Query 004503
Match_columns 748
No_of_seqs 503 out of 3083
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 00:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 6.9E-52 1.5E-56 444.4 28.8 295 112-570 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 4.5E-50 9.7E-55 447.2 23.7 298 118-601 294-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 4.2E-49 9.1E-54 413.5 23.7 270 133-596 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 2.9E-48 6.3E-53 404.1 25.4 242 131-573 1-254 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 4E-48 8.6E-53 412.1 23.6 287 136-569 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 5.9E-47 1.3E-51 413.5 27.4 308 130-596 2-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 2.8E-46 6.1E-51 417.4 30.1 399 134-587 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 5.6E-46 1.2E-50 399.7 27.1 285 129-600 4-302 (312)
9 cd07483 Peptidases_S8_Subtilis 100.0 6.8E-46 1.5E-50 394.0 24.5 267 137-570 1-291 (291)
10 cd07476 Peptidases_S8_thiazoli 100.0 1.2E-45 2.5E-50 386.4 25.3 247 130-576 2-256 (267)
11 cd05561 Peptidases_S8_4 Peptid 100.0 7.7E-46 1.7E-50 382.4 23.0 234 139-587 1-239 (239)
12 cd07474 Peptidases_S8_subtilis 100.0 6.9E-45 1.5E-49 388.5 29.0 283 136-594 1-295 (295)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.7E-44 3.7E-49 378.4 23.9 242 138-570 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 4.5E-44 9.8E-49 375.7 25.0 247 136-570 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 1.1E-44 2.4E-49 376.6 19.2 328 31-570 77-461 (501)
16 cd04857 Peptidases_S8_Tripepti 100.0 4.1E-43 8.9E-48 380.3 28.0 221 205-572 182-412 (412)
17 cd07485 Peptidases_S8_Fervidol 100.0 5.6E-43 1.2E-47 369.2 25.7 262 130-568 2-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 8.8E-43 1.9E-47 366.2 24.9 256 136-570 1-264 (264)
19 cd07484 Peptidases_S8_Thermita 100.0 1.3E-42 2.9E-47 364.0 25.1 252 117-572 8-259 (260)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.4E-42 5.2E-47 361.0 25.4 229 132-571 20-255 (255)
21 cd07490 Peptidases_S8_6 Peptid 100.0 5.5E-42 1.2E-46 358.1 24.5 253 138-570 1-254 (254)
22 cd04847 Peptidases_S8_Subtilis 100.0 2.1E-42 4.6E-47 368.3 20.9 263 139-570 1-291 (291)
23 cd07494 Peptidases_S8_10 Pepti 100.0 5.6E-42 1.2E-46 364.0 24.0 251 128-575 11-288 (298)
24 cd07496 Peptidases_S8_13 Pepti 100.0 9.9E-42 2.1E-46 362.0 25.5 260 138-568 1-285 (285)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 1.4E-41 3E-46 362.7 25.5 277 132-570 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 1.9E-41 4E-46 351.5 22.9 240 139-568 1-242 (242)
27 cd07473 Peptidases_S8_Subtilis 100.0 1.1E-40 2.3E-45 349.4 25.8 251 137-570 2-259 (259)
28 cd07480 Peptidases_S8_12 Pepti 100.0 7.7E-41 1.7E-45 357.1 24.6 260 132-592 3-296 (297)
29 cd04843 Peptidases_S8_11 Pepti 100.0 6.9E-41 1.5E-45 351.7 21.3 246 125-570 2-277 (277)
30 cd07491 Peptidases_S8_7 Peptid 100.0 1.8E-40 3.9E-45 343.1 20.6 158 136-337 2-172 (247)
31 cd07477 Peptidases_S8_Subtilis 100.0 4.7E-40 1E-44 338.1 23.5 226 138-568 1-229 (229)
32 PF00082 Peptidase_S8: Subtila 100.0 4.4E-41 9.5E-46 356.6 16.0 274 140-596 1-282 (282)
33 cd07482 Peptidases_S8_Lantibio 100.0 6.3E-40 1.4E-44 350.1 23.3 253 138-568 1-294 (294)
34 cd07492 Peptidases_S8_8 Peptid 100.0 1.4E-38 3E-43 325.6 23.9 221 138-570 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 3.1E-39 6.6E-44 345.3 19.6 247 127-570 28-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 6.8E-38 1.5E-42 329.2 22.9 242 135-570 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.9E-38 4E-43 337.8 11.9 372 33-616 48-496 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 2.6E-33 5.6E-38 311.0 22.1 238 208-596 310-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 2.4E-33 5.3E-38 288.9 15.6 196 203-569 32-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 3.2E-31 6.9E-36 272.9 24.2 234 139-568 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.2E-23 2.6E-28 240.1 22.8 268 128-596 130-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 8.2E-24 1.8E-28 215.2 9.8 333 92-617 86-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 3.1E-17 6.7E-22 179.4 14.4 101 234-338 81-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.0 1E-09 2.2E-14 104.1 10.1 110 363-490 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.0 1.7E-09 3.6E-14 100.3 10.9 116 344-466 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.8 1.3E-08 2.7E-13 86.7 7.7 79 36-115 1-82 (82)
47 KOG3525 Subtilisin-like propro 98.6 4.2E-07 9.2E-12 100.8 12.4 159 124-318 19-188 (431)
48 PF06280 DUF1034: Fn3-like dom 98.4 3.4E-06 7.4E-11 76.4 10.8 80 662-742 9-112 (112)
49 COG4934 Predicted protease [Po 98.3 7.3E-06 1.6E-10 97.9 14.3 94 236-333 288-395 (1174)
50 cd04816 PA_SaNapH_like PA_SaNa 98.2 3.1E-06 6.7E-11 78.0 7.4 81 385-466 29-121 (122)
51 cd02130 PA_ScAPY_like PA_ScAPY 98.2 1.4E-05 3.1E-10 73.5 10.4 79 386-466 32-121 (122)
52 cd04818 PA_subtilisin_1 PA_sub 98.1 7.8E-06 1.7E-10 74.8 7.7 80 385-466 27-117 (118)
53 cd02122 PA_GRAIL_like PA _GRAI 98.0 1.9E-05 4.2E-10 73.9 8.1 82 385-467 44-138 (138)
54 cd02129 PA_hSPPL_like PA_hSPPL 98.0 1.9E-05 4.1E-10 71.7 7.7 75 385-460 30-115 (120)
55 PF02225 PA: PA domain; Inter 98.0 5.2E-06 1.1E-10 73.5 3.5 72 385-457 19-101 (101)
56 cd00538 PA PA: Protease-associ 98.0 1.8E-05 3.9E-10 73.0 7.2 80 385-465 30-124 (126)
57 cd02127 PA_hPAP21_like PA_hPAP 97.9 4.8E-05 1E-09 69.3 8.0 82 385-468 21-117 (118)
58 cd02132 PA_GO-like PA_GO-like: 97.9 6E-05 1.3E-09 71.0 8.9 77 385-465 48-137 (139)
59 cd02124 PA_PoS1_like PA_PoS1_l 97.8 5.2E-05 1.1E-09 70.3 7.6 81 384-466 40-128 (129)
60 cd02126 PA_EDEM3_like PA_EDEM3 97.8 5.3E-05 1.2E-09 70.0 7.2 79 385-465 27-124 (126)
61 cd02125 PA_VSR PA_VSR: Proteas 97.7 0.00018 4E-09 66.4 8.9 81 385-466 22-126 (127)
62 cd04813 PA_1 PA_1: Protease-as 97.6 0.00016 3.4E-09 65.8 6.6 73 385-460 27-112 (117)
63 cd04817 PA_VapT_like PA_VapT_l 97.5 0.0002 4.4E-09 66.9 6.5 67 393-460 50-134 (139)
64 cd02123 PA_C_RZF_like PA_C-RZF 97.5 0.00028 6.1E-09 67.5 7.4 77 385-462 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.5 0.00076 1.6E-08 62.5 9.8 86 363-461 21-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 96.0 0.021 4.6E-07 53.3 7.2 71 394-465 34-132 (134)
67 PF14874 PapD-like: Flagellar- 95.9 0.15 3.3E-06 44.9 12.1 81 662-745 21-101 (102)
68 PF10633 NPCBM_assoc: NPCBM-as 94.6 0.14 3E-06 42.9 7.0 57 662-718 6-63 (78)
69 cd02128 PA_TfR PA_TfR: Proteas 94.1 0.084 1.8E-06 51.7 5.4 65 395-460 51-156 (183)
70 PF11614 FixG_C: IG-like fold 93.1 1 2.2E-05 40.9 10.5 58 661-719 31-88 (118)
71 cd04814 PA_M28_1 PA_M28_1: Pro 93.1 0.22 4.7E-06 46.8 6.0 61 364-431 19-100 (142)
72 cd04820 PA_M28_1_1 PA_M28_1_1: 92.3 0.47 1E-05 44.3 7.1 60 365-431 22-96 (137)
73 cd04822 PA_M28_1_3 PA_M28_1_3: 92.3 0.72 1.6E-05 43.9 8.5 83 366-455 21-130 (151)
74 PF06030 DUF916: Bacterial pro 89.4 4.5 9.7E-05 37.0 10.6 68 662-731 28-119 (121)
75 KOG2442 Uncharacterized conser 88.3 1.1 2.5E-05 49.4 6.8 73 395-468 91-176 (541)
76 cd02131 PA_hNAALADL2_like PA_h 83.2 1.2 2.7E-05 42.0 3.4 35 396-431 37-75 (153)
77 cd02121 PA_GCPII_like PA_GCPII 82.1 1.9 4.2E-05 43.7 4.7 37 395-431 67-106 (220)
78 PF00345 PapD_N: Pili and flag 82.1 12 0.00027 33.9 9.8 66 664-731 17-89 (122)
79 KOG1114 Tripeptidyl peptidase 80.8 1.2 2.6E-05 52.9 3.0 47 695-744 636-687 (1304)
80 PF07718 Coatamer_beta_C: Coat 77.2 24 0.00052 33.0 9.8 69 662-732 70-139 (140)
81 COG1470 Predicted membrane pro 75.8 27 0.00059 38.9 11.2 70 662-731 398-468 (513)
82 TIGR02745 ccoG_rdxA_fixG cytoc 73.8 16 0.00035 41.1 9.3 55 662-717 347-401 (434)
83 PF00635 Motile_Sperm: MSP (Ma 73.1 18 0.00039 31.9 7.9 53 662-717 19-71 (109)
84 COG1470 Predicted membrane pro 72.9 45 0.00098 37.3 12.0 56 662-718 285-346 (513)
85 KOG4628 Predicted E3 ubiquitin 65.0 20 0.00043 38.8 7.3 75 385-460 62-150 (348)
86 cd04821 PA_M28_1_2 PA_M28_1_2: 58.1 22 0.00048 34.1 5.6 39 392-430 42-102 (157)
87 smart00635 BID_2 Bacterial Ig- 51.9 38 0.00082 28.3 5.5 40 690-734 4-43 (81)
88 PF07705 CARDB: CARDB; InterP 51.3 1.2E+02 0.0026 25.7 9.0 51 662-716 20-72 (101)
89 PF08139 LPAM_1: Prokaryotic m 47.7 20 0.00043 23.1 2.3 13 5-17 6-18 (25)
90 PF12690 BsuPI: Intracellular 46.5 55 0.0012 27.7 5.6 54 664-718 3-73 (82)
91 PF07172 GRP: Glycine rich pro 44.4 16 0.00036 31.8 2.1 22 7-28 4-25 (95)
92 PLN03080 Probable beta-xylosid 38.8 68 0.0015 39.2 6.9 78 662-740 685-778 (779)
93 COG4808 Uncharacterized protei 36.6 93 0.002 28.8 5.7 35 70-104 91-125 (152)
94 PF04744 Monooxygenase_B: Mono 36.3 1.4E+02 0.0029 32.6 7.8 51 661-715 263-335 (381)
95 PRK10081 entericidin B membran 34.0 43 0.00092 25.2 2.6 11 5-15 1-11 (48)
96 PF07610 DUF1573: Protein of u 33.6 1.6E+02 0.0034 21.6 5.6 44 667-713 2-45 (45)
97 PF08821 CGGC: CGGC domain; I 32.5 2.2E+02 0.0047 25.5 7.4 41 241-284 36-76 (107)
98 PRK15098 beta-D-glucoside gluc 31.6 1.2E+02 0.0025 37.2 7.4 70 645-717 646-729 (765)
99 KOG3920 Uncharacterized conser 31.4 89 0.0019 29.6 4.8 79 385-465 74-169 (193)
100 PRK09810 entericidin A; Provis 29.9 51 0.0011 24.0 2.3 9 5-13 1-9 (41)
101 cd00407 Urease_beta Urease bet 29.7 1.6E+02 0.0035 25.9 5.8 14 663-676 20-33 (101)
102 PRK13202 ureB urease subunit b 29.6 1.2E+02 0.0026 26.8 5.0 14 663-676 21-34 (104)
103 PRK13203 ureB urease subunit b 29.4 1.5E+02 0.0032 26.1 5.5 14 663-676 20-33 (102)
104 PF02845 CUE: CUE domain; Int 28.3 47 0.001 24.0 2.0 24 546-569 5-28 (42)
105 PF10916 DUF2712: Protein of u 27.2 91 0.002 29.2 4.1 43 1-43 1-43 (146)
106 PF08260 Kinin: Insect kinin p 26.7 31 0.00066 15.9 0.5 6 482-487 3-8 (8)
107 PRK15308 putative fimbrial pro 26.5 1.8E+02 0.004 29.8 6.7 50 665-715 35-100 (234)
108 COG5510 Predicted small secret 26.3 63 0.0014 23.7 2.3 20 5-24 1-21 (44)
109 TIGR00192 urease_beta urease, 26.0 1.4E+02 0.0029 26.3 4.7 14 663-676 20-33 (101)
110 PRK15019 CsdA-binding activato 25.7 56 0.0012 31.0 2.6 32 531-563 78-109 (147)
111 TIGR03391 FeS_syn_CsdE cystein 24.6 62 0.0013 30.4 2.6 33 530-563 72-104 (138)
112 PF00699 Urease_beta: Urease b 24.6 4.1E+02 0.0089 23.4 7.3 16 662-677 18-33 (100)
113 PF13956 Ibs_toxin: Toxin Ibs, 23.9 33 0.00072 20.1 0.4 9 5-13 1-9 (19)
114 PF11611 DUF4352: Domain of un 23.6 3.5E+02 0.0077 23.9 7.5 57 662-719 37-105 (123)
115 PF13940 Ldr_toxin: Toxin Ldr, 22.7 60 0.0013 22.3 1.5 13 537-549 14-26 (35)
116 TIGR03079 CH4_NH3mon_ox_B meth 22.7 95 0.0021 33.7 3.8 51 661-715 282-354 (399)
117 COG4531 ZnuA ABC-type Zn2+ tra 22.2 2.6E+02 0.0056 29.3 6.6 27 89-115 65-91 (318)
118 PRK13201 ureB urease subunit b 21.8 1.9E+02 0.004 26.8 4.9 14 663-676 20-33 (136)
119 PRK09296 cysteine desufuration 21.5 76 0.0017 29.7 2.6 32 531-563 68-99 (138)
120 PRK13205 ureB urease subunit b 21.4 1.9E+02 0.004 27.4 4.9 15 662-676 19-33 (162)
121 TIGR01451 B_ant_repeat conserv 21.3 3.8E+02 0.0081 20.4 6.0 36 662-700 13-50 (53)
122 PF04255 DUF433: Protein of un 21.2 69 0.0015 24.8 1.9 39 528-566 10-54 (56)
123 PRK14125 cell division suppres 21.1 1.6E+02 0.0035 26.0 4.5 9 1-9 1-9 (103)
124 COG2166 sufE Cysteine desulfur 20.6 77 0.0017 29.8 2.4 24 539-562 80-103 (144)
125 PF02657 SufE: Fe-S metabolism 20.4 87 0.0019 28.8 2.7 33 531-564 59-91 (125)
126 PF00927 Transglut_C: Transglu 20.4 5.6E+02 0.012 22.3 7.9 54 662-717 16-78 (107)
127 PF12276 DUF3617: Protein of u 20.2 1E+02 0.0022 29.4 3.3 38 6-43 1-38 (162)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.9e-52 Score=444.39 Aligned_cols=295 Identities=57% Similarity=0.891 Sum_probs=251.4
Q ss_pred eccccCCCccccCCccc---ccc-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCcc--CCcceE
Q 004503 112 HQLHTTRSWDFIGLPQT---ARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSG--CNNKLI 185 (748)
Q Consensus 112 ~~~~~~~s~~~~~~~~~---~~w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~--~n~kii 185 (748)
++++++++|+|++++.. .+| .+.+|+||+|||||||||++||+|.+....+.+..|.+.|..+..+.. ||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 46889999999999731 134 699999999999999999999999998888889999999999887754 999999
Q ss_pred eeeecccCCCC------CCCCCCCCCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCH
Q 004503 186 GARYFKLDGNP------DPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSD 259 (748)
Q Consensus 186 g~~~~~~~~~~------~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~ 259 (748)
+.++|. ++.. .+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+++|+++....+..
T Consensus 81 g~~~~~-~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 81 GARYFS-DGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEcc-cchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 999998 4321 233456778999999999999999987776666777777799999999999999993255889
Q ss_pred HHHHHHHHHHHhCCccEEEEccCCCCCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcccCCCCceEEEeccccccc
Q 004503 260 MDILAAFDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQ 339 (748)
Q Consensus 260 ~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~ 339 (748)
+++++||++|+++|++|||||||......+.+.+..+++.+.++|++||+||||+|+...+.++.+||+++|||++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999998545566788888889999999999999999988888888899999999732
Q ss_pred eeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhc
Q 004503 340 FKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGI 419 (748)
Q Consensus 340 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~ 419 (748)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCc
Q 004503 420 GGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPD 499 (748)
Q Consensus 420 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPD 499 (748)
+|||
T Consensus 236 ----------------------------------------------------------------------------~~~d 239 (307)
T cd04852 236 ----------------------------------------------------------------------------LKPD 239 (307)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 3589
Q ss_pred EEcCCCcEEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 500 IAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 500 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
|+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|++||++|++||+
T Consensus 240 i~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 240 IAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999874211 111222378999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=4.5e-50 Score=447.15 Aligned_cols=298 Identities=20% Similarity=0.196 Sum_probs=216.0
Q ss_pred CCccccCCcccccc---CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCcc-CCcce---Eeeeec
Q 004503 118 RSWDFIGLPQTARR---NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSG-CNNKL---IGARYF 190 (748)
Q Consensus 118 ~s~~~~~~~~~~~w---~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~-~n~ki---ig~~~~ 190 (748)
.+|.+..+....+| .+.+|+||+|||||||||++||+|.+.-.. .+....|+ ++.. +++.. +.+++|
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~-n~~el~Gr-----dgiDdD~nG~vdd~~G~nf 367 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV-NVKELHGR-----KGIDDDNNGNVDDEYGANF 367 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc-ccccccCc-----cccccccCCcccccccccc
Confidence 45666554444566 678899999999999999999999854211 01111111 0000 11111 122333
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHH
Q 004503 191 KLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAA 269 (748)
Q Consensus 191 ~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a 269 (748)
. + +..+|.|.+||||||||||||...++ .|. .||||+|+|+++|+++ ..+ +..+++++||+||
T Consensus 368 V-d------~~~~P~D~~GHGTHVAGIIAA~gnN~-------~Gi-~GVAP~AkLi~vKVld-~~G~G~~sdI~~AI~yA 431 (639)
T PTZ00262 368 V-N------NDGGPMDDNYHGTHVSGIISAIGNNN-------IGI-VGVDKRSKLIICKALD-SHKLGRLGDMFKCFDYC 431 (639)
T ss_pred c-C------CCCCCCCCCCcchHHHHHHhccccCC-------Cce-eeeecccccceEEEec-CCCCccHHHHHHHHHHH
Confidence 3 1 12457899999999999999976432 222 8999999999999998 544 8899999999999
Q ss_pred HhCCccEEEEccCCCCCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCc--------------ccC----CCCceEEE
Q 004503 270 IHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGT--------------VSN----HAPWLVTV 331 (748)
Q Consensus 270 ~~~gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p~vitV 331 (748)
++.|++|||||||+.. ....+..++.+|.++|++||+||||+|..... ++. ..|++|+|
T Consensus 432 ~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaV 508 (639)
T PTZ00262 432 ISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITV 508 (639)
T ss_pred HHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEE
Confidence 9999999999999762 23456667779999999999999999864321 111 13556666
Q ss_pred eccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCc
Q 004503 332 AASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWG 411 (748)
Q Consensus 332 gA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~ 411 (748)
||++.+..
T Consensus 509 GAv~~d~~------------------------------------------------------------------------ 516 (639)
T PTZ00262 509 SNLIKDKN------------------------------------------------------------------------ 516 (639)
T ss_pred eeccCCCC------------------------------------------------------------------------
Confidence 65432200
Q ss_pred hhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCC
Q 004503 412 ADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPG 491 (748)
Q Consensus 412 ~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~ 491 (748)
..-..+.||++|..
T Consensus 517 ----------------------------------------------------------------~~~s~s~~Snyg~~-- 530 (639)
T PTZ00262 517 ----------------------------------------------------------------NQYSLSPNSFYSAK-- 530 (639)
T ss_pred ----------------------------------------------------------------CcccccccccCCCC--
Confidence 00023456677633
Q ss_pred CCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCC
Q 004503 492 SKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKP 571 (748)
Q Consensus 492 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~ 571 (748)
++||+|||++|+++++. +.|..++|||||||||||+||||++++|+|++++|+++|++||.+
T Consensus 531 -----~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~ 592 (639)
T PTZ00262 531 -----YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQ 592 (639)
T ss_pred -----cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCcc
Confidence 37999999999999876 679999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCccCCCC-CcCCccccCCCceee
Q 004503 572 MSQRVNNEAEFAYGA-GQVNPQKAVSPGLVY 601 (748)
Q Consensus 572 ~~~~~~~~~~~~~G~-G~vn~~~Al~~glv~ 601 (748)
++.. +..+|| |+||+++|++..+-+
T Consensus 593 l~~~-----~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 593 LPSL-----KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CCCC-----CCccccCcEEcHHHHHHHHHhc
Confidence 7654 223343 899999999976654
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=4.2e-49 Score=413.47 Aligned_cols=270 Identities=24% Similarity=0.267 Sum_probs=204.7
Q ss_pred CCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCch
Q 004503 133 LKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGT 212 (748)
Q Consensus 133 ~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGT 212 (748)
+++|+||+|||||||||.+||++.+-..+..+..+ .+. .. .....|..||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~---------------------~~~-~~------~~~~~d~~gHGT 52 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV---------------------NVL-GD------LDGGSGGGDEGR 52 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce---------------------eec-cc------cCCCCCCCchHH
Confidence 57999999999999999999865422111111111 111 00 134567899999
Q ss_pred hHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCCCCCC-chh
Q 004503 213 HTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGATEDY-ASD 291 (748)
Q Consensus 213 hVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~-~~~ 291 (748)
|||||| .||||+|+|+.+|+.. ..+++++||+||+++|++|||||||.....+ .+.
T Consensus 53 ~vAgii------------------~GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 109 (275)
T cd05562 53 AMLEII------------------HDIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDG 109 (275)
T ss_pred HHHHHH------------------hccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCC
Confidence 999999 4789999999988744 4789999999999999999999999874333 334
Q ss_pred HHHHHHHHhhhc-CcEEEEecCCCCCCCC-cccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeee
Q 004503 292 TISVGAFHALKK-GIVTVASAGNDGPKWG-TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPL 369 (748)
Q Consensus 292 ~i~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~ 369 (748)
.+..++.++.++ |++||+||||+|+... ..+...|++|+|||++.+.....+.
T Consensus 110 ~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------------- 164 (275)
T cd05562 110 PIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------------- 164 (275)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-------------------------
Confidence 677777788887 9999999999998543 3466789999999987552110000
Q ss_pred EeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccc
Q 004503 370 VSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTD 449 (748)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 449 (748)
|.. . +
T Consensus 165 ------------------~~~------------------------------~-~-------------------------- 169 (275)
T cd05562 165 ------------------DPA------------------------------P-G-------------------------- 169 (275)
T ss_pred ------------------ccc------------------------------c-C--------------------------
Confidence 000 0 0
Q ss_pred hHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCC-cEEecccCCcccCCCCCCCcccc
Q 004503 450 GDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGI-DILASYTLMKSLTGLKGDTQYSK 528 (748)
Q Consensus 450 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~ 528 (748)
......+.||++||+. ++.+||||+|||. ++.+.+.. +.
T Consensus 170 -------------------------~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~ 209 (275)
T cd05562 170 -------------------------GTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DG 209 (275)
T ss_pred -------------------------CCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------Cc
Confidence 0001346678899986 6789999999975 44554433 67
Q ss_pred ceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCCCCCCCCCCCccCCCCCcCCccccCC
Q 004503 529 FTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVS 596 (748)
Q Consensus 529 y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 596 (748)
|..++|||||||||||++|||+|++|+|++++||++|++||+++...+. +..||||+||+.+|++
T Consensus 210 ~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---d~~~G~G~vda~~Av~ 274 (275)
T cd05562 210 PPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGY---DNASGSGLVDADRAVA 274 (275)
T ss_pred eeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCC---CCCcCcCcccHHHHhh
Confidence 8999999999999999999999999999999999999999999875543 6799999999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.9e-48 Score=404.12 Aligned_cols=242 Identities=27% Similarity=0.388 Sum_probs=196.9
Q ss_pred c-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCC
Q 004503 131 R-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDG 209 (748)
Q Consensus 131 w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~g 209 (748)
| .+++|+||+|||||||||.+||+|.+.. ... +|. +. ....|..|
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~-------------~~~-------------~~~-~~-------~~~~d~~g 46 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK-------------ERT-------------NWT-NE-------KTLDDGLG 46 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc-------------ccc-------------ccC-CC-------CCCCCCCC
Confidence 6 7899999999999999999999997310 011 111 11 24567889
Q ss_pred CchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHHhCCccEEEEccCCCCCCC
Q 004503 210 HGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVNVISISIGGATEDY 288 (748)
Q Consensus 210 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~ 288 (748)
|||||||||+|+.. .+.||||+|+|+.+|++. +.+ +..++++++|+||+++++||||||||... +
T Consensus 47 HGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~ 112 (255)
T cd07479 47 HGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFT-NNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--F 112 (255)
T ss_pred cHHHHHHHHHccCC-----------CceeECCCCEEEEEEeec-CCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--C
Confidence 99999999999742 138999999999999998 544 67788999999999999999999999863 2
Q ss_pred chhHHHHHHHHhhhcCcEEEEecCCCCCCCCc--ccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCe
Q 004503 289 ASDTISVGAFHALKKGIVTVASAGNDGPKWGT--VSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKF 366 (748)
Q Consensus 289 ~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 366 (748)
...++..++.++.++|++||+||||+|+...+ .+...+++|+|||.+.+
T Consensus 113 ~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 163 (255)
T cd07479 113 MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD----------------------------- 163 (255)
T ss_pred CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-----------------------------
Confidence 34556666778889999999999999986443 34567889999885432
Q ss_pred eeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEc
Q 004503 367 YPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVN 446 (748)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 446 (748)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCC----CCCCCCCcEEcCCCcEEecccCCcccCCCCC
Q 004503 447 VTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPG----SKHLLKPDIAAPGIDILASYTLMKSLTGLKG 522 (748)
Q Consensus 447 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 522 (748)
+.++.|||+|++.. ..+++||||+|||.+|+++...
