BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004503
(748 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust.
Identities = 293/630 (46%), Positives = 407/630 (64%), Gaps = 15/630 (2%)
Query: 116 TTRSWDFIGLPQTARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFA 175
TTRSWDF+G P T R ++ES+IVVG++DTGI PES SF D GF PPP KWKG C+
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 176 NFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGA 235
NF CN K+IGAR + + P D+ P D +GHGTHT+ST AG +V+ A+LYGL G
Sbjct: 61 NFR-CNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGT 119
Query: 236 ARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGAT-EDYASDTIS 294
ARG VP AR+AAYKVCW + GCSD DILAA+D AI DGV++IS+S+GGA Y D I+
Sbjct: 120 ARGGVPLARIAAYKVCW-NDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIA 178
Query: 295 VGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTXXXXXXXX 354
+G+FHA+++GI+T SAGN GP + T ++ +PWL++VAAS +DR+F ++V+
Sbjct: 179 IGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG 238
Query: 355 XXXXTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADS 414
TFD ++YPLVSG D+ + ++RFC D S++P +KGK+V C+ ++G
Sbjct: 239 VSINTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCE-ASFGPHE 295
Query: 415 XXXXXXXXXXXXXSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEV- 473
+ D A Y P ++++ D YI+S RSP A I+KS +
Sbjct: 296 FFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL 355
Query: 474 KVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMS 533
AP + SFSSRGPN +K ++KPDI+ PG++ILA++ + + G++ +T F ++S
Sbjct: 356 NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL---FNIIS 412
Query: 534 GTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQK 593
GTSM+CPHI G+ YVK+++P+WSPAAIKSA+MTTA PM+ R N +AEFAYG+G VNP K
Sbjct: 413 GTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLK 472
Query: 594 AVSPGLVYDMDDMSYIQFLCHEGYNGSSLAVLVGSKSINCTSLIPGVGYDALNYPTMQVS 653
AV PGLVYD ++ Y++FLC +GYN ++ + G S CTS G +D LNYP+ +S
Sbjct: 473 AVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA-CTSGNTGRVWD-LNYPSFGLS 530
Query: 654 LKSNGELTTAIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVV 713
+ S + F R +T+V P+ S Y A I AP+G+ I+V P LSF+ ++SF++ V
Sbjct: 531 V-SPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589
Query: 714 KAKPMSSTQVLSGSLEWKSPRHVVRSPIVI 743
+ V+S SL W H VRSPI I
Sbjct: 590 RGSIKGF--VVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 173/319 (54%), Gaps = 22/319 (6%)
Query: 441 PGTMVNVTDGDNITDYIHSTRSPSAVI-YKSQEVKVR-APFIASFSSRGPNPGSKHLLKP 498
PG +VN +G + +Y+ ++ +P+A I ++ + + AP +A+ S+RGP+ + KP
Sbjct: 328 PGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKP 387
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSK-FTLMSGTSMACPHIAGVVAYVKSFHPSWS 557
DI APG+ ILA+Y T + + S + L SGTSMA PH AG+ A +K+ HP WS
Sbjct: 388 DILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWS 447
Query: 558 PAAIKSAIMTTA-------KPMSQRVNNEAE--FAYGAGQVNPQKAVSPGLVYDMDDMSY 608
P+AI+SA+MTTA KP+ NN+A GAG V+P +A+ PGLVYD Y
Sbjct: 448 PSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDY 507
Query: 609 IQFLCHEGYNGSSLAVLV-GSKSINCTSLIPGVGYDALNYPTMQV--SLKSNGELTTAIF 665
+ LC + + S S NC++ P LNYP+ S++ N L F
Sbjct: 508 VNLLCSLNFTEEQFKTIARSSASHNCSN--PSAD---LNYPSFIALYSIEGNFTLLEQKF 562
Query: 666 RRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLS 725
+R VTNVG + Y A +KAPK I+V P L F + K+S+++ ++
Sbjct: 563 KRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNV 622
Query: 726 GSLEW--KSPRHVVRSPIV 742
GS+ W ++ H VRSPIV
Sbjct: 623 GSITWVEQNGNHSVRSPIV 641
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 123/209 (58%), Gaps = 7/209 (3%)
Query: 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANF--SGCNNKLIGARYFK---L 192
D++V ++D+GI PES SF+D G P +WKG C F S CN KLIGA YF L
Sbjct: 25 DVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFNKGIL 84
Query: 193 DGNPD-PWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVC 251
+P + S D DGHGTH +S AGN S +G A G ARG P AR+A YK
Sbjct: 85 ANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFS 144
Query: 252 WVSSGCSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASA 311
+ + G D++AA D A+ DGV++ISIS G D IS+ +F A+ KG++ ASA
Sbjct: 145 F-NEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASA 203
Query: 312 GNDGPKWGTVSNHAPWLVTVAASGIDRQF 340
GN GP G+++N +PW++ VA+ DR F
Sbjct: 204 GNRGPGIGSLNNGSPWILCVASGHTDRTF 232
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 8/115 (6%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
I FSSRGP ++ LKP++ APG I+A+ S+ G +T GT+MA
Sbjct: 309 ITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMAT 362
Query: 540 PHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
PH+AG+ A + HPSW+P +K+A++ TA + + + A+ AYGAG+VN KA
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIV--KPDEIADIAYGAGRVNAYKA 415
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 117/288 (40%), Gaps = 51/288 (17%)
Query: 95 QKLQRM--DRVLS---VFPNRYHQLHTTRSWDFIG---------LPQTARRNLKIESDIV 140
+K+QRM D+ +S +F N+ + DF+G +P A + + I+
Sbjct: 25 KKVQRMSWDQEVSTIIMFDNQADKEKAVEILDFLGAKIKYNYHIIPALAVKIKVKDLLII 84
Query: 141 VGLMDTG--------------------ITPESESFKDSGFGPPPAK-WKGKCDHFANFSG 179
GLMDTG + E+E +S W D G
Sbjct: 85 AGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIG 144
Query: 180 CNNKLIGARYFKLDGNPDPW-DIL----SPIDVDGHGTHTSSTLAGNVVANASLYGLAWG 234
+ I A + L G W D + +P D +GHGTH +S AG A+ Y
Sbjct: 145 IIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAASNGKY----- 199
Query: 235 AARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHD----GVNVISISIGGATEDYAS 290
+G P A++ KV S DI+ D A+ + G+ VI++S+G + +
Sbjct: 200 --KGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGT 257
