Query 004502
Match_columns 748
No_of_seqs 327 out of 3211
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 17:44:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004502.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1811-1815//hhsearch_pdb/004502hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 1.0 1 1 820.4 38.8 580 10-641 3-593 (595)
2 3f8t_A Predicted ATPase involv 1.0 1 1 600.1 28.8 383 182-670 110-502 (506)
3 1ltl_A DNA replication initiat 1.0 1 1 410.0 28.7 271 4-292 7-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 1.0 1 1 385.8 23.9 255 1-262 1-267 (268)
5 3nbx_X ATPase RAVA; AAA+ ATPas 1.0 1 1 206.0 20.6 267 285-633 11-284 (500)
6 2r44_A Uncharacterized protein 1.0 1 1 203.7 30.3 276 284-636 15-298 (331)
7 1g8p_A Magnesium-chelatase 38 1.0 1 1 194.3 22.8 264 296-637 24-324 (350)
8 3k1j_A LON protease, ATP-depen 1.0 1 1 178.5 15.7 241 296-634 41-374 (604)
9 3hws_A ATP-dependent CLP prote 1.0 1 1 143.9 7.7 260 290-620 9-327 (363)
10 1um8_A ATP-dependent CLP prote 1.0 1 1 142.9 14.1 272 288-630 13-360 (376)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=820.38 Aligned_cols=580 Identities=38% Similarity=0.587 Sum_probs=526.1
Q ss_pred HHHHHHHHHHCCH-------HHHHHHHHHHHCCCCEEEEECHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999882662-------269999999985994999953137310887578996698999999999999999950943
Q 004502 10 ERKREFYDFLELS-------IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPK 82 (748)
Q Consensus 10 ~~~~~f~~Fl~~~-------~Y~~~i~~~~~~~~~~l~Id~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~~~~ 82 (748)
++.+.|++||+++ +|+++|++|+..++.+|.||++||..|+++||+.|+++|.+++++|+.|+++++....|+
T Consensus 3 ~~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 82 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPT 82 (595)
T ss_dssp CHHHHHHHHHHHCCTTTTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 79999999998612358972499999999974995899996997634999999999798999999999999999863625
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECC--CCCEEEEEEE-CCCCCCC
Q ss_conf 325786289986478766313655677457885899978999943652158778886259--9961110121-3567877
Q 004502 83 YLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPT--TGSFLTREYR-DITSNTG 159 (748)
Q Consensus 83 ~~~~~~~i~v~i~~~~~~~~~~~r~L~s~~igkLV~v~GiV~r~S~V~p~l~~a~f~C~~--Cg~~~~~~~~-~~~~~~~ 159 (748)
+......++++|.|+| ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.|.. ||+....+.. ...+.+.
T Consensus 83 ~~~~~~~~~v~~~~~~--~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~ 160 (595)
T 3f9v_A 83 YQRDIEKVHVRIVGIP--RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLE 160 (595)
T ss_dssp GTTTCCCCCCCEECCS--CEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCC
T ss_pred HHHCCCEEEEEEECCC--CCCCHHHCCHHHCCCEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCC
T ss_conf 5503663999995798--87775445443289289999999993677889999999834778997899984145678655
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 78887788989999806875282156200489731278889999988358866603332356999889999897651899
Q 004502 160 VPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGK 239 (748)
Q Consensus 160 ~p~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~I~iQE~~e~~~~g~~Prsi~v~l~~dLv~~~~pGd~V~v~Gi~~~~~~~ 239 (748)
.|. .||.|...| +|.+.++.|.|+|||+|+|||+|+.+|.|++||+++|+|++||||.|+|||+|.|+||++..+..
T Consensus 161 ~p~--~C~~C~~~~-~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~ 237 (595)
T 3f9v_A 161 MPT--ICPKCGKPG-QFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDS 237 (595)
T ss_dssp CCS--SCTTTCCCS-EEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSS
T ss_pred CCC--CCCCCCCCC-CEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 887--698888989-66883167646006899998365658999978658999803532660268899999999733455
Q ss_pred C-CCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8-886551069999982133332357899999899999999932720999998700585657299999999999479200
Q 004502 240 S-KGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEK 318 (748)
Q Consensus 240 ~-~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~i~~~l~~si~p~i~G~e~~K~aill~l~gg~~~ 318 (748)
. +....++|++|++|++|+...+......+++++++.+.++++.+++|+.+..+++|.|+|++.+|++++++++||..+
T Consensus 238 ~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~ 317 (595)
T 3f9v_A 238 PVKRGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPK 317 (595)
T ss_dssp TTSCTTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCE
T ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 55578763389999987403333334457799999999999760928999999853524238399999999998589755
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEECCCCCCEEECCCEEEECCCCEEE
Q ss_conf 14898433576118998799731789999999869980896057887766410035304346413004617621686156
Q 004502 319 NLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVC 398 (748)
Q Consensus 319 ~~~~g~~~rg~i~iLlvG~pGtGKS~llk~i~~~~~~~~~~~g~~~s~~glt~~~~~~~~~g~~~~e~g~l~la~~Gi~~ 398 (748)
..++ .+.|+++|+||+||||||||++++++++.+++..++.+.+.+..++++...++..+|.+..++|++.+|++||||
T Consensus 318 ~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~ 396 (595)
T 3f9v_A 318 VLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAV 396 (595)
T ss_dssp ETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEEC
T ss_pred CCCC-CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCEE
T ss_conf 5667-776777614787797067999999999867876444787666456601011055430001468706764789488
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCEEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 24878699566789999976053886015646872364038610178887557878964468999555501348999348
Q 004502 399 IDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLD 478 (748)
