e-11 Score=141.06 Aligned_cols=211 Identities=19% Similarity=0.238 Sum_probs=136.1
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCc---E-Eec-cCCCCC---cccceeeeecccccceeeccceEeeccCceeeecC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLA---I-STT-GRGSSG---VGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~---~-~~~-g~~~~~---~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
.+|||.|++||||+.+|++++..+++. + .+. ...... ..|.+. .+...+|...-.+|.+..|++|++||||
T Consensus 211 ~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~-~~g~~~ga~~~~~g~~~~a~gGtL~lde 289 (509)
T PRK05022 211 LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGH-VKGAFTGAISNRSGKFELADGGTLFLDE 289 (509)
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCc-cccccCCCcccCCcchhhcCCCEEEecC
Confidence 389999999999999999999998752 2 221 111110 011111 0111122222356788899999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE-EEecCCC
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL-FIVLDQM 480 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli-~~~~d~~ 480 (748)
++.|+.+.|..|+.+++++.+. +.|.....+.++.+|+++|...... ...-.+...|+.|+..+ +.+++-.
T Consensus 290 I~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~~t~~~l~~~------~~~~~f~~dL~~rl~~~~i~lPpLr 361 (509)
T PRK05022 290 IGELPLALQAKLLRVLQYGEIQ--RVGSDRSLRVDVRVIAATNRDLREE------VRAGRFRADLYHRLSVFPLSVPPLR 361 (509)
T ss_pred hhhCCHHHHHHHHHHHhcCCEe--eCCCCcceecceEEEEecCCCHHHH------HHcCCccHHHHhcccccEeeCCCch
Confidence 9999999999999999998763 3455566777899999999753110 11114788899998764 3343323
Q ss_pred ChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 481 DPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 481 ~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
+...|. .++.|++. ++
T Consensus 362 eR~eDI~~L~~~fl~-------------------------------------------------------------~~-- 378 (509)
T PRK05022 362 ERGDDVLLLAGYFLE-------------------------------------------------------------QN-- 378 (509)
T ss_pred hchhhHHHHHHHHHH-------------------------------------------------------------HH--
Confidence 332332 24444433 21
Q ss_pred HHHh--cCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCC---CccHHHH
Q 004502 560 YAKH--RIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNR---KISKSDV 628 (748)
Q Consensus 560 ~ar~--~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~---~V~~~Dv 628 (748)
+++ .-.+.++++|.+.|..| +||-+.|+|+++|+.+-..|.-...+ .++.+|+
T Consensus 379 -~~~~~~~~~~~s~~a~~~L~~y---------------~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l 436 (509)
T PRK05022 379 -RARLGLRSLRLSPAAQAALLAY---------------DWPGNVRELEHVISRAALLARARGAGRIVTLEAQHL 436 (509)
T ss_pred -HHHcCCCCCCCCHHHHHHHHhC---------------CCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHc
Confidence 111 12357899999988765 39999999999999887776543222 4555554
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.33 E-value=1.1e-11 Score=131.57 Aligned_cols=135 Identities=24% Similarity=0.348 Sum_probs=87.9
Q ss_pred cccChHHHH--HHHHHH-HhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC-CCCccccee
Q 004502 297 SIYGHSWIK--KAVILL-MLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG-SSGVGLTAA 372 (748)
Q Consensus 297 ~i~G~~~~K--~aill~-l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~-~~~~glt~~ 372 (748)
+++||+++- .+++-- +-+| ..+ +++|+||||||||+|++.+++.....+....-. ++..++-.
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~-------~l~-----SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~- 91 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAG-------HLH-----SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLRE- 91 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcC-------CCc-----eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHH-
Confidence 588998852 333333 3333 123 899999999999999999999887766443211 11111100
Q ss_pred eeecccccceeec-cceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeee--cCCCCC
Q 004502 373 VTSDQETGERRLE-AGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAA--ANPIYG 448 (748)
Q Consensus 373 ~~~~~~~g~~~~~-~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa--~Np~~g 448 (748)
.++ +-.. ....+-|+||||++++++..|.+|+..||+|++. +|+| -||.+
T Consensus 92 ----------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii---------------lIGATTENPsF- 145 (436)
T COG2256 92 ----------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII---------------LIGATTENPSF- 145 (436)
T ss_pred ----------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE---------------EEeccCCCCCe-
Confidence 011 1011 1112459999999999999999999999999865 3444 35654
Q ss_pred ccCCCCCccccCCCChhhhccccEEEEecCCCChh
Q 004502 449 TYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPD 483 (748)
Q Consensus 449 ~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~ 483 (748)
.+.++|+||. .+|.+..-.+++
T Consensus 146 ------------~ln~ALlSR~-~vf~lk~L~~~d 167 (436)
T COG2256 146 ------------ELNPALLSRA-RVFELKPLSSED 167 (436)
T ss_pred ------------eecHHHhhhh-heeeeecCCHHH
Confidence 6999999999 667774444333
No 60
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.32 E-value=1.4e-11 Score=145.60 Aligned_cols=210 Identities=14% Similarity=0.189 Sum_probs=134.9
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCC---cEEeccCC-CCC----cccceeeeecccccceeeccceEeeccCceeeecC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRG-SSG----VGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~-~~~----~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
.+|||.|+|||||+.+|+++++.+++ ++...... ... ..+.+... .+...-.+|.+..|++|++||||
T Consensus 349 ~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~lde 424 (638)
T PRK11388 349 FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFLEK 424 (638)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC----cCccCCCCCceeECCCCEEEEcC
Confidence 38999999999999999999998874 22221111 110 01121110 11122357888899999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCC-
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQM- 480 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~- 480 (748)
++.|+.+.|..|+.+++++.++ +.|.....+.++.+|+|+|...... .+.-.+.+.|+.|+...-+-.++.
T Consensus 425 i~~l~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~t~~~l~~~------~~~~~f~~dL~~~l~~~~i~lPpLr 496 (638)
T PRK11388 425 VEYLSPELQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTADLAML------VEQNRFSRQLYYALHAFEITIPPLR 496 (638)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--eCCCCceEEeeEEEEEeccCCHHHH------HhcCCChHHHhhhhceeEEeCCChh
Confidence 9999999999999999998865 3455566677899999999753110 111136677888886544432322
Q ss_pred ChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 481 DPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 481 ~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
+...|. .++.|++ +++-.
T Consensus 497 eR~~Di~~L~~~~l-------------------------------------------------------------~~~~~ 515 (638)
T PRK11388 497 MRREDIPALVNNKL-------------------------------------------------------------RSLEK 515 (638)
T ss_pred hhhhHHHHHHHHHH-------------------------------------------------------------HHHHH
Confidence 221221 2333332 22211
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004502 560 YAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAAL 632 (748)
Q Consensus 560 ~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai 632 (748)
+....+.+++++.+.|..| .||-+.|+|+++++.+-..+ -...|+.+|+...+
T Consensus 516 --~~~~~~~~s~~a~~~L~~y---------------~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 516 --RFSTRLKIDDDALARLVSY---------------RWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred --HhCCCCCcCHHHHHHHHcC---------------CCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 1012357899999988764 39999999999998765443 23478888876554
No 61
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-11 Score=137.31 Aligned_cols=170 Identities=20% Similarity=0.359 Sum_probs=109.4
Q ss_pred cccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEec--cCCCCCcccc
Q 004502 293 SLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT--GRGSSGVGLT 370 (748)
Q Consensus 293 si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~--g~~~~~~glt 370 (748)
.+-.+-||++++|+-|+-.++=|--+.. .+|.| +||+||||+|||.++|.||+.++|.++-. |..+..+.+
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs-----~qGkI-lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeI- 480 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGS-----VQGKI-LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEI- 480 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhccc-----CCCcE-EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhh-
Confidence 3556789999999998887765422221 23333 89999999999999999999999976432 211111111
Q ss_pred eeeeeccccccee----eccceEeec------cCceeeecCCCcCChhh----HHHHHHHHhh-ceEEeeccceeEEe-c
Q 004502 371 AAVTSDQETGERR----LEAGAMVLA------DRGVVCIDEFDKMNDQD----RVAIHEVMEQ-QTVTIAKAGIHASL-N 434 (748)
Q Consensus 371 ~~~~~~~~~g~~~----~~~G~l~la------~~gil~IDEidk~~~~~----~~~L~e~me~-~~i~i~k~g~~~~l-~ 434 (748)
.|.++ -.||.++.+ .+-+++|||+||+.... -++|+|+|+- |.-++...-....+ -
T Consensus 481 --------kGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 481 --------KGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred --------cccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 22211 146666544 57799999999997533 4899999974 32222111111111 1
Q ss_pred cceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHH
Q 004502 435 ARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHV 492 (748)
Q Consensus 435 ~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~i 492 (748)
+++.+|||+|... .||+||+||..+|-+- .+.. ++...||+.-
T Consensus 553 SkVLFicTAN~id-------------tIP~pLlDRMEvIels-GYv~-eEKv~IA~~y 595 (906)
T KOG2004|consen 553 SKVLFICTANVID-------------TIPPPLLDRMEVIELS-GYVA-EEKVKIAERY 595 (906)
T ss_pred hheEEEEeccccc-------------cCChhhhhhhheeecc-CccH-HHHHHHHHHh
Confidence 3788999999976 6999999999776553 3333 3344566543
No 62
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.30 E-value=2.4e-11 Score=137.06 Aligned_cols=160 Identities=23% Similarity=0.244 Sum_probs=95.1
Q ss_pred CcccChHHHHHHHHHH--HhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceee
Q 004502 296 PSIYGHSWIKKAVILL--MLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAV 373 (748)
Q Consensus 296 p~i~G~~~~K~aill~--l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~ 373 (748)
.+|.|.+.+|+.+.-. .+.... ...|.... -.|||+||||||||++++++++.+..+++....+. +....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~--~~~gl~~p--kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~----l~~~~ 299 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQA--SNYGLPTP--RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK----LFGGI 299 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHH--HhcCCCCC--ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH----hcccc
Confidence 3588999988766532 111000 01121111 16999999999999999999999887654432110 11111
Q ss_pred eecccccceeeccceEe---eccCceeeecCCCcCChh------------hHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 374 TSDQETGERRLEAGAMV---LADRGVVCIDEFDKMNDQ------------DRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 374 ~~~~~~g~~~~~~G~l~---la~~gil~IDEidk~~~~------------~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
... ++..+. ..+. ...+.|++|||+|++-.. ....++..|++. .....
T Consensus 300 vGe---se~~l~-~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~ 362 (489)
T CHL00195 300 VGE---SESRMR-QMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------KSPVF 362 (489)
T ss_pred cCh---HHHHHH-HHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------CCceE
Confidence 000 000000 0000 124689999999976331 224455555421 23578
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHH
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
||||+|... .|+++++. |||.+|.+ +.|+.+....|.+..+.
T Consensus 363 vIaTTN~~~-------------~Ld~allR~GRFD~~i~v-~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 363 VVATANNID-------------LLPLEILRKGRFDEIFFL-DLPSLEEREKIFKIHLQ 406 (489)
T ss_pred EEEecCChh-------------hCCHHHhCCCcCCeEEEe-CCcCHHHHHHHHHHHHh
Confidence 999999765 59999997 99999998 77887766666554433
No 63
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.30 E-value=3.7e-11 Score=144.29 Aligned_cols=178 Identities=18% Similarity=0.264 Sum_probs=106.1
Q ss_pred HHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC--CC
Q 004502 288 DLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG--SS 365 (748)
Q Consensus 288 ~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~--~~ 365 (748)
..+...+...++|++.+|+.+.-.+.....+.. .+|. ++||+||||||||++++++++.+...++....+ ..
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-----~~~~-~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~ 385 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-----MKGP-ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRD 385 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-----CCCc-eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCccc
Confidence 344556778899999999988765542211111 1121 799999999999999999999988765432111 00
Q ss_pred CcccceeeeecccccceeeccceE----e--eccCceeeecCCCcCChhh----HHHHHHHHhhc---eEEeeccceeEE
Q 004502 366 GVGLTAAVTSDQETGERRLEAGAM----V--LADRGVVCIDEFDKMNDQD----RVAIHEVMEQQ---TVTIAKAGIHAS 432 (748)
Q Consensus 366 ~~glt~~~~~~~~~g~~~~~~G~l----~--la~~gil~IDEidk~~~~~----~~~L~e~me~~---~i~i~k~g~~~~ 432 (748)
...+.+.. ....|. .+|.+ . ...+.|++|||||++.++. .++|+++|+.. .+.-...+....
T Consensus 386 ~~~i~g~~--~~~~g~---~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 386 EAEIRGHR--RTYVGA---MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HHHHcCCC--CceeCC---CCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 00111000 000010 01111 1 1245699999999997754 37899999852 221111112222
Q ss_pred eccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHH
Q 004502 433 LNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHV 492 (748)
Q Consensus 433 l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~i 492 (748)
+ .++.+|+|+|+.. .++++|++||++ +.+ ..++.+....|+...
T Consensus 461 ~-s~v~~I~TtN~~~-------------~i~~~L~~R~~v-i~~-~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 461 L-SKVIFIATANSID-------------TIPRPLLDRMEV-IEL-SGYTEEEKLEIAKKY 504 (775)
T ss_pred c-CCEEEEEecCCch-------------hCCHHHhCCeeE-Eec-CCCCHHHHHHHHHHH
Confidence 2 3678899999864 599999999974 444 556666556666443
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.28 E-value=3e-11 Score=144.36 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=122.3
Q ss_pred HHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCC-
Q 004502 286 TFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGS- 364 (748)
Q Consensus 286 ~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~- 364 (748)
.+..+...+-..|+||+.++.++.-++...-. ...+..+..| ++||+||||||||.+++++++.+...+.......
T Consensus 444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~-g~~~~~~p~~--~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRA-GLGNPNKPVG--SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhc-CCCCCCCCce--eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 34567788899999999998888777653200 0001011122 6899999999999999999999976443221110
Q ss_pred ----CCcccceeeee--cccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 365 ----SGVGLTAAVTS--DQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 365 ----~~~glt~~~~~--~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
+...+.++... ....|... ..++.....+|++|||+++++++.++.|+++|++|.++-. .|....+. ++.
T Consensus 521 ~~~~~~~~lig~~~gyvg~~~~~~l--~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~~-~~i 596 (731)
T TIGR02639 521 MEKHTVSRLIGAPPGYVGFEQGGLL--TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKADFR-NVI 596 (731)
T ss_pred hhcccHHHHhcCCCCCcccchhhHH--HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccCCC-CCE
Confidence 00011111000 00000000 0112223568999999999999999999999999998743 34433333 688
Q ss_pred EeeecCCCCCccCC------CCCcc----c--cCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 439 VVAAANPIYGTYDR------SLTPT----K--NIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 439 iiaa~Np~~g~~~~------~~~~~----~--ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
+|+|+|........ ..... . .-.++|+|++|||-++.+ .+.+.+.-..|+++.+.
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F-~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHF-NPLSEEVLEKIVQKFVD 663 (731)
T ss_pred EEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEc-CCCCHHHHHHHHHHHHH
Confidence 99999984211100 00000 0 124889999999988887 55666666677766554
No 65
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.27 E-value=5e-11 Score=132.10 Aligned_cols=193 Identities=18% Similarity=0.226 Sum_probs=117.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEee---ccCceeeecCCCcCC-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVL---ADRGVVCIDEFDKMN- 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~l---a~~gil~IDEidk~~- 406 (748)
+|||+||||||||++++++++.+...+..... ..+...... .+.+.+ ...+.. ...+|+||||+|.+.
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~----~~l~~~~~g---~~~~~i-~~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVG----SELVQKFIG---EGARLV-RELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEEeeh----HHHhHhhcc---chHHHH-HHHHHHHHhcCCeEEEEechhhhhc
Confidence 79999999999999999999988765432210 011100000 011111 011111 235799999999872
Q ss_pred ----------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEE
Q 004502 407 ----------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLF 474 (748)
Q Consensus 407 ----------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~ 474 (748)
.+.+..+.+.+.+-. |. .-..++.||||+|... .++++|++ |||..+
T Consensus 239 ~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~~I 297 (389)
T PRK03992 239 KRTDSGTSGDREVQRTLMQLLAEMD------GF--DPRGNVKIIAATNRID-------------ILDPAILRPGRFDRII 297 (389)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcc------cc--CCCCCEEEEEecCChh-------------hCCHHHcCCccCceEE
Confidence 344555666554211 10 0113578999999864 48999996 999988
Q ss_pred EecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHH
Q 004502 475 IVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFL 554 (748)
Q Consensus 475 ~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 554 (748)
.+ +.|+.+....|....+. ...
T Consensus 298 ~v-~~P~~~~R~~Il~~~~~----~~~----------------------------------------------------- 319 (389)
T PRK03992 298 EV-PLPDEEGRLEILKIHTR----KMN----------------------------------------------------- 319 (389)
T ss_pred EE-CCCCHHHHHHHHHHHhc----cCC-----------------------------------------------------
Confidence 87 66777766555443221 100
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 555 KKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 555 rkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
+.+.+. ...|.. .+-..|.+.+.++++.|-..|--+.+..|+.+|+.+|+.-
T Consensus 320 ----------~~~~~~---~~~la~---------------~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 320 ----------LADDVD---LEELAE---------------LTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred ----------CCCcCC---HHHHHH---------------HcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 000000 001111 0134678999999999998888888899999999999987
Q ss_pred HHHh
Q 004502 635 LNFA 638 (748)
Q Consensus 635 ~~~s 638 (748)
+..+
T Consensus 372 ~~~~ 375 (389)
T PRK03992 372 VMGK 375 (389)
T ss_pred Hhcc
Confidence 7643
No 66
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=9.9e-11 Score=135.66 Aligned_cols=195 Identities=19% Similarity=0.203 Sum_probs=122.8
Q ss_pred HHHHHHHcccCcccChHHHHHHHHHHH----hCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC---cEE
Q 004502 286 TFDLLGNSLAPSIYGHSWIKKAVILLM----LGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL---AIS 358 (748)
Q Consensus 286 ~~~~l~~si~p~i~G~~~~K~aill~l----~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~ 358 (748)
....+.+.+...|+||+.+-.++.-++ +|-...+.|-| ..||.||+|+|||.|++++|..+.. ...
T Consensus 481 kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPig-------sFlF~GPTGVGKTELAkaLA~~Lfg~e~ali 553 (786)
T COG0542 481 KLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG-------SFLFLGPTGVGKTELAKALAEALFGDEQALI 553 (786)
T ss_pred HHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCce-------EEEeeCCCcccHHHHHHHHHHHhcCCCccce
Confidence 345677889999999999777666554 44322222222 6899999999999999999998874 111
Q ss_pred eccCC-----CCCcccceeeeecccccceeeccceEeec----cCceeeecCCCcCChhhHHHHHHHHhhceEEeeccce
Q 004502 359 TTGRG-----SSGVGLTAAVTSDQETGERRLEAGAMVLA----DRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGI 429 (748)
Q Consensus 359 ~~g~~-----~~~~glt~~~~~~~~~g~~~~~~G~l~la----~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~ 429 (748)
..+.+ .+-..|.++.-. .-| +-+.|.|.-| .-.|+++|||+|+.|++.+.|+++|++|.++-.+ |.
T Consensus 554 R~DMSEy~EkHsVSrLIGaPPG--YVG--yeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~-Gr 628 (786)
T COG0542 554 RIDMSEYMEKHSVSRLIGAPPG--YVG--YEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ-GR 628 (786)
T ss_pred eechHHHHHHHHHHHHhCCCCC--Cce--eccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC-CC
Confidence 11000 000011111000 000 1123444333 2469999999999999999999999999998554 55
Q ss_pred eEEeccceeEeeecCCCCCccCC---------CCCcccc------CCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 430 HASLNARCSVVAAANPIYGTYDR---------SLTPTKN------IGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 430 ~~~l~~~~~iiaa~Np~~g~~~~---------~~~~~~n------i~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
.+.+. ++.||.|+|-....... .....+. -.++|.|++|+|-++++ .+.+.+.-.+|++..|.
T Consensus 629 ~VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F-~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 629 TVDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPF-NPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEec-cCCCHHHHHHHHHHHHH
Confidence 55554 68999999975321111 1111111 35999999999987777 55666666666655544
No 67
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.26 E-value=5.5e-11 Score=136.60 Aligned_cols=207 Identities=15% Similarity=0.216 Sum_probs=130.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc---E-EeccCCCCCc----ccceeeeecccccceeeccceEeeccCceeeecCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA---I-STTGRGSSGV----GLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEF 402 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~---~-~~~g~~~~~~----glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEi 402 (748)
+|||.|++||||+.+|++++..+++. + .+........ .|.+.. ....+|.....+|.+..|++|++||||+
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~-~~~~~~~~~~~~g~~e~a~~GtL~LdeI 307 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHA-PGAYPNALEGKKGFFEQANGGSVLLDEI 307 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCC-CCCcCCcccCCCChhhhcCCCEEEEeCh
Confidence 89999999999999999999887753 2 2211111100 011100 0001121123467788899999999999
Q ss_pred CcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE-EEecCCCC
Q 004502 403 DKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL-FIVLDQMD 481 (748)
Q Consensus 403 dk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli-~~~~d~~~ 481 (748)
+.|++..|..|+.+++++.+. +.|.....+.++.||+|++..... ..+.-.+.+.|+.|+... +.+++-.+
T Consensus 308 ~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~vRiI~st~~~l~~------l~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 308 GEMSPRMQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQKNLVE------LVQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred hhCCHHHHHHHHHHHhcCCcc--cCCCCcceeeeeEEEEecCCCHHH------HHHcCCccHHHHhhcCeeEEeCCCccc
Confidence 999999999999999998753 445555566788999988765211 011114678899998653 33433222
Q ss_pred hhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHH
Q 004502 482 PDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHY 560 (748)
Q Consensus 482 ~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ 560 (748)
...|. .++.|++. ++
T Consensus 380 R~~Di~~L~~~fl~-------------------------------------------------------------~~--- 395 (520)
T PRK10820 380 RPQDIMPLTELFVA-------------------------------------------------------------RF--- 395 (520)
T ss_pred ChhHHHHHHHHHHH-------------------------------------------------------------HH---
Confidence 22222 23333332 22
Q ss_pred HHhc--CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHH
Q 004502 561 AKHR--IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDV 628 (748)
Q Consensus 561 ar~~--~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv 628 (748)
+++. -.|.+++++.+.|..| .||-+.|+|++++.-+-..+ . ...++.+|+
T Consensus 396 ~~~~g~~~~~ls~~a~~~L~~y---------------~WPGNvreL~nvl~~a~~~~--~-~~~i~~~~~ 447 (520)
T PRK10820 396 ADEQGVPRPKLAADLNTVLTRY---------------GWPGNVRQLKNAIYRALTQL--E-GYELRPQDI 447 (520)
T ss_pred HHHcCCCCCCcCHHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHhC--C-CCcccHHHc
Confidence 2211 2468999999888754 39999999999987664433 2 347888875
No 68
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.25 E-value=5.2e-12 Score=123.20 Aligned_cols=134 Identities=18% Similarity=0.291 Sum_probs=87.8
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCC-CCc----ccceeeeecccccceeeccceEeeccCceeeecC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGS-SGV----GLTAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~-~~~----glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
.+|||+|++||||+.+|+++++.+++. +....... +.. .|.+.. ....+|.....+|.+..|++|++||||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~-~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHE-KGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBC-SSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccc-cccccccccccCCceeeccceEEeecc
Confidence 489999999999999999999998862 22211111 100 111111 111223334567999999999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 472 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl 472 (748)
++.|++..|..|+.+|+++.+. +.|.....+.+++||+|+|...... .++-.+.+.|+.|+..
T Consensus 102 I~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~st~~~l~~~------v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 102 IEDLPPELQAKLLRVLEEGKFT--RLGSDKPVPVDVRIIASTSKDLEEL------VEQGRFREDLYYRLNV 164 (168)
T ss_dssp GGGS-HHHHHHHHHHHHHSEEE--CCTSSSEEE--EEEEEEESS-HHHH------HHTTSS-HHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHhhchhc--cccccccccccceEEeecCcCHHHH------HHcCCChHHHHHHhce
Confidence 9999999999999999999865 3355556778999999999752111 1122467777777643
No 69
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.21 E-value=1.3e-10 Score=132.80 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=137.4
Q ss_pred cccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCC-CC----cccceeeeecccccceeeccceEeeccCceeeec
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGS-SG----VGLTAAVTSDQETGERRLEAGAMVLADRGVVCID 400 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~-~~----~glt~~~~~~~~~g~~~~~~G~l~la~~gil~ID 400 (748)
+.++|+.|++||||+.++++++..+++. +....... .. ..+.+. .+...+|.....+|.+..|++|.+|||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~-~~g~~~~~~~~~~g~~~~a~~Gtl~l~ 239 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH-EKGAFTGANTIRQGRFEQADGGTLFLD 239 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC-CCCCCCCCCcCCCCCeeECCCCEEEEe
Confidence 4489999999999999999999988752 21111100 00 001100 001112333446788999999999999
Q ss_pred CCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE-EEEecCC
Q 004502 401 EFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL-LFIVLDQ 479 (748)
Q Consensus 401 Eidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl-i~~~~d~ 479 (748)
|++.|+...|..|+.+++++.+.- .|.....+.++++|+|+|..... ..++-.+.+.|+.||.. .+.+++-
T Consensus 240 ~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~~------~~~~~~~~~~L~~~l~~~~i~~PpL 311 (469)
T PRK10923 240 EIGDMPLDVQTRLLRVLADGQFYR--VGGYAPVKVDVRIIAATHQNLEQ------RVQEGKFREDLFHRLNVIRVHLPPL 311 (469)
T ss_pred ccccCCHHHHHHHHHHHhcCcEEe--CCCCCeEEeeEEEEEeCCCCHHH------HHHcCCchHHHHHHhcceeecCCCc
Confidence 999999999999999999988653 34444556789999999875211 01122478899999954 4444333
Q ss_pred CChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHH
Q 004502 480 MDPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYI 558 (748)
Q Consensus 480 ~~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi 558 (748)
.+...|. .++.|++. ++
T Consensus 312 reR~~Di~~l~~~~l~-------------------------------------------------------------~~- 329 (469)
T PRK10923 312 RERREDIPRLARHFLQ-------------------------------------------------------------VA- 329 (469)
T ss_pred ccchhhHHHHHHHHHH-------------------------------------------------------------HH-
Confidence 3332222 23444333 11
Q ss_pred HHHHhc--CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004502 559 HYAKHR--IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAAL 632 (748)
Q Consensus 559 ~~ar~~--~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai 632 (748)
++.. -.+.++++|...|..| .||-+.|+|+++++.+-..+. ...|+.+|+...+
T Consensus 330 --~~~~~~~~~~~~~~a~~~L~~~---------------~wpgNv~eL~~~i~~~~~~~~---~~~i~~~~l~~~~ 385 (469)
T PRK10923 330 --ARELGVEAKLLHPETEAALTRL---------------AWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGEL 385 (469)
T ss_pred --HHHcCCCCCCcCHHHHHHHHhC---------------CCCChHHHHHHHHHHHHHhCC---CCcccHHHCcHhh
Confidence 2211 1236899998888764 399999999999988765443 4578888875443
No 70
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.21 E-value=1.3e-10 Score=131.78 Aligned_cols=209 Identities=17% Similarity=0.272 Sum_probs=132.7
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCccccee----eeecccccceeeccceEeeccCceeeecCC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGVGLTAA----VTSDQETGERRLEAGAMVLADRGVVCIDEF 402 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~glt~~----~~~~~~~g~~~~~~G~l~la~~gil~IDEi 402 (748)
.+++|.|++||||+.++++++...++. +...........+... ..+...+|.....+|.+..|++|++||||+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 242 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEI 242 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEech
Confidence 389999999999999999999988752 2211111000000000 001111233334678899999999999999
Q ss_pred CcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEE-ecCCCC
Q 004502 403 DKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFI-VLDQMD 481 (748)
Q Consensus 403 dk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~-~~d~~~ 481 (748)
+.|+...|..|+++++++.+. +.|.....+.++.+|+|+|...... .+.-.+.+.|+.|+...-+ +++-.+
T Consensus 243 ~~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~~~------~~~~~~~~~L~~~l~~~~i~lPpLr~ 314 (445)
T TIGR02915 243 GDLPLNLQAKLLRFLQERVIE--RLGGREEIPVDVRIVCATNQDLKRM------IAEGTFREDLFYRIAEISITIPPLRS 314 (445)
T ss_pred hhCCHHHHHHHHHHHhhCeEE--eCCCCceeeeceEEEEecCCCHHHH------HHcCCccHHHHHHhccceecCCCchh
Confidence 999999999999999998754 3455566778999999999863110 1111467788888864333 322222
Q ss_pred hhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHH
Q 004502 482 PDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHY 560 (748)
Q Consensus 482 ~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ 560 (748)
...|. .++.|++. +|
T Consensus 315 R~~Di~~l~~~~l~-------------------------------------------------------------~~--- 330 (445)
T TIGR02915 315 RDGDAVLLANAFLE-------------------------------------------------------------RF--- 330 (445)
T ss_pred chhhHHHHHHHHHH-------------------------------------------------------------HH---
Confidence 22221 23333322 22
Q ss_pred HHh--cCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHH
Q 004502 561 AKH--RIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDV 628 (748)
Q Consensus 561 ar~--~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv 628 (748)
++. .-.+.++++|...|..|. ||-+.|+|+++++-+-..|. ...++.+|+
T Consensus 331 ~~~~~~~~~~~~~~a~~~L~~~~---------------wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 331 ARELKRKTKGFTDDALRALEAHA---------------WPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred HHHhCCCCCCCCHHHHHHHHhCC---------------CCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 221 112578999999887653 99999999999987654433 346776664
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.7e-10 Score=127.36 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=84.9
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccC------------
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR------------ 362 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~------------ 362 (748)
..+++||+.+++.+.-++..|. -.+ ++||+||||||||++|+.+++.+...-...+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~------l~~-----~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS------ISH-----AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC------CCe-----EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 3468999999888877776551 011 48999999999999999999987532100000
Q ss_pred ---CCCCcccceeeeecccccc----eeec-cc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEe
Q 004502 363 ---GSSGVGLTAAVTSDQETGE----RRLE-AG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASL 433 (748)
Q Consensus 363 ---~~~~~glt~~~~~~~~~g~----~~~~-~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l 433 (748)
......+.++. ..|- ...+ .. .-..++..|++|||++.+..+.+++|+..|++.
T Consensus 82 ~g~~~dv~el~aa~----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p------------- 144 (472)
T PRK14962 82 EGTFMDVIELDAAS----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP------------- 144 (472)
T ss_pred cCCCCccEEEeCcc----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-------------
Confidence 00000111110 0110 0000 00 012345679999999999999999999999852
Q ss_pred cccee-EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 434 NARCS-VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 434 ~~~~~-iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+..+. |++++||. .++++|.+|+. ++.+
T Consensus 145 ~~~vv~Ilattn~~--------------kl~~~L~SR~~-vv~f 173 (472)
T PRK14962 145 PSHVVFVLATTNLE--------------KVPPTIISRCQ-VIEF 173 (472)
T ss_pred CCcEEEEEEeCChH--------------hhhHHHhcCcE-EEEE
Confidence 12233 44555553 48899999995 4444
No 72
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.20 E-value=2.2e-10 Score=126.62 Aligned_cols=191 Identities=19% Similarity=0.244 Sum_probs=115.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEee---ccCceeeecCCCcCC-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVL---ADRGVVCIDEFDKMN- 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~l---a~~gil~IDEidk~~- 406 (748)
++||+||||||||++++++++.+...++.... ..+..... ..+...+. ..+.. ...+|+||||+|.+.
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i~~----s~l~~k~~---ge~~~~lr-~lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG----SEFVQKYL---GEGPRMVR-DVFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh----HHHHHHhc---chhHHHHH-HHHHHHHhcCCeEEEEECHhhhcc
Confidence 69999999999999999999988765432210 00100000 00100000 00111 235799999999763
Q ss_pred ----------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEE
Q 004502 407 ----------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLF 474 (748)
Q Consensus 407 ----------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~ 474 (748)
...+..+.+.+.+-. |. .-..++.+|+|+|... .+++++++ |||..+
T Consensus 253 ~r~~~~~~~d~~~~r~l~~LL~~ld------~~--~~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 253 KRFDAQTGADREVQRILLELLNQMD------GF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLDRKI 311 (398)
T ss_pred ccccccCCccHHHHHHHHHHHHHhh------cc--CCCCCEEEEEecCCch-------------hCCHHHcCCCcccEEE
Confidence 223344555443210 11 1123577899999754 59999997 999998
Q ss_pred EecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHH
Q 004502 475 IVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFL 554 (748)
Q Consensus 475 ~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 554 (748)
.+ +.|+.+....|....+... .. ...++ +
T Consensus 312 ~~-~~P~~~~R~~Il~~~~~~~----~l-------------------------------------------~~dvd---~ 340 (398)
T PTZ00454 312 EF-PLPDRRQKRLIFQTITSKM----NL-------------------------------------------SEEVD---L 340 (398)
T ss_pred Ee-CCcCHHHHHHHHHHHHhcC----CC-------------------------------------------CcccC---H
Confidence 88 7787776655554433210 00 00011 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 555 KKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 555 rkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
. .+|+ .+-..|.+.+.++++-|...|--+.+..|+.+|+.+|+.-
T Consensus 341 ~---~la~--------------------------------~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 341 E---DFVS--------------------------------RPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred H---HHHH--------------------------------HcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 1 0111 0134688999999999999998888999999999999986
Q ss_pred HH
Q 004502 635 LN 636 (748)
Q Consensus 635 ~~ 636 (748)
+.
T Consensus 386 v~ 387 (398)
T PTZ00454 386 VV 387 (398)
T ss_pred HH
Confidence 53
No 73
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=6.8e-10 Score=134.29 Aligned_cols=217 Identities=18% Similarity=0.168 Sum_probs=128.1
Q ss_pred CCCHHHHHHHHHHhcC----------ccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECC
Q 004502 268 IYTPEDLKSIKKIAER----------DDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGD 337 (748)
Q Consensus 268 ~~~~~~~~~i~~l~~~----------~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~ 337 (748)
.++.+++..+-.-+-. .+....|.+.+...|+||+.+..++.-++...... +.+. -|.-.++||+||
T Consensus 471 ~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g-l~~~--~~p~~~~lf~Gp 547 (821)
T CHL00095 471 VVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG-LKNP--NRPIASFLFSGP 547 (821)
T ss_pred ccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc-ccCC--CCCceEEEEECC
Confidence 4667776654333211 22345677889999999999988887776422000 0000 011115899999
Q ss_pred CCccHHHHHHHHHHhCCC---cE-Eecc-CCC---CCcccceeeeecccccceeeccceE----eeccCceeeecCCCcC
Q 004502 338 PSVAKSQLLRAIMNIAPL---AI-STTG-RGS---SGVGLTAAVTSDQETGERRLEAGAM----VLADRGVVCIDEFDKM 405 (748)
Q Consensus 338 pGtGKS~l~r~i~~~~~~---~~-~~~g-~~~---~~~glt~~~~~~~~~g~~~~~~G~l----~la~~gil~IDEidk~ 405 (748)
||+|||.+++.+++.+-. .+ .... ... +...+.++... ..| .-+.|.+ ......|+++||++++
T Consensus 548 ~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~g--yvg--~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 548 TGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPG--YVG--YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred CCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCc--ccC--cCccchHHHHHHhCCCeEEEECChhhC
Confidence 999999999999998732 11 1110 000 00001110000 000 0011222 1223479999999999
Q ss_pred ChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCC---------ccCCCCC---------ccc------cCC
Q 004502 406 NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYG---------TYDRSLT---------PTK------NIG 461 (748)
Q Consensus 406 ~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g---------~~~~~~~---------~~~------ni~ 461 (748)
+++.++.|+++||+|.++-.. |....+ .++.+|.|+|.... .|..... +.+ .-.
T Consensus 624 ~~~v~~~Llq~le~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (821)
T CHL00095 624 HPDIFNLLLQILDDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQF 701 (821)
T ss_pred CHHHHHHHHHHhccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999988653 555555 47999999997421 1211100 000 013
Q ss_pred CChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 462 LPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 462 l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
++|.|++|+|-++.+ .+.+.+.-..|++..+.
T Consensus 702 f~peflnRid~ii~F-~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 702 FRPEFLNRLDEIIVF-RQLTKNDVWEIAEIMLK 733 (821)
T ss_pred cCHHHhccCCeEEEe-CCCCHHHHHHHHHHHHH
Confidence 889999999988887 55566655666655544
No 74
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=4.3e-10 Score=136.41 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=117.3
Q ss_pred HHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC---cEEeccCC
Q 004502 287 FDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRG 363 (748)
Q Consensus 287 ~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~ 363 (748)
+..+...+...|+|++.+..++.-++...... +.+. -|....+||+||||||||.+|+++++.+.. .+...+..
T Consensus 556 l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g-l~~~--~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s 632 (852)
T TIGR03346 556 LLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG-LSDP--NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMS 632 (852)
T ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcc-CCCC--CCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 34556678888999999888777766532000 0000 011126999999999999999999998743 11111100
Q ss_pred --CC---CcccceeeeecccccceeeccceE----eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEec
Q 004502 364 --SS---GVGLTAAVTSDQETGERRLEAGAM----VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434 (748)
Q Consensus 364 --~~---~~glt~~~~~~~~~g~~~~~~G~l----~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~ 434 (748)
.. ...+.++... ..| .-+.|.+ ......|+++||+++++++.++.|+++|++|.++-. .|....+.
T Consensus 633 ~~~~~~~~~~l~g~~~g--~~g--~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~r 707 (852)
T TIGR03346 633 EYMEKHSVARLIGAPPG--YVG--YEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDFR 707 (852)
T ss_pred hhcccchHHHhcCCCCC--ccC--cccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeEEecC
Confidence 00 0001110000 000 0011222 112346999999999999999999999999998743 35444443
Q ss_pred cceeEeeecCCCCCccCC------CCCcc------ccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 435 ARCSVVAAANPIYGTYDR------SLTPT------KNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 435 ~~~~iiaa~Np~~g~~~~------~~~~~------~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
++.||+|+|-....+.. ..... -.-.++|.|+.|+|-++++ .+++.+.-..|+...+.
T Consensus 708 -n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF-~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 708 -NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVF-HPLGREQIARIVEIQLG 777 (852)
T ss_pred -CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEec-CCcCHHHHHHHHHHHHH
Confidence 68899999974321110 00011 1124889999999988887 55666665666655443
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=3.1e-10 Score=136.76 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=119.7
Q ss_pred HHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC---cEEeccCC
Q 004502 287 FDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRG 363 (748)
Q Consensus 287 ~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~ 363 (748)
+..|...+...|+|++.+..++.-++...-. .+.+..+..| .+||+||||+|||.+++++++.+-. .+......
T Consensus 557 l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~-gl~~~~~p~~--~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dms 633 (852)
T TIGR03345 557 VLSLPDRLAERVIGQDHALEAIAERIRTARA-GLEDPRKPLG--VFLLVGPSGVGKTETALALAELLYGGEQNLITINMS 633 (852)
T ss_pred HHHHHHHhcCeEcChHHHHHHHHHHHHHHhc-CCCCCCCCce--EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHH
Confidence 4567788999999999988877766642100 0011111122 5899999999999999999998732 11111100
Q ss_pred -----CCCcccceeeeecccccceeeccceEe----eccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEec
Q 004502 364 -----SSGVGLTAAVTSDQETGERRLEAGAMV----LADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434 (748)
Q Consensus 364 -----~~~~glt~~~~~~~~~g~~~~~~G~l~----la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~ 434 (748)
.+...|.++... ..| .-+.|.+. ....+|++||||++++++.++.|+++|++|.++-. .|..+.+.
T Consensus 634 e~~~~~~~~~l~g~~~g--yvg--~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~vd~~ 708 (852)
T TIGR03345 634 EFQEAHTVSRLKGSPPG--YVG--YGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EGREIDFK 708 (852)
T ss_pred HhhhhhhhccccCCCCC--ccc--ccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CCcEEecc
Confidence 000111111000 000 01223332 23568999999999999999999999999998754 45555554
Q ss_pred cceeEeeecCCCCCccCC-----C-----CCccc------cCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 435 ARCSVVAAANPIYGTYDR-----S-----LTPTK------NIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 435 ~~~~iiaa~Np~~g~~~~-----~-----~~~~~------ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
++.+|.|+|-..+.|.. . ....+ .-.++|+|++|++ ++.+ .+.+.+.-..|+...+.
T Consensus 709 -n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F-~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 709 -NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPY-LPLDDDVLAAIVRLKLD 781 (852)
T ss_pred -ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEe-CCCCHHHHHHHHHHHHH
Confidence 69999999975433221 0 00000 1248999999998 4554 56666666666655443
No 76
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.1e-11 Score=123.81 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=103.1
Q ss_pred HHHHcccCcccChHHHHHHHHHHHhCCccccc---CCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEecc-CCC
Q 004502 289 LLGNSLAPSIYGHSWIKKAVILLMLGGVEKNL---KNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTG-RGS 364 (748)
Q Consensus 289 ~l~~si~p~i~G~~~~K~aill~l~gg~~~~~---~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g-~~~ 364 (748)
.|...+-..+.|++.+|+.+.++......+.. .+..---+..||||+||+|+|||.||+.+|+++..++..++ +.-
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 45556667799999999999887754322111 11101123349999999999999999999999999887654 223
Q ss_pred CCcccceeeeecccccceeec--cceEeeccCceeeecCCCcCCh--------------hhHHHHHHHHhhceEEeeccc
Q 004502 365 SGVGLTAAVTSDQETGERRLE--AGAMVLADRGVVCIDEFDKMND--------------QDRVAIHEVMEQQTVTIAKAG 428 (748)
Q Consensus 365 ~~~glt~~~~~~~~~g~~~~~--~G~l~la~~gil~IDEidk~~~--------------~~~~~L~e~me~~~i~i~k~g 428 (748)
+.+|..+.-+-.-. ...++ ...+..|..||++||||||+.. .+|.+|+..||.-..++...|
T Consensus 134 TEAGYVGEDVENil--lkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqG 211 (408)
T COG1219 134 TEAGYVGEDVENIL--LKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQG 211 (408)
T ss_pred hhccccchhHHHHH--HHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCC
Confidence 34444332110000 00011 1344567899999999999853 578999999998777787666
Q ss_pred eeEEeccceeEeeecCCC
Q 004502 429 IHASLNARCSVVAAANPI 446 (748)
Q Consensus 429 ~~~~l~~~~~iiaa~Np~ 446 (748)
....-+-.|.-+-|+|-.
T Consensus 212 GRKHP~Qe~iqvDT~NIL 229 (408)
T COG1219 212 GRKHPQQEFIQVDTSNIL 229 (408)
T ss_pred CCCCCccceEEEccccee
Confidence 655545567777777753
No 77
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.19 E-value=1.8e-10 Score=137.17 Aligned_cols=160 Identities=19% Similarity=0.256 Sum_probs=100.9
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCcc-----
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGVG----- 368 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~g----- 368 (748)
.++|.....+.+.-.+-.- ..++.+|||.|+|||||+++|++++..+++. +..........+
T Consensus 377 ~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~ 446 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 446 (686)
T ss_pred ceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhh
Confidence 5788766554443222210 1123389999999999999999999988752 211111100011
Q ss_pred cceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCC
Q 004502 369 LTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYG 448 (748)
Q Consensus 369 lt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g 448 (748)
+.+. .+...+|......|.+..|++|++||||++.++.+.|..|+.+++++.+. +.|.....+.++.+|+++|....
T Consensus 447 lfg~-~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~t~~~l~ 523 (686)
T PRK15429 447 LFGH-ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE--RLGSNKIIQTDVRLIAATNRDLK 523 (686)
T ss_pred hcCc-ccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEE--eCCCCCcccceEEEEEeCCCCHH
Confidence 1110 00111222233457778899999999999999999999999999998754 33555556678999999987531
Q ss_pred ccCCCCCccccCCCChhhhccccEEEE
Q 004502 449 TYDRSLTPTKNIGLPDSLLSRFDLLFI 475 (748)
Q Consensus 449 ~~~~~~~~~~ni~l~~~LlsRFdli~~ 475 (748)
.. ...-.+...|+.|+...-+
T Consensus 524 ~~------~~~~~f~~~L~~~l~~~~i 544 (686)
T PRK15429 524 KM------VADREFRSDLYYRLNVFPI 544 (686)
T ss_pred HH------HHcCcccHHHHhccCeeEE
Confidence 10 1112477788888866544
No 78
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.17 E-value=1.9e-10 Score=126.80 Aligned_cols=189 Identities=20% Similarity=0.251 Sum_probs=114.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcCC-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMN- 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~- 406 (748)
++||+||||||||++++++++.+...+.... ...+...... .+...+ ...+..+ ..+|++|||+|.+.
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~~~~~g---~~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVRKYIG---EGARLV-REIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHHHHhhh---HHHHHH-HHHHHHHHhcCCcEEEhhhhhhhcc
Confidence 6999999999999999999998876543221 0111110000 000000 0111111 34699999999873
Q ss_pred ----------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEE
Q 004502 407 ----------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLF 474 (748)
Q Consensus 407 ----------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~ 474 (748)
+..+..+.+.+.+-. +. .-..++.||+|+|... .+++++++ |||..+
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~grfd~~i 288 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATNRPD-------------ILDPALLRPGRFDRII 288 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecCChh-------------hCChhhcCcccCceEE
Confidence 334455656554311 10 1123678999999764 48889986 999987
Q ss_pred EecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHH
Q 004502 475 IVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFL 554 (748)
Q Consensus 475 ~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 554 (748)
.+ +.|+.+....|....+. .... ...++.+
T Consensus 289 ~v-~~P~~~~r~~Il~~~~~----~~~l-------------------------------------------~~~~~~~-- 318 (364)
T TIGR01242 289 EV-PLPDFEGRLEILKIHTR----KMKL-------------------------------------------AEDVDLE-- 318 (364)
T ss_pred Ee-CCcCHHHHHHHHHHHHh----cCCC-------------------------------------------CccCCHH--
Confidence 77 66776665555432211 0000 0001111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 555 KKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 555 rkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
.|... +-..|.+.+.++++.|..+|-.+.+..|+.+|+.+|+.-
T Consensus 319 ---------------------~la~~---------------t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 319 ---------------------AIAKM---------------TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred ---------------------HHHHH---------------cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 11110 123578999999999999998899999999999999874
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=7.8e-10 Score=123.00 Aligned_cols=144 Identities=20% Similarity=0.270 Sum_probs=85.0
Q ss_pred ccCcccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcE----EeccCCCC---
Q 004502 294 LAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAI----STTGRGSS--- 365 (748)
Q Consensus 294 i~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~~~~--- 365 (748)
-+.+++|++.+...|.-++..+ ++. | +||+||||||||++|+.+++.+.... ..+|.-.+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~---------ri~---ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSG---------KIG---HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcC---------CCC---eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 3346889999998888777765 111 4 79999999999999999999876421 11110000
Q ss_pred -Ccccceeee-ecc--cccc---eeeccceEe---eccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecc
Q 004502 366 -GVGLTAAVT-SDQ--ETGE---RRLEAGAMV---LADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA 435 (748)
Q Consensus 366 -~~glt~~~~-~~~--~~g~---~~~~~G~l~---la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~ 435 (748)
..|....+. -+. ..|- ..+...... .....|++|||+++|+.+.+++|+..||+- +.
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~ 150 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-------------PA 150 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-------------CC
Confidence 000000000 000 0010 000000000 112349999999999999999999999852 23
Q ss_pred ceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 436 RCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 436 ~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+.+|.++|... .++++++||+- +|.+
T Consensus 151 ~viFILaTte~~-------------kI~~TI~SRCq-~~~f 177 (484)
T PRK14956 151 HIVFILATTEFH-------------KIPETILSRCQ-DFIF 177 (484)
T ss_pred ceEEEeecCChh-------------hccHHHHhhhh-eeee
Confidence 445555554432 59999999983 4444
No 80
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.16 E-value=1.1e-09 Score=119.25 Aligned_cols=150 Identities=24% Similarity=0.320 Sum_probs=97.8
Q ss_pred cCceeeecCCCcCCh------------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccC
Q 004502 393 DRGVVCIDEFDKMND------------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNI 460 (748)
Q Consensus 393 ~~gil~IDEidk~~~------------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni 460 (748)
..||+|||||||+.. .+|..|+..||.-++++ +.|...+ .++.+||+ |-|...++ -
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T--~~ILFI~~-----GAF~~~kp----~ 316 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKT--DHILFIAS-----GAFHVSKP----S 316 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEEC--CceeEEec-----CCcCCCCh----h
Confidence 789999999999863 37889999999877765 3332222 24555554 44443222 2
Q ss_pred CCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhcccccc
Q 004502 461 GLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRT 540 (748)
Q Consensus 461 ~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (748)
+|-|.|.-||.+++.+ ++.+.+.-. +||.-
T Consensus 317 DlIPEl~GR~Pi~v~L-~~L~~~dL~----~ILte--------------------------------------------- 346 (443)
T PRK05201 317 DLIPELQGRFPIRVEL-DALTEEDFV----RILTE--------------------------------------------- 346 (443)
T ss_pred hccHHHhCccceEEEC-CCCCHHHHH----HHhcC---------------------------------------------
Confidence 4779999999999998 555554322 23320
Q ss_pred ccCCcCCCCCHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcC
Q 004502 541 QRGQKRDTLTIQFLKKYIH-YAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKL 619 (748)
Q Consensus 541 ~~~~~~~~l~~~~lrkyi~-~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~ 619 (748)
+ ....+++|.+ |+-..+.-.++++|.+.|++...++-.. .-.+.+|.|-+++.-.-.-+....
T Consensus 347 ------P--~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~--------~~~iGAR~LrtI~E~~L~d~~Fe~ 410 (443)
T PRK05201 347 ------P--KASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEK--------TENIGARRLHTVMEKLLEDISFEA 410 (443)
T ss_pred ------C--hhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhccc--------ccccchhhHHHHHHHHHHHHhccC
Confidence 0 0236788887 4444577789999999999988764221 134678999998876655555444
Q ss_pred C
Q 004502 620 N 620 (748)
Q Consensus 620 ~ 620 (748)
-
T Consensus 411 p 411 (443)
T PRK05201 411 P 411 (443)
T ss_pred C
Confidence 3
No 81
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.16 E-value=3.4e-10 Score=128.76 Aligned_cols=212 Identities=17% Similarity=0.256 Sum_probs=134.8
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCccc-----ceeeeecccccceeeccceEeeccCceeeecC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGVGL-----TAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~gl-----t~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
.++|+.|++||||++++++++..+++. +.......-...+ .+. .....+|.....+|.+..|++|++||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGH-EKGAFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCC-CCCCCCCCCCCCCCceEECCCCEEEEec
Confidence 389999999999999999999877642 2221111110011 110 0011234444567899999999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe-cCCC
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV-LDQM 480 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~-~d~~ 480 (748)
++.++...|..|+.+++.+.+. +.|.....+.++.+|+|+|..... ..+.-.+.+.|+.|+..+.+- ++-.
T Consensus 246 i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~l~~------~~~~g~~~~~l~~~l~~~~i~~ppLr 317 (457)
T PRK11361 246 IGEMPLVLQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATNRDLQA------MVKEGTFREDLFYRLNVIHLILPPLR 317 (457)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCCCCHHH------HHHcCCchHHHHHHhccceecCCChh
Confidence 9999999999999999998754 445566677889999999976311 011114667788888553332 2222
Q ss_pred ChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 481 DPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 481 ~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
+...|. .++.|+ +.++
T Consensus 318 eR~~di~~l~~~~-------------------------------------------------------------l~~~-- 334 (457)
T PRK11361 318 DRREDISLLANHF-------------------------------------------------------------LQKF-- 334 (457)
T ss_pred hchhhHHHHHHHH-------------------------------------------------------------HHHH--
Confidence 222221 122222 2222
Q ss_pred HHHh--cCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004502 560 YAKH--RIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAAL 632 (748)
Q Consensus 560 ~ar~--~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai 632 (748)
++. .-.+.++++|.+.|..| .||-+.|+|+++++.+-..+. ...++.+|+...+
T Consensus 335 -~~~~~~~~~~~~~~a~~~L~~~---------------~wpgNv~eL~~~~~~~~~~~~---~~~i~~~~l~~~~ 390 (457)
T PRK11361 335 -SSENQRDIIDIDPMAMSLLTAW---------------SWPGNIRELSNVIERAVVMNS---GPIIFSEDLPPQI 390 (457)
T ss_pred -HHHcCCCCCCcCHHHHHHHHcC---------------CCCCcHHHHHHHHHHHHHhCC---CCcccHHHChHhh
Confidence 111 11257899999888754 399999999999988654432 3468888775443
No 82
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.15 E-value=3.3e-11 Score=117.90 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=85.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC----cEEecc--CCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL----AISTTG--RGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~----~~~~~g--~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk 404 (748)
++||+||+|+|||.+++.+++.+.. .+.... ..+...+....+ .....-.+|..-.+++||+|||||||
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~-----~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSV-----SKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHC-----HHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhh-----hhhhhcccceeeccchhhhhhHHHhh
Confidence 8999999999999999999999872 222111 111100000000 00001123444455678999999999
Q ss_pred CCh-----------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCC------------Cccc--c
Q 004502 405 MND-----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSL------------TPTK--N 459 (748)
Q Consensus 405 ~~~-----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~------------~~~~--n 459 (748)
+.+ .+++.|+++||.++++-. .|....+ .++.+|+|+|-......... .... +
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~-~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDT-SNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVE 157 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEG-TTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEe-CCceEEEecccccchhhhhhccccccHHHHHHHHHHHHH
Confidence 999 999999999999999853 3444443 37999999997531111000 0000 1
Q ss_pred CCCChhhhccccEE
Q 004502 460 IGLPDSLLSRFDLL 473 (748)
Q Consensus 460 i~l~~~LlsRFdli 473 (748)
-.++|.|+.|||.|
T Consensus 158 ~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 158 YGFRPEFLGRIDVI 171 (171)
T ss_dssp HTS-HHHHTTSSEE
T ss_pred cCCCHHHHccCCcC
Confidence 25899999999875
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.1e-09 Score=126.10 Aligned_cols=139 Identities=20% Similarity=0.225 Sum_probs=84.2
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccE-EEECCCCccHHHHHHHHHHhCCCcEEeccC--CCC------C
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINM-MMVGDPSVAKSQLLRAIMNIAPLAISTTGR--GSS------G 366 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~i-LL~G~pGtGKS~l~r~i~~~~~~~~~~~g~--~~~------~ 366 (748)
-+|+||+.+++.|.-++..| ..+ |. ||+||||||||+++|.+++.+.......+. +.. .