Query: 291 DTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDR 338
D++S +A G+V V +AGN GP TV + A + +D+
Sbjct: 258 DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK 305
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 184/443 (41%), Gaps = 86/443 (19%)
Query: 210 HGTHTSSTLAGNVVANASL-YGLAWGAARGAVPNARVAAYKVCWVSSGCSD--MDILAAF 266
HGTH S L+GN + Y L GA+P A++ +V V+ G +D + A
Sbjct: 97 HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVN-GLADYARNYAQAI 150
Query: 267 DAAIHDGVNVISISIGGATEDYAS--DTISVGAFHALKKGIVTVASAGNDG--------- 315
A++ G VI++S G A YA+ D +A KG+ V SAGND
Sbjct: 151 RDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLP 210
Query: 316 ----PKWGTVSN--HAPWLVTVAASGIDRQFKSKVKTXXXXXXXXXXXXTFDPKEKFYPL 369
P +G V A +TVA+ D+Q T D + K P+
Sbjct: 211 LADHPDYGVVGTPAAADSTLTVASYSPDKQL-----------TETATVKTDDHQAKEMPV 259
Query: 370 VSGADVAKNSESRDSA---RFCFDDSLDPKKVKGKLVYCKLGTWG-----ADSXXXXXXX 421
+S N ++ D A R +D D K VKGK+ + G A++
Sbjct: 260 LSTNRFEPN-KAYDYAYANRGMKED--DFKDVKGKIALIERGDIDFKDKIANAKKAGAVG 316
Query: 422 XXXXXXSEQF--LDVAQIYMAPGTMVNVTDG----DNITDYIHSTRSPSAVIYKSQEVKV 475
++ +++ + P ++ DG DN I +P V+ + + K
Sbjct: 317 VLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPK-VLPTASDTK- 374
Query: 476 RAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGT 535
++ FSS G +KPDIAAPG DIL+S +K+ +SGT
Sbjct: 375 ----LSRFSSWGLTADGN--IKPDIAAPGQDILSS-------------VANNKYAKLSGT 415
Query: 536 SMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPM----SQRVNNEAEFAY------G 585
SM+ P +AG++ ++ + + P S + AK + + + +E E AY G
Sbjct: 416 SMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQG 475
Query: 586 AGQVNPQKAVSPGL-VYDMDDMS 607
AG V+ +KA + + V D D+ S
Sbjct: 476 AGAVDAKKASAATMYVTDKDNTS 498
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 176/443 (39%), Gaps = 86/443 (19%)
Query: 210 HGTHTSSTLAGNVVANASL-YGLAWGAARGAVPNARVAAYKVCWVSSGCSD--MDILAAF 266
HGTH S L+GN + Y L GA P A++ +V V +G +D + A
Sbjct: 88 HGTHVSGILSGNAPSETKEPYRL-----EGAXPEAQLLLXRVEIV-NGLADYARNYAQAI 141
Query: 267 DAAIHDGVNVISISIGGATEDYAS--DTISVGAFHALKKGIVTVASAGNDG--------- 315
AI+ G VI+ S G A YA+ D +A KG+ V SAGND
Sbjct: 142 RDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLP 201
Query: 316 ----PKWGTVSN--HAPWLVTVAASGIDRQFKSKVKTXXXXXXXXXXXXTFDPKEKFYPL 369
P +G V A +TVA+ D+Q V+ T D ++K P+
Sbjct: 202 LADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRV-----------KTADQQDKEXPV 250
Query: 370 VSGADVAKNSESRDSA---RFCFDDSLDPKKVKGKLVYCKLG------TWGADSXXXXXX 420
+S N ++ D A R +D D K VKGK+ + G
Sbjct: 251 LSTNRFEPN-KAYDYAYANRGTKED--DFKDVKGKIALIERGDIDFKDKIAKAKKAGAVG 307
Query: 421 XXXXXXXSEQF-LDVAQIYMAPGTMVNVTDG----DNITDYIHSTRSPSAVIYKSQEVKV 475
+ F +++ + P ++ DG DN I +P + S
Sbjct: 308 VLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLKDNPQKTITFNATPKVLPTAS----- 362
Query: 476 RAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGT 535
++ FSS G +KPDIAAPG DIL+S +K+ +SGT
Sbjct: 363 -GTKLSRFSSWGLTADGN--IKPDIAAPGQDILSS-------------VANNKYAKLSGT 406
Query: 536 SMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPM----SQRVNNEAEFAY------G 585
S + P +AG+ ++ + + P S + AK + + + +E E AY G
Sbjct: 407 SXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQG 466
Query: 586 AGQVNPQKA-VSPGLVYDMDDMS 607
AG V+ +KA + V D D+ S
Sbjct: 467 AGAVDAKKASAATXYVTDKDNTS 489
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICST---------LPGN----KYGAKSGTSMASP 216
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGN------SFYYGKGLINVQAA 264
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXST---------LPGN----KYGAYSGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICST---------LPGN----KYGAKSGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICST---------LPGN----KYGAKSGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I+++ L G+ K+ SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVST---------LPGN----KYGAKSGTAMASP 216
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 264
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAKSGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGD------SFYYGKGLINVQAA 273
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXST---------LPGN----KYGAYSGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGD------SFYYGKGLINVQAA 273
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICST---------LPGN----KYGAKSGTSMASP 216
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N + A
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVEAA 264
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 31/119 (26%)
Query: 476 RAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGT 535
RAPF SS GP + D+ APG+ I ++ L G K+ +SGT
Sbjct: 177 RAPF----SSVGP--------ELDVMAPGVSICST---------LPG----GKYGALSGT 211
Query: 536 SMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
SMA PH+AG A + S HP+W+ ++S++ TA + F YG G +N + A
Sbjct: 212 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGD------SFYYGKGLINVEAA 264
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I+++ L G+ K+ SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVST---------LPGN----KYGAKSGTAMASP 216
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N + A
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVEAA 264
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYSGTXMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAKSGTXMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GTSMA PH+AGV A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATGLGN------TNLYGSGLVNAEAA 267
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH + T+A N S+ L G P+A + A KV S S I
Sbjct: 58 DGNGHGTHVAGTIA---ALNNSIGVL------GVAPSAELYAVKVLGASGSGSVSSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYSGTXMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 31/119 (26%)