T Consensus 164 -------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~--------- 203 (255)
T cd07479 164 -------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK--------- 203 (255)
T ss_pred -------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------
Confidence 25788999997521 3577899999999999987654
Q ss_pred CCccccceeeccccchhhHHHHHHHHhHhcCC----CCCHHHHHHHHhccCCCCC
Q 004503 523 DTQYSKFTLMSGTSMACPHIAGVVAYVKSFHP----SWSPAAIKSAIMTTAKPMS 573 (748)
Q Consensus 523 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~sp~~ik~~L~~TA~~~~ 573 (748)
+.|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 204 ----~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 ----GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ----CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 5788999999999999999999999998 7899999999999999875
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-48 Score=412.05 Aligned_cols=287 Identities=28% Similarity=0.283 Sum_probs=189.3
Q ss_pred CCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHH
Q 004503 136 ESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTS 215 (748)
Q Consensus 136 G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVA 215 (748)
|+||+|||||||||++||+|.+.... .|. ..|. +..++....++. ......+.|++|||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~------~~~d-~~~~~~~g~d~~------~~~~~~~~D~~gHGThvA 63 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWK------LKFD-YKAYLLPGMDKW------GGFYVIMYDFFSHGTSCA 63 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccc------cccC-cCCCccCCcCCC------CCccCCCCCccccchhHH
Confidence 89999999999999999999743210 010 0010 001111111111 011134678999999999
Q ss_pred HhhcccccCCccccccc-cccccccccCceEEEEEEeecCCCCCHHHHHH-------HHHHH--HhCCccEEEEccCCCC
Q 004503 216 STLAGNVVANASLYGLA-WGAARGAVPNARVAAYKVCWVSSGCSDMDILA-------AFDAA--IHDGVNVISISIGGAT 285 (748)
Q Consensus 216 giiag~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--~~~gvdVIn~S~G~~~ 285 (748)
|||||......+.+++. ...+.||||+|+|+++|++++...+....+.+ +++|+ .++++||||||||...
T Consensus 64 Giiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~ 143 (311)
T cd07497 64 SVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISN 143 (311)
T ss_pred HHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCC
Confidence 99999864432222211 12348999999999999997222233333333 34443 3689999999999863
Q ss_pred CCC-----chhHHHHHHHH-hhhcCcEEEEecCCCCCCCCc--ccCCCCceEEEeccccccceeeeeeeCCCeEEeeeee
Q 004503 286 EDY-----ASDTISVGAFH-ALKKGIVTVASAGNDGPKWGT--VSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGV 357 (748)
Q Consensus 286 ~~~-----~~~~i~~a~~~-a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~ 357 (748)
..+ ..+..+..... +.++|+++|+||||+|+...+ .+..++++|+|||++..+..+.
T Consensus 144 ~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~--------------- 208 (311)
T cd07497 144 FAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF--------------- 208 (311)
T ss_pred CCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch---------------
Confidence 211 11222322222 238999999999999986544 4557899999999864311000
Q ss_pred ecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCccccccc
Q 004503 358 NTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQI 437 (748)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 437 (748)
+...+..
T Consensus 209 ---------~~~~~~~---------------------------------------------------------------- 215 (311)
T cd07497 209 ---------YLFGYLP---------------------------------------------------------------- 215 (311)
T ss_pred ---------hhhcccc----------------------------------------------------------------
Confidence 0000000
Q ss_pred ccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCccc
Q 004503 438 YMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSL 517 (748)
Q Consensus 438 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 517 (748)
...+.++.||||||+. ++++||||+|||++|+++.+.....
T Consensus 216 -------------------------------------~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~ 256 (311)
T cd07497 216 -------------------------------------GGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSG 256 (311)
T ss_pred -------------------------------------CCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCC
Confidence 0113679999999997 7999999999999999987653210
Q ss_pred CCCCCCCccccceeeccccchhhHHHHHHHHhHhcCC------CCCHHHHHHHHhccC
Q 004503 518 TGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHP------SWSPAAIKSAIMTTA 569 (748)
Q Consensus 518 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~sp~~ik~~L~~TA 569 (748)
.. ......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 257 ~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 257 GA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 00 11125799999999999999999999999876 689999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.9e-47 Score=413.50 Aligned_cols=308 Identities=30% Similarity=0.363 Sum_probs=227.7
Q ss_pred cc-CCC-CCCCcEEEEEecCCCCCCcCCCCCCCCCCCC-----CcCccccccCCCccCCcceEeeeecccCCCCCCCCCC
Q 004503 130 RR-NLK-IESDIVVGLMDTGITPESESFKDSGFGPPPA-----KWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDIL 202 (748)
Q Consensus 130 ~w-~~~-~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~-----~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~ 202 (748)
+| .+. +|+||+|||||||||++||+|.+....+... .+...+..+.... ++.|++..++|. ++.. +..
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~~~ 76 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKY-YNEKVPFAYNYA-DNND---DIL 76 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcc-cccCCCeeEcCC-CCCC---ccC
Confidence 67 444 8999999999999999999998654432111 1122222222222 678888888887 3321 111
Q ss_pred CCCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeec--CCCCCHHHHHHHHHHHHhCCccEEEEc
Q 004503 203 SPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWV--SSGCSDMDILAAFDAAIHDGVNVISIS 280 (748)
Q Consensus 203 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~a~~~gvdVIn~S 280 (748)
...|..+|||||||||+|...+... ...+.||||+|+|+.+|+++. ...+....+++|++++++.|++|||||
T Consensus 77 ~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S 151 (346)
T cd07475 77 DEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMS 151 (346)
T ss_pred CCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 2457899999999999998754211 223499999999999999972 234778889999999999999999999
Q ss_pred cCCCCC-CCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcc----------------cCCCCceEEEeccccccceeee
Q 004503 281 IGGATE-DYASDTISVGAFHALKKGIVTVASAGNDGPKWGTV----------------SNHAPWLVTVAASGIDRQFKSK 343 (748)
Q Consensus 281 ~G~~~~-~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVgA~~~~~~~~~~ 343 (748)
||.... ......+..++.++.++|++||+||||+|...... +...+++|+||++....
T Consensus 152 ~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~----- 226 (346)
T cd07475 152 LGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV----- 226 (346)
T ss_pred CCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc-----
Confidence 999832 24456677778889999999999999998654321 12234555555533110
Q ss_pred eeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceE
Q 004503 344 VKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVG 423 (748)
Q Consensus 344 ~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g 423 (748)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcC
Q 004503 424 IIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAP 503 (748)
Q Consensus 424 ~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~AP 503 (748)
.. .....++.||+|||+. ..++||||+||
T Consensus 227 ---~~----------------------------------------------~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 227 ---PN----------------------------------------------PNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred ---CC----------------------------------------------CCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 00 0123678999999996 78899999999
Q ss_pred CCcEEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhc----CCCCCHHH----HHHHHhccCCCCCCC
Q 004503 504 GIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSF----HPSWSPAA----IKSAIMTTAKPMSQR 575 (748)
Q Consensus 504 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~----ik~~L~~TA~~~~~~ 575 (748)
|.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+....
T Consensus 256 G~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~ 322 (346)
T cd07475 256 GGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS 322 (346)
T ss_pred CCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 9999998765 67899999999999999999999997 79999876 788999999953321
Q ss_pred ---CCCCCccCCCCCcCCccccCC
Q 004503 576 ---VNNEAEFAYGAGQVNPQKAVS 596 (748)
Q Consensus 576 ---~~~~~~~~~G~G~vn~~~Al~ 596 (748)
+....+..+|+|+||+.+|++
T Consensus 323 ~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCCCccCCccccCcchhcHHHhhC
Confidence 222256788999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.8e-46 Score=417.43 Aligned_cols=399 Identities=22% Similarity=0.262 Sum_probs=236.4
Q ss_pred CCCCCcEEEEEecCCCCCCcCCCCC-CCCCCCCCcCccccccCCCccCCcceEeeeecccC---C---CCCCCCCCCCCC
Q 004503 134 KIESDIVVGLMDTGITPESESFKDS-GFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLD---G---NPDPWDILSPID 206 (748)
Q Consensus 134 ~~G~gV~VaVIDtGId~~Hp~f~d~-~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~---~---~~~~~~~~~~~D 206 (748)
.+|+||+|||||||||+.||+|.+. +..++...|+.....+.. .....+...|..+ . ..++.+.....|
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D 76 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP----PGGYYGGGEYTEEIINAALASDNPYDIVPSRD 76 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC----CccccCceEEeHHHHHHHHhcCCccccCcCCC
Confidence 4899999999999999999999853 445666777655443321 1112222222200 0 012333455678
Q ss_pred CCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCC-----------CCHHHHHHHHHHHHhC---
Q 004503 207 VDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-----------CSDMDILAAFDAAIHD--- 272 (748)
Q Consensus 207 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----------~~~~~i~~ai~~a~~~--- 272 (748)
..||||||||||||+..++. .+.||||+|+|+++|++. ..+ +..+++++||+|+++.
T Consensus 77 ~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~-~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~ 147 (455)
T cd07478 77 ENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQ-AKKYLREFYEDVPFYQETDIMLAIKYLYDKALE 147 (455)
T ss_pred CCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeec-CCCcccccccccccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999875422 239999999999999998 443 5788999999999874
Q ss_pred --CccEEEEccCCC-CCCCchhHHHHHHHHhhhc-CcEEEEecCCCCCCCCcccCC-C------CceEEEecccccc---
Q 004503 273 --GVNVISISIGGA-TEDYASDTISVGAFHALKK-GIVTVASAGNDGPKWGTVSNH-A------PWLVTVAASGIDR--- 338 (748)
Q Consensus 273 --gvdVIn~S~G~~-~~~~~~~~i~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-~------p~vitVgA~~~~~--- 338 (748)
.+.|||||||.. ++....+.++.++..+.++ |++||+||||+|....+.... . .--+.|+.....-
T Consensus 148 ~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~e 227 (455)
T cd07478 148 LNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLE 227 (455)
T ss_pred hCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEEE
Confidence 478999999987 4445566777777777765 999999999999754333221 0 0112232211110
Q ss_pred -------ceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCC-CCCCCCCccceEEEEecCCC
Q 004503 339 -------QFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFD-DSLDPKKVKGKLVYCKLGTW 410 (748)
Q Consensus 339 -------~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~-~~~~~~~~~gkivl~~~~~~ 410 (748)
.+.-.+..+.|+......... .....+.+.+... ..|.. ...++..-...|.+. .
T Consensus 228 iW~~~~d~~~v~i~sP~Ge~~~~i~~~~--~~~~~~~~~~~~t-----------~i~v~y~~~~~~~g~~~i~i~-~--- 290 (455)
T cd07478 228 IWGDFPDRFSVSIISPSGESSGRINPGI--GGSESYKFVFEGT-----------TVYVYYYLPEPYTGDQLIFIR-F--- 290 (455)
T ss_pred EecCCCCEEEEEEECCCCCccCccCcCC--CcceeEEEEECCe-----------EEEEEEcCCCCCCCCeEEEEE-c---
Confidence 000111111111110000000 0000001111000 00100 000111111122221 0
Q ss_pred chhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEece----eee---ecCCeeccc
Q 004503 411 GADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQ----EVK---VRAPFIASF 483 (748)
Q Consensus 411 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~----~~~---~~~~~~a~f 483 (748)
.-...|-.-+.++.....+-....++|.-.+..++. .+++.....++++.... ++. ...+.++.|
T Consensus 291 ----~~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~ 362 (455)
T cd07478 291 ----KNIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIF 362 (455)
T ss_pred ----cCCCccceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCc
Confidence 111112222222222211112233344333332222 22333444444443322 111 223468999
Q ss_pred CCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcC------CCCC
Q 004503 484 SSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFH------PSWS 557 (748)
Q Consensus 484 Ss~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~~s 557 (748)
|||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+|++ |.|+
T Consensus 363 Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~ 427 (455)
T cd07478 363 SGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLY 427 (455)
T ss_pred cCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCC
Confidence 9999997 899999999999999999985 689999999999999999999999975 5679
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCccCCCCC
Q 004503 558 PAAIKSAIMTTAKPMSQRVNNEAEFAYGAG 587 (748)
Q Consensus 558 p~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 587 (748)
+++||++|++||++......| +.+||||
T Consensus 428 ~~~ik~~L~~tA~~~~~~~~p--n~~~GyG 455 (455)
T cd07478 428 GEKIKTYLIRGARRRPGDEYP--NPEWGYG 455 (455)
T ss_pred HHHHHHHHHHhCccCCCCCCC--CCCCCCC
Confidence 999999999999998754443 8899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-46 Score=399.72 Aligned_cols=285 Identities=33% Similarity=0.471 Sum_probs=223.4
Q ss_pred ccc-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCC---CCCCCCCCC
Q 004503 129 ARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGN---PDPWDILSP 204 (748)
Q Consensus 129 ~~w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~---~~~~~~~~~ 204 (748)
.+| .+++|+||+|||||+|||++||+|.+.... +.++.+.++|..+.+ ....+...+
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 64 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-------------------GCKVAGGYDFVGDDYDGTNPPVPDDDP 64 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-------------------CceeccccccCCcccccccCCCCCCCC
Confidence 577 899999999999999999999999854211 112222333331221 111223456
Q ss_pred CCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCC
Q 004503 205 IDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGA 284 (748)
Q Consensus 205 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~ 284 (748)
.|..||||||||||+|...+ .|+ .||||+|+|+.+|++++........++++|++|++++++|||+|||..
T Consensus 65 ~d~~gHGT~vAgiia~~~~~----~~~-----~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~ 135 (312)
T cd07489 65 MDCQGHGTHVAGIIAANPNA----YGF-----TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGP 135 (312)
T ss_pred CCCCCcHHHHHHHHhcCCCC----Cce-----EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcC
Confidence 77899999999999998643 233 899999999999999833447788899999999999999999999987
Q ss_pred CCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCC---cccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCC
Q 004503 285 TEDYASDTISVGAFHALKKGIVTVASAGNDGPKWG---TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFD 361 (748)
Q Consensus 285 ~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 361 (748)
. .+..+.+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 136 ~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------------- 188 (312)
T cd07489 136 S-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------------- 188 (312)
T ss_pred C-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------------
Confidence 4 233466777778888999999999999987532 2344567777777532
Q ss_pred CCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCccccccccccc
Q 004503 362 PKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAP 441 (748)
Q Consensus 362 ~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p 441 (748)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCC
Q 004503 442 GTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLK 521 (748)
Q Consensus 442 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 521 (748)
+.||++||+. +...||||+|||.+++++++...
T Consensus 189 ---------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~------ 221 (312)
T cd07489 189 ---------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG------ 221 (312)
T ss_pred ---------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC------
Confidence 4678999986 67899999999999999887632
Q ss_pred CCCccccceeeccccchhhHHHHHHHHhHhcC-CCCCHHHHHHHHhccCCCCCCCCCC------CCccCCCCCcCCcccc
Q 004503 522 GDTQYSKFTLMSGTSMACPHIAGVVAYVKSFH-PSWSPAAIKSAIMTTAKPMSQRVNN------EAEFAYGAGQVNPQKA 594 (748)
Q Consensus 522 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~sp~~ik~~L~~TA~~~~~~~~~------~~~~~~G~G~vn~~~A 594 (748)
+.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+.. .....+|||+||+.+|
T Consensus 222 -----~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a 296 (312)
T cd07489 222 -----GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKA 296 (312)
T ss_pred -----CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHH
Confidence 468999999999999999999999999 9999999999999999987654321 1347899999999999
Q ss_pred CCCcee
Q 004503 595 VSPGLV 600 (748)
Q Consensus 595 l~~glv 600 (748)
++..-.
T Consensus 297 ~~~~~~ 302 (312)
T cd07489 297 LYATTT 302 (312)
T ss_pred hcCCcc
Confidence 996443
No 9
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=6.8e-46 Score=394.04 Aligned_cols=267 Identities=26% Similarity=0.389 Sum_probs=191.5
Q ss_pred CCcEEEEEecCCCCCCcCCCCCCCCC---CC-----CCcCccc--cccCCCcc--CCcceEeeeecccCC-CCCCCCCCC
Q 004503 137 SDIVVGLMDTGITPESESFKDSGFGP---PP-----AKWKGKC--DHFANFSG--CNNKLIGARYFKLDG-NPDPWDILS 203 (748)
Q Consensus 137 ~gV~VaVIDtGId~~Hp~f~d~~~~~---~~-----~~~~g~~--~~g~~f~~--~n~kiig~~~~~~~~-~~~~~~~~~ 203 (748)
|+|+|||||||||++||+|++..... .+ ....|.+ ..|.+|.. +.+++++...+.... .....+...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 68999999999999999998642110 00 0111111 12334432 222333322222110 011223345
Q ss_pred CCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCC
Q 004503 204 PIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGG 283 (748)
Q Consensus 204 ~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~ 283 (748)
+.+..||||||||||+|...++ .| +.||||+|+|+.+|++. .......++++||+||++.|++|||||||.
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~-~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~ 151 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVP-NGDERDKDIANAIRYAVDNGAKVINMSFGK 151 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEec-CCCcCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 6678999999999999986442 22 28999999999999987 555678899999999999999999999997
Q ss_pred CCCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcc---c--------CCCCceEEEeccccccceeeeeeeCCCeEE
Q 004503 284 ATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTV---S--------NHAPWLVTVAASGIDRQFKSKVKTGNGRSV 352 (748)
Q Consensus 284 ~~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (748)
.... ....+..++..+.++|+++|+||||+|...... + ...+.+|+|||++...
T Consensus 152 ~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-------------- 216 (291)
T cd07483 152 SFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-------------- 216 (291)
T ss_pred CCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC--------------
Confidence 6322 234566677788999999999999998643211 1 1234555665543220
Q ss_pred eeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcc
Q 004503 353 SGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFL 432 (748)
Q Consensus 353 ~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 432 (748)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEeccc
Q 004503 433 DVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYT 512 (748)
Q Consensus 433 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~ 512 (748)
....++.||++|+. +|||+|||.+|+++.+
T Consensus 217 -------------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~ 246 (291)
T cd07483 217 -------------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYSTTP 246 (291)
T ss_pred -------------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEeccC
Confidence 00146889999985 3899999999999876
Q ss_pred CCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 513 LMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 513 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 247 ~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 247 D-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred c-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 5 67999999999999999999999999999999999999999984
No 10
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.2e-45 Score=386.42 Aligned_cols=247 Identities=25% Similarity=0.332 Sum_probs=202.6
Q ss_pred cc-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCC
Q 004503 130 RR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVD 208 (748)
Q Consensus 130 ~w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~ 208 (748)
+| .+++|+||+|||||+|||++||+|.+..+.+.. .+. . ......|..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~------------------------~~~-~------~~~~~~~~~ 50 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF------------------------TYA-A------AACQDGGAS 50 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc------------------------Ccc-c------cCCCCCCCC
Confidence 68 899999999999999999999999854221100 000 0 013445788
Q ss_pred CCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCC--CCHHHHHHHHHHHHhCCccEEEEccCCCC-
Q 004503 209 GHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG--CSDMDILAAFDAAIHDGVNVISISIGGAT- 285 (748)
Q Consensus 209 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~S~G~~~- 285 (748)
+|||||||||+|+... .+.||||+|+|+.+|++. ..+ ++..++++||+||+++|+||||||||...
T Consensus 51 gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~-~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 119 (267)
T cd07476 51 AHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFA-EDRRGCSQLDLARAINLALEQGAHIINISGGRLTQ 119 (267)
T ss_pred CcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEe-CCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCC
Confidence 9999999999987521 138999999999999997 433 45789999999999999999999999763
Q ss_pred CCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCC
Q 004503 286 EDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEK 365 (748)
Q Consensus 286 ~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 365 (748)
.......+..++.+|.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 120 ~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 171 (267)
T cd07476 120 TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------------------- 171 (267)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------------------
Confidence 2334566778888899999999999999998877778888999999986532
Q ss_pred eeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEE
Q 004503 366 FYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMV 445 (748)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 445 (748)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCc
Q 004503 446 NVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQ 525 (748)
Q Consensus 446 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 525 (748)
+.++.||+||+.. .||||+|||.+|+++++.
T Consensus 172 --------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~------------ 202 (267)
T cd07476 172 --------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG------------ 202 (267)
T ss_pred --------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC------------
Confidence 1356799999863 379999999999998875
Q ss_pred cccceeeccccchhhHHHHHHHHhHhcCCC----CCHHHHHHHHhccCCCCCCCC
Q 004503 526 YSKFTLMSGTSMACPHIAGVVAYVKSFHPS----WSPAAIKSAIMTTAKPMSQRV 576 (748)
Q Consensus 526 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~sp~~ik~~L~~TA~~~~~~~ 576 (748)
+.|..++|||||||||||++|||+|++|. ++|++||++|++||++++..+
T Consensus 203 -~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 203 -GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred -CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 67999999999999999999999999887 899999999999999987654
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.7e-46 Score=382.39 Aligned_cols=234 Identities=27% Similarity=0.426 Sum_probs=193.2
Q ss_pred cEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHhh
Q 004503 139 IVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTL 218 (748)
Q Consensus 139 V~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgii 218 (748)
|+|||||||||++||+|.+... ..+++. . ....|..+|||||||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-------------------------~~~~~~-~--------~~~~~~~~HGT~vAgii 46 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-------------------------ARLFFA-G--------PGAPAPSAHGTAVASLL 46 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-------------------------ccccCC-C--------CCCCCCCCCHHHHHHHH
Confidence 7899999999999999964311 111111 0 13557899999999999
Q ss_pred cccccCCccccccccccccccccCceEEEEEEeecCC----CCCHHHHHHHHHHHHhCCccEEEEccCCCCCCCchhHHH
Q 004503 219 AGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSS----GCSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTIS 294 (748)
Q Consensus 219 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~----g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~~~~i~ 294 (748)
+|+..+ . .||||+|+|+.+|++. .. .++..++++||+||++.|++|||||||... ...++
T Consensus 47 a~~~~~----------~-~Gvap~a~i~~~~v~~-~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~ 110 (239)
T cd05561 47 AGAGAQ----------R-PGLLPGADLYGADVFG-RAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLA 110 (239)
T ss_pred hCCCCC----------C-cccCCCCEEEEEEEec-CCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHH
Confidence 997532 1 6999999999999998 43 267889999999999999999999999753 24566
Q ss_pred HHHHHhhhcCcEEEEecCCCCCCC-CcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEecc
Q 004503 295 VGAFHALKKGIVTVASAGNDGPKW-GTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGA 373 (748)
Q Consensus 295 ~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~ 373 (748)
.++.++.++|++||+||||+|+.. ..++...|++|+|++++.+
T Consensus 111 ~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------ 154 (239)
T cd05561 111 AAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------ 154 (239)
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC------------------------------------
Confidence 667789999999999999999753 3566677889999885433
Q ss_pred ccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHH
Q 004503 374 DVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNI 453 (748)
Q Consensus 374 ~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l 453 (748)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeec
Q 004503 454 TDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMS 533 (748)
Q Consensus 454 ~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 533 (748)
+.++.||++|+. +||.|||.+|+++.+. +.|..++
T Consensus 155 ------------------------~~~~~~s~~g~~--------~di~ApG~~i~~~~~~-------------~~~~~~s 189 (239)
T cd05561 155 ------------------------GRLYREANRGAH--------VDFAAPGVDVWVAAPG-------------GGYRYVS 189 (239)
T ss_pred ------------------------CCccccCCCCCc--------ceEEccccceecccCC-------------CCEEEeC
Confidence 246789999986 5999999999997754 6799999
Q ss_pred cccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCCCCCCCCCCCccCCCCC
Q 004503 534 GTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAG 587 (748)
Q Consensus 534 GTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 587 (748)
|||||||||||++|||+|++| +++++||++|++||++++..+. +..||||
T Consensus 190 GTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~---d~~~G~G 239 (239)
T cd05561 190 GTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGR---DPVFGYG 239 (239)
T ss_pred CHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCc---CCCcCCC
Confidence 999999999999999999999 9999999999999999887665 7789998
No 12
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.9e-45 Score=388.55 Aligned_cols=283 Identities=37% Similarity=0.530 Sum_probs=216.8
Q ss_pred CCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCC--------CCCCCCCC
Q 004503 136 ESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPW--------DILSPIDV 207 (748)
Q Consensus 136 G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~--------~~~~~~D~ 207 (748)
|+||+|||||+||+++||+|.+..+ .+.++...++|..+...... ......|.
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDA 61 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-------------------CCCceeeeeECccCCCCcccccccccccccCCCCCC
Confidence 8999999999999999999974321 23445555555422211000 11224568
Q ss_pred CCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCCCCC
Q 004503 208 DGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGATED 287 (748)
Q Consensus 208 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~ 287 (748)
.+|||||||+|+|...+. ..+.||||+|+|+.+|+++....+...++++||+|+++++++|||||||.....
