Query 004503
Match_columns 748
No_of_seqs 330 out of 3083
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 18:04:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004503.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1811-1815//hhsearch_pdb/004503hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6s_A Subtilisin-like proteas 1.0 1 1 1023.9 50.1 611 116-746 1-645 (649)
2 3vta_A Cucumisin; subtilisin-l 1.0 1 1 979.2 52.3 615 116-746 1-620 (621)
3 1xf1_A C5A peptidase, SCP; hyd 1.0 1 1 719.0 46.0 528 122-747 3-607 (926)
4 3afg_A Subtilisin-like serine 1.0 1 1 508.8 35.1 364 33-598 34-419 (539)
5 2p4e_P Proprotein convertase s 1.0 1 1 486.6 7.8 334 34-572 75-422 (692)
6 3t41_A Epidermin leader peptid 1.0 1 1 471.5 30.5 354 33-598 43-466 (471)
7 2z2z_A TK-subtilisin precursor 1.0 1 1 466.6 23.0 341 34-597 2-392 (395)
8 1r6v_A Subtilisin-like serine 1.0 1 1 458.5 27.6 374 30-608 27-450 (671)
9 1y9z_A Alkaline serine proteas 1.0 1 1 450.6 24.1 385 117-619 3-438 (441)
10 3lxu_X Tripeptidyl-peptidase 2 1.0 1 1 424.6 27.0 413 138-746 214-653 (1354)
No 1
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=1.00 E-value=1 Score=1023.88 Aligned_cols=611 Identities=35% Similarity=0.589 Sum_probs=549.9
Q ss_pred CCCCCCCCCCCC-CCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECC
Q ss_conf 577863238863-2346-899999839999912789999688789999998876764346677756--786247654214
Q 004503 116 TTRSWDFIGLPQ-TARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSG--CNNKLIGARYFK 191 (748)
Q Consensus 116 ~~~~~~~~~~~~-~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~--~n~ki~g~~~~~ 191 (748)
++++|+|++++. .++| .+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.|.+|.. ||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCCHHHCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 98896776999725468605899998999982698999941406898877532356332576666433456255557504
Q ss_pred CCCC-----CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 6999-----99999999999999914678740256667765334444531223467619999875259999989999999
Q 004503 192 LDGN-----PDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAF 266 (748)
Q Consensus 192 ~~~~-----~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai 266 (748)
+++ ....+..+++|.+||||||||||||+.+++.+.+|++.|.+.||||+|+|++||+|+ ..+|..+++++||
T Consensus 81 -~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~~i~~Ai 158 (649)
T 3i6s_A 81 -KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF-NEGTFTSDLIAAM 158 (649)
T ss_dssp -HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEE-TTEECHHHHHHHH
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCC-CCCCCHHHHHHHH
T ss_conf -76422345666577998889985899999986877768663344667546787888899983347-8898899999999
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEE
Q ss_conf 99775796099971389999972008989999866169599990179999998655789844997023445530222563
Q 004503 267 DAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKT 346 (748)
Q Consensus 267 ~~A~~dgvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~ 346 (748)
+||+++|+||||||||+....+..+++..+++++.++|++||+||||+|+...++++.+||+|+|||++.||.|...+.+
T Consensus 159 ~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~l 238 (649)
T 3i6s_A 159 DQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238 (649)
T ss_dssp HHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEE
T ss_pred HHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf 99997699799958766776420269999999998499489995888899878557889946899665115530368992
Q ss_pred CCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCC----HHHHHHHCC
Q ss_conf 8981895456412799997132696556556777855557667999998874--3359999538886----124643057
Q 004503 347 GNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKV--KGKLVYCKLGTWG----ADSVIKGIG 420 (748)
Q Consensus 347 ~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~--~gkivi~~~~~~~----~~~~~~~~G 420 (748)
++++++.|.+++........+|++|... ...|.+..+++..+ +|||++| +++.+ +..+++++|
T Consensus 239 gng~~~~g~sl~~~~~~~~~~plv~~~~----------~~~C~~~~l~~~~vdl~GkIvlc-~~g~~~~~~k~~~~~~~G 307 (649)
T 3i6s_A 239 GNGLKIRGWSLFPARAFVRDSPVIYNKT----------LSDCSSEELLSQVENPENTIVIC-DDNGDFSDQMRIITRARL 307 (649)
T ss_dssp TTSCEEEEECCCSSCBCEEEEEEECCTT----------TTTCCCHHHHTTSSSGGGCEEEE-CCCSCHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEECCC----------CCCCCCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHCC
T ss_conf 7985786564256766676035686466----------44356554565421348848999-279861888888897558
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEE--ECCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 149999316763321022212899705552889998841899649998330343--149900145889999999999889
Q 004503 421 GVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVK--VRAPFIASFSSRGPNPGSKHLLKP 498 (748)
Q Consensus 421 a~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~--~~~~~~a~fSS~GP~~~~~~~lKP 498 (748)
+.|+|++|+........+.+|+++|+.+++..|++|++++.+++++|.+..+.. .+++.++.||||||+...+++|||
T Consensus 308 a~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKP 387 (649)
T 3i6s_A 308 KAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKP 387 (649)
T ss_dssp SEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSC
T ss_pred CEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43789724754335656768779974889799999986589845999625325046778852236898998778886588
Q ss_pred CEECCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 17707996793114875667777997-66561352366541568877889867119999999999998603878877899
Q 004503 499 DIAAPGIDILASYTLMKSLTGLKGDT-QYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVN 577 (748)
Q Consensus 499 DI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~ 577 (748)
||+|||++|+++|+....+.....+. +...|..+||||||||||||++|||||+||+|+|++||++||+||++++..+.
T Consensus 388 DI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~ 467 (649)
T 3i6s_A 388 DILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRK 467 (649)
T ss_dssp CEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSS
T ss_pred EEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 59958888685357987766556654466640324664200687889999998757899999999999630635467898
Q ss_pred CC---------CCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 97---------85678877679246589862320793247875311899876303641875421--24788998888789
Q 004503 578 NE---------AEFAYGAGQVNPQKAVSPGLVYDMDDMSYIQFLCHEGYNGSSLAVLVGSKSIN--CTSLIPGVGYDALN 646 (748)
Q Consensus 578 ~~---------~~~~~G~G~in~~~A~~~glv~~~~~~dy~~~lc~~g~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ln 646 (748)
++ ++++||+|+||+.+|++||||||+..+||+.|||++||+..+|+.|+++ +++ |+. .+.| ||
T Consensus 468 ~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~-~~~~~C~~----~~~~-lN 541 (649)
T 3i6s_A 468 PIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARS-SASHNCSN----PSAD-LN 541 (649)
T ss_dssp BCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTT-TSCC-CCC----CCCC-CC
T ss_pred CCCCCCCCCCCCCCCCCEEEECHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC-CCCCCCCC----CHHH-CC
T ss_conf 421356677577677980554799965956324477306788641479982222256358-77677888----6423-47
Q ss_pred CCCEEEEE-CCCCCEEE--EEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEECCCCCCE
Q ss_conf 78536520-36995036--9999999973899822899984899808999548244314883799999999604899971
Q 004503 647 YPTMQVSL-KSNGELTT--AIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQV 723 (748)
Q Consensus 647 yps~~~~~-~~~~~~~~--~t~~~tvtn~g~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~ 723 (748)
||||++.+ +. ....+ ++|+|||||||+..++|++++++|.|++|+|+|.+|+|++.+|+++|+|||+......+.+
T Consensus 542 yPs~~~~~~~~-~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~ 620 (649)
T 3i6s_A 542 YPSFIALYSIE-GNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSR 620 (649)
T ss_dssp CSSEEEEECCS-SCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CC
T ss_pred CCCEEEECCCC-CCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCEEEEECCEEEEECCCCEEEEEEEEEECCCCCCCE
T ss_conf 88478023568-87754308999889971799858999990699978999889789811898899999999643578865
Q ss_pred EEEEEEEEC--CCCEEEEEEEEEEC
Q ss_conf 899999989--98179927999915
Q 004503 724 LSGSLEWKS--PRHVVRSPIVIYRP 746 (748)
Q Consensus 724 ~~G~i~~~~--~~~~vr~P~~~~~~ 746 (748)
.||+|+|++ +.|.||+||+|++.