Query: 476 RAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGT 535
RAPF SS GP + D+ APG+ I ++ L G K+ +SGT
Sbjct: 177 RAPF----SSVGP--------ELDVMAPGVSICST---------LPG----GKYGALSGT 211
Query: 536 SMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
+MA PH+AG A + S HP+W+ ++S++ TA + F YG G +N + A
Sbjct: 212 AMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGD------SFYYGKGLINVEAA 264
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N + A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVEAA 273
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTXMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGT MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICST---------LPGN----KYGAKSGTXMASP 216
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N + A
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVEAA 264
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTXMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ SGT MA P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSIWST---------LPGN----KYGAKSGTXMASP 213
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N + A
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVEAA 261
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GTSMA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH + T+A N S+ L G P+A + A KV + I
Sbjct: 58 DGNGHGTHVAGTIA---ALNNSIGVL------GVAPSAELYAVKVLGADGRGAISSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GTSMA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GTSMA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH + T+A N S+ L G PNA + A KV S S I
Sbjct: 58 DGNGHGTHVAGTIA---ALNNSIGVL------GVAPNAELYAVKVLGASGSGSVSSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GTSMA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH + T+A N S+ L G PNA + A KV S G S+ I
Sbjct: 58 DGNGHGTHVAGTIA---ALNNSIGVL------GVAPNAELYAVKVLGASGGGSNSSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GTSMA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH + T+A N S+ L G P+A + A KV S S I
Sbjct: 58 DGNGHGTHVAGTIA---ALNNSIGVL------GVAPSAELYAVKVLGASGSGSVSSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVN 590
H+AG A + S HP+W+ ++S++ T + F YG G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLIN 269
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 15/122 (12%)
Query: 480 IASFSSRGPNPG-SKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMA 538
+ + +SRG S + + D+AAPG DIL++ +G + ++ M+GTSMA
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVD-----SGTRRPVS-DAYSFMAGTSMA 278
Query: 539 CPHIAGVVAYV----KSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
PH++GV A V S + + +PA +K +++T P + R+ + A G+G V+ + A
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRL----DRALGSGIVDAEAA 334
Query: 595 VS 596
V+
Sbjct: 335 VN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 15/122 (12%)
Query: 480 IASFSSRGPNPG-SKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMA 538
+ + +SRG S + + D+AAPG DIL++ +G + ++ M+GTSMA
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVD-----SGTRRPVS-DAYSFMAGTSMA 278
Query: 539 CPHIAGVVAYV----KSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
PH++GV A V S + + +PA +K +++T P + R+ + A G+G V+ + A
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRL----DRALGSGIVDAEAA 334
Query: 595 VS 596
V+
Sbjct: 335 VN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 15/122 (12%)
Query: 480 IASFSSRGPNPG-SKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMA 538
+ + +SRG S + + D+AAPG DIL++ +G + ++ M+GTSMA
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVD-----SGTRRPVS-DAYSFMAGTSMA 278
Query: 539 CPHIAGVVAYV----KSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
PH++GV A V S + + +PA +K +++T P + R+ + A G+G V+ + A
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRL----DRALGSGIVDAEAA 334
Query: 595 VS 596
V+
Sbjct: 335 VN 336
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS GP + D+ APG+ I ++ L G+ K+ +GTS A P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGN----KYGAYNGTSXASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ ++S++ T + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAA 273
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + D+ APG+ I ++ L G T + +GTSMA P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQST---------LPGGT----YGAYNGTSMATP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ A ++ + +TA + + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLG------SSFYYGKGLINVQAA 273
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D HGTH + T+A N S+ G P+A + A KV + I+
Sbjct: 60 DGSSHGTHVAGTIA---ALNNSI------GVLGVAPSASLYAVKVLDSTGSGQYSWIING 110
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ AI + ++VI++S+GG T A T+ A+ GIV A+AGN+G
Sbjct: 111 IEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAGNEG 157
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GT MA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GT MA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH + T+A N S+ L G PNA + A KV S S I
Sbjct: 58 DGNGHGTHVAGTIA---ALNNSIGVL------GVAPNAELYAVKVLGASGSGSVSSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GT MA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH +AG + A + G+ G P+A + A KV S + I
Sbjct: 58 DGNGHGTH----VAGTIAALDNSIGV-----LGVAPSAELYAVKVLGASGSGAISSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN+G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNEG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG+++ ++Y S + ++GT MA PH+AG A VK +PSWS
Sbjct: 191 DIVAPGVNVQSTY-------------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
I++ + TA + + YG+G VN + A
Sbjct: 238 VQIRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH +AG + A + G+ G P+A + A KV S + I