Q Consensus 399 IDEidk~~~~~~~~L~e~me~~~isi~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFDlif~l~d 478 (748)
|||+++|+++.+++|+++||++.+++.++|....+++++++|||+||..|+|++.+++.+|+.++++|+||||++|++.|
T Consensus 397 IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~ 476 (595)
T 3f9v_A 397 IDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKD 476 (595)
T ss_dssp CTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECC
T ss_pred EEHHHHCCHHHHHHHHHHHHCCEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCCCHHCCCCCHHHHHHCEEEEEECC
T ss_conf 30134489867543689986887997138957895475499997388677447666723206799789854709999379
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99966768999999984211456799998778888888887556520367765310124333368767777999999999
Q 004502 479 QMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYI 558 (748)
Q Consensus 479 ~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~kyi 558 (748)
.++.+ +..+++|++..|.... ..+.++.+.|++|+
T Consensus 477 ~~~~e-~~~i~~~il~~~~~~~--------------------------------------------~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 477 QPGEQ-DRELANYILDVHSGKS--------------------------------------------TKNIIDIDTLRKYI 511 (595)
T ss_dssp TTHHH-HHHHHHHHHTTTCCCS--------------------------------------------SSSTTCCTTTHHHH
T ss_pred CCCHH-HHHHHHHHHHHHHCCC--------------------------------------------CCCCCCHHHHHHHH
T ss_conf 99878-9999999999852333--------------------------------------------45679999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99871299878999999999999998305688788998656703464699999999971199975698899999998886
Q 004502 559 HYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFA 638 (748)
Q Consensus 559 ~~ar~~~~P~l~~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRls~A~Akl~l~~~V~~~Dv~~Ai~l~~~s 638 (748)
.|||+.++|.++++|.+.|.++|..+|+...... ..++++|+|+|++++|+|+|+|++++++.|+.+|+.+|++|++.|
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~-~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETP-DSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCS-SSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999747898899999999999999997632377-764450589999999999999997194988899999999999999
Q ss_pred HHH
Q ss_conf 211
Q 004502 639 IYH 641 (748)
Q Consensus 639 ~~~ 641 (748)
+.+
T Consensus 591 l~~ 593 (595)
T 3f9v_A 591 LES 593 (595)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 985
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=1.00 E-value=1 Score=600.10 Aligned_cols=383 Identities=27% Similarity=0.409 Sum_probs=347.2
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCC------CCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf 21562004897312788899999883588666033323------569998899998976518998886551069999982
Q 004502 182 LCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVD------SCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIAN 255 (748)
Q Consensus 182 ~s~f~d~Q~I~iQE~~e~~~~g~~Prsi~v~l~~dLv~------~~~pGd~V~v~Gi~~~~~~~~~~~~~~~~~~~i~a~ 255 (748)
.+.|.|||.|+|||.|+++|.|++||+++|+|++|||| +|+|||+|.|+|||+.. |++||
T Consensus 110 k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~--------------~l~a~ 175 (506)
T 3f8t_A 110 RIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA--------------TLDAL 175 (506)
T ss_dssp CCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT--------------EEEEE
T ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE--------------EEEEE
T ss_conf 5554564799985174547898988159999465344751345412687789999999973--------------99999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 13333235789999989999999993272099999870058565729999999999947920014898433576118998
Q 004502 256 NVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMV 335 (748)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~i~~~l~~si~p~i~G~e~~K~aill~l~gg~~~~~~~g~~~rg~i~iLlv 335 (748)
+|+. ++......+++++.+.|++++++ ++|+.+.+|++| |+|++.+|+|++++|+||..| .||++|+||+
T Consensus 176 ~i~~-~~~~~~~~~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~ 245 (506)
T 3f8t_A 176 EVHK-KDPIPEVHPDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLA 245 (506)
T ss_dssp EEEE-ECSSCCCCCCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEE
T ss_pred EEEE-CCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCCC-------CCCCEEEEEE
T ss_conf 9997-67555577999999999999878-899999997515-079799999999997089154-------6885049997
Q ss_pred CCCCCCHHHHHHHH-HHHCCCCEEECCCCCCCCCCCEEEEECCCCCCEEECCCEEEECCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 79973178999999-98699808960578877664100353043464130046176216861562487869956678999
Q 004502 336 GDPSVAKSQLLRAI-MNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIH 414 (748)
Q Consensus 336 G~pGtGKS~llk~i-~~~~~~~~~~~g~~~s~~glt~~~~~~~~~g~~~~e~g~l~la~~Gi~~IDEidk~~~~~~~~L~ 414 (748)
|+||+ ||++++++ ++++|+.+|++|.+++..|++++ .++. +| |.+++|++++|++|+||+|||++|+++++.+|+
T Consensus 246 G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLl 321 (506)
T 3f8t_A 246 GYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALM 321 (506)
T ss_dssp SCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE-EECC-CC-CCCCCCEEEECCCCEEEHHHHHHCCHHHHHHHH
T ss_conf 79976-99999999987389817826988886674389-9868-87-656788068757983236855009999999999
Q ss_pred HHHHHCEEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99760538860156468723640386101788875578789644689995555013489993489996676899999998
Q 004502 415 EVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLR 494 (748)
Q Consensus 415 e~me~~~isi~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFDlif~l~d~~~~~~d~~ia~~il~ 494 (748)
++||+|++++. |. +++++|+++||+||.+ +|++++++ +|+.|+++++|||||+|++.|.|+.+.|..