T Consensus 621 ~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 621 NVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp CEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEEEEEEEC
T ss_conf 8999999838997699875999971
No 2
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=1.00 E-value=1 Score=979.19 Aligned_cols=615 Identities=48% Similarity=0.873 Sum_probs=548.9
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 5778632388632346-899999839999912789999688789999998876764346677756786247654214699
Q 004503 116 TTRSWDFIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDG 194 (748)
Q Consensus 116 ~~~~~~~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~ 194 (748)
++++|+|+|+++ ..| +..+|+||+|||||||||++||+|.|+++++++.+|+|.|+.+.+|. ||+|++++|+|. .+
T Consensus 1 tt~s~~flGl~~-~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~-~n~k~ig~~~~~-~~ 77 (621)
T 3vta_A 1 TTRSWDFLGFPL-TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR-CNRKIIGARSYH-IG 77 (621)
T ss_dssp CCSHHHHTTCCT-TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC-CCSSEEEEEECC-CS
T ss_pred CCCCHHHCCCCC-CCCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEECC-CC
T ss_conf 988856769972-213447898997999993588999965628998876532356322588766-676443356334-68
Q ss_pred C-CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9-999999999999999146787402566677653344445312234676199998752599999899999999977579
Q 004503 195 N-PDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAIHDG 273 (748)
Q Consensus 195 ~-~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~A~~dg 273 (748)
. ..+.+..+++|++||||||||||||+.+.+.+..|.+.|.++||||+|+|++||+|+ ..+|..+++++||++|+++|
T Consensus 78 ~~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~di~~a~~~a~~~g 156 (621)
T 3vta_A 78 RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW-NDGCSDTDILAAYDDAIADG 156 (621)
T ss_dssp SSCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEE-TTEECHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEC-CCCCCHHHHHHHHHHHHHHC
T ss_conf 86677787898878927789999985767777663454666678888999799999114-89997799999999999729
Q ss_pred CCEEEECCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEE
Q ss_conf 60999713899-99972008989999866169599990179999998655789844997023445530222563898189
Q 004503 274 VNVISISIGGA-TEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSV 352 (748)
Q Consensus 274 vdVIn~S~G~~-~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 352 (748)
+||||||||+. ...+..+++++++++++++||++|+||||+|+...++++.+||+++|++++.+|.|...+.++++..+
T Consensus 157 ~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~ 236 (621)
T 3vta_A 157 VDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSF 236 (621)
T ss_dssp CSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEE
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEE
T ss_conf 98998267788777767759999999998789889994788888874047788874168876036540224773257405
Q ss_pred EEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-HHHHHHHCCCEEEEEEECCC
Q ss_conf 54564127999971326965565567778555576679999988743359999538886-12464305714999931676
Q 004503 353 SGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWG-ADSVIKGIGGVGIIVGSEQF 431 (748)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~-~~~~~~~~Ga~g~i~~~~~~ 431 (748)
.+.++..+. ...+++++..+......+......|.+..+++..++|||++| ++... +..+.+..|+.+++++++..
T Consensus 237 ~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~-~~~~~~~~~~~~~~Ga~gvi~~~~~~ 313 (621)
T 3vta_A 237 QGVSINTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC-EASFGPHEFFKSLDGAAGVLMTSNTR 313 (621)
T ss_dssp EEBCCCCSC--CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEEC-SSCCCHHHHHHHHTTCSEEEEECSCC
T ss_pred EEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCHHHHHHHHCCEEEEEEEECCC
T ss_conf 423503578--864321025534545556543232466665531323309998-14777167766515604999973477
Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEE-ECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEEC
Q ss_conf 3321022212899705552889998841899649998330343-149900145889999999999889177079967931
Q 004503 432 LDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVK-VRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILAS 510 (748)
Q Consensus 432 ~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~-~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 510 (748)
. ..+.+.+|+..++..++..+..|+.....+.+.+....+.. ..++.++.||||||+...++++||||+|||++|+++
T Consensus 314 ~-~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa 392 (621)
T 3vta_A 314 D-YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAA 392 (621)
T ss_dssp S-SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEE
T ss_pred C-CCCCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCEEEE
T ss_conf 7-666645425997799999999998626775068722257505788724440577988877872066303688656754
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 14875667777997665613523665415688778898671199999999999986038788778999785678877679
Q 004503 511 YTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVN 590 (748)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in 590 (748)
|+....... +.+...|..+||||||||||||++|||||+||+|+|++||++||+||++++..+.+..+++||+|+||
T Consensus 393 ~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~~~~~~~~GaG~v~ 469 (621)
T 3vta_A 393 WPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVN 469 (621)
T ss_dssp CCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTCTTTHHHHTTCBCC
T ss_pred CCCCCCCCC---CCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
T ss_conf 476656667---67887505743766421546668999997789999999999998548766666787870312777438
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEE
Q ss_conf 24658986232079324787531189987630364187542124788998888789785365203699503699999999
Q 004503 591 PQKAVSPGLVYDMDDMSYIQFLCHEGYNGSSLAVLVGSKSINCTSLIPGVGYDALNYPTMQVSLKSNGELTTAIFRRRVT 670 (748)
Q Consensus 591 ~~~A~~~glv~~~~~~dy~~~lc~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~lnyps~~~~~~~~~~~~~~t~~~tvt 670 (748)
+.+|++||||||+..+||+.|||++||+..+++.+++. ...|.........| ||||||++.+.... ..+++++||||
T Consensus 470 ~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-lN~pS~~v~~~~~~-~~~~t~~rtvt 546 (621)
T 3vta_A 470 PLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD-YSACTSGNTGRVWD-LNYPSFGLSVSPSQ-TFNQYFNRTLT 546 (621)
T ss_dssp HHHHSCCSEECCCCGGGCC------------------------------CGGG-SCCSSEEEECCSSC-CEEEEEEEEEE
T ss_pred HHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHEEEECC-CCCCCCCCCCCCCC-CCCCCEEEECCCCC-CEEEEEEEEEE
T ss_conf 77824897684146310233102457870220344036-43267778575210-46661798816998-44799999998
Q ss_pred ECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEEEC
Q ss_conf 7389982289998489980899954824431488379999999960489997189999998998179927999915
Q 004503 671 NVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWKSPRHVVRSPIVIYRP 746 (748)
Q Consensus 671 n~g~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~vr~P~~~~~~ 746 (748)
|||....||++++++|+|++|+|+|.+|+|++.+|+++|+|||+.. ..+.+.||+|+|+|+.|.|||||+|+..