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-------rl~-----HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-------RLH-----HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-------CCC-----eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 35889999999887777655 112 65 899999999999999999987642111110 000 0
Q ss_pred cccceeee-eccc--cc---------ceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEec
Q 004502 367 VGLTAAVT-SDQE--TG---------ERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434 (748)
Q Consensus 367 ~glt~~~~-~~~~--~g---------~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~ 434 (748)
.|....+. -+.. .| .....+ ..+...|++|||+++|+.+.+++|+..||+- +
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P---~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P 147 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRP---SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------P 147 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhh---hcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------C
Confidence 00000000 0000 01 000011 1134469999999999999999999999952 2
Q ss_pred cceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 435 ARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 435 ~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
..+.+|.++|... .|+++|+||+ .+|.+
T Consensus 148 ~~vrFILaTTe~~-------------kLl~TIlSRC-q~f~f 175 (944)
T PRK14949 148 EHVKFLLATTDPQ-------------KLPVTVLSRC-LQFNL 175 (944)
T ss_pred CCeEEEEECCCch-------------hchHHHHHhh-eEEeC
Confidence 2344444444322 4889999999 55555
No 84
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.15 E-value=4.6e-10 Score=128.67 Aligned_cols=129 Identities=23% Similarity=0.279 Sum_probs=77.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEee---ccCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVL---ADRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~l---a~~gil~IDEidk~~~ 407 (748)
++||+||||||||+++++++..+...++.... ..+...... .+...+. ..+.. ...+|+||||+|.+..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~----~~~~~~~~g---~~~~~l~-~~f~~a~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG----SDFVEMFVG---VGASRVR-DLFEQAKKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccH----HHHHHHHhc---ccHHHHH-HHHHHHHhcCCCEEEEechhhhhh
Confidence 69999999999999999999988765543210 011000000 0000000 01111 1357999999998753
Q ss_pred hh--------------HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--ccc
Q 004502 408 QD--------------RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFD 471 (748)
Q Consensus 408 ~~--------------~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFd 471 (748)
.. .+.|+..|+. . .-...+.||+|+|... .++++|++ |||
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~~-------------~ld~al~r~gRfd 217 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRPD-------------VLDPALLRPGRFD 217 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCChh-------------hcCHHHhcCCcce
Confidence 21 2223333321 0 1123578999999865 58999997 999
Q ss_pred EEEEecCCCChhHhHHHHHHH
Q 004502 472 LLFIVLDQMDPDIDRRISDHV 492 (748)
Q Consensus 472 li~~~~d~~~~~~d~~ia~~i 492 (748)
..+.+ +.|+.+....|..+.
T Consensus 218 ~~i~i-~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 218 RQVVV-DLPDIKGREEILKVH 237 (495)
T ss_pred EEEEc-CCCCHHHHHHHHHHH
Confidence 98887 677777666655443
No 85
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.14 E-value=7.7e-10 Score=116.43 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=88.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~~ 407 (748)
|+||+||+|||||.+++.+-+.++...+........+..++........+...-..|...-+ ..-|+|||+++...+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~ 114 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQP 114 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S--
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCC
Confidence 89999999999999998887766653322111000111111111111111111112222222 234999999998764
Q ss_pred h------hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCC
Q 004502 408 Q------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMD 481 (748)
Q Consensus 408 ~------~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~ 481 (748)
+ ..+.|.++|+.+.+.-.+......+ .++.++||+||..|+. .+++.|++.|-++. + +.|+
T Consensus 115 d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr~----------~is~R~~r~f~i~~-~-~~p~ 181 (272)
T PF12775_consen 115 DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGRN----------PISPRFLRHFNILN-I-PYPS 181 (272)
T ss_dssp -TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTEEEEE------T
T ss_pred CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCCC----------CCChHHhhheEEEE-e-cCCC
Confidence 3 3578899999988764333333333 4789999999987775 69999999995444 4 5677
Q ss_pred hhHhHHHHHHHHHhhh
Q 004502 482 PDIDRRISDHVLRMHR 497 (748)
Q Consensus 482 ~~~d~~ia~~il~~~~ 497 (748)
.+.-..|-..++..|.
T Consensus 182 ~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 182 DESLNTIFSSILQSHL 197 (272)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhhc
Confidence 6766777777776553
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.14 E-value=6.6e-09 Score=114.66 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcchhhh
Q 004502 568 ELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEM 647 (748)
Q Consensus 568 ~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~~~~~ 647 (748)
.+++++.+.+...... ....+|....+++.|.-.|..+.+..|+.+|+..|+..+..+.....+
T Consensus 220 ~~~~~~l~~i~~~~~~-------------~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i--- 283 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQ-------------EHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELI--- 283 (365)
T ss_pred CCChhHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3566777666655432 123578888899998888888888999999999999877543322111
Q ss_pred hHHHHHHhhhhhcCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcccCccccHHHHHHHHhcc----cCCCCCHHH
Q 004502 648 EEREQERQREQEKNPRAEHPGGNDRADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTG----MDAHYSRAE 723 (748)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 723 (748)
.+.+..++.-+..+.. .... ....+...++.+.+... +....+..+
T Consensus 284 -------------------------~~l~~~~~~~l~ai~~----~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 333 (365)
T TIGR02928 284 -------------------------RGLPTHSKLVLLAIAN----LAAN-DEDPFRTGEVYEVYKEVCEDIGVDPLTQRR 333 (365)
T ss_pred -------------------------HcCCHHHHHHHHHHHH----HHhc-CCCCccHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 1112222211222222 2221 12235555555533332 224588899
Q ss_pred HHHHHHHHHhcCCEEEe
Q 004502 724 ITFLLEKLQDENRVMIA 740 (748)
Q Consensus 724 ~~~~l~~l~~~~~~~~~ 740 (748)
+.+++.+|...|.|...
T Consensus 334 ~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 334 ISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHhcCCeEEE
Confidence 99999999999999874
No 87
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.14 E-value=7.6e-10 Score=123.96 Aligned_cols=137 Identities=20% Similarity=0.336 Sum_probs=82.8
Q ss_pred cccChHHHHH--H-HHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceee
Q 004502 297 SIYGHSWIKK--A-VILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAV 373 (748)
Q Consensus 297 ~i~G~~~~K~--a-ill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~ 373 (748)
+++|++.+.. . +.-.+.++ ..+ |++|+||||||||++++.+++.....+........+.. .
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~-------~~~-----~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~----~ 76 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG-------RLS-----SMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVK----D 76 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC-------CCc-----eEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHH----H
Confidence 5788887632 2 44334333 112 89999999999999999999987665433211111000 0
Q ss_pred eecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeec--CCCCCccC
Q 004502 374 TSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAA--NPIYGTYD 451 (748)
Q Consensus 374 ~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~--Np~~g~~~ 451 (748)
.+.... .. . .......+++++|||+++++...++.|+..|+.+.+ .+++++ ||..
T Consensus 77 ir~ii~--~~-~-~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i---------------ilI~att~n~~~---- 133 (413)
T PRK13342 77 LREVIE--EA-R-QRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSF---- 133 (413)
T ss_pred HHHHHH--HH-H-HhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE---------------EEEEeCCCChhh----
Confidence 000000 00 0 000122467999999999999999999999987643 344443 4432
Q ss_pred CCCCccccCCCChhhhccccEEEEecCCCChh
Q 004502 452 RSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPD 483 (748)
Q Consensus 452 ~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~ 483 (748)
.++++|+||| .++.+ .+++.+
T Consensus 134 ---------~l~~aL~SR~-~~~~~-~~ls~e 154 (413)
T PRK13342 134 ---------EVNPALLSRA-QVFEL-KPLSEE 154 (413)
T ss_pred ---------hccHHHhccc-eeeEe-CCCCHH
Confidence 5889999999 45555 344443
No 88
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.13 E-value=9.5e-10 Score=119.58 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=98.4
Q ss_pred ccCceeeecCCCcCCh------------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCcccc
Q 004502 392 ADRGVVCIDEFDKMND------------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKN 459 (748)
Q Consensus 392 a~~gil~IDEidk~~~------------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~n 459 (748)
+..||+|||||||+.. .+|..|+..||.-+++. +.|...+ .++.+||+ |-|...++
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T--~~ILFI~~-----GAF~~~kp---- 313 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKT--DHILFIAA-----GAFQLAKP---- 313 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEEC--CceeEEec-----CCcCCCCh----
Confidence 5789999999999863 37889999999877765 4332222 24555554 44432221
Q ss_pred CCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccc
Q 004502 460 IGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKR 539 (748)
Q Consensus 460 i~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (748)
-+|-|.|.-||.+++.+ .+.+.+.-. +||.-
T Consensus 314 ~DlIPEl~GR~Pi~v~L-~~L~~edL~----rILte-------------------------------------------- 344 (441)
T TIGR00390 314 SDLIPELQGRFPIRVEL-QALTTDDFE----RILTE-------------------------------------------- 344 (441)
T ss_pred hhccHHHhCccceEEEC-CCCCHHHHH----HHhcC--------------------------------------------
Confidence 24789999999999998 555554322 23320
Q ss_pred cccCCcCCCCCHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhc
Q 004502 540 TQRGQKRDTLTIQFLKKYIHYAK-HRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMK 618 (748)
Q Consensus 540 ~~~~~~~~~l~~~~lrkyi~~ar-~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~ 618 (748)
+ ...++++|.++-+ ..+.-.++++|.+.|++...++-.. .-.+.+|.|-+++.-.-.-+...
T Consensus 345 -------P--~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~--------~~~iGAR~LrtilE~~l~d~~fe 407 (441)
T TIGR00390 345 -------P--KNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEK--------TENIGARRLHTVLERLLEDISFE 407 (441)
T ss_pred -------C--hhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhccc--------ccccchhhHHHHHHHHHHHHHhc
Confidence 0 0135778876544 3367789999999999988764222 13467899999887666555555
Q ss_pred CC
Q 004502 619 LN 620 (748)
Q Consensus 619 ~~ 620 (748)
.-
T Consensus 408 ~p 409 (441)
T TIGR00390 408 AP 409 (441)
T ss_pred CC
Confidence 43
No 89
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.13 E-value=1.2e-09 Score=132.01 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=116.0
Q ss_pred HHHHHHHcccCcccChHHHHHHHHHHHh----CCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC---cEE
Q 004502 286 TFDLLGNSLAPSIYGHSWIKKAVILLML----GGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL---AIS 358 (748)
Q Consensus 286 ~~~~l~~si~p~i~G~~~~K~aill~l~----gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~---~~~ 358 (748)
.+..|...+...|+|++.+...+.-++. |..... +.--++||+||||||||++|+++++.+.. .+.
T Consensus 558 ~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i 630 (857)
T PRK10865 558 KLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMV 630 (857)
T ss_pred HHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 3456788899999999997666665553 321111 11116999999999999999999998743 121
Q ss_pred eccCC--CC---Ccccceeeee--cccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeE
Q 004502 359 TTGRG--SS---GVGLTAAVTS--DQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHA 431 (748)
Q Consensus 359 ~~g~~--~~---~~glt~~~~~--~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~ 431 (748)
..+.. .. ...+.++... ....|.. -.+++.....+|++|||+++++++.++.|+++|++|.++-. .|...
T Consensus 631 ~id~se~~~~~~~~~LiG~~pgy~g~~~~g~--l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~-~gr~v 707 (857)
T PRK10865 631 RIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY--LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG-QGRTV 707 (857)
T ss_pred EEEhHHhhhhhhHHHHhCCCCcccccchhHH--HHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC-CceEE
Confidence 11100 00 0001100000 0000000 01111222458999999999999999999999999988632 34444
Q ss_pred EeccceeEeeecCCCCCc----cCCC--CCccc------cCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 432 SLNARCSVVAAANPIYGT----YDRS--LTPTK------NIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 432 ~l~~~~~iiaa~Np~~g~----~~~~--~~~~~------ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
.+. ++.+|+|+|..... +... ..+.+ .-.+.|+|++|+|-++++ .+...+.-..|+++.+.
T Consensus 708 d~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF-~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 708 DFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVF-HPLGEQHIASIAQIQLQ 780 (857)
T ss_pred eec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEec-CCCCHHHHHHHHHHHHH
Confidence 433 57789999974211 1110 00011 125899999999988887 44555555556655544
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=99.12 E-value=1e-09 Score=118.82 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=80.7
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE----EeccCCCCCccccee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGRGSSGVGLTAA 372 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~~~~~~glt~~ 372 (748)
+++|++.+...+.-.+.++ ..+ |+||+||||||||++++++++.+.... +..-..+...|. .
T Consensus 14 ~~~g~~~~~~~L~~~~~~~-------~~~-----~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~--~ 79 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG-------NMP-----NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI--D 79 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC-------CCc-----eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH--H
Confidence 4679999887766544443 112 899999999999999999998763210 100000000000 0
Q ss_pred eeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCC
Q 004502 373 VTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDR 452 (748)
Q Consensus 373 ~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~ 452 (748)
..++... .+.-....+......+++|||+|.|+...+++|+..||.- +..+.++.++|...
T Consensus 80 ~vr~~i~-~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~----- 140 (319)
T PLN03025 80 VVRNKIK-MFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSS----- 140 (319)
T ss_pred HHHHHHH-HHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc-----
Confidence 0000000 0000000000123469999999999999999999999831 22344666777543
Q ss_pred CCCccccCCCChhhhccccEEEEe
Q 004502 453 SLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 453 ~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+.++|.||+ .++.+
T Consensus 141 --------~i~~~L~SRc-~~i~f 155 (319)
T PLN03025 141 --------KIIEPIQSRC-AIVRF 155 (319)
T ss_pred --------ccchhHHHhh-hcccC
Confidence 4778999998 34444
No 91
>CHL00176 ftsH cell division protein; Validated
Probab=99.12 E-value=6.2e-10 Score=129.57 Aligned_cols=164 Identities=22% Similarity=0.257 Sum_probs=89.0
Q ss_pred CcccChHHHHHHHHHHH--hCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceee
Q 004502 296 PSIYGHSWIKKAVILLM--LGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAV 373 (748)
Q Consensus 296 p~i~G~~~~K~aill~l--~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~ 373 (748)
.+|.|.+.+|+.+.-.+ +....+...-|.. -.-++||+||||||||+++++++..+..+++..... .+....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~--~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s----~f~~~~ 256 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAK--IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGS----EFVEMF 256 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCC--CCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHH----HHHHHh
Confidence 35778888776554332 1111110001111 122799999999999999999999886654432110 010000
Q ss_pred eecccccceeeccceEee---ccCceeeecCCCcCCh-----------hhHHHHHHHHhhceEEeeccceeEEeccceeE
Q 004502 374 TSDQETGERRLEAGAMVL---ADRGVVCIDEFDKMND-----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSV 439 (748)
Q Consensus 374 ~~~~~~g~~~~~~G~l~l---a~~gil~IDEidk~~~-----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~i 439 (748)
. ..+...+. ..+.. ....|+||||+|.+.. .....|.+.+..-. |. .-+.++.|
T Consensus 257 ~---g~~~~~vr-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d------g~--~~~~~ViV 324 (638)
T CHL00176 257 V---GVGAARVR-DLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD------GF--KGNKGVIV 324 (638)
T ss_pred h---hhhHHHHH-HHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc------cc--cCCCCeeE
Confidence 0 00000000 00111 1246999999998732 22233444432110 11 11346789
Q ss_pred eeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHHHHH
Q 004502 440 VAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRISDH 491 (748)
Q Consensus 440 iaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ia~~ 491 (748)
|||+|... .++++|++ |||..+.+ +.|+.+....|.+.
T Consensus 325 IaaTN~~~-------------~LD~ALlRpGRFd~~I~v-~lPd~~~R~~IL~~ 364 (638)
T CHL00176 325 IAATNRVD-------------ILDAALLRPGRFDRQITV-SLPDREGRLDILKV 364 (638)
T ss_pred EEecCchH-------------hhhhhhhccccCceEEEE-CCCCHHHHHHHHHH
Confidence 99999864 47889986 99998888 67777665554443
No 92
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.12 E-value=4.1e-10 Score=120.77 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=76.9
Q ss_pred cceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC-CccCCCCCccccCCCCh
Q 004502 386 AGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY-GTYDRSLTPTKNIGLPD 464 (748)
Q Consensus 386 ~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~ 464 (748)
.|.+..|++||+.++|+.|.+.+.+..|+.+++++.+.+. |....++.+..|||++|+.. ..+ .+.....
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e~~~~-------~~~k~~e 299 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRF-------KSNKKNE 299 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHHHhhh-------hccccch
Confidence 4899999999999999999999999999999999998876 34446777889999999973 222 1123579
Q ss_pred hhhccccEEEEecCCCChhHhHHHHHHHHHh
Q 004502 465 SLLSRFDLLFIVLDQMDPDIDRRISDHVLRM 495 (748)
Q Consensus 465 ~LlsRFdli~~~~d~~~~~~d~~ia~~il~~ 495 (748)
||+|||. ++.+.-..+.....+|.+..+..
T Consensus 300 af~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 300 ALLDRII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred hhhhceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 9999997 45554555666666777766553
No 93
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-09 Score=115.55 Aligned_cols=157 Identities=22% Similarity=0.318 Sum_probs=97.5
Q ss_pred cccChHHHHHHHHHHH---------hCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCc
Q 004502 297 SIYGHSWIKKAVILLM---------LGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGV 367 (748)
Q Consensus 297 ~i~G~~~~K~aill~l---------~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~ 367 (748)
+|.|.+++|+-|--+. |.|..+ +.+ .|||+||||||||+||++++...+..++.. +..
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~Girr------PWk---gvLm~GPPGTGKTlLAKAvATEc~tTFFNV----Sss 279 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRR------PWK---GVLMVGPPGTGKTLLAKAVATECGTTFFNV----SSS 279 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhccc------ccc---eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe----chh
Confidence 5778888766544333 333111 233 599999999999999999999876544322 111
Q ss_pred ccceeeeeccccccee-eccceEeec---cCceeeecCCCcCCh------------hhHHHHHHHHhhceEEeeccceeE
Q 004502 368 GLTAAVTSDQETGERR-LEAGAMVLA---DRGVVCIDEFDKMND------------QDRVAIHEVMEQQTVTIAKAGIHA 431 (748)
Q Consensus 368 glt~~~~~~~~~g~~~-~~~G~l~la---~~gil~IDEidk~~~------------~~~~~L~e~me~~~i~i~k~g~~~ 431 (748)
.|+. ...|+.- +-.-.+.+| ...++||||||.+.. ...+-|+--|+ |...
T Consensus 280 tltS-----KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~ 345 (491)
T KOG0738|consen 280 TLTS-----KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQG 345 (491)
T ss_pred hhhh-----hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------cccc
Confidence 2221 1122210 000011122 357999999997642 34455666665 3222
Q ss_pred Ee--ccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 432 SL--NARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 432 ~l--~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
++ ...+.|+||+|-.+ +|..+|+.||.-.+++ +.|+.+....+.+..|.
T Consensus 346 t~e~~k~VmVLAATN~PW-------------diDEAlrRRlEKRIyI-PLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 346 TLENSKVVMVLAATNFPW-------------DIDEALRRRLEKRIYI-PLPDAEARSALIKILLR 396 (491)
T ss_pred ccccceeEEEEeccCCCc-------------chHHHHHHHHhhheee-eCCCHHHHHHHHHHhhc
Confidence 22 23588999999987 7999999999988777 67888777776665544
No 94
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.11 E-value=1.1e-08 Score=114.04 Aligned_cols=127 Identities=17% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcchhhh
Q 004502 568 ELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEM 647 (748)
Q Consensus 568 ~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~~~~~ 647 (748)
.+++++.+.+.+.... ....+|....+++.|...|.-+.+..|+.+|+..|+.-+..+.......
T Consensus 228 ~~~~~~l~~i~~~~~~-------------~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~-- 292 (394)
T PRK00411 228 VVDDEVLDLIADLTAR-------------EHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLR-- 292 (394)
T ss_pred CCCHhHHHHHHHHHHH-------------hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHh--
Confidence 4677888888776543 1235788888999888889889999999999999998775433321111
Q ss_pred hHHHHHHhhhhhcCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcccCccccHHHHHHHHhcc----cCCCCCHHH
Q 004502 648 EEREQERQREQEKNPRAEHPGGNDRADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTG----MDAHYSRAE 723 (748)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 723 (748)
+.+..+ + .+..++...... ....++..++.+.+... +....+...
T Consensus 293 --------------------------~L~~~~--k--~~L~ai~~~~~~-~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~ 341 (394)
T PRK00411 293 --------------------------TLPLHE--K--LLLRAIVRLLKK-GGDEVTTGEVYEEYKELCEELGYEPRTHTR 341 (394)
T ss_pred --------------------------cCCHHH--H--HHHHHHHHHHhc-CCCcccHHHHHHHHHHHHHHcCCCcCcHHH
Confidence 111112 1 122222222221 11235555555444332 223446799
Q ss_pred HHHHHHHHHhcCCEEEe
Q 004502 724 ITFLLEKLQDENRVMIA 740 (748)
Q Consensus 724 ~~~~l~~l~~~~~~~~~ 740 (748)
+-+.+.+|...|.|...
T Consensus 342 ~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 342 FYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHhcCCeEEE
Confidence 99999999999999863
No 95
>PRK15115 response regulator GlrR; Provisional
Probab=99.11 E-value=1.2e-09 Score=124.02 Aligned_cols=212 Identities=20% Similarity=0.301 Sum_probs=133.2
Q ss_pred cccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCC-CCCc----ccceeeeecccccceeeccceEeeccCceeeec
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRG-SSGV----GLTAAVTSDQETGERRLEAGAMVLADRGVVCID 400 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~-~~~~----glt~~~~~~~~~g~~~~~~G~l~la~~gil~ID 400 (748)
+.++++.|++||||+.+++++++..++. +...... .+.. .+.+. .+...+|......|.+..+++|++|||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH-ARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC-CcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 3489999999999999999999988752 2111110 0000 01110 011123434456788999999999999
Q ss_pred CCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCC
Q 004502 401 EFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQM 480 (748)
Q Consensus 401 Eidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~ 480 (748)
|++.++.+.|..|+.+++++.+. ..|.....+.++.+|+|++..... ....-.+.+.|+.|+...-+-.++.
T Consensus 236 ~i~~l~~~~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~~~l~~------~~~~~~f~~~l~~~l~~~~i~lPpL 307 (444)
T PRK15115 236 EIGDMPAPLQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATHRDLPK------AMARGEFREDLYYRLNVVSLKIPAL 307 (444)
T ss_pred ccccCCHHHHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCCCCHHH------HHHcCCccHHHHHhhceeeecCCCh
Confidence 99999999999999999998763 335555667789999999864210 0111146777888876543322221
Q ss_pred C-hhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHH
Q 004502 481 D-PDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYI 558 (748)
Q Consensus 481 ~-~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi 558 (748)
. ...|. .++.|++. ++
T Consensus 308 r~R~eDi~~l~~~~l~-------------------------------------------------------------~~- 325 (444)
T PRK15115 308 AERTEDIPLLANHLLR-------------------------------------------------------------QA- 325 (444)
T ss_pred HhccccHHHHHHHHHH-------------------------------------------------------------HH-
Confidence 1 11111 13333222 21
Q ss_pred HHHHhc--CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHH
Q 004502 559 HYAKHR--IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAA 631 (748)
Q Consensus 559 ~~ar~~--~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~A 631 (748)
++.+ ..+.++++|.+.|..| .||-+.|+|+++++.+-..+. ...++.+|+...
T Consensus 326 --~~~~~~~~~~~~~~a~~~L~~~---------------~WpgNvreL~~~i~~~~~~~~---~~~i~~~~l~~~ 380 (444)
T PRK15115 326 --AERHKPFVRAFSTDAMKRLMTA---------------SWPGNVRQLVNVIEQCVALTS---SPVISDALVEQA 380 (444)
T ss_pred --HHHhCCCCCCcCHHHHHHHHhC---------------CCCChHHHHHHHHHHHHHhCC---CCccChhhhhhh
Confidence 2211 1235899999988764 399999999999988765432 446777776543
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=4.1e-09 Score=116.03 Aligned_cols=138 Identities=21% Similarity=0.236 Sum_probs=82.1
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEeccCCC-----------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGS----------- 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~----------- 364 (748)
+|+||+.+++.+.-++..|. .+ | +||+||||+|||++++.+++.+.-.....+...
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-------~~-----h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-------IH-----HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK 84 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-------CC-----eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 58899999999888777651 11 4 699999999999999999988752110000000
Q ss_pred -CCcccceeeeeccc--cc--c--eeecc-ceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecc
Q 004502 365 -SGVGLTAAVTSDQE--TG--E--RRLEA-GAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA 435 (748)
Q Consensus 365 -~~~glt~~~~~~~~--~g--~--~~~~~-G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~ 435 (748)
...++.. -+.. .+ + ...+. ... ..++..|++|||+++|+...+++|+..||+- +.
T Consensus 85 ~~~~d~~~---~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~ 148 (363)
T PRK14961 85 GLCLDLIE---IDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQ 148 (363)
T ss_pred CCCCceEE---ecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-------------CC
Confidence 0000000 0000 00 0 00000 000 1234469999999999999999999999852 22
Q ss_pred ceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 436 RCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 436 ~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+.+|.++|... .+++++.||+ ..+.+
T Consensus 149 ~~~fIl~t~~~~-------------~l~~tI~SRc-~~~~~ 175 (363)
T PRK14961 149 HIKFILATTDVE-------------KIPKTILSRC-LQFKL 175 (363)
T ss_pred CeEEEEEcCChH-------------hhhHHHHhhc-eEEeC
Confidence 333444443221 4889999999 55555
No 97
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.10 E-value=8.1e-09 Score=119.45 Aligned_cols=303 Identities=15% Similarity=0.122 Sum_probs=161.0
Q ss_pred ccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccE-EEECCCCccHHHHHHHHHHhCCC-----------cEEecc
Q 004502 294 LAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINM-MMVGDPSVAKSQLLRAIMNIAPL-----------AISTTG 361 (748)
Q Consensus 294 i~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~i-LL~G~pGtGKS~l~r~i~~~~~~-----------~~~~~g 361 (748)
+.+.+.|.+.-...|...|...... . +.-++ +|.|+||||||..++++.+.+.. .+++.+
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg---s-----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ---S-----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc---C-----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 3445778877655555554432110 0 11144 69999999999999999765421 234443
Q ss_pred CCCCCc-ccceeeee-----cccccce---eecc--ceEeeccC--ceeeecCCCcCChhhHHHHHHHHhhceEEeeccc
Q 004502 362 RGSSGV-GLTAAVTS-----DQETGER---RLEA--GAMVLADR--GVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAG 428 (748)
Q Consensus 362 ~~~~~~-glt~~~~~-----~~~~g~~---~~~~--G~l~la~~--gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g 428 (748)
...... .....+.. .+..|.. .++. ..+....+ -||+|||||.+....+..|+..++--.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~------- 897 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT------- 897 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-------
Confidence 221111 00000000 0111100 0000 00001112 389999999998877788888876321
Q ss_pred eeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCC
Q 004502 429 IHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGG 508 (748)
Q Consensus 429 ~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~ 508 (748)
...+++.|||.+|+..-.. .|.+.+.+||..-.+.+++.+.++...|..+-+
T Consensus 898 ---~s~SKLiLIGISNdlDLpe----------rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RA--------------- 949 (1164)
T PTZ00112 898 ---KINSKLVLIAISNTMDLPE----------RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERL--------------- 949 (1164)
T ss_pred ---ccCCeEEEEEecCchhcch----------hhhhhhhhccccccccCCCCCHHHHHHHHHHHH---------------
Confidence 1134688999999753111 356677888865333335555544333322211
Q ss_pred CCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhccc
Q 004502 509 LDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSS 588 (748)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~ 588 (748)
.. ..-.++++|.+++++....
T Consensus 950 --------------------------------------------------e~----A~gVLdDdAIELIArkVAq----- 970 (1164)
T PTZ00112 950 --------------------------------------------------EN----CKEIIDHTAIQLCARKVAN----- 970 (1164)
T ss_pred --------------------------------------------------Hh----CCCCCCHHHHHHHHHhhhh-----
Confidence 11 1125788998888874432
Q ss_pred CCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhhhcchhhhhHHHHHHhhhhhcCCCCCCCC
Q 004502 589 SNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQREQEKNPRAEHPG 668 (748)
Q Consensus 589 ~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (748)
....+|....++|.|-.. .....|+++||.+|+.-+..+.....+ .
T Consensus 971 --------~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~srI~e~I---k-------------------- 1016 (1164)
T PTZ00112 971 --------VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDSPLTNAI---N-------------------- 1016 (1164)
T ss_pred --------cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhhhHHHHH---H--------------------
Confidence 234678888888887654 345699999999999766443211111 0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhcccCccccHHHHHHHHhcc--------cCCCCCHHHHHHHHHHHHhcCCEEEe
Q 004502 669 GNDRADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTG--------MDAHYSRAEITFLLEKLQDENRVMIA 740 (748)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~~~~~~~ 740 (748)
+ .+...++ .+..++... ...+...++..++.+.+... +....+. .+.+.|.+|..-|.|.+.
T Consensus 1017 -----t--LPlHqKL-VLlALIlLl-k~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1017 -----Y--LPWPFKM-FLTCLIVEL-RMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred -----c--CCHHHHH-HHHHHHHHH-hhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCeEEec
Confidence 1 1122222 122223222 21111124544444433332 2234456 899999999999999885
Q ss_pred CC
Q 004502 741 DG 742 (748)
Q Consensus 741 ~~ 742 (748)
-+
T Consensus 1087 p~ 1088 (1164)
T PTZ00112 1087 PY 1088 (1164)
T ss_pred CC
Confidence 43
No 98
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=4.5e-09 Score=121.20 Aligned_cols=141 Identities=24% Similarity=0.293 Sum_probs=85.9
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEeccCCCC--------Cc
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSS--------GV 367 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~--------~~ 367 (748)
+|+||+.+++.|.-++.+|. .+ | +||+|++|||||++++.+++.+.-.....+.... ..
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR-------L~-----HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR-------LH-----HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC-------CC-----eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 57899999999888877651 12 4 4899999999999999999987532111000000 00
Q ss_pred c-cceeeeeccc--ccc----eeecc--ceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 368 G-LTAAVTSDQE--TGE----RRLEA--GAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 368 g-lt~~~~~~~~--~g~----~~~~~--G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
| +.-.+.-+.. .|- ..++. -.-..+...|++|||+++|+....++|+..||+- +..+.
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~ 151 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVK 151 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeE
Confidence 0 0000000100 000 00000 0001234569999999999999999999999863 23455
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+|.++|... .|+++|+||+ ..|.+
T Consensus 152 FILaTtd~~-------------KIp~TIrSRC-q~f~F 175 (830)
T PRK07003 152 FILATTDPQ-------------KIPVTVLSRC-LQFNL 175 (830)
T ss_pred EEEEECChh-------------hccchhhhhe-EEEec
Confidence 555555433 5899999999 66665
No 99
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.09 E-value=6.8e-10 Score=123.55 Aligned_cols=191 Identities=19% Similarity=0.274 Sum_probs=113.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~~ 407 (748)
++||+||||||||++++++++.+...+.... +..+...... .+... -...+..| ...|+||||+|.+..
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~----~seL~~k~~G---e~~~~-vr~lF~~A~~~~P~ILfIDEID~l~~ 290 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVV----GSELIQKYLG---DGPKL-VRELFRVAEENAPSIVFIDEIDAIGT 290 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEe----cchhhhhhcc---hHHHH-HHHHHHHHHhCCCcEEeHHHHHHHhc
Confidence 7999999999999999999998766442211 0111111000 00000 01111122 346999999987632
Q ss_pred -----------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEE
Q 004502 408 -----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLF 474 (748)
Q Consensus 408 -----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~ 474 (748)
+.+..+.+.+.+-. |.. -..++.||+|+|... .+++++++ |||..+
T Consensus 291 kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd~~I 349 (438)
T PTZ00361 291 KRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMATNRIE-------------SLDPALIRPGRIDRKI 349 (438)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEecCChH-------------HhhHHhccCCeeEEEE
Confidence 22344455443210 110 123578999999754 48899985 999998
Q ss_pred EecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHH
Q 004502 475 IVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFL 554 (748)
Q Consensus 475 ~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 554 (748)
.+ +.|+.+....|....+. .... ...++ +
T Consensus 350 ~~-~~Pd~~~R~~Il~~~~~----k~~l-------------------------------------------~~dvd---l 378 (438)
T PTZ00361 350 EF-PNPDEKTKRRIFEIHTS----KMTL-------------------------------------------AEDVD---L 378 (438)
T ss_pred Ee-CCCCHHHHHHHHHHHHh----cCCC-------------------------------------------CcCcC---H
Confidence 88 77777765555443221 1000 00011 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 555 KKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 555 rkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
..++ . .+-..|...+.++++-|--.|--+.+..|+.+|+.+|++-
T Consensus 379 ~~la---~--------------------------------~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 379 EEFI---M--------------------------------AKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHH---H--------------------------------hcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 1111 0 0124577888899999988888888999999999999986
Q ss_pred HH
Q 004502 635 LN 636 (748)
Q Consensus 635 ~~ 636 (748)
+.
T Consensus 424 v~ 425 (438)
T PTZ00361 424 VL 425 (438)
T ss_pred HH
Confidence 54
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.07 E-value=9.4e-10 Score=114.64 Aligned_cols=146 Identities=18% Similarity=0.293 Sum_probs=89.9
Q ss_pred cccChHHH--HHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE----EeccCCCCCcccc
Q 004502 297 SIYGHSWI--KKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGRGSSGVGLT 370 (748)
Q Consensus 297 ~i~G~~~~--K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~~~~~~glt 370 (748)
+.+|++.+ ..+++..++-.. ... .++|+||||||||+|+|.++......- .++...+...+
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~------~ip-----SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~d-- 205 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN------RIP-----SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTND-- 205 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC------CCC-----ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHH--
Confidence 57788774 367777777441 122 699999999999999999998776531 11111111000
Q ss_pred eeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeec--CCCCC
Q 004502 371 AAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAA--NPIYG 448 (748)
Q Consensus 371 ~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~--Np~~g 448 (748)
+++..... +.-........|+||||+.++++.+|..++...|.|.|+ +|+|+ ||.+
T Consensus 206 ---vR~ife~a---q~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~---------------lIGATTENPSF- 263 (554)
T KOG2028|consen 206 ---VRDIFEQA---QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT---------------LIGATTENPSF- 263 (554)
T ss_pred ---HHHHHHHH---HHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE---------------EEecccCCCcc-
Confidence 11100000 000011123569999999999999999999999988764 44443 5544
Q ss_pred ccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 004502 449 TYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDH 491 (748)
Q Consensus 449 ~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~ 491 (748)
.|..+|+||+ .+|++ .+...+.-..|..+
T Consensus 264 ------------qln~aLlSRC-~VfvL-ekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 264 ------------QLNAALLSRC-RVFVL-EKLPVNAVVTILMR 292 (554)
T ss_pred ------------chhHHHHhcc-ceeEe-ccCCHHHHHHHHHH
Confidence 6899999999 55666 44444433344333
No 101
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.3e-10 Score=124.51 Aligned_cols=156 Identities=22% Similarity=0.277 Sum_probs=96.7
Q ss_pred cccChHHHHHHHHHHHhCCc---ccccCCC-ccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCccccee
Q 004502 297 SIYGHSWIKKAVILLMLGGV---EKNLKNG-THLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAA 372 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~---~~~~~~~-~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~ 372 (748)
+|-|++.+|+.+--+..-+. .+...-| .+-+ .|||+||||||||+++|++|+.+...+... .+..|...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk---GVLlyGPPGC~KT~lAkalAne~~~nFlsv----kgpEL~sk 507 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK---GVLLYGPPGCGKTLLAKALANEAGMNFLSV----KGPELFSK 507 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc---eEEEECCCCcchHHHHHHHhhhhcCCeeec----cCHHHHHH
Confidence 46689999988775543221 1111222 1223 599999999999999999999887654221 01122211
Q ss_pred eeecccccceeecc---ceEeeccCceeeecCCCcCCh-----------hhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 373 VTSDQETGERRLEA---GAMVLADRGVVCIDEFDKMND-----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 373 ~~~~~~~g~~~~~~---G~l~la~~gil~IDEidk~~~-----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
.+. .+|..+.. .+-.. ...|+|+||||.+.. .+++.|+.-|+ |+... .++.
T Consensus 508 ~vG---eSEr~ir~iF~kAR~~-aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD---------G~e~~--k~V~ 572 (693)
T KOG0730|consen 508 YVG---ESERAIREVFRKARQV-APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD---------GLEAL--KNVL 572 (693)
T ss_pred hcC---chHHHHHHHHHHHhhc-CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc---------ccccc--CcEE
Confidence 111 11111110 11112 237999999997643 34566666665 22222 3689
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHH
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRI 488 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~i 488 (748)
||||+|... .|+++|++ |||-++.+ +.||.+....|
T Consensus 573 ViAATNRpd-------------~ID~ALlRPGRlD~iiyV-plPD~~aR~~I 610 (693)
T KOG0730|consen 573 VIAATNRPD-------------MIDPALLRPGRLDRIIYV-PLPDLEARLEI 610 (693)
T ss_pred EEeccCChh-------------hcCHHHcCCcccceeEee-cCccHHHHHHH
Confidence 999999875 69999999 99999998 77877765443
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.06 E-value=1.6e-09 Score=127.65 Aligned_cols=150 Identities=18% Similarity=0.255 Sum_probs=85.7
Q ss_pred cccChHHHHH--HHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeee
Q 004502 297 SIYGHSWIKK--AVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVT 374 (748)
Q Consensus 297 ~i~G~~~~K~--aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~ 374 (748)
+++|++.+.. ..+..++.. +... |++|+||||||||++++++++.....+....... .++. ..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~------~~~~-----slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~--~~i~--di 93 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKA------DRVG-----SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL--AGVK--DL 93 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhc------CCCc-----eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh--hhhH--HH
Confidence 5789988653 333333322 1112 8999999999999999999987754332111000 0100 00
Q ss_pred ecccccceeeccceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCC
Q 004502 375 SDQETGERRLEAGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRS 453 (748)
Q Consensus 375 ~~~~~g~~~~~~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~ 453 (748)
+.... . .. ..+ .....++++|||++.++...+.+|+..||++.+ .+++++++....
T Consensus 94 r~~i~-~--a~-~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~I---------------iLI~aTTenp~~---- 150 (725)
T PRK13341 94 RAEVD-R--AK-ERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTI---------------TLIGATTENPYF---- 150 (725)
T ss_pred HHHHH-H--HH-HHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceE---------------EEEEecCCChHh----
Confidence 00000 0 00 000 112456999999999999999999999987643 345544332111
Q ss_pred CCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 004502 454 LTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVL 493 (748)
Q Consensus 454 ~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il 493 (748)
.+.++|+||+. +|.+ .+.+.+....+..+++
T Consensus 151 -------~l~~aL~SR~~-v~~l-~pLs~edi~~IL~~~l 181 (725)
T PRK13341 151 -------EVNKALVSRSR-LFRL-KSLSDEDLHQLLKRAL 181 (725)
T ss_pred -------hhhhHhhcccc-ceec-CCCCHHHHHHHHHHHH
Confidence 47899999974 4444 4455444444444433
No 103
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.06 E-value=1.9e-09 Score=122.85 Aligned_cols=214 Identities=21% Similarity=0.268 Sum_probs=136.5
Q ss_pred cccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCccccee-e---eecccccceeeccceEeeccCceeeecC
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGVGLTAA-V---TSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~glt~~-~---~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
++++++.|++||||++++++++...++. +...........+... . .+...+|...-..|.+..|++|++||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 3489999999999999999999987752 2221111000000000 0 0111122223356888899999999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE-EEEecCCC
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL-LFIVLDQM 480 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl-i~~~~d~~ 480 (748)
++.++.+.|..|+++++++.+.. .|.....+.++.+|+|+|...... ...-.+.+.|+.|+.. .+.+++-.
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~~~------~~~~~f~~~L~~rl~~~~i~lPpLr 308 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATHQNLEAL------VRQGKFREDLFHRLNVIRIHLPPLR 308 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCCCCHHHH------HHcCCcHHHHHHHhCcceecCCCcc
Confidence 99999999999999999988653 344455666788999998763110 1111467788998875 44443333
Q ss_pred ChhHhH-HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 481 DPDIDR-RISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 481 ~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
+...|. .++.|++. ++
T Consensus 309 ~R~~Di~~l~~~~l~-------------------------------------------------------------~~-- 325 (463)
T TIGR01818 309 ERREDIPRLARHFLA-------------------------------------------------------------LA-- 325 (463)
T ss_pred cchhhHHHHHHHHHH-------------------------------------------------------------HH--
Confidence 322222 23444333 11
Q ss_pred HHHhc--CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004502 560 YAKHR--IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAAL 632 (748)
Q Consensus 560 ~ar~~--~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai 632 (748)
++.. -.+.++++|...|..| .||-+.|+|+++++.+-..|. ...++.+|+...+
T Consensus 326 -~~~~~~~~~~~~~~a~~~L~~~---------------~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 326 -ARELDVEPKLLDPEALERLKQL---------------RWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred -HHHhCCCCCCcCHHHHHHHHhC---------------CCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 1111 1246899999888765 399999999999988765543 4578888876554
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=1.5e-08 Score=116.76 Aligned_cols=141 Identities=21% Similarity=0.264 Sum_probs=84.0
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC------------C
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG------------S 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~------------~ 364 (748)
+|+|++.+++.|.-++..+.- .| .+||+|+||+|||++++.+++.+.......+.. .
T Consensus 17 dIIGQe~vv~~L~~ai~~~rl------~H-----a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGRL------HH-----AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCCC------Ce-----EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhcc
Confidence 589999999998888876510 12 479999999999999999999764321110000 0
Q ss_pred CCcccceeeeecccccc----eeecc-ce-EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 365 SGVGLTAAVTSDQETGE----RRLEA-GA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 365 ~~~glt~~~~~~~~~g~----~~~~~-G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
...++. .+......|. ..++. .. -..+...|++|||+++|+....++|+..||+. +..+.
T Consensus 86 ~~~Dvl-EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~ 151 (709)
T PRK08691 86 RYVDLL-EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVK 151 (709)
T ss_pred CccceE-EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcE
Confidence 000110 0000000110 00110 00 01234579999999999999999999999852 23345
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+|.++|... .++.+++||+ +.|.+
T Consensus 152 fILaTtd~~-------------kL~~TIrSRC-~~f~f 175 (709)
T PRK08691 152 FILATTDPH-------------KVPVTVLSRC-LQFVL 175 (709)
T ss_pred EEEEeCCcc-------------ccchHHHHHH-hhhhc
Confidence 555554332 4888999998 43433
No 105
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=5.6e-09 Score=119.31 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=83.4
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC------------C
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG------------S 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~------------~ 364 (748)
+|+|++.+++.|.-++..|.- .| .+||+||||+|||++|+.+++.+.-.....+.. .
T Consensus 16 dVIGQe~vv~~L~~aI~~grl------~H-----AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g 84 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGRL------HH-----AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEG 84 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCCC------Ce-----EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcC
Confidence 689999999999888876611 12 569999999999999999999875311000000 0
Q ss_pred CCccc---ceeeeeccccc--ce--eeccc--eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecc
Q 004502 365 SGVGL---TAAVTSDQETG--ER--RLEAG--AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA 435 (748)
Q Consensus 365 ~~~gl---t~~~~~~~~~g--~~--~~~~G--~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~ 435 (748)
...++ .++. ..+ +. .+... .-..+...|++|||+++|+....++|+..||+- +.
T Consensus 85 ~hpDviEIDAAs----~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~ 147 (702)
T PRK14960 85 RFIDLIEIDAAS----RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PE 147 (702)
T ss_pred CCCceEEecccc----cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CC
Confidence 00011 1100 001 00 00000 001123459999999999999999999999852 22
Q ss_pred ceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 436 RCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 436 ~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+.+|.++|... .++++++||+ .+|.+
T Consensus 148 ~v~FILaTtd~~-------------kIp~TIlSRC-q~feF 174 (702)
T PRK14960 148 HVKFLFATTDPQ-------------KLPITVISRC-LQFTL 174 (702)
T ss_pred CcEEEEEECChH-------------hhhHHHHHhh-heeec
Confidence 334444444322 4788999999 44554
No 106
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.03 E-value=1.4e-09 Score=113.26 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=90.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE------EeccCCCCC--cccceeeeecccccceeeccceEeeccCceeeecCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI------STTGRGSSG--VGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEF 402 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~------~~~g~~~~~--~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEi 402 (748)
++||.|++||||-.+||+++..+|+.- ...|..... ..+.+.. -| ..-..|.+.+|++|.+++|||
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~a-----pg-~~gk~GffE~AngGTVlLDeI 302 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHA-----PG-DEGKKGFFEQANGGTVLLDEI 302 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCC-----CC-CCCccchhhhccCCeEEeehh
Confidence 799999999999999999999999831 112211110 0111111 01 123579999999999999999
Q ss_pred CcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE
Q 004502 403 DKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 472 (748)
Q Consensus 403 dk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl 472 (748)
..|++..|..|+.++.+|++. +-|.......++.||+|+--.-.. +.+.-.+...|+-|..+
T Consensus 303 gEmSp~lQaKLLRFL~DGtFR--RVGee~Ev~vdVRVIcatq~nL~~------lv~~g~fReDLfyRLNV 364 (511)
T COG3283 303 GEMSPRLQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQVNLVE------LVQKGKFREDLFYRLNV 364 (511)
T ss_pred hhcCHHHHHHHHHHhcCCcee--ecCCcceEEEEEEEEecccccHHH------HHhcCchHHHHHHHhhe
Confidence 999999999999999999864 668888888899999998754110 01111355666666643
No 107
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.03 E-value=2.6e-09 Score=127.89 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=89.2
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC----------cEEeccCCCC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL----------AISTTGRGSS 365 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~----------~~~~~g~~~~ 365 (748)
..++|++.....++-.|..+ ..-|++|+||||||||++++.+++.+-. .++....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~--- 246 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM--- 246 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH---
Confidence 35889988666555444433 1118999999999999999999987521 1111100
Q ss_pred Ccccceeeeecccccceeecc-ceE---eeccCceeeecCCCcCC---------hhhHHHHHHHHhhceEEeeccceeEE
Q 004502 366 GVGLTAAVTSDQETGERRLEA-GAM---VLADRGVVCIDEFDKMN---------DQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 366 ~~glt~~~~~~~~~g~~~~~~-G~l---~la~~gil~IDEidk~~---------~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
..+.+. ....|+|.-.- ..+ ....+.|+||||++.+. .+..+.|..+|+.|.
T Consensus 247 -~~l~a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~----------- 311 (731)
T TIGR02639 247 -GSLLAG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK----------- 311 (731)
T ss_pred -HHHhhh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-----------
Confidence 011110 01112221110 011 01235799999999874 234566777776543
Q ss_pred eccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 004502 433 LNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVL 493 (748)
Q Consensus 433 l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il 493 (748)
+.+|+|+|+.. |+ ..+..+++|.+||.. +.+ ..|+.+.-..|.+.+.
T Consensus 312 ----i~~IgaTt~~e--~~------~~~~~d~al~rRf~~-i~v-~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 312 ----LRCIGSTTYEE--YK------NHFEKDRALSRRFQK-IDV-GEPSIEETVKILKGLK 358 (731)
T ss_pred ----eEEEEecCHHH--HH------HHhhhhHHHHHhCce-EEe-CCCCHHHHHHHHHHHH
Confidence 56889999842 21 123578999999985 444 6667666555555443
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=5.9e-09 Score=118.89 Aligned_cols=140 Identities=18% Similarity=0.235 Sum_probs=83.5
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC------------C
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG------------S 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~------------~ 364 (748)
+|+||+.+++.+.-++..| ...| .+||+||||+|||++++.+++.+.......+.. .
T Consensus 17 diiGq~~~v~~L~~~i~~~------rl~h-----a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ------KVHH-----AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC------CCCe-----EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 5789999999888777655 1111 378999999999999999998765311000000 0
Q ss_pred CCcccceeeeeccccc----ceeec-cc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 365 SGVGLTAAVTSDQETG----ERRLE-AG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 365 ~~~glt~~~~~~~~~g----~~~~~-~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
+..++.. +......| ...++ .. .-..++..|++|||+++|+.+.+++|+..||+. |..+.
T Consensus 86 ~~~dlie-idaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~ 151 (546)
T PRK14957 86 SFIDLIE-IDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVK 151 (546)
T ss_pred CCCceEE-eecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCce
Confidence 0001100 00000000 00000 00 012345679999999999999999999999963 22333
Q ss_pred -EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 439 -VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 439 -iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
|++|+++. .++++++||+ .+|.+
T Consensus 152 fIL~Ttd~~--------------kil~tI~SRc-~~~~f 175 (546)
T PRK14957 152 FILATTDYH--------------KIPVTILSRC-IQLHL 175 (546)
T ss_pred EEEEECChh--------------hhhhhHHHhe-eeEEe
Confidence 44444432 4788899999 55665
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=6.1e-09 Score=118.06 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=85.6
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEec--------cCCC----
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT--------GRGS---- 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~--------g~~~---- 364 (748)
+++||+.+.+.+.-++..|. -.| ++||+||||||||++|+.+++.+....... +.-.
T Consensus 22 dliGq~~vv~~L~~ai~~~r------i~~-----a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~ 90 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR------LAG-----GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS 90 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC------CCc-----eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence 57899999998877776551 012 799999999999999999999875421111 1000
Q ss_pred ----CCcccceeeeecccccc----eeec-cc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEec
Q 004502 365 ----SGVGLTAAVTSDQETGE----RRLE-AG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLN 434 (748)
Q Consensus 365 ----~~~glt~~~~~~~~~g~----~~~~-~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~ 434 (748)
...++. .+.....+|. ..++ +. .-..++..|++|||++.++....++|+..||+. +
T Consensus 91 i~~~~h~Dv~-eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p 156 (507)
T PRK06645 91 FNNHNHPDII-EIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------P 156 (507)
T ss_pred HhcCCCCcEE-EeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------C
Confidence 000000 0000000110 0000 00 012346789999999999999999999999842 3
Q ss_pred cceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 435 ARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 435 ~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
..+.+|.+++... .+++++.+|+ .+|.+
T Consensus 157 ~~~vfI~aTte~~-------------kI~~tI~SRc-~~~ef 184 (507)
T PRK06645 157 PHIIFIFATTEVQ-------------KIPATIISRC-QRYDL 184 (507)
T ss_pred CCEEEEEEeCChH-------------HhhHHHHhcc-eEEEc
Confidence 3445555544322 4889999999 55555
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=5.8e-09 Score=118.98 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=83.7
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEe----ccCC--------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAIST----TGRG-------- 363 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~----~g~~-------- 363 (748)
+|+||+.+++.|.-++..+. .+ | +||+||||+|||++++.+++.+.-.... +|.-
T Consensus 17 divGq~~v~~~L~~~~~~~~-------l~-----ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY-------LH-----HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC-------CC-----eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 58899999999988887651 12 5 6999999999999999999987532100 0100
Q ss_pred CCCcccceeeeecccccc--e--eeccc--eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 364 SSGVGLTAAVTSDQETGE--R--RLEAG--AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 364 ~~~~glt~~~~~~~~~g~--~--~~~~G--~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
....++.. +......|- . .++.- .-..+...|++|||+++|+++..++|+..||+- |..+
T Consensus 85 g~~~d~~e-idaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~ 150 (509)
T PRK14958 85 GRFPDLFE-VDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHV 150 (509)
T ss_pred CCCceEEE-EcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCe
Confidence 00000000 000000110 0 00000 001123469999999999999999999999952 3344
Q ss_pred eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+|.++|... .++++++||+ .+|.+
T Consensus 151 ~fIlattd~~-------------kl~~tI~SRc-~~~~f 175 (509)
T PRK14958 151 KFILATTDHH-------------KLPVTVLSRC-LQFHL 175 (509)
T ss_pred EEEEEECChH-------------hchHHHHHHh-hhhhc
Confidence 4444444322 4888899998 44444
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=5.1e-09 Score=117.80 Aligned_cols=142 Identities=16% Similarity=0.220 Sum_probs=83.5
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc----EEeccC--------C
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA----ISTTGR--------G 363 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~----~~~~g~--------~ 363 (748)
.+++||+.+++.+.-++..|. -.| ++||+||||+|||++|+.+++.+.-. ...+|. .
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r------i~h-----a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK------IPQ-----SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCc-----eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 357899999998876666551 012 69999999999999999999865211 000000 0
Q ss_pred CCCcccceeeeeccccc--ce--eec-cceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 364 SSGVGLTAAVTSDQETG--ER--RLE-AGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 364 ~~~~glt~~~~~~~~~g--~~--~~~-~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
....++.- +......| +. .++ .... +.+...|++|||++.|+.+.+++|+..||+- |..+
T Consensus 82 ~~~~Dv~e-idaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~~v 147 (491)
T PRK14964 82 SNHPDVIE-IDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------APHV 147 (491)
T ss_pred cCCCCEEE-EecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------CCCe
Confidence 00111100 00000011 00 000 0001 2345679999999999999999999999952 2234
Q ss_pred eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+|.+++... .++.++.||+ ..|.+
T Consensus 148 ~fIlatte~~-------------Kl~~tI~SRc-~~~~f 172 (491)
T PRK14964 148 KFILATTEVK-------------KIPVTIISRC-QRFDL 172 (491)
T ss_pred EEEEEeCChH-------------HHHHHHHHhh-eeeec
Confidence 4444443322 4889999999 44554
No 112
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.00 E-value=2e-08 Score=104.92 Aligned_cols=146 Identities=20% Similarity=0.182 Sum_probs=99.8
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
.||+||||.+.++-+.-..|..+||+--. ..+|.|+|.-..+--... ...-..+|..||||. ||
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRGTd-~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRGTD-IESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC--------------cEEEEEcCCceeeecccC-CcCCCCCCHhhhhhe-eE
Confidence 48999999999999999999999996421 246666775421110000 111126999999998 77
Q ss_pred EEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHH
Q 004502 474 FIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQF 553 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (748)
+...++..++ -+.|.++ ..
T Consensus 356 I~t~py~~~E-ireIi~i----Ra-------------------------------------------------------- 374 (450)
T COG1224 356 ISTRPYSREE-IREIIRI----RA-------------------------------------------------------- 374 (450)
T ss_pred EecCCCCHHH-HHHHHHH----hh--------------------------------------------------------
Confidence 7765544333 2222211 10
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 554 LKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 554 lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
+ --.-.|+++|.++|.+.-. .-|.|--..|+--|.-.|+.+++..|+.+||++|..
T Consensus 375 --------~-ee~i~l~~~Ale~L~~ig~---------------etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 375 --------K-EEDIELSDDALEYLTDIGE---------------ETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred --------h-hhccccCHHHHHHHHhhch---------------hhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 0 0122588999988876542 246788888888899999999999999999999999
Q ss_pred HHHHhhh
Q 004502 634 ALNFAIY 640 (748)
Q Consensus 634 l~~~sl~ 640 (748)
||-.+-.
T Consensus 431 lF~D~kr 437 (450)
T COG1224 431 LFLDVKR 437 (450)
T ss_pred HHhhHHH
Confidence 9976544
No 113
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.2e-10 Score=118.47 Aligned_cols=173 Identities=24% Similarity=0.292 Sum_probs=108.3
Q ss_pred cccChHHHHHHHHHHHhCC--cccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeee
Q 004502 297 SIYGHSWIKKAVILLMLGG--VEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVT 374 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg--~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~ 374 (748)
+|-|.+.+|.++--...=. .+.....|--.+..-+|||+||||||||++|+++++.++..+...+. ..+
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~----s~l----- 163 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV----SNL----- 163 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec----ccc-----
Confidence 5778888877664433211 01111122234445589999999999999999999988654321110 011
Q ss_pred ecccccceeeccce-----Eeec---cCceeeecCCCcCChhhHHHHHHHHhh--ceEEeeccceeEEeccceeEeeecC
Q 004502 375 SDQETGERRLEAGA-----MVLA---DRGVVCIDEFDKMNDQDRVAIHEVMEQ--QTVTIAKAGIHASLNARCSVVAAAN 444 (748)
Q Consensus 375 ~~~~~g~~~~~~G~-----l~la---~~gil~IDEidk~~~~~~~~L~e~me~--~~i~i~k~g~~~~l~~~~~iiaa~N 444 (748)
+++|.-++-. +.+| .+.|+||||+|.+-..-+..=||+|.. ..+-..=.|....-+.++.|+||+|
T Consensus 164 ----t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 164 ----TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ----chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 2233322222 2233 357999999997643223344555432 1110111344455566799999999
Q ss_pred CCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhh
Q 004502 445 PIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMH 496 (748)
Q Consensus 445 p~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~ 496 (748)
... ++..++++|+.-.|.+ +.|+....++|.+-+|...
