Query         004503
Match_columns 748
No_of_seqs    330 out of 3083
Neff          7.9 
Searched_HMMs 13730
Date          Tue Mar 26 18:09:41 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/004503.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1811-1815//hhsearch_scop/004503hhsearch_scop 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1r6va_ c.41.1.1 (A:) Fervidol 100.0       0       0  445.1  26.9  363   33-600    30-442 (671)
  2 d1v6ca_ c.41.1.1 (A:) Alkaline 100.0       0       0  400.2  23.8  407  118-614     4-433 (435)
  3 d1dbia_ c.41.1.1 (A:) Thermost 100.0       0       0  372.2  24.0  268  117-596    10-279 (280)
  4 d1thma_ c.41.1.1 (A:) Thermita 100.0       0       0  364.6  23.1  268  117-596    10-278 (279)
  5 d1r0re_ c.41.1.1 (E:) Subtilis 100.0       0       0  365.9  21.5  265  118-596     4-274 (274)
  6 d1gcia_ c.41.1.1 (A:) Subtilis 100.0       0       0  360.7  22.7  265  117-596     3-269 (269)
  7 d1to2e_ c.41.1.1 (E:) Subtilis 100.0       0       0  362.0  21.5  267  118-597     4-276 (281)
  8 d2ixta1 c.41.1.1 (A:1-309) Sph 100.0       0       0  333.1  24.7  291  118-591     6-309 (309)
  9 d2pwaa1 c.41.1.1 (A:1-279) Pro 100.0       0       0  330.0  18.3  254  116-591     4-271 (279)
 10 d1wmda2 c.41.1.1 (A:1-318) Alk 100.0       0       0  318.2  25.5  299  122-596     7-317 (318)
 11 d1p8ja2 c.41.1.1 (A:109-442) F 100.0 1.4E-45       0  309.4  19.4  287  116-597    10-329 (334)
 12 d2id4a2 c.41.1.1 (A:122-460) K 100.0 1.4E-45       0  309.3  16.0  288  117-598    18-335 (339)
 13 d1t1ga_ c.41.1.2 (A:) Serine-c 100.0 1.1E-36 7.8E-41  251.9   2.6  306  132-596    19-353 (357)
 14 d1ga6a_ c.41.1.2 (A:) Serine-c 100.0 1.9E-34 1.4E-38  237.2   6.0  307  130-596    18-362 (369)
 15 d1scjb_ d.58.3.2 (B:) Subtilis  98.3 1.3E-06 9.2E-11   57.1   8.4   70   34-114     1-70  (71)
 16 d1v5ib1 d.58.3.2 (B:1-72) Prot  98.1 9.8E-06 7.2E-10   51.4   8.7   68   34-111     2-72  (72)
 17 d1w8oa1 b.1.18.2 (A:403-505) S  96.4   0.021 1.5E-06   29.8  12.3   92  645-744     6-98  (103)
 18 d3bi1a2 c.8.4.1 (A:118-350) Gl  86.3    0.31 2.3E-05   22.2   3.5   36  395-430    76-114 (233)
 19 d1de4c2 c.8.4.1 (C:190-382) Tr  84.5    0.36 2.6E-05   21.9   3.1   36  395-430    58-96  (193)
 20 d1grwa_ b.1.11.2 (A:) Major sp  57.1     3.5 0.00026   15.4   9.6   52  662-716    24-75  (124)
 21 d1wica_ b.1.11.2 (A:) MSP doma  40.5     6.4 0.00047   13.7   8.0   64  663-729    37-102 (152)
 22 d1m1sa_ b.1.11.2 (A:) WR4 {Nem  33.1     8.3 0.00061   13.0   9.1   50  665-717    20-69  (109)
 23 d1rowa_ b.1.11.2 (A:) SSP-19 {  30.6     9.2 0.00067   12.7   8.5   50  664-716    16-65  (107)

No 1  
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}
Probab=100.00  E-value=0  Score=445.11  Aligned_cols=363  Identities=23%  Similarity=0.228  Sum_probs=264.1

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECHHH----HH--HHHCCCCEEEE
Q ss_conf             8848999968889996144677999999983698888864189985330338999919998----99--86159984899
Q 004503           33 QKNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYTESFNAFAAKLSNDE----AQ--KLQRMDRVLSV  106 (748)
Q Consensus        33 ~~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~----i~--~L~~~p~V~~v  106 (748)
                      .+++|||.+++        ....+++++++        +.++++.+ ..++.+.++++...    .+  ++..+|+|++|
T Consensus        30 ~~~~~iV~~k~--------~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v   92 (671)
T d1r6va_          30 TEGKILVGYND--------RSEVDKIVKAV--------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYV   92 (671)
T ss_dssp             CTTEEEEEESS--------HHHHHHHHHHH--------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEE
T ss_pred             CCCEEEEEECC--------CCCHHHHHHHC--------CCEEEEEE-CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             79749999898--------53799999864--------87799870-465259997472048899999987368885598