T Consensus 322 EaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e------- 388 (506)
T 3f8t_A 322 EAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEE------- 388 (506)
T ss_dssp HHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCSEEEETTC----------------
T ss_pred HHHHCCCEEEC--CE--ECCCCEEEEEEECCCC-CCCCCCCC-CCCCCCHHHHHHEEEEEEECCCCCHHHHHC-------
T ss_conf 99867927877--88--8378729999857533-46877881-101798688502336877548999567200-------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCHHH
Q ss_conf 42114567999987788888888875565203677653101243333687677779999999999987-12998789999
Q 004502 495 MHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAK-HRIQPELTDEA 573 (748)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~kyi~~ar-~~~~P~l~~ea 573 (748)
. ..+.++.+.|++|+.||| .+++|.+++++
T Consensus 389 ------~-------------------------------------------~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea 419 (506)
T 3f8t_A 389 ------Q-------------------------------------------DTEVPSYTLLRRYLLYAIREHPAPELTEEA 419 (506)
T ss_dssp ------------------------------------------------------CCHHHHHHHHHHHHHHCSCCEECHHH
T ss_pred ------C-------------------------------------------CCCCCCHHHHHHHHHHHHHCCCCCEECHHH
T ss_conf ------2-------------------------------------------477789999999999997607875029999
Q ss_pred HHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999998305688--7889986567034646999999999711999756988999999988862110012356899
Q 004502 574 SEQIATTYAELRNSSSN--AKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEERE 651 (748)
Q Consensus 574 ~~~i~~~y~~lR~~~~~--~~~~~~~~~t~R~LesliRls~A~Akl~l~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~~~ 651 (748)
.++|.++|..+|+.... ......+++|+|++++|+|+|+|+|+|++|+.|+++||.+|++|++.|+.+.
T Consensus 420 ~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~--------- 490 (506)
T 3f8t_A 420 RKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETA--------- 490 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_conf 99999999997327443544433202426899999999999999973969779999999999999999983---------
Q ss_pred HHHHHHHHCCCCCCCCCCC
Q ss_conf 9886642039899999999
Q 004502 652 QERQREQEKNPRAEHPGGN 670 (748)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~ 670 (748)
..+|++|..|+.
T Consensus 491 -------a~dp~tg~id~~ 502 (506)
T 3f8t_A 491 -------MQIPGGDEIRIS 502 (506)
T ss_dssp -------TC----------
T ss_pred -------CCCCCCCEEEEE
T ss_conf -------578899868687
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=1.00 E-value=1 Score=410.05 Aligned_cols=271 Identities=26% Similarity=0.388 Sum_probs=237.5
Q ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHH--HCCCCEEEEECHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 74889999999998826622699999999--8599499995313731088757899669899999999999999995094
Q 004502 4 SQQEFQERKREFYDFLELSIYQDEIKAMI--NHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDP 81 (748)
Q Consensus 4 ~~~~~~~~~~~f~~Fl~~~~Y~~~i~~~~--~~~~~~l~Id~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~~~ 81 (748)
..+..++++++|.+||++++|+++|++|+ ..+..+|.||++||..|+++||+.|+++|.+++++|+.|+.++. |
T Consensus 7 ~~~~~~~~~~~f~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~----~ 82 (279)
T 1ltl_A 7 KTVDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNID----R 82 (279)
T ss_dssp --CCHHHHHHHHHHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTC----T
T ss_pred HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHC----C
T ss_conf 107869999999998640468999999986278974999996998646899999999898999999999999856----1
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCC
Q ss_conf 33257862899864787663136556774578858999789999436521587788862599961110121356787778
Q 004502 82 KYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVP 161 (748)
Q Consensus 82 ~~~~~~~~i~v~i~~~~~~~~~~~r~L~s~~igkLV~v~GiV~r~S~V~p~l~~a~f~C~~Cg~~~~~~~~~~~~~~~~p 161 (748)
+.... .++++|.|+| ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.|..||+....++. .+.+..|
T Consensus 83 -~~~~~-~~~vr~~~~~--~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~--~~~~~~P 156 (279)
T 1ltl_A 83 -LRKNV-DLNIRFSGIS--NVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQS--TNMITEP 156 (279)
T ss_dssp -TCCCC-CCEEEEECCS--CBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECS--SSSCCCC
T ss_pred -CCCCE-EEEEEEECCC--CCCCCCCCCHHHCCCEEEEEEEEEEECCEEEEEEEEEEECCCCCCEEEEEEC--CCCCCCC
T ss_conf -14770-4999997897--7777566881548987999999998056278999999990799989999836--8842499
Q ss_pred CCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 88778898999980687528215620048973127888999998835886660333235699988999989765189988
Q 004502 162 TGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSK 241 (748)
Q Consensus 162 ~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~I~iQE~~e~~~~g~~Prsi~v~l~~dLv~~~~pGd~V~v~Gi~~~~~~~~~ 241 (748)
. .||.|...| |.++++.|.|+|||+|+|||+|+.+|.|++||+++|+|++||||.|+|||+|.|||||+..+.
T Consensus 157 ~--~Cp~C~~~~--f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~~--- 229 (279)
T 1ltl_A 157 S--LCSECGGRS--FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRD--- 229 (279)
T ss_dssp S--CCTTTCCCC--EEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEE---
T ss_pred C--CCCCCCCCC--CEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEC---
T ss_conf 7--598999987--488336257883079999648555899999808999991540175479999999999998667---
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 865510699999821333323578999998999999999327209999987
Q 004502 242 GSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGN 292 (748)
Q Consensus 242 ~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~i~~~l~~ 292 (748)
...++|++|++|++|+..++......+|+++.+.|+++++++++|+.|++
T Consensus 230 -~~~~~~~~~l~a~~I~~~~~~~~~~~~t~ed~~~i~~ls~~~~iy~~L~~ 279 (279)
T 1ltl_A 230 -ERTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELAGDPNIYEKIIR 279 (279)
T ss_dssp -TTTTEEEEEEEEEECCBC--------------------------------
T ss_pred -CCCCEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHC
T ss_conf -99725899999999998067444577999999999998519989999519
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=385.80 Aligned_cols=255 Identities=27% Similarity=0.426 Sum_probs=221.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHCCCCEEEEECHHHHHHCCCHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 9847488999999999882662-------269999999985994999953137310887578996698999999999999
Q 004502 1 MDISQQEFQERKREFYDFLELS-------IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAAT 73 (748)
Q Consensus 1 ~~~~~~~~~~~~~~f~~Fl~~~-------~Y~~~i~~~~~~~~~~l~Id~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~ 73 (748)
|-++.+.. ++.+.|++||+++ +|+++|++++..+..+|.||++||..|+++||+.|+++|.+++++|++|+.