T Consensus 62 ~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~ 133 (295)
T cd07474 62 TGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG 133 (295)
T ss_pred CCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC
Confidence 999999999999986442 123899999999999999723347889999999999999999999999987322
Q ss_pred CchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcc--cCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCC
Q 004503 288 YASDTISVGAFHALKKGIVTVASAGNDGPKWGTV--SNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEK 365 (748)
Q Consensus 288 ~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 365 (748)
..+.+..++..+.++|+++|+||||+|...... +...+++|+|||+.....
T Consensus 134 -~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------- 186 (295)
T cd07474 134 -PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------- 186 (295)
T ss_pred -CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------
Confidence 345677777889999999999999998765544 456789999998652100
Q ss_pred eeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEE
Q 004503 366 FYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMV 445 (748)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 445 (748)
.
T Consensus 187 -----------------------~-------------------------------------------------------- 187 (295)
T cd07474 187 -----------------------A-------------------------------------------------------- 187 (295)
T ss_pred -----------------------C--------------------------------------------------------
Confidence 0
Q ss_pred cccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCC-CCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCC
Q 004503 446 NVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSS-RGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDT 524 (748)
Q Consensus 446 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs-~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 524 (748)
.......|++ +|+.. ...+||||+|||.+|++++...
T Consensus 188 ------------------------------~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~---------- 225 (295)
T cd07474 188 ------------------------------EADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS---------- 225 (295)
T ss_pred ------------------------------CCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC----------
Confidence 0012334444 44543 7789999999999999988753
Q ss_pred ccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCCCCCCCCCC-CccCCCCCcCCcccc
Q 004503 525 QYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNE-AEFAYGAGQVNPQKA 594 (748)
Q Consensus 525 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~-~~~~~G~G~vn~~~A 594 (748)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+... .+..+|+|+||+.+|
T Consensus 226 -~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 -GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 157899999999999999999999999999999999999999999987655421 247899999999987
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-44 Score=378.35 Aligned_cols=242 Identities=33% Similarity=0.402 Sum_probs=195.8
Q ss_pred CcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCC-CCCCCCCchhHHH
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILS-PIDVDGHGTHTSS 216 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~-~~D~~gHGThVAg 216 (748)
||+||||||||+++||+|...... ++.++.+.++|..+. .. ..|.+||||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~------------------~~~~i~~~~~~~~~~-------~~~~~~~~~HGT~vag 55 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF------------------KNLRILGEYDFVDNS-------NNTNYTDDDHGTAVLS 55 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc------------------cCCceeeeecCccCC-------CCCCCCCCCchhhhhe
Confidence 799999999999999999522110 345677777776221 22 3678999999999
Q ss_pred hhcccccCCccccccccccccccccCceEEEEEEeecCCC---CCHHHHHHHHHHHHhCCccEEEEccCCCCCCCc----
Q 004503 217 TLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG---CSDMDILAAFDAAIHDGVNVISISIGGATEDYA---- 289 (748)
Q Consensus 217 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~---- 289 (748)
||+|+.. +.+.||||+|+|+.+|+.. ... .....++.|++||.+.|++|||||||.......
T Consensus 56 iia~~~~----------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~ 124 (261)
T cd07493 56 TMAGYTP----------GVMVGTAPNASYYLARTED-VASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSY 124 (261)
T ss_pred eeeeCCC----------CCEEEeCCCCEEEEEEecc-cCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc
Confidence 9999752 2248999999999999876 322 345678999999999999999999998732211
Q ss_pred --------hhHHHHHHHHhhhcCcEEEEecCCCCCC---CCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeee
Q 004503 290 --------SDTISVGAFHALKKGIVTVASAGNDGPK---WGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVN 358 (748)
Q Consensus 290 --------~~~i~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~ 358 (748)
...+..++..+.++|+++|+||||+|.. ....+...|++|+|||.+.+
T Consensus 125 ~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------- 183 (261)
T cd07493 125 TYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN--------------------- 183 (261)
T ss_pred ccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC---------------------
Confidence 2356677778899999999999999987 34556678999999985432
Q ss_pred cCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccc
Q 004503 359 TFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIY 438 (748)
Q Consensus 359 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 438 (748)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccC
Q 004503 439 MAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLT 518 (748)
Q Consensus 439 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 518 (748)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 ---------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~----- 217 (261)
T cd07493 184 ---------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD----- 217 (261)
T ss_pred ---------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-----
Confidence 2468899999986 789999999999999985443
Q ss_pred CCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 519 GLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 519 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 --------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 --------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred --------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=4.5e-44 Score=375.69 Aligned_cols=247 Identities=34% Similarity=0.447 Sum_probs=194.4
Q ss_pred CCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHH
Q 004503 136 ESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTS 215 (748)
Q Consensus 136 G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVA 215 (748)
|+||+||||||||+++||+|.+.-.+ .+.+......++ +. . ......+.|..+||||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~----~~~~~~~~~~~~------------~d--~---~~~~~~~~d~~~HGT~va 59 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG----WGGGSADHDYNW------------FD--P---VGNTPLPYDDNGHGTHTM 59 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc----cCCCCccccccc------------cc--C---CCCCCCCCCCCCchhhhh
Confidence 89999999999999999999854100 000111101000 00 0 011245678899999999
Q ss_pred HhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHh------------CCccEEEEccCC
Q 004503 216 STLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIH------------DGVNVISISIGG 283 (748)
Q Consensus 216 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------------~gvdVIn~S~G~ 283 (748)
|||+|.... +...||||+|+|+.+|+++ ..++...+++++++++++ .|++|||||||.
T Consensus 60 gii~g~~~~---------~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~ 129 (264)
T cd07481 60 GTMVGNDGD---------GQQIGVAPGARWIACRALD-RNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGG 129 (264)
T ss_pred hheeecCCC---------CCceEECCCCeEEEEEeec-CCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCc
Confidence 999987532 1128999999999999998 666888999999999975 789999999998
Q ss_pred CCCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCc---ccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecC
Q 004503 284 ATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGT---VSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTF 360 (748)
Q Consensus 284 ~~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~ 360 (748)
... ....+..++..+.++|++||+||||+|..... .+...|++|+|||++.+
T Consensus 130 ~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------- 184 (264)
T cd07481 130 PSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------- 184 (264)
T ss_pred CCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------------------
Confidence 742 23444555567788999999999999875443 45667899999986533
Q ss_pred CCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccc
Q 004503 361 DPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMA 440 (748)
Q Consensus 361 ~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 440 (748)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCC
Q 004503 441 PGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGL 520 (748)
Q Consensus 441 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 520 (748)
+.++.||++||.. .+++||||+|||.+|+++++.
T Consensus 185 -------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------- 218 (264)
T cd07481 185 -------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------- 218 (264)
T ss_pred -------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------
Confidence 2568899999986 688999999999999998876
Q ss_pred CCCCccccceeeccccchhhHHHHHHHHhHhcCCC--CCHHHHHHHHhccCC
Q 004503 521 KGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPS--WSPAAIKSAIMTTAK 570 (748)
Q Consensus 521 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~sp~~ik~~L~~TA~ 570 (748)
+.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 ------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 ------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999 999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=376.60 Aligned_cols=328 Identities=22% Similarity=0.329 Sum_probs=258.0
Q ss_pred ccCCcEEEEEeCCCCCCchhhhHHHHHHHHHHhcCCC-----CCCcc------------cEEEEec---ceeeEEEEEeC
Q 004503 31 ENQKNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSY-----HDAKE------------SIVYSYT---ESFNAFAAKLS 90 (748)
Q Consensus 31 ~~~~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~------------~v~~~y~---~~~~g~s~~l~ 90 (748)
...++.|||.+++ ....+..+.|.+++++..+.+. +..-. .+.+.|. .+|+|+.-.++
T Consensus 77 ~~~~~~YiV~f~~--~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 77 EALPSRYIVVFKP--DASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccccceEEEeCC--CccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 3457899999995 4445667888888887764410 00000 0233333 37888888999
Q ss_pred HHHHHHhhcCCCeEEEEcCceecc--------ccCCCccccCCccc-----ccc-----CCCCCCCcEEEEEecCCCCCC
Q 004503 91 NDEAQKLQRMDRVLSVFPNRYHQL--------HTTRSWDFIGLPQT-----ARR-----NLKIESDIVVGLMDTGITPES 152 (748)
Q Consensus 91 ~~~~~~L~~~p~V~~V~~~~~~~~--------~~~~s~~~~~~~~~-----~~w-----~~~~G~gV~VaVIDtGId~~H 152 (748)
.+-+..++++|-++.++++..++. ++..+|.+..+... ..| +...|+||...|+||||+.+|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 999999999999999999887654 44556777666432 234 566999999999999999999
Q ss_pred cCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHhhcccccCCccccccc
Q 004503 153 ESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLA 232 (748)
Q Consensus 153 p~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~ 232 (748)
|+|.++ ..+|..++ .+ ....|++||||||||+|++..
T Consensus 235 ~dFegR------------a~wGa~i~--------------~~-------~~~~D~nGHGTH~AG~I~sKt---------- 271 (501)
T KOG1153|consen 235 PDFEGR------------AIWGATIP--------------PK-------DGDEDCNGHGTHVAGLIGSKT---------- 271 (501)
T ss_pred cccccc------------eecccccC--------------CC-------CcccccCCCcceeeeeeeccc----------
Confidence 999854 22343332 01 345689999999999999986
Q ss_pred cccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhC---------CccEEEEccCCCCCCCchhHHHHHHHHhhhc
Q 004503 233 WGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHD---------GVNVISISIGGATEDYASDTISVGAFHALKK 303 (748)
Q Consensus 233 ~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---------gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~ 303 (748)
.|||.+++|+++||++++..++.+++++++|++++. +..|.|||+|+..+. ++..|+.+|.+.
T Consensus 272 ----~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S~----aLn~AV~~A~~~ 343 (501)
T KOG1153|consen 272 ----FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRSA----ALNMAVNAASER 343 (501)
T ss_pred ----cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcccH----HHHHHHHHHhhc
Confidence 799999999999999944449999999999999986 578999999997544 556666799999
Q ss_pred CcEEEEecCCCCCCCC-cccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCc
Q 004503 304 GIVTVASAGNDGPKWG-TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESR 382 (748)
Q Consensus 304 Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 382 (748)
||++++||||+..+.+ +.+..+..+|||||++..
T Consensus 344 Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~--------------------------------------------- 378 (501)
T KOG1153|consen 344 GIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN--------------------------------------------- 378 (501)
T ss_pred CeEEEEcCCCcchhhhccCcccccccEEecccccc---------------------------------------------
Confidence 9999999999987654 566678999999998654
Q ss_pred cccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHHHHHhcCCC
Q 004503 383 DSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRS 462 (748)
Q Consensus 383 ~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 462 (748)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeeccccchhhHH
Q 004503 463 PSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHI 542 (748)
Q Consensus 463 ~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 542 (748)
+.+|.|||||++ .||.|||++|+|+|.+.. ..-.++||||||+|||
T Consensus 379 ---------------D~iA~FSN~G~C--------VdiFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhv 424 (501)
T KOG1153|consen 379 ---------------DTIAFFSNWGKC--------VDIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHV 424 (501)
T ss_pred ---------------cchhhhcCccce--------eeeecCchhhhhhhhcCc-----------cchheeecccccCcch
Confidence 368999999999 499999999999998753 5678999999999999
Q ss_pred HHHHHHhHhcCCC---------CCHHHHHHHHhccCC
Q 004503 543 AGVVAYVKSFHPS---------WSPAAIKSAIMTTAK 570 (748)
Q Consensus 543 AG~aALl~~~~P~---------~sp~~ik~~L~~TA~ 570 (748)
||++|.+++++|. .||.++|..++.-..
T Consensus 425 aG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 425 AGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999883 388888887776554
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=4.1e-43 Score=380.31 Aligned_cols=221 Identities=29% Similarity=0.355 Sum_probs=166.1
Q ss_pred CCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCC--CCHHHHHHHHHHHHhCCccEEEEccC
Q 004503 205 IDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG--CSDMDILAAFDAAIHDGVNVISISIG 282 (748)
Q Consensus 205 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~S~G 282 (748)
.|+++|||||||||||+..++ ..+.||||+|+|+++|+++...+ +...++++||++|++.|+||||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 478899999999999985332 22389999999999999873223 33467999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHH-hhhcCcEEEEecCCCCCCCCcccC---CCCceEEEeccccccceeeeeeeCCCeEEeeeeee
Q 004503 283 GATEDYASDTISVGAFH-ALKKGIVTVASAGNDGPKWGTVSN---HAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVN 358 (748)
Q Consensus 283 ~~~~~~~~~~i~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~ 358 (748)
..........+..++.+ +.++|+++|+||||+|+...++.. .++++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 87322122233334433 346899999999999987766543 46899999996433100000
Q ss_pred cCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccc
Q 004503 359 TFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIY 438 (748)
Q Consensus 359 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 438 (748)
|.+. .
T Consensus 319 --------y~~~-----------------------------~-------------------------------------- 323 (412)
T cd04857 319 --------YSLR-----------------------------E-------------------------------------- 323 (412)
T ss_pred --------cccc-----------------------------c--------------------------------------
Confidence 0000 0
Q ss_pred cccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccC
Q 004503 439 MAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLT 518 (748)
Q Consensus 439 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 518 (748)
...+.++.||||||+. ++.+||||+|||..|.+.-...
T Consensus 324 ------------------------------------~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~---- 361 (412)
T cd04857 324 ------------------------------------KLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT---- 361 (412)
T ss_pred ------------------------------------ccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC----
Confidence 0013578999999997 8999999999999998752211
Q ss_pred CCCCCCccccceeeccccchhhHHHHHHHHhHh----cCCCCCHHHHHHHHhccCCCC
Q 004503 519 GLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKS----FHPSWSPAAIKSAIMTTAKPM 572 (748)
Q Consensus 519 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~ik~~L~~TA~~~ 572 (748)
...|..++|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15689999999999999999999975 579999999999999999864
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=5.6e-43 Score=369.23 Aligned_cols=262 Identities=26% Similarity=0.297 Sum_probs=199.5
Q ss_pred cc-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCC
Q 004503 130 RR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVD 208 (748)
Q Consensus 130 ~w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~ 208 (748)
+| .+++|+||+|+|||||||++||+|.+...... + ..+..+..+. +. . ........|..
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~-~~~~~~~~~~-----------~~-~----~~~~~~~~~~~ 61 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---Y-DPAVNGYNFV-----------PN-V----GDIDNDVSVGG 61 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---c-ccccCCcccc-----------cc-c----CCcCCCCCCCC
Confidence 68 89999999999999999999999986511100 0 0000000000 00 0 01123456789
Q ss_pred CCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCCCCCC
Q 004503 209 GHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGATEDY 288 (748)
Q Consensus 209 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~ 288 (748)
||||||||||+|+..+....-|++ .+.|+||+|+|+.+|++.....+...++++||+||++.|++|||||||......
T Consensus 62 gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~ 139 (273)
T cd07485 62 GHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGI 139 (273)
T ss_pred CCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccc
Confidence 999999999999765432222221 336799999999999998333477888999999999999999999999874334
Q ss_pred chhHHHHHHHHhhhc-------CcEEEEecCCCCCCCCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCC
Q 004503 289 ASDTISVGAFHALKK-------GIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFD 361 (748)
Q Consensus 289 ~~~~i~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 361 (748)
+...+..++..+.++ |++||+||||+|......+...|++|+|++++.+
T Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------------ 195 (273)
T cd07485 140 YSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------------ 195 (273)
T ss_pred cCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------------------------
Confidence 555666677788877 9999999999998876667788999999986533
Q ss_pred CCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCccccccccccc
Q 004503 362 PKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAP 441 (748)
Q Consensus 362 ~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p 441 (748)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCC-cEEecccCCcccCCC
Q 004503 442 GTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGI-DILASYTLMKSLTGL 520 (748)
Q Consensus 442 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~ 520 (748)
+.++.||++|+. +||+|||. .|+++++....
T Consensus 196 ------------------------------------~~~~~~S~~g~~--------~~i~apG~~~i~~~~~~~~~---- 227 (273)
T cd07485 196 ------------------------------------DNKASFSNYGRW--------VDIAAPGVGTILSTVPKLDG---- 227 (273)
T ss_pred ------------------------------------CCcCccccCCCc--------eEEEeCCCCccccccccccC----
Confidence 246789999987 49999999 89888764311
Q ss_pred CCCCccccceeeccccchhhHHHHHHHHhHhcCCC-CCHHHHHHHHhcc
Q 004503 521 KGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPS-WSPAAIKSAIMTT 568 (748)
Q Consensus 521 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~sp~~ik~~L~~T 568 (748)
.....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 228 ---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 ---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11267899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.8e-43 Score=366.17 Aligned_cols=256 Identities=32% Similarity=0.490 Sum_probs=203.1
Q ss_pred CCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHH
Q 004503 136 ESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTS 215 (748)
Q Consensus 136 G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVA 215 (748)
|+||+|+|||+||+++||+|.+..... +.+. . .........|..+||||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~-------------------------~~~~-~---~~~~~~~~~d~~~HGT~vA 51 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF-------------------------ADFV-N---TVNGRTTPYDDNGHGTHVA 51 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc-------------------------cccc-c---cccCCCCCCCCCCchHHHH
Confidence 899999999999999999998542110 0011 0 0011245667889999999
Q ss_pred HhhcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHHhC----CccEEEEccCCCCC-CCc
Q 004503 216 STLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHD----GVNVISISIGGATE-DYA 289 (748)
Q Consensus 216 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~----gvdVIn~S~G~~~~-~~~ 289 (748)
|+|+|...+. .+.+.||||+|+|+.+|+++ ..+ +..+++++||+|+++. +++|||||||.... ...
T Consensus 52 giiag~~~~~-------~~~~~Giap~a~i~~~~v~~-~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~ 123 (264)
T cd07487 52 GIIAGSGRAS-------NGKYKGVAPGANLVGVKVLD-DSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYG 123 (264)
T ss_pred HHHhcCCccc-------CCceEEECCCCeEEEEEeec-CCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCC
Confidence 9999986432 22239999999999999998 544 7788999999999998 99999999998832 446
Q ss_pred hhHHHHHHHHhhhcCcEEEEecCCCCCCCC--cccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCee
Q 004503 290 SDTISVGAFHALKKGIVTVASAGNDGPKWG--TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFY 367 (748)
Q Consensus 290 ~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 367 (748)
.+.+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+...
T Consensus 124 ~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~--------------------------- 176 (264)
T cd07487 124 EDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH--------------------------- 176 (264)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC---------------------------
Confidence 677888888999999999999999998765 456678999999987654100
Q ss_pred eeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcc
Q 004503 368 PLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNV 447 (748)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~ 447 (748)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccc
Q 004503 448 TDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYS 527 (748)
Q Consensus 448 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 527 (748)
...++.||++||+. ++++||||+|||.+|+++.+.... ......+
T Consensus 177 -----------------------------~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~----~~~~~~~ 221 (264)
T cd07487 177 -----------------------------DDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN----PGAGVGS 221 (264)
T ss_pred -----------------------------CccccccccCCCCC--CCCcCCCEEccccceEeccccccc----cCCCCCC
Confidence 01368899999996 889999999999999998654210 0011226
Q ss_pred cceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 528 KFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 528 ~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 222 ~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 222 GYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 7899999999999999999999999999999999999999985
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.3e-42 Score=364.03 Aligned_cols=252 Identities=31% Similarity=0.444 Sum_probs=207.3
Q ss_pred CCCccccCCccccccCCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCC
Q 004503 117 TRSWDFIGLPQTARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNP 196 (748)
Q Consensus 117 ~~s~~~~~~~~~~~w~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~ 196 (748)
+.+|.+..+....+|...+|+||+|+|||+||+++||+|.+. ++...+++. +.
T Consensus 8 ~~~w~~~~~~~~~~~~~~~G~gv~I~viDsGi~~~h~~l~~~------------------------~~~~~~~~~-~~-- 60 (260)
T cd07484 8 SYQWNLDQIGAPKAWDITGGSGVTVAVVDTGVDPTHPDLLKV------------------------KFVLGYDFV-DN-- 60 (260)
T ss_pred ccCCCccccChHHHHhhcCCCCCEEEEEeCCCCCCCcccccC------------------------Ccccceecc-CC--
Confidence 357887777777899444999999999999999999998422 222223333 11
Q ss_pred CCCCCCCCCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccE
Q 004503 197 DPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNV 276 (748)
Q Consensus 197 ~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdV 276 (748)
...+.|..+|||||||||++...++ .+ +.|+||+|+|+.+|+++....+...++++||+++++.|++|
T Consensus 61 ----~~~~~d~~~HGT~vagii~~~~~~~---~~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~i 128 (260)
T cd07484 61 ----DSDAMDDNGHGTHVAGIIAAATNNG---TG-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKV 128 (260)
T ss_pred ----CCCCCCCCCcHHHHHHHHhCccCCC---Cc-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeE
Confidence 1336678999999999999875332 12 28999999999999998223478889999999999999999
Q ss_pred EEEccCCCCCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeee
Q 004503 277 ISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVG 356 (748)
Q Consensus 277 In~S~G~~~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~ 356 (748)
||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 129 in~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------- 186 (260)
T cd07484 129 INLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------- 186 (260)
T ss_pred EEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-------------------
Confidence 999999873 3345666667888999999999999999888888889999999986533
Q ss_pred eecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccc
Q 004503 357 VNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQ 436 (748)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 436 (748)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcc
Q 004503 437 IYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKS 516 (748)
Q Consensus 437 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 516 (748)
+..+.||++|+. +|++|||.+|+++.+.
T Consensus 187 -----------------------------------------~~~~~~s~~g~~--------~~~~apG~~i~~~~~~--- 214 (260)
T cd07484 187 -----------------------------------------DKRASFSNYGKW--------VDVSAPGGGILSTTPD--- 214 (260)
T ss_pred -----------------------------------------CCcCCcCCCCCC--------ceEEeCCCCcEeecCC---
Confidence 245789999986 5999999999988765
Q ss_pred cCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCCC
Q 004503 517 LTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPM 572 (748)
Q Consensus 517 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~ 572 (748)
+.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 215 ----------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 ----------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ----------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 6789999999999999999999999999 99999999999999875
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.4e-42 Score=361.00 Aligned_cols=229 Identities=33% Similarity=0.469 Sum_probs=191.7
Q ss_pred CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCc
Q 004503 132 NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHG 211 (748)
Q Consensus 132 ~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHG 211 (748)
.+++|+||+|||||+||+++||+|.+. +...+.|. +. ....|..+||
T Consensus 20 ~~~~G~gv~VaViDsGi~~~h~~~~~~-------------------------~~~~~~~~-~~-------~~~~d~~~HG 66 (255)
T cd04077 20 DSSTGSGVDVYVLDTGIRTTHVEFGGR-------------------------AIWGADFV-GG-------DPDSDCNGHG 66 (255)
T ss_pred cCCCCCCcEEEEEcCCCCCCChhhhCC-------------------------eeeeeecC-CC-------CCCCCCCccH
Confidence 789999999999999999999999743 11122222 11 1256889999
Q ss_pred hhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCC-CCCHHHHHHHHHHHHhC-----CccEEEEccCCCC
Q 004503 212 THTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSS-GCSDMDILAAFDAAIHD-----GVNVISISIGGAT 285 (748)
Q Consensus 212 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~-----gvdVIn~S~G~~~ 285 (748)
|||||||+++. .||||+|+|+.+|+++ .. ....++++++++|+++. +++|||+|||...
T Consensus 67 T~vAgiia~~~--------------~GvAp~a~i~~~~i~~-~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~ 131 (255)
T cd04077 67 THVAGTVGGKT--------------YGVAKKANLVAVKVLD-CNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA 131 (255)
T ss_pred HHHHHHHHccc--------------cCcCCCCeEEEEEEeC-CCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC
Confidence 99999999864 7999999999999998 54 47788999999999987 4899999999874
Q ss_pred CCCchhHHHHHHHHhhhcCcEEEEecCCCCCCC-CcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCC
Q 004503 286 EDYASDTISVGAFHALKKGIVTVASAGNDGPKW-GTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKE 364 (748)
Q Consensus 286 ~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 364 (748)
...+..++.++.++|+++|+||||+|... ...+...|++|+|||.+.+
T Consensus 132 ----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------------------- 180 (255)
T cd04077 132 ----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------------------- 180 (255)
T ss_pred ----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------------------
Confidence 34566666788899999999999999765 3556678999999986543
Q ss_pred CeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEE
Q 004503 365 KFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTM 444 (748)
Q Consensus 365 ~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 444 (748)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCC
Q 004503 445 VNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDT 524 (748)
Q Consensus 445 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 524 (748)
+.++.||++||. +||+|||.+|+++.....