Q ss_pred             ECCCEECCCCC------------------------------CCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             81823023657------------------------------786323886323-46899999839999912789999688
Q 004503          107 FPNRYHQLHTT------------------------------RSWDFIGLPQTA-RRNLKIESDIVVGLMDTGITPESESF  155 (748)
Q Consensus       107 ~~~~~~~~~~~------------------------------~~~~~~~~~~~~-~w~~~~G~gV~VaVIDtGId~~Hp~f  155 (748)
                      +|+..+++...                              .+|.+..+.... .|...+|+||+|||||||||++||+|
T Consensus        93 ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl  172 (671)
T d1r6va_          93 EPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDL  172 (671)
T ss_dssp             ECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGG
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCEEEEECCCCCCCCHHH
T ss_conf             76616750232345778510111343444566676764445676852459538788448999978999838838799546


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             78999999887676434667775678624765421469999999999999999991467874025666776533444453
Q 004503          156 KDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGA  235 (748)
Q Consensus       156 ~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~  235 (748)
                      .+.-            ..+.+|.            . +...  ....++.|..+|||||||||+|+.+.        .| 
T Consensus       173 ~~~~------------~~~~~~~------------~-~~~~--~~~~~~~d~~gHGT~VAGiiaa~~~~--------~g-  216 (671)
T d1r6va_         173 EGQV------------IAGYRPA------------F-DEEL--PAGTDSSYGGSAGTHVAGTIAAKKDG--------KG-  216 (671)
T ss_dssp             TTTB------------CCEEEGG------------G-TEEE--CTTCBCCTTCSHHHHHHHHHHCCCSS--------SS-
T ss_pred             CCCC------------CCCCCCC------------C-CCCC--CCCCCCCCCCCCCCCCCCEEEEECCC--------CC-
T ss_conf             3776------------5686654------------4-5778--88875765589975500122440344--------41-


Q ss_pred             CCCCCCCCEEEEEEEEECC------CC-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             1223467619999875259------99-9989999999997757960999713899999720089899998661695999
Q 004503          236 ARGAVPNARVAAYKVCWVS------SG-CSDMDILAAFDAAIHDGVNVISISIGGATEDYASDTISVGAFHALKKGIVTV  308 (748)
Q Consensus       236 ~~GvAP~A~l~~~kv~~~~------~g-~~~~~i~~ai~~A~~dgvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV  308 (748)
                      +.||||+|+|+++|+++ .      .+ ...+.++++|+||++++++|||||||+..   ....+..++..+.++|+++|
T Consensus       217 ~~GvAp~a~l~~~rv~~-~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv~vV  292 (671)
T d1r6va_         217 IVGVAPGAKIMPIVIFD-DPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMV  292 (671)
T ss_dssp             CCCSCTTSEEEEEESBC-CHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEE
T ss_pred             EEEECCCCEEEEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC---CCHHHHHHHHHHHHCCCCEE
T ss_conf             45306763688887304-556668777354799999988998579829953344666---78377799999986037399


Q ss_pred             EECCCCCCCC-CCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             9017999999-865578984499702344553022256389818954564127999971326965565567778555576
Q 004503          309 ASAGNDGPKW-GTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARF  387 (748)
Q Consensus       309 ~aAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (748)
                      +||||++... ...++..|++|+|||.+.+..                                                
T Consensus       293 ~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~------------------------------------------------  324 (671)
T d1r6va_         293 VSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------------------  324 (671)
T ss_dssp             EECCSCSSSCCCCBTTTSTTCEEEEEEEEETT------------------------------------------------
T ss_pred             EEEECCCCCCCCCCCCCCCCEEEEEEECCCCC------------------------------------------------
T ss_conf             99825898766658766884489988637898------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEE
Q ss_conf             67999998874335999953888612464305714999931676332102221289970555288999884189964999
Q 004503          388 CFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVI  467 (748)
Q Consensus       388 C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i  467 (748)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (671)
T d1r6va_         325 --------------------------------------------------------------------------------  324 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCC-----CCCCCCCCCCEEECCCCCHHHHH
Q ss_conf             8330343149900145889999999999889177079967931148756677-----77997665613523665415688
Q 004503          468 YKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSLTG-----LKGDTQYSKFTLMSGTSMACPHI  542 (748)
Q Consensus       468 ~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~V  542 (748)
                               ...++.||+|||.        |||+|||++|+++++.......     .......+.|..++|||||||||
T Consensus       325 ---------~~~~a~fS~~g~~--------~dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~V  387 (671)
T d1r6va_         325 ---------TFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHV  387 (671)
T ss_dssp             ---------EEEECSSSCCCTT--------EEEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHH
T ss_pred             ---------CCEEEECCCCCCC--------CEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf             ---------5114431689997--------14973577857534788754445666542125898066425777878999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             7788986711999999999999860387887789997856788776792465898623
Q 004503          543 AGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAVSPGLV  600 (748)
Q Consensus       543 AG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A~~~glv  600 (748)
                      ||++|||+|++|+|+|.+||++|++||++++..+.   +..||||+||+.+|++..+.
T Consensus       388 aG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---~~~~G~G~vna~~Av~~~~~  442 (671)
T d1r6va_         388 TGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW---DHDTGYGLVKLDAALQGPLP  442 (671)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---BTTTBTCBCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHCHHHHHHCCCC
T ss_conf             99999999888899999999999952915788898---88743274179999517578