T Consensus 1 ~~~~~~~~-~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~ 79 (268)
T 2vl6_A 1 MEIPSKQI-DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALY 79 (268)
T ss_dssp ------CC-CHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred CCCCCCHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 98863169-99999999998622146855799999999974994799997998745699999999898999999999999
Q ss_pred HHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE--CCCCCEEEEEE
Q ss_conf 9999509433257862899864787663136556774578858999789999436521587788862--59996111012
Q 004502 74 DWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYC--PTTGSFLTREY 151 (748)
Q Consensus 74 e~~~~~~~~~~~~~~~i~v~i~~~~~~~~~~~r~L~s~~igkLV~v~GiV~r~S~V~p~l~~a~f~C--~~Cg~~~~~~~ 151 (748)
+++....+++......++++|.|+| ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.| ..||+....++
T Consensus 80 ~~~~~~~~~~~~~~~~~~vr~~~~~--~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~ 157 (268)
T 2vl6_A 80 DHILQLDPTYQRDIEKVHVRIVGIP--RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPE 157 (268)
T ss_dssp HHHHTTCGGGTTTCSCCCEEEECCS--CEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESST
T ss_pred HHHHHHCCHHHCCCCCEEEEEECCC--CCCCCCCCCHHHCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEE
T ss_conf 9998748065524761899998887--77763548966789869997899982785417689999978888998886563
Q ss_pred --ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
Q ss_conf --135678777888778898999980687528215620048973127888999998835886660333235699988999
Q 004502 152 --RDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAI 229 (748)
Q Consensus 152 --~~~~~~~~~p~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~I~iQE~~e~~~~g~~Prsi~v~l~~dLv~~~~pGd~V~v 229 (748)
+. .+.+..|. .||.|.. +++|.++++.|.|+|||+|+|||+|+.+|.|++||+++|+|++||||.|+|||+|.|
T Consensus 158 ~~~~-~~~~~~P~--~Cp~C~~-~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~v 233 (268)
T 2vl6_A 158 DEEM-PEVLEMPT--ICPKCGK-PGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKV 233 (268)
T ss_dssp TSCC-CTTCCCCS--BCTTTCC-BCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEE
T ss_pred CCCC-CCCCCCCC--CCCCCCC-CCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEE
T ss_conf 2457-88666975--3889989-998798257557871179999838777899999828999991471475569999999
Q ss_pred EEEEEECCCCC-CCCCCCEEEEEEEEECCCCCCC
Q ss_conf 98976518998-8865510699999821333323
Q 004502 230 VGTYKALPGKS-KGSVNGVFRTVLIANNVSLLNK 262 (748)
Q Consensus 230 ~Gi~~~~~~~~-~~~~~~~~~~~i~a~~i~~~~~ 262 (748)
||||+..+... .....++|++|++||||+..++
T Consensus 234 tGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 234 TGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp EEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred EEEEEEEECCCCCCCCCEEEEEEEEEEEEEEECC
T ss_conf 9999971244555787317999999999999325
No 5
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=1.00 E-value=1 Score=205.96 Aligned_cols=267 Identities=18% Similarity=0.194 Sum_probs=187.2
Q ss_pred CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---EEECC
Q ss_conf 099999870058565729999999999947920014898433576118998799731789999999869980---89605
Q 004502 285 DTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA---ISTTG 361 (748)
Q Consensus 285 ~i~~~l~~si~p~i~G~e~~K~aill~l~gg~~~~~~~g~~~rg~i~iLlvG~pGtGKS~llk~i~~~~~~~---~~~~g 361 (748)
+.+..+..++++.|+|++.+++.+++++.++ . |+||+|+||||||++++++++.++.+ .+...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~---------~-----~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSG---------E-----SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT---------C-----EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------C-----EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988722578889999999998507---------8-----3686468348799999999998864268999998
Q ss_pred CCCCCCCCCEEEEECC--CCCCEE-ECCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCEEEEECCCEEEEECCCEE
Q ss_conf 7887766410035304--346413-0046176216861562487869956678999997605388601564687236403
Q 004502 362 RGSSGVGLTAAVTSDQ--ETGERR-LEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCS 438 (748)
Q Consensus 362 ~~~s~~glt~~~~~~~--~~g~~~-~e~g~l~la~~Gi~~IDEidk~~~~~~~~L~e~me~~~isi~k~g~~~~l~~~~~ 438 (748)
..++...+++...... ..|.+. ...|. ++..+|+||||++++++..++.|+++|+++.+++ .|....++.++
T Consensus 77 ~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~- 151 (500)
T 3nbx_X 77 RFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL- 151 (500)
T ss_dssp TTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-
T ss_pred HCCCHHHHCCCCCHHHHHHCHHHHHHHCCC--CCCCEEEEHHHHHHHCHHHHHHHHHHHHHHHCCC--CCCCCCCCHHH-
T ss_conf 159888834730088775210587653257--8752233078676435799999999987876138--88767764102-
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86101788875578789644689995555013489993489996676-89999999842114567999987788888888
Q 004502 439 VVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDID-RRISDHVLRMHRYRSVMDGGEGGLDGSSRYGR 517 (748)
Q Consensus 439 iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFDlif~l~d~~~~~~d-~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~ 517 (748)
+++|+|+... ...+.+++++||++.+.+ +.|+...+ ..+ +..+..... .