T Consensus 240 RP~-------------DlDeAiiRR~p~rf~V-~lP~~~qR~kILkviLk~e 277 (386)
T KOG0737|consen 240 RPF-------------DLDEAIIRRLPRRFHV-GLPDAEQRRKILKVILKKE 277 (386)
T ss_pred CCc-------------cHHHHHHHhCcceeee-CCCchhhHHHHHHHHhccc
Confidence 875 7999999999999998 7888888888888887743
No 114
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=6.4e-09 Score=118.55 Aligned_cols=138 Identities=21% Similarity=0.270 Sum_probs=84.2
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEE---------ecc----
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAIS---------TTG---- 361 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~---------~~g---- 361 (748)
.+|+||+.+++.|.-++..|. .+ | +||+|++|+|||++++.+++.+.-.-. -+|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-------Lp-----HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-------LH-----HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-------Cc-----eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 358999999998888887651 12 5 599999999999999999998753100 000
Q ss_pred -------CCCCCcccceeeeeccccc--c-eeeccceE---eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccc
Q 004502 362 -------RGSSGVGLTAAVTSDQETG--E-RRLEAGAM---VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAG 428 (748)
Q Consensus 362 -------~~~~~~glt~~~~~~~~~g--~-~~~~~G~l---~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g 428 (748)
.......+.+.. ..| + ..+..... ......|++|||+++|+....++|+..||+-
T Consensus 84 C~~I~aG~hpDviEIdAas----~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-------- 151 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAAS----NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-------- 151 (700)
T ss_pred HHHHHcCCCCcceEecccc----cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC--------
Confidence 000000000000 000 0 00000000 1123459999999999999999999999852
Q ss_pred eeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 429 IHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 429 ~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+.++.+|.++|... .|+++++||+ ..|.+
T Consensus 152 -----P~~v~FILaTtep~-------------kLlpTIrSRC-q~f~f 180 (700)
T PRK12323 152 -----PEHVKFILATTDPQ-------------KIPVTVLSRC-LQFNL 180 (700)
T ss_pred -----CCCceEEEEeCChH-------------hhhhHHHHHH-Hhccc
Confidence 23444454444322 5899999999 55555
No 115
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.97 E-value=7e-09 Score=117.47 Aligned_cols=135 Identities=18% Similarity=0.297 Sum_probs=89.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCccccee-e---eecccccceeeccceEeeccCceeeecCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGVGLTAA-V---TSDQETGERRLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~glt~~-~---~~~~~~g~~~~~~G~l~la~~gil~IDEid 403 (748)
++++.|++||||+.++++++...++. +...........+... . .+...+|.....+|.+..|++|++||||++
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccc
Confidence 79999999999999999999887752 2221111110010000 0 000112222335788999999999999999
Q ss_pred cCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 404 KMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 404 k~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
.|++..|..|+.+++.+.+. +.|.....+.++.+|+|++...... ...-.+...|+.|+..+
T Consensus 244 ~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~~~~~------~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 244 DISPMMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLAAE------VNAGRFRQDLYYRLNVV 305 (441)
T ss_pred cCCHHHHHHHHHHHccCcEE--eCCCCceeeeceEEEEeCCCCHHHH------HHcCCchHHHHHHhccc
Confidence 99999999999999998864 3355566677889999987753110 01113677788887543
No 116
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.97 E-value=1.5e-08 Score=104.00 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=108.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC----cEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL----AISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~----~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~ 406 (748)
+++|+|+||||||++++++++.+.. .+++... .+.... . + .+. .+...++++|||++.++
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-----~~~~~~-----~-~-~~~----~~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-----ELAQAD-----P-E-VLE----GLEQADLVCLDDVEAIA 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-----HHHHhH-----H-H-HHh----hcccCCEEEEeChhhhc
Confidence 8999999999999999999987532 1222110 000000 0 0 000 01234699999999998
Q ss_pred hhh--HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCC-hhhhcccc--EEEEecCCCC
Q 004502 407 DQD--RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLP-DSLLSRFD--LLFIVLDQMD 481 (748)
Q Consensus 407 ~~~--~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~-~~LlsRFd--li~~~~d~~~ 481 (748)
... +..|..+++... . .+..+|.++|.....+ .+. +.|.+||. ..+.+ ++++
T Consensus 104 ~~~~~~~~L~~~l~~~~----~--------~~~~iIits~~~~~~~----------~~~~~~L~~r~~~~~~i~l-~~l~ 160 (226)
T TIGR03420 104 GQPEWQEALFHLYNRVR----E--------AGGRLLIAGRAAPAQL----------PLRLPDLRTRLAWGLVFQL-PPLS 160 (226)
T ss_pred CChHHHHHHHHHHHHHH----H--------cCCeEEEECCCChHHC----------CcccHHHHHHHhcCeeEec-CCCC
Confidence 754 778888776321 0 1124566666543222 233 78899985 45555 4444
Q ss_pred hhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHH
Q 004502 482 PDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYA 561 (748)
Q Consensus 482 ~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~a 561 (748)
.+.+..+. +.+.
T Consensus 161 ~~e~~~~l-----------------------------------------------------------------~~~~--- 172 (226)
T TIGR03420 161 DEEKIAAL-----------------------------------------------------------------QSRA--- 172 (226)
T ss_pred HHHHHHHH-----------------------------------------------------------------HHHH---
Confidence 43332222 2111
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004502 562 KHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAAL 632 (748)
Q Consensus 562 r~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai 632 (748)
. .....+++++.+.|... ++-++|+|..++..+.+.|.-..+ .|+.+.|.+++
T Consensus 173 ~-~~~~~~~~~~l~~L~~~----------------~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 173 A-RRGLQLPDEVADYLLRH----------------GSRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred H-HcCCCCCHHHHHHHHHh----------------ccCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 1 12345788888888773 466899999999999987766654 79999888765
No 117
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.1e-09 Score=116.54 Aligned_cols=168 Identities=21% Similarity=0.272 Sum_probs=102.2
Q ss_pred cccChHHHHHHHHHHHhCCcc--cccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeee
Q 004502 297 SIYGHSWIKKAVILLMLGGVE--KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVT 374 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~--~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~ 374 (748)
+|-|.+++|.-|+-.+--.-. .-...|.+.|+ .|||+||||||||.+|+++|....-.+.. -++ ..|.-..+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRS--GILLYGPPGTGKTLlAKAVATEcsL~FlS-VKG---PELLNMYV 746 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRS--GILLYGPPGTGKTLLAKAVATECSLNFLS-VKG---PELLNMYV 746 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccc--eeEEECCCCCchHHHHHHHHhhceeeEEe-ecC---HHHHHHHh
Confidence 456899999988755421100 00113444455 89999999999999999999987654322 121 11211111
Q ss_pred eccccc-ceeeccceEeeccCceeeecCCCcCChh-------------hHHHHHHHHhhceEEeeccceeEEeccceeEe
Q 004502 375 SDQETG-ERRLEAGAMVLADRGVVCIDEFDKMNDQ-------------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVV 440 (748)
Q Consensus 375 ~~~~~g-~~~~~~G~l~la~~gil~IDEidk~~~~-------------~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ii 440 (748)
...+.+ ..+++ .--.|...|+|+||+|.+.|. +...|+.-|+ |.+..-.....||
T Consensus 747 GqSE~NVR~VFe--rAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFVi 815 (953)
T KOG0736|consen 747 GQSEENVREVFE--RARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFVI 815 (953)
T ss_pred cchHHHHHHHHH--HhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEEE
Confidence 111111 01111 012345689999999998763 2344554444 4444334578999
Q ss_pred eecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHH
Q 004502 441 AAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 441 aa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
+|+|... -|+++||+ |||=.+.+....+.+....+-+.+.+
T Consensus 816 GATNRPD-------------LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr 858 (953)
T KOG0736|consen 816 GATNRPD-------------LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR 858 (953)
T ss_pred ecCCCcc-------------ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH
Confidence 9999764 48999998 99999998666666665555555443
No 118
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.1e-09 Score=120.77 Aligned_cols=154 Identities=27% Similarity=0.354 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHH
Q 004502 271 PEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIM 350 (748)
Q Consensus 271 ~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~ 350 (748)
.+++.+|-++-++|.-|..+-..+ -| .+||+||||||||.||+++|
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKi-------------------------------Pk---GvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKI-------------------------------PK---GVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcC-------------------------------cC---ceEEECCCCCcHHHHHHHHh
Confidence 456667777777887776652211 12 59999999999999999999
Q ss_pred HhCCCcEEec-cCCC--CCcccceeeeecccccceeeccceEeec---cCceeeecCCCcCChhh---------------
Q 004502 351 NIAPLAISTT-GRGS--SGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMNDQD--------------- 409 (748)
Q Consensus 351 ~~~~~~~~~~-g~~~--~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~~~~--------------- 409 (748)
..++-+++.. |.-. ...|.-++-+++ .+..| ...|+||||||......
T Consensus 366 GEAgVPF~svSGSEFvE~~~g~~asrvr~-----------lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~t 434 (774)
T KOG0731|consen 366 GEAGVPFFSVSGSEFVEMFVGVGASRVRD-----------LFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQT 434 (774)
T ss_pred cccCCceeeechHHHHHHhcccchHHHHH-----------HHHHhhccCCeEEEecccccccccccccccCCCChHHHHH
Confidence 9999887543 2100 001111111111 11122 24699999999764322
Q ss_pred HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHH
Q 004502 410 RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRR 487 (748)
Q Consensus 410 ~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ 487 (748)
++.|+--|+ |.... ....++|++|... -|.++|+. |||-.+.+ |.|+.....
T Consensus 435 lnQll~emD---------gf~~~--~~vi~~a~tnr~d-------------~ld~allrpGRfdr~i~i-~~p~~~~r~- 488 (774)
T KOG0731|consen 435 LNQLLVEMD---------GFETS--KGVIVLAATNRPD-------------ILDPALLRPGRFDRQIQI-DLPDVKGRA- 488 (774)
T ss_pred HHHHHHHhc---------CCcCC--CcEEEEeccCCcc-------------ccCHHhcCCCccccceec-cCCchhhhH-
Confidence 233333333 22222 5688999999865 48899998 99999998 778766544
Q ss_pred HHHHHHHhhhc
Q 004502 488 ISDHVLRMHRY 498 (748)
Q Consensus 488 ia~~il~~~~~ 498 (748)
.|+..|..
T Consensus 489 ---~i~~~h~~ 496 (774)
T KOG0731|consen 489 ---SILKVHLR 496 (774)
T ss_pred ---HHHHHHhh
Confidence 45666654
No 119
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=1.5e-08 Score=117.29 Aligned_cols=140 Identities=20% Similarity=0.258 Sum_probs=84.7
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEeccCC--C--------
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG--S-------- 364 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~--~-------- 364 (748)
.+|+||+.+++.|.-++..|. .+ | +||+|+||+|||++++.+++.+.-.....+.. .
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-------l~-----hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-------LH-----HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CC-----eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 368899999998888887651 12 5 58999999999999999999875421100000 0
Q ss_pred --CCcccceeeeeccccc--ce--eeccceE--eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 365 --SGVGLTAAVTSDQETG--ER--RLEAGAM--VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 365 --~~~glt~~~~~~~~~g--~~--~~~~G~l--~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
...++.- +......+ +. .++.-.. ......|++|||+++|+...+++|+..||+- |..
T Consensus 84 ~g~~~D~ie-idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~~ 149 (647)
T PRK07994 84 QGRFVDLIE-IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEH 149 (647)
T ss_pred cCCCCCcee-ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------CCC
Confidence 0001100 00000001 00 0000000 1123459999999999999999999999962 223
Q ss_pred ee-EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 437 CS-VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 437 ~~-iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+. |++|+++. .|+++++||+ ..|.+
T Consensus 150 v~FIL~Tt~~~--------------kLl~TI~SRC-~~~~f 175 (647)
T PRK07994 150 VKFLLATTDPQ--------------KLPVTILSRC-LQFHL 175 (647)
T ss_pred eEEEEecCCcc--------------ccchHHHhhh-eEeeC
Confidence 33 34444443 4899999998 66666
No 120
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.95 E-value=2.7e-09 Score=100.27 Aligned_cols=143 Identities=23% Similarity=0.206 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCC---CcEEeccCCCCCcccceeeeec
Q 004502 300 GHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAP---LAISTTGRGSSGVGLTAAVTSD 376 (748)
Q Consensus 300 G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~---~~~~~~g~~~~~~glt~~~~~~ 376 (748)
|++.+...+...+.... + + +++++|+||+|||++++.+++.+. ..+............. ..
T Consensus 2 ~~~~~~~~i~~~~~~~~------~-~-----~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~----~~ 65 (151)
T cd00009 2 GQEEAIEALREALELPP------P-K-----NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV----VA 65 (151)
T ss_pred chHHHHHHHHHHHhCCC------C-C-----eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH----HH
Confidence 55666666666665420 0 2 899999999999999999998873 2222111100000000 00
Q ss_pred ccccc--eeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCC
Q 004502 377 QETGE--RRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSL 454 (748)
Q Consensus 377 ~~~g~--~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~ 454 (748)
...+. ...........+.++++|||++.+.+.....+++.++...... ..+.++.+|+++|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~------ 132 (151)
T cd00009 66 ELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL------ 132 (151)
T ss_pred HHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc------
Confidence 00000 0011122234467899999999998888888999888654322 33567899999998753
Q ss_pred CccccCCCChhhhccccEEEEe
Q 004502 455 TPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 455 ~~~~ni~l~~~LlsRFdli~~~ 476 (748)
..+++++.+||+..+.+
T Consensus 133 -----~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 133 -----GDLDRALYDRLDIRIVI 149 (151)
T ss_pred -----CCcChhHHhhhccEeec
Confidence 24788999999876665
No 121
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.95 E-value=1.6e-09 Score=121.51 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=95.8
Q ss_pred ccCcccEEEECCCCccHHHHHHHHHHhCCCc---EEe-ccCC---CCCcccceeeeecccccce-eeccceEeeccCcee
Q 004502 326 LRGDINMMMVGDPSVAKSQLLRAIMNIAPLA---IST-TGRG---SSGVGLTAAVTSDQETGER-RLEAGAMVLADRGVV 397 (748)
Q Consensus 326 ~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~-~g~~---~~~~glt~~~~~~~~~g~~-~~~~G~l~la~~gil 397 (748)
.+.++++|+.|+|||||-.++|++++.+... +.+ ++.. ..+..|.+++-.. .+|.+ ....|.+..|++|.+
T Consensus 333 ~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~Ga-fTga~~kG~~g~~~~A~gGtl 411 (606)
T COG3284 333 AATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGA-FTGARRKGYKGKLEQADGGTL 411 (606)
T ss_pred hhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccc-cccchhccccccceecCCCcc
Confidence 4556799999999999999999999877631 111 1110 1111222222111 23322 224688899999999
Q ss_pred eecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 398 CIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 398 ~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
|+|||..|+-..|..|+.++++++|+ .-|... .+.++.||+|++-.-. .+.++-.+...|+-|..-..+.
T Consensus 412 FldeIgd~p~~~Qs~LLrVl~e~~v~--p~g~~~-~~vdirvi~ath~dl~------~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 412 FLDEIGDMPLALQSRLLRVLQEGVVT--PLGGTR-IKVDIRVIAATHRDLA------QLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred HHHHhhhchHHHHHHHHHHHhhCcee--ccCCcc-eeEEEEEEeccCcCHH------HHHHcCCchHHHHHHhcCeeec
Confidence 99999999999999999999999976 335556 7889999999997621 1123335677777777554443
No 122
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.94 E-value=7.1e-10 Score=103.23 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=75.2
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeeccccc-ceeeccceEeec-cCceeeecCCCcCChhh
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETG-ERRLEAGAMVLA-DRGVVCIDEFDKMNDQD 409 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g-~~~~~~G~l~la-~~gil~IDEidk~~~~~ 409 (748)
|||+||||||||++++.+++.+...+....... +......+.... ...+.. .... ..+|++|||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~----~~~~~~~~~~~~i~~~~~~--~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE----LISSYAGDSEQKIRDFFKK--AKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH----HHTSSTTHHHHHHHHHHHH--HHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc----ccccccccccccccccccc--ccccccceeeeeccchhccccc
Confidence 699999999999999999999976553321111 000000000000 000000 0001 35899999999998876
Q ss_pred -----------HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhh-ccccEEEEe
Q 004502 410 -----------RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLL-SRFDLLFIV 476 (748)
Q Consensus 410 -----------~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Ll-sRFdli~~~ 476 (748)
...|...|+...- ...++.+|+|+|... .++++|+ +||+..+.+
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~~~----------~~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNPSS----------KNSRVIVIATTNSPD-------------KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTTTT----------TSSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEEE
T ss_pred ccccccccccccceeeeccccccc----------ccccceeEEeeCChh-------------hCCHhHHhCCCcEEEEc
Confidence 6777777775421 035689999999854 5999999 999998876
No 123
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.94 E-value=2.7e-08 Score=102.29 Aligned_cols=175 Identities=13% Similarity=0.169 Sum_probs=110.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC----cEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL----AISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~----~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~ 406 (748)
+++|+|+||||||+|++++++.+.. .++++... + ... .-.....++++|||++.++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~-----~---------~~~------~~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS-----P---------LLA------FDFDPEAELYAVDDVERLD 103 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH-----h---------HHH------HhhcccCCEEEEeChhhcC
Confidence 7999999999999999999986521 12221100 0 000 0112346799999999999
Q ss_pred hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc--cEEEEecCCCChhH
Q 004502 407 DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF--DLLFIVLDQMDPDI 484 (748)
Q Consensus 407 ~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF--dli~~~~d~~~~~~ 484 (748)
...+..|+.+++.-. . .....++.+++.....+ .+.+.|.||| .+.+.+ ++++.+.
T Consensus 104 ~~~~~~L~~~~~~~~----~-------~~~~~vl~~~~~~~~~~----------~l~~~L~sr~~~~~~i~l-~pl~~~~ 161 (227)
T PRK08903 104 DAQQIALFNLFNRVR----A-------HGQGALLVAGPAAPLAL----------PLREDLRTRLGWGLVYEL-KPLSDAD 161 (227)
T ss_pred chHHHHHHHHHHHHH----H-------cCCcEEEEeCCCCHHhC----------CCCHHHHHHHhcCeEEEe-cCCCHHH
Confidence 988889988886421 0 11223444444322111 3668899999 456666 4455443
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhc
Q 004502 485 DRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHR 564 (748)
Q Consensus 485 d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~ 564 (748)
+..+.. ++. ++
T Consensus 162 ~~~~l~-----------------------------------------------------------------~~~---~~- 172 (227)
T PRK08903 162 KIAALK-----------------------------------------------------------------AAA---AE- 172 (227)
T ss_pred HHHHHH-----------------------------------------------------------------HHH---HH-
Confidence 322221 111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 565 IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 565 ~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
....+++++.+.|.+. ++-++|+|..+++.-.+.|.... ..||...|.+++.
T Consensus 173 ~~v~l~~~al~~L~~~----------------~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 173 RGLQLADEVPDYLLTH----------------FRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred cCCCCCHHHHHHHHHh----------------ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 2346888998888762 56789999999988777776555 5899888888763
No 124
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=1.2e-08 Score=116.53 Aligned_cols=143 Identities=16% Similarity=0.226 Sum_probs=84.4
Q ss_pred ccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE----EeccCC------
Q 004502 294 LAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGRG------ 363 (748)
Q Consensus 294 i~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~~------ 363 (748)
-+.+++||+.+++.+.-++..| ...| .+||.||||+|||++|+.+++.+.-.- ..+|.-
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~------rl~h-----A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNN------KLTH-----AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC------CCCc-----eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3346889999998888777655 1112 489999999999999999998874210 011100
Q ss_pred --CCCcccceeeeeccccc--c--eeec-cc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecc
Q 004502 364 --SSGVGLTAAVTSDQETG--E--RRLE-AG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA 435 (748)
Q Consensus 364 --~~~~glt~~~~~~~~~g--~--~~~~-~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~ 435 (748)
....++.. +......| + .... .. .-..++.+|++|||++.|+.+.+++|+..||+- |.
T Consensus 83 ~~~~h~Diie-Idaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~ 148 (605)
T PRK05896 83 NTNQSVDIVE-LDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-------------PK 148 (605)
T ss_pred HcCCCCceEE-eccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-------------CC
Confidence 00001000 00000000 0 0000 00 012346789999999999999999999999953 22
Q ss_pred ceeEe-eecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 436 RCSVV-AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 436 ~~~ii-aa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+.+| +|.++. .+++++.||+. ++.+
T Consensus 149 ~tvfIL~Tt~~~--------------KLl~TI~SRcq-~ieF 175 (605)
T PRK05896 149 HVVFIFATTEFQ--------------KIPLTIISRCQ-RYNF 175 (605)
T ss_pred cEEEEEECCChH--------------hhhHHHHhhhh-hccc
Confidence 33344 444332 48899999984 3444
No 125
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.94 E-value=8.7e-09 Score=127.05 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=33.8
Q ss_pred cccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 597 LPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 597 ~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
...|.+.|.+|+.-|--.|.-+.+..|+.+|+..|+.=.
T Consensus 1839 ~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1839 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 456889999999999999999999999999999998743
No 126
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=121.00 Aligned_cols=135 Identities=22% Similarity=0.344 Sum_probs=101.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEecc--CCCCCcccceeeeecccccceeeccceE--eeccCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTG--RGSSGVGLTAAVTSDQETGERRLEAGAM--VLADRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g--~~~~~~glt~~~~~~~~~g~~~~~~G~l--~la~~gil~IDEidk~~ 406 (748)
++||.|.||+|||.|..++|+..+....-.. ..+.-.+|.++......+|++.+....+ .+.+||.+++||++..+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaS 1624 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLAS 1624 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhH
Confidence 6999999999999999999999887432211 1112234444433333567766554443 34489999999999999
Q ss_pred hhhHHHHHHHHhh-ceEEeeccceeEEeccceeEeeecCCCC---CccCCCCCccccCCCChhhhccccEEEE
Q 004502 407 DQDRVAIHEVMEQ-QTVTIAKAGIHASLNARCSVVAAANPIY---GTYDRSLTPTKNIGLPDSLLSRFDLLFI 475 (748)
Q Consensus 407 ~~~~~~L~e~me~-~~i~i~k~g~~~~l~~~~~iiaa~Np~~---g~~~~~~~~~~ni~l~~~LlsRFdli~~ 475 (748)
.+++..|...++. +...|..-.++.....++.|+||-||.. |+- .||.++++||-.+++
T Consensus 1625 QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRK----------gLPkSF~nRFsvV~~ 1687 (4600)
T COG5271 1625 QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRK----------GLPKSFLNRFSVVKM 1687 (4600)
T ss_pred HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcc----------cCCHHHhhhhheEEe
Confidence 9999999999997 4566666666777788999999999985 332 699999999977766
No 127
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1e-07 Score=110.27 Aligned_cols=139 Identities=20% Similarity=0.246 Sum_probs=82.5
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEE--eccCCC---------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAIS--TTGRGS--------- 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~--~~g~~~--------- 364 (748)
+|+||+.+++.|.-++..+. .+ | +||+|++|+|||++++.+++.+.-.-. ..|...
T Consensus 17 dviGQe~vv~~L~~~l~~~r-------l~-----ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR-------LH-----HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CC-----eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 57899999998888887661 12 5 499999999999999999988742100 000000
Q ss_pred ------CCcccceeeeecccccc-e---eecc-c-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEE
Q 004502 365 ------SGVGLTAAVTSDQETGE-R---RLEA-G-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 365 ------~~~glt~~~~~~~~~g~-~---~~~~-G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
...++.- +......|- . .++. . .-..+...|++|||+++|+....++|+..||+-
T Consensus 85 ~~i~~g~h~D~~e-ldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP------------ 151 (618)
T PRK14951 85 RDIDSGRFVDYTE-LDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP------------ 151 (618)
T ss_pred HHHHcCCCCceee-cCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC------------
Confidence 0001100 000000010 0 0000 0 001123469999999999999999999999852
Q ss_pred eccceeE-eeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 433 LNARCSV-VAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 433 l~~~~~i-iaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
|..+.+ ++|++|. .++.+++||+ .+|.+
T Consensus 152 -P~~~~fIL~Ttd~~--------------kil~TIlSRc-~~~~f 180 (618)
T PRK14951 152 -PEYLKFVLATTDPQ--------------KVPVTVLSRC-LQFNL 180 (618)
T ss_pred -CCCeEEEEEECCch--------------hhhHHHHHhc-eeeec
Confidence 233344 4444443 4788899999 66666
No 128
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.93 E-value=3e-08 Score=107.23 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=78.3
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE----EeccCCCCCccccee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGRGSSGVGLTAA 372 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~~~~~~glt~~ 372 (748)
+++|++.++..+.-.+-.+. .+ |++|+|+||+|||++++++++.+.... +..-..+...+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~-------~~-----~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-- 83 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN-------MP-----HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGID-- 83 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC-------CC-----eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchH--
Confidence 36799998888777765441 12 799999999999999999998753211 0000000000000
Q ss_pred eeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCC
Q 004502 373 VTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDR 452 (748)
Q Consensus 373 ~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~ 452 (748)
...+.. .++ .....+..+...+++|||++.+..+.+..|+..|+.. +..+.+|.++|...
T Consensus 84 ~~~~~i-~~~-~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~----- 143 (319)
T PRK00440 84 VIRNKI-KEF-ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-------------SQNTRFILSCNYSS----- 143 (319)
T ss_pred HHHHHH-HHH-HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-------------CCCCeEEEEeCCcc-----
Confidence 000000 000 0001111134569999999999998889999988742 12344555665432
Q ss_pred CCCccccCCCChhhhccccE
Q 004502 453 SLTPTKNIGLPDSLLSRFDL 472 (748)
Q Consensus 453 ~~~~~~ni~l~~~LlsRFdl 472 (748)
.+.+++.+|+..
T Consensus 144 --------~l~~~l~sr~~~ 155 (319)
T PRK00440 144 --------KIIDPIQSRCAV 155 (319)
T ss_pred --------ccchhHHHHhhe
Confidence 366788888854
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=2.3e-08 Score=115.14 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=85.5
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEE----eccC------C
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAIS----TTGR------G 363 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~----~~g~------~ 363 (748)
+.+|+||+.+++.|.-++..|. .. | +||+||+|||||++++.+++.+.-... -+|. .
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-------~~-----ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-------IN-----HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-------CC-----eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 3468899999999888887651 12 6 589999999999999999987652100 0000 0
Q ss_pred ----CCCcccceeeeecc--ccccee---e--ccc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeE
Q 004502 364 ----SSGVGLTAAVTSDQ--ETGERR---L--EAG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHA 431 (748)
Q Consensus 364 ----~~~~glt~~~~~~~--~~g~~~---~--~~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~ 431 (748)
....++. .-+. ..|--. + ..- .-..++..|++|||++.|+.+.+++|+..||+-
T Consensus 80 ~~~~~~~~dvi---eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp----------- 145 (584)
T PRK14952 80 APNGPGSIDVV---ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP----------- 145 (584)
T ss_pred hcccCCCceEE---EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-----------
Confidence 0000110 0010 001000 0 000 002346679999999999999999999999952
Q ss_pred Eecccee-EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 432 SLNARCS-VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 432 ~l~~~~~-iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
|..+. |++|+++. .+++++.||. .+|.+
T Consensus 146 --p~~~~fIL~tte~~--------------kll~TI~SRc-~~~~F 174 (584)
T PRK14952 146 --PEHLIFIFATTEPE--------------KVLPTIRSRT-HHYPF 174 (584)
T ss_pred --CCCeEEEEEeCChH--------------hhHHHHHHhc-eEEEe
Confidence 22333 44454442 5899999997 55555
No 130
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.91 E-value=1e-08 Score=112.86 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=96.2
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc-----E--EeccCCCCCccc
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA-----I--STTGRGSSGVGL 369 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~-----~--~~~g~~~~~~gl 369 (748)
++++.+.....++.+|..+ + |++|+|+||||||++|+.++..+... + .+.....+..++
T Consensus 176 d~~i~e~~le~l~~~L~~~---------~-----~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK---------K-----NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred cccCCHHHHHHHHHHHhcC---------C-----CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHH
Confidence 4566666666666666654 3 89999999999999999999877431 1 011111111111
Q ss_pred ceeeeecccccceeeccceE----eec-----cCceeeecCCCcCChh-hHHHHHHHHhhc------eEEe--ec-ccee
Q 004502 370 TAAVTSDQETGERRLEAGAM----VLA-----DRGVVCIDEFDKMNDQ-DRVAIHEVMEQQ------TVTI--AK-AGIH 430 (748)
Q Consensus 370 t~~~~~~~~~g~~~~~~G~l----~la-----~~gil~IDEidk~~~~-~~~~L~e~me~~------~i~i--~k-~g~~ 430 (748)
..... +....+...+|.+ ..| .+.+++|||+|+.+.+ ....++.+||.+ .+.+ .. .+..
T Consensus 242 I~G~r--P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 242 IQGYR--PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred hcccC--CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 11110 1112234445543 111 3569999999999965 467788888854 1222 11 1234
Q ss_pred EEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEec
Q 004502 431 ASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVL 477 (748)
Q Consensus 431 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~ 477 (748)
..+|.++.||||||..... +. .++.||.+||.++-+..
T Consensus 320 f~iP~Nl~IIgTMNt~Drs------~~---~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS------LA---VVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccc------hh---hccHHHHhhhheEEecC
Confidence 6789999999999997421 11 48999999997765543
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=3.5e-08 Score=112.06 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=84.3
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccE-EEECCCCccHHHHHHHHHHhCCCcE----EeccCC----CCC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINM-MMVGDPSVAKSQLLRAIMNIAPLAI----STTGRG----SSG 366 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~i-LL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~~----~~~ 366 (748)
-+++||+.+++.+.-++-.|. .+ |+ ||+||||+|||++++.+++.+...- ..+|.- ...
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-------l~-----hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-------LA-----HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-------CC-----eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 358999999999988887661 12 55 8999999999999999998763210 000000 000
Q ss_pred cccceeee-eccc--cc--c--eeecc-c-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 367 VGLTAAVT-SDQE--TG--E--RRLEA-G-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 367 ~glt~~~~-~~~~--~g--~--~~~~~-G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
.+....+. .+.. .| + ...+. . .-..+...|++|||+++|+.+.+++|+..||+- |..+
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t 148 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYV 148 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CCce
Confidence 00000000 0000 00 0 00000 0 012245679999999999999999999999952 2334
Q ss_pred eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+|.++|... .+++++.||. .+|.+
T Consensus 149 ~FIL~ttd~~-------------kL~~tI~SRc-~~~~F 173 (535)
T PRK08451 149 KFILATTDPL-------------KLPATILSRT-QHFRF 173 (535)
T ss_pred EEEEEECChh-------------hCchHHHhhc-eeEEc
Confidence 4444444322 5899999997 45555
No 132
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-08 Score=115.95 Aligned_cols=132 Identities=27% Similarity=0.320 Sum_probs=84.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe-ccCCC--CCcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST-TGRGS--SGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~-~g~~~--~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~ 407 (748)
++||+||||||||.|+|+++..++.+++. +|... --+|.-++-++|.... +...| ..|+||||+|....
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~q-------Akk~a-P~IIFIDEiDAvGr 256 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQ-------AKKNA-PCIIFIDEIDAVGR 256 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHH-------hhccC-CCeEEEehhhhccc
Confidence 69999999999999999999999987644 33111 1123334434332111 11111 36999999998754
Q ss_pred h--------------hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--ccc
Q 004502 408 Q--------------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFD 471 (748)
Q Consensus 408 ~--------------~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFd 471 (748)
. .++.|+.-|+ |-. -+..+.++||+|... -+.++|++ |||
T Consensus 257 ~Rg~g~GggnderEQTLNQlLvEmD---------GF~--~~~gviviaaTNRpd-------------VlD~ALlRpgRFD 312 (596)
T COG0465 257 QRGAGLGGGNDEREQTLNQLLVEMD---------GFG--GNEGVIVIAATNRPD-------------VLDPALLRPGRFD 312 (596)
T ss_pred ccCCCCCCCchHHHHHHHHHHhhhc---------cCC--CCCceEEEecCCCcc-------------cchHhhcCCCCcc
Confidence 3 3344444444 211 234578899999764 37899998 999
Q ss_pred EEEEecCCCChhHhHHHHHHHHHhhhcc
Q 004502 472 LLFIVLDQMDPDIDRRISDHVLRMHRYR 499 (748)
Q Consensus 472 li~~~~d~~~~~~d~~ia~~il~~~~~~ 499 (748)
-.+.+ +.||-... +.|+..|...
T Consensus 313 RqI~V-~~PDi~gR----e~IlkvH~~~ 335 (596)
T COG0465 313 RQILV-ELPDIKGR----EQILKVHAKN 335 (596)
T ss_pred eeeec-CCcchhhH----HHHHHHHhhc
Confidence 98888 77765443 4456666543
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.90 E-value=1.1e-08 Score=122.97 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=93.7
Q ss_pred cccChHHHHHHHHHHHhCCccc---ccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEK---NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAV 373 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~---~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~ 373 (748)
+|.|++.+|+.+.-.+.-.... ...-| .+..-++||+||||||||++++++++.+...+.... ...+....
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g--~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~----~~~l~~~~ 527 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMG--IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR----GPEILSKW 527 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe----hHHHhhcc
Confidence 4678999988776655321100 00011 111226999999999999999999998876543221 00111100
Q ss_pred eecccccceeeccceEe---eccCceeeecCCCcCCh------------hhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 374 TSDQETGERRLEAGAMV---LADRGVVCIDEFDKMND------------QDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 374 ~~~~~~g~~~~~~G~l~---la~~gil~IDEidk~~~------------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
+. ..+..+. ..+. .+..+|+||||+|.+.+ ...+.|+..|+. . .-+.++.
T Consensus 528 vG---ese~~i~-~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~v~ 592 (733)
T TIGR01243 528 VG---ESEKAIR-EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG---------I--QELSNVV 592 (733)
T ss_pred cC---cHHHHHH-HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc---------c--cCCCCEE
Confidence 00 0000010 0111 12357999999998732 223445555542 1 1134688
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHHHH
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRISD 490 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ia~ 490 (748)
||||+|... .|++++++ |||.++.+ +.|+.+....|..
T Consensus 593 vI~aTn~~~-------------~ld~allRpgRfd~~i~v-~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 593 VIAATNRPD-------------ILDPALLRPGRFDRLILV-PPPDEEARKEIFK 632 (733)
T ss_pred EEEeCCChh-------------hCCHhhcCCCccceEEEe-CCcCHHHHHHHHH
Confidence 999999865 59999996 99999888 7788776666543
No 134
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.89 E-value=6.3e-09 Score=117.50 Aligned_cols=134 Identities=19% Similarity=0.252 Sum_probs=80.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCC------CCCcccceeeeecccccce--eec---cceEeec---cCce
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG------SSGVGLTAAVTSDQETGER--RLE---AGAMVLA---DRGV 396 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~------~~~~glt~~~~~~~~~g~~--~~~---~G~l~la---~~gi 396 (748)
++||+||||||||++++++++.+...++..... .....+... ..|+. .+. ..+...+ ...|
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~k-----yvGete~~ir~iF~~Ar~~a~~g~p~I 292 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNK-----YVGETERQIRLIFQRAREKASDGRPVI 292 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccc-----ccchHHHHHHHHHHHHHHHhhcCCCce
Confidence 699999999999999999999886543220000 000001000 01110 000 0000111 2469
Q ss_pred eeecCCCcCChh------------hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCCh
Q 004502 397 VCIDEFDKMNDQ------------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPD 464 (748)
Q Consensus 397 l~IDEidk~~~~------------~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~ 464 (748)
+||||+|.+-.. ....|+..|+. ... ..+..||+|+|... .|++
T Consensus 293 IfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~~--~~~ViVI~ATN~~d-------------~LDp 348 (512)
T TIGR03689 293 VFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VES--LDNVIVIGASNRED-------------MIDP 348 (512)
T ss_pred EEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc---------ccc--CCceEEEeccCChh-------------hCCH
Confidence 999999976321 12344444442 111 13678999999865 5999
Q ss_pred hhhc--cccEEEEecCCCChhHhHHHHHHHHH
Q 004502 465 SLLS--RFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 465 ~Lls--RFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
+|++ |||..+.+ +.|+.+....|..+.+.
T Consensus 349 ALlRpGRfD~~I~~-~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 349 AILRPGRLDVKIRI-ERPDAEAAADIFSKYLT 379 (512)
T ss_pred hhcCccccceEEEe-CCCCHHHHHHHHHHHhh
Confidence 9998 99999888 77888877777665543
No 135
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=5.1e-08 Score=111.03 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=84.0
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCcccE-EEECCCCccHHHHHHHHHHhCCCc--E-EeccCC-------
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINM-MMVGDPSVAKSQLLRAIMNIAPLA--I-STTGRG------- 363 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~i-LL~G~pGtGKS~l~r~i~~~~~~~--~-~~~g~~------- 363 (748)
..+|+||+.++..|.-++..+. .. |. ||+||||||||++++++++.+.-. . ..+|.-
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-------l~-----ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-------LG-----HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-------CC-----eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 3468999999888887777651 11 55 999999999999999999877420 0 001100
Q ss_pred -CCCcccceeeeeccccc-----ceeeccceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 364 -SSGVGLTAAVTSDQETG-----ERRLEAGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 364 -~~~~glt~~~~~~~~~g-----~~~~~~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
.+..++.. +......+ +..-..... ..+...|++|||++.++.+.+++|+..|++. +..
T Consensus 81 ~~~h~dv~e-l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-------------~~~ 146 (504)
T PRK14963 81 RGAHPDVLE-IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-------------PEH 146 (504)
T ss_pred cCCCCceEE-ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-------------CCC
Confidence 00000000 00000000 000001111 2345679999999999999999999999853 123
Q ss_pred eeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 437 CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 437 ~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+.+|.++|... .+++++.+|+. +|.+
T Consensus 147 t~~Il~t~~~~-------------kl~~~I~SRc~-~~~f 172 (504)
T PRK14963 147 VIFILATTEPE-------------KMPPTILSRTQ-HFRF 172 (504)
T ss_pred EEEEEEcCChh-------------hCChHHhcceE-EEEe
Confidence 44444444322 48899999984 4555
No 136
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=2.4e-07 Score=107.74 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=83.8
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEe----ccCC--------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAIST----TGRG-------- 363 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~----~g~~-------- 363 (748)
+|+|++.+++.|.-++..|. .+ | +||+||||+|||++++.+++.+...-.. +|.-
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-------~~-----hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-------VA-----HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-------CC-----eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 68899999999988887651 11 4 5999999999999999999887531100 0000
Q ss_pred CCCcccceeeeeccccc--ce-ee-c-cce-EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 364 SSGVGLTAAVTSDQETG--ER-RL-E-AGA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 364 ~~~~glt~~~~~~~~~g--~~-~~-~-~G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
.+..++.- +......| +. .+ + ... -..++..|++|||+++|+....++|+..||+- +..+
T Consensus 85 g~~~d~~e-id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~ 150 (576)
T PRK14965 85 GRSVDVFE-IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHV 150 (576)
T ss_pred CCCCCeee-eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCe
Confidence 00000000 00000000 00 00 0 000 12345679999999999999999999999952 2344
Q ss_pred eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+|.++|... .|+++++||+ .+|.+
T Consensus 151 ~fIl~t~~~~-------------kl~~tI~SRc-~~~~f 175 (576)
T PRK14965 151 KFIFATTEPH-------------KVPITILSRC-QRFDF 175 (576)
T ss_pred EEEEEeCChh-------------hhhHHHHHhh-hhhhc
Confidence 4444443222 5899999998 33443
No 137
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.88 E-value=7.1e-08 Score=105.19 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=65.1
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc------EEeccCCCCCccc
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA------ISTTGRGSSGVGL 369 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~------~~~~g~~~~~~gl 369 (748)
.+++|++.++..+.-++-.+. .+ |+||+||||||||++++++++.+... ++.+........
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~-------~~-----~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~- 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN-------LP-----HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG- 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC-------Cc-----eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc-
Confidence 346789998888766665431 12 89999999999999999999876421 222110000000
Q ss_pred ceeeeeccc------c----c---ceee------ccceE-eeccCceeeecCCCcCChhhHHHHHHHHhhc
Q 004502 370 TAAVTSDQE------T----G---ERRL------EAGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQ 420 (748)
Q Consensus 370 t~~~~~~~~------~----g---~~~~------~~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~ 420 (748)
......++. . + .-.+ ..+.. ..++.++++|||++.++++.+..|+..|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence 000000000 0 0 0000 00111 1245679999999999999899999999853
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=9.9e-08 Score=114.07 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=83.5
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcE----EeccC---------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAI----STTGR--------- 362 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~--------- 362 (748)
+|+||+.+++.|.-++-.+. .+ | +||.|++|+|||++++.+++.+.-.. ..+|.
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-------i~-----Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-------IN-----HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-------CC-----ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 57899999999888887651 12 6 79999999999999999998874210 00110
Q ss_pred -CCCCcccceeeeeccccc--c-eeec--cc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecc
Q 004502 363 -GSSGVGLTAAVTSDQETG--E-RRLE--AG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA 435 (748)
Q Consensus 363 -~~~~~glt~~~~~~~~~g--~-~~~~--~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~ 435 (748)
.....++.. +......| + ..+. .. .-......|++|||+++|+...+++|+..||+- +.
T Consensus 84 g~~~~~dv~e-idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P~ 149 (824)
T PRK07764 84 GGPGSLDVTE-IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------PE 149 (824)
T ss_pred CCCCCCcEEE-ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-------------CC
Confidence 000111110 00000000 0 0000 00 012245579999999999999999999999952 22
Q ss_pred ceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 436 RCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 436 ~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+.+|.++|... .|.++|.||+ .+|.+
T Consensus 150 ~~~fIl~tt~~~-------------kLl~TIrSRc-~~v~F 176 (824)
T PRK07764 150 HLKFIFATTEPD-------------KVIGTIRSRT-HHYPF 176 (824)
T ss_pred CeEEEEEeCChh-------------hhhHHHHhhe-eEEEe
Confidence 344444443322 3788999998 44444
No 139
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=4.9e-08 Score=112.14 Aligned_cols=137 Identities=19% Similarity=0.255 Sum_probs=80.9
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC--C----------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG--S---------- 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~--~---------- 364 (748)
+|+||+.+++.|.-++..+. -.+ ++||.||||+|||++++.+++.+.-.....+.. .
T Consensus 17 dIiGQe~v~~~L~~ai~~~r------i~h-----a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR------VAP-----AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC------CCc-----eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence 57899999888887776551 013 788999999999999999999875311000000 0
Q ss_pred CCcccceeeeeccccc--c-eeec--cce-EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 365 SGVGLTAAVTSDQETG--E-RRLE--AGA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 365 ~~~glt~~~~~~~~~g--~-~~~~--~G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
...++. .+......+ . ..+. .+. -..+...|++|||+++|+.+.+++|+..||+- +..+.
T Consensus 86 ~hpDv~-eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~i 151 (624)
T PRK14959 86 MHVDVV-EIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVT 151 (624)
T ss_pred CCCceE-EEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEE
Confidence 000010 000000000 0 0000 000 02234579999999999999999999999852 12344
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhcccc
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
+|.++|... .++..|.||+-
T Consensus 152 fILaTt~~~-------------kll~TI~SRcq 171 (624)
T PRK14959 152 FVLATTEPH-------------KFPVTIVSRCQ 171 (624)
T ss_pred EEEecCChh-------------hhhHHHHhhhh
Confidence 444444322 47788999983
No 140
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.1e-08 Score=113.83 Aligned_cols=130 Identities=20% Similarity=0.227 Sum_probs=81.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEe---eccCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMV---LADRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~---la~~gil~IDEidk~~~ 407 (748)
.+||+||||||||+|+++++..+...+...... .++...+... +..+ ...+. .....|+||||+|.+-+
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk~vGes---ek~i-r~~F~~A~~~~p~iiFiDEiDs~~~ 349 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSKWVGES---EKNI-RELFEKARKLAPSIIFIDEIDSLAS 349 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhccccchH---HHHH-HHHHHHHHcCCCcEEEEEchhhhhc
Confidence 799999999999999999999877655332111 1111111000 0000 01111 22468999999998743
Q ss_pred -----------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEE
Q 004502 408 -----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLF 474 (748)
Q Consensus 408 -----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~ 474 (748)
...+.|+..|+... . ..++.||||+|... .++++++. |||-++
T Consensus 350 ~r~~~~~~~~~r~~~~lL~~~d~~e---------~--~~~v~vi~aTN~p~-------------~ld~a~lR~gRfd~~i 405 (494)
T COG0464 350 GRGPSEDGSGRRVVGQLLTELDGIE---------K--AEGVLVIAATNRPD-------------DLDPALLRPGRFDRLI 405 (494)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCCC---------c--cCceEEEecCCCcc-------------ccCHhhcccCccceEe
Confidence 23344455554211 1 12477999999976 59999999 999999
Q ss_pred EecCCCChhHhHHHHHHHH
Q 004502 475 IVLDQMDPDIDRRISDHVL 493 (748)
Q Consensus 475 ~~~d~~~~~~d~~ia~~il 493 (748)
.+ +.|+.+....+..+.+
T Consensus 406 ~v-~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 406 YV-PLPDLEERLEIFKIHL 423 (494)
T ss_pred ec-CCCCHHHHHHHHHHHh
Confidence 98 7777776666555433
No 141
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=8.6e-08 Score=110.89 Aligned_cols=141 Identities=20% Similarity=0.267 Sum_probs=84.0
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC----------CC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG----------SS 365 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~----------~~ 365 (748)
.+++||+.+++.+.-++..+. -.| .+||+||+|||||++++.+++.+.-.....|.. .+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~------~~h-----ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK------ISH-----AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC------CCe-----EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 368899999998888887651 112 378899999999999999998764311100100 00
Q ss_pred Ccccceeeeeccc--cc-----ceeeccc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 366 GVGLTAAVTSDQE--TG-----ERRLEAG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 366 ~~glt~~~~~~~~--~g-----~~~~~~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
+..... ...+.. .| +..-... .-..++..|++|||+++|+....++|+..||+- |..+
T Consensus 85 g~~~dv-~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~ 150 (559)
T PRK05563 85 GSLMDV-IEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHV 150 (559)
T ss_pred CCCCCe-EEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCe
Confidence 000000 000110 00 0000000 012345679999999999999999999999843 2333
Q ss_pred e-EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 S-VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 ~-iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
. |++|++|. .+++++.||+. .|.+
T Consensus 151 ifIlatt~~~--------------ki~~tI~SRc~-~~~f 175 (559)
T PRK05563 151 IFILATTEPH--------------KIPATILSRCQ-RFDF 175 (559)
T ss_pred EEEEEeCChh--------------hCcHHHHhHhe-EEec
Confidence 3 44554442 48899999994 3444
No 142
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.85 E-value=2e-08 Score=118.16 Aligned_cols=126 Identities=30% Similarity=0.306 Sum_probs=77.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec-cCC--CCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT-GRG--SSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-g~~--~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~ 407 (748)
++||+||||||||++++++++.++..++.. +.. ....|..+...++. +.. + ......|+||||+|.+..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~------f~~-a-~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM------FEQ-A-KKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHH------HHH-H-HhcCCcEEEehhHhhhhh
Confidence 599999999999999999999887765432 110 00011111100000 000 0 011346999999998732
Q ss_pred h--------------hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--ccc
Q 004502 408 Q--------------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFD 471 (748)
Q Consensus 408 ~--------------~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFd 471 (748)
. ..+.|+..|+.- .-+.++.+|||+|+.. .|++++++ |||
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfd 314 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRFD 314 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChh-------------hcCHHHhCCcccc
Confidence 1 233344444411 1134688999999875 58999996 999
Q ss_pred EEEEecCCCChhHhHHHH
Q 004502 472 LLFIVLDQMDPDIDRRIS 489 (748)
Q Consensus 472 li~~~~d~~~~~~d~~ia 489 (748)
-.+.+ +.|+.+....|.
T Consensus 315 r~i~v-~~Pd~~~R~~Il 331 (644)
T PRK10733 315 RQVVV-GLPDVRGREQIL 331 (644)
T ss_pred eEEEc-CCCCHHHHHHHH
Confidence 99887 677766555543
No 143
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=3.5e-08 Score=109.92 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHHHcccC----cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE-E----
Q 004502 288 DLLGNSLAP----SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI-S---- 358 (748)
Q Consensus 288 ~~l~~si~p----~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~-~---- 358 (748)
..|+....| +|+||+.+++.|.-++-.|.- .| .+||+||||+|||++++.+++.+.-.. .
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~------~h-----a~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~ 72 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRV------GH-----GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDAD 72 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCc------ce-----eEEEECCCCCCHHHHHHHHHHHhcCCCCcCccc
Confidence 344444444 688999999987777765510 01 499999999999999999998774310 0
Q ss_pred -------eccCC------CCCcccceeee-eccccc-cee---eccc--eEeeccCceeeecCCCcCChhhHHHHHHHHh
Q 004502 359 -------TTGRG------SSGVGLTAAVT-SDQETG-ERR---LEAG--AMVLADRGVVCIDEFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 359 -------~~g~~------~~~~glt~~~~-~~~~~g-~~~---~~~G--~l~la~~gil~IDEidk~~~~~~~~L~e~me 418 (748)
.+|.- .++..+..... .....+ +.. .+.- .-..++..|++|||+++|+...++.|+..||
T Consensus 73 ~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE 152 (397)
T PRK14955 73 YLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE 152 (397)
T ss_pred ccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh
Confidence 00000 00000000000 000000 000 0000 0134566799999999999999999999998
Q ss_pred h
Q 004502 419 Q 419 (748)
Q Consensus 419 ~ 419 (748)
+
T Consensus 153 e 153 (397)
T PRK14955 153 E 153 (397)
T ss_pred c
Confidence 4
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.83 E-value=2.4e-07 Score=95.58 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=83.0
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc-EEeccCC----CCCcccce
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA-ISTTGRG----SSGVGLTA 371 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~-~~~~g~~----~~~~glt~ 371 (748)
++.|++.+..++.=++.++. + . |.||+||||||||..++++++.+... ..-+|.. +..-|..
T Consensus 37 e~~gQe~vV~~L~~a~~~~~---l----p-----~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis- 103 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRI---L----P-----HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS- 103 (346)
T ss_pred hhcchHHHHHHHHHHHhhcC---C----c-----eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-
Confidence 57899999999998888641 1 2 89999999999999999998776541 1111111 1111111
Q ss_pred eeeeccccc-c--eeeccce--EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCC
Q 004502 372 AVTSDQETG-E--RRLEAGA--MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPI 446 (748)
Q Consensus 372 ~~~~~~~~g-~--~~~~~G~--l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~ 446 (748)
+.+....+ . .....+. -+...-.|++|||.|.|..+.+.+|...||.-. -.+.++.-+|..
T Consensus 104 -vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------------~~trFiLIcnyl 169 (346)
T KOG0989|consen 104 -VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------------RTTRFILICNYL 169 (346)
T ss_pred -chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------------cceEEEEEcCCh
Confidence 11111000 0 0000000 011122599999999999999999999999521 123344445655
Q ss_pred CCccCCCCCccccCCCChhhhccc
Q 004502 447 YGTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 447 ~g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
. .|+.++.||.
T Consensus 170 s-------------rii~pi~SRC 180 (346)
T KOG0989|consen 170 S-------------RIIRPLVSRC 180 (346)
T ss_pred h-------------hCChHHHhhH
Confidence 4 5999999998
No 145
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.1e-08 Score=104.12 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=50.9
Q ss_pred HHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcc---cEEEECCCCccHHHHHHHHHHhCCCc
Q 004502 289 LLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDI---NMMMVGDPSVAKSQLLRAIMNIAPLA 356 (748)
Q Consensus 289 ~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i---~iLL~G~pGtGKS~l~r~i~~~~~~~ 356 (748)
.+++.+-..|+||+.+|+|++++|-..+.+..-.+ .+|..+ |||++||+|+|||.++|.+|+++..+
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~-~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aP 77 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEE-ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAP 77 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCH-HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45666677899999999999999986654422111 122222 89999999999999999999998863
No 146
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=3.2e-07 Score=107.09 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=83.8
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEE-----eccCCCCCcccce
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIS-----TTGRGSSGVGLTA 371 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~-----~~g~~~~~~glt~ 371 (748)
+|+||+.+++.+.-++..|. ..| ..||+||||+|||++|+.+++.+.-... .+|.-..-.+...
T Consensus 19 dIiGQe~~v~~L~~aI~~~r------l~H-----AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~ 87 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK------ISH-----AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL 87 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC------CCe-----EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC
Confidence 58899999998888887651 112 3689999999999999999987653211 0000000000000
Q ss_pred eee-eccc--cc-----ceeeccceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee-Eee
Q 004502 372 AVT-SDQE--TG-----ERRLEAGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS-VVA 441 (748)
Q Consensus 372 ~~~-~~~~--~g-----~~~~~~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~-iia 441 (748)
.+. .+.. .| +..-..... ..++..|++|||++.|+...+++|+..||+- |..+. |++
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILa 154 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILA 154 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEE
Confidence 000 0000 00 000000111 1245679999999999999999999999953 23334 444
Q ss_pred ecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 442 AANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 442 a~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
|.+|. .|++++.||+. ++.+
T Consensus 155 Tte~~--------------KLl~TI~SRcq-~ieF 174 (725)
T PRK07133 155 TTEVH--------------KIPLTILSRVQ-RFNF 174 (725)
T ss_pred cCChh--------------hhhHHHHhhce-eEEc
Confidence 44442 48899999994 4544
No 147
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.4e-08 Score=112.32 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=103.8
Q ss_pred cccChHHHHHHHHHHHhCCcccc---cCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKN---LKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAV 373 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~---~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~ 373 (748)
+|-|.+.++..+-++++....+- ..-| ++..-.|||+||||||||.||+++|+.+...+... ++ ..|....