No 2  
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=100.00  E-value=0  Score=400.18  Aligned_cols=407  Identities=18%  Similarity=0.203  Sum_probs=241.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             78632388632346899999839999912789999688789999998876764346677756786247654214699999
Q 004503          118 RSWDFIGLPQTARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPD  197 (748)
Q Consensus       118 ~~~~~~~~~~~~~w~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~~  197 (748)
                      .+|.+..+....+|. .+|+||+|+|||||||++||+|.+.                         ++..+++...    
T Consensus         4 ~~wg~~~i~a~~~~~-~~G~gv~VaviDtGid~~Hp~~~~~-------------------------~~~~~~~~~~----   53 (435)
T d1v6ca_           4 TPWGQTFVGATVLSD-SQAGNRTICIIDSGYDRSHNDLNAN-------------------------NVTGTNNSGT----   53 (435)
T ss_dssp             CCHHHHHTTGGGSCC-TTGGGCEEEEEESCCCTTSTTTTTS-------------------------EEEECCCTTS----
T ss_pred             CCCCHHHCCCCHHHH-CCCCCCEEEEECCCCCCCCHHHCCC-------------------------EEEEECCCCC----
T ss_conf             870675609263553-6899938999847889999335547-------------------------3311116788----


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEEEEECCCCCCHHHHHHHHHHHHH-CCC
Q ss_conf             99999999999991467874025666776533444453122346--761999987525999998999999999775-796
Q 004503          198 PWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVP--NARVAAYKVCWVSSGCSDMDILAAFDAAIH-DGV  274 (748)
Q Consensus       198 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~~g~~~~~i~~ai~~A~~-dgv  274 (748)
                       .+...+.|++||||||||||||+..+    .|     +.||||  +++|+.+|+++....+...++++||+++++ .++
T Consensus        54 -~~~~~~~d~~gHGThvAgiiag~~~~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~  123 (435)
T d1v6ca_          54 -GNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGA  123 (435)
T ss_dssp             -CCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCC
T ss_pred             -CCCCCCCCCCCCHHHHHHHHHCCCCC----CC-----EEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             -99899899998378999998510789----85-----488852567316530025653321134566677777625654


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEE--
Q ss_conf             099971389999972008989999866169599990179999998655789844997023445530222563898189--
Q 004503          275 NVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSV--  352 (748)
Q Consensus       275 dVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~--  352 (748)
                      +|||+|||....   ...+..++..+.++|+++|+||||+|.....+++.++++|+||+++.+.....+...+....+  
T Consensus       124 ~vin~S~g~~~~---~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~a  200 (435)
T d1v6ca_         124 NVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISG  200 (435)
T ss_dssp             SEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEE
T ss_pred             EEEECCCCCCCC---CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf             488455687878---77887666530365349999335778998636764898627989658998523257898568824


Q ss_pred             EEEEEECCCCCCC-EEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC---HHHHHHHCCCEEEEEE
Q ss_conf             5456412799997-132-6965565567778555576679999988743359999538886---1246430571499993
Q 004503          353 SGVGVNTFDPKEK-FYP-LVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWG---ADSVIKGIGGVGIIVG  427 (748)
Q Consensus       353 ~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~---~~~~~~~~Ga~g~i~~  427 (748)
                      +|..+......+. .+. ........           +     .........+.+ . +..   ...+....+.......
T Consensus       201 pG~~i~st~~~g~~~~~~~~~~~~~~-----------~-----~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~  262 (435)
T d1v6ca_         201 PGEAILSTVTVGEGRLADITIGGQSY-----------F-----SNGVVPHNRLTP-S-GTSYAPAPINASATGALAECTV  262 (435)
T ss_dssp             ECSSEEEECSTTCEEEEEEEETTEEC-----------G-----GGCCEECEEEEE-C-SSSEEECCCCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCEE-----------E-----CCCCCCCCCCCC-C-CCCCCCCCEECCCCCEEEEEEC
T ss_conf             23313564206887412323577221-----------0-----256222452034-6-6523322111133222778722


Q ss_pred             ECCCCCC-CCCCCCCEEEECCC------CHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCC--CCCCCC
Q ss_conf             1676332-10222128997055------52889998841899649998330343149900145889999999--999889
Q 004503          428 SEQFLDV-AQIYMAPGTMVNVT------DGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGS--KHLLKP  498 (748)
Q Consensus       428 ~~~~~~~-~~~~~~p~~~i~~~------dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~--~~~lKP  498 (748)
                      +...... .....++.......      .............               ...+..+++.+|....  ....||
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  327 (435)
T d1v6ca_         263 NGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGA---------------KGIIVYSNSALPGLQNPFLVDANS  327 (435)
T ss_dssp             ETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTC---------------SEEEEECCSSSCSCCCCEEECTTC
T ss_pred             CCCEEECCCCCCCCCEEECCCCCCCCCEEEEECEEECCCCC---------------CCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             77243125423131000114776532114541101104687---------------516986167787767763335677


Q ss_pred             CEECCCCCEEECCCCCCCCC----CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             17707996793114875667----77799766561352366541568877889867119999999999998603878877
Q 004503          499 DIAAPGIDILASYTLMKSLT----GLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQ  574 (748)
Q Consensus       499 DI~APG~~I~sa~~~~~~~~----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~  574 (748)
                      |+.+||..|.++........    ..........|..+||||||||||||++|||+|+||+|+|++||++||+||++++.
T Consensus       328 di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~  407 (435)
T d1v6ca_         328 DITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV  407 (435)
T ss_dssp             CCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             56887778403552000265688622048899872698558998999999999999988899999999999830945589