T Consensus 152 iI~ATN~lpe----------~~~~~~aLldRF~~~i~v-~~p~~~ee~~~I----L~~~~~~~~---------------~ 201 (500)
T 3nbx_X 152 LVAASNELPE----------ADSSLEALYDRMLIRLWL-DKVQDKANFRSM----LTSQQDEND---------------N 201 (500)
T ss_dssp EEEEESSCCC----------TTCTTHHHHTTCCEEEEC-CSCCCHHHHHHH----HTCCCCTTS---------------C
T ss_pred HHHCCCCCCC----------CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHCCCCCCC---------------C
T ss_conf 1111566887----------655389999999999999-876544308998----743666678---------------9
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 87556520367765310124333368767777999999999998712998789999999999999983056887889986
Q 004502 518 EDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTL 597 (748)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~kyi~~ar~~~~P~l~~ea~~~i~~~y~~lR~~~~~~~~~~~~ 597 (748)
.....+.++.+.+.++..+++. ..+++++.+++...+..+|.... ..
T Consensus 202 ------------------------~~~~~~~~~~e~l~~~~~~~~~---v~v~d~v~e~i~~l~~~lr~~r~------~~ 248 (500)
T 3nbx_X 202 ------------------------PVPDALQVTDEEYERWQKEIGE---ITLPDHVFELIFMLRQQLDKLPD------AP 248 (500)
T ss_dssp ------------------------CSCTTTSBCHHHHHHHHHHHTT---CBCCHHHHHHHHHHHHHHHHCSS------SC
T ss_pred ------------------------CCCCCCEECHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHHCCCC------CC
T ss_conf ------------------------8973344268999998852784---22752899999999998624889------98
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 567034646999999999711999756988999999
Q 004502 598 PITARTLETIIRLSTAHAKMKLNRKISKSDVEAALK 633 (748)
Q Consensus 598 ~~t~R~LesliRls~A~Akl~l~~~V~~~Dv~~Ai~ 633 (748)
.+|+|.+++++|+|+|+|.+++|+.|+++|+..|..
T Consensus 249 ~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a~~ 284 (500)
T 3nbx_X 249 YVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKD 284 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 543157999999999877651776444057888776
No 6
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=1.00 E-value=1 Score=203.68 Aligned_cols=276 Identities=15% Similarity=0.210 Sum_probs=203.9
Q ss_pred CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEE-CC-
Q ss_conf 2099999870058565729999999999947920014898433576118998799731789999999869980896-05-
Q 004502 284 DDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIST-TG- 361 (748)
Q Consensus 284 ~~i~~~l~~si~p~i~G~e~~K~aill~l~gg~~~~~~~g~~~rg~i~iLlvG~pGtGKS~llk~i~~~~~~~~~~-~g- 361 (748)
.+.+..+..++.+.++|++.++++++.++.++ . |+||+|+||||||++++++++.++..++. ..
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~---------~-----~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG---------G-----HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT---------C-----CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHCCCEECCHHHHHHHHHHHHCC---------C-----EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999986141018599999999999769---------8-----599988998859999999999819982799658
Q ss_pred CCCCCCCCCEEEEECCCCCCEEECCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCEEEEECCCEEEEECCCEEEEE
Q ss_conf 78877664100353043464130046176216861562487869956678999997605388601564687236403861
Q 004502 362 RGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVA 441 (748)
Q Consensus 362 ~~~s~~glt~~~~~~~~~g~~~~e~g~l~la~~Gi~~IDEidk~~~~~~~~L~e~me~~~isi~k~g~~~~l~~~~~iia 441 (748)
.......+++....+...|.+...+|.+ .++++||||++.+++..++.|+++|+++.+++ .|.....+.++.+++
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~via 155 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLA 155 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEE
T ss_pred CCCCHHHCCCCEEECCCCCCEEECCCCC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCEEEECCCCEEEEE
T ss_conf 8788554078534307887168435850---13679997504299999999999996293635--997897799879998
Q ss_pred ECCCCC--CCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 017888--755787896446899955550134899934899966768999999984211456799998778888888887
Q 004502 442 AANPIY--GTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGRED 519 (748)
Q Consensus 442 a~Np~~--g~~~~~~~~~~ni~l~~~LlsRFDlif~l~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (748)
++||.. |.+ .++++|++||++.+.+ +.|+.+....+..+.+.....
T Consensus 156 t~np~~~~~~~----------~l~~~l~~Rf~~~i~i-~~p~~~~~~~il~~~~~~~~~--------------------- 203 (331)
T 2r44_A 156 TQNPVEQEGTY----------PLPEAQVDRFMMKIHL-TYLDKESELEVMRRVSNMNFN--------------------- 203 (331)
T ss_dssp EECTTCCSCCC----------CCCHHHHTTSSEEEEC-CCCCHHHHHHHHHHHHCTTCC---------------------
T ss_pred ECCCCCCCCCC----------CCCHHHHHHEEEEEEC-CCCCHHHHHHHHHHCCCCCCC---------------------
T ss_conf 06987656764----------6898998154389981-799999999999842144860---------------------
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----CCC
Q ss_conf 5565203677653101243333687677779999999999987129987899999999999999830568878----899
Q 004502 520 EVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAK----TGG 595 (748)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~kyi~~ar~~~~P~l~~ea~~~i~~~y~~lR~~~~~~~----~~~ 595 (748)
......++.+.+......++ ...+++++.+.+.+.+..+|..+.... ...