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lG--i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV-KG---PELlNkY 585 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALG--IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV-KG---PELLNKY 585 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhC--CCCCCceEEeCCCCccHHHHHHHHhhhccCceEee-cC---HHHHHHH
Confidence 35678999999988887653221 0112 22334799999999999999999999886543211 11 1121111
Q ss_pred eecccccceeeccceEee---ccCceeeecCCCcCCh-----------hhHHHHHHHHhhceEEeeccceeEEeccceeE
Q 004502 374 TSDQETGERRLEAGAMVL---ADRGVVCIDEFDKMND-----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSV 439 (748)
Q Consensus 374 ~~~~~~g~~~~~~G~l~l---a~~gil~IDEidk~~~-----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~i 439 (748)
+.. .+...+ ..+.. +...|+|+||+|.|-+ .+.+.|+.-|+ |.... ..+.|
T Consensus 586 VGE---SErAVR-~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~R--~gV~v 650 (802)
T KOG0733|consen 586 VGE---SERAVR-QVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELD---------GLEER--RGVYV 650 (802)
T ss_pred hhh---HHHHHH-HHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhc---------ccccc--cceEE
Confidence 110 011110 01111 1357999999998854 34566666665 22111 24789
Q ss_pred eeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHHhh
Q 004502 440 VAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRISDHVLRMH 496 (748)
Q Consensus 440 iaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ia~~il~~~ 496 (748)
|||+|... -+.+++|+ |||-+.++ +.|+.+....|.+.+.+.|
T Consensus 651 iaATNRPD-------------iIDpAiLRPGRlDk~LyV-~lPn~~eR~~ILK~~tkn~ 695 (802)
T KOG0733|consen 651 IAATNRPD-------------IIDPAILRPGRLDKLLYV-GLPNAEERVAILKTITKNT 695 (802)
T ss_pred EeecCCCc-------------ccchhhcCCCccCceeee-cCCCHHHHHHHHHHHhccC
Confidence 99999764 48999998 99998888 7888887777776666643
No 148
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.3e-07 Score=108.75 Aligned_cols=139 Identities=22% Similarity=0.261 Sum_probs=82.1
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEeccCC--C---------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG--S--------- 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~--~--------- 364 (748)
+|+||+.+++.+.-++..+. .+ | +||+||||+|||++++.+++.+.-.....+.. .
T Consensus 17 divGq~~v~~~L~~~i~~~~-------~~-----ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-------LH-----HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CC-----EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 57899999998888877651 12 5 58999999999999999998874311010000 0
Q ss_pred -CCcccceeeeeccccc----ceeec-c-ceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 365 -SGVGLTAAVTSDQETG----ERRLE-A-GAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 365 -~~~glt~~~~~~~~~g----~~~~~-~-G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
...++.. +......+ ...++ . ..-..+...|++|||+++|+.+..++|+..||+- |..+
T Consensus 85 ~~~~d~~e-i~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~ 150 (527)
T PRK14969 85 GRFVDLIE-VDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHV 150 (527)
T ss_pred CCCCceeE-eeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCE
Confidence 0001000 00000000 00000 0 0001234569999999999999999999999863 2233
Q ss_pred -eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 -SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 -~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.|++|.+|. .++++++||+ .+|.+
T Consensus 151 ~fIL~t~d~~--------------kil~tI~SRc-~~~~f 175 (527)
T PRK14969 151 KFILATTDPQ--------------KIPVTVLSRC-LQFNL 175 (527)
T ss_pred EEEEEeCChh--------------hCchhHHHHH-HHHhc
Confidence 344444443 3777899998 44444
No 149
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.80 E-value=8.5e-08 Score=105.43 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=83.1
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE----EeccC------CCC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGR------GSS 365 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~------~~~ 365 (748)
..++|++.++..+.-++..|.. .+ .+||+||||+|||++++.+++.+.... ..+|. ..+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~------~~-----~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRI------AH-----AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCC------Ce-----EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 4688999999988877766511 12 479999999999999999998864320 00000 000
Q ss_pred --Ccccceeeeeccccc--c--eee-ccceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 366 --GVGLTAAVTSDQETG--E--RRL-EAGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 366 --~~glt~~~~~~~~~g--~--~~~-~~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
...+. .+......+ . ... ..... ..++..|++|||++.++....+.|+..||+. +..+
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~ 148 (355)
T TIGR02397 83 GSSLDVI-EIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHV 148 (355)
T ss_pred CCCCCEE-EeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------ccce
Confidence 00000 000000000 0 000 01111 2345679999999999999999999998752 2345
Q ss_pred eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+|.++|... .+.+++.+|+. .+.+
T Consensus 149 ~lIl~~~~~~-------------~l~~~l~sr~~-~~~~ 173 (355)
T TIGR02397 149 VFILATTEPH-------------KIPATILSRCQ-RFDF 173 (355)
T ss_pred eEEEEeCCHH-------------HHHHHHHhhee-EEEc
Confidence 5555544321 37788999984 3443
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.1e-07 Score=109.55 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=83.8
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEE----eccC------CCCC
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIS----TTGR------GSSG 366 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~----~~g~------~~~~ 366 (748)
+|+||+.+++.+.-++..|. -.| .+||+||||+|||++++.+++.+..... .+|. ...+
T Consensus 17 diiGqe~iv~~L~~~i~~~~------i~h-----ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK------IAN-----AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDND 85 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC------CCe-----EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcC
Confidence 58899999998888887651 011 4899999999999999999998753210 0000 0000
Q ss_pred cccceeeeecc--ccc--ce-eec--cce-EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 367 VGLTAAVTSDQ--ETG--ER-RLE--AGA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 367 ~glt~~~~~~~--~~g--~~-~~~--~G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
..+..... +. ..+ +. .+. .-. -..++..|++|||+++|+...+++|+..||+- |..+.
T Consensus 86 ~~~dv~~i-dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~v 151 (563)
T PRK06647 86 NSLDVIEI-DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIV 151 (563)
T ss_pred CCCCeEEe-cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEE
Confidence 00000000 00 000 00 000 000 02345679999999999999999999999842 23444
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+|.+++... .++++|.+|+. .+.+
T Consensus 152 fI~~tte~~-------------kL~~tI~SRc~-~~~f 175 (563)
T PRK06647 152 FIFATTEVH-------------KLPATIKSRCQ-HFNF 175 (563)
T ss_pred EEEecCChH-------------HhHHHHHHhce-EEEe
Confidence 444443221 48899999995 3444
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.78 E-value=5.4e-08 Score=117.54 Aligned_cols=209 Identities=16% Similarity=0.161 Sum_probs=119.6
Q ss_pred ccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE---EeccCC--CCCcc
Q 004502 294 LAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI---STTGRG--SSGVG 368 (748)
Q Consensus 294 i~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~---~~~g~~--~~~~g 368 (748)
-...++|++..-+.++-.|..+ ..-|++|+||||+|||++++.+++.+.... +..+.. ....+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~ 252 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRR------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG 252 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcC------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehh
Confidence 3346889988666655555443 111899999999999999999998764320 000000 00000
Q ss_pred -cceeeeecccccceeeccc-eEe----eccCceeeecCCCcCCh-----hhH---HHHHHHHhhceEEeeccceeEEec
Q 004502 369 -LTAAVTSDQETGERRLEAG-AMV----LADRGVVCIDEFDKMND-----QDR---VAIHEVMEQQTVTIAKAGIHASLN 434 (748)
Q Consensus 369 -lt~~~~~~~~~g~~~~~~G-~l~----la~~gil~IDEidk~~~-----~~~---~~L~e~me~~~i~i~k~g~~~~l~ 434 (748)
+.+. ....|+|.-+-. .+. ...+.|+||||++.+.. ..+ +.|..+|+.|.
T Consensus 253 ~l~ag---~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~------------- 316 (852)
T TIGR03345 253 LLQAG---ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE------------- 316 (852)
T ss_pred hhhcc---cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC-------------
Confidence 1110 011222211000 000 01356999999999853 222 34666776553
Q ss_pred cceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 004502 435 ARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSR 514 (748)
Q Consensus 435 ~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~ 514 (748)
+.+|+|+++.. |+ ..+.+.++|.+||.. +.+ .+|+.+.-..|...+......
T Consensus 317 --l~~IgaTT~~e--~~------~~~~~d~AL~rRf~~-i~v-~eps~~~~~~iL~~~~~~~e~---------------- 368 (852)
T TIGR03345 317 --LRTIAATTWAE--YK------KYFEKDPALTRRFQV-VKV-EEPDEETAIRMLRGLAPVLEK---------------- 368 (852)
T ss_pred --eEEEEecCHHH--Hh------hhhhccHHHHHhCeE-EEe-CCCCHHHHHHHHHHHHHhhhh----------------
Confidence 56888988853 11 123689999999974 454 667766655554433321110
Q ss_pred CCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHhcc
Q 004502 515 YGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRI-QPELTDEASEQIATTYAELRNS 587 (748)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~-~P~ls~ea~~~i~~~y~~lR~~ 587 (748)
...-.++.+.+...+..+.+++ .-.+++.|.++|-+.....|..
T Consensus 369 -----------------------------~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~ 413 (852)
T TIGR03345 369 -----------------------------HHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALS 413 (852)
T ss_pred -----------------------------cCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHh
Confidence 0012356677777777777654 3578899999998877666543
No 152
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.7e-09 Score=105.38 Aligned_cols=149 Identities=22% Similarity=0.304 Sum_probs=88.6
Q ss_pred cccChHHHHHHHHHH---------HhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCc
Q 004502 297 SIYGHSWIKKAVILL---------MLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGV 367 (748)
Q Consensus 297 ~i~G~~~~K~aill~---------l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~ 367 (748)
+|-|.+.+|.||--+ ||.| +....| .|||+||||||||.||++++..+...++.. +..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtG------kR~Pwr---giLLyGPPGTGKSYLAKAVATEAnSTFFSv----SSS 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTG------KRKPWR---GILLYGPPGTGKSYLAKAVATEANSTFFSV----SSS 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcC------CCCcce---eEEEeCCCCCcHHHHHHHHHhhcCCceEEe----ehH
Confidence 467888887777554 3444 112345 499999999999999999999887433321 111
Q ss_pred ccceeeeecccccce-eeccceEeec---cCceeeecCCCcCChh--------hHHHHHHHHhhceEEeeccceeEEecc
Q 004502 368 GLTAAVTSDQETGER-RLEAGAMVLA---DRGVVCIDEFDKMNDQ--------DRVAIHEVMEQQTVTIAKAGIHASLNA 435 (748)
Q Consensus 368 glt~~~~~~~~~g~~-~~~~G~l~la---~~gil~IDEidk~~~~--------~~~~L~e~me~~~i~i~k~g~~~~l~~ 435 (748)
+|.... -|+. .+....+.+| ...|+||||||.+... .+..=-++|-|- .|. -.-+.
T Consensus 201 DLvSKW-----mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQM------qGV-G~d~~ 268 (439)
T KOG0739|consen 201 DLVSKW-----MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQM------QGV-GNDND 268 (439)
T ss_pred HHHHHH-----hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhh------hcc-ccCCC
Confidence 232111 1111 0111222333 3579999999977421 111112222110 011 12234
Q ss_pred ceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhH
Q 004502 436 RCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDI 484 (748)
Q Consensus 436 ~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~ 484 (748)
.+.|++|+|..+ .|..++.+||+-.+.+ +.|+...
T Consensus 269 gvLVLgATNiPw-------------~LDsAIRRRFekRIYI-PLPe~~A 303 (439)
T KOG0739|consen 269 GVLVLGATNIPW-------------VLDSAIRRRFEKRIYI-PLPEAHA 303 (439)
T ss_pred ceEEEecCCCch-------------hHHHHHHHHhhcceec-cCCcHHH
Confidence 688999999887 6999999999998888 5565543
No 153
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.4e-07 Score=107.10 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=82.1
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcE--E--eccC--------C
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAI--S--TTGR--------G 363 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~--~--~~g~--------~ 363 (748)
.+.||+.+.+.+.-++..+.- . | .||+||||+|||++++.+++.+.-.. . .+|. .
T Consensus 17 diiGq~~i~~~L~~~i~~~~i-------~-----hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~ 84 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRV-------S-----HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK 84 (486)
T ss_pred HccChHHHHHHHHHHHHcCCC-------C-----eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence 578999999988888876511 1 4 57899999999999999999875210 0 0000 0
Q ss_pred CCCcccceeeeecccccc---eeec--cceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-
Q 004502 364 SSGVGLTAAVTSDQETGE---RRLE--AGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR- 436 (748)
Q Consensus 364 ~~~~glt~~~~~~~~~g~---~~~~--~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~- 436 (748)
.+..++.. +......|- ..+. .... ..++..|++|||+++|+.+..++|+..|++- |..
T Consensus 85 g~~~d~~e-idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~ 150 (486)
T PRK14953 85 GSFPDLIE-IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRT 150 (486)
T ss_pred CCCCcEEE-EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCe
Confidence 00001100 000000010 0000 0011 2345679999999999999999999999853 222
Q ss_pred eeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 437 CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 437 ~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+.|+++.++. .+++++.+|+. ++.+
T Consensus 151 v~Il~tt~~~--------------kl~~tI~SRc~-~i~f 175 (486)
T PRK14953 151 IFILCTTEYD--------------KIPPTILSRCQ-RFIF 175 (486)
T ss_pred EEEEEECCHH--------------HHHHHHHHhce-EEEc
Confidence 3444544432 37889999984 3444
No 154
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.77 E-value=5.3e-08 Score=115.53 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=111.7
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCcccceee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGVGLTAAV 373 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~glt~~~ 373 (748)
.++|.+..-..++-.|... ..-|+||+||||||||.+++.++...-.. ....+...-...+...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll 254 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh
Confidence 3778777555555555432 11289999999999999999998753110 00000000000000000
Q ss_pred eecccccceeecc----ceEeeccCceeeecCCCcCC---------hhhHHHHHHHHhhceEEeeccceeEEeccceeEe
Q 004502 374 TSDQETGERRLEA----GAMVLADRGVVCIDEFDKMN---------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVV 440 (748)
Q Consensus 374 ~~~~~~g~~~~~~----G~l~la~~gil~IDEidk~~---------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ii 440 (748)
......|+|.-.- ..+..+.++|+||||++.+- .+..+.|..+++.+ +..+|
T Consensus 255 aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g---------------~i~vI 319 (758)
T PRK11034 255 AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------------KIRVI 319 (758)
T ss_pred cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------------CeEEE
Confidence 0001122221110 11112356899999999761 12233455555533 46789
Q ss_pred eecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCc
Q 004502 441 AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDE 520 (748)
Q Consensus 441 aa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (748)
+|+|+.. | ...+..+++|.+||+. +.+ +.|+.+.-..|...+......
T Consensus 320 gATt~~E--~------~~~~~~D~AL~rRFq~-I~v-~ePs~~~~~~IL~~~~~~ye~---------------------- 367 (758)
T PRK11034 320 GSTTYQE--F------SNIFEKDRALARRFQK-IDI-TEPSIEETVQIINGLKPKYEA---------------------- 367 (758)
T ss_pred ecCChHH--H------HHHhhccHHHHhhCcE-EEe-CCCCHHHHHHHHHHHHHHhhh----------------------
Confidence 9999853 1 0113689999999984 444 677777665555544332110
Q ss_pred cccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHh
Q 004502 521 VDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQ-PELTDEASEQIATTYAELR 585 (748)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~-P~ls~ea~~~i~~~y~~lR 585 (748)
...-.++.+.++.-+.++.+++. -.+++.|.+.|.+.....|
T Consensus 368 -----------------------~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~ 410 (758)
T PRK11034 368 -----------------------HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARAR 410 (758)
T ss_pred -----------------------ccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhc
Confidence 01223555666665555555443 2577888888887766544
No 155
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.8e-08 Score=105.16 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=68.7
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcEEeccC-CCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC--
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR-GSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN-- 406 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~-~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~-- 406 (748)
.||||+||+|+|||.|++.+|+++..++.+++. .-+.+|..+.-+-.-...-..--.+-+..|..||+||||+||+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 399999999999999999999999998877653 23344443321100000000001244556789999999999986
Q ss_pred ------------hhhHHHHHHHHhhceEEeeccce
Q 004502 407 ------------DQDRVAIHEVMEQQTVTIAKAGI 429 (748)
Q Consensus 407 ------------~~~~~~L~e~me~~~i~i~k~g~ 429 (748)
+.+|.+|+..+|--.+.+...|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~ 341 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGS 341 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCC
Confidence 35789999999987777754444
No 156
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=3.6e-07 Score=103.16 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=83.1
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCC-----------
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSS----------- 365 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~----------- 365 (748)
+|+||+.++..+.-++..|.- .| .+||+||||+|||++++.+++.+.......+....
T Consensus 18 diiGq~~~v~~L~~~i~~~~i------~h-----a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRA------AH-----AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCC------ce-----EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 588999999887777765510 02 48999999999999999999876431100000000
Q ss_pred --Ccccceeeeeccccc-cee---ec-cce-EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccce
Q 004502 366 --GVGLTAAVTSDQETG-ERR---LE-AGA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437 (748)
Q Consensus 366 --~~glt~~~~~~~~~g-~~~---~~-~G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~ 437 (748)
...+. .+......| +.. .+ ... -..++..|++|||+++|+.+.+++|+..||+- +..+
T Consensus 87 ~~~~d~~-~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~~ 152 (451)
T PRK06305 87 GTSLDVL-EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQHV 152 (451)
T ss_pred CCCCceE-EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCCc
Confidence 00000 000000000 000 00 000 02356679999999999999999999999852 2234
Q ss_pred eEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.+|.++|... .+.++|.+|+.. +.+
T Consensus 153 ~~Il~t~~~~-------------kl~~tI~sRc~~-v~f 177 (451)
T PRK06305 153 KFFLATTEIH-------------KIPGTILSRCQK-MHL 177 (451)
T ss_pred eEEEEeCChH-------------hcchHHHHhceE-EeC
Confidence 4555554321 488999999943 444
No 157
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.74 E-value=1.6e-08 Score=107.72 Aligned_cols=140 Identities=11% Similarity=0.156 Sum_probs=80.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe-cc--CCCCCcccceeeeecccccceeeccceE--eeccCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST-TG--RGSSGVGLTAAVTSDQETGERRLEAGAM--VLADRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~-~g--~~~~~~glt~~~~~~~~~g~~~~~~G~l--~la~~gil~IDEidk~ 405 (748)
-++|+||||||||.+++++++.+...+.. ++ ..+..+|-....++.. .-++... ......|+||||||..
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~-----F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQR-----YREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHH-----HHHHHHHhhccCCCeEEEEehhhhc
Confidence 59999999999999999999998775432 21 1111111111111100 0011111 1123569999999976
Q ss_pred Chh---------hH---HHHHHHHhhceEEeecccee--EEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--c
Q 004502 406 NDQ---------DR---VAIHEVMEQQTVTIAKAGIH--ASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--R 469 (748)
Q Consensus 406 ~~~---------~~---~~L~e~me~~~i~i~k~g~~--~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--R 469 (748)
-+. .+ ..|+..|+.=+ .+.-.|.. ..-..+..||+|+|-.. .|+++|++ |
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRpGR 290 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLGGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCc-cccccccccccccCCCceEEEeCCCcc-------------cCCHhHcCCCC
Confidence 432 11 24555555311 11111211 12345788999999865 59999999 9
Q ss_pred ccEEEEecCCCChhHhHHHHHHH
Q 004502 470 FDLLFIVLDQMDPDIDRRISDHV 492 (748)
Q Consensus 470 Fdli~~~~d~~~~~~d~~ia~~i 492 (748)
||-.+. .|+.+....|...+
T Consensus 291 fDk~i~---lPd~e~R~eIL~~~ 310 (413)
T PLN00020 291 MEKFYW---APTREDRIGVVHGI 310 (413)
T ss_pred CCceeC---CCCHHHHHHHHHHH
Confidence 999765 46766665555433
No 158
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7.2e-07 Score=97.67 Aligned_cols=273 Identities=16% Similarity=0.135 Sum_probs=155.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc------EEeccCCCC-Ccccceeee----ecccccceeecc-----ceEe-ecc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA------ISTTGRGSS-GVGLTAAVT----SDQETGERRLEA-----GAMV-LAD 393 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~------~~~~g~~~~-~~glt~~~~----~~~~~g~~~~~~-----G~l~-la~ 393 (748)
|++++|+||||||..++++++.+... +|+...... .......+. .-+.+|....+. ..+. ...
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 79999999999999999998876543 344332111 101110000 111222111000 0000 112
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
.-|++|||+|.+-......|++...-..- ...++.+++.+|...-.. .+.+.+.|+|...
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~----------~~~~v~vi~i~n~~~~~~----------~ld~rv~s~l~~~ 183 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGE----------NKVKVSIIAVSNDDKFLD----------YLDPRVKSSLGPS 183 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccc----------cceeEEEEEEeccHHHHH----------HhhhhhhhccCcc
Confidence 23889999999988866666666542211 145788999999863111 3667777777554
Q ss_pred EEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHH
Q 004502 474 FIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQF 553 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (748)
-+.+++-+.++-..|.
T Consensus 184 ~I~F~pY~a~el~~Il---------------------------------------------------------------- 199 (366)
T COG1474 184 EIVFPPYTAEELYDIL---------------------------------------------------------------- 199 (366)
T ss_pred eeeeCCCCHHHHHHHH----------------------------------------------------------------
Confidence 4333444433322221
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 554 LKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 554 lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
+.....+ .-...+++.+.+++...... ....+|....++|.|--.|.-+++.+|+++|+..|..
T Consensus 200 -~~R~~~~--~~~~~~~~~vl~lia~~~a~-------------~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 200 -RERVEEG--FSAGVIDDDVLKLIAALVAA-------------ESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred -HHHHHhh--ccCCCcCccHHHHHHHHHHH-------------cCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 1111111 12346788888888877754 1227899999999999999999999999999999966
Q ss_pred HHHHhhhhcchhhhhHHHHHHhhhhhcCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcccCccccHHHHHHHHhc
Q 004502 634 ALNFAIYHKELTEMEEREQERQREQEKNPRAEHPGGNDRADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNT 713 (748)
Q Consensus 634 l~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (748)
-+........+. +-+..++..+ .. +.... ..++..++.+.+..
T Consensus 264 ~~~~~~~~~~~~----------------------------~L~~~~ki~L---~~-i~~~~-----~~~~~~~~y~~y~~ 306 (366)
T COG1474 264 EIERDVLEEVLK----------------------------TLPLHQKIVL---LA-IVELT-----VEISTGELYDVYES 306 (366)
T ss_pred HhhHHHHHHHHH----------------------------cCCHhHHHHH---HH-HHHhc-----CCCChHHHHHHHHH
Confidence 554432221110 0112222221 11 22211 23444555555554
Q ss_pred ccC-CCCCHHHHHHHHHHHHhcCCEEEe
Q 004502 714 GMD-AHYSRAEITFLLEKLQDENRVMIA 740 (748)
Q Consensus 714 ~~~-~~~~~~~~~~~l~~l~~~~~~~~~ 740 (748)
... .+.+..++-+.+.+|..-|.+...
T Consensus 307 ~~~~~~~~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 307 LCERLRTSQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHhhhCchHHHHHHHHHHHHhcCeEEee
Confidence 332 233788999999999999988753
No 159
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=7.3e-07 Score=98.57 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=81.2
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeee-
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTS- 375 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~- 375 (748)
++.||+.+++.+.-.+-.|.- .+ ++||+||||+|||++++.+++.+....... ...+....+..
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~------~~-----~~L~~G~~G~GKt~~a~~la~~l~~~~~~~----~~~~~~~~~~~l 82 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHL------AQ-----ALLFCGPRGVGKTTCARILARKINQPGYDD----PNEDFSFNIFEL 82 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCC------Ce-----EEEEECCCCCCHHHHHHHHHHHhcCCCCCC----CCCCCCcceEEe
Confidence 578999999888888775511 12 799999999999999999998765321100 00001000000
Q ss_pred cccc--c--ce--ee-ccceE-eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC
Q 004502 376 DQET--G--ER--RL-EAGAM-VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY 447 (748)
Q Consensus 376 ~~~~--g--~~--~~-~~G~l-~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~ 447 (748)
+... + +. .. +.... ..++..+++|||++.+....++.|+..|++. +..+.+|.++|...
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~~ 149 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATTEKH 149 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeCCcc
Confidence 0000 0 00 00 00111 2345679999999999998889999888742 22344444444321
Q ss_pred CccCCCCCccccCCCChhhhcccc
Q 004502 448 GTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 448 g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
.+.+++.+|+.
T Consensus 150 -------------kl~~~l~sr~~ 160 (367)
T PRK14970 150 -------------KIIPTILSRCQ 160 (367)
T ss_pred -------------cCCHHHHhcce
Confidence 47889999984
No 160
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=3.7e-07 Score=105.82 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=85.3
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE-E--------eccCC----
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI-S--------TTGRG---- 363 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~-~--------~~g~~---- 363 (748)
+++||+.+++.|.-++..|.- .| ++||+||+|+|||++++.+++.+.-.. . .+|..
T Consensus 25 dliGq~~~v~~L~~~~~~gri------~h-----a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGRI------AQ-----AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCCC------Cc-----eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 588999999998888776511 12 599999999999999999999764211 0 11100
Q ss_pred ----CCCcccceeeeeccccc-----ce--eeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEE
Q 004502 364 ----SSGVGLTAAVTSDQETG-----ER--RLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 364 ----~~~~glt~~~~~~~~~g-----~~--~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
....++.. +......| +. ..+... +.+...|++|||++.|+....++|+..||+-
T Consensus 94 ~i~~g~h~Dv~e-~~a~s~~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP------------ 159 (598)
T PRK09111 94 AIMEGRHVDVLE-MDAASHTGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP------------ 159 (598)
T ss_pred HHhcCCCCceEE-ecccccCCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC------------
Confidence 00001100 00000011 00 001011 3456789999999999999999999999852
Q ss_pred eccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 433 LNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 433 l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+..+.+|.++|... .+++++.||+ .+|.+
T Consensus 160 -p~~~~fIl~tte~~-------------kll~tI~SRc-q~~~f 188 (598)
T PRK09111 160 -PPHVKFIFATTEIR-------------KVPVTVLSRC-QRFDL 188 (598)
T ss_pred -CCCeEEEEEeCChh-------------hhhHHHHhhe-eEEEe
Confidence 23444544444322 4778899999 44555
No 161
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.71 E-value=5.9e-07 Score=91.62 Aligned_cols=146 Identities=23% Similarity=0.215 Sum_probs=93.2
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
.||+||||++.++-+.-..||.++|+-- ...||.|+|.-...-.....+..-..+|+.||||. +|
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LI 361 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eE
Confidence 4899999999999999999999998532 23456666653111000111111236999999999 55
Q ss_pred EEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHH
Q 004502 474 FIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQF 553 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (748)
+....+++++. ++|..+-
T Consensus 362 irt~~y~~~e~-r~Ii~~R------------------------------------------------------------- 379 (456)
T KOG1942|consen 362 IRTLPYDEEEI-RQIIKIR------------------------------------------------------------- 379 (456)
T ss_pred EeeccCCHHHH-HHHHHHH-------------------------------------------------------------
Confidence 55544443332 2222110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 554 LKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 554 lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
-+.-.-.++++|...+...- ...|.|-...|+-=+--.|+..+++.|..+||+++-.
T Consensus 380 --------a~~E~l~~~e~a~~~l~~~g---------------t~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 380 --------AQVEGLQVEEEALDLLAEIG---------------TSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred --------HhhhcceecHHHHHHHHhhc---------------cchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 00011246777777665432 2235676667777677789999999999999999999
Q ss_pred HHHHhh
Q 004502 634 ALNFAI 639 (748)
Q Consensus 634 l~~~sl 639 (748)
||-.+-
T Consensus 437 Lf~Dak 442 (456)
T KOG1942|consen 437 LFLDAK 442 (456)
T ss_pred HHHhch
Confidence 997653
No 162
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=3.3e-07 Score=107.02 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=67.9
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEE-eccCCCCC-------
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIS-TTGRGSSG------- 366 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~-~~g~~~~~------- 366 (748)
+.+|+||+.+++.|.-++..|. -.| .+||+||||+|||++++.+++.+.-... ..+.....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~------i~~-----a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR------VAH-----AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC------Cce-----EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 3468899999999887777651 011 4699999999999999999988742110 00000000
Q ss_pred -cccceeee-ecc--ccc-----ce--eeccceEeeccCceeeecCCCcCChhhHHHHHHHHhh
Q 004502 367 -VGLTAAVT-SDQ--ETG-----ER--RLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 367 -~glt~~~~-~~~--~~g-----~~--~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~ 419 (748)
.|....+. -+. ..+ +. ..... -..++..|++|||+++|+.+.++.|+..||+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~-p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe 146 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFR-PALARYKVYIIDEVHMLSTAAFNALLKTLEE 146 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhC-cccCCeEEEEEeChHhCCHHHHHHHHHHHhc
Confidence 00000000 000 000 00 00001 1235678999999999999999999999985
No 163
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.4e-07 Score=104.68 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=67.5
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE------------EeccCC-
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI------------STTGRG- 363 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~------------~~~g~~- 363 (748)
+|+||+.+++.+.-++..|. -.| ++||.||||+|||++|+.+++.+.-.. ..+|.-
T Consensus 17 eivGQe~i~~~L~~~i~~~r------i~h-----a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR------VGH-----GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC------CCe-----eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 58899999998877776651 012 499999999999999999998874311 000100
Q ss_pred -----CCCcccceeeeecc--ccc-cee------eccceEeeccCceeeecCCCcCChhhHHHHHHHHhh
Q 004502 364 -----SSGVGLTAAVTSDQ--ETG-ERR------LEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 364 -----~~~~glt~~~~~~~--~~g-~~~------~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~ 419 (748)
..+..+..... +. ..+ +.. +.-+. ..++..|++|||+++|+...+++|+..||+
T Consensus 86 sC~~~~~g~~~n~~~~-d~~s~~~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEe 153 (620)
T PRK14954 86 SCRDFDAGTSLNISEF-DAASNNSVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEE 153 (620)
T ss_pred HHHHHhccCCCCeEEe-cccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 00000000000 00 000 000 00011 345667999999999999999999999985
No 164
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.66 E-value=3.5e-07 Score=94.60 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 568 ELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 568 ~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
.+++++.++|...+ +-+.|.++.++.... ++.+.-...||...+++++.
T Consensus 186 ~l~~~v~~~L~~~~----------------~~d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 186 ELPEDVGRFLLKRL----------------DREMRTLFMTLDQLD-RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CCCHHHHHHHHHhh----------------cCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHc
Confidence 57899998888754 336788888877653 44444445699999988875
No 165
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-07 Score=93.90 Aligned_cols=127 Identities=23% Similarity=0.337 Sum_probs=75.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE-eccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcC-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS-TTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKM- 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~-~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~- 405 (748)
.|||+||||||||+|++++++-...++. +.|. .+. .+-...|- ......+-+| ...|+||||+|.+
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgs-----efv---qkylgegp-rmvrdvfrlakenapsiifideidaia 261 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS-----EFV---QKYLGEGP-RMVRDVFRLAKENAPSIIFIDEIDAIA 261 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccH-----HHH---HHHhccCc-HHHHHHHHHHhccCCcEEEeehhhhHh
Confidence 4999999999999999999985433321 1110 000 00001110 0111122233 2479999999864
Q ss_pred ----------ChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEE
Q 004502 406 ----------NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLL 473 (748)
Q Consensus 406 ----------~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli 473 (748)
+.+++..|++.+.|-. |. .-.+++-+|.|+|... .|.|+||. |.|--
T Consensus 262 tkrfdaqtgadrevqril~ellnqmd------gf--dq~~nvkvimatnrad-------------tldpallrpgrldrk 320 (408)
T KOG0727|consen 262 TKRFDAQTGADREVQRILIELLNQMD------GF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLDRK 320 (408)
T ss_pred hhhccccccccHHHHHHHHHHHHhcc------Cc--CcccceEEEEecCccc-------------ccCHhhcCCcccccc
Confidence 3567788888886521 21 1234678999999864 58888887 77766
Q ss_pred EEecCCCChhHhHHH
Q 004502 474 FIVLDQMDPDIDRRI 488 (748)
Q Consensus 474 ~~~~d~~~~~~d~~i 488 (748)
+.+ +.|+....+.+
T Consensus 321 ief-plpdrrqkrlv 334 (408)
T KOG0727|consen 321 IEF-PLPDRRQKRLV 334 (408)
T ss_pred ccC-CCCchhhhhhh
Confidence 665 45665544433
No 166
>PRK09087 hypothetical protein; Validated
Probab=98.65 E-value=5e-07 Score=92.71 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=102.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
.++|+|++|+|||+|++++++... ..|+... .++ . ..+.-...++++|||++.+.. .+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~-----~~~---------~------~~~~~~~~~~l~iDDi~~~~~-~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD-ALLIHPN-----EIG---------S------DAANAAAEGPVLIEDIDAGGF-DE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC-CEEecHH-----Hcc---------h------HHHHhhhcCeEEEECCCCCCC-CH
Confidence 599999999999999999887542 2232210 000 0 011111236899999998753 35
Q ss_pred HHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCCCChhHhHHH
Q 004502 411 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQMDPDIDRRI 488 (748)
Q Consensus 411 ~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~~~~~~d~~i 488 (748)
..|++.++.-. .....+|.|++..+..|. ...+.|.|||. +++.+ .+++.+....+
T Consensus 104 ~~lf~l~n~~~------------~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~l-~~pd~e~~~~i 161 (226)
T PRK09087 104 TGLFHLINSVR------------QAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVEI-GEPDDALLSQV 161 (226)
T ss_pred HHHHHHHHHHH------------hCCCeEEEECCCChHHhc---------cccccHHHHHhCCceeec-CCCCHHHHHHH
Confidence 56766664211 112345555554333331 13688999996 55665 45554433222
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCC
Q 004502 489 SDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPE 568 (748)
Q Consensus 489 a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ 568 (748)
|++.+.. ..-.
T Consensus 162 -----------------------------------------------------------------L~~~~~~----~~~~ 172 (226)
T PRK09087 162 -----------------------------------------------------------------IFKLFAD----RQLY 172 (226)
T ss_pred -----------------------------------------------------------------HHHHHHH----cCCC
Confidence 2222221 1236
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 569 LTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 569 ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
+++++.++|.+... -+.|.++.++..-.+.|.... ..+|...+++++.-+
T Consensus 173 l~~ev~~~La~~~~----------------r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VDPHVVYYLVSRME----------------RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCHHHHHHHHHHhh----------------hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 88999998887652 257777776655555555555 468988888888654
No 167
>PRK06620 hypothetical protein; Validated
Probab=98.64 E-value=5.3e-07 Score=91.74 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004502 568 ELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAAL 632 (748)
Q Consensus 568 ~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai 632 (748)
.+++++.++|.... +-+.|.++.++....+.|.... ..||...+.+++
T Consensus 166 ~l~~ev~~~L~~~~----------------~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 166 TISRQIIDFLLVNL----------------PREYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHHHHc----------------cCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 58899999888754 3368999888887666666555 468988888775
No 168
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.63 E-value=1.6e-07 Score=101.59 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=90.6
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEE-ECCCCccHHHHHHHHHHhCCCcE-EeccCCCCCcccceeee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMM-VGDPSVAKSQLLRAIMNIAPLAI-STTGRGSSGVGLTAAVT 374 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL-~G~pGtGKS~l~r~i~~~~~~~~-~~~g~~~~~~glt~~~~ 374 (748)
++.|++.++..+.-.+-.|. .+ |++| +||||+|||++++++++.....+ +..... . . .. ..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~-------~~-----~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~-~~-~i 84 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR-------IP-----NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--R-ID-FV 84 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC-------CC-----eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--c-HH-HH
Confidence 57899998887776665441 11 4555 89999999999999998765433 222211 0 0 00 00
Q ss_pred ecccccceeeccceEeeccCceeeecCCCcC-ChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCC
Q 004502 375 SDQETGERRLEAGAMVLADRGVVCIDEFDKM-NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRS 453 (748)
Q Consensus 375 ~~~~~g~~~~~~G~l~la~~gil~IDEidk~-~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~ 453 (748)
++.. .++ ..... ..+..++++|||++.+ ..+.+..|...|+.. +.++.+|.++|...
T Consensus 85 ~~~l-~~~-~~~~~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~------ 142 (316)
T PHA02544 85 RNRL-TRF-ASTVS-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNKN------ 142 (316)
T ss_pred HHHH-HHH-HHhhc-ccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCChh------
Confidence 0000 000 00000 1245689999999999 667778888888742 24567888888643
Q ss_pred CCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 004502 454 LTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVL 493 (748)
Q Consensus 454 ~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il 493 (748)
.++++|.+||..+ .+ +.|+.+....+...++
T Consensus 143 -------~l~~~l~sR~~~i-~~-~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 143 -------GIIEPLRSRCRVI-DF-GVPTKEEQIEMMKQMI 173 (316)
T ss_pred -------hchHHHHhhceEE-Ee-CCCCHHHHHHHHHHHH
Confidence 4889999999643 33 4555554444544433
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.63 E-value=4.8e-07 Score=109.77 Aligned_cols=203 Identities=15% Similarity=0.123 Sum_probs=115.7
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC----------cEEeccCCCC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL----------AISTTGRGSS 365 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~----------~~~~~g~~~~ 365 (748)
..++|.+...+.++-.|... .+ . |++|+||||||||.+++.++..+.. .++....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-~~------~-----n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~--- 243 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-TK------N-----NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI--- 243 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-cc------C-----CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH---
Confidence 34889988777666666533 11 1 8999999999999999999887532 1221110
Q ss_pred CcccceeeeecccccceeeccceE----eeccCceeeecCCCcCCh--------hhHHHHHHHHhhceEEeeccceeEEe
Q 004502 366 GVGLTAAVTSDQETGERRLEAGAM----VLADRGVVCIDEFDKMND--------QDRVAIHEVMEQQTVTIAKAGIHASL 433 (748)
Q Consensus 366 ~~glt~~~~~~~~~g~~~~~~G~l----~la~~gil~IDEidk~~~--------~~~~~L~e~me~~~i~i~k~g~~~~l 433 (748)
..+.+. ....|+|.-.-..+ ....+.|+||||++.+-. +..+.|..++..|
T Consensus 244 -~~l~ag---~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg------------- 306 (821)
T CHL00095 244 -GLLLAG---TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG------------- 306 (821)
T ss_pred -HHHhcc---CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-------------
Confidence 011110 11123321111111 112346899999986532 2344555555544
Q ss_pred ccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 004502 434 NARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSS 513 (748)
Q Consensus 434 ~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~ 513 (748)
.+.+|+|+|+.+-+ ..+...++|.+||..+ .+ +.++.+.-..|...+......-
T Consensus 307 --~l~~IgaTt~~ey~--------~~ie~D~aL~rRf~~I-~v-~ep~~~e~~aILr~l~~~~e~~-------------- 360 (821)
T CHL00095 307 --ELQCIGATTLDEYR--------KHIEKDPALERRFQPV-YV-GEPSVEETIEILFGLRSRYEKH-------------- 360 (821)
T ss_pred --CcEEEEeCCHHHHH--------HHHhcCHHHHhcceEE-ec-CCCCHHHHHHHHHHHHHHHHHH--------------
Confidence 36788888886311 1124678999999865 33 4455555445555443322100
Q ss_pred CCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhcc
Q 004502 514 RYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQ-PELTDEASEQIATTYAELRNS 587 (748)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~-P~ls~ea~~~i~~~y~~lR~~ 587 (748)
..-.++.+.+.....++..++. -.+++.|.++|-......|-.
T Consensus 361 -------------------------------~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~ 404 (821)
T CHL00095 361 -------------------------------HNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLI 404 (821)
T ss_pred -------------------------------cCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhh
Confidence 0112667777777777765542 247788888888887766653
No 170
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.4e-07 Score=92.95 Aligned_cols=133 Identities=24% Similarity=0.338 Sum_probs=82.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE-eccCCCCCcccceeeeecccccceeeccceEeecc---CceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS-TTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLAD---RGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~-~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~---~gil~IDEidk~~ 406 (748)
.+|++||||||||.++|+++......+. ..| ..|.-.. .+....+...++.+|. ..|+||||+|.+.
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg-----PQLVQMf----IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIG 277 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAG-----PQLVQMF----IGDGAKLVRDAFALAKEKAPTIIFIDELDAIG 277 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcc-----hHHHhhh----hcchHHHHHHHHHHhhccCCeEEEEechhhhc
Confidence 6999999999999999999875433211 111 0111000 0111122223344443 4699999998653
Q ss_pred -----------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEE
Q 004502 407 -----------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLL 473 (748)
Q Consensus 407 -----------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli 473 (748)
.++|..+++.+.|-. | ..-+.++-||||+|... -|.|+||. |.|--
T Consensus 278 tKRfDSek~GDREVQRTMLELLNQLD------G--Fss~~~vKviAATNRvD-------------iLDPALlRSGRLDRK 336 (424)
T KOG0652|consen 278 TKRFDSEKAGDREVQRTMLELLNQLD------G--FSSDDRVKVIAATNRVD-------------ILDPALLRSGRLDRK 336 (424)
T ss_pred cccccccccccHHHHHHHHHHHHhhc------C--CCCccceEEEeeccccc-------------ccCHHHhhccccccc
Confidence 467888899887621 1 12245788999999874 48888887 77776
Q ss_pred EEecCCCChhHhHHHHHHHHHhhhc
Q 004502 474 FIVLDQMDPDIDRRISDHVLRMHRY 498 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~~~~ 498 (748)
+.+ +.|+++.. .+|+..|..
T Consensus 337 IEf-P~Pne~aR----arIlQIHsR 356 (424)
T KOG0652|consen 337 IEF-PHPNEEAR----ARILQIHSR 356 (424)
T ss_pred ccC-CCCChHHH----HHHHHHhhh
Confidence 666 55555543 345666653
No 171
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1e-06 Score=102.93 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=83.7
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEE------eccCC------
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIS------TTGRG------ 363 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~------~~g~~------ 363 (748)
..+.||+.+++.|.-++..+. -.| ++||+||||+|||++++.+++.+..... .+|.-
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r------l~~-----a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR------IAP-----AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCc-----eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence 358899999988887777651 113 7999999999999999999998754210 01100
Q ss_pred CCCcccce-eeeecccccc----eeec-cc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 364 SSGVGLTA-AVTSDQETGE----RRLE-AG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 364 ~~~~glt~-~~~~~~~~g~----~~~~-~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
..+..... .+......+- ..++ .. .-+.+...|++|||+++|+.+..++|+..||+- +..
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~ 151 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPR 151 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcC
Confidence 00000000 0000000000 0000 00 002345579999999999999999999999942 223
Q ss_pred eeEe-eecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 437 CSVV-AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 437 ~~ii-aa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+.+| +|.++. .+.++|.||+.. +.+
T Consensus 152 tvfIL~t~~~~--------------~llpTIrSRc~~-~~f 177 (620)
T PRK14948 152 VVFVLATTDPQ--------------RVLPTIISRCQR-FDF 177 (620)
T ss_pred eEEEEEeCChh--------------hhhHHHHhheeE-EEe
Confidence 4444 444432 377899999944 444
No 172
>PRK04195 replication factor C large subunit; Provisional
Probab=98.61 E-value=1e-06 Score=100.73 Aligned_cols=153 Identities=20% Similarity=0.274 Sum_probs=82.7
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeec
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSD 376 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~ 376 (748)
+++|++.++..+.-.+-... +|.. .-++||+||||+|||++++++++.++..+..... +... .......
T Consensus 15 dlvg~~~~~~~l~~~l~~~~-----~g~~---~~~lLL~GppG~GKTtla~ala~el~~~~ielna--sd~r-~~~~i~~ 83 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWL-----KGKP---KKALLLYGPPGVGKTSLAHALANDYGWEVIELNA--SDQR-TADVIER 83 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHh-----cCCC---CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc--cccc-cHHHHHH
Confidence 47889888877665554321 1100 1189999999999999999999988653322110 0000 0000000
Q ss_pred ccccceeeccceEeeccCceeeecCCCcCCh----hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCC
Q 004502 377 QETGERRLEAGAMVLADRGVVCIDEFDKMND----QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDR 452 (748)
Q Consensus 377 ~~~g~~~~~~G~l~la~~gil~IDEidk~~~----~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~ 452 (748)
. .+. ......+.-....+++|||+|.+.. ....+|+..++. .++.+|.++|...
T Consensus 84 ~-i~~-~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---------------~~~~iIli~n~~~----- 141 (482)
T PRK04195 84 V-AGE-AATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---------------AKQPIILTANDPY----- 141 (482)
T ss_pred H-HHH-hhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---------------CCCCEEEeccCcc-----
Confidence 0 000 0000111112467999999999976 446677777762 2345666777653
Q ss_pred CCCccccCCCCh-hhhccccEEEEecCCCChhHhHHHHHHH
Q 004502 453 SLTPTKNIGLPD-SLLSRFDLLFIVLDQMDPDIDRRISDHV 492 (748)
Q Consensus 453 ~~~~~~ni~l~~-~LlsRFdli~~~~d~~~~~~d~~ia~~i 492 (748)
.++. +|.+|+ ..+.+ ..++...-..+...+
T Consensus 142 --------~~~~k~Lrsr~-~~I~f-~~~~~~~i~~~L~~i 172 (482)
T PRK04195 142 --------DPSLRELRNAC-LMIEF-KRLSTRSIVPVLKRI 172 (482)
T ss_pred --------ccchhhHhccc-eEEEe-cCCCHHHHHHHHHHH
Confidence 2444 677777 44444 444444333333333
No 173
>PHA01747 putative ATP-dependent protease
Probab=98.61 E-value=3.7e-07 Score=96.59 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=105.1
Q ss_pred HHHHHHcccCcccChHH-HHH--HHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC
Q 004502 287 FDLLGNSLAPSIYGHSW-IKK--AVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG 363 (748)
Q Consensus 287 ~~~l~~si~p~i~G~~~-~K~--aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~ 363 (748)
++.|.+|+.-.--+... .|. .+|.-|+-=++. +. -..+.|++=.||+|||||++.+.+..+.|..+ +|..
T Consensus 150 iDlLlrSiGyeP~~~~~r~k~~~l~L~RLiPlVE~--~~---~~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~ 222 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIRNDAVNRLTLPRLLPLFTS--PV---SKRPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEP 222 (425)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhhhheec--cC---CCCCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCC
Confidence 67788887665555422 333 444444422210 00 11456999999999999999999999888876 5544
Q ss_pred CCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC----hhhHHHHHHHHhhceEEeeccceeE--Eeccce
Q 004502 364 SSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN----DQDRVAIHEVMEQQTVTIAKAGIHA--SLNARC 437 (748)
Q Consensus 364 ~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~----~~~~~~L~e~me~~~i~i~k~g~~~--~l~~~~ 437 (748)
.|.+.|. .+..++ ..|.+.+.| ++++||+.... ++....|...|++|.++-.+.+... +..+.+
T Consensus 223 ~TvA~LF----yN~~t~----~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~a 292 (425)
T PHA01747 223 PTYANLV----YDAKTN----ALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCI 292 (425)
T ss_pred CchHHhe----EecCCC----ceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccce
Confidence 4443333 222233 456665544 89999999876 3456777888999998765543333 677789
Q ss_pred eEeeecCCCCCccCCCCC-------cccc-C--CCChhhhcccc
Q 004502 438 SVVAAANPIYGTYDRSLT-------PTKN-I--GLPDSLLSRFD 471 (748)
Q Consensus 438 ~iiaa~Np~~g~~~~~~~-------~~~n-i--~l~~~LlsRFd 471 (748)
+++...|+..-..+.... +.+. + .+.+||||||.
T Consensus 293 siVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIh 336 (425)
T PHA01747 293 PIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIA 336 (425)
T ss_pred eEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhh
Confidence 999998886322111111 1110 1 13789999997
No 174
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.60 E-value=3e-07 Score=110.53 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=77.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccce--eeccceEe---eccCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGER--RLEAGAMV---LADRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~--~~~~G~l~---la~~gil~IDEidk~ 405 (748)
++||+||||||||++++++++.++..++..... .+.... .|+. .+. ..+. .....|+||||+|.+
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~----~i~~~~-----~g~~~~~l~-~lf~~a~~~~p~il~iDEid~l 283 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGP----EIMSKY-----YGESEERLR-EIFKEAEENAPSIIFIDEIDAI 283 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEecH----HHhccc-----ccHHHHHHH-HHHHHHHhcCCcEEEeehhhhh
Confidence 799999999999999999999887654322100 000000 0100 000 0011 112469999999886
Q ss_pred Ch-----------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccE
Q 004502 406 ND-----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDL 472 (748)
Q Consensus 406 ~~-----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdl 472 (748)
.+ ..+..|+..|+.-. -...+.+|+|+|+.. .+++++.+ |||.
T Consensus 284 ~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~-------------~ld~al~r~gRfd~ 339 (733)
T TIGR01243 284 APKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD-------------ALDPALRRPGRFDR 339 (733)
T ss_pred cccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh-------------hcCHHHhCchhccE
Confidence 43 34566777776321 123578899999864 47888887 9999
Q ss_pred EEEecCCCChhHhHHHHH
Q 004502 473 LFIVLDQMDPDIDRRISD 490 (748)
Q Consensus 473 i~~~~d~~~~~~d~~ia~ 490 (748)
.+.+ +.|+.+....|..
T Consensus 340 ~i~i-~~P~~~~R~~Il~ 356 (733)
T TIGR01243 340 EIVI-RVPDKRARKEILK 356 (733)
T ss_pred EEEe-CCcCHHHHHHHHH
Confidence 8887 6677666555544
No 175
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-07 Score=105.46 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=84.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccce--eec---cceEeeccCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGER--RLE---AGAMVLADRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~--~~~---~G~l~la~~gil~IDEidk~ 405 (748)
.|||.||||||||+||++++..+..+++.... ..+...+ +|+. .++ -.+ ......|+||||||.+
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isA----peivSGv-----SGESEkkiRelF~~A-~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISA----PEIVSGV-----SGESEKKIRELFDQA-KSNAPCIVFIDEIDAI 294 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecc----hhhhccc-----CcccHHHHHHHHHHH-hccCCeEEEeeccccc
Confidence 49999999999999999999999887653211 1111111 1211 010 001 1123579999999988
Q ss_pred Chhh-----------HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccE
Q 004502 406 NDQD-----------RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDL 472 (748)
Q Consensus 406 ~~~~-----------~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdl 472 (748)
.+.- ...|+..|+.-. ...+....+.||||+|... .|.++|.+ |||-
T Consensus 295 ~pkRe~aqreMErRiVaQLlt~mD~l~-------~~~~~g~~VlVIgATnRPD-------------slDpaLRRaGRFdr 354 (802)
T KOG0733|consen 295 TPKREEAQREMERRIVAQLLTSMDELS-------NEKTKGDPVLVIGATNRPD-------------SLDPALRRAGRFDR 354 (802)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhccc-------ccccCCCCeEEEecCCCCc-------------ccCHHHhccccccc
Confidence 7642 234444444221 1122345689999999764 48888887 9998
Q ss_pred EEEecCCCChhHhHHHHHHHHH
Q 004502 473 LFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 473 i~~~~d~~~~~~d~~ia~~il~ 494 (748)
-+.+ ..|++.....|.+-+.+
T Consensus 355 EI~l-~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 355 EICL-GVPSETAREEILRIICR 375 (802)
T ss_pred eeee-cCCchHHHHHHHHHHHh
Confidence 7777 67787777777666655
No 176
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1e-06 Score=102.77 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=83.6
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcE-----EeccCC------C
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAI-----STTGRG------S 364 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~-----~~~g~~------~ 364 (748)
+|+||+.+++.+.-++-.|. .+ | +||+||+|+|||++++.+++.+.-.. ..+|.- .
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-------l~-----hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-------LA-----HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------CC-----eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 68899999999888887651 11 5 78999999999999999999764110 001000 0
Q ss_pred CCcccceeeeeccc--cc--ce--ee-ccce-EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 365 SGVGLTAAVTSDQE--TG--ER--RL-EAGA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 365 ~~~glt~~~~~~~~--~g--~~--~~-~~G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
........ .-+.. .+ +. .+ +... -..++..|++|||++.|+.+.+++|+..||+- |..
T Consensus 86 ~~~~~n~~-~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~ 151 (614)
T PRK14971 86 EQRSYNIH-ELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSY 151 (614)
T ss_pred cCCCCceE-EecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------CCC
Confidence 00000000 00000 00 00 00 0000 12345679999999999999999999999852 223
Q ss_pred eeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 437 CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 437 ~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+.+|.+++... .+.++|.||+.+ +.+
T Consensus 152 tifIL~tt~~~-------------kIl~tI~SRc~i-v~f 177 (614)
T PRK14971 152 AIFILATTEKH-------------KILPTILSRCQI-FDF 177 (614)
T ss_pred eEEEEEeCCch-------------hchHHHHhhhhe-eec
Confidence 44444444221 588999999944 444
No 177
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.57 E-value=5e-07 Score=108.21 Aligned_cols=134 Identities=15% Similarity=0.234 Sum_probs=100.6
Q ss_pred cccEEEECCCCccHHHHHHHHHHhCCCcEEecc--CCCCCcccceeeeecccccceeeccceEeec--cCceeeecCCCc
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNIAPLAISTTG--RGSSGVGLTAAVTSDQETGERRLEAGAMVLA--DRGVVCIDEFDK 404 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g--~~~~~~glt~~~~~~~~~g~~~~~~G~l~la--~~gil~IDEidk 404 (748)
+.++||-||+.+|||.+..++++..+..+.-.. ..+......++.+.| .+|...++.|+++-| .|-.+++||++.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd-d~G~lsFkEGvLVeAlR~GyWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD-DDGSLSFKEGVLVEALRRGYWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec-CCCceeeehhHHHHHHhcCcEEEeecccc
Confidence 458999999999999999999999988653321 112222333444433 267778889999877 566899999999
Q ss_pred CChhhHHHHHHHHhh-ceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc
Q 004502 405 MNDQDRVAIHEVMEQ-QTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 405 ~~~~~~~~L~e~me~-~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
++.+++.+|...+++ +.+.|......+.-..+|.++||-||.. .|...+ .|+.|+.+||
T Consensus 967 ApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg-~YgGRK------~LSrAFRNRF 1026 (4600)
T COG5271 967 APTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPG-GYGGRK------GLSRAFRNRF 1026 (4600)
T ss_pred CcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCc-cccchH------HHHHHHHhhh
Confidence 999999999999975 6777776666666667999999999973 332211 5899999999
No 178
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.56 E-value=7.2e-07 Score=108.22 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=86.0
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc----------EEeccCCCC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA----------ISTTGRGSS 365 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~----------~~~~g~~~~ 365 (748)
..++|++..-+.++-.|... ..-|++|+||||+|||++++.++..+..+ ++....+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~-- 243 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG-- 243 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh--
Confidence 34899988665555555533 11189999999999999999999887432 1111000
Q ss_pred Ccccceeeeecccccceeeccc-eE---eec-cCceeeecCCCcCChh--------hHHHHHHHHhhceEEeeccceeEE
Q 004502 366 GVGLTAAVTSDQETGERRLEAG-AM---VLA-DRGVVCIDEFDKMNDQ--------DRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 366 ~~glt~~~~~~~~~g~~~~~~G-~l---~la-~~gil~IDEidk~~~~--------~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
.+.+. ....|++.-.-. .+ ..+ .+.|+||||++.+... ..+.|..+++.|
T Consensus 244 --~l~ag---~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g------------ 306 (857)
T PRK10865 244 --ALVAG---AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG------------ 306 (857)
T ss_pred --hhhhc---cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC------------
Confidence 01100 011222210000 11 011 2459999999988532 344455454433
Q ss_pred eccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHH
Q 004502 433 LNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRIS 489 (748)
Q Consensus 433 l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia 489 (748)
...+|||+++.+-+ ..+++.++|.+||+.+++ ..|+.+.-..+.