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHC
Q ss_conf             8999785678877679246589862320793247875311
Q 004503          575 RVNNEAEFAYGAGQVNPQKAVSPGLVYDMDDMSYIQFLCH  614 (748)
Q Consensus       575 ~~~~~~~~~~G~G~in~~~A~~~glv~~~~~~dy~~~lc~  614 (748)
                      .+   .+++||+|+||+.+|+           +|+...|.
T Consensus       408 ~~---~~~~~G~G~vn~~~A~-----------~~l~~~~~  433 (435)
T d1v6ca_         408 AG---RDNQTGYGMINAVAAK-----------AYLDESCT  433 (435)
T ss_dssp             SS---CBTTTBTCBCCHHHHH-----------HHHHHCTT
T ss_pred             CC---CCCCCCCCEECHHHHH-----------HHHHHCCC
T ss_conf             99---8778616466699999-----------99985289


No 3  
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}
Probab=100.00  E-value=0  Score=372.16  Aligned_cols=268  Identities=29%  Similarity=0.366  Sum_probs=221.7

Q ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             778632388632346-8999998399999127899996887899999988767643466777567862476542146999
Q 004503          117 TRSWDFIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGN  195 (748)
Q Consensus       117 ~~~~~~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~  195 (748)
                      .++|.+..+....+| .+.+|+||+|+|||||||++||+|.+                         +++..++|.... 
T Consensus        10 ~~qw~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~-------------------------~~~~~~~~~~~~-   63 (280)
T d1dbia_          10 GYQYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG-------------------------KVIKGYDFVDND-   63 (280)
T ss_dssp             HHCCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTT-------------------------TEEEEEETTTTB-
T ss_pred             CCCCCHHHCCHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCC-------------------------CEEECCCCCCCC-
T ss_conf             466482457989998526899991999976584889933557-------------------------723055566788-


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999991467874025666776533444453122346761999987525999-998999999999775796
Q 004503          196 PDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGV  274 (748)
Q Consensus       196 ~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~A~~dgv  274 (748)
                            ..+.|.++|||||||+|++...+        .+.+.||||+|+|+.+|+++ ..+ +...++++|++|++++++
T Consensus        64 ------~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~ai~~a~~~g~  128 (280)
T d1dbia_          64 ------YDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALD-RNGSGTLSDIADAIIYAADSGA  128 (280)
T ss_dssp             ------SCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCC-TTSCCCHHHHHHHHHHHHHTTC
T ss_pred             ------CCCCCCCCCCCCEEEEEECCCCC--------CCCEEEEECCCEEEEEEEEC-CCCCCCHHHHHHHHHHHHHCCC
T ss_conf             ------75556444553136763112358--------88556785357899999857-9998279999999999997499


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEE
Q ss_conf             09997138999997200898999986616959999017999999865578984499702344553022256389818954
Q 004503          275 NVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSG  354 (748)
Q Consensus       275 dVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g  354 (748)
                      +|||+|||....   .+....+...+.++|+++|+||||+|......+...+++|+|++.+.+                 
T Consensus       129 ~iin~S~g~~~~---~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~-----------------  188 (280)
T d1dbia_         129 EVINLSLGCDCH---TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY-----------------  188 (280)
T ss_dssp             SEEEECCSSCCC---CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-----------------
T ss_pred             CEEECCCCCCCC---CHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCC-----------------
T ss_conf             475314311201---025789999998798799981686689886577789978998551578-----------------


Q ss_pred             EEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             56412799997132696556556777855557667999998874335999953888612464305714999931676332
Q 004503          355 VGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDV  434 (748)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~  434 (748)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (280)
T d1dbia_         189 --------------------------------------------------------------------------------  188 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCC
Q ss_conf             10222128997055528899988418996499983303431499001458899999999998891770799679311487
Q 004503          435 AQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLM  514 (748)
Q Consensus       435 ~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~  514 (748)
                                                                 +.++.||++||.        +|++|||.+|++.... 
T Consensus       189 -------------------------------------------~~~a~~S~~g~~--------~d~~apg~~i~~~~~~-  216 (280)
T d1dbia_         189 -------------------------------------------DRLASFSNYGTW--------VDVVAPGVDIVSTITG-  216 (280)
T ss_dssp             -------------------------------------------SCBCTTBCCSTT--------CCEEEECSSEEEEETT-
T ss_pred             -------------------------------------------CCCCCCCCCCCC--------CCCCCCCCCEECCCCC-
T ss_conf             -------------------------------------------986775799986--------3556774110001257-


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56677779976656135236654156887788986711999999999999860387887789997856788776792465
Q 004503          515 KSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA  594 (748)
Q Consensus       515 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A  594 (748)
                                  ..|..++|||||||+|+|++|||++.  .+++.+||.+|++||+++...     +..+|+|+||+.+|
T Consensus       217 ------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~~-----~~~~G~G~ln~~~A  277 (280)
T d1dbia_         217 ------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISGT-----GTYFKYGRINSYNA  277 (280)
T ss_dssp             ------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTTB-----TTTBSSEECCHHHH
T ss_pred             ------------CCEECCCCCCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCC-----CCCCCCCEECHHHH
T ss_conf             ------------51003578652006899999999578--969999999999857377999-----98177773849887