T Consensus 181 ---------------------------------~~~~~~S~~g~~--------~~i~apG~~i~~~~~~~~--------- 210 (255)
T cd04077 181 ---------------------------------DARASFSNYGSC--------VDIFAPGVDILSAWIGSD--------- 210 (255)
T ss_pred ---------------------------------CCccCcccCCCC--------CcEEeCCCCeEecccCCC---------
Confidence 146789999997 499999999999876421
Q ss_pred ccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCC
Q 004503 525 QYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKP 571 (748)
Q Consensus 525 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~ 571 (748)
..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 211 --~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 211 --TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred --CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 678999999999999999999999999999999999999999974
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-42 Score=358.14 Aligned_cols=253 Identities=30% Similarity=0.393 Sum_probs=187.9
Q ss_pred CcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHh
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSST 217 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi 217 (748)
||+|||||||||++||+|.+... ..+.|..+. ........|..+||||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-------------------------~~~~~~~~~---~~~~~~~~d~~~HGT~vAgi 52 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-------------------------QWADFDENR---RISATEVFDAGGHGTHVSGT 52 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-------------------------CceeccCCC---CCCCCCCCCCCCcHHHHHHH
Confidence 79999999999999999974311 111121010 01123456788999999999
Q ss_pred hcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCCCCCCchhHHHHHH
Q 004503 218 LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVGA 297 (748)
Q Consensus 218 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~~~~i~~a~ 297 (748)
|+|+.. .+...||||+|+|+.+|++. ..++..+++++||+|+++.+++|||||||..... .+.+..++
T Consensus 53 ia~~~~---------~~~~~GvAp~a~i~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~ 120 (254)
T cd07490 53 IGGGGA---------KGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAV 120 (254)
T ss_pred HhcCCC---------CCCEEEECCCCEEEEEEEec-CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHH
Confidence 999864 22237999999999999998 6668889999999999999999999999987432 44555444
Q ss_pred HHhhh-cCcEEEEecCCCCCCCCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccc
Q 004503 298 FHALK-KGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVA 376 (748)
Q Consensus 298 ~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~ 376 (748)
....+ +|++||+||||+|......+...+++|+|||++.+.....+...+
T Consensus 121 ~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g----------------------------- 171 (254)
T cd07490 121 EALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFG----------------------------- 171 (254)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCc-----------------------------
Confidence 44443 699999999999988777777889999999976542100000000
Q ss_pred cCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHHHH
Q 004503 377 KNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDY 456 (748)
Q Consensus 377 ~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 456 (748)
T Consensus 172 -------------------------------------------------------------------------------- 171 (254)
T cd07490 172 -------------------------------------------------------------------------------- 171 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeecccc
Q 004503 457 IHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTS 536 (748)
Q Consensus 457 ~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 536 (748)
.......+.+|.. .....|||++|||.+|+++.... ...+.|..++|||
T Consensus 172 ---------------------~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS 220 (254)
T cd07490 172 ---------------------SSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTS 220 (254)
T ss_pred ---------------------ccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHH
Confidence 0112223334433 24568999999999999965321 1126799999999
Q ss_pred chhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 537 MACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 537 mAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
||||+|||++|||+|++|+|++++||.+|++||+
T Consensus 221 ~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 221 MAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-42 Score=368.27 Aligned_cols=263 Identities=21% Similarity=0.176 Sum_probs=185.9
Q ss_pred cEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHhh
Q 004503 139 IVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTL 218 (748)
Q Consensus 139 V~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgii 218 (748)
.+|||||||||.+||+|.+.-. ....+. +. .....|..||||||||||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~-------------------------~~~~~~-~~------~~~~~d~~gHGT~vAgii 48 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALA-------------------------EDDLDS-DE------PGWTADDLGHGTAVAGLA 48 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhc-------------------------cccccc-cC------CCCcCCCCCChHHHHHHH
Confidence 3799999999999999974310 011111 10 011578999999999999
Q ss_pred cccccCCccccccccccccccccCceEEEEEEeecCCC-----CCHHHHHHHHHHHHhCC---ccEEEEccCCCCCCCc-
Q 004503 219 AGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-----CSDMDILAAFDAAIHDG---VNVISISIGGATEDYA- 289 (748)
Q Consensus 219 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~~g---vdVIn~S~G~~~~~~~- 289 (748)
++....+ ....|+||+|+|+.+|++. ..+ ....++++||+|+++.. ++|||||||.......
T Consensus 49 a~~~~~~--------~~~~gvap~~~l~~~kv~~-~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~ 119 (291)
T cd04847 49 LYGDLTL--------PGNGLPRPGCRLESVRVLP-PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDG 119 (291)
T ss_pred HcCcccC--------CCCCCcccceEEEEEEEcC-CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCC
Confidence 9764321 1228999999999999998 542 56778999999999853 5999999999832211
Q ss_pred -hhHHHHHHH-HhhhcCcEEEEecCCCCCCCCc------------ccCCCCceEEEeccccccceeeeeeeCCCeEEeee
Q 004503 290 -SDTISVGAF-HALKKGIVTVASAGNDGPKWGT------------VSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGV 355 (748)
Q Consensus 290 -~~~i~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 355 (748)
...+..++. .+.++|++||+||||+|..... .+..++++|+|||++.+.....+...
T Consensus 120 ~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~--------- 190 (291)
T cd04847 120 RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY--------- 190 (291)
T ss_pred CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc---------
Confidence 123444443 3568999999999999987643 23457899999998765211000000
Q ss_pred eeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCccccc
Q 004503 356 GVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVA 435 (748)
Q Consensus 356 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 435 (748)
+.
T Consensus 191 --------------------------------------------~~---------------------------------- 192 (291)
T cd04847 191 --------------------------------------------SA---------------------------------- 192 (291)
T ss_pred --------------------------------------------cc----------------------------------
Confidence 00
Q ss_pred ccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCc
Q 004503 436 QIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMK 515 (748)
Q Consensus 436 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 515 (748)
......+.||+|||.. ++.+||||+|||++|.++.....
T Consensus 193 ---------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~ 231 (291)
T cd04847 193 ---------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNA 231 (291)
T ss_pred ---------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCC
Confidence 0001234499999996 89999999999999988654211
Q ss_pred cc-----CCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 516 SL-----TGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 516 ~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
.. ...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 232 ADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00 00001112368999999999999999999999999999999999999999985
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-42 Score=363.99 Aligned_cols=251 Identities=25% Similarity=0.358 Sum_probs=183.2
Q ss_pred cccc-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCC
Q 004503 128 TARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPID 206 (748)
Q Consensus 128 ~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D 206 (748)
..+| .+.+|+||+||||||||+..|| |.+..+. +.. .+. .+ ......|
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~~-----------------~~~-~~-----~~~~~~D 59 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VRV-----------------VLA-PG-----ATDPACD 59 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------cee-----------------ecC-CC-----CCCCCCC
Confidence 4678 8999999999999999999998 7543211 100 000 00 1134567
Q ss_pred CCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCCCC
Q 004503 207 VDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGATE 286 (748)
Q Consensus 207 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~ 286 (748)
++|||||||+++ .||||+|+|+.+|+++ . ..+++++||+||+++|++|||||||....
T Consensus 60 ~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~-~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~ 117 (298)
T cd07494 60 ENGHGTGESANL------------------FAIAPGAQFIGVKLGG-P---DLVNSVGAFKKAISLSPDIISNSWGYDLR 117 (298)
T ss_pred CCCcchheeece------------------eEeCCCCeEEEEEccC-C---CcHHHHHHHHHHHhcCCCEEEeecccCCC
Confidence 889999999864 6899999999999987 3 56789999999999999999999998621
Q ss_pred C----------CchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeee
Q 004503 287 D----------YASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVG 356 (748)
Q Consensus 287 ~----------~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~ 356 (748)
. .....+..++.+|.++|++||+||||++. .++...|++|+|||++.+.. +....
T Consensus 118 ~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~~~--- 182 (298)
T cd07494 118 SPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GARRA--- 182 (298)
T ss_pred CcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccccc---
Confidence 1 12345777888899999999999999975 45888999999999754310 00000
Q ss_pred eecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccc
Q 004503 357 VNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQ 436 (748)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 436 (748)
T Consensus 183 -------------------------------------------------------------------------------- 182 (298)
T cd07494 183 -------------------------------------------------------------------------------- 182 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcE----------------
Q 004503 437 IYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDI---------------- 500 (748)
Q Consensus 437 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI---------------- 500 (748)
....+.|++. ..+++.|||+
T Consensus 183 ----------------------------------------~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~~~~~~ 218 (298)
T cd07494 183 ----------------------------------------SSYASGFRSK----IYPGRQVPDVCGLVGMLPHAAYLMLP 218 (298)
T ss_pred ----------------------------------------cccccCcccc----cCCCCccCccccccCcCCcccccccc
Confidence 0001112111 1245566776
Q ss_pred EcCCCcEEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCCCCCC
Q 004503 501 AAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQR 575 (748)
Q Consensus 501 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~ 575 (748)
+|||..|.+++.... ........|..++|||||||||||++|||+|++|.|++++||.+|++||+++...
T Consensus 219 ~APG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 219 VPPGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTKG 288 (298)
T ss_pred cCCCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC
Confidence 479999876653210 0011126799999999999999999999999999999999999999999988664
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.9e-42 Score=362.01 Aligned_cols=260 Identities=26% Similarity=0.320 Sum_probs=190.6
Q ss_pred CcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceE-e---------eeecccCCCC--CCCCCCCCC
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLI-G---------ARYFKLDGNP--DPWDILSPI 205 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kii-g---------~~~~~~~~~~--~~~~~~~~~ 205 (748)
||+|||||||||++||+|.+... .+++|........ + -.++....+. .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~------------~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 68 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL------------PGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVS 68 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc------------cCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCC
Confidence 79999999999999999985421 1223321000000 0 0000000000 001123345
Q ss_pred CCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHH----------hCCcc
Q 004503 206 DVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAI----------HDGVN 275 (748)
Q Consensus 206 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~----------~~gvd 275 (748)
+..+|||||||||+|...++ .|+ .||||+|+|+.+|+++ ..+...+++++|++|++ .++++
T Consensus 69 ~~~~HGT~vAgiiaa~~~~~---~~~-----~GvAp~a~i~~~~v~~-~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~ 139 (285)
T cd07496 69 PSSWHGTHVAGTIAAVTNNG---VGV-----AGVAWGARILPVRVLG-KCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAK 139 (285)
T ss_pred CCCCCHHHHHHHHhCcCCCC---CCc-----eeecCCCeEEEEEEec-CCCCcHHHHHHHHHHHhccCcCCCcccCCCCe
Confidence 67899999999999986432 222 8999999999999998 66668899999999998 46799
Q ss_pred EEEEccCCCCCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCC-CcccCCCCceEEEeccccccceeeeeeeCCCeEEee
Q 004503 276 VISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKW-GTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSG 354 (748)
Q Consensus 276 VIn~S~G~~~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g 354 (748)
|||||||..... ...+..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 140 Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------- 200 (285)
T cd07496 140 VINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------------- 200 (285)
T ss_pred EEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------------
Confidence 999999987321 45666777788999999999999999876 5566778899999986543
Q ss_pred eeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccc
Q 004503 355 VGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDV 434 (748)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 434 (748)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCC
Q 004503 435 AQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLM 514 (748)
Q Consensus 435 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 514 (748)
+.++.||++||. +||+|||.+|.++....
T Consensus 201 -------------------------------------------~~~~~~S~~g~~--------vdi~apG~~i~~~~~~~ 229 (285)
T cd07496 201 -------------------------------------------GQRASYSNYGPA--------VDVSAPGGDCASDVNGD 229 (285)
T ss_pred -------------------------------------------CCcccccCCCCC--------CCEEeCCCCccccCCCC
Confidence 246889999997 59999999999887643
Q ss_pred cccC--CCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhcc
Q 004503 515 KSLT--GLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTT 568 (748)
Q Consensus 515 ~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 568 (748)
..+. ..........|..++|||||||+|||++||++|++|+|++++||++|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 230 GYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2110 00111122678999999999999999999999999999999999999986
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.4e-41 Score=362.66 Aligned_cols=277 Identities=30% Similarity=0.363 Sum_probs=201.0
Q ss_pred CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCc
Q 004503 132 NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHG 211 (748)
Q Consensus 132 ~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHG 211 (748)
.+++|+||+|||||||||++||+|.+... .+.+| .++++.....+. ....|..+||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~--~~~~~~~~~~~~----------~~~~d~~~HG 57 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNL--FHRKIVRYDSLS----------DTKDDVDGHG 57 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCcc--CcccEEEeeccC----------CCCCCCCCCc
Confidence 47899999999999999999999975422 11112 244555444443 1223889999
Q ss_pred hhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCC--CCHHHHHHHHHHHHhCCccEEEEccCCCCCCCc
Q 004503 212 THTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG--CSDMDILAAFDAAIHDGVNVISISIGGATEDYA 289 (748)
Q Consensus 212 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~ 289 (748)
|||||||+|+..+.... ..+.||||+|+|+.+|+++ ..+ ....++..+++++.+.+++|||||||......
T Consensus 58 T~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~- 130 (293)
T cd04842 58 THVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGD-TSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG- 130 (293)
T ss_pred chhheeeccCCcCCCcc-----cccccccccCeEEEEEeec-cCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-
Confidence 99999999987543211 1239999999999999988 443 56677889999999999999999999984321
Q ss_pred hhHHHHHHHHhh-h-cCcEEEEecCCCCCCCC---cccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCC
Q 004503 290 SDTISVGAFHAL-K-KGIVTVASAGNDGPKWG---TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKE 364 (748)
Q Consensus 290 ~~~i~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 364 (748)
......++.++. + +|+++|+||||+|.... ..+...+++|+|||++.+.....
T Consensus 131 ~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------------------- 188 (293)
T cd04842 131 YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------------------- 188 (293)
T ss_pred cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------------------
Confidence 122223332332 3 89999999999998764 56677899999999876521000
Q ss_pred CeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEE
Q 004503 365 KFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTM 444 (748)
Q Consensus 365 ~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 444 (748)
..|.. ..
T Consensus 189 ---------------------~~~~~------------~~---------------------------------------- 195 (293)
T cd04842 189 ---------------------EGGLG------------QS---------------------------------------- 195 (293)
T ss_pred ---------------------ccccc------------cc----------------------------------------
Confidence 00000 00
Q ss_pred EcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCC
Q 004503 445 VNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDT 524 (748)
Q Consensus 445 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 524 (748)
.....++.||++||+. .+++||||+|||++|+++..... .....
T Consensus 196 ------------------------------~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~ 239 (293)
T cd04842 196 ------------------------------DNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDT 239 (293)
T ss_pred ------------------------------CCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCC
Confidence 0013578999999986 78999999999999999875420 00112
Q ss_pred ccccceeeccccchhhHHHHHHHHhHhcC-----C---CCCHHHHHHHHhccCC
Q 004503 525 QYSKFTLMSGTSMACPHIAGVVAYVKSFH-----P---SWSPAAIKSAIMTTAK 570 (748)
Q Consensus 525 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~~sp~~ik~~L~~TA~ 570 (748)
....|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 240 ~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 240 SDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 22678999999999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-41 Score=351.53 Aligned_cols=240 Identities=30% Similarity=0.381 Sum_probs=189.3
Q ss_pred cEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHhh
Q 004503 139 IVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTL 218 (748)
Q Consensus 139 V~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgii 218 (748)
|+|||||+||+++||+|.+.. +++..+.+. +. .....|..+|||||||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-----------------------~~~~~~~~~-~~------~~~~~~~~~HGT~vAgii 50 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-----------------------KLVPGWNFV-SN------NDPTSDIDGHGTACAGVA 50 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-----------------------CccCCcccc-CC------CCCCCCCCCCHHHHHHHH
Confidence 789999999999999998520 000111111 10 124567899999999999
Q ss_pred cccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCCC-CCCchhHHHHHH
Q 004503 219 AGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGAT-EDYASDTISVGA 297 (748)
Q Consensus 219 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~-~~~~~~~i~~a~ 297 (748)
+|+..+. .+ +.||||+|+|+.+|+++....+..+++.++++|+++.+++|||||||... .......+..++
T Consensus 51 ag~~~~~---~~-----~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~ 122 (242)
T cd07498 51 AAVGNNG---LG-----VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAA 122 (242)
T ss_pred HhccCCC---ce-----eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHH
Confidence 9986432 12 28999999999999998233477889999999999999999999999873 234466777777
Q ss_pred HHhhh-cCcEEEEecCCCCCCCCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccc
Q 004503 298 FHALK-KGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVA 376 (748)
Q Consensus 298 ~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~ 376 (748)
..+.+ +|+++|+||||+|......+...|++|+|||++.+
T Consensus 123 ~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------------------------------- 163 (242)
T cd07498 123 TYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN--------------------------------------- 163 (242)
T ss_pred HHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC---------------------------------------
Confidence 78888 99999999999998876677789999999986543
Q ss_pred cCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHHHH
Q 004503 377 KNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDY 456 (748)
Q Consensus 377 ~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 456 (748)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeecccc
Q 004503 457 IHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTS 536 (748)
Q Consensus 457 ~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 536 (748)
+.+++||++||. +|++|||.+++......... .+...+.|..++|||
T Consensus 164 ---------------------~~~~~~s~~g~~--------~~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS 210 (242)
T cd07498 164 ---------------------DARASYSNYGNY--------VDLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTS 210 (242)
T ss_pred ---------------------CCccCcCCCCCC--------eEEEeCcCCcccCCcccccc----ccCCCCceEeeCcHH
Confidence 246789999997 59999999998875432110 112236788999999
Q ss_pred chhhHHHHHHHHhHhcCCCCCHHHHHHHHhcc
Q 004503 537 MACPHIAGVVAYVKSFHPSWSPAAIKSAIMTT 568 (748)
Q Consensus 537 mAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 568 (748)
||||+|||++|||+|++|+|++++||++|++|
T Consensus 211 ~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 211 FASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999976
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-40 Score=349.42 Aligned_cols=251 Identities=32% Similarity=0.467 Sum_probs=190.8
Q ss_pred CCcEEEEEecCCCCCCcCCCCCCCCCC-CCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHH
Q 004503 137 SDIVVGLMDTGITPESESFKDSGFGPP-PAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTS 215 (748)
Q Consensus 137 ~gV~VaVIDtGId~~Hp~f~d~~~~~~-~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVA 215 (748)
+||+|||||||||++||+|.+...... ...+.+.-..+.+|. .+.. .+.|. .+..++.|..|||||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~-------~~~~~~~d~~~HGT~va 70 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV---DDIY-GWNFV-------NNDNDPMDDNGHGTHVA 70 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc---cCCC-ccccc-------CCCCCCCCCCCcHHHHH
Confidence 699999999999999999986421100 001111111111111 0000 01111 12355678899999999
Q ss_pred HhhcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHHhCCccEEEEccCCCCCCCchhHHH
Q 004503 216 STLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTIS 294 (748)
Q Consensus 216 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~~~~i~ 294 (748)
|||+|...++.. +.||||+|+|+.+|++. ..+ ++..+++++|+++++.+++|||+|||.... ...+.
T Consensus 71 ~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~ 138 (259)
T cd07473 71 GIIGAVGNNGIG--------IAGVAWNVKIMPLKFLG-ADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALR 138 (259)
T ss_pred HHHHCcCCCCCc--------eEEeCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHH
Confidence 999998644321 38999999999999998 554 888999999999999999999999998732 45667
Q ss_pred HHHHHhhhcCcEEEEecCCCCCCC---CcccC--CCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeee
Q 004503 295 VGAFHALKKGIVTVASAGNDGPKW---GTVSN--HAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPL 369 (748)
Q Consensus 295 ~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~ 369 (748)
.++.++.++|+++|+||||+|... ..++. ..|++|+||+.+.+
T Consensus 139 ~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------------------- 186 (259)
T cd07473 139 DAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------------------- 186 (259)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------------------
Confidence 777788999999999999998763 22333 35788888875533
Q ss_pred EeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccc
Q 004503 370 VSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTD 449 (748)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 449 (748)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccc
Q 004503 450 GDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKF 529 (748)
Q Consensus 450 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 529 (748)
+.++.||++||.. ||+.|||.++++.... ..|
T Consensus 187 ----------------------------~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~-------------~~~ 218 (259)
T cd07473 187 ----------------------------DALASFSNYGKKT-------VDLAAPGVDILSTSPG-------------GGY 218 (259)
T ss_pred ----------------------------CCcCcccCCCCCC-------cEEEeccCCeEeccCC-------------CcE
Confidence 2456799999874 8999999999997654 678
Q ss_pred eeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 530 TLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 530 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 219 ~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 219 GYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999985
No 28
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.7e-41 Score=357.07 Aligned_cols=260 Identities=28% Similarity=0.328 Sum_probs=182.8
Q ss_pred CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCc
Q 004503 132 NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHG 211 (748)
Q Consensus 132 ~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHG 211 (748)
.+++|+||+|||||||||.+||+|.+... ..++|. ++ ....|.+|||
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-------------------------~~~~~~-~~-------~~~~d~~gHG 49 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI-------------------------TTKSFV-GG-------EDVQDGHGHG 49 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc-------------------------cCcccC-CC-------CCCCCCCCcH
Confidence 46899999999999999999999975421 111222 11 2356789999
Q ss_pred hhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCCCC-----
Q 004503 212 THTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGATE----- 286 (748)
Q Consensus 212 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~----- 286 (748)
|||||||+|+..+ +...||||+|+|+.+|++.....+...++++||+||++.|++|||||||....
T Consensus 50 T~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~ 120 (297)
T cd07480 50 THCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQ 120 (297)
T ss_pred HHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccc
Confidence 9999999997643 22379999999999999983344777889999999999999999999998531
Q ss_pred -----CCchhHHHHHHHHh---------------hhcCcEEEEecCCCCCCCCcccC-----CCCceEEEecccccccee
Q 004503 287 -----DYASDTISVGAFHA---------------LKKGIVTVASAGNDGPKWGTVSN-----HAPWLVTVAASGIDRQFK 341 (748)
Q Consensus 287 -----~~~~~~i~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~~p~vitVgA~~~~~~~~ 341 (748)
......++.....+ .++|++||+||||+|........ ..+++++|++....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~---- 196 (297)
T cd07480 121 GWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL---- 196 (297)
T ss_pred cCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC----
Confidence 11122233222233 67999999999999865432111 11233333322111
Q ss_pred eeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCc
Q 004503 342 SKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGG 421 (748)
Q Consensus 342 ~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga 421 (748)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEE
Q 004503 422 VGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIA 501 (748)
Q Consensus 422 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~ 501 (748)
+....|+++.+. ...||||+
T Consensus 197 --------------------------------------------------------~~~~~~~~~~~~----~~~~~dv~ 216 (297)
T cd07480 197 --------------------------------------------------------GRTGNFSAVANF----SNGEVDIA 216 (297)
T ss_pred --------------------------------------------------------CCCCCccccCCC----CCCceEEE
Confidence 012223333222 23468999
Q ss_pred cCCCcEEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhcc----CCCCCCCCC
Q 004503 502 APGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTT----AKPMSQRVN 577 (748)
Q Consensus 502 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T----A~~~~~~~~ 577 (748)
|||.+|+++.+. +.|..++|||||||+|||++||++|++|.+++.+++.+|+.. +......+.
T Consensus 217 ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~ 283 (297)
T cd07480 217 APGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGL 283 (297)
T ss_pred eCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCC
Confidence 999999998875 689999999999999999999999999999988887777732 222222222
Q ss_pred CCCccCCCCCcCCcc
Q 004503 578 NEAEFAYGAGQVNPQ 592 (748)
Q Consensus 578 ~~~~~~~G~G~vn~~ 592 (748)
....+|+|++++.
T Consensus 284 --~~~~~g~G~~~~~ 296 (297)
T cd07480 284 --DLPDRGVGLGLAP 296 (297)
T ss_pred --ChhhcCCceeecC
Confidence 3678999999875
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.9e-41 Score=351.70 Aligned_cols=246 Identities=18% Similarity=0.164 Sum_probs=177.4
Q ss_pred Ccccccc--CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCC
Q 004503 125 LPQTARR--NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDIL 202 (748)
Q Consensus 125 ~~~~~~w--~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~ 202 (748)
++...+| ....|+||+|+|||+|||.+||+|.++.... . ++ .
T Consensus 2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~----------------------------~-~~-------~ 45 (277)
T cd04843 2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL----------------------------I-SG-------L 45 (277)
T ss_pred CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc----------------------------c-CC-------C
Confidence 4445788 4555899999999999999999998542110 0 00 1
Q ss_pred CCCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHh----CCccEEE
Q 004503 203 SPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIH----DGVNVIS 278 (748)
Q Consensus 203 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~----~gvdVIn 278 (748)
.+.|+++|||||||||+|..+ .+|. .||||+|+|+.+|++. .++++++|.+|++ .++.+||
T Consensus 46 ~~~d~~gHGT~VAGiIaa~~n----~~G~-----~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in 110 (277)
T cd04843 46 TDQADSDHGTAVLGIIVAKDN----GIGV-----TGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLE 110 (277)
T ss_pred CCCCCCCCcchhheeeeeecC----CCce-----eeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEE
Confidence 256789999999999999642 1233 8999999999999974 2346667777766 4577899
Q ss_pred EccCCCCCC------CchhHHHHHHHHhhhcCcEEEEecCCCCCCCCccc-------------CCCCceEEEeccccccc
Q 004503 279 ISIGGATED------YASDTISVGAFHALKKGIVTVASAGNDGPKWGTVS-------------NHAPWLVTVAASGIDRQ 339 (748)
Q Consensus 279 ~S~G~~~~~------~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~vitVgA~~~~~~ 339 (748)
||||..... .....+..++.++.++|+++|+||||++....... ...|++|+|||++.+.
T Consensus 111 ~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~- 189 (277)
T cd04843 111 MQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT- 189 (277)
T ss_pred ccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-
Confidence 999987211 12345556777888999999999999987532111 1124677777654320
Q ss_pred eeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhc
Q 004503 340 FKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGI 419 (748)
Q Consensus 340 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~ 419 (748)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCc
Q 004503 420 GGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPD 499 (748)
Q Consensus 420 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPD 499 (748)
...++.||++||. +|
T Consensus 190 ---------------------------------------------------------~~~~~~fSn~G~~--------vd 204 (277)
T cd04843 190 ---------------------------------------------------------GHTRLAFSNYGSR--------VD 204 (277)
T ss_pred ---------------------------------------------------------CCccccccCCCCc--------cc
Confidence 0136899999997 59
Q ss_pred EEcCCCcEEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHh----c-CCCCCHHHHHHHHhccCC
Q 004503 500 IAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKS----F-HPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 500 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~sp~~ik~~L~~TA~ 570 (748)
|.|||++|+++....... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 205 i~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 205 VYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999998753211 0011113357899999999999999999975 3 499999999999999974
No 30
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-40 Score=343.05 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=119.2
Q ss_pred CCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHH
Q 004503 136 ESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTS 215 (748)
Q Consensus 136 G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVA 215 (748)
+++|+|||||||||++||+|.+. ...+.+|. .+............|.+|||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------i~~~~~~~-------------~~~~~~~~~~~~~~d~~gHGT~vA 56 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------IIGGKSFS-------------PYEGDGNKVSPYYVSADGHGTAMA 56 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------cccCCCCC-------------CCCCCcccCCCCCCCCCCcHHHHH
Confidence 78999999999999999999743 11122232 010000000122357899999999
Q ss_pred HhhcccccCCccccccccccccccccCceEEEEEEeecCCC-------CCHHHHHHHHHHHHhCCccEEEEccCCCCCC-
Q 004503 216 STLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-------CSDMDILAAFDAAIHDGVNVISISIGGATED- 287 (748)
Q Consensus 216 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-------~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~- 287 (748)
|||+ |+||+|+|+++|+++ ..+ ++...+++||+||+++|+||||||||.....