T Consensus 547 nvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w~d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 547 SVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITITSL 620 (621)
T ss_dssp ECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEEECSSCCCEEEEEEECC
T ss_pred CCCCCCEEEEEEEECCCCCEEEEECCEEEECCCCCEEEEEEEEEEC--CCCCEEEEEEEEECCCEEEEECEEEEEE
T ss_conf 1499973899999889996799952989975799689999999945--7785689999998599999928899876
No 3
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=1.00 E-value=1 Score=718.96 Aligned_cols=528 Identities=23% Similarity=0.313 Sum_probs=410.8
Q ss_pred CCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCC-CCCCEEEEE
Q ss_conf 2388632346-899999839999912789999688789999998876764346677-----------756-786247654
Q 004503 122 FIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFAN-----------FSG-CNNKLIGAR 188 (748)
Q Consensus 122 ~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~-----------f~~-~n~ki~g~~ 188 (748)
+++++ .+| .+.+|+||+|||||||||++||+|.+ +..|++.|..+.+ +.. ||+|+++++
T Consensus 3 ~i~~~--~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~ 74 (926)
T 1xf1_A 3 PSQVK--TLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYH 74 (926)
T ss_dssp TTCCH--HHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEE
T ss_pred CCCCH--HHHHCCCCCCCCEEEEEECCCCCCCHHHCC------CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 22657--888606998996999990288999976869------9887542134333024444567666654476032035
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CCHHHHHHHH
Q ss_conf 21469999999999999999991467874025666776533444453122346761999987525999--9989999999
Q 004503 189 YFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG--CSDMDILAAF 266 (748)
Q Consensus 189 ~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai 266 (748)
+|. ++. .+ .|+.||||||||||||+...+.+. .+.+.||||+|+|++||+|+ ..+ +..+++++||
T Consensus 75 ~~~-~~~------~~-~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~-~~g~~~~~~~i~~Ai 141 (926)
T 1xf1_A 75 DYS-KDG------KT-AVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEI-VNGLADYARNYAQAI 141 (926)
T ss_dssp ESC-CCS------CC-CCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCC-CSCHHHHHHHHHHHH
T ss_pred CCC-CCC------CC-CCCCCCHHHHHHHHHCCCCCCCCC----CCCEEEECCCCEEEEEEEEC-CCCCCCCHHHHHHHH
T ss_conf 466-688------99-898985789989986788667666----77468978888899999213-899887289999999
Q ss_pred HHHHHCCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC-------------CCCCCC--CCCCEE
Q ss_conf 9977579609997138999--99720089899998661695999901799999-------------986557--898449
Q 004503 267 DAAIHDGVNVISISIGGAT--EDYASDTISVGAFHALKKGIVTVASAGNDGPK-------------WGTVSN--HAPWLV 329 (748)
Q Consensus 267 ~~A~~dgvdVIn~S~G~~~--~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~-------------~~~~~~--~~p~vi 329 (748)
++|+++|+||||||||+.. .....++++.+++++.++|++||+||||+|+. ..++.+ .+||+|
T Consensus 142 ~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vi 221 (926)
T 1xf1_A 142 RDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTL 221 (926)
T ss_dssp HHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSE
T ss_pred HHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
T ss_conf 99998199199979878988765556089999999974896899928988876775555434578742323766688659
Q ss_pred EEECCCCCCCEEEEEEE-CCCEEEEEEEEECCC--CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 97023445530222563-898189545641279--999713269655655677785555766799999887433599995
Q 004503 330 TVAASGIDRQFKSKVKT-GNGRSVSGVGVNTFD--PKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCK 406 (748)
Q Consensus 330 tVga~~~~~~~~~~~~~-~~g~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~ 406 (748)
+|||++.++.+...+.+ +++....+.++.... ..+..+++++.+. .|.+..+ .+++|||++|
T Consensus 222 tVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gkivl~- 286 (926)
T 1xf1_A 222 TVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGKIALI- 286 (926)
T ss_dssp EEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTSEEEE-
T ss_pred EEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEEECCC------------CCCCCCH--HHCCCEEEEE-
T ss_conf 990565665442116998378764036877237778886578898888------------8783306--5438809999-
Q ss_pred CCCCC----HHHHHHHCCCEEEEEEECCCCC----CCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEE--EC
Q ss_conf 38886----1246430571499993167633----21022212899705552889998841899649998330343--14
Q 004503 407 LGTWG----ADSVIKGIGGVGIIVGSEQFLD----VAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVK--VR 476 (748)
Q Consensus 407 ~~~~~----~~~~~~~~Ga~g~i~~~~~~~~----~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~--~~ 476 (748)
+|+.+ +..+++.+|+.|+|++++.... +.....+|+.+|+.+++.+|.. .+..++++....... ..
T Consensus 287 ~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~ 362 (926)
T 1xf1_A 287 ERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTAS 362 (926)
T ss_dssp ECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSS
T ss_pred ECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHH----CCCEEEEECCCCEECCCCC
T ss_conf 899888999999999679719999836777730015766423179985899999972----8945998556511214677
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH----HC
Q ss_conf 99001458899999999998891770799679311487566777799766561352366541568877889867----11
Q 004503 477 APFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVK----SF 552 (748)
Q Consensus 477 ~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~ 552 (748)
.+.++.||||||+. ++++||||+|||++|+++++. +.|..+||||||||||||++|||+ +.
T Consensus 363 ~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~ 427 (926)
T 1xf1_A 363 GTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQ 427 (926)
T ss_dssp CSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHS
T ss_pred CCEECCCCCCCCCC--CCCCCCEEECCCCCEEEECCC-------------CCCEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 66550236789898--886073398899887801169-------------960563764056789999999999987611
Q ss_pred CCCCCHHH----HHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 99999999----99998603878877899--9785678877679246589862320793247875311899876303641
Q 004503 553 HPSWSPAA----IKSAIMTTAKPMSQRVN--NEAEFAYGAGQVNPQKAVSPGLVYDMDDMSYIQFLCHEGYNGSSLAVLV 626 (748)
Q Consensus 553 ~P~~sp~~----Ik~~L~~TA~~~~~~~~--~~~~~~~G~G~in~~~A~~~glv~~~~~~dy~~~lc~~g~~~~~~~~~~ 626 (748)
||+|+|++ ||++||+||++++..+. ..++++||+|+||+.+|+++.+ |||..++...+
T Consensus 428 ~P~~sp~~~~~~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~----- 491 (926)
T 1xf1_A 428 YPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSK----- 491 (926)
T ss_dssp SSSSHHHHHHHHHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSC-----
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCCCE-----------EEECCCCCCCE-----
T ss_conf 88878778899999999853877656888731771032777029989658876-----------99768987541-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCC--EEEEEEEEC--CCCEEEEEECCEEEECC
Q ss_conf 87542124788998888789785365203699503699999999738998--228999848--99808999548244314
Q 004503 627 GSKSINCTSLIPGVGYDALNYPTMQVSLKSNGELTTAIFRRRVTNVGPRL--SIYNATIKA--PKGVNITVKPMSLSFSR 702 (748)
Q Consensus 627 g~~~~~~~~~~~~~~~~~lnyps~~~~~~~~~~~~~~t~~~tvtn~g~~~--~ty~~~v~~--~~g~~v~v~p~~~~~~~ 702 (748)
+.+..+. . +.+++|||||+|+.+ .+|++++.. |.+..+++.|..|.|..
T Consensus 492 -----------------------i~l~~~~---~-~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~ 544 (926)
T 1xf1_A 492 -----------------------VHLNNVS---D-KFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETS 544 (926)
T ss_dssp -----------------------EEEEEEC---S-EEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred -----------------------EECCCCC---C-CEEEEEEEEEECCCCEEEEEEEEEEECCCCCCEEEECCCEEEECC
T ss_conf -----------------------4526567---6-089999999827996269999999843678834885355357526
Q ss_pred -------CCCEEEEEEEEEEEC--------CCCCCEEEEEEEEE--CCCC-EEEEEEEEEECC
Q ss_conf -------883799999999604--------89997189999998--9981-799279999159
Q 004503 703 -------TSHKRSFSVVVKAKP--------MSSTQVLSGSLEWK--SPRH-VVRSPIVIYRPQ 747 (748)
Q Consensus 703 -------~g~~~~~~vt~~~~~--------~~~~~~~~G~i~~~--~~~~-~vr~P~~~~~~~ 747 (748)
+||+++|+|||++.. .+.+.++||+|+|+ ++.| .||+||+++.+|
T Consensus 545 ~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 545 WQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp CEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred CCEEEECCCCEEEEEEEEECCCCCHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEEECC
T ss_conf 875998999989999999747655010134668717999999995899877899666999637
No 4
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=1.00 E-value=1 Score=508.77 Aligned_cols=364 Identities=31% Similarity=0.447 Sum_probs=288.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECHHHHHHH-----------HCCC
Q ss_conf 88489999688899961446779999999836988888641899853303389999199989986-----------1599
Q 004503 33 QKNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYTESFNAFAAKLSNDEAQKL-----------QRMD 101 (748)
Q Consensus 33 ~~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L-----------~~~p 101 (748)
..-.|||.|++. ...+...++++++ +.++.++|+ .|+||+++++.+++++| +++|
T Consensus 34 ~~~~~iV~~~~~-----~~~~~~~~~~~~~--------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 99 (539)
T 3afg_A 34 QEVSTIIMFDNQ-----ADKEKAVEILDFL--------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLS 99 (539)
T ss_dssp CEEEEEEEESSH-----HHHHHHHHHHHHH--------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCT
T ss_pred CCEEEEEEECCC-----CCHHHHHHHHHHC--------CCEEEEEEE-EEEEEEEEECHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 842799998997-----8989999999866--------974899861-13179999389999998741134442010389
Q ss_pred CEEEEECCCEECCCCCCC---CCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 848998182302365778---632388632346-8999998399999127899996887899999988767643466777
Q 004503 102 RVLSVFPNRYHQLHTTRS---WDFIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANF 177 (748)
Q Consensus 102 ~V~~v~~~~~~~~~~~~~---~~~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f 177 (748)
+|++|+++..+++..... +....+....+| .+++|+||+|||||||||++||+|.