Q ss_pred             CC
Q ss_conf             89
Q 004503          595 VS  596 (748)
Q Consensus       595 ~~  596 (748)
                      |+
T Consensus       278 l~  279 (280)
T d1dbia_         278 VT  279 (280)
T ss_dssp             HT
T ss_pred             CC
T ss_conf             08


No 4  
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}
Probab=100.00  E-value=0  Score=364.56  Aligned_cols=268  Identities=30%  Similarity=0.413  Sum_probs=222.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             77863238863234689999983999991278999968878999999887676434667775678624765421469999
Q 004503          117 TRSWDFIGLPQTARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNP  196 (748)
Q Consensus       117 ~~~~~~~~~~~~~~w~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~  196 (748)
                      .+.|.+..++...+|...+|+||+|+|||||||++||+|.+                         +++..++|. ++  
T Consensus        10 ~~~w~l~~i~a~~aw~~~tG~Gv~VaViDsGi~~~H~~~~~-------------------------~~~~~~~~~-~~--   61 (279)
T d1thma_          10 SRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAG-------------------------KVVGGWDFV-DN--   61 (279)
T ss_dssp             HHCCHHHHTTHHHHHTTCCCTTCEEEEEESCCCTTCTTTTT-------------------------TEEEEEETT-TT--
T ss_pred             CCCCCHHHCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHCC-------------------------CEECCCCCC-CC--
T ss_conf             68859266998898720589984899985897989944608-------------------------764020222-35--


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999991467874025666776533444453122346761999987525999-9989999999997757960
Q 004503          197 DPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVN  275 (748)
Q Consensus       197 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~A~~dgvd  275 (748)
                          ...+.|..+|||||||+|++...++        ..+.|+||+|+|+.+|++. ..+ +...+++++++++++.+++
T Consensus        62 ----~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~ai~~~~~~~~~  128 (279)
T d1thma_          62 ----DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLD-NSGSGTWTAVANGITYAADQGAK  128 (279)
T ss_dssp             ----BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSC-TTSCCCHHHHHHHHHHHHHTTCS
T ss_pred             ----CCCCCCCCCCCCCCCEEEEECCCCC--------CCCCCCCCCCEEEEEEEEE-CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             ----7644553222333312331014787--------6301457722599999983-58887689999998887652872


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEE
Q ss_conf             99971389999972008989999866169599990179999998655789844997023445530222563898189545
Q 004503          276 VISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGV  355 (748)
Q Consensus       276 VIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~  355 (748)
                      |+|+|||...   .......+...+.++|+++|+|+||+|......+...|++|+|+|.+.+                  
T Consensus       129 i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~------------------  187 (279)
T d1thma_         129 VISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------  187 (279)
T ss_dssp             EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT------------------
T ss_pred             EECCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC------------------
T ss_conf             3214567654---4216899999998367608984446655787643212354434310689------------------


Q ss_pred             EEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             64127999971326965565567778555576679999988743359999538886124643057149999316763321
Q 004503          356 GVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVA  435 (748)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~  435 (748)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T d1thma_         188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCC
Q ss_conf             02221289970555288999884189964999833034314990014588999999999988917707996793114875
Q 004503          436 QIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMK  515 (748)
Q Consensus       436 ~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~  515 (748)
                                                                +.++.||++|++        +||.|||.+|+++.+.  
T Consensus       188 ------------------------------------------~~~~~~S~~G~~--------~di~Apg~~i~~~~~~--  215 (279)
T d1thma_         188 ------------------------------------------DNKSSFSTYGSW--------VDVAAPGSSIYSTYPT--  215 (279)
T ss_dssp             ------------------------------------------SCBCTTCCCCTT--------CCEEEECSSEEEEETT--
T ss_pred             ------------------------------------------CCCCCCCCCCCE--------EEEEEEEECCCCCCCC--
T ss_conf             ------------------------------------------987313579860--------7885522022234676--


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66777799766561352366541568877889867119999999999998603878877899978567887767924658
Q 004503          516 SLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKAV  595 (748)
Q Consensus       516 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A~  595 (748)
                                 +.|..++|||||||+|||++|||+|.+|  ++.+||++|++||+++...     +..+|+|+||+.+|+
T Consensus       216 -----------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g~-----~~~~G~G~vn~~~Av  277 (279)
T d1thma_         216 -----------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGT-----GTYWAKGRVNAYKAV  277 (279)
T ss_dssp             -----------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTTB-----TTTBSSEECCHHHHH
T ss_pred             -----------CCCCCCCCCCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHCCCCCCC-----CCCCEEEEECHHHHH
T ss_conf             -----------5643447764033889999999866796--9999999999627417998-----774450367397863


Q ss_pred             C
Q ss_conf             9
Q 004503          596 S  596 (748)
Q Consensus       596 ~  596 (748)
                      +
T Consensus       278 ~  278 (279)
T d1thma_         278 Q  278 (279)
T ss_dssp             H
T ss_pred             C
T ss_conf             8


No 5  
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}
Probab=100.00  E-value=0  Score=365.86  Aligned_cols=265  Identities=29%  Similarity=0.452  Sum_probs=214.7

Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             78632388632346-89999983999991278999968878999999887676434667775678624765421469999
Q 004503          118 RSWDFIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNP  196 (748)
Q Consensus       118 ~~~~~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~  196 (748)
                      .+|.+..+....+| .+++|+||+|||||||||++||+|+                           +...++|. ++  
T Consensus         4 ~~wgl~~i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~---------------------------~~~~~~~~-~~--   53 (274)
T d1r0re_           4 VPYGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN---------------------------VVGGASFV-AG--   53 (274)
T ss_dssp             CCTHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC---------------------------EEEEEECS-TT--
T ss_pred             CCCCHHHCCHHHHHHCCCCCCCEEEEEECCCCCCCCHHHC---------------------------CCCCCCCC-CC--
T ss_conf             7713444492789976999899199998889799994145---------------------------43776564-89--


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999991467874025666776533444453122346761999987525999-9989999999997757960
Q 004503          197 DPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVN  275 (748)
Q Consensus       197 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~A~~dgvd  275 (748)
                          ...+.|.++|||||||||++....        .+ +.|+||+|+|+.+|+++ ..+ +..++++++++++.+++++
T Consensus        54 ----~~~~~d~~gHGT~vAgii~~~~~~--------~~-~~gvap~a~i~~~~~~~-~~~~~~~~~i~~ai~~a~~~~~~  119 (274)
T d1r0re_          54 ----EAYNTDGNGHGTHVAGTVAALDNT--------TG-VLGVAPSVSLYAVKVLN-SSGSGSYSGIVSGIEWATTNGMD  119 (274)
T ss_dssp             ----CCTTCCSSSHHHHHHHHHHCCSSS--------SB-CCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCS
T ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCCC--------CC-CCCCCCCCEEEEEEEEC-CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             ----998877653343322123333345--------42-23337872899999867-99983789999998778755972


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----CCCCCCCCEEEEECCCCCCCEEEEEEECCCEE
Q ss_conf             99971389999972008989999866169599990179999998----65578984499702344553022256389818
Q 004503          276 VISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWG----TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRS  351 (748)
Q Consensus       276 VIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~  351 (748)
                      |+|+||+.....   ........++.++++++|+||||+|....    ..+...+++|+||+.+.+              
T Consensus       120 i~n~S~~~~~~~---~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--------------  182 (274)
T d1r0re_         120 VINMSLGGASGS---TAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------------  182 (274)
T ss_dssp             EEEECEEBSSCC---HHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT--------------
T ss_pred             EECCCCCCCCCH---HHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCC--------------
T ss_conf             103433322210---234278998852715898612677887776652156669978999768789--------------


Q ss_pred             EEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCC
Q ss_conf             95456412799997132696556556777855557667999998874335999953888612464305714999931676
Q 004503          352 VSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQF  431 (748)
Q Consensus       352 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~  431 (748)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (274)
T d1r0re_         183 --------------------------------------------------------------------------------  182 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECC
Q ss_conf             33210222128997055528899988418996499983303431499001458899999999998891770799679311
Q 004503          432 LDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASY  511 (748)
Q Consensus       432 ~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~  511 (748)
                                                                    +.+++||++||.        |||+|||.+|+++.
T Consensus       183 ----------------------------------------------~~~~~~s~~g~~--------~di~APG~~i~~~~  208 (274)
T d1r0re_         183 ----------------------------------------------SNRASFSSVGAE--------LEVMAPGAGVYSTY  208 (274)
T ss_dssp             ----------------------------------------------SCBCTTCCCSTT--------EEEEEECSSEEEEE
T ss_pred             ----------------------------------------------CCCCCCCCCCCC--------EEEEECCCCCCCCC
T ss_conf             ----------------------------------------------981544578997--------78994577854305


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             48756677779976656135236654156887788986711999999999999860387887789997856788776792
Q 004503          512 TLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNP  591 (748)
Q Consensus       512 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~  591 (748)
                      ..             +.|..++|||||||+|||++|||+|++|+|++.+||.+|++||+++..      +..+|+|+||+
T Consensus       209 ~~-------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ln~  269 (274)
T d1r0re_         209 PT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLINV  269 (274)
T ss_dssp             TT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC------HHHHTTCBCCH
T ss_pred             CC-------------CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC------CCCEECCEECH
T ss_conf             89-------------985860687526788999999999878899999999999954844899------98517480459


Q ss_pred             CCCCC
Q ss_conf             46589
Q 004503          592 QKAVS  596 (748)
Q Consensus       592 ~~A~~  596 (748)
                      .+|++
T Consensus       270 ~~A~~  274 (274)
T d1r0re_         270 EAAAQ  274 (274)
T ss_dssp             HHHTC
T ss_pred             HHHCC
T ss_conf             89649


No 6  
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Probab=100.00  E-value=0  Score=360.69  Aligned_cols=265  Identities=31%  Similarity=0.444  Sum_probs=219.8

Q ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             778632388632346-8999998399999127899996887899999988767643466777567862476542146999
Q 004503          117 TRSWDFIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGN  195 (748)
Q Consensus       117 ~~~~~~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~  195 (748)
                      ..+|.+..++...+| .+++|+||+|+||||||+ +||+|...                           ..++|. ++ 
T Consensus         3 ~~~w~l~~i~~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~---------------------------~~~~~~-~~-   52 (269)
T d1gcia_           3 SVPWGISRVQAPAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR---------------------------GGASFV-PG-   52 (269)
T ss_dssp             CCCHHHHHTTHHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE---------------------------EEEECS-TT-
T ss_pred             CCCCCHHHHCCHHHHHCCCCCCCEEEEEECCCCC-CCCCCCCC---------------------------CCCCCC-CC-
T ss_conf             7880466769587986799989959999897887-88210751---------------------------454640-79-