T Consensus 57 giI~------------------gvap~a~i~~~kv~~-~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~ 117 (247)
T cd07491 57 RMIC------------------RICPSAKLYVIKLED-RPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPED 117 (247)
T ss_pred HHHH------------------HHCCCCeEEEEEecc-cCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccc
Confidence 9994 679999999999998 432 4678899999999999999999999987321
Q ss_pred --CchhHHHHHHHHhhhcCcEEEEecCCCCCCCC-c--ccCCCCceEEEeccccc
Q 004503 288 --YASDTISVGAFHALKKGIVTVASAGNDGPKWG-T--VSNHAPWLVTVAASGID 337 (748)
Q Consensus 288 --~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~-~--~~~~~p~vitVgA~~~~ 337 (748)
.....+..++.+|.++|++||+||||+|.... . .+...|++|+|||++.+
T Consensus 118 ~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~ 172 (247)
T cd07491 118 NDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED 172 (247)
T ss_pred cccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC
Confidence 23567778888999999999999999998754 3 34467899999987654
No 31
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=4.7e-40 Score=338.07 Aligned_cols=226 Identities=35% Similarity=0.502 Sum_probs=185.4
Q ss_pred CcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHh
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSST 217 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi 217 (748)
||+|||||+||+++||+|.+.. +..+.|. +. . .....|..+|||||||+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-------------------------~~~~~~~-~~----~-~~~~~~~~~HGT~vA~i 49 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-------------------------VGGANFT-GD----D-NNDYQDGNGHGTHVAGI 49 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-------------------------cCccccc-CC----C-CCCCCCCCCCHHHHHHH
Confidence 7999999999999999997431 1111222 11 0 03456788999999999
Q ss_pred hcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHHhCCccEEEEccCCCCCCCchhHHHHH
Q 004503 218 LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVG 296 (748)
Q Consensus 218 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~~~~i~~a 296 (748)
|++..... .+.|+||+|+|+.+|+++ ..+ +...+++++++||++.|++|||||||... ....+..+
T Consensus 50 i~~~~~~~---------~~~giap~a~i~~~~~~~-~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~ 116 (229)
T cd07477 50 IAALDNGV---------GVVGVAPEADLYAVKVLN-DDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREA 116 (229)
T ss_pred HhcccCCC---------ccEeeCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHH
Confidence 99976331 238999999999999998 544 67789999999999999999999999863 23345556
Q ss_pred HHHhhhcCcEEEEecCCCCCCCCcc--cCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccc
Q 004503 297 AFHALKKGIVTVASAGNDGPKWGTV--SNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGAD 374 (748)
Q Consensus 297 ~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~ 374 (748)
+..+.++|+++|+||||++...... +...|++|+||+++.+
T Consensus 117 ~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------------- 159 (229)
T cd07477 117 IKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------------- 159 (229)
T ss_pred HHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-------------------------------------
Confidence 6688899999999999999876654 7788999999986543
Q ss_pred cccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHH
Q 004503 375 VAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNIT 454 (748)
Q Consensus 375 ~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 454 (748)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeecc
Q 004503 455 DYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSG 534 (748)
Q Consensus 455 ~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 534 (748)
+.++.||++|+. +|+.|||.+|+++++. +.|..++|
T Consensus 160 -----------------------~~~~~~s~~g~~--------~~~~apg~~i~~~~~~-------------~~~~~~~G 195 (229)
T cd07477 160 -----------------------NNRASFSSTGPE--------VELAAPGVDILSTYPN-------------NDYAYLSG 195 (229)
T ss_pred -----------------------CCcCCccCCCCC--------ceEEeCCCCeEEecCC-------------CCEEEEcc
Confidence 245789999986 6999999999998875 67899999
Q ss_pred ccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhcc
Q 004503 535 TSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTT 568 (748)
Q Consensus 535 TSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 568 (748)
||||||+|||++|||+|++|+++|.+||++|++|
T Consensus 196 TS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 196 TSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999986
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=4.4e-41 Score=356.64 Aligned_cols=274 Identities=35% Similarity=0.516 Sum_probs=209.1
Q ss_pred EEEEEecCCCCCCcCCC-CCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHhh
Q 004503 140 VVGLMDTGITPESESFK-DSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTL 218 (748)
Q Consensus 140 ~VaVIDtGId~~Hp~f~-d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgii 218 (748)
+|||||||||++||+|. ++ + ...++.+.+.|. ++. .......|..+|||||||+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~-------------------~~~~~~~~~~~~-~~~---~~~~~~~~~~~HGT~va~ii 56 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F-------------------IWSKVPGGYNFV-DGN---PNPSPSDDDNGHGTHVAGII 56 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E-------------------EEEEEEEEEETT-TTB---STTTSSSTSSSHHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCC-c-------------------ccccccceeecc-CCC---CCcCccccCCCccchhhhhc
Confidence 69999999999999997 22 0 112333445554 221 11245677899999999999
Q ss_pred cccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHH-hCCccEEEEccCCC---CCCCchhHHH
Q 004503 219 AGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAI-HDGVNVISISIGGA---TEDYASDTIS 294 (748)
Q Consensus 219 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~gvdVIn~S~G~~---~~~~~~~~i~ 294 (748)
+|.. . .+..+ ..|+||+|+|+.+|++. ..+....+++++|++++ +++++|||||||.. ......+.+.
T Consensus 57 ~~~~-~-~~~~~-----~~Gva~~a~l~~~~i~~-~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~ 128 (282)
T PF00082_consen 57 AGNG-G-NNGPG-----INGVAPNAKLYSYKIFD-NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILE 128 (282)
T ss_dssp HHTT-S-SSSSS-----ETCSSTTSEEEEEECSS-TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHH
T ss_pred cccc-c-ccccc-----ccccccccccccccccc-ccccccccccchhhhhhhccCCccccccccccccccccccccccc
Confidence 9986 2 22122 28999999999999987 55578888999999999 89999999999883 2223445566
Q ss_pred HHHHHhhhcCcEEEEecCCCCCCCCc---ccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEe
Q 004503 295 VGAFHALKKGIVTVASAGNDGPKWGT---VSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVS 371 (748)
Q Consensus 295 ~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~ 371 (748)
.+...+.++|+++|+||||+|..... .+...+++|+||+.+.+
T Consensus 129 ~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------------------- 174 (282)
T PF00082_consen 129 EAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------------------- 174 (282)
T ss_dssp HHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------------------
T ss_pred cccccccccCcceeeccccccccccccccccccccccccccccccc----------------------------------
Confidence 66778889999999999999877643 44556888998875532
Q ss_pred ccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchH
Q 004503 372 GADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGD 451 (748)
Q Consensus 372 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~ 451 (748)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCcccccee
Q 004503 452 NITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTL 531 (748)
Q Consensus 452 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 531 (748)
..++.||++|+.. .++++||||+|||.+|+++++... ...|..
T Consensus 175 --------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~ 217 (282)
T PF00082_consen 175 --------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTS 217 (282)
T ss_dssp --------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEE
T ss_pred --------------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccc
Confidence 1457899997543 378899999999999988886521 035788
Q ss_pred eccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCCCCCCCCCCCccCCCCCcCCccccCC
Q 004503 532 MSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVS 596 (748)
Q Consensus 532 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 596 (748)
.+|||||||+|||++||++|++|+|++++||.+|++||.+.........+..||||+||+.+|++
T Consensus 218 ~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 218 FSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred cCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999999999999832222246788999999999874
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=6.3e-40 Score=350.06 Aligned_cols=253 Identities=29% Similarity=0.373 Sum_probs=175.6
Q ss_pred CcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHh
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSST 217 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi 217 (748)
.|+|||||||||++||+|.+..... . ..+. ....+.........+.....|..||||||||+
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~-------~~~~-------~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 62 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----S-------KNLV-------PKGGYDGKEAGETGDINDIVDKLGHGTAVAGQ 62 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----c-------cccc-------cCCCcCCccccccCCCCcCCCCCCcHhHHHHH
Confidence 4899999999999999998531100 0 0000 00000000001111224456789999999999
Q ss_pred hcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHHhCCccEEEEccCCCCCC--------C
Q 004503 218 LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVNVISISIGGATED--------Y 288 (748)
Q Consensus 218 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~--------~ 288 (748)
|+|+... .||||+|+|+.+|+++ ..+ ....++++||+||++++++|||||||..... .
T Consensus 63 ia~~~~~------------~GvAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~ 129 (294)
T cd07482 63 IAANGNI------------KGVAPGIGIVSYRVFG-SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDV 129 (294)
T ss_pred HhcCCCC------------ceeCCCCEEEEEEeec-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchh
Confidence 9986421 5999999999999998 555 4889999999999999999999999986211 1
Q ss_pred chhHHHHHHHHhhhcCcEEEEecCCCCCCCCc----------------------ccCCCCceEEEeccccccceeeeeee
Q 004503 289 ASDTISVGAFHALKKGIVTVASAGNDGPKWGT----------------------VSNHAPWLVTVAASGIDRQFKSKVKT 346 (748)
Q Consensus 289 ~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (748)
..+.+..++..+.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 130 ~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~---------- 199 (294)
T cd07482 130 EYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN---------- 199 (294)
T ss_pred hhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC----------
Confidence 22456666677889999999999999965411 1122333444443321
Q ss_pred CCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEE
Q 004503 347 GNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIV 426 (748)
Q Consensus 347 ~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~ 426 (748)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCc
Q 004503 427 GSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGID 506 (748)
Q Consensus 427 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~ 506 (748)
.+.++.||++|+.. +|++|||++
T Consensus 200 --------------------------------------------------~~~~~~~S~~g~~~-------~~~~apG~~ 222 (294)
T cd07482 200 --------------------------------------------------NGNLSSFSNYGNSR-------IDLAAPGGD 222 (294)
T ss_pred --------------------------------------------------CCCcCccccCCCCc-------ceEECCCCC
Confidence 13567899999864 799999999
Q ss_pred EEecccCCc--c-cCC------CCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCH-HHHHHHHhcc
Q 004503 507 ILASYTLMK--S-LTG------LKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP-AAIKSAIMTT 568 (748)
Q Consensus 507 I~sa~~~~~--~-~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp-~~ik~~L~~T 568 (748)
+........ . ... .......+.|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 223 FLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred cccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 853221110 0 000 000122367999999999999999999999999999999 9999999986
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-38 Score=325.64 Aligned_cols=221 Identities=21% Similarity=0.293 Sum_probs=173.3
Q ss_pred CcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHh
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSST 217 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi 217 (748)
||+|||||||||++||+|.+.... +..|. + .+ +. .+.....|..|||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~-~------~~-~~-------~~~~~~~d~~gHGT~vAgi 53 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTI-D------LE-II-------VVSAEGGDKDGHGTACAGI 53 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------ccccc-c------cc-cc-------cCCCCCCCCCCcHHHHHHH
Confidence 799999999999999999854211 11111 0 00 00 1124556789999999999
Q ss_pred hcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHHhCCccEEEEccCCCCCCCchhHHHHH
Q 004503 218 LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVG 296 (748)
Q Consensus 218 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~~~~i~~a 296 (748)
|++. +|+++|+.+|+++ ..+ +..+++++||+|++++|++|||||||..... ....+..+
T Consensus 54 ia~~------------------~p~~~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~ 113 (222)
T cd07492 54 IKKY------------------APEAEIGSIKILG-EDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKEL 113 (222)
T ss_pred HHcc------------------CCCCeEEEEEEeC-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHH
Confidence 9753 5999999999998 544 8889999999999999999999999987432 23456667
Q ss_pred HHHhhhcCcEEEEecCCCCCCCCcccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccccc
Q 004503 297 AFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVA 376 (748)
Q Consensus 297 ~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~ 376 (748)
+.++.++|+++|+||||++.... .+...|.+|+|++.+.++
T Consensus 114 ~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~-------------------------------------- 154 (222)
T cd07492 114 LEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD-------------------------------------- 154 (222)
T ss_pred HHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC--------------------------------------
Confidence 77888899999999999987543 366778899998754320
Q ss_pred cCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHHHH
Q 004503 377 KNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDY 456 (748)
Q Consensus 377 ~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 456 (748)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccceeecccc
Q 004503 457 IHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTS 536 (748)
Q Consensus 457 ~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 536 (748)
..+ .+++ ++|+.|||.+|+++++. +.|..++|||
T Consensus 155 ----------------------~~~---~~~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GTS 188 (222)
T cd07492 155 ----------------------PKS---FWYI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGNS 188 (222)
T ss_pred ----------------------Ccc---cccC--------CceEEeCCCCeEeecCC-------------CCEEEeccHH
Confidence 011 1133 36999999999998865 6789999999
Q ss_pred chhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 537 MACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 537 mAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 189 ~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 189 FAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=3.1e-39 Score=345.30 Aligned_cols=247 Identities=20% Similarity=0.208 Sum_probs=178.2
Q ss_pred ccccc-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCC-
Q 004503 127 QTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSP- 204 (748)
Q Consensus 127 ~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~- 204 (748)
...+| .+++|+||+|+|||||||++||+|.+..... ...+| . ++. ....+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~----------~~~~~-------------~-~~~----~~~~~~ 79 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE----------ASYDF-------------N-DND----PDPTPR 79 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc----------ccccc-------------c-CCC----CCCCCc
Confidence 34688 7899999999999999999999997542110 11111 1 110 00122
Q ss_pred -CCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCC
Q 004503 205 -IDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGG 283 (748)
Q Consensus 205 -~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~ 283 (748)
.|..||||||||||+|+..+. .| ..||||+|+|+.+|+++ .. .....+..++.++.+ .++|||||||.
T Consensus 80 ~~~~~gHGT~vAgiiag~~~~~---~~-----~~GvAp~a~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~ 148 (297)
T cd04059 80 YDDDNSHGTRCAGEIAAVGNNG---IC-----GVGVAPGAKLGGIRMLD-GD-VTDVVEAESLGLNPD-YIDIYSNSWGP 148 (297)
T ss_pred cccccccCcceeeEEEeecCCC---cc-----cccccccceEeEEEecC-Cc-cccHHHHHHHhcccC-CceEEECCCCC
Confidence 278899999999999986332 12 28999999999999987 33 344555666666654 46999999998
Q ss_pred CCCC----CchhHHHHHHHHhhh-----cCcEEEEecCCCCCCCCc----ccCCCCceEEEeccccccceeeeeeeCCCe
Q 004503 284 ATED----YASDTISVGAFHALK-----KGIVTVASAGNDGPKWGT----VSNHAPWLVTVAASGIDRQFKSKVKTGNGR 350 (748)
Q Consensus 284 ~~~~----~~~~~i~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 350 (748)
.... ........++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 149 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------------- 215 (297)
T cd04059 149 DDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------------- 215 (297)
T ss_pred CCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC-------------
Confidence 7221 112233333444443 699999999999983321 12346888999886543
Q ss_pred EEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecC
Q 004503 351 SVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQ 430 (748)
Q Consensus 351 ~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~ 430 (748)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCc----
Q 004503 431 FLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGID---- 506 (748)
Q Consensus 431 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~---- 506 (748)
+.++.||++|+.. ++.|||..
T Consensus 216 -----------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~ 240 (297)
T cd04059 216 -----------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNP 240 (297)
T ss_pred -----------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCC
Confidence 2467899999974 89999987
Q ss_pred ---EEecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 507 ---ILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 507 ---I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
|+++.... ....|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 241 ~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 241 EASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66655431 0156788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.8e-38 Score=329.19 Aligned_cols=242 Identities=27% Similarity=0.336 Sum_probs=186.1
Q ss_pred CCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhH
Q 004503 135 IESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHT 214 (748)
Q Consensus 135 ~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThV 214 (748)
+|+||+|+|||+||+++||+|.+...... .+. . .. ........|.++|||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~------------~~~------------~-~~---~~~~~~~~~~~~HGT~v 52 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS------------YYV------------A-VN---DAGYASNGDGDSHGTHV 52 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc------------ccc------------c-cc---cccCCCCCCCCChHHHH
Confidence 69999999999999999999985422110 000 0 00 00013456789999999
Q ss_pred HHhhcccccCCccccccccccccccccCceEEEEEEeecCC--CCCHHHHHHHHHHHHhCCccEEEEccCCCCCC-----
Q 004503 215 SSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSS--GCSDMDILAAFDAAIHDGVNVISISIGGATED----- 287 (748)
Q Consensus 215 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~--g~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~----- 287 (748)
||+|+|+.++ ..+.|+||+|+|+.+|+++ .. .+....+.++++++++.+++|||||||.....
T Consensus 53 agiiag~~~~---------~~~~GiAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~ 122 (267)
T cd04848 53 AGVIAAARDG---------GGMHGVAPDATLYSARASA-SAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVST 122 (267)
T ss_pred HHHHhcCcCC---------CCcccCCcCCEEEEEeccC-CCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccccccc
Confidence 9999998643 2238999999999999998 54 36678889999999999999999999998322
Q ss_pred -------CchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcc---------cCCCCceEEEeccccccceeeeeeeCCCeE
Q 004503 288 -------YASDTISVGAFHALKKGIVTVASAGNDGPKWGTV---------SNHAPWLVTVAASGIDRQFKSKVKTGNGRS 351 (748)
Q Consensus 288 -------~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 351 (748)
...+.+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------- 189 (267)
T cd04848 123 TYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------- 189 (267)
T ss_pred chhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------------
Confidence 1455666677788899999999999998654332 23457788888765441
Q ss_pred EeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCc
Q 004503 352 VSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQF 431 (748)
Q Consensus 352 ~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~ 431 (748)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecc--cCCCCCCCCCCCCCCCcEEcCCCcEEe
Q 004503 432 LDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIAS--FSSRGPNPGSKHLLKPDIAAPGIDILA 509 (748)
Q Consensus 432 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~--fSs~GP~~~~~~~lKPDI~APG~~I~s 509 (748)
.... ||++|+.. -.++++|||.+|++
T Consensus 190 -----------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~ 217 (267)
T cd04848 190 -----------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYS 217 (267)
T ss_pred -----------------------------------------------Ccccccccccchhh-----hhheeecCcCceee
Confidence 2233 48888653 23679999999999
Q ss_pred cccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCC
Q 004503 510 SYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 510 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 570 (748)
+.+.. ...|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 218 ~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 218 TDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred cccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 87631 167889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=337.82 Aligned_cols=372 Identities=25% Similarity=0.376 Sum_probs=274.6
Q ss_pred CCcEEEEEeCCCCCCchhhhHHHHHHHHHHhcCCCCC------CcccEEEEecceeeEEEEEeCH-----HHHHHhhcCC
Q 004503 33 QKNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHD------AKESIVYSYTESFNAFAAKLSN-----DEAQKLQRMD 101 (748)
Q Consensus 33 ~~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~v~~~y~~~~~g~s~~l~~-----~~~~~L~~~p 101 (748)
.+.+|||.|+.. .....|+..+++.++. .+- .+...--+|...|.-+-++-.. -++++|..+|
T Consensus 48 ve~EyIv~F~~y-----~~Ak~r~syi~skl~g-S~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp 121 (1033)
T KOG4266|consen 48 VESEYIVRFKQY-----KPAKDRRSYIESKLRG-SGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHP 121 (1033)
T ss_pred ecceeEEEeccc-----ccchHHHHHHHHHhhc-CCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCC
Confidence 378899999983 3345677788877764 121 1222334565666666665443 3589999999
Q ss_pred CeEEEEcCceeccccC------------------------------C---Cc--cccC--------Ccccccc-CCCCCC
Q 004503 102 RVLSVFPNRYHQLHTT------------------------------R---SW--DFIG--------LPQTARR-NLKIES 137 (748)
Q Consensus 102 ~V~~V~~~~~~~~~~~------------------------------~---s~--~~~~--------~~~~~~w-~~~~G~ 137 (748)
.|+.|.|.+.+..... . .| ++.. +..+.+| .|++|+
T Consensus 122 ~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa 201 (1033)
T KOG4266|consen 122 DVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGA 201 (1033)
T ss_pred CceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCC
Confidence 9999999776542100 0 01 1100 0113578 899999
Q ss_pred CcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHh
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSST 217 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi 217 (748)
+|+|||.|||+..+||-|+.- ....+++ +. ....|.-||||.|||+
T Consensus 202 ~VkvAiFDTGl~~~HPHFrnv-------------KERTNWT--------------NE-------~tLdD~lgHGTFVAGv 247 (1033)
T KOG4266|consen 202 KVKVAIFDTGLRADHPHFRNV-------------KERTNWT--------------NE-------DTLDDNLGHGTFVAGV 247 (1033)
T ss_pred ceEEEEeecccccCCccccch-------------hhhcCCc--------------Cc-------cccccCcccceeEeee
Confidence 999999999999999999731 1111221 11 3456789999999999
Q ss_pred hcccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHHhCCccEEEEccCCCCCCCchhHHHHH
Q 004503 218 LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVG 296 (748)
Q Consensus 218 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S~G~~~~~~~~~~i~~a 296 (748)
|||... ..|.||+++|+++||+. +.. .+.++.++|+.||+....||+|+|+|++ .+.+.|+-.-
T Consensus 248 ia~~~e------------c~gfa~d~e~~~frvft-~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeK 312 (1033)
T KOG4266|consen 248 IAGRNE------------CLGFASDTEIYAFRVFT-DAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEK 312 (1033)
T ss_pred eccchh------------hcccCCccceeEEEeec-cceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHH
Confidence 998742 27899999999999998 544 8899999999999999999999999997 4666677666
Q ss_pred HHHhhhcCcEEEEecCCCCCCCCcccCCCC--ceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEeccc
Q 004503 297 AFHALKKGIVTVASAGNDGPKWGTVSNHAP--WLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGAD 374 (748)
Q Consensus 297 ~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~ 374 (748)
+.......|++|.|+||+||-.++..+++. .||.||..+.
T Consensus 313 VwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf-------------------------------------- 354 (1033)
T KOG4266|consen 313 VWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF-------------------------------------- 354 (1033)
T ss_pred HHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc--------------------------------------
Confidence 667888999999999999998877776543 2333332211
Q ss_pred cccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHHHH
Q 004503 375 VAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNIT 454 (748)
Q Consensus 375 ~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 454 (748)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCC----CCCCCCCcEEcCCCcEEecccCCcccCCCCCCCccccce
Q 004503 455 DYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPG----SKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFT 530 (748)
Q Consensus 455 ~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 530 (748)
.+.+|.|||||-+.. ..+++||||++-|.+|...... .+..
T Consensus 355 ----------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr 399 (1033)
T KOG4266|consen 355 ----------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCR 399 (1033)
T ss_pred ----------------------cchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccch
Confidence 147899999997643 4689999999999998876554 6678
Q ss_pred eeccccchhhHHHHHHHHhHh----cCCCCCHHHHHHHHhccCCCCCCCCCCCCccCCCCCcCCccccCC------C--c
Q 004503 531 LMSGTSMACPHIAGVVAYVKS----FHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVS------P--G 598 (748)
Q Consensus 531 ~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~------~--g 598 (748)
.+||||.|+|.|||+++||.+ +.--++|+.+|++|+..|.+++... -+.||+|++|+.++++ | .
T Consensus 400 ~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N----MfEQGaGkldLL~syqiL~SYkP~as 475 (1033)
T KOG4266|consen 400 SLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN----MFEQGAGKLDLLESYQILKSYKPRAS 475 (1033)
T ss_pred hccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc----hhhccCcchhHHHHHHHHHhcCCCce
Confidence 999999999999999999976 2344699999999999999998763 5899999999988765 2 1
Q ss_pred e---eeeCCchhHHHhhhcCC
Q 004503 599 L---VYDMDDMSYIQFLCHEG 616 (748)
Q Consensus 599 l---v~d~~~~dy~~flc~~g 616 (748)
| ..|-+...|+--.|++.
T Consensus 476 l~PsylD~t~cpYmWPycsQP 496 (1033)
T KOG4266|consen 476 LFPSYLDYTDCPYMWPYCSQP 496 (1033)
T ss_pred ecchhcccccCcccCccccCc
Confidence 1 13555555666667765
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-33 Score=310.98 Aligned_cols=238 Identities=26% Similarity=0.342 Sum_probs=181.7
Q ss_pred CCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCC--CCHHHHHHHHHHHHhCCccEEEEccCCC-
Q 004503 208 DGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG--CSDMDILAAFDAAIHDGVNVISISIGGA- 284 (748)
Q Consensus 208 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~S~G~~- 284 (748)
.-|||||||||+|+...... ..||||+|+|+++++.+..-| -+...+.+|+..++++.+||||||+|-.
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 46999999999999754322 389999999999999773333 4566789999999999999999999988
Q ss_pred CCCCchhHHHHHHHHhhhcCcEEEEecCCCCCCCCcccCC---CCceEEEeccccccceeeeeeeCCCeEEeeeeeecCC
Q 004503 285 TEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNH---APWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFD 361 (748)
Q Consensus 285 ~~~~~~~~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 361 (748)
.-+.....++..-..+.++|+++|+||||+||...+++.+ ...+|.|||.-.....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm--------------------- 440 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM--------------------- 440 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH---------------------
Confidence 3333445555554455589999999999999998777653 4478888873221000
Q ss_pred CCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCccccccccccc
Q 004503 362 PKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAP 441 (748)
Q Consensus 362 ~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p 441 (748)
...|.+..
T Consensus 441 --~a~y~~~e---------------------------------------------------------------------- 448 (1304)
T KOG1114|consen 441 --QAEYSVRE---------------------------------------------------------------------- 448 (1304)
T ss_pred --Hhhhhhhc----------------------------------------------------------------------
Confidence 00000000
Q ss_pred EEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCC
Q 004503 442 GTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLK 521 (748)
Q Consensus 442 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 521 (748)
.-......||||||+. ||-+-+.|+|||+.|.+-=.-.