Sbjct: 58 DGNGHGTH----VAGTIAALDNSIGV-----LGVAPSAELYAVKVLGASGSGAISSIAQG 108
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A ++G++V ++S+G + S T+ A +G++ VA++GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
+A FSSRGP + +KPD+ APG IL++ + + + + SK+ M GTSMA
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHD-SKYAYMGGTSMAT 258
Query: 540 PHIAGVVA-----YVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
P +AG VA +VK+ + P+ +K+A++ A + N + G G+V K+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQ---GWGRVTLDKS 315
Query: 595 VSPGLVYDMDDMSYIQ 610
++ V + +S Q
Sbjct: 316 LNVAYVNESSSLSTSQ 331
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKV--CWVSSGCSDMDIL 263
D +GHGTH +AG+V+ N S +G P A + + G ++
Sbjct: 64 DTNGHGTH----VAGSVLGNGS-------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQ 112
Query: 264 AAFDAAIHDGVNVISISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDGPKWGTVS 322
F A G + + S G A Y +D+ +V + K + + +AGN+GP GT+S
Sbjct: 113 TLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGTIS 171
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + D+ APG+ I ++ L G T + +GT MA P
Sbjct: 187 ASFSSVGS--------ELDVMAPGVSIQST---------LPGGT----YGAYNGTXMATP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ A ++ + +TA + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGN------SFYYGKGLINVQAA 273
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D HGTH + T+A N S+ G P+A + A KV + I+
Sbjct: 60 DGSSHGTHVAGTIA---ALNNSI------GVLGVAPSASLYAVKVLDSTGSGQYSWIING 110
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ AI + ++VI++S+GG T A T+ A+ GIV A+AGN+G
Sbjct: 111 IEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAGNEG 157
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + D+ APG+ I ++ L G T + +GT MA P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQST---------LPGGT----YGAYNGTCMATP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+W+ A ++ + +TA + F YG G +N Q A
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGN------SFYYGKGLINVQAA 273
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D HGTH + T+A N S+ G P+A + A KV + I+
Sbjct: 60 DGSSHGTHVAGTIA---ALNNSI------GVLGVSPSASLYAVKVLDSTGSGQYSWIING 110
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ AI + ++VI++S+GG T A T+ A+ GIV A+AGN+G
Sbjct: 111 IEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAGNEG 157
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 19/126 (15%)
Query: 203 SPIDVDGHGTHTSST-LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVS-SGCSDM 260
S D +GHGTH + T LA A +YG+A P+A + AYKV S SG SD
Sbjct: 64 SCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSD- 114
Query: 261 DILAAF----DAAIHDGV-NVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
DI AA D A G +IS+S+G + + IS +A KG++ VA+AGN G
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANN---SLISSAVNYAYSKGVLIVAAAGNSG 171
Query: 316 PKWGTV 321
GT+
Sbjct: 172 YSQGTI 177
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 480 IASFSSRG--PNPGSKHLLKPDI--AAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGT 535
+A +SSRG G + + DI +APG + +++ + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 536 SMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPM 572
SMA PH++G+ A + + +PS S ++S + AK +
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV 286
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 19/126 (15%)
Query: 203 SPIDVDGHGTHTSST-LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVS-SGCSDM 260
S D +GHGTH + T LA A +YG+A P+A + AYKV S SG SD
Sbjct: 64 SCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSD- 114
Query: 261 DILAAF----DAAIHDGV-NVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
DI AA D A G +IS+S+G + + IS +A KG++ VA+AGN G
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANN---SLISSAVNYAYSKGVLIVAAAGNSG 171
Query: 316 PKWGTV 321
GT+
Sbjct: 172 YSQGTI 177
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 480 IASFSSRG--PNPGSKHLLKPDI--AAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGT 535
+A +SSRG G + + DI +APG + +++ + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 536 SMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPM 572
MA PH++G+ A + + +PS S ++S + AK +
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV 286
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG+ + ++Y + +T ++GTSMA P
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTY-------------PSNTYTSLNGTSMASP 224
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S +P+ S + +++ + +TA + F YG G +N + A
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTATNLGD------SFYYGKGLINVEAA 272
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH AG V A + G+ G PN + A KV S S I++
Sbjct: 59 DGNGHGTHV----AGTVAALDNTTGV-----LGVAPNVSLYAIKVLNSSGSGSYSAIVSG 109
Query: 266 FDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
+ A +G++VI++S+GG + S + A GIV VA+AGN G
Sbjct: 110 IEWATQNGLDVINMSLGGPS---GSTALKQAVDKAYASGIVVVAAAGNSG 156
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG + ++Y + + ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYPT-------------NTYATLNGTSMASP 224
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+ S + +++ + +TA + + F YG G +N + A
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG + ++Y + + ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYPT-------------NTYATLNGTSMASP 224
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+ S + +++ + +TA + + F YG G +N + A
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG + ++Y + + ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYPT-------------NTYATLNGTSMASP 224
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+ S + +++ + +TA + + F YG G +N + A