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999146787402566677653344445312234676199998752599-9998999999999775796
Q 004503          196 PDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSS-GCSDMDILAAFDAAIHDGV  274 (748)
Q Consensus       196 ~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~A~~dgv  274 (748)
                           ...+.|.++|||||||+|++....         +...|+||+|+|+.+|++. .. .+....+.++++++..+++
T Consensus        53 -----~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~-~~~~~~~~~~~~ai~~~~~~~~  117 (269)
T d1gcia_          53 -----EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLG-ASGSGSVSSIAQGLEWAGNNGM  117 (269)
T ss_dssp             -----CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBC-TTSCBCHHHHHHHHHHHHHTTC
T ss_pred             -----CCCCCCCCHHHHEECCCCCCCCCC---------CCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHHHHHCCC
T ss_conf             -----898666540100102333356787---------5322347724899999834-7898648999999999875223


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEE
Q ss_conf             09997138999997200898999986616959999017999999865578984499702344553022256389818954
Q 004503          275 NVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSG  354 (748)
Q Consensus       275 dVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g  354 (748)
                      ++||+|||....   ......+...+.++|+++|+||||+|......++..|++|+||+.+.+                 
T Consensus       118 ~~in~s~g~~~~---~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-----------------  177 (269)
T d1gcia_         118 HVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-----------------  177 (269)
T ss_dssp             SEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------------
T ss_pred             CCCCCCCCCCCC---CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC-----------------
T ss_conf             345644455544---316788887501585699862478899984574236886699987469-----------------


Q ss_pred             EEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             56412799997132696556556777855557667999998874335999953888612464305714999931676332
Q 004503          355 VGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDV  434 (748)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~  434 (748)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (269)
T d1gcia_         178 --------------------------------------------------------------------------------  177 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCC
Q ss_conf             10222128997055528899988418996499983303431499001458899999999998891770799679311487
Q 004503          435 AQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLM  514 (748)
Q Consensus       435 ~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~  514 (748)
                                                                 +.++.||++||.        |||+|||.++.++... 
T Consensus       178 -------------------------------------------~~~~~~S~~G~~--------~di~Apg~~~~~~~~~-  205 (269)
T d1gcia_         178 -------------------------------------------NNRASFSQYGAG--------LDIVAPGVNVQSTYPG-  205 (269)
T ss_dssp             -------------------------------------------SCBCTTCCCSTT--------EEEEEECSSEEEEETT-
T ss_pred             -------------------------------------------CCCCCCCCCCCC--------CEEEEEEECCEECCCC-
T ss_conf             -------------------------------------------972553689997--------5088863010002699-


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56677779976656135236654156887788986711999999999999860387887789997856788776792465
Q 004503          515 KSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNPQKA  594 (748)
Q Consensus       515 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A  594 (748)
                                  ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||+++..      +..+|+|+||+++|
T Consensus       206 ------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~------~~~~G~G~ln~~~A  267 (269)
T d1gcia_         206 ------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS------TNLYGSGLVNAEAA  267 (269)
T ss_dssp             ------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC------HHHHTTCBCCHHHH
T ss_pred             ------------CCEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC------CCCCCCCEECHHHH
T ss_conf             ------------865841784167899999999999878899999999999943903899------99831572759896


Q ss_pred             CC
Q ss_conf             89
Q 004503          595 VS  596 (748)
Q Consensus       595 ~~  596 (748)
                      ++
T Consensus       268 vk  269 (269)
T d1gcia_         268 TR  269 (269)
T ss_dssp             TC
T ss_pred             CC
T ss_conf             19


No 7  
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}
Probab=100.00  E-value=0  Score=361.97  Aligned_cols=267  Identities=30%  Similarity=0.439  Sum_probs=216.1

Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             78632388632346-89999983999991278999968878999999887676434667775678624765421469999
Q 004503          118 RSWDFIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNP  196 (748)
Q Consensus       118 ~~~~~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~  196 (748)
                      -+|.+..+..+.+| ++++|+||+|+|||||||++||+|+..                           ..+++..+.  
T Consensus         4 ~~~~l~~i~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~---------------------------~~~~~~~~~--   54 (281)
T d1to2e_           4 VPYGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA---------------------------GGASMVPSE--   54 (281)
T ss_dssp             CCHHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------------------------EEEECCTTC--
T ss_pred             CCCCHHHHCCHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHC---------------------------CCCCCCCCC--
T ss_conf             770767759178987799979949999788979999636314---------------------------886664799--


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999991467874025666776533444453122346761999987525999-9989999999997757960
Q 004503          197 DPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHDGVN  275 (748)
Q Consensus       197 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~A~~dgvd  275 (748)
                          .....+..+|||||||||+|....         ....|+||+|+|+.+|+++ ..+ +...+++++++|+++.+++
T Consensus        55 ----~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~-~~~~~~~~~~~~ai~~a~~~~~~  120 (281)
T d1to2e_          55 ----TNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLG-ADGSGQYSWIINGIEWAIANNMD  120 (281)
T ss_dssp             ----CCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCS
T ss_pred             ----CCCCCCCCCCCCEEECCCCCCCCC---------CCCCEEECCCEEEEEEEEC-CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             ----987767677885442035547778---------8731330344799999757-99984799999999999860564