T Consensus 204 -----------------------~~~~~~~~~~~i~~~~~~~~---~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~ 257 (331)
T 2r44_A 204 -----------------------YQVQKIVSKNDVLEIRNEIN---KVTISESLEKYIIELVFATRFPAEYGLEAEASYI 257 (331)
T ss_dssp -----------------------CCCCCCSCHHHHHHHHHHHH---TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHE
T ss_pred -----------------------HHCCCCCCHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf -----------------------11033489999999999854---6778999999999999997425001442100120
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 86567034646999999999711999756988999999988
Q 004502 596 TLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALN 636 (748)
Q Consensus 596 ~~~~t~R~LesliRls~A~Akl~l~~~V~~~Dv~~Ai~l~~ 636 (748)
..++++|.+.+++|++.|+|.+++++.|+++|+.+|+..+-
T Consensus 258 ~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 258 LYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 14757369999999999999976999779999999999996
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=1.00 E-value=1 Score=194.26 Aligned_cols=264 Identities=21% Similarity=0.240 Sum_probs=193.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----------
Q ss_conf 8565729999999999947920014898433576118998799731789999999869980896057887----------
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSS---------- 365 (748)
Q Consensus 296 p~i~G~e~~K~aill~l~gg~~~~~~~g~~~rg~i~iLlvG~pGtGKS~llk~i~~~~~~~~~~~g~~~s---------- 365 (748)
.+++|++.+++++..+++.+. .-|+||+|+||||||++++++++.+++..+..+....
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTT
T ss_pred HHCCCHHHHHHHHHHHHHCCC------------CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 100380999999999862888------------86499989998639999999998675211234454445544432110
Q ss_pred -----------------------CCCCCEEEEEC--CCCCCEEECCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf -----------------------76641003530--43464130046176216861562487869956678999997605
Q 004502 366 -----------------------GVGLTAAVTSD--QETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQ 420 (748)
Q Consensus 366 -----------------------~~glt~~~~~~--~~~g~~~~e~g~l~la~~Gi~~IDEidk~~~~~~~~L~e~me~~ 420 (748)
...+.+..... ...+.+...+|.+..+++|++||||++.++.+.+..|+++|+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHEEECHHHHHHCCCCEEECCCEEEECCCCEEEEECHHHCCHHHHHHHHHHHHCC
T ss_conf 23320244557786100678766456121100444422785311475213068988999572318999999999999629
Q ss_pred EEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 38860156468723640386101788875578789644689995555013489993489996676899999998421145
Q 004502 421 TVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRS 500 (748)
Q Consensus 421 ~isi~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFDlif~l~d~~~~~~d~~ia~~il~~~~~~~ 500 (748)
...+...|.....+.++.+++++||..+ .++++|++||++.+.+...++.+.+..+..+.+......
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~------------~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~- 238 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADP- 238 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCH-
T ss_pred CEEEEECCEEEEECCCEEEEEEECCCCC------------CCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-
T ss_conf 5489745457761786289997488878------------889889945546897479776789999999987314580-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCHHHHHHHHH
Q ss_conf 67999987788888888875565203677653101243333687677779999999999987129-98789999999999
Q 004502 501 VMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRI-QPELTDEASEQIAT 579 (748)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~kyi~~ar~~~-~P~l~~ea~~~i~~ 579 (748)
..|.. ........+++++.+++... ...+++++.+.|..
T Consensus 239 -------------------------~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~ 278 (350)
T 1g8p_A 239 -------------------------KAFLE---------------EWRPKDMDIRNQILEARERLPKVEAPNTALYDCAA 278 (350)
T ss_dssp -------------------------HHHHH---------------HHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHH
T ss_pred -------------------------HHHCC---------------CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf -------------------------33202---------------34424699999999999867789989999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99998305688788998656-70346469999999997119997569889999999888
Q 004502 580 TYAELRNSSSNAKTGGTLPI-TARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNF 637 (748)
Q Consensus 580 ~y~~lR~~~~~~~~~~~~~~-t~R~LesliRls~A~Akl~l~~~V~~~Dv~~Ai~l~~~ 637 (748)
++... .. ++|.+..+++.+.++|.+++++.|+.+|+.+|+.++..
T Consensus 279 ~~~~~-------------~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 279 LCIAL-------------GSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALS 324 (350)
T ss_dssp HHHHS-------------SSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHG
T ss_pred HHHHH-------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99985-------------79985178999999999998709986789999999999875
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=1.00 E-value=1 Score=178.53 Aligned_cols=241 Identities=22% Similarity=0.289 Sum_probs=168.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCE----EECCCCCC------
Q ss_conf 85657299999999999479200148984335761189987997317899999998699808----96057887------
Q 004502 296 PSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAI----STTGRGSS------ 365 (748)
Q Consensus 296 p~i~G~e~~K~aill~l~gg~~~~~~~g~~~rg~i~iLlvG~pGtGKS~llk~i~~~~~~~~----~~~g~~~s------ 365 (748)
..++|++.++..+.+++..| + +++|+|+||+|||.+++.++..+++.. ...+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---------~-----~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---------R-----HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---------C-----CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEE
T ss_pred CEEECCHHHHHHCCCCCCCC---------C-----EEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCE
T ss_conf 25788224676513006699---------8-----899994898789999999962488665876999578664558747
Q ss_pred ------------------------------------------------------------CCCCCEEEEECC------CC
Q ss_conf ------------------------------------------------------------766410035304------34
Q 004502 366 ------------------------------------------------------------GVGLTAAVTSDQ------ET 379 (748)
Q Consensus 366 ------------------------------------------------------------~~glt~~~~~~~------~~ 379 (748)
...+++.+..+. .+
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEECCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEECCCCCHHHCCCEEEECHHHCCCCCC
T ss_conf 99746547899999987512331232210223243223224642666789998974899877667128842323377444
Q ss_pred C-CEEECCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCEEEEECCC-----E---EEEECCCEEEEEECCCCCCCC
Q ss_conf 6-413004617621686156248786995667899999760538860156-----4---687236403861017888755
Q 004502 380 G-ERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAG-----I---HASLNARCSVVAAANPIYGTY 450 (748)
Q Consensus 380 g-~~~~e~g~l~la~~Gi~~IDEidk~~~~~~~~L~e~me~~~isi~k~g-----~---~~~l~~~~~iiaa~Np~~g~~ 450 (748)
+ ...+.+|.+..|++|++||||++.+++..+..|+++|+++.+.+...+ . ....+.++.+++++|+....