T Consensus 307 ---~l~~IgaTt~~e~r--------~~~~~d~al~rRf~~i~v--~eP~~~~~~~iL 350 (857)
T PRK10865 307 ---ELHCVGATTLDEYR--------QYIEKDAALERRFQKVFV--AEPSVEDTIAIL 350 (857)
T ss_pred ---CCeEEEcCCCHHHH--------HHhhhcHHHHhhCCEEEe--CCCCHHHHHHHH
Confidence 46789999986421 123689999999997654 455655444433
No 179
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.56 E-value=3e-06 Score=93.01 Aligned_cols=259 Identities=18% Similarity=0.250 Sum_probs=153.8
Q ss_pred HHHHHHHHhcCccHHHHHHHcccCcccChH-HHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHH
Q 004502 273 DLKSIKKIAERDDTFDLLGNSLAPSIYGHS-WIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 273 ~~~~i~~l~~~~~~~~~l~~si~p~i~G~~-~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
.+..-++-.......+.|.+|+.-+--+.+ ..|..++.-|+-=+ -.+.|++=.||.|||||.+.+ +
T Consensus 161 ~~~~~R~~FT~eEWiD~LlrS~G~eP~~~~~r~Kl~~L~RLiPlV----------E~N~NliELgPrGTGKS~vy~---e 227 (457)
T PF13337_consen 161 EYREARKEFTTEEWIDLLLRSIGYEPSGFSERQKLLLLARLIPLV----------ERNYNLIELGPRGTGKSYVYK---E 227 (457)
T ss_pred HHHHHHHhcCHHHHHHHHHHhcCCCccccCHHHHHHHHHhHHHhc----------ccccceEEEcCCCCCceeehh---h
Confidence 333333333345567888898766555543 35666666666433 344599999999999999965 5
Q ss_pred hCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC---hhhHHHHHHHHhhceEEeeccc
Q 004502 352 IAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN---DQDRVAIHEVMEQQTVTIAKAG 428 (748)
Q Consensus 352 ~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~---~~~~~~L~e~me~~~i~i~k~g 428 (748)
++|-++.++|...|.+.|.... .++ +.|.+..-| ++++||+..+. ++....|-..|++|.++..+
T Consensus 228 iSp~~~liSGG~~T~A~LFyn~----~~~----~~GlV~~~D--~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG~-- 295 (457)
T PF13337_consen 228 ISPYGILISGGQVTVAKLFYNM----STG----QIGLVGRWD--VVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRGK-- 295 (457)
T ss_pred cCcccEEEECCCcchHHheeec----cCC----cceeeeecc--EEEEEeccCcccCChHHHHHHHHHHhccceeecc--
Confidence 5666788887666655554322 222 456665544 89999998875 55567888899999987543
Q ss_pred eeEEeccceeEeeecCCCC--CccCCCCC----ccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccC
Q 004502 429 IHASLNARCSVVAAANPIY--GTYDRSLT----PTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVM 502 (748)
Q Consensus 429 ~~~~l~~~~~iiaa~Np~~--g~~~~~~~----~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~ 502 (748)
.+..+.++++...|... ........ +.+... ..||+|||..++.=.+.|.-..+ + +.
T Consensus 296 --~~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~-DsAflDRiH~~iPGWeiPk~~~e-----~-~t-------- 358 (457)
T PF13337_consen 296 --EEINADASMVFVGNINQSVENMLKTSHLFEPLPEEMR-DSAFLDRIHGYIPGWEIPKIRPE-----M-FT-------- 358 (457)
T ss_pred --cccccceeEEEEcCcCCcchhccccchhhhhcCHHHH-HHHHHhHhheeccCccccccCHH-----H-cc--------
Confidence 35667788888888652 11111111 111122 66778888655543333321110 0 00
Q ss_pred CCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 004502 503 DGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYA 582 (748)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~ 582 (748)
....+..+.|-.++..-|.. .-...+.+ |.
T Consensus 359 ------------------------------------------~~~gl~~Dy~aE~l~~LR~~-------~~~~~~~~-~~ 388 (457)
T PF13337_consen 359 ------------------------------------------NGYGLIVDYFAEILHELRKQ-------SYSDAVDK-YF 388 (457)
T ss_pred ------------------------------------------CCceeeHHHHHHHHHHHHHH-------HHHHHHHh-hE
Confidence 01223344555555443320 11111111 11
Q ss_pred HHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCC-CCccHHHHHHHHHH
Q 004502 583 ELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLN-RKISKSDVEAALKA 634 (748)
Q Consensus 583 ~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~-~~V~~~Dv~~Ai~l 634 (748)
.+ .-.++.|.-.++-|++.+..||-.- ..++.+|++++++.
T Consensus 389 ~l-----------g~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~~ 430 (457)
T PF13337_consen 389 KL-----------GSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLRP 430 (457)
T ss_pred ee-----------CCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Confidence 11 1347889999999999999999664 48899998877663
No 180
>PRK08727 hypothetical protein; Validated
Probab=98.55 E-value=1.5e-06 Score=89.79 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=68.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC----cEEeccCCCCCcccceeeeecccccceeeccceE-eeccCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL----AISTTGRGSSGVGLTAAVTSDQETGERRLEAGAM-VLADRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~----~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l-~la~~gil~IDEidk~ 405 (748)
.++|+|++|||||+|+++++..+.. ..|++.. .+. +. + +..+ .+.+-.+++|||++.+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~-----~~~---------~~--~-~~~~~~l~~~dlLiIDDi~~l 105 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ-----AAA---------GR--L-RDALEALEGRSLVALDGLESI 105 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH-----Hhh---------hh--H-HHHHHHHhcCCEEEEeCcccc
Confidence 4999999999999999998765432 1222210 000 00 0 0000 1123358999999988
Q ss_pred C--hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc--cEEEEecCCCC
Q 004502 406 N--DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF--DLLFIVLDQMD 481 (748)
Q Consensus 406 ~--~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF--dli~~~~d~~~ 481 (748)
. +..+..++..++... .....+|.|+|-.+..|. .+.+.|.||| .+++.+ ++++
T Consensus 106 ~~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~---------~~~~dL~SRl~~~~~~~l-~~~~ 163 (233)
T PRK08727 106 AGQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGLA---------LVLPDLRSRLAQCIRIGL-PVLD 163 (233)
T ss_pred cCChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhh---------hhhHHHHHHHhcCceEEe-cCCC
Confidence 6 344567777766432 113457777775544442 3679999998 455665 5555
Q ss_pred hhH
Q 004502 482 PDI 484 (748)
Q Consensus 482 ~~~ 484 (748)
.+.
T Consensus 164 ~e~ 166 (233)
T PRK08727 164 DVA 166 (233)
T ss_pred HHH
Confidence 443
No 181
>PRK06893 DNA replication initiation factor; Validated
Probab=98.55 E-value=6.8e-07 Score=92.06 Aligned_cols=180 Identities=20% Similarity=0.243 Sum_probs=100.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC----CcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP----LAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~----~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~ 406 (748)
.++|+||||||||+|++++++.+- ...|...... +. .....++ .+.+..+++|||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-----------~~-~~~~~~~----~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-----------QY-FSPAVLE----NLEQQDLVCLDDLQAVI 104 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-----------hh-hhHHHHh----hcccCCEEEEeChhhhc
Confidence 589999999999999999997652 2223221000 00 0000000 12244699999999875
Q ss_pred --hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCCCCh
Q 004502 407 --DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQMDP 482 (748)
Q Consensus 407 --~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~~~~ 482 (748)
+.....|+..++... .. ....++.|+|..+..++ ...+.|.||+- +++.+ ..++.
T Consensus 105 ~~~~~~~~l~~l~n~~~----~~-------~~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~l-~~pd~ 163 (229)
T PRK06893 105 GNEEWELAIFDLFNRIK----EQ-------GKTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQL-NDLTD 163 (229)
T ss_pred CChHHHHHHHHHHHHHH----Hc-------CCcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeeeC-CCCCH
Confidence 333456777766321 00 11234445554333331 13478899874 55655 55554
Q ss_pred hHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHH
Q 004502 483 DIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAK 562 (748)
Q Consensus 483 ~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar 562 (748)
+....+ |++.+. .+
T Consensus 164 e~~~~i-----------------------------------------------------------------L~~~a~-~~ 177 (229)
T PRK06893 164 EQKIIV-----------------------------------------------------------------LQRNAY-QR 177 (229)
T ss_pred HHHHHH-----------------------------------------------------------------HHHHHH-Hc
Confidence 433222 221111 11
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004502 563 HRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 563 ~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
.-.+++++.++|.... +-+.|.|+.++..-. .|.+.-...||...|++++.
T Consensus 178 ---~l~l~~~v~~~L~~~~----------------~~d~r~l~~~l~~l~-~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 178 ---GIELSDEVANFLLKRL----------------DRDMHTLFDALDLLD-KASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred ---CCCCCHHHHHHHHHhc----------------cCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHhc
Confidence 2367899998887654 336788888776554 34444334799999988764
No 182
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.54 E-value=3.5e-07 Score=102.88 Aligned_cols=187 Identities=13% Similarity=0.219 Sum_probs=104.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC----cEEeccCCCCCcccceeeeecccccce-eeccceEeeccCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL----AISTTGRGSSGVGLTAAVTSDQETGER-RLEAGAMVLADRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~----~~~~~g~~~~~~glt~~~~~~~~~g~~-~~~~G~l~la~~gil~IDEidk~ 405 (748)
+++|+|+||+|||+|++++++.+.. .+|++.. .++.........+.. .+. -.+....+++|||++.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~-----~f~~~~~~~l~~~~~~~f~---~~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE-----LFTEHLVSAIRSGEMQRFR---QFYRNVDALFIEDIEVF 214 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH-----HHHHHHHHHHhcchHHHHH---HHcccCCEEEEcchhhh
Confidence 6999999999999999999986532 2333211 111000000001100 000 01234569999999998
Q ss_pred Ch--hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCCCC
Q 004502 406 ND--QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQMD 481 (748)
Q Consensus 406 ~~--~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~~~ 481 (748)
.. ..+..++..++... ..| -.+|.|+|..+..+ -.+.+.|.|||. +++.+ .+|+
T Consensus 215 ~~k~~~qeelf~l~N~l~----~~~--------k~IIlts~~~p~~l---------~~l~~rL~SR~~~Gl~~~l-~~pd 272 (445)
T PRK12422 215 SGKGATQEEFFHTFNSLH----TEG--------KLIVISSTCAPQDL---------KAMEERLISRFEWGIAIPL-HPLT 272 (445)
T ss_pred cCChhhHHHHHHHHHHHH----HCC--------CcEEEecCCCHHHH---------hhhHHHHHhhhcCCeEEec-CCCC
Confidence 54 34566666654321 001 23445554322111 147899999996 67776 4455
Q ss_pred hhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHH
Q 004502 482 PDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYA 561 (748)
Q Consensus 482 ~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~a 561 (748)
.+....+..+ ...
T Consensus 273 ~e~r~~iL~~-----------------------------------------------------------------k~~-- 285 (445)
T PRK12422 273 KEGLRSFLER-----------------------------------------------------------------KAE-- 285 (445)
T ss_pred HHHHHHHHHH-----------------------------------------------------------------HHH--
Confidence 4433222221 111
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHH---HHHHHhcCCCCccHHHHHHHHH
Q 004502 562 KHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLS---TAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 562 r~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla---~A~Akl~~~~~V~~~Dv~~Ai~ 633 (748)
.....+++++.++|...+ .-+.|.|+..+... .|.+.+..+ .++.+++++++.
T Consensus 286 --~~~~~l~~evl~~la~~~----------------~~dir~L~g~l~~l~~~~a~~~~~~~-~i~~~~~~~~l~ 341 (445)
T PRK12422 286 --ALSIRIEETALDFLIEAL----------------SSNVKSLLHALTLLAKRVAYKKLSHQ-LLYVDDIKALLH 341 (445)
T ss_pred --HcCCCCCHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHH
Confidence 123467888888887643 23578887765544 477777664 588888888876
No 183
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.3e-06 Score=101.25 Aligned_cols=224 Identities=21% Similarity=0.227 Sum_probs=138.6
Q ss_pred cEEEEC----CCCccHHHHHHHHHHhCCC--------------------cEEeccCCCCCcccceeeeeccccc------
Q 004502 331 NMMMVG----DPSVAKSQLLRAIMNIAPL--------------------AISTTGRGSSGVGLTAAVTSDQETG------ 380 (748)
Q Consensus 331 ~iLL~G----~pGtGKS~l~r~i~~~~~~--------------------~~~~~g~~~~~~glt~~~~~~~~~g------ 380 (748)
|+.+.| .+|.+++...+.+...... .-.+.........|.+.+..++..|
T Consensus 133 ~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~ 212 (647)
T COG1067 133 QIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTG 212 (647)
T ss_pred hhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCC
Confidence 455555 7888888877655444221 1112222333445666666666544
Q ss_pred ceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeec-----ccee---EEeccceeEeeecCCCCCccCC
Q 004502 381 ERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAK-----AGIH---ASLNARCSVVAAANPIYGTYDR 452 (748)
Q Consensus 381 ~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k-----~g~~---~~l~~~~~iiaa~Np~~g~~~~ 452 (748)
...++||++-.||+|||||||+..+....+..++.+|.+++..+.- .|.. -..|+++.++++.|+..= +
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l-~-- 289 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDL-E-- 289 (647)
T ss_pred cccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHH-H--
Confidence 4567899999999999999999999988888999998876443321 1111 245678888888887520 0
Q ss_pred CCCccccCCCChhhhcccc---EEEEecCCCC--hhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhh
Q 004502 453 SLTPTKNIGLPDSLLSRFD---LLFIVLDQMD--PDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASV 527 (748)
Q Consensus 453 ~~~~~~ni~l~~~LlsRFd---li~~~~d~~~--~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (748)
.+.+++-||.+ .-..+.++.. ++...+.+..+
T Consensus 290 --------~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~----------------------------------- 326 (647)
T COG1067 290 --------DLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFY----------------------------------- 326 (647)
T ss_pred --------hhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHH-----------------------------------
Confidence 23333333333 3233322211 12222222222
Q ss_pred HHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhh
Q 004502 528 FVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHR-IQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLET 606 (748)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~-~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~Les 606 (748)
+....+. =-|.++.+|.+.|...... ..+. ....++.+|.|-.
T Consensus 327 ------------------------------~q~v~~d~~ip~~~~~Av~~li~~a~R--~Ag~----~~~Ltl~~rdl~~ 370 (647)
T COG1067 327 ------------------------------VQELARDGNIPHLDKDAVEELIREAAR--RAGD----QNKLTLRLRDLGN 370 (647)
T ss_pred ------------------------------HHHHHhcCCCCCCCHHHHHHHHHHHHH--hccc----cceeccCHHHHHH
Confidence 1111111 2356777777777665433 2221 2348899999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004502 607 IIRLSTAHAKMKLNRKISKSDVEAALKALN 636 (748)
Q Consensus 607 liRla~A~Akl~~~~~V~~~Dv~~Ai~l~~ 636 (748)
|+|.|--.|+.+.++.++.+||++|+...+
T Consensus 371 lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~ 400 (647)
T COG1067 371 LVREAGDIAVSEGRKLITAEDVEEALQKRE 400 (647)
T ss_pred HHHHhhHHHhcCCcccCcHHHHHHHHHhhh
Confidence 999999999999999999999999998743
No 184
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=3.9e-07 Score=100.72 Aligned_cols=158 Identities=13% Similarity=0.175 Sum_probs=90.7
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE---EeccC--------C
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI---STTGR--------G 363 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~---~~~g~--------~ 363 (748)
..+|+||+.+++.+.-++..+.......+.+. .-.+||.||||+|||++++.+++.+.-.. ..+|. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l--~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGM--THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCC--CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 45789999999998888876521110001000 01499999999999999999988653210 00000 0
Q ss_pred CCCcccceeeeec-cccc--c--eeec-cc-eEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 364 SSGVGLTAAVTSD-QETG--E--RRLE-AG-AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 364 ~~~~glt~~~~~~-~~~g--~--~~~~-~G-~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
.+..++.. +..+ ...+ + ...+ .. .-..++..|++|||+++|++...++|+..||+-. +..
T Consensus 82 ~~hpD~~~-i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~ 148 (394)
T PRK07940 82 GTHPDVRV-VAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP------------PRT 148 (394)
T ss_pred CCCCCEEE-eccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCC
Confidence 00011100 0000 0000 0 0000 00 0012345699999999999999999999998521 123
Q ss_pred eeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChh
Q 004502 437 CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPD 483 (748)
Q Consensus 437 ~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~ 483 (748)
..|++|+||. .+++++.||+ ..+.+ ..++.+
T Consensus 149 ~fIL~a~~~~--------------~llpTIrSRc-~~i~f-~~~~~~ 179 (394)
T PRK07940 149 VWLLCAPSPE--------------DVLPTIRSRC-RHVAL-RTPSVE 179 (394)
T ss_pred eEEEEECChH--------------HChHHHHhhC-eEEEC-CCCCHH
Confidence 5677777764 4899999999 55555 444443
No 185
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.51 E-value=2.5e-06 Score=93.09 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=76.1
Q ss_pred ccHHHHHHHcccCcccChHH-HHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccC
Q 004502 284 DDTFDLLGNSLAPSIYGHSW-IKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR 362 (748)
Q Consensus 284 ~~~~~~l~~si~p~i~G~~~-~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~ 362 (748)
....+.|.+|+.-+--+.+. .|...+..++.- +..+-|++++||||||||+++..+.... ...+|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~f----------ve~~~Nli~lGp~GTGKThla~~l~~~~---a~~sG~ 239 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPL----------VEPNYNLIELGPKGTGKSYIYNNLSPYV---ILISGG 239 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHH----------HhcCCcEEEECCCCCCHHHHHHHHhHHH---HHHcCC
Confidence 44567788886655555443 232233323111 2233499999999999999999876541 122333
Q ss_pred CCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh----hhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 363 GSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND----QDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 363 ~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~----~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
..+.+.|..... + -..|.+ +.-.+++|||+..++. +....|...|++|.++.. ... ..+.++
T Consensus 240 f~T~a~Lf~~L~----~----~~lg~v--~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG--~~~--~~a~as 305 (449)
T TIGR02688 240 TITVAKLFYNIS----T----RQIGLV--GRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRG--DET--KSSDAS 305 (449)
T ss_pred cCcHHHHHHHHH----H----HHHhhh--ccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceecc--cee--eeeeeE
Confidence 233333322111 1 122332 3345999999998543 345778888999987643 333 334555
Q ss_pred EeeecCC
Q 004502 439 VVAAANP 445 (748)
Q Consensus 439 iiaa~Np 445 (748)
++.-.|-
T Consensus 306 ~vfvGNi 312 (449)
T TIGR02688 306 FVFLGNV 312 (449)
T ss_pred EEEEccc
Confidence 5555554
No 186
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.51 E-value=4.7e-07 Score=102.16 Aligned_cols=194 Identities=14% Similarity=0.237 Sum_probs=109.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC------cEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL------AISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~------~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk 404 (748)
+++|+|++|+|||+|++++++.+.. .+|++.. .+..........+...++.-.-...+-.+++|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~-----~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD-----EFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH-----HHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccc
Confidence 6999999999999999999885421 1233211 1111000000000000000000012345999999998
Q ss_pred CC--hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCCC
Q 004502 405 MN--DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQM 480 (748)
Q Consensus 405 ~~--~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~~ 480 (748)
+. +..+..|+..++...- .+-.+|.|+|-.+... -.+.+.|.|||. +++.+ .+|
T Consensus 218 l~~k~~~~e~lf~l~N~~~~------------~~k~iIltsd~~P~~l---------~~l~~rL~SR~~~Gl~~~L-~~p 275 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFIE------------NDKQLFFSSDKSPELL---------NGFDNRLITRFNMGLSIAI-QKL 275 (450)
T ss_pred ccCCHHHHHHHHHHHHHHHH------------cCCcEEEECCCCHHHH---------hhccHHHHHHHhCCceecc-CCc
Confidence 86 5567778777764321 1113555655432211 137889999995 44444 556
Q ss_pred ChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHH
Q 004502 481 DPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHY 560 (748)
Q Consensus 481 ~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ 560 (748)
+.+....+..+.+. .
T Consensus 276 d~e~r~~iL~~~~~-----------------------------------------------------------------~ 290 (450)
T PRK14087 276 DNKTATAIIKKEIK-----------------------------------------------------------------N 290 (450)
T ss_pred CHHHHHHHHHHHHH-----------------------------------------------------------------h
Confidence 65544444333222 1
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCC-CCccHHHHHHHHHH
Q 004502 561 AKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLN-RKISKSDVEAALKA 634 (748)
Q Consensus 561 ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~-~~V~~~Dv~~Ai~l 634 (748)
. .+...+++++.++|.... .-++|.|+.++.-.-+.|.+... ..|+.+.|.+|+.=
T Consensus 291 ~--gl~~~l~~evl~~Ia~~~----------------~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 291 Q--NIKQEVTEEAINFISNYY----------------SDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred c--CCCCCCCHHHHHHHHHcc----------------CCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 0 122257888888887654 34689998877655566766643 57888888888763
No 187
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.49 E-value=3.6e-06 Score=86.32 Aligned_cols=137 Identities=18% Similarity=0.313 Sum_probs=79.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
.-.+.||+|||||...+.+++.+++.+++..-.. ++....... +-.|. ...|..+|+|||++++.+.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~---~~~~~~l~r-------il~G~--~~~GaW~cfdefnrl~~~vL 101 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSE---QMDYQSLSR-------ILKGL--AQSGAWLCFDEFNRLSEEVL 101 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTS---SS-HHHHHH-------HHHHH--HHHT-EEEEETCCCSSHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccc---cccHHHHHH-------HHHHH--hhcCchhhhhhhhhhhHHHH
Confidence 3568999999999999999999999876643211 111110000 01111 11356799999999999887
Q ss_pred HHHHHH-------HhhceEEeeccceeEEeccceeEeeecCCCC-CccCCCCCccccCCCChhhhccccEEEEecCCCCh
Q 004502 411 VAIHEV-------MEQQTVTIAKAGIHASLNARCSVVAAANPIY-GTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDP 482 (748)
Q Consensus 411 ~~L~e~-------me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~ 482 (748)
..+.+- +..+.-.+.-.|....++..+.++.|+||.+ |+. .||+.|..-|--+-.+ .||.
T Consensus 102 S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~----------~LP~nLk~lFRpvam~--~PD~ 169 (231)
T PF12774_consen 102 SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRS----------ELPENLKALFRPVAMM--VPDL 169 (231)
T ss_dssp HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC------------S-HHHCTTEEEEE----S--H
T ss_pred HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcc----------cCCHhHHHHhheeEEe--CCCH
Confidence 666443 3333333444588888899999999999975 322 6999999888555444 3443
Q ss_pred hHhHHHHHHHHH
Q 004502 483 DIDRRISDHVLR 494 (748)
Q Consensus 483 ~~d~~ia~~il~ 494 (748)
. .|++-.|.
T Consensus 170 ~---~I~ei~L~ 178 (231)
T PF12774_consen 170 S---LIAEILLL 178 (231)
T ss_dssp H---HHHHHHHH
T ss_pred H---HHHHHHHH
Confidence 2 45665555
No 188
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.3e-07 Score=96.37 Aligned_cols=135 Identities=20% Similarity=0.230 Sum_probs=84.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe-ccCCCCCcccceeee-ecccccceeeccceEeeccCc-eeeecCCC----
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST-TGRGSSGVGLTAAVT-SDQETGERRLEAGAMVLADRG-VVCIDEFD---- 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~-~g~~~~~~glt~~~~-~~~~~g~~~~~~G~l~la~~g-il~IDEid---- 403 (748)
|||++||||||||+++|-++.-++..+-+ +|.. -+.|.+..+ +--.--+|.. .+..| ++||||.|
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGD--VAPlG~qaVTkiH~lFDWak------kS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGD--VAPLGAQAVTKIHKLFDWAK------KSRRGLLLFIDEADAFLC 457 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCC--ccccchHHHHHHHHHHHHHh------hcccceEEEehhhHHHHH
Confidence 89999999999999999999987664322 2211 111111100 0000001211 12233 78999997
Q ss_pred -----cCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecC
Q 004502 404 -----KMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLD 478 (748)
Q Consensus 404 -----k~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d 478 (748)
.|++..+.+|...|= +.|.. .-++.++.|+|..+ +|+.+.-||||-++.+ +
T Consensus 458 eRnktymSEaqRsaLNAlLf-------RTGdq---SrdivLvlAtNrpg-------------dlDsAV~DRide~veF-p 513 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALLF-------RTGDQ---SRDIVLVLATNRPG-------------DLDSAVNDRIDEVVEF-P 513 (630)
T ss_pred HhchhhhcHHHHHHHHHHHH-------Hhccc---ccceEEEeccCCcc-------------chhHHHHhhhhheeec-C
Confidence 467777777766552 22221 12567777788764 5889999999998887 7
Q ss_pred CCChhHhHHHHHHHHHhhh
Q 004502 479 QMDPDIDRRISDHVLRMHR 497 (748)
Q Consensus 479 ~~~~~~d~~ia~~il~~~~ 497 (748)
.|-+++..++....++.|.
T Consensus 514 LPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 514 LPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred CCChHHHHHHHHHHHHHHh
Confidence 7877777777766666554
No 189
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.49 E-value=6.1e-07 Score=100.53 Aligned_cols=188 Identities=19% Similarity=0.208 Sum_probs=105.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC------cEEeccCCCCCcccceeeeecccccce-eeccceEeeccCceeeecCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL------AISTTGRGSSGVGLTAAVTSDQETGER-RLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~------~~~~~g~~~~~~glt~~~~~~~~~g~~-~~~~G~l~la~~gil~IDEid 403 (748)
+++|+|+||+|||+|++++++.+.. .+|++.. .+..........+.. .+. . .+....+++|||++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~-----~~~~~~~~~~~~~~~~~~~-~--~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE-----KFTNDFVNALRNNKMEEFK-E--KYRSVDLLLIDDIQ 209 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH-----HHHHHHHHHHHcCCHHHHH-H--HHHhCCEEEEehhh
Confidence 5899999999999999999876521 1233211 111000000000000 000 0 01234699999999
Q ss_pred cCChh--hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCC
Q 004502 404 KMNDQ--DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQ 479 (748)
Q Consensus 404 k~~~~--~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~ 479 (748)
.+... .+..|+..++... . ....++.|+|-.+...+ .+.+.|.|||. +++.+ .+
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~----~--------~~~~iiits~~~p~~l~---------~l~~~l~SRl~~g~~v~i-~~ 267 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALH----E--------NGKQIVLTSDRPPKELP---------GLEERLRSRFEWGLVVDI-EP 267 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHH----H--------CCCCEEEecCCCHHHHh---------hhhhhhhhhccCCeEEEe-CC
Confidence 87543 4555666665321 0 01224444543222110 36788999996 45555 66
Q ss_pred CChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 480 MDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 480 ~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
|+.+....+....+.
T Consensus 268 pd~~~r~~il~~~~~----------------------------------------------------------------- 282 (405)
T TIGR00362 268 PDLETRLAILQKKAE----------------------------------------------------------------- 282 (405)
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 776654444332211
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 560 YAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 560 ~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
. ....+++++.++|.+.+ .-++|.|+.++..-.+.|.+.. ..+|.+.+.+++.-
T Consensus 283 ~----~~~~l~~e~l~~ia~~~----------------~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 283 E----EGLELPDEVLEFIAKNI----------------RSNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred H----cCCCCCHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 0 12357778877777543 3367889888877778887765 45888888877764
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.47 E-value=4.5e-07 Score=110.35 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=83.9
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcE---EeccCCCCCcccceee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI---STTGRGSSGVGLTAAV 373 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~---~~~g~~~~~~glt~~~ 373 (748)
.++|++..-+.++-.|..+. + . |++|+||||+|||++++.++..+.... +..+...-...+.+.+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~-~------~-----n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT-K------N-----NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC-C------C-----ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 48999887666666665431 1 1 799999999999999999998764321 0000000000000000
Q ss_pred eecccccceeec-cceEe---e-ccCceeeecCCCcCCh--------hhHHHHHHHHhhceEEeeccceeEEeccceeEe
Q 004502 374 TSDQETGERRLE-AGAMV---L-ADRGVVCIDEFDKMND--------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVV 440 (748)
Q Consensus 374 ~~~~~~g~~~~~-~G~l~---l-a~~gil~IDEidk~~~--------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ii 440 (748)
......|++.-. ...+. . ..+.|+||||++.+.. +..+.|..+++. .+..+|
T Consensus 242 a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~---------------g~i~~I 306 (852)
T TIGR03346 242 AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR---------------GELHCI 306 (852)
T ss_pred hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc---------------CceEEE
Confidence 000111221100 00110 1 1246999999998752 223333333332 246788
Q ss_pred eecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHH
Q 004502 441 AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISD 490 (748)
Q Consensus 441 aa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~ 490 (748)
+|+|+..-+ ..+.+.++|.+||..++ + ..|+.+.-..|..
T Consensus 307 gaTt~~e~r--------~~~~~d~al~rRf~~i~-v-~~p~~~~~~~iL~ 346 (852)
T TIGR03346 307 GATTLDEYR--------KYIEKDAALERRFQPVF-V-DEPTVEDTISILR 346 (852)
T ss_pred EeCcHHHHH--------HHhhcCHHHHhcCCEEE-e-CCCCHHHHHHHHH
Confidence 998886311 11368999999998754 4 5566554444433
No 191
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.2e-07 Score=101.57 Aligned_cols=170 Identities=21% Similarity=0.274 Sum_probs=102.1
Q ss_pred CcccChHHHHHHHHHHHhCCccc-ccCCC--ccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCccccee
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEK-NLKNG--THLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAA 372 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~-~~~~~--~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~ 372 (748)
-.|-|.+.+|+++.-+.+-+.-+ ..-.| ...| .+||.||||+|||+|++++|..+...++-. ++..|+..
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~r---glLLfGPpgtGKtmL~~aiAsE~~atff~i----SassLtsK 225 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVR---GLLLFGPPGTGKTMLAKAIATESGATFFNI----SASSLTSK 225 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccccccc---hhheecCCCCchHHHHHHHHhhhcceEeec----cHHHhhhh
Confidence 45789999988876554422110 00011 1233 499999999999999999998876544321 12223322
Q ss_pred eeecccccceeeccceEeec---cCceeeecCCCcCC--------hhhHHHHHHHHhhceEEeeccceeEEeccceeEee
Q 004502 373 VTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMN--------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVA 441 (748)
Q Consensus 373 ~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~--------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iia 441 (748)
...+ ++..++ ..+..| ..+|+||||+|++= +..+....+++-+ ..|....-+.++.|++
T Consensus 226 ~~Ge---~eK~vr-alf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 226 YVGE---SEKLVR-ALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLVIG 295 (428)
T ss_pred ccCh---HHHHHH-HHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhh------hccccCCCCCeEEEEe
Confidence 2111 111111 111122 35799999998751 1222233333322 1233333345899999
Q ss_pred ecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhh
Q 004502 442 AANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMH 496 (748)
Q Consensus 442 a~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~ 496 (748)
|+|..+ .+..+++.||-=++.+ +.|+.+....+..+.|.-+
T Consensus 296 aTN~P~-------------e~Dea~~Rrf~kr~yi-plPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 296 ATNRPW-------------ELDEAARRRFVKRLYI-PLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred cCCCch-------------HHHHHHHHHhhceeee-cCCCHHHHHHHHHHHHHhC
Confidence 999876 6899999999666665 8899988888888887754
No 192
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.45 E-value=6.4e-07 Score=101.64 Aligned_cols=189 Identities=21% Similarity=0.235 Sum_probs=107.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC------cEEeccCCCCCcccceeeeecccccc-eeeccceEeeccCceeeecCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL------AISTTGRGSSGVGLTAAVTSDQETGE-RRLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~------~~~~~g~~~~~~glt~~~~~~~~~g~-~~~~~G~l~la~~gil~IDEid 403 (748)
+++|+|+||+|||+|++++++.+.. .+|++.. .+..........+. ..+. . .+..-.+++|||++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~-----~~~~~~~~~~~~~~~~~~~-~--~~~~~dlLiiDDi~ 221 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE-----KFTNDFVNALRNNTMEEFK-E--KYRSVDVLLIDDIQ 221 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH-----HHHHHHHHHHHcCcHHHHH-H--HHhcCCEEEEehhh
Confidence 5999999999999999999987532 1232211 11100000000000 0000 0 11134599999999
Q ss_pred cCChh--hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCC
Q 004502 404 KMNDQ--DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQ 479 (748)
Q Consensus 404 k~~~~--~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~ 479 (748)
.+... .+..|+..++... ..| ...++ ++|-.+..++ .+.+.|.|||. +++.+ .+
T Consensus 222 ~l~~~~~~~~~l~~~~n~l~----~~~-------~~iii-ts~~~p~~l~---------~l~~~l~SRl~~gl~v~i-~~ 279 (450)
T PRK00149 222 FLAGKERTQEEFFHTFNALH----EAG-------KQIVL-TSDRPPKELP---------GLEERLRSRFEWGLTVDI-EP 279 (450)
T ss_pred hhcCCHHHHHHHHHHHHHHH----HCC-------CcEEE-ECCCCHHHHH---------HHHHHHHhHhcCCeeEEe-cC
Confidence 87543 3555666554321 001 12334 4443222210 26789999996 56666 66
Q ss_pred CChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 480 MDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 480 ~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
|+.+....+......
T Consensus 280 pd~~~r~~il~~~~~----------------------------------------------------------------- 294 (450)
T PRK00149 280 PDLETRIAILKKKAE----------------------------------------------------------------- 294 (450)
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 666544443332211
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502 560 YAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL 635 (748)
Q Consensus 560 ~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~ 635 (748)
. ....+++++.++|.+.+ .-++|.|+.++....+.|.+..+ .++.+.+.+++.-+
T Consensus 295 ~----~~~~l~~e~l~~ia~~~----------------~~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~ 349 (450)
T PRK00149 295 E----EGIDLPDEVLEFIAKNI----------------TSNVRELEGALNRLIAYASLTGK-PITLELAKEALKDL 349 (450)
T ss_pred H----cCCCCCHHHHHHHHcCc----------------CCCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHh
Confidence 1 12357888888776543 34789999988888888887765 58999888888754
No 193
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.42 E-value=1.2e-06 Score=100.51 Aligned_cols=188 Identities=19% Similarity=0.216 Sum_probs=107.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC------cEEeccCCCCCcccceeeeecccccce-eeccceEeeccCceeeecCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL------AISTTGRGSSGVGLTAAVTSDQETGER-RLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~------~~~~~g~~~~~~glt~~~~~~~~~g~~-~~~~G~l~la~~gil~IDEid 403 (748)
.++|+|++|+|||+|++++++.+.. .+|++.. .+..........+.. .+. -.+.+-.+|+||||+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae-----ef~~el~~al~~~~~~~f~---~~y~~~DLLlIDDIq 387 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE-----EFTNEFINSIRDGKGDSFR---RRYREMDILLVDDIQ 387 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-----HHHHHHHHHHHhccHHHHH---HHhhcCCEEEEehhc
Confidence 4999999999999999999987532 1233221 111000000000100 000 011234699999999
Q ss_pred cCChh--hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCC
Q 004502 404 KMNDQ--DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQ 479 (748)
Q Consensus 404 k~~~~--~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~ 479 (748)
.+... .+..|+..++... ..+..||.|+|-....+. .+.+.|.|||. +++.+ ..
T Consensus 388 ~l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL~---------~l~~rL~SRf~~GLvv~I-~~ 445 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQLV---------TLEDRLRNRFEWGLITDV-QP 445 (617)
T ss_pred cccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhhh---------hccHHHHhhhhcCceEEc-CC
Confidence 88543 3566777776432 112345566765443321 37889999995 45555 55
Q ss_pred CChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHH
Q 004502 480 MDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIH 559 (748)
Q Consensus 480 ~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~ 559 (748)
|+.+....|... ..
T Consensus 446 PD~EtR~aIL~k-----------------------------------------------------------------ka- 459 (617)
T PRK14086 446 PELETRIAILRK-----------------------------------------------------------------KA- 459 (617)
T ss_pred CCHHHHHHHHHH-----------------------------------------------------------------HH-
Confidence 665544333222 11
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 560 YAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 560 ~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
+. -...+++++.++|...+ .-+.|.|+.++.--.+.|.+.. ..|+.+.++++++-
T Consensus 460 --~~-r~l~l~~eVi~yLa~r~----------------~rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~ 514 (617)
T PRK14086 460 --VQ-EQLNAPPEVLEFIASRI----------------SRNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRD 514 (617)
T ss_pred --Hh-cCCCCCHHHHHHHHHhc----------------cCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 10 12357788887777644 2357888887666666777655 45787777777653
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.1e-06 Score=98.87 Aligned_cols=142 Identities=20% Similarity=0.284 Sum_probs=90.2
Q ss_pred cccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCC--------
Q 004502 293 SLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGS-------- 364 (748)
Q Consensus 293 si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~-------- 364 (748)
..+++++|++.+.+.|--++..+- . .| --|+.||-|||||+++|.+|+.+.-.-..++...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r---i---~h-----AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR---I---AH-----AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc---c---hh-----hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 455678999999999999988661 1 12 4789999999999999999998764211111100
Q ss_pred ----CCcccceeeeecc--ccc--c-eee--ccce-EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEE
Q 004502 365 ----SGVGLTAAVTSDQ--ETG--E-RRL--EAGA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 365 ----~~~glt~~~~~~~--~~g--~-~~~--~~G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
+..+++- -|. .+| + ..+ +... -+.+...|.+|||.++++....++|+.-+|+--
T Consensus 82 I~~g~~~DviE---iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP----------- 147 (515)
T COG2812 82 INEGSLIDVIE---IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP----------- 147 (515)
T ss_pred hhcCCcccchh---hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-----------
Confidence 0111110 010 011 0 000 0000 122344699999999999999999999888532
Q ss_pred eccc-eeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 433 LNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 433 l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
.. ..|+||++|. .+|..++||+ ..|.+
T Consensus 148 --~hV~FIlATTe~~--------------Kip~TIlSRc-q~f~f 175 (515)
T COG2812 148 --SHVKFILATTEPQ--------------KIPNTILSRC-QRFDF 175 (515)
T ss_pred --cCeEEEEecCCcC--------------cCchhhhhcc-ccccc
Confidence 22 3577888775 5999999998 44444
No 195
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8.3e-07 Score=104.90 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=101.0
Q ss_pred HHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccc-cCcccEEEECCCCccHHHHHHHHHHhCCCcE---Eecc
Q 004502 286 TFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHL-RGDINMMMVGDPSVAKSQLLRAIMNIAPLAI---STTG 361 (748)
Q Consensus 286 ~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~-rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~---~~~g 361 (748)
.+..|.+.+...|+||+++-.||.-++.... .|..- .+++-+||.||.|+|||.|++++|..+-.+. ...+
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr-----~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD 626 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSR-----AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD 626 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhh-----cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec
Confidence 4567788888999999999999998887541 11111 3567899999999999999999999876521 1111
Q ss_pred CC---------CCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEE
Q 004502 362 RG---------SSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 362 ~~---------~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
.. .+..|+.+.. ..|. -.+++-.....|+++|||+++++++++.|+++|+.|.++=. .|....
T Consensus 627 mse~~evskligsp~gyvG~e----~gg~---LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd 698 (898)
T KOG1051|consen 627 MSEFQEVSKLIGSPPGYVGKE----EGGQ---LTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDS-HGREVD 698 (898)
T ss_pred hhhhhhhhhccCCCcccccch----hHHH---HHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccC-CCcEee
Confidence 11 1111111111 1110 12233334557999999999999999999999999998743 355555
Q ss_pred eccceeEeeecCCC
Q 004502 433 LNARCSVVAAANPI 446 (748)
Q Consensus 433 l~~~~~iiaa~Np~ 446 (748)
+. ++.||.|+|-.
T Consensus 699 ~k-N~I~IMTsn~~ 711 (898)
T KOG1051|consen 699 FK-NAIFIMTSNVG 711 (898)
T ss_pred cc-ceEEEEecccc
Confidence 54 78999999974
No 196
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1e-06 Score=91.28 Aligned_cols=128 Identities=21% Similarity=0.297 Sum_probs=75.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEe----------eccCc---ee
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMV----------LADRG---VV 397 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~----------la~~g---il 397 (748)
-|||.||||||||.|.+++|+-+. +.+.++..-+ ....+.....-..|.-+.|.++ ..+.| .+
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLS--IR~~~~y~~~--~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLS--IRTNDRYYKG--QLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhhe--eeecCccccc--eEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 599999999999999999998763 3333322111 1111110001112222333321 11222 46
Q ss_pred eecCCCcCCh---------------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCC
Q 004502 398 CIDEFDKMND---------------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGL 462 (748)
Q Consensus 398 ~IDEidk~~~---------------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l 462 (748)
+|||.+.+.. .+.++|+.-|++= +-..++.++||+|-.. .+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-----------K~~~NvliL~TSNl~~-------------si 310 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-----------KRYPNVLILATSNLTD-------------SI 310 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-----------ccCCCEEEEeccchHH-------------HH
Confidence 7999986532 1235555555531 1234799999999865 58
Q ss_pred ChhhhccccEEEEecCCCChhHhHH
Q 004502 463 PDSLLSRFDLLFIVLDQMDPDIDRR 487 (748)
Q Consensus 463 ~~~LlsRFdli~~~~d~~~~~~d~~ 487 (748)
+.||.||-|+++.+ .+|..+....
T Consensus 311 D~AfVDRADi~~yV-G~Pt~~ai~~ 334 (423)
T KOG0744|consen 311 DVAFVDRADIVFYV-GPPTAEAIYE 334 (423)
T ss_pred HHHhhhHhhheeec-CCccHHHHHH
Confidence 99999999999999 5565554333
No 197
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6e-07 Score=97.52 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=83.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh---
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND--- 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~--- 407 (748)
.=||+||||||||++.-++|+.+.-.+|--.. +.+.. +.+ +..=.+...++.|++|.+||..-.
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL--t~v~~---------n~d--Lr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL--TEVKL---------DSD--LRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEeee--ccccC---------cHH--HHHHHHhCCCCcEEEEeeccccccccc
Confidence 38999999999999999999999877764321 11111 111 222223344678999999986511
Q ss_pred ---------------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cc
Q 004502 408 ---------------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RF 470 (748)
Q Consensus 408 ---------------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RF 470 (748)
-.+..|+.+++ |....--..-.|+.|+|-.+ .|+|||++ |.
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiD---------GlwSscg~ERIivFTTNh~E-------------kLDPALlRpGRm 361 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLD---------GLWSSCGDERIIVFTTNHKE-------------KLDPALLRPGRM 361 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhc---------cccccCCCceEEEEecCChh-------------hcCHhhcCCCcc
Confidence 12233444443 22221111335777888776 69999999 99
Q ss_pred cEEEEecCCCChhHhHHHHHHHHH
Q 004502 471 DLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 471 dli~~~~d~~~~~~d~~ia~~il~ 494 (748)
|+.+.+ .....+.-+.+|...|.
T Consensus 362 DmhI~m-gyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 362 DMHIYM-GYCTFEAFKTLASNYLG 384 (457)
T ss_pred eeEEEc-CCCCHHHHHHHHHHhcC
Confidence 999999 66777777777776655
No 198
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.39 E-value=2.7e-07 Score=91.36 Aligned_cols=136 Identities=17% Similarity=0.219 Sum_probs=85.9
Q ss_pred cccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCccccee
Q 004502 293 SLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAA 372 (748)
Q Consensus 293 si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~ 372 (748)
+...+|+|.++.-.-+-+..-.|+ ++ |+++.||||||||+-+..+|+.+-..-|-.|. ..|.|+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gn-------mP-----~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v----LELNAS 87 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGN-------MP-----NLIISGPPGTGKTTSILCLARELLGDSYKEAV----LELNAS 87 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCC-------CC-----ceEeeCCCCCchhhHHHHHHHHHhChhhhhHh----hhccCc
Confidence 445579999998777666665552 23 89999999999999999988765432222111 112221
Q ss_pred e------eecccccceeeccceEee--ccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecC
Q 004502 373 V------TSDQETGERRLEAGAMVL--ADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAAN 444 (748)
Q Consensus 373 ~------~~~~~~g~~~~~~G~l~l--a~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~N 444 (748)
- ++... ..+.-..+.+ ....|+++||.|.|....|.+|...||-- ...+++..|+|
T Consensus 88 deRGIDvVRn~I---K~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-------------S~ttRFalaCN 151 (333)
T KOG0991|consen 88 DERGIDVVRNKI---KMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-------------SNTTRFALACN 151 (333)
T ss_pred cccccHHHHHHH---HHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-------------cccchhhhhhc
Confidence 1 11100 0000111122 12359999999999999999999999822 12355666778
Q ss_pred CCCCccCCCCCccccCCCChhhhccccEE
Q 004502 445 PIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 445 p~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
... .+-+|+-||+.+.
T Consensus 152 ~s~-------------KIiEPIQSRCAiL 167 (333)
T KOG0991|consen 152 QSE-------------KIIEPIQSRCAIL 167 (333)
T ss_pred chh-------------hhhhhHHhhhHhh
Confidence 754 4778899998653
No 199
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.6e-06 Score=85.16 Aligned_cols=133 Identities=23% Similarity=0.368 Sum_probs=83.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE-EeccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI-STTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~-~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~ 406 (748)
.+||+||||||||.|+++++....-.+ .++| ..|.-... ..|. ......++.| ...|+|.||||.+.
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsg-----selvqk~i---gegs-rmvrelfvmarehapsiifmdeidsig 253 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG-----SELVQKYI---GEGS-RMVRELFVMAREHAPSIIFMDEIDSIG 253 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEech-----HHHHHHHh---hhhH-HHHHHHHHHHHhcCCceEeeecccccc
Confidence 599999999999999999998654322 2222 12211110 0111 1111223334 25799999999863
Q ss_pred -----------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEE
Q 004502 407 -----------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLL 473 (748)
Q Consensus 407 -----------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli 473 (748)
.++|..+++.+.|-. |...+ .++-+|.|+|... -|.++||. |.|--
T Consensus 254 s~r~e~~~ggdsevqrtmlellnqld------gfeat--knikvimatnrid-------------ild~allrpgridrk 312 (404)
T KOG0728|consen 254 SSRVESGSGGDSEVQRTMLELLNQLD------GFEAT--KNIKVIMATNRID-------------ILDPALLRPGRIDRK 312 (404)
T ss_pred cccccCCCCccHHHHHHHHHHHHhcc------ccccc--cceEEEEeccccc-------------cccHhhcCCCccccc
Confidence 567888999887531 33233 3578899999864 37888887 88877
Q ss_pred EEecCCCChhHhHHHHHHHHHhhhc
Q 004502 474 FIVLDQMDPDIDRRISDHVLRMHRY 498 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~~~~ 498 (748)
+.+ ++|+++... .||..|..
T Consensus 313 ief-p~p~e~ar~----~ilkihsr 332 (404)
T KOG0728|consen 313 IEF-PPPNEEARL----DILKIHSR 332 (404)
T ss_pred ccC-CCCCHHHHH----HHHHHhhh
Confidence 776 556665433 35566653
No 200
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.36 E-value=7.1e-06 Score=86.48 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004502 567 PELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALN 636 (748)
Q Consensus 567 P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~ 636 (748)
+.+++++.+.|.+.. .-.+|.+..+...+...|..+..+.|+.++|..|+.-++
T Consensus 214 ~~~~~~~~~~i~~~s----------------~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 214 PVFSEGAFDAIHRFS----------------RGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred CCcCHHHHHHHHHHc----------------CCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 457888888776643 224788999999999999999999999999999997543
No 201
>PRK05642 DNA replication initiation factor; Validated
Probab=98.34 E-value=5.2e-06 Score=85.77 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=62.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC----CcEEeccCCCCCcccceeeeecccccceeeccceE-eeccCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP----LAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAM-VLADRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~----~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l-~la~~gil~IDEidk~ 405 (748)
+++|+|++|+|||+|++++++.+. +.+|++.. .+.. .. +..+ .+.+..+++||+++..
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~-----~~~~-------~~-----~~~~~~~~~~d~LiiDDi~~~ 109 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA-----ELLD-------RG-----PELLDNLEQYELVCLDDLDVI 109 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH-----HHHh-------hh-----HHHHHhhhhCCEEEEechhhh
Confidence 689999999999999999986532 12232210 0110 00 0000 0112358999999977
Q ss_pred C--hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc--EEEEecCCCC
Q 004502 406 N--DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD--LLFIVLDQMD 481 (748)
Q Consensus 406 ~--~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd--li~~~~d~~~ 481 (748)
. +..+..|+..++.-. ..+..+|.|+|-.+..+. ...+.|.|||- +++.+ .+++
T Consensus 110 ~~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l~---------~~~~~L~SRl~~gl~~~l-~~~~ 167 (234)
T PRK05642 110 AGKADWEEALFHLFNRLR------------DSGRRLLLAASKSPRELP---------IKLPDLKSRLTLALVFQM-RGLS 167 (234)
T ss_pred cCChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHcC---------ccCccHHHHHhcCeeeec-CCCC
Confidence 5 344566777775321 112234444443322221 24688999994 56665 4444
Q ss_pred hh
Q 004502 482 PD 483 (748)
Q Consensus 482 ~~ 483 (748)
.+
T Consensus 168 ~e 169 (234)
T PRK05642 168 DE 169 (234)
T ss_pred HH
Confidence 43
No 202
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.7e-06 Score=97.71 Aligned_cols=164 Identities=21% Similarity=0.189 Sum_probs=96.4
Q ss_pred cccChHHHHHHHHHHHhCCcccccC--CCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeee
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLK--NGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVT 374 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~--~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~ 374 (748)
+|-|..++|.++.-.+-..+ |.+. ...++|-.-+|||+||||||||.|+.+++..++-.+.. -++ ..|.....
T Consensus 668 digg~~~~k~~l~~~i~~P~-kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis-vKG---PElL~KyI 742 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPS-KYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS-VKG---PELLSKYI 742 (952)
T ss_pred ecccHHHHHHHHHHHHhccc-cchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE-ecC---HHHHHHHh
Confidence 47788889988877665431 1111 11233444489999999999999999999988764322 111 11211111
Q ss_pred ecccccce-eeccceEeeccCceeeecCCCcCCh-----------hhHHHHHHHHhhceEEeeccceeEEeccceeEeee
Q 004502 375 SDQETGER-RLEAGAMVLADRGVVCIDEFDKMND-----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAA 442 (748)
Q Consensus 375 ~~~~~g~~-~~~~G~l~la~~gil~IDEidk~~~-----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa 442 (748)
...+.+-+ .++ .--.|...|+|+||||.+.| .+.+.|+.-|+.-. .+. .+.|+||
T Consensus 743 GaSEq~vR~lF~--rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E----------gl~-GV~i~aa 809 (952)
T KOG0735|consen 743 GASEQNVRDLFE--RAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE----------GLD-GVYILAA 809 (952)
T ss_pred cccHHHHHHHHH--HhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc----------ccc-eEEEEEe
Confidence 10001100 000 01124578999999998865 34566777665211 122 3456665
Q ss_pred cCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHHHHHH
Q 004502 443 ANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRISDHV 492 (748)
Q Consensus 443 ~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ia~~i 492 (748)
+.... -+++|||+ |+|-.+.. +.|++.++-.|...+
T Consensus 810 TsRpd-------------liDpALLRpGRlD~~v~C-~~P~~~eRl~il~~l 847 (952)
T KOG0735|consen 810 TSRPD-------------LIDPALLRPGRLDKLVYC-PLPDEPERLEILQVL 847 (952)
T ss_pred cCCcc-------------ccCHhhcCCCccceeeeC-CCCCcHHHHHHHHHH
Confidence 54332 38999998 99988887 777777666655443
No 203
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.30 E-value=5.8e-07 Score=84.94 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=70.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
+|||+|+|||||+.+|++++....+..... ...... ... ...+..+.+|+++|+|++.++++.|
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~----~~~~~~------~~~------~~~l~~a~~gtL~l~~i~~L~~~~Q 86 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPF----IVIDCA------SLP------AELLEQAKGGTLYLKNIDRLSPEAQ 86 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-C----CCCCHH------CTC------HHHHHHCTTSEEEEECGCCS-HHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCe----EEechh------hCc------HHHHHHcCCCEEEECChHHCCHHHH
Confidence 899999999999999999999876521000 000000 000 1122235899999999999999999
Q ss_pred HHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 411 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 411 ~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
..|.++++... ..++.+|+++...... ..++-.+.+.|+.||.-.
T Consensus 87 ~~L~~~l~~~~------------~~~~RlI~ss~~~l~~------l~~~~~~~~~L~~~l~~~ 131 (138)
T PF14532_consen 87 RRLLDLLKRQE------------RSNVRLIASSSQDLEE------LVEEGRFSPDLYYRLSQL 131 (138)
T ss_dssp HHHHHHHHHCT------------TTTSEEEEEECC-CCC------HHHHSTHHHHHHHHCSTC
T ss_pred HHHHHHHHhcC------------CCCeEEEEEeCCCHHH------HhhccchhHHHHHHhCCC
Confidence 99999998631 3456788887764321 122335778888888743
No 204
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.30 E-value=3.7e-07 Score=93.01 Aligned_cols=138 Identities=18% Similarity=0.300 Sum_probs=91.6
Q ss_pred cCcccEEEECCCCccHHHHHHHHHHh-------CCCcEEecc---CCCCCc-ccceeeeecccccceeeccceEeeccCc
Q 004502 327 RGDINMMMVGDPSVAKSQLLRAIMNI-------APLAISTTG---RGSSGV-GLTAAVTSDQETGERRLEAGAMVLADRG 395 (748)
Q Consensus 327 rg~i~iLL~G~pGtGKS~l~r~i~~~-------~~~~~~~~g---~~~~~~-glt~~~~~~~~~g~~~~~~G~l~la~~g 395 (748)
|+..++||.||+|.|||.|++.+..+ .++-+.++- .+.++. .|. ..++...+|...-..|.+-.|+||
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalf-ghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALF-GHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHH-hhhccccccchhhhhhhhccCCCc
Confidence 34448999999999999999998654 333232211 111111 111 123334567666788999999999
Q ss_pred eeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 396 VVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 396 il~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
.+|+||+..+..+.|..|+.++|+..+.-. |......++|.+||-+-.....+ +. .-.+...|+-|..|.
T Consensus 285 mlfldeigelgadeqamllkaieekrf~pf--gsdr~v~sdfqliagtvrdlrq~-----va-eg~fredl~arinlw 354 (531)
T COG4650 285 MLFLDEIGELGADEQAMLLKAIEEKRFYPF--GSDRQVSSDFQLIAGTVRDLRQL-----VA-EGKFREDLYARINLW 354 (531)
T ss_pred eEehHhhhhcCccHHHHHHHHHHhhccCCC--CCccccccchHHhhhhHHHHHHH-----Hh-ccchHHHHHHhhhee
Confidence 999999999999999999999998876433 55566677888888765431110 00 012556677777664
No 205
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=2.9e-06 Score=95.64 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004502 568 ELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 568 ~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
.+++++.++|.+.. .-+.|.|+.++.--.+.|.+..+ .+|...+.+++.-
T Consensus 282 ~l~~ev~~~Ia~~~----------------~~~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~ 331 (440)
T PRK14088 282 ELPEEVLNFVAENV----------------DDNLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKD 331 (440)
T ss_pred CCCHHHHHHHHhcc----------------ccCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 46777777776543 33678888877766777777664 5787777777763
No 206
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.24 E-value=4.1e-05 Score=81.96 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=41.5
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLL 473 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli 473 (748)
.||+||||.+.++-+.-..|..+||... ...||.|+|..-..- +......-..+|..||||+ |+
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~i-rGt~~~sphGiP~DlLDRl-lI 342 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKI-RGTDIISPHGIPLDLLDRL-LI 342 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE--BTTS-EEETT--HHHHTTE-EE
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeec-cCccCcCCCCCCcchHhhc-EE
Confidence 4799999999999999999999999642 134566667531100 0000111136999999999 77
Q ss_pred EEe
Q 004502 474 FIV 476 (748)
Q Consensus 474 ~~~ 476 (748)
+.+
T Consensus 343 I~t 345 (398)
T PF06068_consen 343 IRT 345 (398)
T ss_dssp EEE
T ss_pred EEC
Confidence 776
No 207
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.22 E-value=2.3e-05 Score=79.86 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=92.1
Q ss_pred cccChHHHHHHHHHH---HhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC-cEEeccCCCCCccccee
Q 004502 297 SIYGHSWIKKAVILL---MLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL-AISTTGRGSSGVGLTAA 372 (748)
Q Consensus 297 ~i~G~~~~K~aill~---l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~-~~~~~g~~~~~~glt~~ 372 (748)
.++|.+.-|+.+.-. .+.|-+ .. |+||+|+.|||||.+++++...... +..+..