T Consensus 100 ~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~--------------------- 158 (539)
T 3afg_A 100 GVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQ--------------------- 158 (539)
T ss_dssp TEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGT---------------------
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCHHHH---------------------
T ss_conf 70499835300134764467732011475767735789998289999258778995784---------------------
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-
Q ss_conf 5678624765421469999999999999999991467874025666776533444453122346761999987525999-
Q 004503 178 SGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG- 256 (748)
Q Consensus 178 ~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g- 256 (748)
.++++.++|. ++ ...+.|++||||||||||+|+..+ ..|.+.||||+|+|+++|+|+ ..+
T Consensus 159 ----~~i~~~~d~~-~~------~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~-~~g~ 219 (539)
T 3afg_A 159 ----GKVIGWVDFV-NG------KTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLN-GQGS 219 (539)
T ss_dssp ----TTEEEEEETT-TC------CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSC-TTSE
T ss_pred ----CCEEEEEECC-CC------CCCCCCCCCCHHHHHHHHHCCCCC-------CCCCEEEECCCCEEEEEEEEC-CCCC
T ss_conf ----8886458787-89------899889998888999998586756-------779889988899899997356-9998
Q ss_pred CCHHHHHHHHHHHHHC----CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC--CCCCCCCEEE
Q ss_conf 9989999999997757----960999713899999720089899998661695999901799999986--5578984499
Q 004503 257 CSDMDILAAFDAAIHD----GVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGT--VSNHAPWLVT 330 (748)
Q Consensus 257 ~~~~~i~~ai~~A~~d----gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~--~~~~~p~vit 330 (748)
++.++++++|+||+++ |++|||||||........+.+..++.++.++|+++|+||||+|+...+ .+..++++|+
T Consensus 220 ~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vit 299 (539)
T 3afg_A 220 GSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVIT 299 (539)
T ss_dssp EEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 68899999999998632532985899588888888643399999999986698899978888997776447766785589
Q ss_pred EECCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 70234455302225638981895456412799997132696556556777855557667999998874335999953888
Q 004503 331 VAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTW 410 (748)
Q Consensus 331 Vga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~ 410 (748)
|||++.+
T Consensus 300 VgA~~~~------------------------------------------------------------------------- 306 (539)
T 3afg_A 300 VGAVDKY------------------------------------------------------------------------- 306 (539)
T ss_dssp EEEECTT-------------------------------------------------------------------------
T ss_pred EEEECCC-------------------------------------------------------------------------
T ss_conf 9654177-------------------------------------------------------------------------
Q ss_pred CHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCC
Q ss_conf 61246430571499993167633210222128997055528899988418996499983303431499001458899999
Q 004503 411 GADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNP 490 (748)
Q Consensus 411 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~ 490 (748)
+.++.||+|||+.
T Consensus 307 -------------------------------------------------------------------~~~a~fSs~Gp~~ 319 (539)
T 3afg_A 307 -------------------------------------------------------------------DVITDFSSRGPTA 319 (539)
T ss_dssp -------------------------------------------------------------------SCBCSSSCCCCCT
T ss_pred -------------------------------------------------------------------CCCCCCCCCCCCC
T ss_conf -------------------------------------------------------------------6534334778887
Q ss_pred CCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 99999889177079967931148756677779976656135236654156887788986711999999999999860387
Q 004503 491 GSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK 570 (748)
Q Consensus 491 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 570 (748)
++++||||+|||++|++++.....+. +.....|..++|||||||||||++|||+|+||+|+|++||++|++||+
T Consensus 320 --~~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~ 393 (539)
T 3afg_A 320 --DNRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETAD 393 (539)
T ss_dssp --TCBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSB
T ss_pred --CCCCCCCEECCCCCEEEECCCCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf --77876667558688882036887778----887665546676478889999999999987799999999999996293
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8877899978567887767924658986
Q 004503 571 PMSQRVNNEAEFAYGAGQVNPQKAVSPG 598 (748)
Q Consensus 571 ~~~~~~~~~~~~~~G~G~in~~~A~~~g 598 (748)
+++..+. .+..||+|+||+.+|++..
T Consensus 394 ~~~~~~~--~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 394 IVKPDEI--ADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp CSSGGGC--SBTTTBTCBCCHHHHHTGG
T ss_pred CCCCCCC--CCCCCCCCCCCHHHHHHHC
T ss_conf 4788899--8567557811799996100
No 5
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=1.00 E-value=1 Score=486.64 Aligned_cols=334 Identities=20% Similarity=0.235 Sum_probs=256.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECHHHHHHHHCCCCEEEEECCCEEC
Q ss_conf 84899996888999614467799999998369888886418998533033899991999899861599848998182302
Q 004503 34 KNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYTESFNAFAAKLSNDEAQKLQRMDRVLSVFPNRYHQ 113 (748)
Q Consensus 34 ~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~ 113 (748)
++.|||.|++... ....+.+.+.+.+.... .....++++.|++.|+||+++++.+++++|+++|+|++|+|+..+.
T Consensus 75 pg~YIV~lk~~~~--~~~~~~~~~~l~a~~~~--~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~ 150 (692)
T 2p4e_P 75 PGTYVVVLKEETH--LSQSERTARRLQAQAAR--RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 150 (692)
T ss_dssp EEEEEEEECTTCC--HHHHHHHHHHHHHHHHH--TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred CCCEEEEECCCCC--HHHHHHHHHHHHHHHHH--CCCCCCEEEEEECCCCEEEEEECHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9828999899999--79999999999877765--0565540457503351899996999999987289964998354245
Q ss_pred CCCCCCCCCCCCCCC----CCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 365778632388632----346-899999839999912789999688789999998876764346677756786247654
Q 004503 114 LHTTRSWDFIGLPQT----ARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGAR 188 (748)
Q Consensus 114 ~~~~~~~~~~~~~~~----~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~ 188 (748)
.+ ..+|.+..+... ..| .+.+|+||+|+|||||||++||+|.+... |. +|.
T Consensus 151 ~~-~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~~---------- 206 (692)
T 2p4e_P 151 AQ-SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DFE---------- 206 (692)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CC-CCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCEE------EC-------CCC----------
T ss_conf 67-8885253246665553223448899985899976888888943437557------42-------665----------
Q ss_pred ECC-CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCHHHHHHHH
Q ss_conf 214-69999999999999999991467874025666776533444453122346761999987525999-9989999999
Q 004503 189 YFK-LDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAF 266 (748)
Q Consensus 189 ~~~-~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai 266 (748)
.+. .++. .....+.|.+||||||||||+|+. .||||+|+|+++|+++ ..| ++.+++++||
T Consensus 207 ~~~d~dg~---~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~-~~G~g~~s~ii~aI 268 (692)
T 2p4e_P 207 NVPEEDGT---RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLN-CQGKGTVSGTLIGL 268 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCC---CCCCCCCCCCCCHHHHHHHHHCCC--------------CCCCCCCEEEEEEEEC-CCCCCCHHHHHHHH
T ss_conf 46577787---466788787874877546762277--------------7648899899998446-89987889999999
Q ss_pred HHHHHC------CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CCCCCCCEEEEECCCCCCC
Q ss_conf 997757------960999713899999720089899998661695999901799999986-5578984499702344553
Q 004503 267 DAAIHD------GVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGT-VSNHAPWLVTVAASGIDRQ 339 (748)
Q Consensus 267 ~~A~~d------gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~-~~~~~p~vitVga~~~~~~ 339 (748)
+|++++ +++|||||||+.... .+..++.++.++|+++|+||||+|..... .++.+|++|+|||++.+..
T Consensus 269 ~~a~~~~~~~~~g~~VINmSlGg~~s~----~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~ 344 (692)
T 2p4e_P 269 EFIRKSQLVQPVGPLVVLLPLAGGYSR----VLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQ 344 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCH----HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 999863220467864897147888768----9999999999789979997788777777637656898899998759998
Q ss_pred EEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHC
Q ss_conf 02225638981895456412799997132696556556777855557667999998874335999953888612464305
Q 004503 340 FKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGI 419 (748)
Q Consensus 340 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~ 419 (748)
.