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG + ++Y + + ++GTSMA P
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYPT-------------NTYATLNGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+ S + +++ + +TA + + F YG G +N + A
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 273
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG + ++Y + + ++GTSMA P
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYPT-------------NTYATLNGTSMASP 225
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+ S + +++ + +TA + + F YG G +N + A
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 273
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG + ++Y + + ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYPT-------------NTYATLNGTSMASP 224
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+ S + +++ + +TA + + F YG G +N + A
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 327
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 124 DLAANIAWCVSTLRGKVSTKL---------RDCADQNGHGTHVIGTIAALNNDIGVVGVA 174
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 175 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVIS 232
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 233 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 266
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 327
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 124 DLAANIAWCVSTLRGKVSTKLRDCADQ---------NGHGTHVIGTIAALNNDIGVVGVA 174
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 175 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD--DDAAEVIS 232
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 233 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 266
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 327
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 124 DLAANIAWCVSTLRGKVSTKLRDCADQ---------NGHGTHVIGTIAALNNDIGVVGVA 174
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A A D VIS
Sbjct: 175 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDA--DAAEVIS 232
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 233 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 266
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 327
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 33/160 (20%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 124 DLAANIAWCVSTLRGKVSTKLRDCADQ---------NGHGTHVIGTIAALNNDIGVVGVA 174
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAA--FDAAIHDGVNV 276
+Y + ARG+ + +A + G +D D I+A DAA V
Sbjct: 175 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDAA----AEV 230
Query: 277 ISISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
IS+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 231 ISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 266
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
+A FSSRGP + +KPD+ APG IL++ + + + + SK+ GTS A
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHD-SKYAYXGGTSXAT 258
Query: 540 PHIAGVVA-----YVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
P +AG VA +VK+ + P+ +K+A++ A + N + G G+V K+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQ---GWGRVTLDKS 315
Query: 595 VSPGLVYDMDDMSYIQ 610
++ V + +S Q
Sbjct: 316 LNVAYVNESSSLSTSQ 331
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKV--CWVSSGCSDMDIL 263
D +GHGTH +AG+V+ N S +G P A + + G ++
Sbjct: 64 DTNGHGTH----VAGSVLGNGS-------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQ 112
Query: 264 AAFDAAIHDGVNVISISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDGPKWGTVS 322
F A G + + S G A Y +D+ +V + K + + +AGN+GP GT+S
Sbjct: 113 TLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGTIS 171
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 249
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 250 PHVSGVVALIQAAY 263
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 46 DLAANIAWCVSTLRGKVSTKL---------RDCADQNGHGTHVIGTIAALNNDIGVVGVA 96
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 97 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVIS 154
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 155 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 188
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 258
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 55 DLAANIAWCVSTLRGKVSTKL---------RDCADQNGHGTHVIGTIAALNNDIGVVGVA 105
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 106 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVIS 163
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 164 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 197
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 324
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 325 PHVSGVVALIQAAY 338
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 121 DLAANIAWCVSTLRGKVSTKLRDCADQ---------NGHGTHVIGTIAALNNDIGVVGVA 171
Query: 224 ANASLYGLAWGAAR--GAVPNARVAAYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + AR G+ + + + G +D D I+A D VIS
Sbjct: 172 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVIS 229
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 230 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 247
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 44 DLAANIAWCVSTLRGKVSTKL---------RDCADQNGHGTHVIGTIAALNNDIGVVGVA 94
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 95 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVIS 152
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 153 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 186
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTAMAT 258
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 55 DLAANIAWCVSTLRGKVSTKL---------RDCADQNGHGTHVIGTIAALNNDIGVVGVA 105