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~p------an-----nvLL~G~rGtGKSSlVkall~~y~~~GLRlIe----------- 85 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLP------AN-----NVLLWGARGTGKSSLVKALLNEYADQGLRLIE----------- 85 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCC------Cc-----ceEEecCCCCCHHHHHHHHHHHHhhcCceEEE-----------
Confidence 356777777666533 333311 12 9999999999999999999876533 211100
Q ss_pred eeecccccceeeccceE----eeccCceeeecCCCc-CChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCC-
Q 004502 373 VTSDQETGERRLEAGAM----VLADRGVVCIDEFDK-MNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPI- 446 (748)
Q Consensus 373 ~~~~~~~g~~~~~~G~l----~la~~gil~IDEidk-~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~- 446 (748)
+.++... .-|..+ -....-|+|+|++.- ..+..-..|..+|| |.....|.++.|.||+|..
T Consensus 86 v~k~~L~----~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 86 VSKEDLG----DLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE---------GGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ECHHHhc----cHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc---------CccccCCCcEEEEEecchhh
Confidence 0000000 000000 011244899999753 23334566777776 4445668999999999974
Q ss_pred --CCccCCCCC-------ccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 447 --YGTYDRSLT-------PTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 447 --~g~~~~~~~-------~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
...+..... ..+.++=.-+|-+||.|.+.+ .+++.+.=..|..|.+.
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F-~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSF-YPPDQEEYLAIVRHYAE 208 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEe-cCCCHHHHHHHHHHHHH
Confidence 222222111 222222233688999999998 55666655566666654
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.20 E-value=1.6e-06 Score=80.39 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=69.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc---E-EeccCCCCCcccce----eeeecc--cccceeeccceEeecc---Ccee
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA---I-STTGRGSSGVGLTA----AVTSDQ--ETGERRLEAGAMVLAD---RGVV 397 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~---~-~~~g~~~~~~glt~----~~~~~~--~~g~~~~~~G~l~la~---~gil 397 (748)
+++|+||||||||++++.++..+... + +++........... ....+. ..+....+ ..+..+. ..++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi 82 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKLKPDVL 82 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhcCCCEE
Confidence 89999999999999999999988774 2 22221111000000 000000 00100111 2222232 2899
Q ss_pred eecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 398 CIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 398 ~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+|||++.+.......+...... ..............+|+++|+ ... ..+..+..|++..+.+
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~-~~~-----------~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND-EKD-----------LGPALLRRRFDRRIVL 144 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC-Ccc-----------CchhhhhhccceEEEe
Confidence 9999999988776554433111 000001122346889999996 111 3566667788877765
No 209
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.19 E-value=6.2e-06 Score=84.26 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=66.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC----C--cEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP----L--AISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~----~--~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk 404 (748)
.++|+|++|+|||+|++++++.+. . .+|++.. .+..........+.+ ..-.-.+..-.++|||+++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~-----~f~~~~~~~~~~~~~--~~~~~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE-----EFIREFADALRDGEI--EEFKDRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH-----HHHHHHHHHHHTTSH--HHHHHHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH-----HHHHHHHHHHHcccc--hhhhhhhhcCCEEEEecchh
Confidence 599999999999999999987542 1 2233211 110000000001100 00000123456999999999
Q ss_pred CChhh--HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE--EEEecCCC
Q 004502 405 MNDQD--RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL--LFIVLDQM 480 (748)
Q Consensus 405 ~~~~~--~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl--i~~~~d~~ 480 (748)
+.... +..|+..++.-. ...-.+|.|++-.+..+ -.+.+.|.|||.- ++.+ .+|
T Consensus 109 l~~~~~~q~~lf~l~n~~~------------~~~k~li~ts~~~P~~l---------~~~~~~L~SRl~~Gl~~~l-~~p 166 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLI------------ESGKQLILTSDRPPSEL---------SGLLPDLRSRLSWGLVVEL-QPP 166 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHH------------HTTSEEEEEESS-TTTT---------TTS-HHHHHHHHCSEEEEE----
T ss_pred hcCchHHHHHHHHHHHHHH------------hhCCeEEEEeCCCCccc---------cccChhhhhhHhhcchhhc-CCC
Confidence 97754 677777776432 11123444444333322 1378899999975 5555 555
Q ss_pred ChhHhHHH
Q 004502 481 DPDIDRRI 488 (748)
Q Consensus 481 ~~~~d~~i 488 (748)
+.+....+
T Consensus 167 d~~~r~~i 174 (219)
T PF00308_consen 167 DDEDRRRI 174 (219)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 55544333
No 210
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=1.5e-05 Score=87.07 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=88.1
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCc----EEeccCC----C---
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA----ISTTGRG----S--- 364 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~----~~~~g~~----~--- 364 (748)
..++||+.++..+.-++-.| ...| .+||.||+|+||+++++.+++.+... ....+.. .
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g------rl~h-----a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~ 91 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG------KLHH-----ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPV 91 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC------CCCe-----eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHH
Confidence 35899999999999999877 1112 49999999999999999999876431 0000000 0
Q ss_pred -------CCcccceeeee--cccccc--eee--c-----cceEee----ccCceeeecCCCcCChhhHHHHHHHHhhceE
Q 004502 365 -------SGVGLTAAVTS--DQETGE--RRL--E-----AGAMVL----ADRGVVCIDEFDKMNDQDRVAIHEVMEQQTV 422 (748)
Q Consensus 365 -------~~~glt~~~~~--~~~~g~--~~~--~-----~G~l~l----a~~gil~IDEidk~~~~~~~~L~e~me~~~i 422 (748)
+..++.. +.+ +..+|. ..+ + ...+.. ...-|++|||++.|+....++|+..||+-
T Consensus 92 c~~i~~~~hPdl~~-l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-- 168 (351)
T PRK09112 92 WRQIAQGAHPNLLH-ITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-- 168 (351)
T ss_pred HHHHHcCCCCCEEE-eecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC--
Confidence 0011110 100 011110 000 0 001111 12249999999999999999999999853
Q ss_pred EeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhH
Q 004502 423 TIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDI 484 (748)
Q Consensus 423 ~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~ 484 (748)
+.+ ..++.+.+|. .+.+++.||+ ..+.+ .+++.+.
T Consensus 169 -----------p~~~~fiLit~~~~--------------~llptIrSRc-~~i~l-~pl~~~~ 204 (351)
T PRK09112 169 -----------PARALFILISHSSG--------------RLLPTIRSRC-QPISL-KPLDDDE 204 (351)
T ss_pred -----------CCCceEEEEECChh--------------hccHHHHhhc-cEEEe-cCCCHHH
Confidence 122 3344444553 3779999999 56666 4455443
No 211
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=98.11 E-value=0.00012 Score=83.72 Aligned_cols=136 Identities=19% Similarity=0.246 Sum_probs=89.9
Q ss_pred CccHHHHHHHcccCcccChH-HHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 283 RDDTFDLLGNSLAPSIYGHS-WIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 283 ~~~~~~~l~~si~p~i~G~~-~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
.....+.|.+|+.-+--+.+ ..|..++.-|+-=++ .|.|++=.||.|||||.+.+ +++|-++.++|
T Consensus 179 ~dEWid~LlrSiG~eP~~~~~r~K~~~L~RliPlVE----------~N~Nl~ELgPrgTGKS~~y~---eiSp~~~liSG 245 (675)
T TIGR02653 179 SDEWIDVLLRSVGMEPTNLERRTKWHLLTRLIPLVE----------NNYNLCELGPRGTGKSHVYK---ECSPNSILMSG 245 (675)
T ss_pred HHHHHHHHHHhcCCCccccCHHHHHHHHHhhhhhcc----------cccceEEECCCCCCcceeee---ccCCceEEEEC
Confidence 34456778887655544543 466666666664433 44599999999999999977 67788888888
Q ss_pred CCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcC---ChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 362 RGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKM---NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 362 ~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~---~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
...|.+.|.... .++ +.|.+-+- -++++||+..+ +++....|-.+|++|.++.. + ....+.++
T Consensus 246 G~~T~A~LFyn~----~~~----~~GlVg~~--D~VaFDEva~i~f~d~d~v~imK~YM~sG~FsRG--~--~~~~a~as 311 (675)
T TIGR02653 246 GQTTVANLFYNM----STR----QIGLVGMW--DVVAFDEVAGIEFKDKDGVQIMKDYMASGSFARG--K--ESIEGKAS 311 (675)
T ss_pred CccchhHeeEEc----CCC----ceeEEeec--cEEEEeeccccccCCHHHHHHHHHHhhcCccccc--c--ccccccee
Confidence 666655554322 122 45655443 48999999875 34556677888999987643 3 23445666
Q ss_pred EeeecCC
Q 004502 439 VVAAANP 445 (748)
Q Consensus 439 iiaa~Np 445 (748)
++.-.|-
T Consensus 312 ~vfvGNi 318 (675)
T TIGR02653 312 IVFVGNI 318 (675)
T ss_pred EEEEccc
Confidence 6665554
No 212
>PRK04132 replication factor C small subunit; Provisional
Probab=98.11 E-value=1.7e-05 Score=94.61 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=70.4
Q ss_pred ccEEEEC--CCCccHHHHHHHHHHhCCC-----c-EEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecC
Q 004502 330 INMMMVG--DPSVAKSQLLRAIMNIAPL-----A-ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 330 i~iLL~G--~pGtGKS~l~r~i~~~~~~-----~-~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDE 401 (748)
+|-+.-| |++.|||++++++++.+.. . +..++ +...|.. .+++... +.. ....+.-++..|++|||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA--Sd~rgid--~IR~iIk-~~a-~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNA--SDERGIN--VIREKVK-EFA-RTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC--CCcccHH--HHHHHHH-HHH-hcCCcCCCCCEEEEEEC
Confidence 3556778 8999999999999987621 1 11211 1101110 1111000 000 00000001235999999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+|+|+.+.+++|+..||+- +..+.+|.++|+.. .+.++|.||+ .+|.+
T Consensus 639 aD~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~-------------kIi~tIrSRC-~~i~F 686 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRC-AIFRF 686 (846)
T ss_pred cccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChh-------------hCchHHhhhc-eEEeC
Confidence 9999999999999999952 23567888888865 5889999998 55555
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.10 E-value=7.1e-06 Score=88.82 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=81.5
Q ss_pred cccChHHHHHHHHHHHh-CCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEec--------------
Q 004502 297 SIYGHSWIKKAVILLML-GGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAISTT-------------- 360 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~-gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~~-------------- 360 (748)
.++|++.+...+..... .| ..+ | +||.||||+|||+++.++++.+.......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-------~~~-----halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-------RLP-----HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-------CCC-----ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 35666665555555554 33 113 7 99999999999999999998775211000
Q ss_pred -cCCCCCcccceeeeeccc-cccee---eccceEe--eccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEe
Q 004502 361 -GRGSSGVGLTAAVTSDQE-TGERR---LEAGAMV--LADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASL 433 (748)
Q Consensus 361 -g~~~~~~glt~~~~~~~~-~g~~~---~~~G~l~--la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l 433 (748)
|....-..++++..+... .-+.+ .+..... .+..-|++|||+|.|+.+.+++|+..||..
T Consensus 70 ~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep------------- 136 (325)
T COG0470 70 AGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP------------- 136 (325)
T ss_pred hcCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------
Confidence 000000111111110000 00000 0000000 123459999999999999999999999854
Q ss_pred ccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 434 NARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 434 ~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+.++.+|.++|-.. .+.+++.||. .++.+
T Consensus 137 ~~~~~~il~~n~~~-------------~il~tI~SRc-~~i~f 165 (325)
T COG0470 137 PKNTRFILITNDPS-------------KILPTIRSRC-QRIRF 165 (325)
T ss_pred CCCeEEEEEcCChh-------------hccchhhhcc-eeeec
Confidence 34667777777322 4778999999 44444
No 214
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=6.2e-06 Score=83.22 Aligned_cols=133 Identities=22% Similarity=0.325 Sum_probs=76.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE-EeccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI-STTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~-~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~ 406 (748)
.||++||||||||..+|++++....-+ .+.| + .|.-..+ ..|.... ...+..| ...++|+||+|.+.
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvig--s---elvqkyv---gegarmv-relf~martkkaciiffdeidaig 283 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIG--S---ELVQKYV---GEGARMV-RELFEMARTKKACIIFFDEIDAIG 283 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehh--H---HHHHHHh---hhhHHHH-HHHHHHhcccceEEEEeecccccc
Confidence 599999999999999999998654422 1211 0 1110000 0111100 0111122 23589999998653
Q ss_pred -----------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEE
Q 004502 407 -----------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLL 473 (748)
Q Consensus 407 -----------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli 473 (748)
.++|..+++.+.|-. |. .-..++-|+.|+|... .|.++||. |.|--
T Consensus 284 garfddg~ggdnevqrtmleli~qld------gf--dprgnikvlmatnrpd-------------tldpallrpgrldrk 342 (435)
T KOG0729|consen 284 GARFDDGAGGDNEVQRTMLELINQLD------GF--DPRGNIKVLMATNRPD-------------TLDPALLRPGRLDRK 342 (435)
T ss_pred CccccCCCCCcHHHHHHHHHHHHhcc------CC--CCCCCeEEEeecCCCC-------------CcCHhhcCCcccccc
Confidence 467888888887521 11 1123577888888754 48888887 77765
Q ss_pred EEecCCCChhHhHHHHHHHHHhhhc
Q 004502 474 FIVLDQMDPDIDRRISDHVLRMHRY 498 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~~~~ 498 (748)
+.+ ..|+-+- ..||++.|..
T Consensus 343 vef-~lpdleg----rt~i~kihak 362 (435)
T KOG0729|consen 343 VEF-GLPDLEG----RTHIFKIHAK 362 (435)
T ss_pred eec-cCCcccc----cceeEEEecc
Confidence 554 3344332 2356666653
No 215
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=2.2e-05 Score=86.18 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=39.1
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhC
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
..|+||+.+++.+.-++..|- .+ | +||.||+|+||++++.++++.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-------l~-----HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-------LH-----HAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-------CC-----ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999998888761 12 5 9999999999999999998876
No 216
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.8e-06 Score=86.79 Aligned_cols=135 Identities=22% Similarity=0.350 Sum_probs=80.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcCC-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKMN- 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~~- 406 (748)
.|+|+|+||||||.||+++|+.....+.- ..+..|.-.. ...| ..+..-.+-.| ...|+||||||...
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlR----vvGseLiQky---lGdG-pklvRqlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLR----VVGSELIQKY---LGDG-PKLVRELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhh----hhhHHHHHHH---hccc-hHHHHHHHHHHHhcCCceEEeehhhhhcc
Confidence 59999999999999999999854321100 0000111000 0111 01111111122 24699999999764
Q ss_pred ----------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEE
Q 004502 407 ----------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLF 474 (748)
Q Consensus 407 ----------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~ 474 (748)
.++|..+++.++|-. |... ..++-||.|+|... .|.|+|++ |.|--+
T Consensus 293 KRyds~SggerEiQrtmLELLNQld------GFds--rgDvKvimATnrie-------------~LDPaLiRPGrIDrKI 351 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMATNRIE-------------TLDPALIRPGRIDRKI 351 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHhcc------Cccc--cCCeEEEEeccccc-------------ccCHhhcCCCcccccc
Confidence 357888889887621 2111 34678999999986 58899987 888766
Q ss_pred EecCCCChhHhHHHHHHHHHhhhcc
Q 004502 475 IVLDQMDPDIDRRISDHVLRMHRYR 499 (748)
Q Consensus 475 ~~~d~~~~~~d~~ia~~il~~~~~~ 499 (748)
.+ ..||+... .+|+..|..+
T Consensus 352 ef-~~pDe~Tk----kkIf~IHTs~ 371 (440)
T KOG0726|consen 352 EF-PLPDEKTK----KKIFQIHTSR 371 (440)
T ss_pred cc-CCCchhhh----ceeEEEeecc
Confidence 66 55665543 3455666543
No 217
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.98 E-value=3.8e-05 Score=74.69 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcEEec---cCC--------CCCc
Q 004502 300 GHSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAISTT---GRG--------SSGV 367 (748)
Q Consensus 300 G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~~~~---g~~--------~~~~ 367 (748)
||+.+.+.+.-++..+. .+ | +||.||+|+||+++++++++.+--.-... |.- ....
T Consensus 1 gq~~~~~~L~~~~~~~~-------l~-----ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-------LP-----HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcCC-------cc-----eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 78888888877776551 11 4 79999999999999999987653211100 000 0000
Q ss_pred ccceeeeeccccc--ceee---c--cceE----eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc
Q 004502 368 GLTAAVTSDQETG--ERRL---E--AGAM----VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR 436 (748)
Q Consensus 368 glt~~~~~~~~~g--~~~~---~--~G~l----~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~ 436 (748)
++. .. ++... .... + ...+ ..+..-|++|||+++|+.+.+++|+..||+- |.+
T Consensus 69 d~~--~~-~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~ 132 (162)
T PF13177_consen 69 DFI--II-KPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-------------PEN 132 (162)
T ss_dssp TEE--EE-ETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTT
T ss_pred ceE--EE-ecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCC
Confidence 110 00 00000 0000 0 0000 1123459999999999999999999999954 234
Q ss_pred ee-EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 437 CS-VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 437 ~~-iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
+. |+.|.|+. .+.+++.||+ ..+.+
T Consensus 133 ~~fiL~t~~~~--------------~il~TI~SRc-~~i~~ 158 (162)
T PF13177_consen 133 TYFILITNNPS--------------KILPTIRSRC-QVIRF 158 (162)
T ss_dssp EEEEEEES-GG--------------GS-HHHHTTS-EEEEE
T ss_pred EEEEEEECChH--------------HChHHHHhhc-eEEec
Confidence 44 44445553 5999999999 55544
No 218
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=9.1e-06 Score=84.03 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=74.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe--cc-CCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcC--
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST--TG-RGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKM-- 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~--~g-~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~-- 405 (748)
.++|+||||||||.++++++..+.-.+.. ++ ..+..+|-.+-..++... .+... ...|+|+||+|..
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~-----yA~~~---~pciifmdeiDAigG 239 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFR-----YAREV---IPCIIFMDEIDAIGG 239 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHH-----HHhhh---CceEEeehhhhhhcc
Confidence 59999999999999999999988664321 11 111122222222222110 00000 1368999999853
Q ss_pred ---------ChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEE
Q 004502 406 ---------NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLF 474 (748)
Q Consensus 406 ---------~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~ 474 (748)
+..++..|.+.+++-. ......++-+|.|+|... .|.+||+. |.|-.+
T Consensus 240 Rr~se~Ts~dreiqrTLMeLlnqmd--------gfd~l~rVk~ImatNrpd-------------tLdpaLlRpGRldrk~ 298 (388)
T KOG0651|consen 240 RRFSEGTSSDREIQRTLMELLNQMD--------GFDTLHRVKTIMATNRPD-------------TLDPALLRPGRLDRKV 298 (388)
T ss_pred EEeccccchhHHHHHHHHHHHHhhc--------cchhcccccEEEecCCcc-------------ccchhhcCCcccccee
Confidence 3456777777776321 122345788999999754 47888887 777667
Q ss_pred EecCCCChh
Q 004502 475 IVLDQMDPD 483 (748)
Q Consensus 475 ~~~d~~~~~ 483 (748)
.+ +.|++.
T Consensus 299 ~i-Plpne~ 306 (388)
T KOG0651|consen 299 EI-PLPNEQ 306 (388)
T ss_pred cc-CCcchh
Confidence 66 445544
No 219
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.95 E-value=1.1e-05 Score=90.95 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=71.5
Q ss_pred cceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC-CccCCCCCccccCCCCh
Q 004502 386 AGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY-GTYDRSLTPTKNIGLPD 464 (748)
Q Consensus 386 ~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~ 464 (748)
.|+|..|++|++=+=|+-|.+.+.+.-|+.+-+++.+... +....++.+-.|||.+|... ..|-.+ .-..
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~E~~~F~~n-------k~nE 318 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNESEWQTFRNN-------KNNE 318 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHHHHHHHhcC-------ccch
Confidence 4888999988887779999999999889999888886432 33456678899999999863 333211 3568
Q ss_pred hhhccccEEEEecCCCChhHhHHHHHHHHHh
Q 004502 465 SLLSRFDLLFIVLDQMDPDIDRRISDHVLRM 495 (748)
Q Consensus 465 ~LlsRFdli~~~~d~~~~~~d~~ia~~il~~ 495 (748)
||+||+ .++-++-........+|-+.++..
T Consensus 319 A~~DRi-~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 319 AFLDRI-YIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred hhhceE-EEEeCCccCChhHHHHHHHHHhcC
Confidence 999998 445554444444555677666653
No 220
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=6.3e-05 Score=81.32 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=85.9
Q ss_pred CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeee
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTS 375 (748)
Q Consensus 296 p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~ 375 (748)
..|+||+.+++.+.-++..|.- .| -.||+||+|+||+++++.+++.+-... ......++......
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~------~h-----a~Lf~G~~G~Gk~~la~~~a~~l~c~~----~~~~h~D~~~~~~~ 68 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF------SH-----AHIIVGEDGIGKSLLAKEIALKILGKS----QQREYVDIIEFKPI 68 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC------Cc-----eEEeECCCCCCHHHHHHHHHHHHcCCC----CCCCCCCeEEeccc
Confidence 4688999999999888876611 11 348999999999999999998652110 00001111000000
Q ss_pred c--cccccee---ec---cceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCC
Q 004502 376 D--QETGERR---LE---AGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPI 446 (748)
Q Consensus 376 ~--~~~g~~~---~~---~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~ 446 (748)
+ ..+-+.. .+ ... ..++.-|++||++++|+.+..++|+..||+- |.. +.|+.|.||.
T Consensus 69 ~~~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-------------p~~t~~il~~~~~~ 134 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-------------PKGVFIILLCENLE 134 (313)
T ss_pred cCCCCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH
Confidence 0 0000000 00 011 2345569999999999999999999999842 222 3344555553
Q ss_pred CCccCCCCCccccCCCChhhhccccEEEEecCCCChh
Q 004502 447 YGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPD 483 (748)
Q Consensus 447 ~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~ 483 (748)
.+.+++.||.- ++.+ ..++.+
T Consensus 135 --------------~ll~TI~SRc~-~~~~-~~~~~~ 155 (313)
T PRK05564 135 --------------QILDTIKSRCQ-IYKL-NRLSKE 155 (313)
T ss_pred --------------hCcHHHHhhce-eeeC-CCcCHH
Confidence 48899999994 4555 334433
No 221
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.93 E-value=6e-05 Score=75.09 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=69.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCC------------CCCcccceeeeecc-ccc-cee---ec-cceE-ee
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG------------SSGVGLTAAVTSDQ-ETG-ERR---LE-AGAM-VL 391 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~------------~~~~glt~~~~~~~-~~g-~~~---~~-~G~l-~l 391 (748)
.+||.||||+|||++++.+++.+...-...+.. ....++.. +..+. ..+ +.. .. .... ..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHR-LEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEE-eccccCcCCHHHHHHHHHHHccCccc
Confidence 499999999999999999988763210000000 00001100 00000 000 000 00 0000 22
Q ss_pred ccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc
Q 004502 392 ADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 392 a~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
+...|++|||+++|+++.++.|+..||+. +..+.+|.++|... .+.+++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~-------------~l~~~i~sr~~ 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSPE-------------KLLPTIRSRCQ 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH-------------hChHHHHhhcE
Confidence 45569999999999999999999999853 22344444444221 48899999994
Q ss_pred EEEEecCCCChh
Q 004502 472 LLFIVLDQMDPD 483 (748)
Q Consensus 472 li~~~~d~~~~~ 483 (748)
++.+ .+++.+
T Consensus 149 -~~~~-~~~~~~ 158 (188)
T TIGR00678 149 -VLPF-PPLSEE 158 (188)
T ss_pred -EeeC-CCCCHH
Confidence 4555 555544
No 222
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=4.6e-05 Score=82.87 Aligned_cols=136 Identities=11% Similarity=0.123 Sum_probs=81.5
Q ss_pred cccC-hHHHHHHHHHHHhCCcccccCCCccccCccc-EEEECCCCccHHHHHHHHHHhCCCcE----EeccC--------
Q 004502 297 SIYG-HSWIKKAVILLMLGGVEKNLKNGTHLRGDIN-MMMVGDPSVAKSQLLRAIMNIAPLAI----STTGR-------- 362 (748)
Q Consensus 297 ~i~G-~~~~K~aill~l~gg~~~~~~~~~~~rg~i~-iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~-------- 362 (748)
.|+| |+.+.+.+.-++..|. .+ | .||+||+|+||+++++.+++.+--.- ..+|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-------l~-----ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-------LS-----HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-------CC-----ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHh
Confidence 4667 8888887777776551 12 5 49999999999999999988753210 00000
Q ss_pred CCCCcccceeeeeccccccee----------eccceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEE
Q 004502 363 GSSGVGLTAAVTSDQETGERR----------LEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHAS 432 (748)
Q Consensus 363 ~~~~~glt~~~~~~~~~g~~~----------~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~ 432 (748)
..+..++... . +.+.... +.... ..++..|++|||+++|+.+..++|+..||+-
T Consensus 74 ~~~hpD~~~i-~--~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP------------ 137 (329)
T PRK08058 74 SGNHPDVHLV-A--PDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEEP------------ 137 (329)
T ss_pred cCCCCCEEEe-c--cccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcCC------------
Confidence 0001111100 0 0000000 00011 3345679999999999999999999999952
Q ss_pred eccceeEe-eecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 433 LNARCSVV-AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 433 l~~~~~ii-aa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
|..+.+| .|.|+. .+.+++.||+ .++.+
T Consensus 138 -p~~~~~Il~t~~~~--------------~ll~TIrSRc-~~i~~ 166 (329)
T PRK08058 138 -SGGTTAILLTENKH--------------QILPTILSRC-QVVEF 166 (329)
T ss_pred -CCCceEEEEeCChH--------------hCcHHHHhhc-eeeeC
Confidence 2233334 444443 4889999999 55555
No 223
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=6.5e-06 Score=90.27 Aligned_cols=125 Identities=21% Similarity=0.238 Sum_probs=74.2
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCc--EEeccC--CCCCcccceeeee----cccccceeeccceEeeccCceeeecCCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLA--ISTTGR--GSSGVGLTAAVTS----DQETGERRLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~--~~~~g~--~~~~~glt~~~~~----~~~~g~~~~~~G~l~la~~gil~IDEid 403 (748)
|||+||||||||.+||.+-+.+... -.+.|- .+-.+|-+-.-++ |. .-+|.-. |. -+.=+|+++||||
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDA-EeE~r~~-g~--~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADA-EEEQRRL-GA--NSGLHIIIFDEID 334 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhH-HHHHHhh-Cc--cCCceEEEehhhH
Confidence 9999999999999999999988651 122220 0111111111111 11 1122111 11 1112599999999
Q ss_pred cCC-------------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--
Q 004502 404 KMN-------------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS-- 468 (748)
Q Consensus 404 k~~-------------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls-- 468 (748)
... +.+.+.|+.-|+ ....++ ++.||+-+|... -+++|||+
T Consensus 335 AICKqRGS~~g~TGVhD~VVNQLLsKmD----------GVeqLN-NILVIGMTNR~D-------------lIDEALLRPG 390 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDTVVNQLLSKMD----------GVEQLN-NILVIGMTNRKD-------------LIDEALLRPG 390 (744)
T ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhcc----------cHHhhh-cEEEEeccCchh-------------hHHHHhcCCC
Confidence 653 344566666654 222333 688999999864 48899998
Q ss_pred cccEEEEecCCCChhHh
Q 004502 469 RFDLLFIVLDQMDPDID 485 (748)
Q Consensus 469 RFdli~~~~d~~~~~~d 485 (748)
||.+.+.+ ..||+.-.
T Consensus 391 RlEVqmEI-sLPDE~gR 406 (744)
T KOG0741|consen 391 RLEVQMEI-SLPDEKGR 406 (744)
T ss_pred ceEEEEEE-eCCCccCc
Confidence 99988887 55666544
No 224
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.87 E-value=6.1e-05 Score=66.25 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=61.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCcc
Q 004502 545 KRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKIS 624 (748)
Q Consensus 545 ~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~ 624 (748)
.+..++...|++|+ .|++++...|...+.. ..+|.|....++|+|+++|.|.+++.|+
T Consensus 28 ~Na~l~~~~l~~~~---------~l~~~~~~~l~~~~~~-------------~~lS~R~~~rilrvARTIADL~~~~~I~ 85 (96)
T PF13335_consen 28 CNAQLPGEELRKYC---------PLSSEAKKLLEQAAEK-------------LNLSARGYHRILRVARTIADLEGSERIT 85 (96)
T ss_pred ccccCCHHHHHhHc---------CCCHHHHHHHHHHHHH-------------cCcCHHHHHHHHHHHHHHHhHcCCCCCC
Confidence 36778999999998 6899999999998865 5689999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 004502 625 KSDVEAALKA 634 (748)
Q Consensus 625 ~~Dv~~Ai~l 634 (748)
.+|+.+|+.+
T Consensus 86 ~~hi~EAl~y 95 (96)
T PF13335_consen 86 REHIAEALSY 95 (96)
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 225
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00015 Score=78.15 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=87.7
Q ss_pred cCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccC-------CCCCc
Q 004502 295 APSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR-------GSSGV 367 (748)
Q Consensus 295 ~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~-------~~~~~ 367 (748)
+.+|+||+.++..+.-++-.|. -.| ..||.||+|+||+.++.++++.+--.- .+|. ..+..
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~r------l~h-----a~Lf~G~~G~Gk~~~A~~~a~~llc~~-~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNR------IAP-----AYLFAGPEGVGRKLAALCFIEGLLSQG-SPSKNIRRRLEEGNHP 70 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCC------CCc-----eEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCcHhcccccCCCC
Confidence 3478999999999988887661 113 799999999999999999987753210 0000 00011
Q ss_pred ccceee----eec--------cccc-------cee------e-c-cce-EeeccCceeeecCCCcCChhhHHHHHHHHhh
Q 004502 368 GLTAAV----TSD--------QETG-------ERR------L-E-AGA-MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 368 glt~~~----~~~--------~~~g-------~~~------~-~-~G~-l~la~~gil~IDEidk~~~~~~~~L~e~me~ 419 (748)
++.... ... ...| ... + + ... -..+...|++||++++|+....++|+..||+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 111000 000 0000 000 0 0 000 0224567999999999999999999999985
Q ss_pred ceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChh
Q 004502 420 QTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPD 483 (748)
Q Consensus 420 ~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~ 483 (748)
=. ++ ..|+.|.+|. .|.+++.||+ .++.+ .+++.+
T Consensus 151 Pp------------~~-~fILi~~~~~--------------~Ll~TI~SRc-q~i~f-~~l~~~ 185 (314)
T PRK07399 151 PG------------NG-TLILIAPSPE--------------SLLPTIVSRC-QIIPF-YRLSDE 185 (314)
T ss_pred CC------------CC-eEEEEECChH--------------hCcHHHHhhc-eEEec-CCCCHH
Confidence 21 11 2344445553 5999999999 44454 344433
No 226
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=9.4e-05 Score=83.84 Aligned_cols=133 Identities=21% Similarity=0.234 Sum_probs=81.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeec---cceEeeccCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLE---AGAMVLADRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~---~G~l~la~~gil~IDEidk~~~ 407 (748)
.+|++||||+|||.+++++++.....++.... ..+...... ..+..++ .-+...+-..+++|||+|.+.+
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~----peli~k~~g---Ete~~LR~~f~~a~k~~~psii~IdEld~l~p 292 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYGAFLFLING----PELISKFPG---ETESNLRKAFAEALKFQVPSIIFIDELDALCP 292 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhCceeEeccc----HHHHHhccc---chHHHHHHHHHHHhccCCCeeEeHHhHhhhCC
Confidence 69999999999999999999987643322210 001100000 0011110 0111112267999999998875
Q ss_pred ----------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc-cccEEEEe
Q 004502 408 ----------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS-RFDLLFIV 476 (748)
Q Consensus 408 ----------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls-RFdli~~~ 476 (748)
.....|+..|+.-. -..+..+|+|+|... .|.+++-+ |||--+.+
T Consensus 293 ~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~-------------sld~alRRgRfd~ev~I 348 (693)
T KOG0730|consen 293 KREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPD-------------SLDPALRRGRFDREVEI 348 (693)
T ss_pred cccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCcc-------------ccChhhhcCCCcceeee
Confidence 33456777776321 124577888888764 48888886 99987777
Q ss_pred cCCCChhHhHHHHHHHHHh
Q 004502 477 LDQMDPDIDRRISDHVLRM 495 (748)
Q Consensus 477 ~d~~~~~~d~~ia~~il~~ 495 (748)
..|+......|.++....
T Consensus 349 -giP~~~~RldIl~~l~k~ 366 (693)
T KOG0730|consen 349 -GIPGSDGRLDILRVLTKK 366 (693)
T ss_pred -cCCCchhHHHHHHHHHHh
Confidence 667766666776666553
No 227
>PRK12377 putative replication protein; Provisional
Probab=97.74 E-value=9.9e-06 Score=83.99 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=66.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc---E-EeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCC--Cc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA---I-STTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEF--DK 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~---~-~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEi--dk 404 (748)
+++|+|+||||||+|+.++++.+... + +++ ...+...+......++ ....-.-.+..-.+|+|||+ ..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----~~~l~~~l~~~~~~~~-~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----VPDVMSRLHESYDNGQ-SGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----HHHHHHHHHHHHhccc-hHHHHHHHhcCCCEEEEcCCCCCC
Confidence 79999999999999999999877431 1 111 0111111100000110 00000011345579999999 55
Q ss_pred CChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc
Q 004502 405 MNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 405 ~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
.++..+..|+++++.+. ..+..+|.|+|-....+.. .+..+++||.
T Consensus 177 ~s~~~~~~l~~ii~~R~------------~~~~ptiitSNl~~~~l~~--------~~~~ri~dRl 222 (248)
T PRK12377 177 ETKNEQVVLNQIIDRRT------------ASMRSVGMLTNLNHEAMST--------LLGERVMDRM 222 (248)
T ss_pred CCHHHHHHHHHHHHHHH------------hcCCCEEEEcCCCHHHHHH--------HhhHHHHHHH
Confidence 56777889999998664 1234567778876544321 2566777776
No 228
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.71 E-value=0.00021 Score=86.23 Aligned_cols=209 Identities=16% Similarity=0.119 Sum_probs=119.1
Q ss_pred cEEEECCCCccHHHHHHHHH-Hh-CCCcEEeccCCCCCc--ccce---eeeecccccceeeccceEeeccCceeeecCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIM-NI-APLAISTTGRGSSGV--GLTA---AVTSDQETGERRLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~-~~-~~~~~~~~g~~~~~~--glt~---~~~~~~~~g~~~~~~G~l~la~~gil~IDEid 403 (748)
.++++||||+|||+|.--.. .. .-.-++..-..++.. -+.+ .+..-+.+|...+-|...+ ..+|+|.|||+
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v--K~lVLFcDeIn 1573 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVV--KDLVLFCDEIN 1573 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcch--hheEEEeeccC
Confidence 48999999999999753221 11 111112111111110 0100 0111112333333333222 46899999998
Q ss_pred c------CChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCC--CCccCCCCCccccCCCChhhhccccEEEE
Q 004502 404 K------MNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPI--YGTYDRSLTPTKNIGLPDSLLSRFDLLFI 475 (748)
Q Consensus 404 k------~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~--~g~~~~~~~~~~ni~l~~~LlsRFdli~~ 475 (748)
. .++++...|.+.||.|-++-.-+....++ ++..+.+|+||. .|+- +.+..++.|=-++|.
T Consensus 1574 Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~gRv----------~~~eRf~r~~v~vf~ 1642 (3164)
T COG5245 1574 LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDEGRV----------KYYERFIRKPVFVFC 1642 (3164)
T ss_pred CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCcccC----------ccHHHHhcCceEEEe
Confidence 2 24566777888999876654333333333 478899999996 3543 678888888755555
Q ss_pred ecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHH
Q 004502 476 VLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLK 555 (748)
Q Consensus 476 ~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lr 555 (748)
+.|+......|.+.++.... +-.+..+
T Consensus 1643 --~ype~~SL~~Iyea~l~~s~---------------------------------------------------l~~~ef~ 1669 (3164)
T COG5245 1643 --CYPELASLRNIYEAVLMGSY---------------------------------------------------LCFDEFN 1669 (3164)
T ss_pred --cCcchhhHHHHHHHHHHHHH---------------------------------------------------HhhHHHH
Confidence 57777766777665444110 0011222
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhc
Q 004502 556 KYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMK 618 (748)
Q Consensus 556 kyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~ 618 (748)
. ++++....=+++|...|...... ...++..+||.|.+++|--...|--+
T Consensus 1670 ~------------~se~~~~aSv~ly~~~k~~~k~~-lq~~y~y~pReLtR~lr~i~~yaeT~ 1719 (3164)
T COG5245 1670 R------------LSEETMSASVELYLSSKDKTKFF-LQMNYGYKPRELTRSLRAIFGYAETR 1719 (3164)
T ss_pred H------------HHHHHHHHHHHHHHHHHHhhhhh-cccccccChHHHHHHHHHHHhHHhcC
Confidence 2 34555566677888887654322 12347889999999998877666543
No 229
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=97.68 E-value=0.007 Score=65.11 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=184.0
Q ss_pred EEeeeecccccccCCCCEEEEEEEEeecCCC-CCCcccceeEEEEEEeccccccccCCCCCCCHHHHHHHHHHhcCccHH
Q 004502 209 VDVIVEDDLVDSCKPGDRVAIVGTYKALPGK-SKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTF 287 (748)
Q Consensus 209 i~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~~-~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 287 (748)
-.|.++++.--+++..|.|.+.||+...|.- .-......-...+.+.+++..... + ...++-++ ++++ ++
T Consensus 201 ClVKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~ld~~~~ae~qa~hvq~lqh~--n-Pllp~ilr--~el~--~~-- 271 (543)
T KOG2545|consen 201 CLVKVYEGMETKVQVNDAVDFIGILSVDPELASLDGLDCLHMAEFQAYHVQALQHP--N-PLLPEILR--KELR--PK-- 271 (543)
T ss_pred eEEEEecCcccceehhhhhhhheeeecChhhhcCCCcccccHHHHHHHHHhccCCC--C-ccchHHHH--HHhh--HH--
Confidence 3467778876679999999999999776532 000000000001122233222110 1 12222221 2222 22
Q ss_pred HHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCc--cHHHHHHHHHHhCCCcEEeccCCCC
Q 004502 288 DLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSV--AKSQLLRAIMNIAPLAISTTGRGSS 365 (748)
Q Consensus 288 ~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGt--GKS~l~r~i~~~~~~~~~~~g~~~~ 365 (748)
|...+-.-..|...+-.-+++.|++.+-... ++. .-|...+=|+|=|-- --|+|-+.+..++|..++..-....
T Consensus 272 --Llkylt~~Lg~d~iAAeyLllhLlStV~~R~-d~l-~iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmtie~ 347 (543)
T KOG2545|consen 272 --LLKYLTKVLGNDNIAAEYLLLHLLSTVYHRT-DGL-VIGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTIEE 347 (543)
T ss_pred --HHHHHHHhhcCchHHHHHHHHHHHHHhhccc-cce-EeeeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeHHh
Confidence 2222222223344455667777776543211 111 122233445544433 4567778888888886644211100
Q ss_pred CcccceeeeecccccceeeccceEeeccCceeeecCCCcC-------ChhhHHHHHHHHhhceEEeeccceeEEecccee
Q 004502 366 GVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKM-------NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 366 ~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~-------~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ 438 (748)
-........+| .+...+.+|.+-+|++..++|||=..- .-...+.|-..+++|.+...-.--...+++++.
T Consensus 348 lNta~f~PkkD--yetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~ 425 (543)
T KOG2545|consen 348 LNTAPFYPKKD--YETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVR 425 (543)
T ss_pred hcccCcccccc--ccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCce
Confidence 00000112223 223367899999999999999996432 223456777888899887655455567777777
Q ss_pred EeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGRE 518 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (748)
++-.+- |+- -+|.. +.+.+ ++...+. +.
T Consensus 426 vlIlSe---Grs----------ilPAD------l~i~l-qp~~v~~-----------le--------------------- 453 (543)
T KOG2545|consen 426 VLILSE---GRS----------ILPAD------LGIRL-QPDSVDT-----------LE--------------------- 453 (543)
T ss_pred EEEeeC---Ccc----------cCccc------ccccC-CCCCCCc-----------cc---------------------
Confidence 776653 321 13322 22222 1000000 00
Q ss_pred CccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcc
Q 004502 519 DEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLP 598 (748)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~ 598 (748)
...+-.....|.|+.-+|. ..-.+++|..++|.+-|+.||+....
T Consensus 454 --------------------------~~tps~l~q~rcyltt~r~-l~~nIsee~t~~iq~dfV~mRq~n~~-------- 498 (543)
T KOG2545|consen 454 --------------------------FPTPSDLLQFRCYLTTMRN-LRANISEEMTDYIQSDFVSMRQYNKE-------- 498 (543)
T ss_pred --------------------------cCChhHHHHHHHHHHHHHh-hccCccHHHHHHHHHHHHHHHhhCcc--------
Confidence 0011123457888888885 67789999999999999999987643
Q ss_pred cChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004502 599 ITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALN 636 (748)
Q Consensus 599 ~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~ 636 (748)
.....|-.++-+|+-.++-.++.+++.+|-..|.+|-+
T Consensus 499 snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele~ 536 (543)
T KOG2545|consen 499 SNADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELEN 536 (543)
T ss_pred cchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 34678899999999999999999999999999988754
No 230
>PRK08116 hypothetical protein; Validated
Probab=97.63 E-value=9e-06 Score=85.65 Aligned_cols=99 Identities=14% Similarity=0.226 Sum_probs=57.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---c-EEeccCCCCCcccceeeeeccc-ccceeeccceE-eeccCceeeecCC--
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---A-ISTTGRGSSGVGLTAAVTSDQE-TGERRLEAGAM-VLADRGVVCIDEF-- 402 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~-~~~~g~~~~~~glt~~~~~~~~-~g~~~~~~G~l-~la~~gil~IDEi-- 402 (748)
.++|+|+||||||+|+.++++.+-. . ++++. ..+...+..... .+... ....+ .+.+..+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~-----~~ll~~i~~~~~~~~~~~-~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF-----PQLLNRIKSTYKSSGKED-ENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-----HHHHHHHHHHHhcccccc-HHHHHHHhcCCCEEEEecccC
Confidence 5999999999999999999987532 2 22211 111111100000 00000 00111 1345579999999
Q ss_pred CcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC
Q 004502 403 DKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY 447 (748)
Q Consensus 403 dk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~ 447 (748)
+..++..+..|+++++.+. .....+|.|+|-.+
T Consensus 190 e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~~ 222 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLSL 222 (268)
T ss_pred CCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCCH
Confidence 5667778888999988652 12235778888654
No 231
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.63 E-value=6e-05 Score=80.64 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=72.9
Q ss_pred cceEeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC-CccCCCCCccccCCCCh
Q 004502 386 AGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY-GTYDRSLTPTKNIGLPD 464 (748)
Q Consensus 386 ~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~ 464 (748)
.|.+..|++|++=+=|+-|.+.+.+..|+.+.++|.+... +.....+.+..|||.+|+.. ..|..+ .--+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~~-------~~~e 296 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKNN-------KNNE 296 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhcc-------ccch
Confidence 4888899999998889999999999999999999987664 23344677899999999863 333111 2337
Q ss_pred hhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 465 SLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 465 ~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
||.||+ .++-++-..+.....+|-+.++.
T Consensus 297 Af~DRi-~~I~VPY~L~~s~E~kIY~k~~~ 325 (358)
T PF08298_consen 297 AFKDRI-EVIKVPYCLRVSEEVKIYEKLIG 325 (358)
T ss_pred hhhhhe-EEEeccccCCHHHHHHHHHHHhh
Confidence 999999 44555455555566677776664
No 232
>PRK06526 transposase; Provisional
Probab=97.61 E-value=1.1e-05 Score=84.21 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=56.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-cEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC--h
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-AISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN--D 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~--~ 407 (748)
|++|+||||||||.|+.+++..+-. +..+ ...+...+..........|. +......+..-.+++|||++..+ +
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v--~f~t~~~l~~~l~~~~~~~~--~~~~l~~l~~~dlLIIDD~g~~~~~~ 175 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRV--LFATAAQWVARLAAAHHAGR--LQAELVKLGRYPLLIVDEVGYIPFEP 175 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCch--hhhhHHHHHHHHHHHHhcCc--HHHHHHHhccCCEEEEcccccCCCCH
Confidence 8999999999999999999765432 1100 00000011100000000110 00001112345699999999775 5
Q ss_pred hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCcc
Q 004502 408 QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTY 450 (748)
Q Consensus 408 ~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~ 450 (748)
..+..|+++++...- +.++|.|+|-.++.|
T Consensus 176 ~~~~~L~~li~~r~~-------------~~s~IitSn~~~~~w 205 (254)
T PRK06526 176 EAANLFFQLVSSRYE-------------RASLIVTSNKPFGRW 205 (254)
T ss_pred HHHHHHHHHHHHHHh-------------cCCEEEEcCCCHHHH
Confidence 666778898875420 125777888776555
No 233
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0017 Score=71.60 Aligned_cols=55 Identities=29% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Q 004502 567 PELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFA 638 (748)
Q Consensus 567 P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~~~s 638 (748)
..+++++..+|.... .-+.|+|+..+..--+.|....+ .+|..-|.++++-+..+
T Consensus 262 ~~i~~ev~~~la~~~----------------~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 262 IEIPDEVLEFLAKRL----------------DRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred CCCCHHHHHHHHHHh----------------hccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 357788888777643 23678998888777788888777 88888888888877654
No 234
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.57 E-value=4.3e-05 Score=79.68 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=76.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCccccee------eeecccccceeeccc--eEee-ccCceeeecC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAA------VTSDQETGERRLEAG--AMVL-ADRGVVCIDE 401 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~------~~~~~~~g~~~~~~G--~l~l-a~~gil~IDE 401 (748)
|+|++||||||||....+++..+..+.-++ +-...+.++ +++.... .+..--+ .+.. +.-..+++||
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~---~m~lelnaSd~rgid~vr~qi~-~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTT---SMLLELNASDDRGIDPVRQQIH-LFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCch---hHHHHhhccCccCCcchHHHHH-HHHhhccceeccccCceeEEEecc
Confidence 999999999999998888888776531111 001111111 1111000 0000000 0111 1234899999
Q ss_pred CCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCC
Q 004502 402 FDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMD 481 (748)
Q Consensus 402 idk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~ 481 (748)
.|.|..+.|++|..+.|+-+ +++.+.--+|+.. .+.+++.+|| -.|.. .+.+
T Consensus 140 ADaMT~~AQnALRRviek~t-------------~n~rF~ii~n~~~-------------ki~pa~qsRc-trfrf-~pl~ 191 (360)
T KOG0990|consen 140 ADAMTRDAQNALRRVIEKYT-------------ANTRFATISNPPQ-------------KIHPAQQSRC-TRFRF-APLT 191 (360)
T ss_pred hhHhhHHHHHHHHHHHHHhc-------------cceEEEEeccChh-------------hcCchhhccc-ccCCC-CCCC
Confidence 99999999999998776443 3344444467754 4789999998 33443 3334
Q ss_pred hhHhHHHHHHHHH
Q 004502 482 PDIDRRISDHVLR 494 (748)
Q Consensus 482 ~~~d~~ia~~il~ 494 (748)
...+...-+|+..
T Consensus 192 ~~~~~~r~shi~e 204 (360)
T KOG0990|consen 192 MAQQTERQSHIRE 204 (360)
T ss_pred hhhhhhHHHHHHh
Confidence 4445556666655
No 235
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00022 Score=77.26 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=67.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE----EeccC--------CCCCcccceeeeecccccceee---c--cceE----
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGR--------GSSGVGLTAAVTSDQETGERRL---E--AGAM---- 389 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~--------~~~~~glt~~~~~~~~~g~~~~---~--~G~l---- 389 (748)
.+||.||+|+||+++++.+++.+--.- ..+|. ..+..++.. +..+..+..... + -..+
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFV-LEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE-EeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 488999999999999999998764210 00010 000111110 000000000000 0 0000
Q ss_pred eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhhc
Q 004502 390 VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS 468 (748)
Q Consensus 390 ~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls 468 (748)
..+..-|++||++++|+....++|+..||+- |.+ +.|+.|.||. .+++++.|
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~ll~TI~S 155 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPS--------------RLLPTIKS 155 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChh--------------hCcHHHHh
Confidence 1234569999999999999999999999963 122 3445555554 49999999
Q ss_pred cccEEEEe
Q 004502 469 RFDLLFIV 476 (748)
Q Consensus 469 RFdli~~~ 476 (748)
|+-. +.+
T Consensus 156 Rc~~-~~~ 162 (328)
T PRK05707 156 RCQQ-QAC 162 (328)
T ss_pred hcee-eeC
Confidence 9955 454
No 236
>PRK08181 transposase; Validated
Probab=97.54 E-value=1.9e-05 Score=82.91 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=65.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cE-EeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AI-STTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~-~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~ 406 (748)
|++|+||||||||+|+.+++..+-. .+ +++ ...+..........+. ...-.-.+..-.+++|||+...+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----~~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----HHHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEecccccc
Confidence 7999999999999999999875432 11 211 1111111100000010 00000012344699999998775
Q ss_pred h--hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc
Q 004502 407 D--QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 407 ~--~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
. ..+..|+++++... . +.++|.|+|-.++.|.... ..-.+..+++||.
T Consensus 181 ~~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w~~~~---~D~~~a~aildRL 230 (269)
T PRK08181 181 KDQAETSVLFELISARY------------E-RRSILITANQPFGEWNRVF---PDPAMTLAAVDRL 230 (269)
T ss_pred CCHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHHHHhc---CCccchhhHHHhh
Confidence 4 44567899988542 1 1357788887765553210 1113567788887
No 237
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.53 E-value=5.2e-05 Score=95.32 Aligned_cols=143 Identities=16% Similarity=0.240 Sum_probs=104.2
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcEEecc-CC-CCCcccceeeeecccccceeeccceEeec--cCceeeecCCCcC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAISTTG-RG-SSGVGLTAAVTSDQETGERRLEAGAMVLA--DRGVVCIDEFDKM 405 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g-~~-~~~~glt~~~~~~~~~g~~~~~~G~l~la--~~gil~IDEidk~ 405 (748)
.++||.||.|+|||.++++++...+..+.... .. .....+.++... ..+|+..++-|+++.| +|-.+++||++..
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~-~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVA-DDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhc-CCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 47999999999999999999998877442221 11 111111221111 2367778888999877 6779999999999
Q ss_pred ChhhHHHHHHHHhh-ceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCC
Q 004502 406 NDQDRVAIHEVMEQ-QTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMD 481 (748)
Q Consensus 406 ~~~~~~~L~e~me~-~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~ 481 (748)
+.+++.+|...++. +.+.+...........++.++|+-||.. .|. +.-.+..+|++||.-+... +.+.
T Consensus 520 ~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~-~y~------grk~lsRa~~~rf~e~~f~-~~~e 588 (1856)
T KOG1808|consen 520 PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG-TYG------GRKILSRALRNRFIELHFD-DIGE 588 (1856)
T ss_pred chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc-ccc------hhhhhhhcccccchhhhhh-hcCc
Confidence 99999999999988 8888887666777777899999999972 231 2226889999999655444 4443
No 238
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.52 E-value=0.00043 Score=69.60 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=93.8
Q ss_pred cccChHHHHHHHHH---HHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceee
Q 004502 297 SIYGHSWIKKAVIL---LMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAV 373 (748)
Q Consensus 297 ~i~G~~~~K~aill---~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~ 373 (748)
.+.|.+..|.++.- +.+.|-+- . ||||+|.-|||||.|.+++....... +- .| ..+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pA------N-----nVLLwGaRGtGKSSLVKA~~~e~~~~------gl---rL-VEV 119 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPA------N-----NVLLWGARGTGKSSLVKALLNEYADE------GL---RL-VEV 119 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcc------c-----ceEEecCCCCChHHHHHHHHHHHHhc------CC---eE-EEE
Confidence 46788888888864 34444221 1 89999999999999999998764321 00 01 011
Q ss_pred eecccccceeeccceEeeccCceeeecCCCcC-ChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC---Cc
Q 004502 374 TSDQETGERRLEAGAMVLADRGVVCIDEFDKM-NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY---GT 449 (748)
Q Consensus 374 ~~~~~~g~~~~~~G~l~la~~gil~IDEidk~-~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~---g~ 449 (748)
.++....=..+-.-.-.....-|+|.|++.-= .++.-.+|-.+|| |....-|.++.+-||+|... ..
T Consensus 120 ~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le---------G~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 120 DKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE---------GGVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred cHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc---------CCcccCCCeEEEEEecCCcccccHh
Confidence 11100000000000001123448999998532 3344567777887 44456688999999999752 12
Q ss_pred cCCCCC------ccccCCCChhhhccccEEEEecCCCChhHhHHHHHHHHH
Q 004502 450 YDRSLT------PTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 450 ~~~~~~------~~~ni~l~~~LlsRFdli~~~~d~~~~~~d~~ia~~il~ 494 (748)
+..+.. ..+.+.=--+|-|||.|...+ .+++.+.--.+..|...
T Consensus 191 ~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F-~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSF-YPCDQDEYLKIVDHYAK 240 (287)
T ss_pred hhhCCCcccccChhHHHHHhhchhhhcceeecc-cCCCHHHHHHHHHHHHH
Confidence 221111 112222222567899999888 55665555566666654
No 239
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00025 Score=85.03 Aligned_cols=162 Identities=22% Similarity=0.237 Sum_probs=90.6
Q ss_pred cCcccChHH----HHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEE-eccCCCCCccc
Q 004502 295 APSIYGHSW----IKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIS-TTGRGSSGVGL 369 (748)
Q Consensus 295 ~p~i~G~~~----~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~-~~g~~~~~~gl 369 (748)
+++|-|.+. +|..+++-|.-+-....-+=++-|| ||+.||||||||.++++++...+++.. ++--...+++.
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrg---vL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRG---VLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcc---eeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 456777655 4666666665432111001122343 999999999999999999988766321 00000001111
Q ss_pred ceeeeecccccceeecc----ceE-eec---cCceeeecCCCcCCh-----------hhHHHHHHHHhhceEEeecccee
Q 004502 370 TAAVTSDQETGERRLEA----GAM-VLA---DRGVVCIDEFDKMND-----------QDRVAIHEVMEQQTVTIAKAGIH 430 (748)
Q Consensus 370 t~~~~~~~~~g~~~~~~----G~l-~la---~~gil~IDEidk~~~-----------~~~~~L~e~me~~~i~i~k~g~~ 430 (748)
-+.|+.++ -.+ ..| ...|+|.||||-+.+ .+...|+..|+ |..