T Consensus 449 ---------------------------------~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t------- 486 (1304)
T KOG1114|consen 449 ---------------------------------PVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT------- 486 (1304)
T ss_pred ---------------------------------cCCCCccccccCCCCc--CCCcceEEecCCccccCCchhh-------
Confidence 0012467899999997 9999999999999986632111
Q ss_pred CCCccccceeeccccchhhHHHHHHHHhHh----cCCCCCHHHHHHHHhccCCCCCCCCCCCCccCCCCCcCCccccCC
Q 004503 522 GDTQYSKFTLMSGTSMACPHIAGVVAYVKS----FHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVS 596 (748)
Q Consensus 522 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 596 (748)
-..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||+++++. .+|.+|.|++++.+|.+
T Consensus 487 ----lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 487 ----LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 14567999999999999999999865 578899999999999999999887 47999999999999966
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-33 Score=288.94 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=143.0
Q ss_pred CCCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHH--HhCCccEEEEc
Q 004503 203 SPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAA--IHDGVNVISIS 280 (748)
Q Consensus 203 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--~~~gvdVIn~S 280 (748)
...|.+||||||||||||. .|++|+++|+..++.. . ..+.+.++++|+ .+.+++|||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-~---~~~~~~~~i~~~~~~~~gv~VINmS 92 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-K---SNNGQWQECLEAQQNGNNVKIINHS 92 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-C---CCCccHHHHHHHHHhcCCceEEEeC
Confidence 3458999999999999997 4567999998766532 1 233466778888 56799999999
Q ss_pred cCCCCCCC------chhHHHHHHHHhhhc-CcEEEEecCCCCCCCC-----cccCCCCceEEEeccccccceeeeeeeCC
Q 004503 281 IGGATEDY------ASDTISVGAFHALKK-GIVTVASAGNDGPKWG-----TVSNHAPWLVTVAASGIDRQFKSKVKTGN 348 (748)
Q Consensus 281 ~G~~~~~~------~~~~i~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 348 (748)
||...... ..+.+..++..+.++ |+++|+||||+|.... ..+..++++|+|||++.....
T Consensus 93 ~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~-------- 164 (247)
T cd07488 93 YGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR-------- 164 (247)
T ss_pred CccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc--------
Confidence 99873221 223455666666665 9999999999998532 234457889999987644100
Q ss_pred CeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEee
Q 004503 349 GRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGS 428 (748)
Q Consensus 349 g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~ 428 (748)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEE
Q 004503 429 EQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDIL 508 (748)
Q Consensus 429 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~ 508 (748)
...+.||++|.....++..||||+|||++|+
T Consensus 165 -------------------------------------------------~~~s~~sn~~~~~~~~~~~~~di~APG~~i~ 195 (247)
T cd07488 165 -------------------------------------------------FFASDVSNAGSEINSYGRRKVLIVAPGSNYN 195 (247)
T ss_pred -------------------------------------------------ceecccccccCCCCCCCCceeEEEEeeeeEE
Confidence 0234566654332246778999999999999
Q ss_pred ecccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCCCCCH------HHHHHHHhccC
Q 004503 509 ASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSP------AAIKSAIMTTA 569 (748)
Q Consensus 509 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp------~~ik~~L~~TA 569 (748)
+ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|+
T Consensus 196 s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 196 L--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred C--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 8 22 56889999999999999999999999887764 45677776653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=3.2e-31 Score=272.88 Aligned_cols=234 Identities=37% Similarity=0.506 Sum_probs=177.1
Q ss_pred cEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCCCCCCCchhHHHhh
Q 004503 139 IVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTL 218 (748)
Q Consensus 139 V~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgii 218 (748)
|+|+|||+||+++||+|... ......+.++. .. ........+..+||||||++|
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~~~~~~~--------------~~---~~~~~~~~~~~~HGt~va~~i 54 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGDGGNDDD--------------DN---ENGPTDPDDGNGHGTHVAGII 54 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCcccccccc--------------cC---cCCCCCCCCCCCcHHHHHHHH
Confidence 68999999999999987210 00111111111 00 000124567899999999999
Q ss_pred cccccCCccccccccccccccccCceEEEEEEeecCCC-CCHHHHHHHHHHHH-hCCccEEEEccCCCCCCCchhHHHHH
Q 004503 219 AGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAI-HDGVNVISISIGGATEDYASDTISVG 296 (748)
Q Consensus 219 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~-~~gvdVIn~S~G~~~~~~~~~~i~~a 296 (748)
++...... ..|+||+++|+.+|+.. ..+ .....+++++++++ +.+++|||||||..... ....+...
T Consensus 55 ~~~~~~~~---------~~g~a~~a~i~~~~~~~-~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~ 123 (241)
T cd00306 55 AASANNGG---------GVGVAPGAKLIPVKVLD-GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEA 123 (241)
T ss_pred hcCCCCCC---------CEEeCCCCEEEEEEEec-CCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHH
Confidence 99864321 17999999999999988 444 67888999999999 89999999999998432 34455666
Q ss_pred HHHhhhc-CcEEEEecCCCCCCCC---cccCCCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCeeeeEec
Q 004503 297 AFHALKK-GIVTVASAGNDGPKWG---TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSG 372 (748)
Q Consensus 297 ~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~ 372 (748)
+..+.++ |+++|+||||++.... ..+...|++|+||+.+.+.
T Consensus 124 ~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------------- 169 (241)
T cd00306 124 IDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------------- 169 (241)
T ss_pred HHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------------
Confidence 6677777 9999999999998775 4677889999999876541
Q ss_pred cccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEcccchHH
Q 004503 373 ADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDN 452 (748)
Q Consensus 373 ~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~ 452 (748)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCceEEEEeceeeeecCCeec-ccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCcccccee
Q 004503 453 ITDYIHSTRSPSAVIYKSQEVKVRAPFIA-SFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTL 531 (748)
Q Consensus 453 l~~~~~~~~~~~~~i~~~~~~~~~~~~~a-~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 531 (748)
... .++++|+ |||+.|||.++...... ....+..
T Consensus 170 --------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~ 204 (241)
T cd00306 170 --------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYAT 204 (241)
T ss_pred --------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEe
Confidence 112 4455554 48999999999875111 1268899
Q ss_pred eccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhcc
Q 004503 532 MSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTT 568 (748)
Q Consensus 532 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 568 (748)
++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 205 ~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 205 LSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred eccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-23 Score=240.10 Aligned_cols=268 Identities=33% Similarity=0.464 Sum_probs=194.6
Q ss_pred cccc-C--CCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCC-C
Q 004503 128 TARR-N--LKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDIL-S 203 (748)
Q Consensus 128 ~~~w-~--~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~-~ 203 (748)
...| . +.+|+||+|+|||+||+..||+|.+.... +. +|. +.. .. .
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~------------~~-------------~~~-~~~-----~~~~ 178 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA------------GG-------------DFV-DGD-----PEPP 178 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc------------cc-------------ccc-cCC-----CCCC
Confidence 3566 3 89999999999999999999999754210 01 122 110 01 2
Q ss_pred CCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCC-C-CCHHHHHHHHHHHHhCC--ccEEEE
Q 004503 204 PIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSS-G-CSDMDILAAFDAAIHDG--VNVISI 279 (748)
Q Consensus 204 ~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g-~~~~~i~~ai~~a~~~g--vdVIn~ 279 (748)
..|.++|||||++++++....+ .....|+||+++++.+|++. .. + ...++++++|+++++.+ +++|||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLG-SGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEecc-CCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 5689999999999999842111 11138999999999999998 44 4 67788899999999999 999999
Q ss_pred ccCCCCCCCchhHHHHHHHHhhhcC-cEEEEecCCCCCCCCc----ccCCC--CceEEEeccccccceeeeeeeCCCeEE
Q 004503 280 SIGGATEDYASDTISVGAFHALKKG-IVTVASAGNDGPKWGT----VSNHA--PWLVTVAASGIDRQFKSKVKTGNGRSV 352 (748)
Q Consensus 280 S~G~~~~~~~~~~i~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (748)
|+|..........+..++..++..| +++|+++||.|..... .+... +.+++|++.+.
T Consensus 251 s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------- 314 (508)
T COG1404 251 SLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------- 314 (508)
T ss_pred cCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------------
Confidence 9998511223345555556777777 9999999999876521 11111 24555554322
Q ss_pred eeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcc
Q 004503 353 SGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFL 432 (748)
Q Consensus 353 ~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 432 (748)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEe---
Q 004503 433 DVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILA--- 509 (748)
Q Consensus 433 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~s--- 509 (748)
.+.++.||++|+.. ..+++|||.+|.+
T Consensus 315 --------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~ 344 (508)
T COG1404 315 --------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSA 344 (508)
T ss_pred --------------------------------------------CCccccccccCCCC------CcceeCCCcccccccc
Confidence 02578899999751 3699999999988
Q ss_pred --cccCCcccCCCCCCCccccceeeccccchhhHHHHHHHHhHhcCC-CCCHHHHHHHHhccCCC--CCCCCCCCCccCC
Q 004503 510 --SYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHP-SWSPAAIKSAIMTTAKP--MSQRVNNEAEFAY 584 (748)
Q Consensus 510 --a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~ik~~L~~TA~~--~~~~~~~~~~~~~ 584 (748)
.+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ....+
T Consensus 345 ~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 408 (508)
T COG1404 345 VNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG-----VDNLV 408 (508)
T ss_pred ceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc-----ccccc
Confidence 444310 2499999999999999999999999999 89999999999998884 222 25567
Q ss_pred CCCcCCccccCC
Q 004503 585 GAGQVNPQKAVS 596 (748)
Q Consensus 585 G~G~vn~~~Al~ 596 (748)
+.|..+...+..
T Consensus 409 ~~~~~~~~~~~~ 420 (508)
T COG1404 409 GGGLANLDAAAT 420 (508)
T ss_pred ccCccccccccc
Confidence 777776665544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.2e-24 Score=215.23 Aligned_cols=333 Identities=18% Similarity=0.237 Sum_probs=203.8
Q ss_pred HHHHHhhcCCCeEEEEcCceec------------------cccCCCccccCCc-----------ccccc-CCCCCCCcEE
Q 004503 92 DEAQKLQRMDRVLSVFPNRYHQ------------------LHTTRSWDFIGLP-----------QTARR-NLKIESDIVV 141 (748)
Q Consensus 92 ~~~~~L~~~p~V~~V~~~~~~~------------------~~~~~s~~~~~~~-----------~~~~w-~~~~G~gV~V 141 (748)
..-++|.++|.|+.+....-+. +.-+.+|-+.... ...+| .+++|++|++
T Consensus 86 ~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgknvtt 165 (629)
T KOG3526|consen 86 GHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGKNVTT 165 (629)
T ss_pred chhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccCCCceE
Confidence 3456778888887665433221 1123445443322 24688 9999999999
Q ss_pred EEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCCCCC-C-CCCCchhHHHhhc
Q 004503 142 GLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPI-D-VDGHGTHTSSTLA 219 (748)
Q Consensus 142 aVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~~~~-D-~~gHGThVAgiia 219 (748)
+|+|.||||-||+++.+ | ..+..++|. .|+ .+ ++..-. | .+.|||.|||-++
T Consensus 166 aimddgvdymhpdlk~n--------y--naeasydfs-snd-----------pf----pyprytddwfnshgtrcagev~ 219 (629)
T KOG3526|consen 166 AIMDDGVDYMHPDLKSN--------Y--NAEASYDFS-SND-----------PF----PYPRYTDDWFNSHGTRCAGEVV 219 (629)
T ss_pred EeecCCchhcCcchhcc--------c--Cceeecccc-cCC-----------CC----CCCcccchhhhccCccccceee
Confidence 99999999999999732 1 122233333 111 11 111112 2 5899999999998
Q ss_pred ccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHh-CCccEEEEccCCCCCC-CchhH---HH
Q 004503 220 GNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIH-DGVNVISISIGGATED-YASDT---IS 294 (748)
Q Consensus 220 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~S~G~~~~~-~~~~~---i~ 294 (748)
+...++.. | .|||.+.++..+|+++ ..+..|+++|-..-.+ ...+|.+-|||..... ..+.| .-
T Consensus 220 aardngic--g------vgvaydskvagirmld---qpymtdlieansmghep~kihiysaswgptddgktvdgprnatm 288 (629)
T KOG3526|consen 220 AARDNGIC--G------VGVAYDSKVAGIRMLD---QPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATM 288 (629)
T ss_pred eeccCCce--e------eeeeeccccceeeecC---CchhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHH
Confidence 87765432 2 6999999999999987 3355566655333222 3578999999987222 22222 22
Q ss_pred HHHHHhhh-----cCcEEEEecCCCCCCCCcccC---CCCceEEEeccccccceeeeeeeCCCeEEeeeeeecCCCCCCe
Q 004503 295 VGAFHALK-----KGIVTVASAGNDGPKWGTVSN---HAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKF 366 (748)
Q Consensus 295 ~a~~~a~~-----~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 366 (748)
.|+-+-++ .|-+.|.|.|..|.+...-.. .+-|.|++-+.-.| |+
T Consensus 289 raiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaind-----------g~---------------- 341 (629)
T KOG3526|consen 289 RAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIND-----------GE---------------- 341 (629)
T ss_pred HHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcC-----------Cc----------------
Confidence 22222222 567999999988865422211 24455655443222 00
Q ss_pred eeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCchhhhhhhcCceEEEEeecCcccccccccccEEEEc
Q 004503 367 YPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVN 446 (748)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 446 (748)
...+++.|..
T Consensus 342 --------------nahydescss-------------------------------------------------------- 351 (629)
T KOG3526|consen 342 --------------NAHYDESCSS-------------------------------------------------------- 351 (629)
T ss_pred --------------cccccchhhH--------------------------------------------------------
Confidence 0111233431
Q ss_pred ccchHHHHHHHhcCCCceEEEEeceeeeecCCeecccCCCCCCCCCCCCCCCcEEcCCCcEEecccCCcccCCCCCCCcc
Q 004503 447 VTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQY 526 (748)
Q Consensus 447 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 526 (748)
...+.||+-|.++ +- |+.-.--| .
T Consensus 352 -------------------------------tlastfsng~rnp--------et---gvattdly--------------g 375 (629)
T KOG3526|consen 352 -------------------------------TLASTFSNGGRNP--------ET---GVATTDLY--------------G 375 (629)
T ss_pred -------------------------------HHHHHhhcCCcCC--------Cc---ceeeeccc--------------c
Confidence 0245688877653 21 21111111 1
Q ss_pred ccceeeccccchhhHHHHHHHHhHhcCCCCCHHHHHHHHhccCCCCCCCCCCC------------CccCCCCCcCCcccc
Q 004503 527 SKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNE------------AEFAYGAGQVNPQKA 594 (748)
Q Consensus 527 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~------------~~~~~G~G~vn~~~A 594 (748)
......||||.|+|-.||+-||.++++|.|+..+++.+-.-|..+..-....- .+..||+|.+|+.+.
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 44567899999999999999999999999999999998888887643221110 356799999999887
Q ss_pred CCCceeeeCCchhHHHhhhcCCC
Q 004503 595 VSPGLVYDMDDMSYIQFLCHEGY 617 (748)
Q Consensus 595 l~~glv~d~~~~dy~~flc~~g~ 617 (748)
+.-..-+...+. .|.|.-|.
T Consensus 456 v~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 456 VMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred HHHHHHhccCCC---ceeecccc
Confidence 665555555555 35787764
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=3.1e-17 Score=179.45 Aligned_cols=101 Identities=24% Similarity=0.272 Sum_probs=81.7
Q ss_pred ccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhC---CccEEEEccCCCCCC---CchhHHHHHHHHhhhcCcEE
Q 004503 234 GAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHD---GVNVISISIGGATED---YASDTISVGAFHALKKGIVT 307 (748)
Q Consensus 234 g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---gvdVIn~S~G~~~~~---~~~~~i~~a~~~a~~~Gi~v 307 (748)
..+.||||+|+|..|++++ . ...+++.++.+++++ +++|||+|||..... .+.+.+..++.+|..+||+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~-~---~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 81 EYAGAIAPGANITLYFAPG-T---VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHHhccCCCeEEEEEECC-c---CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 3458999999999999987 2 245677888888887 999999999998322 23466777788899999999
Q ss_pred EEecCCCCCCCC-----------cccCCCCceEEEecccccc
Q 004503 308 VASAGNDGPKWG-----------TVSNHAPWLVTVAASGIDR 338 (748)
Q Consensus 308 V~AAGN~G~~~~-----------~~~~~~p~vitVgA~~~~~ 338 (748)
|+||||+|.... ..+...|||++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999997653 2466789999999988663
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.04 E-value=1e-09 Score=104.06 Aligned_cols=110 Identities=25% Similarity=0.284 Sum_probs=84.1
Q ss_pred CCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc----
Q 004503 363 KEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV---- 434 (748)
Q Consensus 363 ~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~---- 434 (748)
.....+++|.+. |....+...+++|||+|| +|+.+ +..+++++||.|+|++++.....
T Consensus 24 ~~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~-~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~ 89 (143)
T cd02133 24 LGKTYELVDAGL-------------GTPEDFEGKDVKGKIALI-QRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTL 89 (143)
T ss_pred CCcEEEEEEccC-------------CchhccCCCCccceEEEE-ECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccC
Confidence 345778888654 445556667899999999 55554 44588999999999999876543
Q ss_pred cccccccEEEEcccchHHHHHHHhcCCCceEEEEeceeee-ecCCeecccCCCCCCC
Q 004503 435 AQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVK-VRAPFIASFSSRGPNP 490 (748)
Q Consensus 435 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~-~~~~~~a~fSs~GP~~ 490 (748)
.....+|++.|+.++|+.|++|+++ ++++.+..+.. .+++.++.||||||+.
T Consensus 90 ~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~~~p~va~fSsrgp~g 142 (143)
T cd02133 90 GEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKEKATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccccccCCccccccCcCCCC
Confidence 1224689999999999999999988 55565555544 7778899999999973
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.03 E-value=1.7e-09 Score=100.33 Aligned_cols=116 Identities=34% Similarity=0.569 Sum_probs=90.3
Q ss_pred eeeCCCeEEeeeeeecCCCCCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCc-----hhhhhhh
Q 004503 344 VKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWG-----ADSVIKG 418 (748)
Q Consensus 344 ~~~~~g~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~-----~~~~~~~ 418 (748)
++||||+++.|+++++... ..+++++..... .......|.+..++..+++|||||| +++.+ +..++++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc-~~~~~~~~~~k~~~~~~ 74 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLC-DRGGNTSRVAKGDAVKA 74 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC----CCCccccCCCCCCChhhccccEEEE-eCCCCccHHHHHHHHHH
Confidence 6799999999999997654 467777633311 1233478998888889999999999 55433 3457899
Q ss_pred cCceEEEEeecCcccc---cccccccEEEEcccchHHHHHHHhcCCCceEE
Q 004503 419 IGGVGIIVGSEQFLDV---AQIYMAPGTMVNVTDGDNITDYIHSTRSPSAV 466 (748)
Q Consensus 419 ~Ga~g~i~~~~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 466 (748)
+||.|+|++++..+.. .....+|++.|+.++|+.|++|++++.+++++
T Consensus 75 ~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 75 AGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999999876443 23467999999999999999999998877664
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.81 E-value=1.3e-08 Score=86.72 Aligned_cols=79 Identities=30% Similarity=0.464 Sum_probs=55.2
Q ss_pred EEEEEeCCCCCCchhhhHHHHHHHHHHhcCC---CCCCcccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCcee
Q 004503 36 FYVAYLGDQPVDEDLAVQTHIQILASVKGGS---YHDAKESIVYSYTESFNAFAAKLSNDEAQKLQRMDRVLSVFPNRYH 112 (748)
Q Consensus 36 ~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~ 112 (748)
+|||.|++.... ....+.|.+++.+++.+. ......++.+.|+..|+||+++++++++++|+++|+|++|+||..+
T Consensus 1 ~YIV~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v 79 (82)
T PF05922_consen 1 RYIVVFKDDASA-ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVV 79 (82)
T ss_dssp EEEEEE-TTSTH-HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEE
T ss_pred CEEEEECCCCCc-chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceE
Confidence 699999995321 122455666655432210 1235788999998899999999999999999999999999999998
Q ss_pred ccc
Q 004503 113 QLH 115 (748)
Q Consensus 113 ~~~ 115 (748)
++|
T Consensus 80 ~l~ 82 (82)
T PF05922_consen 80 SLH 82 (82)
T ss_dssp EE-
T ss_pred ecC
Confidence 864
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.2e-07 Score=100.77 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCcccccc-CCCCCCCcEEEEEecCCCCCCcCCCCCCCCCCCCCcCccccccCCCccCCcceEeeeecccCCCCCCCCCC
Q 004503 124 GLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDIL 202 (748)
Q Consensus 124 ~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~~n~kiig~~~~~~~~~~~~~~~~ 202 (748)
.+.....| .+++|+++.|+|.|+|+...||+..+. ....+..++..++ ..+..-.
T Consensus 19 d~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-----------------------~~~~~s~d~~~~~-~~p~~~~ 74 (431)
T KOG3525|consen 19 DLNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-----------------------YDPLGSYDVNRHD-NDPEPRC 74 (431)
T ss_pred cceeeeccccCCCCCceEEEEeeccccccCcccccc-----------------------cCcceeEeeecCC-CCccccc
Confidence 33445788 899999999999999999999999732 1122223333121 1111122
Q ss_pred CCCCCCCCchhHHHhhcccccCCccccccccccccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHh-CCccEEEEcc
Q 004503 203 SPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIH-DGVNVISISI 281 (748)
Q Consensus 203 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~S~ 281 (748)
+......|||-||+-.+...++..- ..|+++++++..++++.. ...+...+...... .-+++-+.||
T Consensus 75 ~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~----~v~~~~~~~~~~~~~~~~di~scsw 142 (431)
T KOG3525|consen 75 DGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG----CVSDAVEAPSLGFGPCHIDIYSCSW 142 (431)
T ss_pred CCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee----ecccceecccccCCCCCceeecCcC
Confidence 3334689999999999988633211 279999999999999871 11132233332222 3478999999
Q ss_pred CCCCCC-Cch---hHHHHHHHHh-----hhcCcEEEEecCCCCCCC
Q 004503 282 GGATED-YAS---DTISVGAFHA-----LKKGIVTVASAGNDGPKW 318 (748)
Q Consensus 282 G~~~~~-~~~---~~i~~a~~~a-----~~~Gi~vV~AAGN~G~~~ 318 (748)
|..... ..+ .....+.... ..+|-+.+++.||.|...
T Consensus 143 ~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 143 GPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 987211 111 1222222232 357889999999988654
No 48
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.36 E-value=3.4e-06 Score=76.41 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=57.3
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeC--------CCCe-----------EEEEecCeeeeccCCcEEEEEEEEEeecC---C
Q 004503 662 TAIFRRRVTNVGPRLSIYNATIKA--------PKGV-----------NITVKPMSLSFSRTSHKRSFSVVVKAKPM---S 719 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v~~--------~~g~-----------~v~v~p~~l~~~~~g~~~~~~vt~~~~~~---~ 719 (748)
..+++.+|+|.|+.+.+|+++..+ ..|. .+...|.+|++ ++|++++|+|+|+.+.. .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCcc
Confidence 578899999999999999998752 1111 57777899999 68999999999998652 3
Q ss_pred CCCeEEEEEEEEC-CCc-EEEeEEE
Q 004503 720 STQVLSGSLEWKS-PRH-VVRSPIV 742 (748)
Q Consensus 720 ~~~~~~G~~~~~~-~~~-~vr~P~~ 742 (748)
...+++|+|.+++ ..+ .+++||+
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 3679999999997 455 8999996
No 49
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.3e-06 Score=97.88 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=57.9
Q ss_pred ccccccCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCc-cEEEEccCCC---CCCC--chhHHHHHHHHhhhcCcEEEE
Q 004503 236 ARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGV-NVISISIGGA---TEDY--ASDTISVGAFHALKKGIVTVA 309 (748)
Q Consensus 236 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gv-dVIn~S~G~~---~~~~--~~~~i~~a~~~a~~~Gi~vV~ 309 (748)
..-+||+|+|..|-+-. + .......|+.+-...-+ -+|-.||+.. .... .-+.+......|..+||.+++
T Consensus 288 s~A~AP~A~I~lvvap~---~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN---P-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcCC---C-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 46689999999986622 1 22222223332222111 3334566654 2122 334555556678899999999
Q ss_pred ecCCCCCCCCc--------ccCCCCceEEEec
Q 004503 310 SAGNDGPKWGT--------VSNHAPWLVTVAA 333 (748)
Q Consensus 310 AAGN~G~~~~~--------~~~~~p~vitVgA 333 (748)
|+|.+|....+ .++.+|++++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876543 3457899999997
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.23 E-value=3.1e-06 Score=77.96 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=64.9
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc------c--ccccccEEEEcccchHH
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV------A--QIYMAPGTMVNVTDGDN 452 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~------~--~~~~~p~~~i~~~~g~~ 452 (748)
...|.+..+...+++|||+|| +|+.+ +..+++++||.++|++|+..... . ....+|+++|+.++|+.