T Consensus 345 --------------------------------------------------------------~----------------- 345 (692)
T 2p4e_P 345 --------------------------------------------------------------P----------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------C-----------------
T ss_conf --------------------------------------------------------------0-----------------
Q ss_pred CCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 71499993167633210222128997055528899988418996499983303431499001458899999999998891
Q 004503 420 GGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPD 499 (748)
Q Consensus 420 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 499 (748)
...-+.||+|||. ||
T Consensus 346 ---------------------------------------------------------a~~ss~fSn~G~~--------vD 360 (692)
T 2p4e_P 346 ---------------------------------------------------------VTLGTLGTNFGRC--------VD 360 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------CCCCCCCCCCCCC--------EE
T ss_conf ---------------------------------------------------------4434666788984--------04
Q ss_pred EECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 7707996793114875667777997665613523665415688778898671199999999999986038788
Q 004503 500 IAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPM 572 (748)
Q Consensus 500 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~ 572 (748)
|+|||++|+++++... ..|..++|||||||||||++|||++++|+|+|++||++|++||.+.
T Consensus 361 I~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 361 LFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 422 (692)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEECCCCEEEECCCCC-----------CCEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 8855776786326899-----------8667606257999999999999998788999999999999756456
No 6
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=1.00 E-value=1 Score=471.52 Aligned_cols=354 Identities=23% Similarity=0.312 Sum_probs=275.4
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECHHHHHHHHC-CCCEEEEECCCE
Q ss_conf 8848999968889996144677999999983698888864189985330338999919998998615-998489981823
Q 004503 33 QKNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYTESFNAFAAKLSNDEAQKLQR-MDRVLSVFPNRY 111 (748)
Q Consensus 33 ~~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~-~p~V~~v~~~~~ 111 (748)
.++.|||.+++ .+...+++++ .+.+++++| ..+++|+++++.+++++|++ +|+|++|+++..
T Consensus 43 ~~~~yiv~~~~--------~~~~~~~~~~--------~g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~ 105 (471)
T 3t41_A 43 EELYYSVEYKN--------TATFNKLVKK--------KSLNVVYNI-PELHVAQIKMTKMHANALANYKNDIKYINATCS 105 (471)
T ss_dssp CCEEEEEEESC--------HHHHHHHHHH--------HTCEEEEEE-GGGTEEEEEECHHHHHHHHTCTTTEEEEEECCS
T ss_pred CCEEEEEECCC--------HHHHHHHHHH--------CCCEEEEEC-CCCCEEEEEECHHHHHHHHHCCCCCCEEEECCE
T ss_conf 83489997377--------8999999975--------897899961-773479999499999999846999738976656
Q ss_pred ECCCCC-------------CCCCCCCCCCC-CCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 023657-------------78632388632-346-899999839999912789999688789999998876764346677
Q 004503 112 HQLHTT-------------RSWDFIGLPQT-ARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFAN 176 (748)
Q Consensus 112 ~~~~~~-------------~~~~~~~~~~~-~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~ 176 (748)
++++.. .+|.+..+... .+| .+.+|+||+|||||||||++||+|.+.. +.+. .+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~----~~ 174 (471)
T 3t41_A 106 TCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS----KN 174 (471)
T ss_dssp SCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC----EE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCEEEEEECCCCCCCHHHHCCC-------CCCC----CC
T ss_conf 212455545567788532013267651075777852489998189999399898995575376-------6677----53
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 75678624765421469999999999999999991467874025666776533444453122346761999987525999
Q 004503 177 FSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG 256 (748)
Q Consensus 177 f~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g 256 (748)
|. ....|.........+...+.|..||||||||||+|++. +.||||+|+|+.+|+++ ...
T Consensus 175 ~~-------~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~-~~~ 234 (471)
T 3t41_A 175 LV-------PLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFG-SKK 234 (471)
T ss_dssp CC-------CTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCS-SSC
T ss_pred CC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCC------------EEEECCCCEEEEEEECC-CCC
T ss_conf 45-------57874577734478877776777850056530003786------------06888998599998126-898
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC-C------------CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC---
Q ss_conf 99899999999977579609997138999-9------------9720089899998661695999901799999986---
Q 004503 257 CSDMDILAAFDAAIHDGVNVISISIGGAT-E------------DYASDTISVGAFHALKKGIVTVASAGNDGPKWGT--- 320 (748)
Q Consensus 257 ~~~~~i~~ai~~A~~dgvdVIn~S~G~~~-~------------~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~--- 320 (748)
+..+++++||+|+++++++|||||||... . ....+.+..++..+.++|+++|+||||+|.....
T Consensus 235 ~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~ 314 (471)
T 3t41_A 235 TELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQK 314 (471)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 76899999999998679989996898787775445665432220267999999999984997899974899867776433
Q ss_pred ---------------CCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf ---------------55789844997023445530222563898189545641279999713269655655677785555
Q 004503 321 ---------------VSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSA 385 (748)
Q Consensus 321 ---------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (748)
.++.+|++|+|||++.+
T Consensus 315 ~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~~------------------------------------------------ 346 (471)
T 3t41_A 315 LKLQREYQGNGEVKDVPASMDNVVTVGSTDQK------------------------------------------------ 346 (471)
T ss_dssp HHHTTTCCSSSEEEEETTTSTTEEEEEEECTT------------------------------------------------
T ss_pred CCCCCCCCCCCCEEECCCCCCCEEEEEEECCC------------------------------------------------
T ss_conf 45566656677501166557974999951798------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEE
Q ss_conf 76679999988743359999538886124643057149999316763321022212899705552889998841899649
Q 004503 386 RFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSA 465 (748)
Q Consensus 386 ~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~ 465 (748)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCC----------------------EEECCCCCCCCCCCCCC
Q ss_conf 99833034314990014588999999999988917707996----------------------79311487566777799
Q 004503 466 VIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGID----------------------ILASYTLMKSLTGLKGD 523 (748)
Q Consensus 466 ~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~----------------------I~sa~~~~~~~~~~~~~ 523 (748)
+.++.||++||+. |||+|||++ |+++++.
T Consensus 347 ------------~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~---------- 397 (471)
T 3t41_A 347 ------------SNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN---------- 397 (471)
T ss_dssp ------------SSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT----------
T ss_pred ------------CCCCCCCCCCCCC-------CEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC----------
T ss_conf ------------9888766899999-------86995588733334456543345556667506832799----------
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7665613523665415688778898671199-99999999998603878877899978567887767924658986
Q 004503 524 TQYSKFTLMSGTSMACPHIAGVVAYVKSFHP-SWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVSPG 598 (748)
Q Consensus 524 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A~~~g 598 (748)
+.|..++|||||||||||++|||+|++| +|+|.+||++|++||.+... . .+..||+|+||+.+|++..