T Consensus 341 ---------lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd---------Gld 402 (1080)
T KOG0732|consen 341 ---------LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLD 402 (1080)
T ss_pred ---------hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc---------CCC
Confidence 11222221 001 111 246999999995543 33455555554 221
Q ss_pred EEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHHhhh
Q 004502 431 ASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLLFIVLDQMDPDIDRRISDHVLRMHR 497 (748)
Q Consensus 431 ~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli~~~~d~~~~~~d~~ia~~il~~~~ 497 (748)
. ...+.||+|+|... .+.++|.. |||-.|.+ ..|+.+. ..+|+..|.
T Consensus 403 s--RgqVvvigATnRpd-------------a~dpaLRRPgrfdref~f-~lp~~~a----r~~Il~Iht 451 (1080)
T KOG0732|consen 403 S--RGQVVVIGATNRPD-------------AIDPALRRPGRFDREFYF-PLPDVDA----RAKILDIHT 451 (1080)
T ss_pred C--CCceEEEcccCCcc-------------ccchhhcCCcccceeEee-eCCchHH----HHHHHHHhc
Confidence 1 13578999999865 47888854 99988887 4454443 345666664
No 240
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.001 Score=78.28 Aligned_cols=180 Identities=18% Similarity=0.195 Sum_probs=99.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc----------EEeccCCCCCcccceeeeeccccccee--ec--cceEeeccCce
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA----------ISTTGRGSSGVGLTAAVTSDQETGERR--LE--AGAMVLADRGV 396 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~----------~~~~g~~~~~~glt~~~~~~~~~g~~~--~~--~G~l~la~~gi 396 (748)
|-+|+|+||+|||.++.-+|.....+ ++.-..++ +.|. ....|++- ++ -..+..+.+-|
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~----LvAG---akyRGeFEeRlk~vl~ev~~~~~vI 265 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS----LVAG---AKYRGEFEERLKAVLKEVEKSKNVI 265 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH----Hhcc---ccccCcHHHHHHHHHHHHhcCCCeE
Confidence 67899999999999999988765431 11111110 1111 11123221 10 01122334569
Q ss_pred eeecCCCcCC---------hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhh
Q 004502 397 VCIDEFDKMN---------DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLL 467 (748)
Q Consensus 397 l~IDEidk~~---------~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Ll 467 (748)
+||||++.+= -+.-+.|..+|..|.+ ..|+|+...+-+ ..|.=.+||-
T Consensus 266 LFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL---------------~~IGATT~~EYR--------k~iEKD~AL~ 322 (786)
T COG0542 266 LFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL---------------RCIGATTLDEYR--------KYIEKDAALE 322 (786)
T ss_pred EEEechhhhcCCCcccccccchhhhhHHHHhcCCe---------------EEEEeccHHHHH--------HHhhhchHHH
Confidence 9999998641 2345566666665553 456776654311 1245689999
Q ss_pred ccccEEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCC
Q 004502 468 SRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRD 547 (748)
Q Consensus 468 sRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (748)
.||--+++ +.|+.+.-..|-.-+-..+ . . ...-
T Consensus 323 RRFQ~V~V--~EPs~e~ti~ILrGlk~~y-------------------E-------------~-------------hH~V 355 (786)
T COG0542 323 RRFQKVLV--DEPSVEDTIAILRGLKERY-------------------E-------------A-------------HHGV 355 (786)
T ss_pred hcCceeeC--CCCCHHHHHHHHHHHHHHH-------------------H-------------H-------------ccCc
Confidence 99987776 6676664333322211110 0 0 0112
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHhcc
Q 004502 548 TLTIQFLKKYIHYAKHRI-QPELTDEASEQIATTYAELRNS 587 (748)
Q Consensus 548 ~l~~~~lrkyi~~ar~~~-~P~ls~ea~~~i~~~y~~lR~~ 587 (748)
.++.+-|..-..+..+++ ...|++.|.++|-.....+|-.
T Consensus 356 ~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 356 RITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred eecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 344444544444444443 5678999999999988887764
No 241
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.46 E-value=0.0016 Score=76.01 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=34.2
Q ss_pred cccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC
Q 004502 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 297 ~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
++.||+.....+.-.+...... ...+. -++|+||||+|||++++.+++.+..
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~------~~~~~-illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLE------NAPKR-ILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccc------cCCCc-EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5778877555554444332110 00111 2899999999999999999988765
No 242
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.46 E-value=0.00014 Score=75.19 Aligned_cols=112 Identities=20% Similarity=0.358 Sum_probs=63.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cEEeccCCCCCcccceeeee---ccccc-ceeeccceEeeccCceeeecCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRGSSGVGLTAAVTS---DQETG-ERRLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~~~~~glt~~~~~---~~~~g-~~~~~~G~l~la~~gil~IDEid 403 (748)
+++|.|+||||||+|+.+++..+.. .+... +...+...... +.... +..++ .+..--+|+|||+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i----t~~~l~~~l~~~~~~~~~~~~~~l~----~l~~~dlLvIDDig 172 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLII----TVADIMSAMKDTFSNSETSEEQLLN----DLSNVDLLVIDEIG 172 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE----EHHHHHHHHHHHHhhccccHHHHHH----HhccCCEEEEeCCC
Confidence 7999999999999999999987643 11111 01111110000 00000 00111 12345699999998
Q ss_pred cCChh--hHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc
Q 004502 404 KMNDQ--DRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 404 k~~~~--~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
..... ....|+++++.+. ..+..+|.++|-....+.. .++..++||+
T Consensus 173 ~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l~~--------~~g~ri~sRl 221 (244)
T PRK07952 173 VQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEMTK--------LLGERVMDRM 221 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHHHH--------HhChHHHHHH
Confidence 87544 3457888887542 2234677778876433311 2566777776
No 243
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.46 E-value=0.00014 Score=65.47 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=56.0
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChh---
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQ--- 408 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~--- 408 (748)
|+|.|+||+|||.+++.+++.+-....... .... ..+.+ ..++. .|- ....++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----~~~v---y~~~~-~~~~w--~gY---~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----KDSV---YTRNP-GDKFW--DGY---QGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----CCcE---EeCCC-ccchh--hcc---CCCcEEEEeecCccccccch
Confidence 579999999999999998876543321000 0000 00111 11110 111 13569999999988754
Q ss_pred -hHHHHHHHHhhceEEeecccee---EEeccceeEeeecC
Q 004502 409 -DRVAIHEVMEQQTVTIAKAGIH---ASLNARCSVVAAAN 444 (748)
Q Consensus 409 -~~~~L~e~me~~~i~i~k~g~~---~~l~~~~~iiaa~N 444 (748)
....|...+....+....++.. ..++ .-.||+|+|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~-s~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFN-SKLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccC-CCEEEEcCC
Confidence 5667777777766665544433 2222 235666666
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.39 E-value=4.6e-05 Score=79.57 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=68.9
Q ss_pred ccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC-cEEeccCCCCCcccceeeeec
Q 004502 298 IYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL-AISTTGRGSSGVGLTAAVTSD 376 (748)
Q Consensus 298 i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~-~~~~~g~~~~~~glt~~~~~~ 376 (748)
+-+...+.++.+..+.+...... .+ . +++|+|+||+|||.|+-++++.+-. ++.+. ..+.+.+...+...
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~-~~-~-----nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~--f~~~~el~~~Lk~~ 151 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFE-RG-E-----NLVLLGPPGVGKTHLAIAIGNELLKAGISVL--FITAPDLLSKLKAA 151 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhc-cC-C-----cEEEECCCCCcHHHHHHHHHHHHHHcCCeEE--EEEHHHHHHHHHHH
Confidence 33444455555555544432221 11 2 8999999999999999999876643 11110 00111111111100
Q ss_pred ccccceeeccceEe-eccCceeeecCCCcCC--hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCcc
Q 004502 377 QETGERRLEAGAMV-LADRGVVCIDEFDKMN--DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTY 450 (748)
Q Consensus 377 ~~~g~~~~~~G~l~-la~~gil~IDEidk~~--~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~ 450 (748)
...|. .+.-..- +..--+|+|||+...+ +...+.+++++.+...+ +.. +.|+|-.++.|
T Consensus 152 ~~~~~--~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~ 213 (254)
T COG1484 152 FDEGR--LEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYES------------RSL-IITSNLSFGEW 213 (254)
T ss_pred HhcCc--hHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHH
Confidence 00110 0111111 3445699999998854 44577888887765321 233 77889887665
No 245
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=2.4e-05 Score=82.05 Aligned_cols=99 Identities=20% Similarity=0.326 Sum_probs=55.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cE-EeccCCCCCcccceeeeecccccce--eeccceEeeccCceeeecCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AI-STTGRGSSGVGLTAAVTSDQETGER--RLEAGAMVLADRGVVCIDEFDK 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~-~~~g~~~~~~glt~~~~~~~~~g~~--~~~~G~l~la~~gil~IDEidk 404 (748)
|++|+||||+|||+|+.+++..+.. .+ +++ ...+..........+.. .+. . ......+++|||+..
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-----~~~l~~~l~~a~~~~~~~~~~~-~--~~~~~dlLiiDdlg~ 175 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----AADLLLQLSTAQRQGRYKTTLQ-R--GVMAPRLLIIDEIGY 175 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-----HHHHHHHHHHHHHCCcHHHHHH-H--HhcCCCEEEEccccc
Confidence 7999999999999999999765421 11 111 01111000000001110 000 0 022346999999987
Q ss_pred C--ChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCcc
Q 004502 405 M--NDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTY 450 (748)
Q Consensus 405 ~--~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~ 450 (748)
. +......|+++++... . +-++|.|+|..++.|
T Consensus 176 ~~~~~~~~~~lf~li~~r~---~----------~~s~iiTsn~~~~~w 210 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRY---E----------KGSMILTSNLPFGQW 210 (259)
T ss_pred CCCChHHHHHHHHHHHHHH---h----------cCcEEEecCCCHHHH
Confidence 4 4455557888887542 0 124677888876665
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.35 E-value=5e-05 Score=82.08 Aligned_cols=115 Identities=14% Similarity=0.223 Sum_probs=62.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---c-EEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCc--
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---A-ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK-- 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~-~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk-- 404 (748)
+++|+|+||||||+|+.++++.+-. . +|++ ...+...............+...-.+.+--+|+|||+..
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-----~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-----ADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-----HHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 7999999999999999999987632 1 1221 111111110000000000000001122346999999955
Q ss_pred CChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc
Q 004502 405 MNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 405 ~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
.++..+..|++.++...- .+-.+|.|+|-....+.. .+++.++||+
T Consensus 260 ~t~~~~~~Lf~iin~R~~------------~~k~tIiTSNl~~~el~~--------~~~eri~SRL 305 (329)
T PRK06835 260 ITEFSKSELFNLINKRLL------------RQKKMIISTNLSLEELLK--------TYSERISSRL 305 (329)
T ss_pred CCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCHHHHHH--------HHhHHHHHHH
Confidence 456667888988876531 123567777865433210 1455666665
No 247
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.33 E-value=1.1e-05 Score=79.69 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=55.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-c---EEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-A---ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-~---~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~ 406 (748)
|++|+|+||||||.|+-++++.+-. + .++. ...|...+......+.. +.-.-.+.+-.+++|||+...+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-----~~~L~~~l~~~~~~~~~--~~~~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-----ASDLLDELKQSRSDGSY--EELLKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-----HHHHHHHHHCCHCCTTH--CHHHHHHHTSSCEEEETCTSS-
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-----cCceeccccccccccch--hhhcCccccccEecccccceee
Confidence 8999999999999999999865422 1 1111 11111111100001110 0000123455799999998654
Q ss_pred --hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccc
Q 004502 407 --DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 470 (748)
Q Consensus 407 --~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRF 470 (748)
+.....|+++++.+. . +-.+|.|+|..+..|... +. +-.+..+++||.
T Consensus 122 ~~~~~~~~l~~ii~~R~------------~-~~~tIiTSN~~~~~l~~~--~~-d~~~a~aildRl 171 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERY------------E-RKPTIITSNLSPSELEEV--LG-DRALAEAILDRL 171 (178)
T ss_dssp --HHHHHCTHHHHHHHH------------H-T-EEEEEESS-HHHHHT------------------
T ss_pred ecccccccchhhhhHhh------------c-ccCeEeeCCCchhhHhhc--cc-cccccccccccc
Confidence 556677888887653 1 124556899875444211 11 114677888886
No 248
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0028 Score=60.23 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.7
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
..+++.|+||+|||+++..++..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 36999999999999999999976654
No 249
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.29 E-value=0.015 Score=66.86 Aligned_cols=238 Identities=20% Similarity=0.192 Sum_probs=130.0
Q ss_pred HHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCC---------C--cEEe
Q 004502 291 GNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAP---------L--AIST 359 (748)
Q Consensus 291 ~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~---------~--~~~~ 359 (748)
.+.+..++.+.+.-..-|-..+-+-.+. ...| . -+.+.|-||||||+..+.+.+.+. . .+.+
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g-~-----~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI 463 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISD-QGLG-S-----CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI 463 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCC-CCCc-e-----eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE
Confidence 3344445666666666665555433111 0011 1 589999999999999998887443 2 2233
Q ss_pred ccCCCCCcccceeeeeccccccee-----eccceE------eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccc
Q 004502 360 TGRGSSGVGLTAAVTSDQETGERR-----LEAGAM------VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAG 428 (748)
Q Consensus 360 ~g~~~~~~glt~~~~~~~~~g~~~-----~~~G~l------~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g 428 (748)
.|.--....-.-...-...+|+.. +++-.. ......|++|||+|.|-..-|..|+...+=
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW--------- 534 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW--------- 534 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC---------
Confidence 332111100000000000112111 110000 112346999999999987777788877651
Q ss_pred eeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhh-----ccccEEEEecCCCChhHhHHHHHHHHHhhhccccCC
Q 004502 429 IHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLL-----SRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMD 503 (748)
Q Consensus 429 ~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Ll-----sRFdli~~~~d~~~~~~d~~ia~~il~~~~~~~~~~ 503 (748)
...-+++..|||-+|.. +||..+| ||.++.-+.+.+.+..+..+|...=|.
T Consensus 535 -pt~~~sKLvvi~IaNTm--------------dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~--------- 590 (767)
T KOG1514|consen 535 -PTLKNSKLVVIAIANTM--------------DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK--------- 590 (767)
T ss_pred -CcCCCCceEEEEecccc--------------cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc---------
Confidence 11225678899999875 3554444 466665555454444443333221110
Q ss_pred CCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 004502 504 GGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAE 583 (748)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~ 583 (748)
.+ -.+...|.++....-..
T Consensus 591 ------------------------------------------------------------~~-~~f~~~aielvarkVAa 609 (767)
T KOG1514|consen 591 ------------------------------------------------------------GL-DAFENKAIELVARKVAA 609 (767)
T ss_pred ------------------------------------------------------------ch-hhcchhHHHHHHHHHHh
Confidence 00 02344555555442221
Q ss_pred HhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCC-------CCccHHHHHHHHHHHHHhhhhc
Q 004502 584 LRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLN-------RKISKSDVEAALKALNFAIYHK 642 (748)
Q Consensus 584 lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~-------~~V~~~Dv~~Ai~l~~~sl~~~ 642 (748)
+...+|...-++|-|.-.|.-+.. ..|+..||.+|+.=|-.+.+..
T Consensus 610 -------------vSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~~ 662 (767)
T KOG1514|consen 610 -------------VSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYIK 662 (767)
T ss_pred -------------ccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHHH
Confidence 445678888888888777766665 7899999999998777665544
No 250
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0015 Score=70.35 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=41.4
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEecccee-EeeecCCCCCccCCCCCccccCCCChhhhccccE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS-VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 472 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~-iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl 472 (748)
.-|++||+.|+|+....++|+..||+= |.++. |+.|.||. .|.+++.||+-.
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~~--------------~lLpTIrSRCq~ 166 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQPA--------------RLPATIRSRCQR 166 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECChh--------------hCchHHHhhheE
Confidence 359999999999999999999999953 23443 44444453 589999999944
Q ss_pred EEEe
Q 004502 473 LFIV 476 (748)
Q Consensus 473 i~~~ 476 (748)
+.+
T Consensus 167 -i~~ 169 (319)
T PRK08769 167 -LEF 169 (319)
T ss_pred -eeC
Confidence 444
No 251
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.21 E-value=0.0058 Score=63.33 Aligned_cols=142 Identities=17% Similarity=0.209 Sum_probs=93.7
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCc--cCCCCCccccCCCChhhhcccc
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGT--YDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~--~~~~~~~~~ni~l~~~LlsRFd 471 (748)
.||+||||.+.++-+.-..|..++|+... ..++.|+|....+ -..+.++ -.+|-.||||.
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~--------------PiiimaTNrgit~iRGTn~~Sp---hGiP~D~lDR~- 350 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMA--------------PIIIMATNRGITRIRGTNYRSP---HGIPIDLLDRM- 350 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccC--------------cEEEEEcCCceEEeecCCCCCC---CCCcHHHhhhh-
Confidence 68999999999999999999999986532 1344445542110 0011111 15999999998
Q ss_pred EEEEecCCCChhHhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhccccccccCCcCCCCCH
Q 004502 472 LLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTI 551 (748)
Q Consensus 472 li~~~~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 551 (748)
|++...+....+ - ..||.....
T Consensus 351 lII~t~py~~~d-~----~~IL~iRc~----------------------------------------------------- 372 (454)
T KOG2680|consen 351 LIISTQPYTEED-I----KKILRIRCQ----------------------------------------------------- 372 (454)
T ss_pred heeecccCcHHH-H----HHHHHhhhh-----------------------------------------------------
Confidence 666653433222 1 223332110
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHH
Q 004502 552 QFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAA 631 (748)
Q Consensus 552 ~~lrkyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~A 631 (748)
--...++++|.++|...-. ..+.|--..||-.|.-.|.-+-.+.|+.+|+..|
T Consensus 373 ------------EEdv~m~~~A~d~Lt~i~~---------------~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~ 425 (454)
T KOG2680|consen 373 ------------EEDVEMNPDALDLLTKIGE---------------ATSLRYAIHLITAASLVCLKRKGKVVEVDDIERV 425 (454)
T ss_pred ------------hhccccCHHHHHHHHHhhh---------------hhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHH
Confidence 0112467788888776542 2367888888988888888888999999999999
Q ss_pred HHHHHHh
Q 004502 632 LKALNFA 638 (748)
Q Consensus 632 i~l~~~s 638 (748)
.+||-..
T Consensus 426 y~LFlD~ 432 (454)
T KOG2680|consen 426 YRLFLDE 432 (454)
T ss_pred HHHHhhh
Confidence 9999754
No 252
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0023 Score=73.87 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=91.5
Q ss_pred cCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCC---CCCcccceeeeecccccceeeccceEeeccCceeeecCCC
Q 004502 327 RGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG---SSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFD 403 (748)
Q Consensus 327 rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~---~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEid 403 (748)
..+.-+||.|+||+|||++.++++..++..++..... +..++.+-+....-........|-.+.+.+--++-||-..
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 3455899999999999999999999999876543211 1111111100000011122345666777777777777777
Q ss_pred cCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCCCChh
Q 004502 404 KMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPD 483 (748)
Q Consensus 404 k~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~~~~~ 483 (748)
-.+-..+..++..|..... ..--....++|+++... .+|+.+.+-|-..+.+ +.++++
T Consensus 509 ged~rl~~~i~~~ls~e~~--------~~~~~~~ivv~t~~s~~-------------~lp~~i~~~f~~ei~~-~~lse~ 566 (953)
T KOG0736|consen 509 GEDARLLKVIRHLLSNEDF--------KFSCPPVIVVATTSSIE-------------DLPADIQSLFLHEIEV-PALSEE 566 (953)
T ss_pred chhHHHHHHHHHHHhcccc--------cCCCCceEEEEeccccc-------------cCCHHHHHhhhhhccC-CCCCHH
Confidence 4444555556555541111 11123578888888765 5999999999666666 777777
Q ss_pred HhHHHHHHHHHhh
Q 004502 484 IDRRISDHVLRMH 496 (748)
Q Consensus 484 ~d~~ia~~il~~~ 496 (748)
++.++-+..+..+
T Consensus 567 qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 567 QRLEILQWYLNHL 579 (953)
T ss_pred HHHHHHHHHHhcc
Confidence 7777766665543
No 253
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0035 Score=67.66 Aligned_cols=117 Identities=13% Similarity=0.204 Sum_probs=68.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE----EeccC--------CCCCcccceeeeecccccc-eee---c---cce---
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGR--------GSSGVGLTAAVTSDQETGE-RRL---E---AGA--- 388 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~----~~~g~--------~~~~~glt~~~~~~~~~g~-~~~---~---~G~--- 388 (748)
-.||.||+|+||+.+|+.+++.+--.- ..+|. ..+..++.. . .+..|. ... + ...
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~--i-~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI--L-EPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE--E-ccccCCCCCHHHHHHHHHHHhhc
Confidence 477999999999999999998763210 01110 001111110 0 010110 000 0 000
Q ss_pred EeeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhh
Q 004502 389 MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLL 467 (748)
Q Consensus 389 l~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Ll 467 (748)
-..+...|++||++++|+....++|+..||+- |.+ ..++.|.||. .+++++.
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~t~~~~--------------~llpTI~ 155 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQADLSA--------------ALLPTIY 155 (325)
T ss_pred cccCCceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH--------------hCchHHH
Confidence 01123459999999999999999999999953 222 3455666664 5999999
Q ss_pred ccccEEEEecC
Q 004502 468 SRFDLLFIVLD 478 (748)
Q Consensus 468 sRFdli~~~~d 478 (748)
||. ..+.+..
T Consensus 156 SRC-~~~~~~~ 165 (325)
T PRK06871 156 SRC-QTWLIHP 165 (325)
T ss_pred hhc-eEEeCCC
Confidence 999 4555533
No 254
>PRK06921 hypothetical protein; Provisional
Probab=97.20 E-value=9e-05 Score=77.96 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=54.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc-----EEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCc-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA-----ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK- 404 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~-----~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk- 404 (748)
+++|+|+||+|||+|+.++++.+... +|++- ..+...+.... +. ...-.-.+..-.+|+|||+..
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~-----~~l~~~l~~~~--~~--~~~~~~~~~~~dlLiIDDl~~~ 189 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF-----VEGFGDLKDDF--DL--LEAKLNRMKKVEVLFIDDLFKP 189 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH-----HHHHHHHHHHH--HH--HHHHHHHhcCCCEEEEeccccc
Confidence 79999999999999999999876431 12210 01111100000 00 000000123456999999943
Q ss_pred ------CChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCc
Q 004502 405 ------MNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGT 449 (748)
Q Consensus 405 ------~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~ 449 (748)
+++-.+..|+.+++...- ..-.+|.|+|..+..
T Consensus 190 ~~g~e~~t~~~~~~lf~iin~R~~------------~~k~tIitsn~~~~e 228 (266)
T PRK06921 190 VNGKPRATEWQIEQMYSVLNYRYL------------NHKPILISSELTIDE 228 (266)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCHHH
Confidence 444456678888875531 112357788876543
No 255
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.17 E-value=0.00026 Score=71.02 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=68.1
Q ss_pred cccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChh
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQ 408 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~ 408 (748)
+.-++|+|+-|+|||++++.+... .+...... ....+. ...+...-++++||++.+.+.
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~------------~~~kd~-----~~~l~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIND------------FDDKDF-----LEQLQGKWIVELDELDGLSKK 110 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCcccc------------CCCcHH-----HHHHHHhHheeHHHHhhcchh
Confidence 446899999999999999988433 23221100 001111 112334468999999999999
Q ss_pred hHHHHHHHHhhceEEeecc--ceeEEeccceeEeeecCCC
Q 004502 409 DRVAIHEVMEQQTVTIAKA--GIHASLNARCSVVAAANPI 446 (748)
Q Consensus 409 ~~~~L~e~me~~~i~i~k~--g~~~~l~~~~~iiaa~Np~ 446 (748)
..+.|-..+-.....+... .....+|-+++++||+|..
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 9999999998888776553 3357788899999999985
No 256
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.14 E-value=0.0016 Score=66.74 Aligned_cols=72 Identities=24% Similarity=0.387 Sum_probs=53.6
Q ss_pred ceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEE
Q 004502 395 GVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLF 474 (748)
Q Consensus 395 gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~ 474 (748)
.+++|.|.|++..+.|.+|..-||.- ...|.+|..+|... .+-+|+.||+ |.+
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns~S-------------riIepIrSRC-l~i 181 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNSTS-------------RIIEPIRSRC-LFI 181 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecCcc-------------cchhHHhhhe-eEE
Confidence 48999999999999999999999932 34688888899865 5889999999 767
Q ss_pred EecCCCChhHhHHHHHHHHH
Q 004502 475 IVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 475 ~~~d~~~~~~d~~ia~~il~ 494 (748)
.+..+.+++ -..+-..++.
T Consensus 182 Rvpaps~ee-I~~vl~~v~~ 200 (351)
T KOG2035|consen 182 RVPAPSDEE-ITSVLSKVLK 200 (351)
T ss_pred eCCCCCHHH-HHHHHHHHHH
Confidence 774444433 3333344443
No 257
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=97.13 E-value=0.0015 Score=72.51 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCCC-CcccChhhhhhHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHhhhh
Q 004502 568 ELTDEASEQIATTYAELRNSSSNAKTGG-TLPITARTLETIIRLSTAHAKMK-----LNRKISKSDVEAALKALNFAIYH 641 (748)
Q Consensus 568 ~ls~ea~~~i~~~y~~lR~~~~~~~~~~-~~~~t~R~LesliRla~A~Akl~-----~~~~V~~~Dv~~Ai~l~~~sl~~ 641 (748)
.++++|...+.++|..++.......... ...+-.|.-+...|+|--.+-++ ....|+.+++..|+.|+++.+.+
T Consensus 287 ~ls~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~ 366 (378)
T PF13148_consen 287 ELSDEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEH 366 (378)
T ss_pred ecCHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHH
Confidence 7899999999999999876542211000 12234467788999999999999 88999999999999999987765
Q ss_pred c
Q 004502 642 K 642 (748)
Q Consensus 642 ~ 642 (748)
.
T Consensus 367 ~ 367 (378)
T PF13148_consen 367 A 367 (378)
T ss_pred H
Confidence 3
No 258
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=97.09 E-value=0.0011 Score=75.91 Aligned_cols=173 Identities=16% Similarity=0.250 Sum_probs=95.7
Q ss_pred eeccceEeeccCceeeecCCCcCC-hhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCC
Q 004502 383 RLEAGAMVLADRGVVCIDEFDKMN-DQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIG 461 (748)
Q Consensus 383 ~~~~G~l~la~~gil~IDEidk~~-~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~ 461 (748)
.++||++..|+||+|+||--+-+. +.....|..+|..+++.+...+. ..+. ++. .
T Consensus 322 ~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~-~~~~-------~~~----------------~ 377 (509)
T PF13654_consen 322 LIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEE-YGLS-------STV----------------S 377 (509)
T ss_dssp GEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S----TTS-------GGG----------------G
T ss_pred eEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccc-cccC-------CCC----------------C
Confidence 468999999999999999999887 56789999999999998875431 1100 000 0
Q ss_pred C-ChhhhccccEEEEecCCCChh-----HhHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCccccchhhHHhhhhhc
Q 004502 462 L-PDSLLSRFDLLFIVLDQMDPD-----IDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRML 535 (748)
Q Consensus 462 l-~~~LlsRFdli~~~~d~~~~~-----~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (748)
+ |+|+ -+|+-+++...+... .|..+.+.+ ... .. .
T Consensus 378 l~PepI--pl~vKVILiG~~~~y~~L~~~D~dF~~lF-kv~---ae-----------------------------f---- 418 (509)
T PF13654_consen 378 LEPEPI--PLDVKVILIGDRELYYLLYEYDPDFYKLF-KVK---AE-----------------------------F---- 418 (509)
T ss_dssp -B-S-E--E---EEEEEE-TTHHHHS-HHHHHHHHHH-SEE---EE----------------------------------
T ss_pred CCCCCc--ceEEEEEEEcCHHHHHHHHHhCHHHHhCC-CEE---EE-----------------------------c----
Confidence 1 1111 133444433333221 111121110 000 00 0
Q ss_pred cccccccCCcCCCCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHH
Q 004502 536 HGKRTQRGQKRDTLTIQFLKKYIHYAKH----RIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLS 611 (748)
Q Consensus 536 ~~~~~~~~~~~~~l~~~~lrkyi~~ar~----~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla 611 (748)
...-..+.+-++.|+.|.+. .--|.++.+|...|.++...+ .. ...++....+..|++-|
T Consensus 419 --------~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~--~q------~kLsl~~~~l~~ll~EA 482 (509)
T PF13654_consen 419 --------DSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARL--DQ------DKLSLRFSWLADLLREA 482 (509)
T ss_dssp ---------SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHC--C-------SEEE--HHHHHHHHHHH
T ss_pred --------cccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH--hC------CEeCCCHHHHHHHHHHH
Confidence 00112345556666665553 334679999999999988775 11 12566777899999999
Q ss_pred HHHHHhcCCCCccHHHHHHHHHH
Q 004502 612 TAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 612 ~A~Akl~~~~~V~~~Dv~~Ai~l 634 (748)
-+.|+....+.|+.+||..|+.-
T Consensus 483 ~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 483 NYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHHhCCCccCHHHHHHHHHc
Confidence 99999999999999999999973
No 259
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.01 E-value=0.0015 Score=63.73 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=20.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
|++|.|+||+|||++++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 69999999999999999988877
No 260
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.0029 Score=68.76 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=43.7
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhhccccE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 472 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl 472 (748)
.-|++||+.++|+....++|+..||+= |.+ +.|+.|.||. .|+++++||+ .
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~LLpTI~SRc-q 184 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID--------------RLLPTILSRC-R 184 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh--------------hCcHHHHhcC-E
Confidence 359999999999999999999999842 223 3566666664 5999999999 5
Q ss_pred EEEecC
Q 004502 473 LFIVLD 478 (748)
Q Consensus 473 i~~~~d 478 (748)
.+.+..
T Consensus 185 ~i~~~~ 190 (342)
T PRK06964 185 QFPMTV 190 (342)
T ss_pred EEEecC
Confidence 555533
No 261
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.92 E-value=0.00053 Score=71.13 Aligned_cols=124 Identities=17% Similarity=0.147 Sum_probs=79.7
Q ss_pred HHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCC
Q 004502 287 FDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSG 366 (748)
Q Consensus 287 ~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~ 366 (748)
++-|-..+...++||..++.-++-++.|-.....+ +...-+=+.|.|||||+..++.+++-+-+ .|..|.-
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p-----~KPLvLSfHG~tGTGKN~Va~iiA~n~~~----~Gl~S~~ 143 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPNP-----RKPLVLSFHGWTGTGKNYVAEIIAENLYR----GGLRSPF 143 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCC-----CCCeEEEecCCCCCchhHHHHHHHHHHHh----ccccchh
Confidence 45677788888999999999998888764332222 22234668899999999999999986633 2322222
Q ss_pred cccceeeeeccccc---cee-----eccceEeeccCceeeecCCCcCChhhHHHHHHHHhh
Q 004502 367 VGLTAAVTSDQETG---ERR-----LEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 367 ~glt~~~~~~~~~g---~~~-----~~~G~l~la~~gil~IDEidk~~~~~~~~L~e~me~ 419 (748)
+-...+...=+... .+. .-.|.+...+..++++||.|||++.....|...++.
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 21111100000000 000 012344456788999999999999999999999984
No 262
>PHA02774 E1; Provisional
Probab=96.91 E-value=0.0086 Score=68.32 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=59.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCC-hhh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMN-DQD 409 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~-~~~ 409 (748)
+++|+||||||||+++-++.+.+...+... +.. ...+.+. .+++.-+++|||+..-. .-.
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~f-------------vN~--~s~FwLq----pl~d~ki~vlDD~t~~~w~y~ 496 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF-------------VNS--KSHFWLQ----PLADAKIALLDDATHPCWDYI 496 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEE-------------EEC--ccccccc----hhccCCEEEEecCcchHHHHH
Confidence 799999999999999999999875322110 000 1122222 34456799999993321 222
Q ss_pred HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC
Q 004502 410 RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY 447 (748)
Q Consensus 410 ~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~ 447 (748)
...|..+|+.+.+++.+......--...-+|-|+|...
T Consensus 497 d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~ 534 (613)
T PHA02774 497 DTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDV 534 (613)
T ss_pred HHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCc
Confidence 34688888888888764332111111234677888653
No 263
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.0057 Score=66.56 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=45.5
Q ss_pred cCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccE
Q 004502 393 DRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 472 (748)
Q Consensus 393 ~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl 472 (748)
...|++||+.++|+....++|+..||+=. +.-+.|+.|.||. .|.+.+.||.-.
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp------------~~t~fiL~t~~~~--------------~lLpTIrSRCq~ 161 (334)
T PRK07993 108 GAKVVWLPDAALLTDAAANALLKTLEEPP------------ENTWFFLACREPA--------------RLLATLRSRCRL 161 (334)
T ss_pred CceEEEEcchHhhCHHHHHHHHHHhcCCC------------CCeEEEEEECChh--------------hChHHHHhcccc
Confidence 45699999999999999999999999531 1124566666664 599999999964
Q ss_pred EEEecCCCCh
Q 004502 473 LFIVLDQMDP 482 (748)
Q Consensus 473 i~~~~d~~~~ 482 (748)
+.+ .+++.
T Consensus 162 -~~~-~~~~~ 169 (334)
T PRK07993 162 -HYL-APPPE 169 (334)
T ss_pred -ccC-CCCCH
Confidence 444 33443
No 264
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.0022 Score=69.45 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=43.1
Q ss_pred ccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhcccc
Q 004502 392 ADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 392 a~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
+...|++||+++.|++..+++|+..||+.. ...+.|+.|.|+. .+++++.||+
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~------------~~~~~Ilvth~~~--------------~ll~ti~SRc- 164 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP------------PQVVFLLVSHAAD--------------KVLPTIKSRC- 164 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc------------CCCEEEEEeCChH--------------hChHHHHHHh-
Confidence 345699999999999999999999998641 1123455666664 4889999999
Q ss_pred EEEEe
Q 004502 472 LLFIV 476 (748)
Q Consensus 472 li~~~ 476 (748)
.++.+
T Consensus 165 ~~~~~ 169 (325)
T PRK08699 165 RKMVL 169 (325)
T ss_pred hhhcC
Confidence 44555
No 265
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.0079 Score=64.79 Aligned_cols=121 Identities=14% Similarity=0.219 Sum_probs=70.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE---EeccC--------CCCCcccceeeeecccccce-ee---cc------ceE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI---STTGR--------GSSGVGLTAAVTSDQETGER-RL---EA------GAM 389 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~---~~~g~--------~~~~~glt~~~~~~~~~g~~-~~---~~------G~l 389 (748)
-+||.||.|+||+.+++.+++.+--.- ..+|. ..+..++.. +..+ ..|.. .. +. ..-
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~p~-~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV-IKPE-KEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE-EecC-cCCCcCCHHHHHHHHHHHhhCc
Confidence 589999999999999999988763210 00110 001111110 0000 00100 00 00 001
Q ss_pred eeccCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhhc
Q 004502 390 VLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS 468 (748)
Q Consensus 390 ~la~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls 468 (748)
..+..-|++||++++|+....++|+..+|+= |.+ ..|+.|.||. .+.+.+.|
T Consensus 105 ~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI~S 157 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQK--------------RLLPTIVS 157 (319)
T ss_pred ccCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHh
Confidence 1223459999999999999999999999953 223 3455566664 48999999
Q ss_pred cccEEEEecCCCCh
Q 004502 469 RFDLLFIVLDQMDP 482 (748)
Q Consensus 469 RFdli~~~~d~~~~ 482 (748)
|+ ..+.+ .+++.
T Consensus 158 RC-q~~~~-~~~~~ 169 (319)
T PRK06090 158 RC-QQWVV-TPPST 169 (319)
T ss_pred cc-eeEeC-CCCCH
Confidence 99 45555 33443
No 266
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.64 E-value=0.00038 Score=64.52 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=19.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
+++++|+||+|||.+++.+++..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998875
No 267
>PHA02624 large T antigen; Provisional
Probab=96.57 E-value=0.0047 Score=70.69 Aligned_cols=113 Identities=12% Similarity=0.209 Sum_probs=69.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc-EEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh--
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA-ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND-- 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~-~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~-- 407 (748)
-+||+||||||||+++.++.+.+... +.+++ + +....++-| .++|.-++++|++..-.-
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNs--P--------------t~ks~FwL~--pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGKSLNVNC--P--------------PDKLNFELG--CAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEEeeC--C--------------cchhHHHhh--hhhhceEEEeeecccccccc
Confidence 69999999999999999999999432 22211 0 000011211 344566777777742211
Q ss_pred ---------hhHHHHHHHHhhc-eEEeeccc---eeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEE
Q 004502 408 ---------QDRVAIHEVMEQQ-TVTIAKAG---IHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLF 474 (748)
Q Consensus 408 ---------~~~~~L~e~me~~-~i~i~k~g---~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~ 474 (748)
+...-|..+|+.. .|++.+.. .....| -.|.|+|.. .||..+.-||-.++
T Consensus 495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P---PlliT~Ney--------------~iP~T~~~Rf~~~~ 557 (647)
T PHA02624 495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP---PGIVTMNEY--------------LIPQTVKARFAKVL 557 (647)
T ss_pred ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCC---CeEEeecCc--------------ccchhHHHHHHHhc
Confidence 1135677888766 66665422 223333 256678875 49999999998877
Q ss_pred EecC
Q 004502 475 IVLD 478 (748)
Q Consensus 475 ~~~d 478 (748)
.+..
T Consensus 558 ~F~~ 561 (647)
T PHA02624 558 DFKP 561 (647)
T ss_pred cccc
Confidence 7644
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.51 E-value=0.0039 Score=57.21 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=46.0
Q ss_pred HHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhC
Q 004502 287 FDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 287 ~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
.+.|...+...++||..++..++-++.+-.....+ +..+-+-+-|+||||||.+++.+|+-+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p-----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPNP-----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC-----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35677788889999999999888877654322111 222346699999999999999999875
No 269
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.0049 Score=61.75 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=25.2
Q ss_pred CcccEEEECCCCccHHHHHHHHHHhCCCc
Q 004502 328 GDINMMMVGDPSVAKSQLLRAIMNIAPLA 356 (748)
Q Consensus 328 g~i~iLL~G~pGtGKS~l~r~i~~~~~~~ 356 (748)
|..|.|++||||+|||+++|-+++.+..+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 44589999999999999999999987654
No 270
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.015 Score=61.60 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=66.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE--EeccC--CCCCcccceeeeecccccceeec-----cceE----eeccCcee
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI--STTGR--GSSGVGLTAAVTSDQETGERRLE-----AGAM----VLADRGVV 397 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~--~~~g~--~~~~~glt~~~~~~~~~g~~~~~-----~G~l----~la~~gil 397 (748)
-.||.||+|+||+.+|..+++.+--.- ..+.. .....++.. +..+..+.....+ -..+ ..+..-|+
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ 99 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYESPYKIY 99 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCCCceEE
Confidence 578999999999999999988763210 00000 001111110 0000000000000 0001 11234599
Q ss_pred eecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEE
Q 004502 398 CIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLF 474 (748)
Q Consensus 398 ~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~ 474 (748)
+||+.++|+.+..++|+..||+-. +.-..++.|.|+. .+++++.||+-.+.
T Consensus 100 ii~~ad~mt~~AaNaLLK~LEEPp------------~~~~fiL~~~~~~--------------~ll~TI~SRcq~~~ 150 (290)
T PRK05917 100 IIHEADRMTLDAISAFLKVLEDPP------------QHGVIILTSAKPQ--------------RLPPTIRSRSLSIH 150 (290)
T ss_pred EEechhhcCHHHHHHHHHHhhcCC------------CCeEEEEEeCChh--------------hCcHHHHhcceEEE
Confidence 999999999999999999999531 1124456666664 49999999994433
No 271
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.45 E-value=0.0029 Score=72.70 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=48.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEee-c--cCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVL-A--DRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~l-a--~~gil~IDEidk~~~ 407 (748)
=+||+||||.|||+||+.+|+-++-.+.-.. .+. .=++.+++....+. ...-. ++ | ....++|||||-.++
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEIN--ASD-eRt~~~v~~kI~~a--vq~~s-~l~adsrP~CLViDEIDGa~~ 401 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEIN--ASD-ERTAPMVKEKIENA--VQNHS-VLDADSRPVCLVIDEIDGAPR 401 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEec--ccc-cccHHHHHHHHHHH--Hhhcc-ccccCCCcceEEEecccCCcH
Confidence 3899999999999999999998865442211 110 11121111111110 00001 12 2 245888999999998
Q ss_pred hhHHHHHHHHh
Q 004502 408 QDRVAIHEVME 418 (748)
Q Consensus 408 ~~~~~L~e~me 418 (748)
.....|+..++
T Consensus 402 ~~Vdvilslv~ 412 (877)
T KOG1969|consen 402 AAVDVILSLVK 412 (877)
T ss_pred HHHHHHHHHHH
Confidence 77777777776
No 272
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.43 E-value=0.028 Score=60.54 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=73.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
=++|+|+.|+|||++++.+..+++...... .+...+. +..++. .+.-.+...-+++.||+..-.....
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~~~---~~~~~~~-----~~~~~~----f~~a~l~gk~l~~~~E~~~~~~~~~ 145 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLLGDYATTA---VASLKMN-----EFQEHR----FGLARLEGKRAVIGDEVQKGYRDDE 145 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhChhhccC---Ccchhhh-----hccCCC----chhhhhcCCEEEEecCCCCCccccH
Confidence 589999999999999999999987632110 0000000 000111 1111233455788999875433344
Q ss_pred HHHHHHHhhceEEeeccce-eEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 411 VAIHEVMEQQTVTIAKAGI-HASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 411 ~~L~e~me~~~i~i~k~g~-~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
..|-.+.....+++.+.+. .......+.++.++|..+.-- .-+.++.+|+ +++.+
T Consensus 146 ~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~----------~~~~a~~RR~-~vi~f 201 (304)
T TIGR01613 146 STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR----------GFDGGIKRRL-RIIPF 201 (304)
T ss_pred HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC----------CCChhheeeE-EEEec
Confidence 5666666667777765443 345555788999999765321 2467889999 55554
No 273
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.36 E-value=0.048 Score=57.64 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHcccCcccChHHHHHHHHH--HHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC
Q 004502 289 LLGNSLAPSIYGHSWIKKAVIL--LMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 289 ~l~~si~p~i~G~~~~K~aill--~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
+|..--.|--+|+..+++++-. .|+... ....++ ++||+||+|.|||++++.....-|.
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp-----~lLivG~snnGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEELLEYP---KRHRMP-----NLLIVGDSNNGKTMIIERFRRLHPP 87 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHHHHhCC---cccCCC-----ceEEecCCCCcHHHHHHHHHHHCCC
Confidence 3444445677888888776643 344331 122334 8999999999999999999987775
No 274
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.24 E-value=0.0017 Score=71.30 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=23.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
++.|+|++|+|||+|+-.....+|.
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCc
Confidence 5999999999999999999998876
No 275
>PRK13695 putative NTPase; Provisional
Probab=96.04 E-value=0.019 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
+++|+|+||+|||+|++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987654
No 276
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.097 Score=56.45 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=69.8
Q ss_pred ccHHHHHHHccc--CcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 284 DDTFDLLGNSLA--PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 284 ~~~~~~l~~si~--p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
+...+.|.+||. |..+.... |-.++.-|+.- .-++.|++=.||.+||||.+-+- .+|....++|
T Consensus 189 deWidVLirsiGmePa~~e~rt-kwhll~Rlvpl----------VEnNyN~cElGPr~TGKshvYke---vSpn~~liSG 254 (683)
T COG4930 189 DEWIDVLIRSIGMEPAVYEPRT-KWHLLARLVPL----------VENNYNMCELGPRQTGKSHVYKE---VSPNVRLISG 254 (683)
T ss_pred HHHHHHHHHhcCCCccccChhh-hHHHHHHHHHH----------hhCCcchhhcCCCccCccceehc---cCCceEEeeC
Confidence 344566777653 44544322 32333333321 23455899999999999998764 4566667777
Q ss_pred CCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcC---ChhhHHHHHHHHhhceEE
Q 004502 362 RGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKM---NDQDRVAIHEVMEQQTVT 423 (748)
Q Consensus 362 ~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~---~~~~~~~L~e~me~~~i~ 423 (748)
...+.+.|.-.. ..-.+|.+-+- .++.+||.... +++-...|...|+.|.+.
T Consensus 255 GqttvAnLFYNm--------atrqiGlvg~w--DvVaFDEVagirFkdkDg~qilKDYMaSGsf~ 309 (683)
T COG4930 255 GQTTVANLFYNM--------ATRQIGLVGLW--DVVAFDEVAGIRFKDKDGMQILKDYMASGSFE 309 (683)
T ss_pred CcccHHHHHHHH--------hhccccceeee--eeeeehhhccccccCccHHHHHHHHHhcCCcc
Confidence 655544443221 11234544332 37889999775 345567888899999754
No 277
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.79 E-value=0.0071 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.1
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCc
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLA 356 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~ 356 (748)
|+|.|+||+|||++++.+++.++-.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 7899999999999999999976443
No 278
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.73 E-value=0.12 Score=59.38 Aligned_cols=27 Identities=7% Similarity=0.289 Sum_probs=24.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
-+||.||||+|||+.++.+++.+...+
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 588999999999999999999987644
No 279
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.73 E-value=0.0078 Score=56.62 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.5
Q ss_pred EEEECCCCccHHHHHHHHHHhCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
|+++|+||+|||++++.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998876
No 280
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.011 Score=67.75 Aligned_cols=139 Identities=14% Similarity=0.221 Sum_probs=75.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE-----EeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI-----STTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~-----~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~ 405 (748)
||||.|++|+|||.|++++++.+.... ++.+....+.. +..+.+.. ..|. .-++. -...|+++|++|.+
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~-~e~iQk~l--~~vf--se~~~-~~PSiIvLDdld~l 506 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS-LEKIQKFL--NNVF--SEALW-YAPSIIVLDDLDCL 506 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh-HHHHHHHH--HHHH--HHHHh-hCCcEEEEcchhhh
Confidence 899999999999999999999876632 11111100000 00000000 0000 00011 12468899999876
Q ss_pred Ch---------hh-HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhc--cccEE
Q 004502 406 ND---------QD-RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLS--RFDLL 473 (748)
Q Consensus 406 ~~---------~~-~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~Lls--RFdli 473 (748)
-. .. -+.|-.++.| .+- +..+.+....+||+.+... .|++-|.| +|+.+
T Consensus 507 ~~~s~~e~~q~~~~~~rla~flnq-vi~-----~y~~~~~~ia~Iat~qe~q-------------tl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 507 ASASSNENGQDGVVSERLAAFLNQ-VIK-----IYLKRNRKIAVIATGQELQ-------------TLNPLLVSPLLFQIV 567 (952)
T ss_pred hccCcccCCcchHHHHHHHHHHHH-HHH-----HHHccCcEEEEEEechhhh-------------hcChhhcCccceEEE
Confidence 33 11 1222223322 110 1223455678999987643 23444433 88888
Q ss_pred EEecCCCChhHhHHHHHHHHHh
Q 004502 474 FIVLDQMDPDIDRRISDHVLRM 495 (748)
Q Consensus 474 ~~~~d~~~~~~d~~ia~~il~~ 495 (748)
..+ ..|+...+..|..++...
T Consensus 568 ~~L-~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 568 IAL-PAPAVTRRKEILTTIFSK 588 (952)
T ss_pred Eec-CCcchhHHHHHHHHHHHh
Confidence 887 667777777888877763
No 281
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.70 E-value=0.012 Score=59.06 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=45.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cEEecc-CCC------CCcccceeeeeccccc-ceeeccceEeeccCceeee
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AISTTG-RGS------SGVGLTAAVTSDQETG-ERRLEAGAMVLADRGVVCI 399 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g-~~~------~~~glt~~~~~~~~~g-~~~~~~G~l~la~~gil~I 399 (748)
-.++.|+||||||++++.+...+.. .+.... ... ...+..+..+...... ......+........+++|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 4677899999999999988765532 221111 000 0001111111110000 0000001111344569999
Q ss_pred cCCCcCChhhHHHHHHHHhh
Q 004502 400 DEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 400 DEidk~~~~~~~~L~e~me~ 419 (748)
||...++......|+.....
T Consensus 100 DEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 100 DEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SSGGG-BHHHHHHHHHHS-T
T ss_pred ecccccCHHHHHHHHHHHHh
Confidence 99999999988888887764
No 282
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=95.64 E-value=0.071 Score=68.68 Aligned_cols=149 Identities=14% Similarity=0.177 Sum_probs=87.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-cEEe-ccCCCCCcccceeeeecccccceeeccceEeec---cCceeeecCCCcC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-AIST-TGRGSSGVGLTAAVTSDQETGERRLEAGAMVLA---DRGVVCIDEFDKM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-~~~~-~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la---~~gil~IDEidk~ 405 (748)
.++++|++|+|||.+.......... .++. +....+...++..+.... . + ...++. ... ..=++|+||++.-
T Consensus 129 ~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~-~-~-k~~~~~-~~~~~~~~~~~f~ddinmp 204 (1395)
T KOG3595|consen 129 PVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESK-L-D-KRRSGN-YGPPLGKKLVLFVDDINMP 204 (1395)
T ss_pred eEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHH-H-H-HhcccC-CCCCCCceeEEEEeccCCc
Confidence 6999999999999998776655443 2222 111111111111000000 0 0 001111 111 1238999999864
Q ss_pred Ch------hhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC-CccCCCCCccccCCCChhhhccccEEEEecC
Q 004502 406 ND------QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY-GTYDRSLTPTKNIGLPDSLLSRFDLLFIVLD 478 (748)
Q Consensus 406 ~~------~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~-g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d 478 (748)
.. .....+++.+|.+.+.-...+ ....--++.+++|+||.. |++ .+++.++..| .++.+ +
T Consensus 205 ~~~~yg~q~~~~~lrq~~e~~g~~~~~~~-~~~~i~~i~~~~a~~~~~~gr~----------~i~~r~~r~f-~~~~~-~ 271 (1395)
T KOG3595|consen 205 ALDKYGDQPPIELLRQMLEHGGFYDRKKS-EWVEIENVQLVGAMNPPGGGRN----------DITERFLRHF-LIVSL-N 271 (1395)
T ss_pred hhhhcCCccHHHHHHHHHHhceeeccccc-ceeEEeeeEEEeecCCCCCccC----------cccHHHHHHe-eeEee-C
Confidence 33 446788889998766543332 233334789999999743 554 6999999999 44454 6
Q ss_pred CCChhHhHHHHHHHHHhh
Q 004502 479 QMDPDIDRRISDHVLRMH 496 (748)
Q Consensus 479 ~~~~~~d~~ia~~il~~~ 496 (748)
.++.+.-..|-.+++..|
T Consensus 272 ~~~~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGH 289 (1395)
T ss_pred CCChhhHHHHHHHHHhcc
Confidence 677777777888877755
No 283
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.57 E-value=0.026 Score=57.90 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHHhC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
+++.|.||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4688999999999999988873
No 284
>PRK14532 adenylate kinase; Provisional
Probab=95.54 E-value=0.013 Score=58.13 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=25.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
+|+++|+||+|||++++.+++..+..+..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 699999999999999999999886555443
No 285
>PRK04296 thymidine kinase; Provisional
Probab=95.54 E-value=0.023 Score=56.73 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=17.4
Q ss_pred EEEECCCCccHHHHHHHHHHhC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
.+++||||+|||+++..++..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 6889999999998876665443
No 286
>PRK10536 hypothetical protein; Provisional
Probab=95.52 E-value=0.033 Score=57.75 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.4
Q ss_pred cCceeeecCCCcCChhhHHHHHHHHh
Q 004502 393 DRGVVCIDEFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 393 ~~gil~IDEidk~~~~~~~~L~e~me 418 (748)
++++++|||...+++.....++..+.
T Consensus 176 ~~~~vIvDEaqn~~~~~~k~~ltR~g 201 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQMKMFLTRLG 201 (262)
T ss_pred cCCEEEEechhcCCHHHHHHHHhhcC
Confidence 46899999999999988777776553
No 287
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.51 E-value=0.04 Score=59.75 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=58.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
=++|+|||+||||+++-.+.+.+...+...-.. ...+.+. .+++..|.+||+.....=+-.
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns---------------~ShFWLq----PL~d~Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS---------------KSHFWLQ----PLADAKIALLDDATYPCWDYI 324 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGT---------------TSCGGGG----GGCT-SSEEEEEE-HHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEEecCC---------------CCccccc----chhcCcEEEEcCCcccHHHHH
Confidence 589999999999999999999886554321111 1223344 356777999999865333322
Q ss_pred -HHHHHHHhhceEEeec---cceeEEeccceeEeeecCCCC
Q 004502 411 -VAIHEVMEQQTVTIAK---AGIHASLNARCSVVAAANPIY 447 (748)
Q Consensus 411 -~~L~e~me~~~i~i~k---~g~~~~l~~~~~iiaa~Np~~ 447 (748)
..|..+|+...+++.. +.+..+.| -+|-|+|-..
T Consensus 325 D~ylRNaLDGN~vsiD~KHkap~Qik~P---PLlITsN~dv 362 (432)
T PF00519_consen 325 DTYLRNALDGNPVSIDCKHKAPVQIKCP---PLLITSNIDV 362 (432)
T ss_dssp HHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-T
T ss_pred HHHHHhccCCCeeeeeccCCCceEeecC---ceEEecCCCC
Confidence 3467788888998863 33334444 3556778653
No 288
>PRK13947 shikimate kinase; Provisional
Probab=95.43 E-value=0.015 Score=56.62 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
||+|+|+||+|||++++.+++.++..++-.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 7999999999999999999999987665443
No 289
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.015 Score=54.46 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.2
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
.|||+.|-||||||+++..+|....-...-.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 3999999999999999999998876654443
No 290
>PRK08118 topology modulation protein; Reviewed
Probab=95.38 E-value=0.015 Score=56.87 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
.|+++|+||+|||++++.+++.++-.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 5899999999999999999998765543
No 291
>PF13173 AAA_14: AAA domain
Probab=95.36 E-value=0.017 Score=53.68 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=43.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC---CcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCCh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP---LAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMND 407 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~---~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~ 407 (748)
-++|.|+.|+|||++++.+++... ..++.+-.......+. +...-+...+. ......+++|||+..++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-----DPDLLEYFLEL---IKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-----hhhhHHHHHHh---hccCCcEEEEehhhhhcc
Confidence 589999999999999998886654 2333321110000000 00000000000 111467899999999974
Q ss_pred hhHHHHHHHHhh
Q 004502 408 QDRVAIHEVMEQ 419 (748)
Q Consensus 408 ~~~~~L~e~me~ 419 (748)
....+....+.