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv-~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~ 107 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLV-DRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAA 107 (122)
T ss_pred ccCCCccccCCCCcCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHH
Confidence 367998888888999999999 66554 44589999999999999876321 1 34569999999999999
Q ss_pred HHHHHhcCCCceEE
Q 004503 453 ITDYIHSTRSPSAV 466 (748)
Q Consensus 453 l~~~~~~~~~~~~~ 466 (748)
|++++.++.+.+++
T Consensus 108 l~~~l~~g~~v~~~ 121 (122)
T cd04816 108 LRRRLGAGETLELD 121 (122)
T ss_pred HHHHHcCCCEEEEe
Confidence 99999888765543
No 51
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.16 E-value=1.4e-05 Score=73.53 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=62.0
Q ss_pred CccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecC-cccc------cccccccEEEEcccchHHHH
Q 004503 386 RFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQ-FLDV------AQIYMAPGTMVNVTDGDNIT 454 (748)
Q Consensus 386 ~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~-~~~~------~~~~~~p~~~i~~~~g~~l~ 454 (748)
..|.+..+ +.+++|||+|+ +|+.| +..+++++||.++|++|+. ...+ .....+|++.|+.++|+.|+
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv-~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 32 LGCDAADY-PASVAGNIALI-ERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCcccC-CcCCCCEEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 46886555 35799999999 66655 4568999999999999987 3322 23456999999999999999
Q ss_pred HHHhcCCCceEE
Q 004503 455 DYIHSTRSPSAV 466 (748)
Q Consensus 455 ~~~~~~~~~~~~ 466 (748)
+.+.++.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999998876654
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.12 E-value=7.8e-06 Score=74.81 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=62.8
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc--c-----ccccccEEEEcccchHHH
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV--A-----QIYMAPGTMVNVTDGDNI 453 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~--~-----~~~~~p~~~i~~~~g~~l 453 (748)
...|.+.... .+++|||+|| +|+.+ +..+++++||.|+|++++..... . ....+|+++|+.++|+.|
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~-~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALI-DRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEE-ECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 4679888774 4599999999 66544 44588999999999998876421 1 235799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004503 454 TDYIHSTRSPSAV 466 (748)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (748)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988765543
No 53
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.01 E-value=1.9e-05 Score=73.94 Aligned_cols=82 Identities=12% Similarity=0.001 Sum_probs=65.8
Q ss_pred cCccCCCCC--CCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCc-c--cc----cccccccEEEEcccchH
Q 004503 385 ARFCFDDSL--DPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQF-L--DV----AQIYMAPGTMVNVTDGD 451 (748)
Q Consensus 385 ~~~C~~~~~--~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~-~--~~----~~~~~~p~~~i~~~~g~ 451 (748)
...|.+... ++.++.|+|+|+ +|+.| +..+++++||.++|++|+.. . .+ .....+|+++|+..+|+
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV-~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALI-QRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 467998776 567899999999 66655 55699999999999999876 2 11 22346899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 004503 452 NITDYIHSTRSPSAVI 467 (748)
Q Consensus 452 ~l~~~~~~~~~~~~~i 467 (748)
.|++++.++.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999988766543
No 54
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.00 E-value=1.9e-05 Score=71.65 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=61.5
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc-c------cccccccEEEEcccchHHH
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD-V------AQIYMAPGTMVNVTDGDNI 453 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~-~------~~~~~~p~~~i~~~~g~~l 453 (748)
...|.+..+.+.+++|||+|+ +||.| +..+++++||.++|++|+.... . .....||+++|+.++|+.|
T Consensus 30 ~~gC~~~~~~~~~l~gkIaLV-~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 30 SVLCSASDVPPGGLKGKAVVV-MRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred cCCCCccccCccccCCeEEEE-ECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 467999888888899999999 66655 5669999999999999987631 1 2446789999999999999
Q ss_pred HHHHhcC
Q 004503 454 TDYIHST 460 (748)
Q Consensus 454 ~~~~~~~ 460 (748)
++.+.+.
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 9988743
No 55
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.97 E-value=5.2e-06 Score=73.48 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=56.1
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcc-------cccccccccEEEEcccchHHH
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFL-------DVAQIYMAPGTMVNVTDGDNI 453 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~-------~~~~~~~~p~~~i~~~~g~~l 453 (748)
...|.+......+++|||||| +|+.+ +..+++++||.|+|+++.... .......||+++|+.++|+.|
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv-~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLV-ERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEE-ESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred cccccccccCCccccceEEEE-ecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 355777888889999999999 77655 446899999999999992111 115667899999999999999
Q ss_pred HHHH
Q 004503 454 TDYI 457 (748)
Q Consensus 454 ~~~~ 457 (748)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9986
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.97 E-value=1.8e-05 Score=73.02 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=62.9
Q ss_pred cCccCCCC--CCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc--c--c-----ccccccEEEEcccc
Q 004503 385 ARFCFDDS--LDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD--V--A-----QIYMAPGTMVNVTD 449 (748)
Q Consensus 385 ~~~C~~~~--~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~--~--~-----~~~~~p~~~i~~~~ 449 (748)
...|.+.. +...+++|||+|| +|+.+ +..+++++||.|+|++++.... . . ....+|++.|+.++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~-~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLV-RRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred eEEEecCcccccCCCccceEEEE-ECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 35688776 6778899999999 66544 4458899999999999987532 1 1 34579999999999
Q ss_pred hHHHHHHHhcCCCceE
Q 004503 450 GDNITDYIHSTRSPSA 465 (748)
Q Consensus 450 g~~l~~~~~~~~~~~~ 465 (748)
|+.|++|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998765544
No 57
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.87 E-value=4.8e-05 Score=69.32 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc----c-------cccccccEEEEcccc
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD----V-------AQIYMAPGTMVNVTD 449 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~----~-------~~~~~~p~~~i~~~~ 449 (748)
...|.+.. ...+++|||+|+ +|+.| +..+++++||.++|++|+.... + .....||+++|+.++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv-~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALI-ERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 35698644 356799999999 66665 5568999999999999976431 1 123579999999999
Q ss_pred hHHHHHHHhcCCCceEEEE
Q 004503 450 GDNITDYIHSTRSPSAVIY 468 (748)
Q Consensus 450 g~~l~~~~~~~~~~~~~i~ 468 (748)
|+.|++.+.++..+++.|.
T Consensus 99 G~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 99 GYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHHcCCceEEeee
Confidence 9999999999988777653
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.87 E-value=6e-05 Score=70.95 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=60.8
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc---------cccccccEEEEcccchH
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV---------AQIYMAPGTMVNVTDGD 451 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~---------~~~~~~p~~~i~~~~g~ 451 (748)
.+.|.+.. .+++|||+|+ +|+.| +..+++++||.++|++|+..... .....||+++|+..+|+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV-~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 48 LDCCSPST---SKLSGSIALV-ERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred ccccCCCC---cccCCeEEEE-ECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 36798764 3799999999 66655 55699999999999999765321 11357999999999999
Q ss_pred HHHHHHhcCCCceE
Q 004503 452 NITDYIHSTRSPSA 465 (748)
Q Consensus 452 ~l~~~~~~~~~~~~ 465 (748)
.|++++.++...++
T Consensus 124 ~L~~~l~~g~~Vtv 137 (139)
T cd02132 124 ALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999998876554
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.83 E-value=5.2e-05 Score=70.25 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=61.9
Q ss_pred ccCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc----cccccccEEEEcccchHHHHH
Q 004503 384 SARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV----AQIYMAPGTMVNVTDGDNITD 455 (748)
Q Consensus 384 ~~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~ 455 (748)
....|.+...+..+++|||+|+ +|+.| +..+++++||.++|++|+.++.+ .+...+|.+.+ .++|+.|++
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv-~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLV-RRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CcccCcCCCcccccccCeEEEE-ECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 3467998766667899999999 66655 55699999999999999876433 33344666666 999999999
Q ss_pred HHhcCCCceEE
Q 004503 456 YIHSTRSPSAV 466 (748)
Q Consensus 456 ~~~~~~~~~~~ 466 (748)
.+.++...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99888765543
No 60
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.81 E-value=5.3e-05 Score=70.03 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=61.3
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc------c------c---ccccccEEEE
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD------V------A---QIYMAPGTMV 445 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~------~------~---~~~~~p~~~i 445 (748)
...|.+... +.+++|||+|+ +|+.| +..+++++||.++|++|+..+. + . ....||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv-~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIM-ERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEE-ECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 367986554 55799999999 66655 4568999999999999876532 1 1 2457999999
Q ss_pred cccchHHHHHHHhcCCCceE
Q 004503 446 NVTDGDNITDYIHSTRSPSA 465 (748)
Q Consensus 446 ~~~~g~~l~~~~~~~~~~~~ 465 (748)
+..+|+.|++++..+...++
T Consensus 105 ~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EHHHHHHHHHHHHhCCceEE
Confidence 99999999999988766544
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.70 E-value=0.00018 Score=66.44 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=61.8
Q ss_pred cCccCCCCCC--CC----CccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc--------------cccccc
Q 004503 385 ARFCFDDSLD--PK----KVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV--------------AQIYMA 440 (748)
Q Consensus 385 ~~~C~~~~~~--~~----~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~--------------~~~~~~ 440 (748)
...|.+.... +. ...++|+|+ +|+.| +..+++++||.++|++|+..+.+ .....|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv-~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLL-DRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEE-ECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 3568865443 22 377899999 67666 55689999999999999876532 123469
Q ss_pred cEEEEcccchHHHHHHHhcCCCceEE
Q 004503 441 PGTMVNVTDGDNITDYIHSTRSPSAV 466 (748)
Q Consensus 441 p~~~i~~~~g~~l~~~~~~~~~~~~~ 466 (748)
|+++|+.++|+.|++.+.++...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999988766554
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.58 E-value=0.00016 Score=65.84 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=58.0
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc-c--------cccccccEEEEcccchH
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD-V--------AQIYMAPGTMVNVTDGD 451 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~-~--------~~~~~~p~~~i~~~~g~ 451 (748)
...|.+. +..+++|||+|+ +|+.| +..+++++||.++|++|+..+. + .....+|+++|+.++++
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV-~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALV-LRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 4679766 567899999999 67655 5568999999999999876632 1 23357999999999999
Q ss_pred HHHHHHhcC
Q 004503 452 NITDYIHST 460 (748)
Q Consensus 452 ~l~~~~~~~ 460 (748)
+|..++...
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999887654
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.51 E-value=0.0002 Score=66.86 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=52.3
Q ss_pred CCCCCccceEEEEecCCCch---------hhhhhhcCceEEEEeecC--cccc----c---ccccccEEEEcccchHHHH
Q 004503 393 LDPKKVKGKLVYCKLGTWGA---------DSVIKGIGGVGIIVGSEQ--FLDV----A---QIYMAPGTMVNVTDGDNIT 454 (748)
Q Consensus 393 ~~~~~~~gkivl~~~~~~~~---------~~~~~~~Ga~g~i~~~~~--~~~~----~---~~~~~p~~~i~~~~g~~l~ 454 (748)
+...+++|||+|+ +|+.+. ..+++++||+++|+||+. .+.+ . ....||++.|++++|+.|+
T Consensus 50 ~~~~d~~GkIaLI-~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 50 YICGGMAGKICLI-ERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred ccCCCcCccEEEE-ECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 3455799999999 665442 468999999999999997 4322 1 2468999999999999999
Q ss_pred HHHhcC
Q 004503 455 DYIHST 460 (748)
Q Consensus 455 ~~~~~~ 460 (748)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988544
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.49 E-value=0.00028 Score=67.50 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=61.8
Q ss_pred cCccCCCCCCC---CCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc-------c--ccccccEEEEccc
Q 004503 385 ARFCFDDSLDP---KKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV-------A--QIYMAPGTMVNVT 448 (748)
Q Consensus 385 ~~~C~~~~~~~---~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~-------~--~~~~~p~~~i~~~ 448 (748)
.+.|.+....+ ..+.|+|+|+ +|+.| +..+++++||.++|++|+..+.+ . ....||+++|+.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV-~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLI-RRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEE-ECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 45798766644 7899999999 66655 55699999999999999876432 1 2468999999999
Q ss_pred chHHHHHHHhcCCC
Q 004503 449 DGDNITDYIHSTRS 462 (748)
Q Consensus 449 ~g~~l~~~~~~~~~ 462 (748)
+|+.|+.++...+.
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999987754
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.47 E-value=0.00076 Score=62.50 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=62.1
Q ss_pred CCCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCC--c---hhhhhhhcCceEEEEeecCcccc---
Q 004503 363 KEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTW--G---ADSVIKGIGGVGIIVGSEQFLDV--- 434 (748)
Q Consensus 363 ~~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~--~---~~~~~~~~Ga~g~i~~~~~~~~~--- 434 (748)
...+.++++.+.. .+..+...+++|||+|+++..+ . +..++.++||.|+|++++....+
T Consensus 21 ~~~~~~lV~~g~G-------------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~ 87 (127)
T cd04819 21 GEAKGEPVDAGYG-------------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPAT 87 (127)
T ss_pred CCeeEEEEEeCCC-------------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccc
Confidence 3456788886542 2223335569999999944444 1 44589999999999998766432
Q ss_pred -------cccccccEEEEcccchHHHHHHHhcCC
Q 004503 435 -------AQIYMAPGTMVNVTDGDNITDYIHSTR 461 (748)
Q Consensus 435 -------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 461 (748)
.....+|++.|+.+||+.|.+.++.+.
T Consensus 88 ~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 88 GDEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123569999999999999999998754
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=95.97 E-value=0.021 Score=53.33 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=53.4
Q ss_pred CCCCccceEEEEecCCCc----------h-------hhhhhhcCceEEEEeecCcc-------c-c---cccccccEEEE
Q 004503 394 DPKKVKGKLVYCKLGTWG----------A-------DSVIKGIGGVGIIVGSEQFL-------D-V---AQIYMAPGTMV 445 (748)
Q Consensus 394 ~~~~~~gkivl~~~~~~~----------~-------~~~~~~~Ga~g~i~~~~~~~-------~-~---~~~~~~p~~~i 445 (748)
...+++||||++ +++.| + ...++++||+++|+++.... . + .....+|++.|
T Consensus 34 ~~~~v~GKIvlv-~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 34 PAGAVKGKIVFF-NQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred chhhcCCeEEEe-cCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 356799999999 65544 1 24789999999999985421 1 1 12346999999
Q ss_pred cccchHHHHHHHhcCCCceE
Q 004503 446 NVTDGDNITDYIHSTRSPSA 465 (748)
Q Consensus 446 ~~~~g~~l~~~~~~~~~~~~ 465 (748)
+.+|+..|...++.+...++
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999988765544
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.91 E-value=0.15 Score=44.90 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=61.7
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEEEeecCCCCCeEEEEEEEECCCcEEEeEE
Q 004503 662 TAIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWKSPRHVVRSPI 741 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~vr~P~ 741 (748)
..+.+.+|+|.|.....|++.......-.++++|..-.+ ++|++.+++|+|.+... .+...+.|...-.+..+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~--~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP--LGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC--CceEEEEEEEEECCeEEEEEE
Confidence 556778999999999999987654234567778887777 68999999999995442 345688888876667888888
Q ss_pred EEEe
Q 004503 742 VIYR 745 (748)
Q Consensus 742 ~v~~ 745 (748)
-+..
T Consensus 98 ~a~~ 101 (102)
T PF14874_consen 98 KAEV 101 (102)
T ss_pred EEEE
Confidence 6653
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.58 E-value=0.14 Score=42.94 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=37.7
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEEEeecC
Q 004503 662 TAIFRRRVTNVGPRL-SIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPM 718 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~-~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 718 (748)
+.+++.+|+|.|... ...++++..|.|-++...|..+.--++|++++++++|+++..
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 678899999999765 468888889999998888888754479999999999998764
No 69
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=94.15 E-value=0.084 Score=51.68 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=47.7
Q ss_pred CCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc--------------------------------c--c-
Q 004503 395 PKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD--------------------------------V--A- 435 (748)
Q Consensus 395 ~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~--------------------------------~--~- 435 (748)
.-+++|||+|+ +++.+ +..+++++||+|+|+|++..+. + .
T Consensus 51 gv~v~GkIvLv-r~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLV-RAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEE-ECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 45789999999 55444 4568999999999999884210 0 0
Q ss_pred --ccccccEEEEcccchHHHHHHHhcC
Q 004503 436 --QIYMAPGTMVNVTDGDNITDYIHST 460 (748)
Q Consensus 436 --~~~~~p~~~i~~~~g~~l~~~~~~~ 460 (748)
....||++-|+.++++.|++.+.-.
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1234888999999999999887543
No 70
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.08 E-value=1 Score=40.89 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=42.0
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEEEeecCC
Q 004503 661 TTAIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMS 719 (748)
Q Consensus 661 ~~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~ 719 (748)
..-.++.+|+|....+.+|++++..++|+++......+++ ++|++.++.|.+..+...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 4566889999999999999999999889999665588999 689999999999987754
No 71
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=93.07 E-value=0.22 Score=46.84 Aligned_cols=61 Identities=23% Similarity=0.038 Sum_probs=44.5
Q ss_pred CCeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCC------------------c---hhhhhhhcCce
Q 004503 364 EKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTW------------------G---ADSVIKGIGGV 422 (748)
Q Consensus 364 ~~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~------------------~---~~~~~~~~Ga~ 422 (748)
....|+++.+..- .+..|....+..-+++|||||+++..+ . +...++++||.
T Consensus 19 ~~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (142)
T cd04814 19 IKDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAA 91 (142)
T ss_pred ccceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCc
Confidence 3467788776432 134688788888899999999954433 0 34588999999
Q ss_pred EEEEeecCc
Q 004503 423 GIIVGSEQF 431 (748)
Q Consensus 423 g~i~~~~~~ 431 (748)
|+|++++..
T Consensus 92 gvIii~~~~ 100 (142)
T cd04814 92 GVLIVHELA 100 (142)
T ss_pred EEEEEeCCC
Confidence 999999864
No 72
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.32 E-value=0.47 Score=44.35 Aligned_cols=60 Identities=23% Similarity=0.093 Sum_probs=43.3
Q ss_pred CeeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCCc---------------hhhhhhhcCceEEEEeec
Q 004503 365 KFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWG---------------ADSVIKGIGGVGIIVGSE 429 (748)
Q Consensus 365 ~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~~---------------~~~~~~~~Ga~g~i~~~~ 429 (748)
.+-+++|.+... ....|....+..-+++|||||+++..+. +..++.+.||.|+|++++
T Consensus 22 v~gelVfvGyG~-------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 22 VEAPLVFVGYGL-------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred ceEeEEEecCCc-------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 456777766432 1356777777788999999999544321 345889999999999997
Q ss_pred Cc
Q 004503 430 QF 431 (748)
Q Consensus 430 ~~ 431 (748)
..
T Consensus 95 ~~ 96 (137)
T cd04820 95 PR 96 (137)
T ss_pred Cc
Confidence 54
No 73
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.28 E-value=0.72 Score=43.86 Aligned_cols=83 Identities=18% Similarity=0.075 Sum_probs=52.8
Q ss_pred eeeeEeccccccCCCCccccCccCCCCCCCCCccceEEEEecCCC-----------------c----hhhhhhhcCceEE
Q 004503 366 FYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTW-----------------G----ADSVIKGIGGVGI 424 (748)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~~~~-----------------~----~~~~~~~~Ga~g~ 424 (748)
+-++||.+... ....|....+..-+++|||||+++... + +..++++.||+|+
T Consensus 21 tg~lVfvGyGi-------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYGI-------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCCc-------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 45777766432 135577777777899999999954421 1 3458899999999
Q ss_pred EEeecCccccccccccc------EEEEcccchHHHHH
Q 004503 425 IVGSEQFLDVAQIYMAP------GTMVNVTDGDNITD 455 (748)
Q Consensus 425 i~~~~~~~~~~~~~~~p------~~~i~~~~g~~l~~ 455 (748)
|++++..........+| .++++....+.++.
T Consensus 94 Iv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 94 IVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred EEEeCCcccCcccccccccCccceEEechHHHHHHhh
Confidence 99998764422111112 45566555555554
No 74
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=89.43 E-value=4.5 Score=37.04 Aligned_cols=68 Identities=12% Similarity=0.282 Sum_probs=52.2
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeC----CCCe-E-------------------EEEecCeeeeccCCcEEEEEEEEEeec
Q 004503 662 TAIFRRRVTNVGPRLSIYNATIKA----PKGV-N-------------------ITVKPMSLSFSRTSHKRSFSVVVKAKP 717 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v~~----~~g~-~-------------------v~v~p~~l~~~~~g~~~~~~vt~~~~~ 717 (748)
+.+++.+|+|.++.+.+|.+++.. ..|+ . ++ .|..+++ +++|+++++++++.+.
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CCCCEEEEEEEEEcCC
Confidence 788999999999999999988632 1221 0 22 2666888 6899999999999988
Q ss_pred CCCCCeEEEEEEEE
Q 004503 718 MSSTQVLSGSLEWK 731 (748)
Q Consensus 718 ~~~~~~~~G~~~~~ 731 (748)
....+.+-|-|.++
T Consensus 106 ~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAFDGIILGGIYFS 119 (121)
T ss_pred CCcCCEEEeeEEEE
Confidence 76677888888775
No 75
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=88.34 E-value=1.1 Score=49.35 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=56.9
Q ss_pred CCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCcccc---------cccccccEEEEcccchHHHHHHHhcCC
Q 004503 395 PKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLDV---------AQIYMAPGTMVNVTDGDNITDYIHSTR 461 (748)
Q Consensus 395 ~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 461 (748)
...+++|+++. .|+.| +...++++||.++++.|+..+.+ ..+..||+++|++++++.+.+-...+.
T Consensus 91 ~~kl~~~~~~v-~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALV-FRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEE-ecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 45689999999 77766 44588999999999999854221 456789999999999999998777776
Q ss_pred CceEEEE
Q 004503 462 SPSAVIY 468 (748)
Q Consensus 462 ~~~~~i~ 468 (748)
+.++.+.
T Consensus 170 ~V~~~lY 176 (541)
T KOG2442|consen 170 NVELALY 176 (541)
T ss_pred eEEEEEE
Confidence 6655443
No 76
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=83.15 E-value=1.2 Score=41.98 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=28.0
Q ss_pred CCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCc
Q 004503 396 KKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQF 431 (748)
Q Consensus 396 ~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~ 431 (748)
-+++|||+|+ +.+.. +..++++.||+|+|+|.+..
T Consensus 37 V~v~GkIvi~-RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALL-KLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEE-eccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 4699999999 44332 44599999999999999854
No 77
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=82.13 E-value=1.9 Score=43.68 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCCccceEEEEecCCCc---hhhhhhhcCceEEEEeecCc
Q 004503 395 PKKVKGKLVYCKLGTWG---ADSVIKGIGGVGIIVGSEQF 431 (748)
Q Consensus 395 ~~~~~gkivl~~~~~~~---~~~~~~~~Ga~g~i~~~~~~ 431 (748)
.-+++|||||++..... +..+++++||+|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 45799999999443332 44589999999999999864
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=82.09 E-value=12 Score=33.87 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=45.8
Q ss_pred EEEEEEEEcCCCCeeEEEEEeC---CCC----eEEEEecCeeeeccCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 004503 664 IFRRRVTNVGPRLSIYNATIKA---PKG----VNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWK 731 (748)
Q Consensus 664 ~~~rtvtnvg~~~~ty~~~v~~---~~g----~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 731 (748)
+.+.+|+|.++.+..+.+.+.. ..+ -.+.+.|..+.+ ++|+++.+.| +.......+....=+|.++
T Consensus 17 ~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 17 SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 4578999999988788877764 111 257799999999 6899999999 6644433444444456554
No 79
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=80.85 E-value=1.2 Score=52.86 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=36.2
Q ss_pred cCeeeeccCCcEEEEEEEEEeecCCCCCeEEEEEEEEC-----CCcEEEeEEEEE
Q 004503 695 PMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWKS-----PRHVVRSPIVIY 744 (748)
Q Consensus 695 p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~-----~~~~vr~P~~v~ 744 (748)
|+.|-+ .++.+.|.|+|+++... .+..|++|.=.| .+..-|+|+.|.
T Consensus 636 p~~l~l--~~~~R~i~VrVDpt~l~-~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 636 PEYLML--ANQGRGINVRVDPTGLA-PGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred chhhee--ccCCceeEEEECCcCCC-CCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 777777 47789999999987754 667888887644 456789999885
No 80
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=77.23 E-value=24 Score=32.98 Aligned_cols=69 Identities=9% Similarity=0.185 Sum_probs=50.3
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEEEeecCCCCCeEEEEEEEEC
Q 004503 662 TAIFRRRVTNVGPRL-SIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWKS 732 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~-~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~ 732 (748)
...+...+-|..+.. ..-++....-.++.+.-.|..+++ .+++.++++.+++..... .++.||.|++..
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSte-tGvIfG~I~Yd~ 139 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTE-TGVIFGNIVYDG 139 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEecc-CCEEEEEEEEec
Confidence 444555666665443 233444545567888888999999 688899999999987765 779999999863
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.85 E-value=27 Score=38.93 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=55.7
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 004503 662 TAIFRRRVTNVGPRL-SIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWK 731 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~-~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 731 (748)
..++...+.|.|+.+ ..-++++..|.|-++.|.|.++---++|+.+++.+|++++.....+-++=+|+-+
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 677888999999876 4567889999999999999988766899999999999988754444444445443
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=73.79 E-value=16 Score=41.10 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=47.8
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEEEeec
Q 004503 662 TAIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKP 717 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 717 (748)
....+..+.|.++.+.+|+++++..++.++...+..+++ ++||+.++.|++..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 556788999999999999999999999988876568888 6899999999998765
No 83
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=73.08 E-value=18 Score=31.85 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=40.0
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEEEeec
Q 004503 662 TAIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKP 717 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 717 (748)
..+...+|+|.++....|.+....|.... |.|..-.+ ++|++.++.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 34566799999999999999988887664 56998888 6899999999998743
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.91 E-value=45 Score=37.27 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=46.0
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEe-CCCCeEEEEecC-----eeeeccCCcEEEEEEEEEeecC
Q 004503 662 TAIFRRRVTNVGPRLSIYNATIK-APKGVNITVKPM-----SLSFSRTSHKRSFSVVVKAKPM 718 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v~-~~~g~~v~v~p~-----~l~~~~~g~~~~~~vt~~~~~~ 718 (748)
+..++.++.|.|..+.+|..++. .|+|.+....-. ++.+ .+||+++|+|.+.++..
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 66788999999999999999998 788877766533 4556 58999999999987664
No 85
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.98 E-value=20 Score=38.77 Aligned_cols=75 Identities=13% Similarity=-0.007 Sum_probs=54.7
Q ss_pred cCccCCCCC---CCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc-c------cccccccEEEEcccch
Q 004503 385 ARFCFDDSL---DPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD-V------AQIYMAPGTMVNVTDG 450 (748)
Q Consensus 385 ~~~C~~~~~---~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~-~------~~~~~~p~~~i~~~~g 450 (748)
.++|.+... ........++++ .|+.+ +..+++++|..++|+||+...+ + .....+++++++...|
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI-~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALI-RRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred ccccCccccCccCCCCCcceEEEE-EccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 356776433 234455678888 66555 4568999999999999976533 2 4667799999999999
Q ss_pred HHHHHHHhcC
Q 004503 451 DNITDYIHST 460 (748)
Q Consensus 451 ~~l~~~~~~~ 460 (748)
+.|.+|....