T Consensus 398 ---~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~--~--~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 398 ---GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN--K--PFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp ---SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC--C--CHHHHTTCBBCHHHHTTTT
T ss_pred ---CCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC--C--CCCCCCCCHHCHHHHHHHH
T ss_conf ---9878525468878999999999998616789999999999984877778--9--9676556743799999987
No 7
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=1.00 E-value=1 Score=466.57 Aligned_cols=341 Identities=25% Similarity=0.350 Sum_probs=273.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECHHHHHHHHCCCCEEEEECCCEEC
Q ss_conf 84899996888999614467799999998369888886418998533033899991999899861599848998182302
Q 004503 34 KNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYTESFNAFAAKLSNDEAQKLQRMDRVLSVFPNRYHQ 113 (748)
Q Consensus 34 ~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~ 113 (748)
+.+|||.|++... .++++++ .+.+++++|. .+++|+++++.+++++|+++|+|++|++++.++
T Consensus 2 ~~~~iV~~~~~~~--------~~~~~~~--------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~ 64 (395)
T 2z2z_A 2 TIRVIVSVDKAKF--------NPHEVLG--------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 64 (395)
T ss_dssp EEEEEEEECTTTC--------CHHHHHH--------TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CEEEEEEECCCCC--------HHHHHHH--------CCCEEEEEEC-CCCEEEEEECHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf 6789999799864--------7999997--------6987999953-678899997999999997299954999711102
Q ss_pred CCCC--------------CCCCCCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3657--------------786323886323468999998--399999127899996887899999988767643466777
Q 004503 114 LHTT--------------RSWDFIGLPQTARRNLKIESD--IVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANF 177 (748)
Q Consensus 114 ~~~~--------------~~~~~~~~~~~~~w~~~~G~g--V~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f 177 (748)
++.. .+|.+..+....+|...+|+| |+|||||||||++||+|.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~~G~g~~v~VaViDtGid~~Hp~l~~~------------------- 125 (395)
T 2z2z_A 65 LLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAAN------------------- 125 (395)
T ss_dssp ECCEECC------CCSCCCCHHHHHTTCGGGGGTCSSCCTTCEEEEEESCBCTTCTTTGGG-------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHC-------------------
T ss_conf 4578875444556754567856465698888863379999579999768989899668606-------------------
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-
Q ss_conf 5678624765421469999999999999999991467874025666776533444453122346761999987525999-
Q 004503 178 SGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG- 256 (748)
Q Consensus 178 ~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g- 256 (748)
+..+++|..+.. . .+...+.|+.||||||||||+|.. ++ .| +.||||+|+|+.+|+++ ..+
T Consensus 126 ------~~~~~~~~~~~~-~-~~~~~~~d~~gHGT~vAgiia~~~-n~-------~g-~~GvAp~a~l~~~kv~~-~~g~ 187 (395)
T 2z2z_A 126 ------IAWCVSTLRGKV-S-TKLRDCADQNGHGTHVIGTIAALN-ND-------IG-VVGVAPGVQIYSVRVLD-ARGS 187 (395)
T ss_dssp ------EEEEEECGGGCC-B-CCHHHHBCSSSHHHHHHHHHHCCC-SS-------SS-CCCSSTTCEEEEEECSC-TTSE
T ss_pred ------CCCCCCCCCCCC-C-CCCCCCCCCCCCHHHHHHHHHEEC-CC-------CC-EEEECCCCEEEEEEEEC-CCCC
T ss_conf ------366765668866-6-788888899988899999997505-89-------85-48778999899999736-9998
Q ss_pred CCHHHHHHHHHHHHHC--------------------CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 9989999999997757--------------------96099971389999972008989999866169599990179999
Q 004503 257 CSDMDILAAFDAAIHD--------------------GVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGP 316 (748)
Q Consensus 257 ~~~~~i~~ai~~A~~d--------------------gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~ 316 (748)
++.+++++||+||+++ +++|||||||.... ...+..++.++.++|+++|+||||+|.
T Consensus 188 ~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~ 264 (395)
T 2z2z_A 188 GSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASGNEGA 264 (395)
T ss_dssp EEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSSCC
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 15999999999998575444444454432356667898699945887888---989999999998789889997999989
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99865578984499702344553022256389818954564127999971326965565567778555576679999988
Q 004503 317 KWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPK 396 (748)
Q Consensus 317 ~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 396 (748)
....+++..|++|+|||++.+
T Consensus 265 ~~~~~Pa~~~~vi~Vga~~~~----------------------------------------------------------- 285 (395)
T 2z2z_A 265 PSPSYPAAYPEVIAVGAIDSN----------------------------------------------------------- 285 (395)
T ss_dssp SSCCBTTTSTTEEEEEEECTT-----------------------------------------------------------
T ss_pred CCCCCCCCCCCEEEEEEECCC-----------------------------------------------------------
T ss_conf 888886678987999872699-----------------------------------------------------------
Q ss_pred CCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEEC
Q ss_conf 74335999953888612464305714999931676332102221289970555288999884189964999833034314
Q 004503 397 KVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVR 476 (748)
Q Consensus 397 ~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~ 476 (748)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC--
Q ss_conf 990014588999999999988917707996793114875667777997665613523665415688778898671199--
Q 004503 477 APFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHP-- 554 (748)
Q Consensus 477 ~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-- 554 (748)
+.++.||+||| +|+|||++|+++++. +.|..++|||||||||||++|||++++|
T Consensus 286 -~~~a~fS~~G~----------~v~APG~~i~s~~~~-------------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~ 341 (395)
T 2z2z_A 286 -DNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQK 341 (395)
T ss_dssp -SCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCCCCC----------CEEECCCCEEEECCC-------------CCEEECCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -98886458999----------878678981654489-------------965832778998999999999999728644
Q ss_pred -----------CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------9999999999860387887789997856788776792465898
Q 004503 555 -----------SWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVSP 597 (748)
Q Consensus 555 -----------~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A~~~ 597 (748)
.|++.+||++|++||+++...+. +..+|+|+||+.+|++.
T Consensus 342 ~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g~---~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 342 YGKILPVGTFDDISKNTVRGILHITADDLGPTGW---DADYGYGVVRAALAVQA 392 (395)
T ss_dssp HSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSSS---BTTTBTCBCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC---CCCCCCCEECHHHHHHH
T ss_conf 5654444454689999999999963615688887---87734766579999999
No 8
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=1.00 E-value=1 Score=458.52 Aligned_cols=374 Identities=23% Similarity=0.245 Sum_probs=273.3
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECH----HHHHHHH--CCCCE
Q ss_conf 02688489999688899961446779999999836988888641899853303389999199----9899861--59984
Q 004503 30 EENQKNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYTESFNAFAAKLSN----DEAQKLQ--RMDRV 103 (748)
Q Consensus 30 ~~~~~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~----~~i~~L~--~~p~V 103 (748)
....+++|||.+++. ...+++++.+ +.++.+++ ..+++++++++. +.+++|+ ++|+|
T Consensus 27 ~~~~~~~~IV~~k~~--------~~~~~~~~~~--------g~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V 89 (671)
T 1r6v_A 27 GEYTEGKILVGYNDR--------SEVDKIVKAV--------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGI 89 (671)
T ss_dssp TSBCTTEEEEEESSH--------HHHHHHHHHH--------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSE
T ss_pred CCCCCCCEEEEECCC--------CCHHHHHHHC--------CCEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 765773389998998--------6799999866--------98699970-777689999687489999999985568980
Q ss_pred EEEECCCEECCCC------------------------------CCCCCCCCCCCCCC-CCCCCCCCCEEEEEECCCCCCC
Q ss_conf 8998182302365------------------------------77863238863234-6899999839999912789999
Q 004503 104 LSVFPNRYHQLHT------------------------------TRSWDFIGLPQTAR-RNLKIESDIVVGLMDTGITPES 152 (748)
Q Consensus 104 ~~v~~~~~~~~~~------------------------------~~~~~~~~~~~~~~-w~~~~G~gV~VaVIDtGId~~H 152 (748)
++|+|+..+++.. ..+|.+..+....+ |...+|+||+|||||||||++|
T Consensus 90 ~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~~tG~gV~VAVIDTGVd~~H 169 (671)
T 1r6v_A 90 RYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTH 169 (671)
T ss_dssp EEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTS
T ss_pred EEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 69943727884046556764321112223345665455642234577610069764223102899978999958989888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 68878999999887676434667775678624765421469999999999999999991467874025666776533444
Q 004503 153 ESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLA 232 (748)
Q Consensus 153 p~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~ 232 (748)
|+|.+.- +. ++++ +. +... + ...+..|.+||||||||||||..+ +
T Consensus 170 pdL~~~~-------~~-----g~~~------------~~-~~~~-p-~~~d~~d~~gHGThVAGiIAa~~n-g------- 214 (671)
T 1r6v_A 170 PDLEGQV-------IA-----GYRP------------AF-DEEL-P-AGTDSSYGGSAGTHVAGTIAAKKD-G------- 214 (671)
T ss_dssp GGGTTTB-------CC-----EEEG------------GG-TEEE-C-TTCBCCTTCSHHHHHHHHHHCCCS-S-------
T ss_pred CCCCCCE-------EE-----CCCC------------CC-CCCC-C-CCCCCCCCCCCCHHHHHHHHCCCC-C-------
T ss_conf 4101557-------71-----4545------------67-8757-8-888876678843212016341578-8-------
Q ss_pred CCCCCCCCCCCEEEEEEEEECC------CC-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 4531223467619999875259------99-9989999999997757960999713899999720089899998661695
Q 004503 233 WGAARGAVPNARVAAYKVCWVS------SG-CSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGI 305 (748)
Q Consensus 233 ~g~~~GvAP~A~l~~~kv~~~~------~g-~~~~~i~~ai~~A~~dgvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv 305 (748)
.| +.||||+|+|+++|+++ . .+ .....+++||+||++++++|||||||+.. ....+..++.++.++|+
T Consensus 215 ~g-v~GVAP~A~I~~vkv~~-~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~~Gv 289 (671)
T 1r6v_A 215 KG-IVGVAPGAKIMPIVIFD-DPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGV 289 (671)
T ss_dssp SS-CCCSCTTSEEEEEESBC-CHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTC
T ss_pred CC-EEEECCCCEEEEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC---CCHHHHHHHHHHHHCCC
T ss_conf 86-17787899899999106-765567887468899999999999869979995787887---78999999999986898
Q ss_pred EEEEECCCCCCCC-CCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 9999017999999-865578984499702344553022256389818954564127999971326965565567778555
Q 004503 306 VTVASAGNDGPKW-GTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDS 384 (748)
Q Consensus 306 ~vV~aAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (748)
++|+||||+|... ..+++..|++|+|||.+.+..