T Consensus 76 -~~~~lk~l~d~ 86 (128)
T PF13173_consen 76 -WEDALKFLVDN 86 (128)
T ss_pred -HHHHHHHHHHh
Confidence 45555555553
No 292
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.015 Score=57.30 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
.|+++|+||+|||++|+.+++.++-...-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999997665443
No 293
>PHA00729 NTP-binding motif containing protein
Probab=95.18 E-value=0.014 Score=59.43 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=22.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
+++|+|+||||||+||..+++.+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998653
No 294
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.14 E-value=0.021 Score=54.41 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=24.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
+|+|+|+||+|||++++.+++.++..++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999988765544
No 295
>PRK03839 putative kinase; Provisional
Probab=95.14 E-value=0.02 Score=56.41 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=25.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
.|+|+|+||+|||++++.+++.++..+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id 30 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVD 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58999999999999999999988665543
No 296
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.10 E-value=0.023 Score=68.53 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=49.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cEEec---cCC----CCCcccceeeeecccccceeeccceEeeccCceeeec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AISTT---GRG----SSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCID 400 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~---g~~----~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~ID 400 (748)
-++|.|+||||||++++.+...+.. .+... |+. ....|..+....... ..+..+.-.+....+++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~---~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLE---YAWANGRDLLSDKDVLVID 446 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHH---hhhccCcccCCCCcEEEEE
Confidence 4789999999999999999766533 12111 110 001122211111000 0012222234467799999
Q ss_pred CCCcCChhhHHHHHHHHh
Q 004502 401 EFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 401 Eidk~~~~~~~~L~e~me 418 (748)
|+.+++......|+....
T Consensus 447 EasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 447 EAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999998887777544
No 297
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.10 E-value=0.012 Score=64.80 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=21.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
-+++.|.||||||.||-.+++.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48899999999999999998877
No 298
>PRK14530 adenylate kinase; Provisional
Probab=95.09 E-value=0.021 Score=58.09 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=25.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
+|+|+|+||+|||++++.+++.++..+..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999987654443
No 299
>PRK00625 shikimate kinase; Provisional
Probab=95.05 E-value=0.022 Score=55.87 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=25.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
||+|+|.||+|||++++.+++.+...+.-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999999988665543
No 300
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.04 E-value=0.024 Score=55.91 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.8
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcE
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
|+++|+||+|||++++.+++.++-..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~ 27 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH 27 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 78999999999999999999886433
No 301
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=0.17 Score=54.14 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=42.0
Q ss_pred cCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEe-eecCCCCCccCCCCCccccCCCChhhhcccc
Q 004502 393 DRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVV-AAANPIYGTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 393 ~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~ii-aa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
+.-|++||+.++|+....++|+..||+- |..+.+| .+.||. .+.+++.||.
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~~--------------kll~TI~SRc- 141 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNIN--------------KVLPTIVSRC- 141 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChH--------------hChHHHHhCe-
Confidence 4569999999999999999999999852 3334444 444552 4889999999
Q ss_pred EEEEe
Q 004502 472 LLFIV 476 (748)
Q Consensus 472 li~~~ 476 (748)
.++.+
T Consensus 142 ~~~~f 146 (299)
T PRK07132 142 QVFNV 146 (299)
T ss_pred EEEEC
Confidence 44555
No 302
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.99 E-value=0.024 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
+|+|+|+||+|||++++.+++.++..++
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999998865444
No 303
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.96 E-value=0.038 Score=64.58 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=22.0
Q ss_pred ceeeecCCCcCChhhHHHHHHHHhh
Q 004502 395 GVVCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 395 gil~IDEidk~~~~~~~~L~e~me~ 419 (748)
.+++|||+.+++......|++++..
T Consensus 261 dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 261 DVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred cEEEEcccccCCHHHHHHHHHhcCC
Confidence 5999999999999988888888754
No 304
>PRK07261 topology modulation protein; Provisional
Probab=94.89 E-value=0.027 Score=55.15 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.|+++|+||+|||+|++.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999887643
No 305
>PTZ00301 uridine kinase; Provisional
Probab=94.88 E-value=0.12 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
=|.+.|+||+|||+|++.+++.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 37899999999999999887654
No 306
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.86 E-value=0.032 Score=57.39 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=27.1
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
..|+|+|+||+|||++++.+++.++..+..+|
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 36999999999999999999998876655554
No 307
>PRK13949 shikimate kinase; Provisional
Probab=94.83 E-value=0.028 Score=55.00 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=24.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
+|+|+|+||+|||++++.+++.+...+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 6999999999999999999998865543
No 308
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.80 E-value=0.088 Score=52.89 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-++++||+|+|||++++++...++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999887775
No 309
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.76 E-value=0.17 Score=51.09 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-|.|+|++|+|||+|++.++..++.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4889999999999999999998763
No 310
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.75 E-value=0.03 Score=54.89 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
+++++|+||+|||++++.+...+.
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999998876553
No 311
>PF13245 AAA_19: Part of AAA domain
Probab=94.71 E-value=0.045 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=16.6
Q ss_pred EEEECCCCccHH-HHHHHHHHhC
Q 004502 332 MMMVGDPSVAKS-QLLRAIMNIA 353 (748)
Q Consensus 332 iLL~G~pGtGKS-~l~r~i~~~~ 353 (748)
+++.|+|||||| ++++.++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 555999999999 5566666654
No 312
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.1 Score=54.19 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=40.5
Q ss_pred CceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhhccccE
Q 004502 394 RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 472 (748)
Q Consensus 394 ~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdl 472 (748)
.-|++|+++++|+....++|+..+|+- |.+ ..++.|.|+. .+.+.+.||.-.
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~--------------~lLpTI~SRCq~ 141 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNEN--------------NILNTILSRCVQ 141 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChH--------------hCchHhhhheee
Confidence 459999999999999999999999853 223 3455555564 599999999833
No 313
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.68 E-value=0.023 Score=52.03 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHHhC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
|+|.|.||+|||++++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 314
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.67 E-value=0.029 Score=46.04 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHHhC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999875
No 315
>PRK14531 adenylate kinase; Provisional
Probab=94.65 E-value=0.033 Score=55.17 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
.|+++|+||+|||++++.+++.++-....
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 59999999999999999999987654433
No 316
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.64 E-value=0.035 Score=55.16 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=23.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
+|+++|+||+|||++++.+++.++-.+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 3899999999999999999998755443
No 317
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.62 E-value=0.033 Score=61.51 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=49.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc---EEecc-CCCCC--c--ccceeeeec-ccc-cce-ee--c---cceEeeccC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTG-RGSSG--V--GLTAAVTSD-QET-GER-RL--E---AGAMVLADR 394 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g-~~~~~--~--glt~~~~~~-~~~-g~~-~~--~---~G~l~la~~ 394 (748)
++++.|+.|||||.+++++...+... +.++. .+..+ . |.|...... +.. ... .. . .-.-.+.+-
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRKA 103 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhhh
Confidence 79999999999999999998877542 32221 11111 1 111110000 000 000 00 0 001123344
Q ss_pred ceeeecCCCcCChhhHHHHHHHHh
Q 004502 395 GVVCIDEFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 395 gil~IDEidk~~~~~~~~L~e~me 418 (748)
.+++|||+..++......+...|.
T Consensus 104 ~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 104 DVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred eeeecccccchhHHHHHHHHHhhh
Confidence 699999999999998887777665
No 318
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.60 E-value=0.034 Score=66.78 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=47.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-----cEEec---cCC----CCCcccceeeeecccccceeeccceEe------ec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-----AISTT---GRG----SSGVGLTAAVTSDQETGERRLEAGAMV------LA 392 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-----~~~~~---g~~----~~~~glt~~~~~~~~~g~~~~~~G~l~------la 392 (748)
.++|.|.||||||++++.+.+.+.. .+... |+. ....|..+........ ..++... ..
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~----~~~~~~~~~~~~~~~ 415 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLG----YGPDTFRHNHLEDPI 415 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhh----ccCCccchhhhhccc
Confidence 6899999999999999998776542 22221 110 0001111111100000 0011100 12
Q ss_pred cCceeeecCCCcCChhhHHHHHHHHh
Q 004502 393 DRGVVCIDEFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 393 ~~gil~IDEidk~~~~~~~~L~e~me 418 (748)
...+++|||+.+++......|+.++.
T Consensus 416 ~~~llIvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 416 DCDLLIVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred cCCEEEEeccccCCHHHHHHHHHhCC
Confidence 45799999999999988888877654
No 319
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.50 E-value=0.036 Score=56.35 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=16.0
Q ss_pred EEEECCCCccHHHHHHHHHHh
Q 004502 332 MMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~ 352 (748)
.++.||||||||+++-.+...
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 899999999999766655544
No 320
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.49 E-value=0.033 Score=54.98 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=23.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
-++++|+||+|||++++.+++.++.....
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 48899999999999999999876544333
No 321
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.48 E-value=0.23 Score=51.07 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=51.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc----EEeccCCCCCcccceeeeeccccc-ceeec-------cceEeec----cC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA----ISTTGRGSSGVGLTAAVTSDQETG-ERRLE-------AGAMVLA----DR 394 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~----~~~~g~~~~~~glt~~~~~~~~~g-~~~~~-------~G~l~la----~~ 394 (748)
-+.++|+-|+|||.+.|++...++.. ++......+..++...+..+.... .|... .+...+. .+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 48999999999999999888777763 122222222333322222221111 11111 1111111 12
Q ss_pred ceeeecCCCcCChhhHHHHHHHHh
Q 004502 395 GVVCIDEFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 395 gil~IDEidk~~~~~~~~L~e~me 418 (748)
-++++||..-+..+...+|.-.++
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~n 156 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTN 156 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHh
Confidence 488999999999999888877665
No 322
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.48 E-value=0.041 Score=67.56 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=49.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-cEEeccCCCC---------CcccceeeeecccccceeeccceEeeccCceeeec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-AISTTGRGSS---------GVGLTAAVTSDQETGERRLEAGAMVLADRGVVCID 400 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-~~~~~g~~~~---------~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~ID 400 (748)
.+++.|.||||||++++.+...+.. +..+.+...+ ..|+.+.++..... .+..|...+....+++||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~---~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEH---GWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHh---hhcccccccccCcEEEEE
Confidence 3679999999999999988766532 1111111111 11222211111000 011233334556799999
Q ss_pred CCCcCChhhHHHHHHHHh
Q 004502 401 EFDKMNDQDRVAIHEVME 418 (748)
Q Consensus 401 Eidk~~~~~~~~L~e~me 418 (748)
|+.+++......|+...+
T Consensus 441 EASMv~~~~m~~LL~~a~ 458 (988)
T PRK13889 441 EAGMVGTRQLERVLSHAA 458 (988)
T ss_pred CcccCCHHHHHHHHHhhh
Confidence 999999998888887654
No 323
>PRK06762 hypothetical protein; Provisional
Probab=94.40 E-value=0.041 Score=53.34 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=23.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
-|+|+|+||+|||++++.+++.++.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~ 30 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGT 30 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 488999999999999999998875433
No 324
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.38 E-value=0.084 Score=62.01 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHh
Q 004502 301 HSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 301 ~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
.+.=|.|+.+++..+ -.+|.|+||||||++++.+...
T Consensus 154 ~d~Qk~Av~~a~~~~---------------~~vItGgpGTGKTt~v~~ll~~ 190 (615)
T PRK10875 154 VDWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAA 190 (615)
T ss_pred CHHHHHHHHHHhcCC---------------eEEEEeCCCCCHHHHHHHHHHH
Confidence 466788888888765 5899999999999998776554
No 325
>PRK06217 hypothetical protein; Validated
Probab=94.32 E-value=0.047 Score=54.02 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=24.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
+|+|+|.||+|||++++.+++.++..++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 5999999999999999999998865543
No 326
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.21 E-value=0.052 Score=53.23 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
+|+|+|++|+|||++++.+++.++..+.-
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd 34 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEE
Confidence 79999999999999999999987655443
No 327
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.21 E-value=0.045 Score=54.36 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=25.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
.+.|+||+|+|||++++.++...+..+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~ 33 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVA 33 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEc
Confidence 689999999999999999998876555443
No 328
>PRK14709 hypothetical protein; Provisional
Probab=94.19 E-value=0.6 Score=53.28 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=66.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
=++++|+-|.|||++++.+..+++...... +...++... .+.. .+....+...-+++.+|.+.-..-.-
T Consensus 207 ~~~l~G~G~NGKSt~~~~i~~llG~~~~~~----~~~~~~~~~-----~~~~--~~~lA~L~Gkrlv~~~E~~~g~~~~~ 275 (469)
T PRK14709 207 LVFVFGGGGNGKSVFLNVLAGILGDYATTA----AMDTFTASK-----HDRH--PTDLAMLRGARLVTASETEEGRAWAE 275 (469)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhhcccC----CHHHHhhcc-----ccCC--chhhHhhcCCeEEEeecCCcccccCH
Confidence 478899999999999999999986521110 000111100 0000 01111122334677788865322222
Q ss_pred HHHHHHHhhceEEeeccc-eeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEe
Q 004502 411 VAIHEVMEQQTVTIAKAG-IHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476 (748)
Q Consensus 411 ~~L~e~me~~~i~i~k~g-~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~ 476 (748)
..|-.+.-...+++..-+ ....+...+.++.++|..+.-. +-+.++.+|+ +++.+
T Consensus 276 ~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~~N~~P~~~----------d~d~g~~RR~-~iIPF 331 (469)
T PRK14709 276 ARIKQMTGGDTITARFMRQDFFEFVPQFKLTIVGNHKPRLR----------NVDEAARRRF-NIVPF 331 (469)
T ss_pred HHHHhhhCCCcEEeecccCCceEEEeeeEEEEEcCCCCccC----------CCCceeEeeE-EEEec
Confidence 233333333456554322 2344555788888899765332 3456888998 55555
No 329
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.19 E-value=0.047 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.3
Q ss_pred EEEECCCCccHHHHHHHHHHhCCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
++|+|+||+|||++++.+++.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 689999999999999999987643
No 330
>PRK14528 adenylate kinase; Provisional
Probab=94.14 E-value=0.049 Score=54.12 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=25.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
++++.|+||+|||++++.+++.++-.+...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 699999999999999999998876544433
No 331
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.14 E-value=0.079 Score=55.78 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=25.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
|.||+|.+|+||.+++|.++.+..-.++.
T Consensus 33 h~LLvG~~GsGr~sl~rLaa~i~~~~~~~ 61 (268)
T PF12780_consen 33 HALLVGVGGSGRQSLARLAAFICGYEVFQ 61 (268)
T ss_dssp EEEEECTTTSCHHHHHHHHHHHTTEEEE-
T ss_pred CeEEecCCCccHHHHHHHHHHHhccceEE
Confidence 99999999999999999999888655543
No 332
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.14 E-value=0.044 Score=53.00 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEECCCCccHHHHHHHHHHhCCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
++|+|+||+|||++++.+++.++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999998863
No 333
>PRK14526 adenylate kinase; Provisional
Probab=94.12 E-value=0.05 Score=55.21 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
+++|+|+||+|||++++.+++.++.....+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G 32 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTG 32 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecC
Confidence 5899999999999999999987765444333
No 334
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.06 E-value=0.073 Score=65.89 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=53.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-cEEeccCCCC---------CcccceeeeecccccceeeccceEeeccCceeeec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-AISTTGRGSS---------GVGLTAAVTSDQETGERRLEAGAMVLADRGVVCID 400 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-~~~~~g~~~~---------~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~ID 400 (748)
-+++.|.+|||||++++.+...+.. +..+.|...+ ..|+.+.++.... .....|...+..+.+++||
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l---l~~~~~~~~l~~~~vlVID 475 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWE---LRWNQGRDQLDNKTVFVLD 475 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHH---hhhccCccCCCCCcEEEEE
Confidence 4899999999999999999876533 1112121111 1122222211100 0112333345556799999
Q ss_pred CCCcCChhhHHHHHHHHhh
Q 004502 401 EFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 401 Eidk~~~~~~~~L~e~me~ 419 (748)
|..+++......|+...+.
T Consensus 476 EAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 476 EAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred CcccCCHHHHHHHHHHHHh
Confidence 9999999999999888864
No 335
>PRK02496 adk adenylate kinase; Provisional
Probab=94.02 E-value=0.05 Score=53.79 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=24.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
.++++|+||+|||++++.+++.++......
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999998876544433
No 336
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.02 E-value=0.054 Score=54.92 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.3
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
|+++|+||+|||++++.+++.++-....+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999998776544433
No 337
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.00 E-value=0.091 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=23.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
+++++|++|+|||++++++....+.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 7999999999999999999988764
No 338
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.97 E-value=0.046 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA 356 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~ 356 (748)
.|+|.|+||+|||++++.+++.++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 58999999999999999999987654
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.076 Score=51.03 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=51.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc---EEeccCCCCCc---ccc--eeeeeccccccee-eccceEeeccCceeeecC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTGRGSSGV---GLT--AAVTSDQETGERR-LEAGAMVLADRGVVCIDE 401 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~---~~~~g~~~~~~---glt--~~~~~~~~~g~~~-~~~G~l~la~~gil~IDE 401 (748)
.+.|+|++|+|||+|++.++...+.. ++..|...... ... ........+|+.. +.-......+..++++||
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 58999999999999999999987652 33332211000 000 0011111123221 111112223568999999
Q ss_pred CC-cCChhhHHHHHHHHhh
Q 004502 402 FD-KMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 402 id-k~~~~~~~~L~e~me~ 419 (748)
.. .++...+..+.+.+.+
T Consensus 107 p~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 107 PTSGLDPASRERLLELLRE 125 (157)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 86 5777888888887763
No 340
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.94 E-value=0.053 Score=52.72 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=26.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
+|.|+|.+|+|||++.+.+|+.+...++=
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D 32 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFID 32 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCccc
Confidence 79999999999999999999999876643
No 341
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.92 E-value=0.071 Score=51.21 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.++|.||+|+|||+|+|.++.+.+.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC
Confidence 4899999999999999999988754
No 342
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.87 E-value=0.084 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=23.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
||+++|++|+|||++++++....|.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 8999999999999999999999886
No 343
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.83 E-value=0.078 Score=50.34 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=50.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cEEeccCCCCCcccceeeeeccccccee-eccceEeeccCceeeecCCC-cC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRGSSGVGLTAAVTSDQETGERR-LEAGAMVLADRGVVCIDEFD-KM 405 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~~~~~glt~~~~~~~~~g~~~-~~~G~l~la~~gil~IDEid-k~ 405 (748)
.+.++|++|+|||+|++.++...+. .++..|. ...........|+.. +.-......+..++++||-. .+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 5899999999999999999998764 1222221 001111111122211 11111122366799999985 67
Q ss_pred ChhhHHHHHHHHhh
Q 004502 406 NDQDRVAIHEVMEQ 419 (748)
Q Consensus 406 ~~~~~~~L~e~me~ 419 (748)
+...+..+.+.+.+
T Consensus 102 D~~~~~~l~~~l~~ 115 (144)
T cd03221 102 DLESIEALEEALKE 115 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888864
No 344
>PLN02200 adenylate kinase family protein
Probab=93.83 E-value=0.063 Score=55.47 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=25.5
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
..|+++|+||+|||++++.+++.++-....+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 3699999999999999999999876544433
No 345
>PRK05439 pantothenate kinase; Provisional
Probab=93.82 E-value=0.1 Score=55.92 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHhcC------ccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCC
Q 004502 266 APIYTPEDLKSIKKIAER------DDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPS 339 (748)
Q Consensus 266 ~~~~~~~~~~~i~~l~~~------~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pG 339 (748)
...+|+++++.++.+... .++|--|+..|.-..-+......++.. +++.. ..+...-|.+.|+||
T Consensus 26 ~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~-fl~~~--------~~~~~~iIgIaG~~g 96 (311)
T PRK05439 26 PLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQ-FLGKN--------GQKVPFIIGIAGSVA 96 (311)
T ss_pred CCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-Hhccc--------CCCCCEEEEEECCCC
Confidence 456888888887766543 245555555444333333333333322 23310 111223688999999
Q ss_pred ccHHHHHHHHHHhCC
Q 004502 340 VAKSQLLRAIMNIAP 354 (748)
Q Consensus 340 tGKS~l~r~i~~~~~ 354 (748)
+|||++++.++..+.
T Consensus 97 sGKSTla~~L~~~l~ 111 (311)
T PRK05439 97 VGKSTTARLLQALLS 111 (311)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 346
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.80 E-value=0.24 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred EEEECCCCccHHHHHHHHHHhCCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
|.+.|.||+|||++++.+++.++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~ 25 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPN 25 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 678899999999999999998753
No 347
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.79 E-value=0.057 Score=57.55 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=41.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE-EeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI-STTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQD 409 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~-~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~ 409 (748)
-+-|+|++++|||++++.++..++.+. ....-.+|..++ + +.....+...++|||+...++..
T Consensus 195 ~~hl~G~Ss~GKTt~~~~a~Sv~G~p~~l~~sw~~T~n~l---------------e-~~a~~~nd~~l~lDE~~~~~~~~ 258 (286)
T PF06048_consen 195 GFHLYGQSSSGKTTALQLAASVWGNPDGLIRSWNSTDNGL---------------E-RTAAAHNDLPLVLDELSQADPKD 258 (286)
T ss_pred EEEEEeCCCCCHHHHHHHhhhhCcCchhhhhcchhhHHHH---------------H-HHHHHcCCcceEehhccccchhH
Confidence 467899999999999999998876654 111111111111 1 12223356789999999988765
Q ss_pred H
Q 004502 410 R 410 (748)
Q Consensus 410 ~ 410 (748)
.
T Consensus 259 ~ 259 (286)
T PF06048_consen 259 V 259 (286)
T ss_pred H
Confidence 3
No 348
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.71 E-value=0.067 Score=50.35 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.3
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
|.+.|+||+|||++++.+++.++-.++-.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 68999999999999999999876555433
No 349
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.071 Score=54.62 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred EEEECCCCccHHHHHHHHHHhCCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
|.|+||+|||||+|++.++.+...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 899999999999999999987644
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.64 E-value=0.059 Score=53.13 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=49.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC---cEEeccCCCCCcccceeeeec--cccccee-eccceEeeccCceeeecCCC-
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL---AISTTGRGSSGVGLTAAVTSD--QETGERR-LEAGAMVLADRGVVCIDEFD- 403 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~---~~~~~g~~~~~~glt~~~~~~--~~~g~~~-~~~G~l~la~~gil~IDEid- 403 (748)
-+.|+|+.|+|||+|++.++.+.+. .+...|.. .+ .+..+ ...|+.. +.-......+..++++||-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~---~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PV---YKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EE---EEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4889999999999999999998765 22322210 01 11111 1122211 11112223367899999985
Q ss_pred cCChhhHHHHHHHHhh
Q 004502 404 KMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 404 k~~~~~~~~L~e~me~ 419 (748)
.+++..+..+.+++.+
T Consensus 101 ~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 101 YLDIEQRLNAARAIRR 116 (177)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5677777777777753
No 351
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.59 E-value=0.074 Score=54.11 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=25.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
.|+++|+||+|||++++.+++.++......
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999887655443
No 352
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.55 E-value=0.16 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
.+||+||||+|||+|++.+++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988765
No 353
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.54 E-value=0.061 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=20.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
+|+++|++|+|||+|++.++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 389999999999999999987543
No 354
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.48 E-value=0.047 Score=51.97 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
+++++|+||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987764
No 355
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.47 E-value=0.2 Score=54.88 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=22.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+++.||+|+|||++++++....+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 799999999999999999888665
No 356
>PF05729 NACHT: NACHT domain
Probab=93.45 E-value=0.052 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEECCCCccHHHHHHHHHHhCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
++|.|+||+|||++++.++..+.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHH
Confidence 78999999999999999886543
No 357
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.44 E-value=0.064 Score=52.72 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-++|+|+||+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998764
No 358
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.44 E-value=0.12 Score=48.30 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=23.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.++|.|+.|+|||+++|.+++.++.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5999999999999999999998864
No 359
>PLN02459 probable adenylate kinase
Probab=93.42 E-value=0.096 Score=54.64 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=26.3
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
++++|+|+||+|||++++.+++.++-....+|
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~g 61 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATG 61 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCc
Confidence 47999999999999999999998865544443
No 360
>PRK08233 hypothetical protein; Provisional
Probab=93.38 E-value=0.066 Score=52.50 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=22.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
=|.+.|+||+|||++++.++..++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3788999999999999999998863
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.28 E-value=0.056 Score=58.11 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=22.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
+++|+|+||||||.|+.++++.+.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998874
No 362
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.26 E-value=0.093 Score=51.14 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=25.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
+++|+|.||+|||++++.+++.++..++-
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 68999999999999999999988765543
No 363
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.089 Score=50.87 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=19.4
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
.|++.|.||||||++++.++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 589999999999999999993
No 364
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.11 E-value=0.089 Score=50.24 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=26.4
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
|-+-|+||+|||++++.+++.++-.++.+|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG 32 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAG 32 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeecc
Confidence 668899999999999999999988777655
No 365
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.10 E-value=0.092 Score=56.23 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=24.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
.++++|+||+|||++++.+++.++...++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 58889999999999999999988543333
No 366
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.08 E-value=0.092 Score=42.09 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
..+|.|+.|+|||+++.++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998765
No 367
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.06 E-value=0.061 Score=54.81 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.4
Q ss_pred cccEEEECCCCccHHHHHHHHH
Q 004502 329 DINMMMVGDPSVAKSQLLRAIM 350 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~ 350 (748)
...+|++|+||+|||++++.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3479999999999999999874
No 368
>PLN02674 adenylate kinase
Probab=93.05 E-value=0.093 Score=54.34 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEecc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTG 361 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g 361 (748)
+|+|+|+||+||+++++.+++.++-....+|
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~his~G 63 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCHLATG 63 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEchh
Confidence 7999999999999999999998865444333
No 369
>PRK14529 adenylate kinase; Provisional
Probab=93.05 E-value=0.075 Score=54.30 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
+|+|+|+||+|||++++.+++.+....
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 689999999999999999999886543
No 370
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.03 E-value=1.2 Score=49.55 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=27.0
Q ss_pred cccHHHHHHHHhcc----cCCCCCHHHHHHHHHHHHhcCCEEE
Q 004502 701 LITITELEEIVNTG----MDAHYSRAEITFLLEKLQDENRVMI 739 (748)
Q Consensus 701 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~ 739 (748)
.+++++|.+.+-.+ .-...+..||..+-.-|+.+|.+.+
T Consensus 448 d~s~~eL~e~Y~k~C~~~~I~~ld~tEF~~i~~ilet~gil~l 490 (529)
T KOG2227|consen 448 DVSIAELYEAYLKACQKREIAPLDRTEFLSICDILETQGILRL 490 (529)
T ss_pred cccHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHhhhHHHH
Confidence 46677776655442 2246788888888888888887765
No 371
>PRK14527 adenylate kinase; Provisional
Probab=93.03 E-value=0.074 Score=52.98 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-++++|+||+|||++++.+++..+.
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4999999999999999999977654
No 372
>PRK13948 shikimate kinase; Provisional
Probab=92.99 E-value=0.1 Score=51.62 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=25.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
+|+|+|.+|+|||++++.+++.++..+.
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~i 39 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFI 39 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 7999999999999999999998877654
No 373
>PRK13946 shikimate kinase; Provisional
Probab=92.91 E-value=0.11 Score=51.39 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=26.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
+|+|+|.||+|||++++.+++.++..++-+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 799999999999999999999987665433
No 374
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.84 E-value=0.1 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.|+||.|+|||+|+|+++.++++
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4889999999999999999987753
No 375
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.80 E-value=0.15 Score=55.76 Aligned_cols=25 Identities=16% Similarity=0.466 Sum_probs=23.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
|+|++|++|+|||++++++....|.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC
Confidence 8999999999999999999988775
No 376
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.74 E-value=0.027 Score=56.38 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.3
Q ss_pred cEEEECCCCccHHHHHHHHHHh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
-+.++||+|+|||+|+|.+..+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999988653
No 377
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.72 E-value=0.19 Score=53.54 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-|.|.|++|+|||++++.+..++.
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999988774
No 378
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.71 E-value=0.083 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-++|+||+|+|||++++.+++..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 3899999999999999999997765
No 379
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.69 E-value=0.099 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCc
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLA 356 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~ 356 (748)
+.|+||+|+|||+|++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6899999999999999999987653
No 380
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.61 E-value=0.68 Score=49.28 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=42.4
Q ss_pred cCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhhcccc
Q 004502 393 DRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 393 ~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
..-|++||++|+|+....++|+..+|+= |.+ ..|+.|.|+. .+.+.+.||+
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~--------------~lLpTI~SRc- 155 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN--------------KVLPTIKSRT- 155 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hCchHHHHcc-
Confidence 4469999999999999999999999853 222 3455555664 4899999999
Q ss_pred EEEEe
Q 004502 472 LLFIV 476 (748)
Q Consensus 472 li~~~ 476 (748)
-++.+
T Consensus 156 q~i~f 160 (290)
T PRK07276 156 QIFHF 160 (290)
T ss_pred eeeeC
Confidence 44444
No 381
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.49 E-value=0.1 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=22.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-+.|+|++|+|||+|++.+++.++
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 499999999999999999999887
No 382
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.43 E-value=0.14 Score=51.45 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=25.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
-+++.|.||+|||++++.++..++......
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~~~~~ 34 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDIVLS 34 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEEeh
Confidence 589999999999999999999876544333
No 383
>PRK04040 adenylate kinase; Provisional
Probab=92.35 E-value=0.13 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=22.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999999885
No 384
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.23 E-value=0.1 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHHhC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
++++|.||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 385
>PRK01184 hypothetical protein; Provisional
Probab=92.19 E-value=0.15 Score=50.36 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=20.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
-|+|+|+||+|||++++ +++..+-.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~ 28 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPV 28 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcE
Confidence 48899999999999998 455554433
No 386
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.13 E-value=0.12 Score=55.81 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-+.|+||+|||||+++|.+|.+-..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4889999999999999999977643
No 387
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=92.11 E-value=0.1 Score=59.05 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.8
Q ss_pred CcccEEEECCCCccHHHHHHHHHHhCCC
Q 004502 328 GDINMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 328 g~i~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
..-|+|++||+|||||.|+|.++.++|-
T Consensus 460 ~g~~LLItG~sG~GKtSLlRvlggLWp~ 487 (659)
T KOG0060|consen 460 SGQNLLITGPSGCGKTSLLRVLGGLWPS 487 (659)
T ss_pred CCCeEEEECCCCCchhHHHHHHhccccc
Confidence 3348999999999999999999999873
No 388
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.09 E-value=0.096 Score=51.94 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=22.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-|+|.|.||+|||++++.+++.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3789999999999999999998854
No 389
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.03 E-value=0.11 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.0
Q ss_pred EEEECCCCccHHHHHHHHHHh
Q 004502 332 MMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~ 352 (748)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 390
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.94 E-value=0.12 Score=55.37 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=53.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecc--ccccee-eccceE-eeccCceeeecCCCcCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQ--ETGERR-LEAGAM-VLADRGVVCIDEFDKMN 406 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~--~~g~~~-~~~G~l-~la~~gil~IDEidk~~ 406 (748)
.+.|+|+-|.|||+|+-.....+|..-.... .--.+...+.... ..|+.. +.+-+. ..++--|+|+|||.--+
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~---HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~VtD 143 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPGERKRRL---HFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVTD 143 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCccccccc---cHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeecC
Confidence 4999999999999999999999886321000 0000111000000 001110 011111 12244699999997665
Q ss_pred hhh---HHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCC
Q 004502 407 DQD---RVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY 447 (748)
Q Consensus 407 ~~~---~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~ 447 (748)
..+ +..|+++|= ...++++||+|..+
T Consensus 144 I~DAMiL~rL~~~Lf---------------~~GV~lvaTSN~~P 172 (367)
T COG1485 144 IADAMILGRLLEALF---------------ARGVVLVATSNTAP 172 (367)
T ss_pred hHHHHHHHHHHHHHH---------------HCCcEEEEeCCCCh
Confidence 554 344444442 12478999999764
No 391
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.91 E-value=0.21 Score=53.80 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=23.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
+++++|++|+|||++++++...+|.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCc
Confidence 8999999999999999999988875
No 392
>PF13479 AAA_24: AAA domain
Probab=91.90 E-value=0.12 Score=52.46 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=22.2
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
+.+||+|+||+|||+++..+ |+.+++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id 30 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFID 30 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEE
Confidence 47999999999999998877 6665553
No 393
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.79 E-value=0.11 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEECCCCccHHHHHHHHHHhCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
|+|+|.||+|||++++.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998763
No 394
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.77 E-value=0.12 Score=46.76 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.4
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
.|+++|.||+|||+|++++.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999985
No 395
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.77 E-value=0.1 Score=52.40 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-+.|+|.+|+|||++++.++..+.
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 396
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.75 E-value=0.25 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=22.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
+++++|++|+|||++++++....+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999998864
No 397
>PRK04182 cytidylate kinase; Provisional
Probab=91.74 E-value=0.18 Score=49.26 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
.|+|.|.||+|||++++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEe
Confidence 4899999999999999999998865544
No 398
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.73 E-value=0.12 Score=49.38 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred EECCCCccHHHHHHHHHHhCCCcE
Q 004502 334 MVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 334 L~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
|+|+||+|||++++.+++.++-..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~ 24 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH 24 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcce
Confidence 689999999999999999875443
No 399
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.65 E-value=0.14 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.7
Q ss_pred ccEEEECCCCccHHHHHHHHHH
Q 004502 330 INMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
++++++|+||+|||+|++++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 400
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.61 E-value=0.17 Score=51.03 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=18.8
Q ss_pred cEEEECCCCccHHHHHHHHHHh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
-++++|+||+|||+++..++..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999877643
No 401
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.59 E-value=0.14 Score=51.13 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHHhC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
|.|.|++|+|||++++.++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 402
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.56 E-value=0.18 Score=48.85 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=24.1
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
|.+.|+||+|||++++.+++.++-.++-
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 8899999999999999999987655443
No 403
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.56 E-value=0.13 Score=50.39 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=22.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.|+|+|+||+|||++++.+++.+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999988764
No 404
>PRK06547 hypothetical protein; Provisional
Probab=91.55 E-value=0.19 Score=49.35 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-|++.|++|+|||++++.+++.++
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588889999999999999998754
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=91.54 E-value=0.12 Score=59.63 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=24.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA 356 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~ 356 (748)
++|+.|++|+|||+|+|+++.++|-+
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccC
Confidence 79999999999999999999999864
No 406
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.43 E-value=0.17 Score=49.79 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.++|++|+|||++++.++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4899999999999999999998765
No 407
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=91.38 E-value=0.15 Score=57.18 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=24.2
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCC
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.|+|+.||.|||||.|.|.+..++|-
T Consensus 509 ~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 509 MHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred ceEEEECCCCccHHHHHHHHhccCcc
Confidence 48999999999999999999999875
No 408
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.30 E-value=0.13 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=24.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCc
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLA 356 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~ 356 (748)
++++.|++|+|||++++++....|..
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred EEEEECCCccccchHHHHHhhhcccc
Confidence 89999999999999999999988875
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.28 E-value=0.086 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
.+.|+|++|+|||+|++.++...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999987655
No 410
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.28 E-value=0.22 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
+++|+||.|+|||+|++.+.+....
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 7999999999999999999998844
No 411
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.17 E-value=0.4 Score=55.00 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=25.3
Q ss_pred CCCCCceEEeeeeccccc--ccCCCCEEEEEEEEee
Q 004502 202 PGQLPRTVDVIVEDDLVD--SCKPGDRVAIVGTYKA 235 (748)
Q Consensus 202 ~G~~Prsi~V~l~~dLv~--~~~pGd~V~v~Gi~~~ 235 (748)
.|.+|..-+|++.-.+|. .++.||.| +|.++.
T Consensus 312 ~~y~~~~~Dvyvs~~qirr~~Lr~Gd~v--~G~vr~ 345 (672)
T PRK12678 312 SGYLPGPNDVYVSMNQVRKNGLRKGDAV--TGAVRA 345 (672)
T ss_pred CCCCCCCCCeeeCHHHHHHcCCCCCCEE--EEeecC
Confidence 367788888999888886 46899985 598875
No 412
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.11 E-value=0.17 Score=48.34 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=19.2
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
.|+++|+||+|||+|+..+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988875
No 413
>PRK13808 adenylate kinase; Provisional
Probab=91.09 E-value=0.21 Score=54.05 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=25.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
+|+|+||||+|||++++.+++.++..+..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 599999999999999999999886544433
No 414
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.06 E-value=0.19 Score=50.72 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=22.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-|.|.|++|+|||+|++.+++.++
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999873
No 415
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.97 E-value=0.32 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
|+|+.|++|+|||++++++....
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998876
No 416
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.96 E-value=0.18 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=18.9
Q ss_pred ccEEEECCCCccHHHHHHHHHH
Q 004502 330 INMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
++|+++|+||+|||+|+..+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999987653
No 417
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=90.93 E-value=0.18 Score=49.22 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.2
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
+|+|+|+||+|||+|++.+..
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999988874
No 418
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.90 E-value=0.2 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEECCCCccHHHHHHHHHHhCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
+.|.||+|||||+++|.||.+-.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 77999999999999999997653
No 419
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=90.89 E-value=0.19 Score=46.92 Aligned_cols=23 Identities=43% Similarity=0.794 Sum_probs=20.2
Q ss_pred ccEEEECCCCccHHHHHHHHHHh
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
++|+++|+||+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999888653
No 420
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.88 E-value=0.17 Score=48.17 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=19.1
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
.|+++|+||+|||+|++.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998864
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.84 E-value=0.42 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.1
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
-++|.||.|+|||++++.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 489999999999999999973
No 422
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.82 E-value=0.4 Score=62.34 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=50.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-----cEEeccCCCC--------Ccccceeeeeccccc-ceeeccceEeeccCce
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-----AISTTGRGSS--------GVGLTAAVTSDQETG-ERRLEAGAMVLADRGV 396 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-----~~~~~g~~~~--------~~glt~~~~~~~~~g-~~~~~~G~l~la~~gi 396 (748)
-++|.|.||||||++++.+...+.. ...+.|...+ ..|+.+.++...... +.....|......+.+
T Consensus 986 ~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~A~TI~s~L~~~~~~~~~~~~~~~~~~l 1065 (1747)
T PRK13709 986 FTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTL 1065 (1747)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcchhhHHHHhcccccccccccCCCCCCcE
Confidence 6899999999999999998776421 1111111111 123322211111000 0000111122234579
Q ss_pred eeecCCCcCChhhHHHHHHHHhh
Q 004502 397 VCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 397 l~IDEidk~~~~~~~~L~e~me~ 419 (748)
++|||+.+++......|+...+.
T Consensus 1066 lIVDEaSMv~~~~m~~Ll~~~~~ 1088 (1747)
T PRK13709 1066 FLLDESSMVGNTDMARAYALIAA 1088 (1747)
T ss_pred EEEEccccccHHHHHHHHHhhhc
Confidence 99999999999988888887663
No 423
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.81 E-value=0.18 Score=49.55 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=17.1
Q ss_pred EEEECCCCccHHHHHHHHHH
Q 004502 332 MMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~ 351 (748)
+|+.|+||+|||+|+..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999876544
No 424
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=90.76 E-value=0.2 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.5
Q ss_pred cEEEECCCCccHHHHHHHHHHh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
+|+++|+||+|||+|+..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999987643
No 425
>PRK08356 hypothetical protein; Provisional
Probab=90.74 E-value=0.27 Score=49.14 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=19.3
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
-++|+|+||+|||++++++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999965
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.73 E-value=0.18 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999987664
No 427
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.70 E-value=0.16 Score=50.69 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.7
Q ss_pred EEEECCCCccHHHHHHHHHHhCCC
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
|.+.|+||+|||++++.++..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999998863
No 428
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.68 E-value=0.19 Score=48.70 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=21.0
Q ss_pred cccEEEECCCCccHHHHHHHHHHh
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
.+.++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 347999999999999999998764
No 429
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.61 E-value=0.19 Score=49.27 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998763
No 430
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=90.54 E-value=0.21 Score=48.09 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred ccEEEECCCCccHHHHHHHHHH
Q 004502 330 INMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
+.|+++|+||+|||+|++.+..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~ 22 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT 22 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998865
No 431
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.53 E-value=0.36 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
-++|+|++|+|||+|+.++....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999887643
No 432
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.50 E-value=0.21 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.0
Q ss_pred cccEEEECCCCccHHHHHHHHHHh
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
.+.|+++|+||+|||+|++.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 348999999999999999988764
No 433
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.49 E-value=0.37 Score=47.61 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-+.+.||+|||||+|+..++.+.++
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCc
Confidence 5889999999999999999987654
No 434
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=90.48 E-value=0.22 Score=47.51 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.1
Q ss_pred ccEEEECCCCccHHHHHHHHHH
Q 004502 330 INMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
..|+++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999887764
No 435
>PLN02165 adenylate isopentenyltransferase
Probab=90.48 E-value=0.26 Score=53.14 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
.++|+||+|+|||+|+..+++.++..+..
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIs 73 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIIN 73 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence 58999999999999999999998754433
No 436
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=90.47 E-value=0.21 Score=48.66 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=19.5
Q ss_pred cEEEECCCCccHHH-HHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQ-LLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~-l~r~i~~~~~ 354 (748)
++++.|++|+|||. ++..+...+.
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHhc
Confidence 79999999999999 6666666544
No 437
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.47 E-value=0.2 Score=48.31 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.0
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
+|+++|+||+|||+|++.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999988764
No 438
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=90.46 E-value=0.21 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.1
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
+++++|+||+|||+|++.+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998764
No 439
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.37 E-value=0.23 Score=49.34 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-+.|+||+|+|||+|++.+.+..|.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4899999999999999999887764
No 440
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=90.31 E-value=0.23 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.9
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
.|+++|+||+|||+|++.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988864
No 441
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.31 E-value=0.22 Score=44.70 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=18.4
Q ss_pred cEEEECCCCccHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIM 350 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~ 350 (748)
-++|+||+|+|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999875
No 442
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.31 E-value=0.22 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.7
Q ss_pred ccEEEECCCCccHHHHHHHHHH
Q 004502 330 INMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
+.|+++|+||+|||+|+..+..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 3799999999999999988865
No 443
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.27 E-value=0.21 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999987653
No 444
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=90.26 E-value=0.98 Score=49.57 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.4
Q ss_pred cccEEEECCCCccHHHHHHHHHHhCCC
Q 004502 329 DINMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 329 ~i~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
+..|.|+||.|+|||+|++.+..-+.+
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P 639 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDP 639 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCC
Confidence 347999999999999999988765544
No 445
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.26 E-value=0.21 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999987653
No 446
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.25 E-value=0.26 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.|+|++|+|||+|++.++...+.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988754
No 447
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.24 E-value=0.21 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999997653
No 448
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.22 E-value=0.21 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998764
No 449
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=90.19 E-value=0.22 Score=47.81 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=19.6
Q ss_pred cEEEECCCCccHHHHHHHHHHh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
+|+++|++|+|||+|+..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 5899999999999999988764
No 450
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.17 E-value=0.22 Score=50.36 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999987653
No 451
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.15 E-value=0.22 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987654
No 452
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=90.14 E-value=0.31 Score=49.70 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=25.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEec
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~ 360 (748)
.|.|.||+|+|||++++.+++.++-.+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 588999999999999999998876554433
No 453
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.14 E-value=0.67 Score=49.98 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=25.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
+|.|+|.||+|||++++.+++.++..++
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 7999999999999999999999877665
No 454
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.05 E-value=0.44 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIA 353 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~ 353 (748)
+++++|++|+|||++++++....
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 89999999999999999998753
No 455
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.03 E-value=0.22 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+||+|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999987653
No 456
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.02 E-value=0.23 Score=48.09 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=23.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.|+|++|+|||+|++.++...+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999988765
No 457
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=89.96 E-value=0.94 Score=47.71 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=58.0
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeeecCCCcCChhhH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDR 410 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~IDEidk~~~~~~ 410 (748)
-|+++|||+||||.|+.+|++..|..-.+.... ..+.+. -..++-+++.||. .|..+..
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~n----------------~nF~f~----d~~~k~l~~weE~-~~~~~~v 173 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWNN----------------NNFPFQ----DCFNKRLIWWEEP-NMYPDEV 173 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECTT----------------TCCCCC----CCCCECEEECTCG-GCCTTCH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccCC----------------CCCChh----hhhhccEEEeccc-CccHHHH
Confidence 599999999999999999999887632222111 011110 0112346677776 5566667
Q ss_pred HHHHHHHhhceEEeeccc-eeEEeccceeEeeecCCC
Q 004502 411 VAIHEVMEQQTVTIAKAG-IHASLNARCSVVAAANPI 446 (748)
Q Consensus 411 ~~L~e~me~~~i~i~k~g-~~~~l~~~~~iiaa~Np~ 446 (748)
+.+...+.-..+.+.... ....+. ++-+|.++|-.
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~~-~tPviItsn~d 209 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEELE-RTPVIITSNND 209 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEEE-EEEEEEEECCE
T ss_pred HHHHHHhCCCceEeecccCCceEec-CCceEEEeccc
Confidence 777777777788775433 334443 45566677754
No 458
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.96 E-value=0.24 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.7
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 459
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=89.96 E-value=0.22 Score=47.36 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.8
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
+|+++|+||+|||+|++.+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~ 21 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH 21 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc
Confidence 489999999999999998864
No 460
>PRK13975 thymidylate kinase; Provisional
Probab=89.94 E-value=0.26 Score=49.09 Aligned_cols=25 Identities=8% Similarity=0.052 Sum_probs=22.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
-|.+.|++|+|||++++.+++.+..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998853
No 461
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=89.89 E-value=0.36 Score=47.27 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.2
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+|+.|+||+|||+++..++..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC
Confidence 5899999999999999999887654
No 462
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=89.88 E-value=0.23 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987654
No 463
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=89.84 E-value=0.4 Score=61.61 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=48.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC-----cEEeccCCCC--------Ccccceeeeecccc-cceeeccceEeeccCce
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL-----AISTTGRGSS--------GVGLTAAVTSDQET-GERRLEAGAMVLADRGV 396 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~-----~~~~~g~~~~--------~~glt~~~~~~~~~-g~~~~~~G~l~la~~gi 396 (748)
.++|.|.||||||++++.+...+.. ...+.|...+ ..|+.+.++..... .......+.-....+.+
T Consensus 854 ~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi~A~TIasfL~~~~~~~~~~~~~~~~~~l 933 (1623)
T PRK14712 854 FTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTL 933 (1623)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHhCchHhhHHHHhccccchhhcccCCCCCCcE
Confidence 5899999999999998877654311 1112111111 11222211111000 00000111111234679
Q ss_pred eeecCCCcCChhhHHHHHHHHhh
Q 004502 397 VCIDEFDKMNDQDRVAIHEVMEQ 419 (748)
Q Consensus 397 l~IDEidk~~~~~~~~L~e~me~ 419 (748)
++|||..+++..+...|+..++.
T Consensus 934 lIVDEASMV~~~~m~~ll~~~~~ 956 (1623)
T PRK14712 934 FLLDESSMVGNTDMARAYALIAA 956 (1623)
T ss_pred EEEEccccccHHHHHHHHHhhhh
Confidence 99999999999988888888764
No 464
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=89.83 E-value=0.25 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=19.3
Q ss_pred ccEEEECCCCccHHHHHHHHHH
Q 004502 330 INMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
++|+++|++|+|||+|+.++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999988763
No 465
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=89.82 E-value=0.23 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999987654
No 466
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=89.80 E-value=0.26 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.0
Q ss_pred ccEEEECCCCccHHHHHHHHHHh
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
+.|+++|++|+|||+|++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999988753
No 467
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.79 E-value=0.28 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.|+|++|+|||+|++.++...+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 5889999999999999999987653
No 468
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=89.78 E-value=0.26 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.7
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
-|+++|+||+|||+|++++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998864
No 469
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.77 E-value=0.26 Score=48.46 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.++|++|+|||+|++.++...+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 5899999999999999999987653
No 470
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=89.75 E-value=0.24 Score=50.12 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987654
No 471
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.72 E-value=0.25 Score=49.76 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=21.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+||+|+|||+|++.++.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987654
No 472
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=89.70 E-value=1.4 Score=45.33 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=45.6
Q ss_pred cCceeeecCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccc-eeEeeecCCCCCccCCCCCccccCCCChhhhcccc
Q 004502 393 DRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNAR-CSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFD 471 (748)
Q Consensus 393 ~~gil~IDEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~-~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFd 471 (748)
..-|++|+++++|.....++|+..+|+- |.+ ..++.|.|+. .+++.+.||+
T Consensus 89 ~~KViII~~ae~mt~~AANALLKtLEEP-------------P~~t~fILit~~~~--------------~LLpTIrSRC- 140 (263)
T PRK06581 89 GYKVAIIYSAELMNLNAANSCLKILEDA-------------PKNSYIFLITSRAA--------------SIISTIRSRC- 140 (263)
T ss_pred CcEEEEEechHHhCHHHHHHHHHhhcCC-------------CCCeEEEEEeCChh--------------hCchhHhhce-
Confidence 4459999999999999999999999963 222 3455666664 4999999999
Q ss_pred EEEEecCCCChh
Q 004502 472 LLFIVLDQMDPD 483 (748)
Q Consensus 472 li~~~~d~~~~~ 483 (748)
..+.+ ..++..
T Consensus 141 q~i~~-~~p~~~ 151 (263)
T PRK06581 141 FKINV-RSSILH 151 (263)
T ss_pred EEEeC-CCCCHH
Confidence 55555 334443
No 473
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.67 E-value=0.25 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=23.6
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
|++++|+||+|||+|++.++...+.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC
Confidence 8999999999999999999998875
No 474
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=89.65 E-value=0.81 Score=52.41 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=25.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcEEe
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAIST 359 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~~~ 359 (748)
-++|+|+-|+|||++...+..++++.-.+
T Consensus 232 ~~~l~G~G~nGKstf~~li~~llG~~n~~ 260 (517)
T COG3378 232 LFWLYGPGGNGKSTFVDLISNLLGRYNVT 260 (517)
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccchhc
Confidence 58999999999999999999999885443
No 475
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=89.64 E-value=0.24 Score=50.25 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.4
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999987654
No 476
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.59 E-value=0.41 Score=48.60 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.1
Q ss_pred cEEEECCCCccHHHHHHHHHHh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
-+++.|+||+|||+++..++..
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999887754
No 477
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=89.59 E-value=0.26 Score=47.35 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=17.7
Q ss_pred cEEEECCCCccHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIM 350 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~ 350 (748)
+|+++|+||+|||+|+..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 69999999999999996664
No 478
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=89.58 E-value=0.27 Score=46.48 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.7
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
.|+++|+||+|||+|+..+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998864
No 479
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.53 E-value=0.28 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
-++|+||+|+|||+|++.+.+..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCC
Confidence 488899999999999999987644
No 480
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=89.52 E-value=0.26 Score=50.14 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999997654
No 481
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=89.51 E-value=0.26 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987653
No 482
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=89.50 E-value=0.24 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.3
Q ss_pred cEEEECCCCccHHHHHHHHHHh
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~ 352 (748)
+|+++|+||+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 4899999999999999888653
No 483
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.48 E-value=0.27 Score=48.11 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.|+|++|+|||+|++.++...+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999987653
No 484
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=89.46 E-value=0.27 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 599999999999999999987653
No 485
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=89.45 E-value=0.24 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.7
Q ss_pred EEEECCCCccHHHHHHHHHHh
Q 004502 332 MMMVGDPSVAKSQLLRAIMNI 352 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~ 352 (748)
|.++|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999988653
No 486
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.43 E-value=0.33 Score=49.60 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=18.6
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
-+++.|+||+|||+++..++.
T Consensus 25 i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988765
No 487
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=89.38 E-value=0.3 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.4
Q ss_pred ccEEEECCCCccHHHHHHHHHH
Q 004502 330 INMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~ 351 (748)
++|+++|+||+|||+|+..+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4799999999999999987765
No 488
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=89.37 E-value=0.49 Score=49.30 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHhcCcc------HHHHHHHcccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCC
Q 004502 266 APIYTPEDLKSIKKIAERDD------TFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPS 339 (748)
Q Consensus 266 ~~~~~~~~~~~i~~l~~~~~------~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pG 339 (748)
...+++++++.++-+....+ +|.-|+..+.-.+.-.+..-..++..|... ..++..=|-+.|+||
T Consensus 22 ~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~---------~~~~pfIIgiaGsva 92 (283)
T COG1072 22 PLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTN---------NQQRPFIIGIAGSVA 92 (283)
T ss_pred ccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCCCCEEEEeccCcc
Confidence 34578888888887776654 444444444444444444444444443311 112223588999999
Q ss_pred ccHHHHHHHHHHhCCC
Q 004502 340 VAKSQLLRAIMNIAPL 355 (748)
Q Consensus 340 tGKS~l~r~i~~~~~~ 355 (748)
+|||++++.++.++.+
T Consensus 93 vGKST~ar~L~~ll~~ 108 (283)
T COG1072 93 VGKSTTARILQALLSR 108 (283)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999988755
No 489
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.36 E-value=0.26 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987654
No 490
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.36 E-value=0.26 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987664
No 491
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=89.35 E-value=0.28 Score=47.06 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.2
Q ss_pred cEEEECCCCccHHHHHHHHHH
Q 004502 331 NMMMVGDPSVAKSQLLRAIMN 351 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~ 351 (748)
+|+++|+||+|||+|++.+..
T Consensus 5 ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999998864
No 492
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.45 Score=53.40 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=23.9
Q ss_pred ccEEEECCCCccHHHHHHHHHHhCCCcE
Q 004502 330 INMMMVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 330 i~iLL~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
+.+||.||||+|||.||-.++..+.-++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPF 566 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPF 566 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCe
Confidence 3799999999999999998888776544
No 493
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.34 E-value=0.28 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987654
No 494
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=89.34 E-value=0.27 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999987653
No 495
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=89.32 E-value=0.26 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=21.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987654
No 496
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=89.31 E-value=0.51 Score=55.18 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=36.9
Q ss_pred ccCcccChHHHHHHHHHHHhCCcccccCCCccccCcccEEEECCCCccHHHHHHHHHHhCCC
Q 004502 294 LAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 294 i~p~i~G~~~~K~aill~l~gg~~~~~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
..|..+-...+-+ +|..++-. +.+....|+|+|.||+|||++++.+++.+..
T Consensus 367 ~pP~~f~rpeV~~-iL~~~~~~---------r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVA-ELRRTYPP---------RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHH-HHHHHhcc---------ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4566666666555 55555533 2223336999999999999999999998754
No 497
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.31 E-value=0.28 Score=49.99 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=21.3
Q ss_pred cEEEECCCCccHHHHHHHHHHhCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAP 354 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~ 354 (748)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987653
No 498
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.31 E-value=0.51 Score=53.33 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=24.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCCcE
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPLAI 357 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~~~ 357 (748)
=+||+||+|+|||+.++.++++++..+
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 389999999999999999999988643
No 499
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.31 E-value=0.28 Score=48.17 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred cEEEECCCCccHHHHHHHHHHhCCC
Q 004502 331 NMMMVGDPSVAKSQLLRAIMNIAPL 355 (748)
Q Consensus 331 ~iLL~G~pGtGKS~l~r~i~~~~~~ 355 (748)
.+.|+|++|+|||+|++.++...+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999987653
No 500
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.30 E-value=0.43 Score=47.02 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=21.8
Q ss_pred EEEECCCCccHHHHHHHHHHhCCCcEE
Q 004502 332 MMMVGDPSVAKSQLLRAIMNIAPLAIS 358 (748)
Q Consensus 332 iLL~G~pGtGKS~l~r~i~~~~~~~~~ 358 (748)
|.|+|.||+|||++++.+++ .+-.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i 27 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI 27 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE
Confidence 68999999999999999998 544443
Done!