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 106 PGVQIYSVRVLDARGSGSYSDIAIGIAQAILGPDGVADKDGDGIIAGDPD--DDAAEVIS 163
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 164 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 197
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 52/217 (23%)
Query: 117 TRSWDFIGLPQT--ARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHF 174
+R WD + + +L ++ + ++DTG+ + K+
Sbjct: 100 SRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKN----------------- 142
Query: 175 ANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWG 234
NFS + L+ F+ + D+ D GHGT ++G AN L G+A
Sbjct: 143 -NFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGT----MVSGQTSANGKLIGVA-- 195
Query: 235 AARGAVPNARVAAYKVCWVSSGCSDMDIL---AAFDAAIHDGVNVISISIGG-------- 283
PN + Y+V G ++L A A +DG VI+IS+G
Sbjct: 196 ------PNNKFTMYRVF----GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKND 245
Query: 284 -----ATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
E D + +A KK + VA+AGNDG
Sbjct: 246 HQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDG 282
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 52/217 (23%)
Query: 117 TRSWDFIGLPQT--ARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHF 174
+R WD + + +L ++ + ++DTG+ + K+
Sbjct: 124 SRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKN----------------- 166
Query: 175 ANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWG 234
NFS + L+ F+ + D+ D GHGT ++G AN L G+A
Sbjct: 167 -NFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGT----MVSGQTSANGKLIGVA-- 219
Query: 235 AARGAVPNARVAAYKVCWVSSGCSDMDIL---AAFDAAIHDGVNVISISIGG-------- 283
PN + Y+V G ++L A A +DG VI+IS+G
Sbjct: 220 ------PNNKFTMYRVF----GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKND 269
Query: 284 -----ATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
E D + +A KK + VA+AGNDG
Sbjct: 270 HQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDG 306
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTXMAT 247
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 44 DLAANIAWCVSTLRGKVSTKL---------RDCADQNGHGTHVIGTIAALNNDIGVVGVA 94
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 95 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVIS 152
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 153 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 186
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 27/114 (23%)
Query: 481 ASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACP 540
ASFSS G + ++ APG + ++Y + + ++GT MA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYPT-------------NTYATLNGTXMASP 224
Query: 541 HIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA 594
H+AG A + S HP+ S + +++ + +TA + + F YG G +N + A
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
IASFS+R +P+++APG+DIL++Y D Y TLM GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYP----------DDSYE--TLM-GTCMAT 247
Query: 540 PHIAGVVAYVKSFH 553
PH++GVVA +++ +
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 172 DHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAG--------NVV 223
D AN + C + L G KL D +GHGTH T+A V
Sbjct: 44 DLAANIAWCVSTLRGKVSTKL---------RDCADQNGHGTHVIGTIAALNNDIGVVGVA 94
Query: 224 ANASLYGLAWGAARGAVPNARVA--AYKVCWVSSGCSDMD---ILAAFDAAIHDGVNVIS 278
+Y + ARG+ + +A + G +D D I+A D VIS
Sbjct: 95 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG--DPDDDAAEVIS 152
Query: 279 ISIGGATED-YASDTISVGAFHALKKGIVTVASAGNDG 315
+S+GG +D Y D I A GIV VA++GN+G
Sbjct: 153 MSLGGPADDSYLYDMI----IQAYNAGIVIVAASGNEG 186
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 28/117 (23%)
Query: 480 IASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMAC 539
+ASFS+ G D+ APG+DI+++ +TG +++ MSGTSMA
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVST------ITG-------NRYAYMSGTSMAS 229
Query: 540 PHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVS 596
PH+AG+ A + S + I+ AI TA +S F Y G++N AV+
Sbjct: 230 PHVAGLAALLAS--QGRNNIEIRQAIEQTADKIS---GTGTYFKY--GRINSYNAVT 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 204 PIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDIL 263
P+D++ HGTH + A + G+A PN R+ A + + + DI
Sbjct: 66 PMDLNNHGTHVAGIAAAETNNATGIAGMA--------PNTRILAVRALDRNGSGTLSDIA 117
Query: 264 AAFDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDG 315
A A G VI++S+G D + T+ +A KG V VA+AGN+G
Sbjct: 118 DAIIYAADSGAEVINLSLGC---DCHTTTLENAVNYAWNKGSVVVAAAGNNG 166
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 521 KGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMS 573
+G+ Y + +GTSMA PH++GV V S+HP S + +++A+ TA +S
Sbjct: 357 QGNQDYEYY---NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLS 406
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 30/144 (20%)
Query: 176 NFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGA 235
N +G NN G Y P + + HGTH + T+A +AN
Sbjct: 44 NVTGTNNSGTGNWY-------------QPGNNNAHGTHVAGTIA--AIANNE-------G 81
Query: 236 ARGAVP--NARVAAYKVCWVSSGCSDMDILAAFDAAIHD-GVNVISISIGGATEDYASDT 292
G +P NA + KV + ++AA D ++ G NV+++S+GG+ S T
Sbjct: 82 VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGS----GSTT 137
Query: 293 ISVGAFHA-LKKGIVTVASAGNDG 315
A + G++ +A+AGN G
Sbjct: 138 TERNALNTHYNNGVLLIAAAGNAG 161
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 490 PGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYV 549
P S + + +AAPG +IL++ + G G + S + + +GTSMA PH++GV A V
Sbjct: 237 PFSNYGARVHLAAPGTNILSTIDV-----GQAGPVR-SSYGMKAGTSMAAPHVSGVAALV 290
Query: 550 KSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVS 596
S S S + + R N + G+G V+ AV+
Sbjct: 291 ISAANSIGKTLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANAAVN 337
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI APG I +S+ S T +SGTSMA PH+AGV A +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 559 AAIKSAIMTTA 569