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~- 265 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD- 265 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH-
T ss_pred CCCCCCCCCEEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHH-
T ss_conf 6333546741652579889980116399999999999997393774165333565667777601258999825887876-
Q ss_pred CCCCCCCCCCCCCHHHHCCCC---EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 787896446899955550134---89993489996676899999998421145679999877888888888755652036
Q 004502 451 DRSLTPTKNIGLPDSLLSRFD---LLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASV 527 (748)
Q Consensus 451 ~~~~~~~~ni~l~~~LlsRFD---lif~l~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (748)
.++++|++||+ +.+.+ +...++
T Consensus 266 ----------~l~~~l~~R~~v~~i~i~l-~~~~~~-------------------------------------------- 290 (604)
T 3k1j_A 266 ----------KMHPALRSRIRGYGYEVYM-RTTMPD-------------------------------------------- 290 (604)
T ss_dssp ----------HSCHHHHHHHHHHSEEEEC-CSEEEC--------------------------------------------
T ss_pred ----------HCCHHHHHHHHCCCEEEEC-CCCCCC--------------------------------------------
T ss_conf ----------4698899875146158635-434458--------------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 776531012433336876777799999999999871-----299878999999999999998305688788998656703
Q 004502 528 FVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKH-----RIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITAR 602 (748)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~kyi~~ar~-----~~~P~l~~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R 602 (748)
..+.++.|+.++.+ ...|.++++|...|..+|..+... ....+.++|
T Consensus 291 ----------------------~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~------r~~l~~~~R 342 (604)
T 3k1j_A 291 ----------------------TIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGR------KGHLTLRLR 342 (604)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCS------TTEEECCHH
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC------CCCCCCCHH
T ss_conf ----------------------8999999999999997653676667999999999997653244------112565899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 46469999999997119997569889999999
Q 004502 603 TLETIIRLSTAHAKMKLNRKISKSDVEAALKA 634 (748)
Q Consensus 603 ~LesliRls~A~Akl~l~~~V~~~Dv~~Ai~l 634 (748)
++++++|.|.+.|+.+.++.|+.+|+.+|+..
T Consensus 343 ~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 343 DLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999999999987637653248999999986
No 9
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=1.00 E-value=1 Score=143.89 Aligned_cols=260 Identities=16% Similarity=0.244 Sum_probs=145.9
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCC-CC
Q ss_conf 987005856572999999999994792001489---84335761189987997317899999998699808960578-87
Q 004502 290 LGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKN---GTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRG-SS 365 (748)
Q Consensus 290 l~~si~p~i~G~e~~K~aill~l~gg~~~~~~~---g~~~rg~i~iLlvG~pGtGKS~llk~i~~~~~~~~~~~g~~-~s 365 (748)
+...+...|+|++.+++.+..++.......... ........|+||+|+||||||.+++++++.+...++..... ..
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHC
T ss_conf 99998746038899999999999999865200111234567998189989999889999999999829988981467731
Q ss_pred CCCCCEEEEECCCCCCEEECCCEEEECCCCEEEECCCCCCCHH--------------HHHHHHHHHHHCEEEEECCCEEE
Q ss_conf 7664100353043464130046176216861562487869956--------------67899999760538860156468
Q 004502 366 GVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQ--------------DRVAIHEVMEQQTVTIAKAGIHA 431 (748)
Q Consensus 366 ~~glt~~~~~~~~~g~~~~e~g~l~la~~Gi~~IDEidk~~~~--------------~~~~L~e~me~~~isi~k~g~~~ 431 (748)
..++.+........+-+....+.+..+.+||+||||++++... .++.|+++|+...+.+...+...
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 89 EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 33224642778999999974356873699689996866635033565334321328999999998537625226766654
Q ss_pred EECCCEEEEEECCCCC---CCC-------------------CCCC----------CCCCCC--------CCCHHHHCCCC
Q ss_conf 7236403861017888---755-------------------7878----------964468--------99955550134
Q 004502 432 SLNARCSVVAAANPIY---GTY-------------------DRSL----------TPTKNI--------GLPDSLLSRFD 471 (748)
Q Consensus 432 ~l~~~~~iiaa~Np~~---g~~-------------------~~~~----------~~~~ni--------~l~~~LlsRFD 471 (748)
.-..++.+++++|..+ |.+ .... .+.+.+ .+.++|++|||
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~ 248 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCC
T ss_pred CCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHHCCCC
T ss_conf 67776499987870078437707799999986312456786655454432010688988579999987198878865667
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 89993489996676899999998421145679999877888888888755652036776531012433336876777799
Q 004502 472 LLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTI 551 (748)
Q Consensus 472 lif~l~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (748)
.++.+ .+++.+.-..+... ...