T Consensus 141 e~l~~~~~~~ 150 (348)
T KOG4628|consen 141 ELLSSYAGRT 150 (348)
T ss_pred HHHHHhhccc
Confidence 9999985544
No 86
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=58.12 E-value=22 Score=34.07 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=28.5
Q ss_pred CCCCCCccceEEEEecCCCc----------------------hhhhhhhcCceEEEEeecC
Q 004503 392 SLDPKKVKGKLVYCKLGTWG----------------------ADSVIKGIGGVGIIVGSEQ 430 (748)
Q Consensus 392 ~~~~~~~~gkivl~~~~~~~----------------------~~~~~~~~Ga~g~i~~~~~ 430 (748)
.+..-|++|||||+...... +...+++.||.|+|+..+.
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 45567899999999633210 3347899999999998764
No 87
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=51.91 E-value=38 Score=28.30 Aligned_cols=40 Identities=23% Similarity=0.474 Sum_probs=29.3
Q ss_pred EEEEecCeeeeccCCcEEEEEEEEEeecCCCCCeEEEEEEEECCC
Q 004503 690 NITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWKSPR 734 (748)
Q Consensus 690 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~ 734 (748)
.+++.|..+++ ..|+++.|+++++..... - ...+.|+..+
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~---~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAK---V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCC---c-cceEEEEECC
Confidence 57888999999 589999999997654322 1 5678887533
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=51.35 E-value=1.2e+02 Score=25.69 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=31.8
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCeEEEEecCe-eeeccCCcEEEEEEEEEee
Q 004503 662 TAIFRRRVTNVGPRL-SIYNATIKAPKGVNITVKPMS-LSFSRTSHKRSFSVVVKAK 716 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~-~ty~~~v~~~~g~~v~v~p~~-l~~~~~g~~~~~~vt~~~~ 716 (748)
..+++.+|+|.|... ..+.+.+.. .|..+ .-.. -.+ ++|+++++++++...
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~-~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYL-DGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEE-TTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEE-CCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 678889999999875 566666653 23333 1222 256 589899888888876
No 89
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=47.69 E-value=20 Score=23.07 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHH
Q 004503 5 MMKCLCYFSYQLL 17 (748)
Q Consensus 5 ~Mk~~~~~~~~ll 17 (748)
||||+.+.++.++
T Consensus 6 mmKkil~~l~a~~ 18 (25)
T PF08139_consen 6 MMKKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHHHH
Confidence 6788665544443
No 90
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=46.53 E-value=55 Score=27.66 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=25.5
Q ss_pred EEEEEEEEcCCCCee--------EEEEEeCCCCeEE---------EEecCeeeeccCCcEEEEEEEEEeecC
Q 004503 664 IFRRRVTNVGPRLSI--------YNATIKAPKGVNI---------TVKPMSLSFSRTSHKRSFSVVVKAKPM 718 (748)
Q Consensus 664 ~~~rtvtnvg~~~~t--------y~~~v~~~~g~~v---------~v~p~~l~~~~~g~~~~~~vt~~~~~~ 718 (748)
.++.+|+|.++.+.+ |.+.+..+.|-.| +-.-...++ ++||+++|+.++.....
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKDL 73 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS---
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCCC
Confidence 456777888765433 3344443333332 222334566 68999999988876553
No 91
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=44.42 E-value=16 Score=31.80 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHhccccc
Q 004503 7 KCLCYFSYQLLLILILTAPLDA 28 (748)
Q Consensus 7 k~~~~~~~~ll~~~~~~~~~~~ 28 (748)
|.+++|.++|+++|++++.+++
T Consensus 4 K~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 4334443333333333333333
No 92
>PLN03080 Probable beta-xylosidase; Provisional
Probab=38.75 E-value=68 Score=39.17 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=45.6
Q ss_pred eEEEEEEEEEcCCCCeeEEEEE--eCCCC-e----EEEEecCeeeeccCCcEEEEEEEEEe-ec----CCCCCeE--EEE
Q 004503 662 TAIFRRRVTNVGPRLSIYNATI--KAPKG-V----NITVKPMSLSFSRTSHKRSFSVVVKA-KP----MSSTQVL--SGS 727 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v--~~~~g-~----~v~v~p~~l~~~~~g~~~~~~vt~~~-~~----~~~~~~~--~G~ 727 (748)
..+++.+|||+|+.+....+.+ ..|.. + .--+--.++.+ ++||+++++++++. .. .....|. -|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 4678999999999887766654 23321 1 11112334455 68999998888875 32 1223343 355
Q ss_pred EEE-EC-CCcEEEeE
Q 004503 728 LEW-KS-PRHVVRSP 740 (748)
Q Consensus 728 ~~~-~~-~~~~vr~P 740 (748)
..+ .+ ..|.|+++
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 443 33 45666654
No 93
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.59 E-value=93 Score=28.79 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=27.0
Q ss_pred CcccEEEEecceeeEEEEEeCHHHHHHhhcCCCeE
Q 004503 70 AKESIVYSYTESFNAFAAKLSNDEAQKLQRMDRVL 104 (748)
Q Consensus 70 ~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~ 104 (748)
...++.|.=+.+..-+.+.++.-..+.|.++|++.
T Consensus 91 v~ekidY~D~yA~E~vdId~tkvd~k~L~k~~G~s 125 (152)
T COG4808 91 VEEKLDYKDTYAQENVDIDMTKVDFKALQKISGIS 125 (152)
T ss_pred cceeeeeecccceeeeccceeeecHHHHhcCcCcc
Confidence 34555555556778888888999999999999984
No 94
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.27 E-value=1.4e+02 Score=32.64 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=27.3
Q ss_pred eeEEEEEEEEEcCCCCee---EE-EEE--eC----------C------CCeEEEEecCeeeeccCCcEEEEEEEEEe
Q 004503 661 TTAIFRRRVTNVGPRLSI---YN-ATI--KA----------P------KGVNITVKPMSLSFSRTSHKRSFSVVVKA 715 (748)
Q Consensus 661 ~~~~~~rtvtnvg~~~~t---y~-~~v--~~----------~------~g~~v~v~p~~l~~~~~g~~~~~~vt~~~ 715 (748)
++.+++.+|||.|+++.. |+ +.+ .. | .| ++|+|+. -+ ++||+++++|+.+.
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PI-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-Cc-CCCceEEEEEEeeh
Confidence 377899999999987532 11 111 01 1 13 3455554 23 58999999998863
No 95
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=33.98 E-value=43 Score=25.18 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=6.7
Q ss_pred hhhHHHHHHHH
Q 004503 5 MMKCLCYFSYQ 15 (748)
Q Consensus 5 ~Mk~~~~~~~~ 15 (748)
|||+.+.++++
T Consensus 1 MmKk~i~~i~~ 11 (48)
T PRK10081 1 MVKKTIAAIFS 11 (48)
T ss_pred ChHHHHHHHHH
Confidence 68886655333
No 96
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=33.57 E-value=1.6e+02 Score=21.64 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=25.5
Q ss_pred EEEEEcCCCCeeEEEEEeCCCCeEEEEecCeeeeccCCcEEEEEEEE
Q 004503 667 RRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVV 713 (748)
Q Consensus 667 rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~ 713 (748)
.+++|.|+.+...+ .+...=|-.. ++.+.=.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 46889998765432 2333334322 23333345 689999988874
No 97
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=32.47 E-value=2.2e+02 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=33.5
Q ss_pred cCceEEEEEEeecCCCCCHHHHHHHHHHHHhCCccEEEEccCCC
Q 004503 241 PNARVAAYKVCWVSSGCSDMDILAAFDAAIHDGVNVISISIGGA 284 (748)
Q Consensus 241 P~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~S~G~~ 284 (748)
++++|+.+-- ..||....++.-+++..+.|+|+|-+|-.-.
T Consensus 36 ~~~elvgf~~---CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGFFT---CGGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEEee---CCCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 4678887644 4588899999999999999999999986654
No 98
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=31.58 E-value=1.2e+02 Score=37.16 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=42.0
Q ss_pred CCCCceeeeecc--C---CceeeEEEEEEEEEcCCCCeeEEEEE--eCCCCeEEEEec-------CeeeeccCCcEEEEE
Q 004503 645 LNYPTMQVSLKS--N---GELTTAIFRRRVTNVGPRLSIYNATI--KAPKGVNITVKP-------MSLSFSRTSHKRSFS 710 (748)
Q Consensus 645 ln~psi~~~~~~--~---~~~~~~~~~rtvtnvg~~~~ty~~~v--~~~~g~~v~v~p-------~~l~~~~~g~~~~~~ 710 (748)
|-|-+|..+.+. . ....+.+++.+|||+|+.+..-.+.+ ..|.+- +. .| .++.+ ++||+++++
T Consensus 646 LSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~ 722 (765)
T PRK15098 646 LSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVS 722 (765)
T ss_pred CCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEE
Confidence 666666655321 0 00115789999999998876555554 233221 11 22 33455 689999999
Q ss_pred EEEEeec
Q 004503 711 VVVKAKP 717 (748)
Q Consensus 711 vt~~~~~ 717 (748)
+++....
T Consensus 723 ~~l~~~~ 729 (765)
T PRK15098 723 FPIDIEA 729 (765)
T ss_pred EeecHHH
Confidence 9888644
No 99
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=31.36 E-value=89 Score=29.65 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=53.0
Q ss_pred cCccCCCCCCCCCccceEEEEecCCCc----hhhhhhhcCceEEEEeecCccc-----c--------cccccccEEEEcc
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWG----ADSVIKGIGGVGIIVGSEQFLD-----V--------AQIYMAPGTMVNV 447 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivl~~~~~~~----~~~~~~~~Ga~g~i~~~~~~~~-----~--------~~~~~~p~~~i~~ 447 (748)
...|.+.. +.-...|.+.++ +||.| +..+++++||..+|+.++.... + .+.-.+|++++-.
T Consensus 74 p~aC~elr-N~~f~~d~vaL~-eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 74 PHACEELR-NEIFAPDSVALM-ERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred hhHHHHHh-hcccCCCcEEEE-ecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 56787533 334567788999 67655 5568999999999988764321 1 2345699999988
Q ss_pred cchHHHHHHHhcCCCceE
Q 004503 448 TDGDNITDYIHSTRSPSA 465 (748)
Q Consensus 448 ~~g~~l~~~~~~~~~~~~ 465 (748)
.+|..+..-++.-....+
T Consensus 152 ~~Gy~ir~sL~r~~r~ha 169 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHA 169 (193)
T ss_pred cceEEEehhHHHhCCccE
Confidence 888776665554443333
No 100
>PRK09810 entericidin A; Provisional
Probab=29.88 E-value=51 Score=23.98 Aligned_cols=9 Identities=44% Similarity=0.460 Sum_probs=5.9
Q ss_pred hhhHHHHHH
Q 004503 5 MMKCLCYFS 13 (748)
Q Consensus 5 ~Mk~~~~~~ 13 (748)
|||++.+++
T Consensus 1 mMkk~~~l~ 9 (41)
T PRK09810 1 MMKRLIVLV 9 (41)
T ss_pred ChHHHHHHH
Confidence 588866554
No 101
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=29.66 E-value=1.6e+02 Score=25.88 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=11.3
Q ss_pred EEEEEEEEEcCCCC
Q 004503 663 AIFRRRVTNVGPRL 676 (748)
Q Consensus 663 ~~~~rtvtnvg~~~ 676 (748)
.+++.+|+|.|+.+
T Consensus 20 ~~~~l~V~NtGDRp 33 (101)
T cd00407 20 EAVTLKVKNTGDRP 33 (101)
T ss_pred CEEEEEEEeCCCcc
Confidence 45788999999875
No 102
>PRK13202 ureB urease subunit beta; Reviewed
Probab=29.62 E-value=1.2e+02 Score=26.77 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=11.4
Q ss_pred EEEEEEEEEcCCCC
Q 004503 663 AIFRRRVTNVGPRL 676 (748)
Q Consensus 663 ~~~~rtvtnvg~~~ 676 (748)
.+++.+|+|.|+.+
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 45788999999875
No 103
>PRK13203 ureB urease subunit beta; Reviewed
Probab=29.37 E-value=1.5e+02 Score=26.15 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=11.4
Q ss_pred EEEEEEEEEcCCCC
Q 004503 663 AIFRRRVTNVGPRL 676 (748)
Q Consensus 663 ~~~~rtvtnvg~~~ 676 (748)
.+++.+|+|.|+.+
T Consensus 20 ~~~~l~V~NtGDRP 33 (102)
T PRK13203 20 ETVTLTVANTGDRP 33 (102)
T ss_pred CEEEEEEEeCCCCc
Confidence 45788999999875
No 104
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=28.31 E-value=47 Score=23.96 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHhHhcCCCCCHHHHHHHHhccC
Q 004503 546 VAYVKSFHPSWSPAAIKSAIMTTA 569 (748)
Q Consensus 546 aALl~~~~P~~sp~~ik~~L~~TA 569 (748)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999997654
No 105
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=27.25 E-value=91 Score=29.15 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=23.4
Q ss_pred CccchhhHHHHHHHHHHHHHHHhcccccccccCCcEEEEEeCC
Q 004503 1 MAKLMMKCLCYFSYQLLLILILTAPLDATEENQKNFYVAYLGD 43 (748)
Q Consensus 1 ~~~~~Mk~~~~~~~~ll~~~~~~~~~~~~~~~~~~~yiV~~~~ 43 (748)
|||+..|.+.+++.+.+.+++++....+.+....=.|-..++.
T Consensus 1 ~~kf~~~~~~~~~a~~~~~~~~a~~~~~~Asdn~i~F~F~i~~ 43 (146)
T PF10916_consen 1 MKKFAKKNVRLILAAAIGISVFAFVSHAAASDNNIPFSFTIKP 43 (146)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCceEEEeCC
Confidence 8888655555555555555555544444443343345555555
No 106
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=26.71 E-value=31 Score=15.89 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.2
Q ss_pred ccCCCC
Q 004503 482 SFSSRG 487 (748)
Q Consensus 482 ~fSs~G 487 (748)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 107
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=26.49 E-value=1.8e+02 Score=29.82 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=35.1
Q ss_pred EEEEEEEcCCCCeeEEEEEeC---C---CC----------eEEEEecCeeeeccCCcEEEEEEEEEe
Q 004503 665 FRRRVTNVGPRLSIYNATIKA---P---KG----------VNITVKPMSLSFSRTSHKRSFSVVVKA 715 (748)
Q Consensus 665 ~~rtvtnvg~~~~ty~~~v~~---~---~g----------~~v~v~p~~l~~~~~g~~~~~~vt~~~ 715 (748)
...+|.|.|+....+++++.. | .+ -++-++|..|++ ++|+++.+.|.-..
T Consensus 35 ~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 35 TSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 457888999888777776521 2 11 157788999999 68888887766543
No 108
>COG5510 Predicted small secreted protein [Function unknown]
Probab=26.32 E-value=63 Score=23.68 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=9.4
Q ss_pred hhhHHHHH-HHHHHHHHHHhc
Q 004503 5 MMKCLCYF-SYQLLLILILTA 24 (748)
Q Consensus 5 ~Mk~~~~~-~~~ll~~~~~~~ 24 (748)
|||+..++ ++++++.+++++
T Consensus 1 mmk~t~l~i~~vll~s~llaa 21 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAA 21 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 57774444 344444444443
No 109
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=25.96 E-value=1.4e+02 Score=26.32 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=11.3
Q ss_pred EEEEEEEEEcCCCC
Q 004503 663 AIFRRRVTNVGPRL 676 (748)
Q Consensus 663 ~~~~rtvtnvg~~~ 676 (748)
.+++.+|+|.|+.+
T Consensus 20 ~~~~l~V~NtGDRP 33 (101)
T TIGR00192 20 KTVSVKVKNTGDRP 33 (101)
T ss_pred cEEEEEEEeCCCcc
Confidence 45778999999875
No 110
>PRK15019 CsdA-binding activator; Provisional
Probab=25.73 E-value=56 Score=30.96 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=27.0
Q ss_pred eeccccchhhHHHHHHHHhHhcCCCCCHHHHHH
Q 004503 531 LMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKS 563 (748)
Q Consensus 531 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~ 563 (748)
.+.|.| =|+.|-|.+||+.+.+-+.+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 57999999999999999999999875
No 111
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.61 E-value=62 Score=30.36 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=27.6
Q ss_pred eeeccccchhhHHHHHHHHhHhcCCCCCHHHHHH
Q 004503 530 TLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKS 563 (748)
Q Consensus 530 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~ 563 (748)
-.+.|.| =|+.|-|.+||+.+.+-+.+|++|.+
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3445666 48999999999999999999999874
No 112
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=24.57 E-value=4.1e+02 Score=23.36 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=10.9
Q ss_pred eEEEEEEEEEcCCCCe
Q 004503 662 TAIFRRRVTNVGPRLS 677 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ 677 (748)
..+++.+|+|.|+.+.
T Consensus 18 r~~~~l~V~N~GDRPI 33 (100)
T PF00699_consen 18 RERITLEVTNTGDRPI 33 (100)
T ss_dssp SEEEEEEEEE-SSS-E
T ss_pred CcEEEEEEEeCCCcce
Confidence 3567899999998753
No 113
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=23.89 E-value=33 Score=20.08 Aligned_cols=9 Identities=33% Similarity=0.419 Sum_probs=4.5
Q ss_pred hhhHHHHHH
Q 004503 5 MMKCLCYFS 13 (748)
Q Consensus 5 ~Mk~~~~~~ 13 (748)
|||...++.
T Consensus 1 MMk~vIIlv 9 (19)
T PF13956_consen 1 MMKLVIILV 9 (19)
T ss_pred CceehHHHH
Confidence 566544433
No 114
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=23.56 E-value=3.5e+02 Score=23.88 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=29.6
Q ss_pred eEEEEEEEEEcCCCCeeEE---EEEeCCCCeEEEEec---------CeeeeccCCcEEEEEEEEEeecCC
Q 004503 662 TAIFRRRVTNVGPRLSIYN---ATIKAPKGVNITVKP---------MSLSFSRTSHKRSFSVVVKAKPMS 719 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~---~~v~~~~g~~v~v~p---------~~l~~~~~g~~~~~~vt~~~~~~~ 719 (748)
-..+..+|+|.|+.+..+. +.+....|-...... ..-++ ++|++.+..|.|..+...
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~~~ 105 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPKDD 105 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEESTT-
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECCCC
Confidence 4668889999998765543 334333333332221 22355 578888888888887654
No 115
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.74 E-value=60 Score=22.29 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHh
Q 004503 537 MACPHIAGVVAYV 549 (748)
Q Consensus 537 mAaP~VAG~aALl 549 (748)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 116
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=22.67 E-value=95 Score=33.69 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=31.8
Q ss_pred eeEEEEEEEEEcCCCCe---eE-EEEE---e----------CCC-----CeEEEEecCeeeeccCCcEEEEEEEEEe
Q 004503 661 TTAIFRRRVTNVGPRLS---IY-NATI---K----------APK-----GVNITVKPMSLSFSRTSHKRSFSVVVKA 715 (748)
Q Consensus 661 ~~~~~~rtvtnvg~~~~---ty-~~~v---~----------~~~-----g~~v~v~p~~l~~~~~g~~~~~~vt~~~ 715 (748)
++.+++..|||.|+... .| ++.+ + -|+ |++|+ +++ -+ .+||+++++|+.+.
T Consensus 282 R~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~--d~~-pI-~PGETr~v~v~aqd 354 (399)
T TIGR03079 282 RALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVD--DQS-AI-APGETVEVKMEAKD 354 (399)
T ss_pred cEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeC--CCC-Cc-CCCcceEEEEEEeh
Confidence 36778899999998752 22 2222 1 133 55554 332 12 68999999988874
No 117
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=22.23 E-value=2.6e+02 Score=29.33 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.2
Q ss_pred eCHHHHHHhhcCCCeEEEEcCceeccc
Q 004503 89 LSNDEAQKLQRMDRVLSVFPNRYHQLH 115 (748)
Q Consensus 89 l~~~~~~~L~~~p~V~~V~~~~~~~~~ 115 (748)
|-+.++++|++-.-|.+|-|+..-.+.
T Consensus 65 LrPSDv~rlq~Adlv~WvGp~lEaFL~ 91 (318)
T COG4531 65 LRPSDVKRLQSADLVVWVGPDLEAFLD 91 (318)
T ss_pred CChhHHHHhhcCCEEEEECccHHHHhh
Confidence 678999999999999999887755543
No 118
>PRK13201 ureB urease subunit beta; Reviewed
Probab=21.82 E-value=1.9e+02 Score=26.77 Aligned_cols=14 Identities=29% Similarity=0.164 Sum_probs=11.3
Q ss_pred EEEEEEEEEcCCCC
Q 004503 663 AIFRRRVTNVGPRL 676 (748)
Q Consensus 663 ~~~~rtvtnvg~~~ 676 (748)
.+++.+|+|.|+.+
T Consensus 20 ~~~~l~V~NtGDRP 33 (136)
T PRK13201 20 PETVIEVENTGDRP 33 (136)
T ss_pred CEEEEEEEeCCCcc
Confidence 45788999999875
No 119
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=21.54 E-value=76 Score=29.73 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=27.0
Q ss_pred eeccccchhhHHHHHHHHhHhcCCCCCHHHHHH
Q 004503 531 LMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKS 563 (748)
Q Consensus 531 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~ 563 (748)
.+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444555 58999999999999999999999864
No 120
>PRK13205 ureB urease subunit beta; Reviewed
Probab=21.35 E-value=1.9e+02 Score=27.37 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=12.0
Q ss_pred eEEEEEEEEEcCCCC
Q 004503 662 TAIFRRRVTNVGPRL 676 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~ 676 (748)
..+++.+|+|.|+.+
T Consensus 19 R~~i~L~V~NtGDRP 33 (162)
T PRK13205 19 REAKTIEIINTGDRP 33 (162)
T ss_pred CcEEEEEEEeCCCCc
Confidence 345789999999875
No 121
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=21.31 E-value=3.8e+02 Score=20.41 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=23.4
Q ss_pred eEEEEEEEEEcCCCCeeEEEEE--eCCCCeEEEEecCeeee
Q 004503 662 TAIFRRRVTNVGPRLSIYNATI--KAPKGVNITVKPMSLSF 700 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~~ty~~~v--~~~~g~~v~v~p~~l~~ 700 (748)
..+++.+++|.|+...+ .+.+ .-|+|++.. |.++++
T Consensus 13 ~v~Yti~v~N~g~~~a~-~v~v~D~lP~g~~~v--~~S~~~ 50 (53)
T TIGR01451 13 TITYTITVTNNGNVPAT-NVVVTDILPSGTTFV--SNSVTV 50 (53)
T ss_pred EEEEEEEEEECCCCceE-eEEEEEcCCCCCEEE--eCcEEE
Confidence 67899999999987654 3333 346666542 555554
No 122
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.23 E-value=69 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=22.6
Q ss_pred cceeeccccchhhHHHHHHH------HhHhcCCCCCHHHHHHHHh
Q 004503 528 KFTLMSGTSMACPHIAGVVA------YVKSFHPSWSPAAIKSAIM 566 (748)
Q Consensus 528 ~y~~~sGTSmAaP~VAG~aA------Ll~~~~P~~sp~~ik~~L~ 566 (748)
+--.+.||=+..=.|....+ -+.+.||.+++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 33456677666555544432 3455699999999999984
No 123
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=21.07 E-value=1.6e+02 Score=26.03 Aligned_cols=9 Identities=11% Similarity=-0.182 Sum_probs=4.3
Q ss_pred CccchhhHH
Q 004503 1 MAKLMMKCL 9 (748)
Q Consensus 1 ~~~~~Mk~~ 9 (748)
||++-+|++
T Consensus 1 ~~~~~~~~~ 9 (103)
T PRK14125 1 LKLKESKIH 9 (103)
T ss_pred CchHHHHHH
Confidence 555544443
No 124
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=77 Score=29.84 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhHhcCCCCCHHHHH
Q 004503 539 CPHIAGVVAYVKSFHPSWSPAAIK 562 (748)
Q Consensus 539 aP~VAG~aALl~~~~P~~sp~~ik 562 (748)
|+.|.|.+|++.+.+-..+|++|.
T Consensus 80 A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 80 ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 689999999999999999999974
No 125
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.40 E-value=87 Score=28.78 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=25.8
Q ss_pred eeccccchhhHHHHHHHHhHhcCCCCCHHHHHHH
Q 004503 531 LMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSA 564 (748)
Q Consensus 531 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~ 564 (748)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4445554 67999999999999999999998653
No 126
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=20.38 E-value=5.6e+02 Score=22.28 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=35.6
Q ss_pred eEEEEEEEEEcCCCC-eeEE-----EEEeCCCCeE---EEEecCeeeeccCCcEEEEEEEEEeec
Q 004503 662 TAIFRRRVTNVGPRL-SIYN-----ATIKAPKGVN---ITVKPMSLSFSRTSHKRSFSVVVKAKP 717 (748)
Q Consensus 662 ~~~~~rtvtnvg~~~-~ty~-----~~v~~~~g~~---v~v~p~~l~~~~~g~~~~~~vt~~~~~ 717 (748)
..++..+++|..+.. .+-+ .++.. .|+. .......+++ ++|++.++++++....
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 677889999999876 5522 23343 4663 5666777788 6899999999998655
No 127
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=20.15 E-value=1e+02 Score=29.41 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHhcccccccccCCcEEEEEeCC
Q 004503 6 MKCLCYFSYQLLLILILTAPLDATEENQKNFYVAYLGD 43 (748)
Q Consensus 6 Mk~~~~~~~~ll~~~~~~~~~~~~~~~~~~~yiV~~~~ 43 (748)
||++++++++++++++.++.......-.+|.|=+..+-
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~t~~~ 38 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGLWEVTTTT 38 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcccEEEEEe
Confidence 55544444444333333333333333457777666554
Done!