A + + + T A
Sbjct: 247 AQVTNLLKTRA 257
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAA 265
D +GHGTH + T+ G S YG+A N V +V S S+ ++A
Sbjct: 68 DCNGHGTHVAGTIGG------STYGVA--------KNVNVVGVRVLNCSGSGSNSGVIAG 113
Query: 266 FDAAIHD--GVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGND 314
+ ++ G V ++S+GG AS A+ GI V +AGND
Sbjct: 114 INWVKNNASGPAVANMSLGGG----ASQATDDAVNAAVAAGITFVVAAGND 160
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 490 PGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYV 549
P S + + +AAPG +IL++ + G G + S + + +GTSMA PH++GV A V
Sbjct: 237 PFSNYGARVHLAAPGTNILSTIDV-----GQAGPVR-SSYGMKAGTSMAAPHVSGVAALV 290
Query: 550 KSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVS 596
S S S + + R N + G+G V+ AV+
Sbjct: 291 ISAANSIGKTLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANAAVN 337
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 527 SKFTLMSGTSMACPHIAGVVAY----VKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEF 582
SK L +GTS A PH+AG VA +K + +SP +IK AI TA ++ F
Sbjct: 453 SKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT----KLGYVDPF 508
Query: 583 AYGAGQVNPQKAVSPGLVYDMDDMSYIQFLCHEGYN---GSSLAVLVGSKSINCTSLIPG 639
A G G +N +KA + + ++F G N G L V SI+ I
Sbjct: 509 AQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNNADKGIHLRQGVQRNSIDYNVYIEP 568
Query: 640 VGYD 643
+ Y+
Sbjct: 569 IFYN 572
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 21/136 (15%)
Query: 210 HGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAY-----KVCWVSSGCSDMDILA 264
HGTH SS +GN + G PNA++ + ++ +G + +
Sbjct: 272 HGTHVSSIASGNHSSRD---------VDGVAPNAKIVSXTIGDGRLGSXETGTALVRAXT 322
Query: 265 AFDAAIHDG--VNVISISIGGATEDYASDTISVGAFHALKK-GIVTVASAGNDGPKWGTV 321
DG ++VI+ S G S I + K G+V VASAGN GP TV
Sbjct: 323 KVXELCRDGRRIDVINXSYGEHANWSNSGRIGELXNEVVNKYGVVWVASAGNHGPALCTV 382
Query: 322 SN----HAPWLVTVAA 333
P L+ V A
Sbjct: 383 GTPPDISQPSLIGVGA 398
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 532 MSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTA 569
++GTSMA PH+AGV A +PS +PA++ SAI+ A
Sbjct: 218 LNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 439 MAPGTMVNVTDGDNITDYIHSTRS--PSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLL 496
M G ++ V+ G+N +D H + P + + + +A FSSR
Sbjct: 285 MEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGV------ 338
Query: 497 KPDIAAPGIDILASYTLMKSLTGLKGD------TQYSKFTLMSGTSMACPHIAGVVAYVK 550
+ APG+ IL++ S+ G +G T + GTSMA PH+ GVVA +
Sbjct: 339 --SVGAPGVTILSTVPGEDSI-GYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLL 395
Query: 551 SFHPSWSPAAIKSAIMTTA 569
P+ P I+ + TA
Sbjct: 396 QKFPNAKPWQIRKLLENTA 414
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
D+AAPG I ++Y S + +SGTSMA PH+AGV + S S S
Sbjct: 201 DVAAPGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLLASQGRSASN 247
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAV 595
I++AI TA +S A+ G+VN KAV
Sbjct: 248 --IRAAIENTADKISGTGTYWAK-----GRVNAYKAV 277
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 199 WDIL----SPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVS 254
WD + +P + +GHGTH + +A V N++ G+A G P A + A +V S
Sbjct: 56 WDFVDNDSTPQNGNGHGTHCAG-IAAAVTNNST--GIA-----GTAPKASILAVRVLDNS 107
Query: 255 SGCSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTV 308
+ + A G VIS+S+GG + + +A KG V V
Sbjct: 108 GSGTWTAVANGITYAADQGAKVISLSLGGTVGN---SGLQQAVNYAWNKGSVVV 158
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 210 HGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAA 269
HGTH +S + G ++ + G+A VP + K+ S +D+ A + A
Sbjct: 64 HGTHVASIIFGQ--HDSPVTGIAPQCRGLIVPVFADESLKL-------SQLDLSRAIEQA 114
Query: 270 IHDGVNVISISIGGATEDYASDTISVGAFHALKK-GIVTVASAGNDGPKWGTVSNHAPWL 328
+++G N+I++S G T+ +DT A ++ ++ +A+ GNDG + V P +
Sbjct: 115 VNNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTV 174
Query: 329 VTVAASGIDRQFK 341
+ V A +D Q K
Sbjct: 175 LAVGA--MDDQGK 185
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 497 KPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFH--- 553
K I APG DIL G +SGTS A P ++GV A + S
Sbjct: 198 KQGILAPGKDIL-------------GAKPNGGTIRLSGTSFATPIVSGVAALLLSLQIKR 244
Query: 554 -PSWSPAAIKSAIMTTAKPMSQR 575
P +K+A++ +A P + +
Sbjct: 245 GEKPDPQKVKNALLASATPCNPK 267
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 18/79 (22%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYV-----KSFH 553
DI APG+ I ++Y D+ Y++ +SGT+MA PH+AG +A + +F
Sbjct: 226 DIVAPGVGIKSTYL----------DSGYAE---LSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 554 PSWSPAAIKSAIMTTAKPM 572
S S I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 18/79 (22%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYV-----KSFH 553
DI APG+ I ++Y D+ Y++ +SGT+MA PH+AG +A + +F
Sbjct: 226 DIVAPGVGIKSTYL----------DSGYAE---LSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 554 PSWSPAAIKSAIMTTAKPM 572
S S I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 18/79 (22%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYV-----KSFH 553
DI APG+ I ++Y D+ Y++ +SGT+MA PH+AG +A + +F
Sbjct: 226 DIVAPGVGIKSTYL----------DSGYAE---LSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 554 PSWSPAAIKSAIMTTAKPM 572
S S I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 18/79 (22%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYV-----KSFH 553
DI APG+ I ++Y D+ Y++ +SGT+MA PH+AG +A + +F
Sbjct: 208 DIVAPGVGIKSTYL----------DSGYAE---LSGTAMAAPHVAGALALIINLAEDAFK 254
Query: 554 PSWSPAAIKSAIMTTAKPM 572
S S I + ++ A P+
Sbjct: 255 RSLSETEIYAQLVRRATPI 273
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
D+AAPG I ++Y S + +SGTSMA PH+AGV + S S S