T Consensus 249 ~~~~~-~pl~~~~~~~I~~~----~~~----------------------------------------------------- 270 (363)
T 3hws_A 249 VVATL-NELSEEALIQILKE----PKN----------------------------------------------------- 270 (363)
T ss_dssp EEEEC-CCCCHHHHHHHHHS----STT-----------------------------------------------------
T ss_pred EEEEC-CCCCHHHHHHHHHH----HHH-----------------------------------------------------
T ss_conf 15404-89999999999998----998-----------------------------------------------------
Q ss_pred HHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999987-1299878999999999999998305688788998656703464699999999971199
Q 004502 552 QFLKKYIHYAK-HRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLN 620 (748)
Q Consensus 552 ~~L~kyi~~ar-~~~~P~l~~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRls~A~Akl~l~ 620 (748)
.++++|....+ ......+++++.+.|..+... ++..+|.|+++|.-+-..+-.++.
T Consensus 271 ~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~-------------~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 271 ALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA-------------RKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH-------------TTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999984696488789999999996168-------------766824799999999899997452
No 10
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=1.00 E-value=1 Score=142.87 Aligned_cols=272 Identities=18% Similarity=0.187 Sum_probs=154.3
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC---------------C---CCCCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 999870058565729999999999947920014---------------8---9843357611899879973178999999
Q 004502 288 DLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNL---------------K---NGTHLRGDINMMMVGDPSVAKSQLLRAI 349 (748)
Q Consensus 288 ~~l~~si~p~i~G~e~~K~aill~l~gg~~~~~---------------~---~g~~~rg~i~iLlvG~pGtGKS~llk~i 349 (748)
..+...+...|+|++.+|+++..++.....+.. + .+...++..|+||+|+||||||.+++.+
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 99999986581590999999999999999988754322100112334455655545568998899898998889999999
Q ss_pred HHHCCCCEEECC-CCCCCCCCCEEEEECCCCCCEEECCCEEEECCCCEEEECCCCCCCHH--------------HHHHHH
Q ss_conf 986998089605-78877664100353043464130046176216861562487869956--------------678999
Q 004502 350 MNIAPLAISTTG-RGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQ--------------DRVAIH 414 (748)
Q Consensus 350 ~~~~~~~~~~~g-~~~s~~glt~~~~~~~~~g~~~~e~g~l~la~~Gi~~IDEidk~~~~--------------~~~~L~ 414 (748)
++.+...+.... ...+..++.+...............|.+..+.+|++||||++++... .++.|+
T Consensus 93 a~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll 172 (376)
T 1um8_A 93 AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALL 172 (376)
T ss_dssp HHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHH
T ss_pred HHHHCCCEEEECCHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEECCHHHHHHHCCCCCEECCCCHHHHHHHHH
T ss_conf 99819988995313543147678569999999876401116645980999857777743047872001454378999999
Q ss_pred HHHHHCEEEEECCCEEEEECCC--------EEEEEECCCC------CCCCCC----C-CCCC-----------------C
Q ss_conf 9976053886015646872364--------0386101788------875578----7-8964-----------------4
Q 004502 415 EVMEQQTVTIAKAGIHASLNAR--------CSVVAAANPI------YGTYDR----S-LTPT-----------------K 458 (748)
Q Consensus 415 e~me~~~isi~k~g~~~~l~~~--------~~iiaa~Np~------~g~~~~----~-~~~~-----------------~ 458 (748)
.+||.+.+.+...|.....+.+ ..+++++|.. ..++.. + .... .
T Consensus 173 ~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 252 (376)
T 1um8_A 173 KIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLV 252 (376)
T ss_dssp HHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHH
T ss_pred HHHHCCCEECCCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHCCHHHHH
T ss_conf 98615502015655544577641799558757994698777789999884235557784443200066888641888885
Q ss_pred CCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 68999555501348999348999667689999999842114567999987788888888875565203677653101243
Q 004502 459 NIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGK 538 (748)
Q Consensus 459 ni~l~~~LlsRFDlif~l~d~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (748)
...+.++|++||+.++.+ ...+.+.-..++.+.+.
T Consensus 253 ~~~~~p~l~~R~~~~i~~-~~l~~~~l~~i~~~~~~-------------------------------------------- 287 (376)
T 1um8_A 253 TYGLIPELIGRLPVLSTL-DSISLEAMVDILQKPKN-------------------------------------------- 287 (376)
T ss_dssp HTTCCHHHHTTCCEEEEC-CCCCHHHHHHHHHSSTT--------------------------------------------
T ss_pred HCCCCHHHHCCCCCEEEC-CCCCHHHHHHHHHHHHH--------------------------------------------
T ss_conf 558976875478714444-67999999999852577--------------------------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 333687677779999999999987-1299878999999999999998305688788998656703464699999999971
Q 004502 539 RTQRGQKRDTLTIQFLKKYIHYAK-HRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKM 617 (748)
Q Consensus 539 ~~~~~~~~~~~~~~~L~kyi~~ar-~~~~P~l~~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRls~A~Akl 617 (748)
.++++|....+ ......+++++...|..+... .+..+|.|.+++..+...+-.
T Consensus 288 -------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~-------------~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 288 -------------ALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE-------------RKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp -------------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH-------------TTCTGGGHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHHHHH
T ss_conf -------------799999999866596699889999999997435-------------666827799999999999986
Q ss_pred CCCC------CCCHHHHHH
Q ss_conf 1999------756988999
Q 004502 618 KLNR------KISKSDVEA 630 (748)
Q Consensus 618 ~l~~------~V~~~Dv~~ 630 (748)
+... .|+.+|+..
T Consensus 342 ~~~~~~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 342 DLPKLKGSEVRITKDCVLK 360 (376)
T ss_dssp TGGGGTTSEEEECHHHHTT
T ss_pred HCCCCCCCEEEEEHHHHCC
T ss_conf 2557888789984889567
Done!