T Consensus 290 lvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~--------------------------------------------- 324 (671)
T 1r6v_A 290 VMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG--------------------------------------------- 324 (671)
T ss_dssp EEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT---------------------------------------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC---------------------------------------------
T ss_conf 89995788887777667555787599998867998---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCE
Q ss_conf 57667999998874335999953888612464305714999931676332102221289970555288999884189964
Q 004503 385 ARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPS 464 (748)
Q Consensus 385 ~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~ 464 (748)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCC-----CCCCCCCCCCEEECCCCCHH
Q ss_conf 9998330343149900145889999999999889177079967931148756677-----77997665613523665415
Q 004503 465 AVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTG-----LKGDTQYSKFTLMSGTSMAC 539 (748)
Q Consensus 465 ~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAa 539 (748)
...++.||++||. +||+|||++|+++++....... .......+.|..++||||||
T Consensus 325 ------------~~~~a~fSn~G~~--------vdv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAA 384 (671)
T 1r6v_A 325 ------------TFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAA 384 (671)
T ss_dssp ------------EEEECSSSCCCTT--------EEEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHH
T ss_pred ------------CEEECCCCCCCCC--------EEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH
T ss_conf ------------4123564689997--------26995687778515787765545665421125898648764763788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH
Q ss_conf 688778898671199999999999986038788778999785678877679246589862320793247
Q 004503 540 PHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVSPGLVYDMDDMSY 608 (748)
Q Consensus 540 P~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A~~~glv~~~~~~dy 608 (748)
|||||++|||+|++|+|+|.+||++|++||+++...+. +..+|+|+||+.+|++..|..+....+|
T Consensus 385 P~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~---d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 385 PHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW---DHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---BTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC---CCCCCCCEECHHHHHHHHCCCCCCCCCE
T ss_conf 99999999999778899999999999975837788887---7785543518999820223788886416
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=1.00 E-value=1 Score=450.63 Aligned_cols=385 Identities=20% Similarity=0.290 Sum_probs=276.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 77863238863234689999983999991278999968878999999887676434667775678624765421469999
Q 004503 117 TRSWDFIGLPQTARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNP 196 (748)
Q Consensus 117 ~~~~~~~~~~~~~~w~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~ 196 (748)
..+|.+..+....+|... |+||+|+|||||||++||+|.+. .+ ..+++..+
T Consensus 3 ~~~W~l~~i~~~~~w~~~-g~gv~VaViDtGvd~~Hp~l~~~-------~~------------------~~~~~~~~--- 53 (441)
T 1y9z_A 3 TTPWGQTFVGATVLSDSQ-AGNRTICIIDSGYDRSHNDLNAN-------NV------------------TGTNNSGT--- 53 (441)
T ss_dssp CCCHHHHHTTCSSSCCTT-GGGCEEEEEESCCCTTSTTTTTS-------EE------------------EECCCTTS---
T ss_pred CCCCCHHHCCHHHHHHCC-CCCCEEEEECCCCCCCCHHHHCC-------CC------------------CCCCCCCC---
T ss_conf 788771126955664257-99838999828879999567457-------33------------------37655788---
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEEEEEECCCC-CCHHHHHHHHHHHHHC-
Q ss_conf 99999999999999146787402566677653344445312234676--1999987525999-9989999999997757-
Q 004503 197 DPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNA--RVAAYKVCWVSSG-CSDMDILAAFDAAIHD- 272 (748)
Q Consensus 197 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~~g-~~~~~i~~ai~~A~~d- 272 (748)
.+...+.|..||||||||||++..+. .| +.||||+| +|+.+|+++ ..+ ++.+++++||+||+++
T Consensus 54 --~~~~~~~d~~gHGT~vAgiia~~~~~--------~g-~~GvAP~a~~~l~~~kv~~-~~g~~~~~~~~~ai~~a~~~~ 121 (441)
T 1y9z_A 54 --GNWYQPGNNNAHGTHVAGTIAAIANN--------EG-VVGVMPNQNANIHIVKVFN-EAGWGYSSSLVAAIDTCVNSG 121 (441)
T ss_dssp --CCTTCCCSSCCHHHHHHHHHHCCCSS--------SB-CCCSSCSSCSEEEEEECEE-TTEECCSSCHHHHHHHHHHTT
T ss_pred --CCCCCCCCCCCCHHHHHHHHHCCCCC--------CC-CEEECCCCCCEEEEEEEEC-CCCCCCHHHHHHHHHHHHHHC
T ss_conf --87788888998577999998526588--------97-3686478888799999747-899848999999999999725
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCE--
Q ss_conf 960999713899999720089899998661695999901799999986557898449970234455302225638981--
Q 004503 273 GVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGR-- 350 (748)
Q Consensus 273 gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~-- 350 (748)
++||||||||.... ...+..++.++.++|+++|+||||+|.....+++..+++|+|||++.+.....+...+...
T Consensus 122 g~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv 198 (441)
T 1y9z_A 122 GANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEI 198 (441)
T ss_dssp CCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEE
T ss_pred CCCEEEECCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 98389958887898---889999999999789989996699989888787779986999988799987764568996489
Q ss_pred ---------------------EEEEEEEECCCC--CCCEEE--EEECCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEE
Q ss_conf ---------------------895456412799--997132--69655655677785555766799--999887433599
Q 004503 351 ---------------------SVSGVGVNTFDP--KEKFYP--LVSGADVAKNSESRDSARFCFDD--SLDPKKVKGKLV 403 (748)
Q Consensus 351 ---------------------~~~g~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~C~~~--~~~~~~~~gkiv 403 (748)
++.|.+++.... ....++ +.|...... .........|... .++..+++|||+
T Consensus 199 ~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~C~~~~~~~~~~~~~gkiv 277 (441)
T 1y9z_A 199 SGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPIN-ASATGALAECTVNGTSFSCGNMANKIC 277 (441)
T ss_dssp EEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCC-CEEEEEEEEEEEETTEEECCCCTTEEE
T ss_pred EECCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHCCCCCCCCCCCCCCCCCEE
T ss_conf 9666876625667886311010156201345657664445677645443224-422100010456655555777655589
Q ss_pred EEECCCCC---------HHHHHHHCCCEEEEEEECCCC-C--------CCCCCCCCEEEECCCCHHHHHHHHHCCCCCEE
Q ss_conf 99538886---------124643057149999316763-3--------21022212899705552889998841899649
Q 004503 404 YCKLGTWG---------ADSVIKGIGGVGIIVGSEQFL-D--------VAQIYMAPGTMVNVTDGDNITDYIHSTRSPSA 465 (748)
Q Consensus 404 i~~~~~~~---------~~~~~~~~Ga~g~i~~~~~~~-~--------~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~ 465 (748)
+| +|+.+ +..+++++|+.++|++++... . ......+|.+.|+.++|..|++|+... +
T Consensus 278 l~-~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~ 352 (441)
T 1y9z_A 278 LV-ERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T 352 (441)
T ss_dssp EE-ECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----E
T ss_pred EE-ECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCC----C
T ss_conf 99-625667665307999999996597499999478765544321245566765547997288899999874687----5
Q ss_pred EEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHH
Q ss_conf 99833034314990014588999999999988917707996793114875667777997665613523665415688778
Q 004503 466 VIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGV 545 (748)
Q Consensus 466 ~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 545 (748)
+ + ++... ..|..+||||||||||||+
T Consensus 353 t---------------------------------~--------~~~~~-------------~~y~~~sGTSmAaP~VAG~ 378 (441)
T 1y9z_A 353 T---------------------------------V--------SNQGN-------------QDYEYYNGTSMATPHVSGV 378 (441)
T ss_dssp E---------------------------------E--------EEEEE-------------ESEEEECSHHHHHHHHHHH
T ss_pred C---------------------------------C--------CCCCC-------------CCCEEECCCCCCCCCCCHH
T ss_conf 1---------------------------------2--------35568-------------8752453641577531048
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCC
Q ss_conf 89867119999999999998603878877899978567887767924658986232079324787531189987
Q 004503 546 VAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVSPGLVYDMDDMSYIQFLCHEGYNG 619 (748)
Q Consensus 546 aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A~~~glv~~~~~~dy~~~lc~~g~~~ 619 (748)
+|||+|+||+|+|++||++||+||++++..+. +.+||+|+||+.+|+ +|+.|||+.++..