Sbjct: 201 DVAAPGSWIYSTYPT-------------STYASLSGTSMATPHVAGVAGLLASQGRSASN 247
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAV 595
I++AI TA +S A+ G+VN KAV
Sbjct: 248 --IRAAIENTADKISGTGTYWAK-----GRVNAYKAV 277
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 199 WDIL----SPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVS 254
WD + +P + +GHGTH + +A V N++ G+A G P A + A +V S
Sbjct: 56 WDFVDNDSTPQNGNGHGTHCAG-IAAAVTNNST--GIA-----GTAPKASILAVRVLDNS 107
Query: 255 SGCSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTV 308
+ + A G VIS+S+GG + + +A KG V V
Sbjct: 108 GSGTWTAVANGITYAADQGAKVISLSLGGTVGN---SGLQQAVNYAWNKGSVVV 158
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI PG DIL+++ + G T+ +SGTSMA PH+AG+ AY+ + + +
Sbjct: 200 DIFGPGTDILSTW--------IGGSTR-----SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 559 AAIK 562
+A +
Sbjct: 247 SACR 250
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI PG IL+++ + G T+ +SGTSMA PH+AG+ AY+ + + +
Sbjct: 200 DIFGPGTSILSTW--------IGGSTR-----SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 559 AAIK 562
+A +
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DI PG IL+++ + G T+ +SGTSMA PH+AG+ AY+ + + +
Sbjct: 200 DIFGPGTSILSTW--------IGGSTR-----SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 559 AAIK 562
+A +
Sbjct: 247 SACR 250
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 480 IASFSSRG--PNPGSKHLLKPD--IAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGT 535
+A FSSRG G + K D I+APG + +++ G + +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW--------FDG-----GYATISGT 248
Query: 536 SMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTA 569
SMA PH AG+ A + + P+ S ++ + T A
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 203 SPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDI 262
S D GHGTH + + N + +YG+A P A + AYKV G D
Sbjct: 64 SCTDRQGHGTHVAGSALANGGTGSGVYGVA--------PEADLWAYKVLG-DDGSGYADD 114
Query: 263 LAAFDAAIHDGVNVISISIG-----GATEDYASDTISVGAFHALKKGIVTVASAGNDGPK 317
+A +A H G +++ S I+ +A KG++ +A+AGN GPK
Sbjct: 115 IA--EAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAYDKGVLIIAAAGNSGPK 172
Query: 318 WGTV 321
G++
Sbjct: 173 PGSI 176
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYV 549
DI APG I +++ ++ T +SGTSMA PHIAG+ AY+
Sbjct: 201 DIFAPGTSITSTWIGGRTNT-------------ISGTSMATPHIAGLAAYL 238
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 13/55 (23%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFH 553
DI APG +IL+++ + G T +SGTSMA PHI G+ AY+
Sbjct: 203 DIFAPGSNILSTW--------IGGTTN-----TISGTSMATPHIVGLGAYLAGLE 244
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 589 VNPQKAVSPGLVYDMDDMSY-----IQFLCHEGYNGSSLAVLVGSKSINCTS 635
P +S G Y + S+ + + CH G +G L LVG +SI CTS
Sbjct: 1478 CEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTGPDGEQLFELVGERSIYCTS 1529
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 71 KESIVYSYTESFNAFAAKLSNDEAQKLQRMDRVLSVFPNRYHQLHTTRSWDFIGLPQTAR 130
++ + Y + F A S D++ LQR +S PN L ++ F+G+ +
Sbjct: 17 QQDVNYDLVDDFGANGNDTS-DDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSN 75
Query: 131 RNLKIESDIVVG-----------LMDTGITPESESFKDSGFG 161
++++ESD+++ L + G+ +F G G
Sbjct: 76 VHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLG 117
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 71 KESIVYSYTESFNAFAAKLSNDEAQKLQRMDRVLSVFPNRYHQLHTTRSWDFIGLPQTAR 130
++ + Y + F A S D++ LQR +S PN L ++ F+G+ +
Sbjct: 18 QQDVNYDLVDDFGANGNDTS-DDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSN 76
Query: 131 RNLKIESDIVVG-----------LMDTGITPESESFKDSGFG 161
++++ESD+++ L + G+ +F G G
Sbjct: 77 VHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLG 118
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 497 KPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSW 556
K I APG +IL + + L +GTSMA P + G+ A + S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 557 ----SPAAIKSAIMTTAKPMSQRVNNEAE 581
A+++A++ TA P V E E
Sbjct: 313 GKPVDAEAVRTALLKTAIPCDPEVVEEPE 341
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 497 KPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSW 556
K I APG +IL + + L +GTSMA P + G+ A + S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 557 ----SPAAIKSAIMTTAKPMSQRVNNEAE 581
A+++A++ TA P V E E
Sbjct: 313 GKPVDAEAVRTALLKTAIPCDPEVVEEPE 341
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 497 KPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSW 556
K I APG +IL + + L +GTSMA P + G+ A + S
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 294
Query: 557 ----SPAAIKSAIMTTAKPMSQRVNNEAE 581
A+++A++ TA P V E E
Sbjct: 295 GKPVDAEAVRTALLKTAIPCDPEVVEEPE 323
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 499 DIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP 558
DIAAPG +++T L+ D +K SGTS A ++GV+A + S +P +
Sbjct: 248 DIAAPG----------QNITFLRPD---AKTGTGSGTSEATAIVSGVLAAMTSCNPRATA 294
Query: 559 AAIKSAIMTTAKPMSQRVNNEAEFAYGAGQV-NPQKAVS 596
+K ++ +A V+ E G+V N +KA+S
Sbjct: 295 TELKRTLLESADKYPSLVDKVTE-----GRVLNAEKAIS 328
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 529 FTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570
+ +SGTSMA PH+AGV A + +P + + + A
Sbjct: 213 YKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRAS 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,428,588
Number of Sequences: 62578
Number of extensions: 867238
Number of successful extensions: 2517
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 226
length of query: 748
length of database: 14,973,337
effective HSP length: 106
effective length of query: 642
effective length of database: 8,340,069
effective search space: 5354324298
effective search space used: 5354324298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)