T Consensus 379 aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~---~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~~ 438 (441)
T 1y9z_A 379 ATLVWSYHPECSASQVRAALNATADDLSVAGR---DNQTGYGMINAVAAK-----------AYLDESCTGPTDP 438 (441)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC---BTTTBTCBCCHHHHH-----------HHHHHCTTCC---
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCHHHCCCCC---CCCCCCCCCCHHHHH-----------HHHHHHHCCCCCC
T ss_conf 99998777789999999999850600046898---423366516799999-----------9988631679999
No 10
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=424.57 Aligned_cols=413 Identities=23% Similarity=0.240 Sum_probs=280.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 83999991278999968878999999887676434667775678624765421469999999999999999991467874
Q 004503 138 DIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSST 217 (748)
Q Consensus 138 gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 217 (748)
+|+|||||||+++.|++..-. ..|+...+.+ .| .+.+.+..++.+++. ......|++|||||||||
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg-~F---~D~v~~~~n~~Ddgd----~~~~v~D~~GHGThVAGI 279 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETR-NV---DDFLSISVNVHDEGN----VLEVVGMSSPHGTHVSSI 279 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCC-EE---SSSCEEEEEEEGGGT----EEEEEECCCHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCC------CCCCCCCCCC-CC---CCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHH
T ss_conf 989999959798886556445------5654423355-43---344578775579987----424588999967999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CCHHHHHHHHHHHHH-----CCCCEEEECCCCCCCCCCH
Q ss_conf 025666776533444453122346761999987525999--998999999999775-----7960999713899999720
Q 004503 218 LAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG--CSDMDILAAFDAAIH-----DGVNVISISIGGATEDYAS 290 (748)
Q Consensus 218 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~A~~-----dgvdVIn~S~G~~~~~~~~ 290 (748)
|||.. ++ .+ +.||||+|+|+.+|+++...+ ....+++++|.+|++ .+++|||||||........
T Consensus 280 IAa~~-N~-------~g-~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~~~~~ 350 (1354)
T 3lxu_X 280 ASGNH-SS-------RD-VDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNS 350 (1354)
T ss_dssp HCCCC-SS-------SS-SCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCSCSSC
T ss_pred HHCCC-CC-------CC-CEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 96677-87-------87-25565798799999426777765671799999999998776337965998487668888764
Q ss_pred HHHHHHHHHHH-HCCCEEEEECCCCCCCCCCC--CC--CCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEECCCCCCC
Q ss_conf 08989999866-16959999017999999865--57--898449970234455302225638981895456412799997
Q 004503 291 DTISVGAFHAL-KKGIVTVASAGNDGPKWGTV--SN--HAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEK 365 (748)
Q Consensus 291 ~~i~~a~~~a~-~~Gv~vV~aAGN~G~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 365 (748)
+.+..++.++. ++|+++|+||||+|+...++ ++ .++++|+|||++.+......
T Consensus 351 ~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~---------------------- 408 (1354)
T 3lxu_X 351 GRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE---------------------- 408 (1354)
T ss_dssp CHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------------
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC----------------------
T ss_conf 7999999999983795899808887788886578410258853899766178874322----------------------
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 13269655655677785555766799999887433599995388861246430571499993167633210222128997
Q 004503 366 FYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMV 445 (748)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 445 (748)
|... +
T Consensus 409 -----ys~~-------------------------~--------------------------------------------- 413 (1354)
T 3lxu_X 409 -----YAMR-------------------------E--------------------------------------------- 413 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CCCC-------------------------C---------------------------------------------
T ss_conf -----2345-------------------------6---------------------------------------------
Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 05552889998841899649998330343149900145889999999999889177079967931148756677779976
Q 004503 446 NVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTGLKGDTQ 525 (748)
Q Consensus 446 ~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 525 (748)
...+.++.||||||+. ++.+||||+|||++|+++.....
T Consensus 414 -----------------------------~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~---------- 452 (1354)
T 3lxu_X 414 -----------------------------KLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM---------- 452 (1354)
T ss_dssp ---------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC---------------------
T ss_pred -----------------------------CCCCCCCCCCCCCCCC--CCCCCCEEEECCCEEEEEECCCC----------
T ss_conf -----------------------------7777401225889875--67876159935732787305899----------
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 65613523665415688778898671----19999999999998603878877899978567887767924658986232
Q 004503 526 YSKFTLMSGTSMACPHIAGVVAYVKS----FHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVSPGLVY 601 (748)
Q Consensus 526 ~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A~~~glv~ 601 (748)
+.|..++|||||||||||++|||++ ++|+|+|.+||.+|++||++.+.. .++.||+|+||+.+|++..+.+
T Consensus 453 -~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~----~~~~~G~GlLDa~~AV~~a~~~ 527 (1354)
T 3lxu_X 453 -SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV----DPFAQGHGLLNVEKAFEHLTEH 527 (1354)
T ss_dssp -----CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS----CTTTSSSSBCCHHHHHHHHHTT
T ss_pred -CCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC----CCCCCCCCEECHHHHHHHHHHC
T ss_conf -96524787778899999999999976686489989999999999748568899----9445468785799999999865
Q ss_pred ECCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEE---CCCCCE-
Q ss_conf 0793247875311899876303641875421247889988887897853652036995036999999997---389982-
Q 004503 602 DMDDMSYIQFLCHEGYNGSSLAVLVGSKSINCTSLIPGVGYDALNYPTMQVSLKSNGELTTAIFRRRVTN---VGPRLS- 677 (748)
Q Consensus 602 ~~~~~dy~~~lc~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~lnyps~~~~~~~~~~~~~~t~~~tvtn---~g~~~~- 677 (748)
+....+++.|+|..+.....- ..... ..... ...++++++-+..| ..+...
T Consensus 528 ~~~p~~~v~f~~~v~~~~~rg-IylR~----------------~~~~~--------~~~~tv~V~p~f~~~~~~~~~~~i 582 (1354)
T 3lxu_X 528 RQSKDNMLRFSVRVGNNADKG-IHLRQ----------------GVQRN--------SIDYNVYIEPIFYNDKEADPKDKF 582 (1354)
T ss_dssp TTCGGGGEEEEEEETTTTBSS-EEECS----------------SCCCS--------CEEEEEEEEEEESSCSCSSSTTCS
T ss_pred CCCCCCCEEEEEEECCCCCCC-EEEEC----------------CCCCC--------CEEEEEEEEEEECCCCCCCHHHCC
T ss_conf 889766348999855778873-48713----------------23478--------617999996641576657721225
Q ss_pred --EEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEEC-----CCCEEEEEEEEEEC
Q ss_conf --2899984899808999548244314883799999999604899971899999989-----98179927999915
Q 004503 678 --IYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQVLSGSLEWKS-----PRHVVRSPIVIYRP 746 (748)
Q Consensus 678 --ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~vr~P~~~~~~ 746 (748)
.-++.+.... --|+ .|..|.+ .++.++|.|+|++.... .+.+++.|...| .....|+|+.|..+
T Consensus 583 ~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~L~-~G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P 653 (1354)
T 3lxu_X 583 NFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTGLQ-PGVHSAVIRAYDTDCVQKGSLFEIPVTVVQP 653 (1354)
T ss_dssp CCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGGCC-SEEEEEEEEEEESSCTTSCCSEEEEEEEEEC
T ss_pred CEEEEEEEECCC-CCEE-CCCCEEE--CCCCCEEEEEECCCCCC-CCCEEEEEEEEECCCCCCCCEEEEEEEEEEE
T ss_conf 657999986379-8140-6562354--27982589998788899-8631689999974786668638855799854
Done!