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----CCCCCCCCEEEEECCCCCCCEEEEEEECCCEE
Q ss_conf             99971389999972008989999866169599990179999998----65578984499702344553022256389818
Q 004503          276 VISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWG----TVSNHAPWLVTVAASGIDRQFKSKVKTGNGRS  351 (748)
Q Consensus       276 VIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~  351 (748)
                      |+|+|||...   ....+..++..+.++|+++|+||||++....    ..++..+++|+||+.+.+              
T Consensus       121 v~n~S~g~~~---~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--------------  183 (281)
T d1to2e_         121 VINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--------------  183 (281)
T ss_dssp             EEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT--------------
T ss_pred             CCCCCCCCCC---CHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC--------------
T ss_conf             1024667873---03889999999874588513123675667888875677778826999851578--------------


Q ss_pred             EEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCC
Q ss_conf             95456412799997132696556556777855557667999998874335999953888612464305714999931676
Q 004503          352 VSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQF  431 (748)
Q Consensus       352 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~  431 (748)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (281)
T d1to2e_         184 --------------------------------------------------------------------------------  183 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECC
Q ss_conf             33210222128997055528899988418996499983303431499001458899999999998891770799679311
Q 004503          432 LDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASY  511 (748)
Q Consensus       432 ~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~  511 (748)
                                                                    +.++.||++||.        +|+.|||.+|+++.
T Consensus       184 ----------------------------------------------~~~~~~S~~G~~--------~d~~apG~~i~s~~  209 (281)
T d1to2e_         184 ----------------------------------------------NQRASFSSVGPE--------LDVMAPGVSIQSTL  209 (281)
T ss_dssp             ----------------------------------------------SCBCTTCCCSTT--------CCEEEECSSEEEEE
T ss_pred             ----------------------------------------------CCCCCCCCCCCC--------CCCCCCCCCCEEEC
T ss_conf             ----------------------------------------------888765688887--------46417888822124


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             48756677779976656135236654156887788986711999999999999860387887789997856788776792
Q 004503          512 TLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQVNP  591 (748)
Q Consensus       512 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~  591 (748)
                      +.             +.|..++|||||||+|||++|||+|++|.|++.+||.+|++||+++..      +..+|+|+||+
T Consensus       210 ~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ld~  270 (281)
T d1to2e_         210 PG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINV  270 (281)
T ss_dssp             TT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------HHHHTTCBCCH
T ss_pred             CC-------------CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC------CCCCCCCCCCH
T ss_conf             89-------------946710685416888999999999878799999999999964916889------98732575059


Q ss_pred             CCCCCC
Q ss_conf             465898
Q 004503          592 QKAVSP  597 (748)
Q Consensus       592 ~~A~~~  597 (748)
                      .+|++.
T Consensus       271 ~~A~~~  276 (281)
T d1to2e_         271 QAAAQH  276 (281)
T ss_dssp             HHHTSS
T ss_pred             HHHHHH
T ss_conf             999866


No 8  
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}
Probab=100.00  E-value=0  Score=333.09  Aligned_cols=291  Identities=26%  Similarity=0.315  Sum_probs=213.4

Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             78632388632346-89999983999991278999968878999999887676434667775678624765421469999
Q 004503          118 RSWDFIGLPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNP  196 (748)
Q Consensus       118 ~~~~~~~~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~  196 (748)
                      -+|.+..+....+| .+++|+||+|+|||||||++||+|.+.                         +...++|..... 
T Consensus         6 ~~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-------------------------~~~~~~~~~~~~-   59 (309)
T d2ixta1           6 IPWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-------------------------VEQCKDFTGATT-   59 (309)
T ss_dssp             SCHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-------------------------EEEEEESSSSSS-
T ss_pred             CCHHHHHCCCHHHHCCCCCCCCEEEEEECCCCCCCCHHHHCC-------------------------CCCCCCCCCCCC-
T ss_conf             871286649755530599999959999856979999558356-------------------------332310467887-


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHHHC---
Q ss_conf             99999999999999146787402566677653344445312234676199998752599-99989999999997757---
Q 004503          197 DPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSS-GCSDMDILAAFDAAIHD---  272 (748)
Q Consensus       197 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~A~~d---  272 (748)
                        .......|.++|||||||||+|...++       ...+.||||+|+|+.++++. .. .+..++++.+++++++.   
T Consensus        60 --~~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  129 (309)
T d2ixta1          60 --PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLL-DSGSGYSDDIAAAIRHAADQATA  129 (309)
T ss_dssp             --CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSC-TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCCCCCCCCCCCCCCCCCCCCCCC-------CHHHHHHHHHCCCEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             --888885554422124432223333543-------00312434203411466416-89985421222221111233332


Q ss_pred             --CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC--CCCCCCEEEEECCCCCCCEEEEEEECC
Q ss_conf             --9609997138999997200898999986616959999017999999865--578984499702344553022256389
Q 004503          273 --GVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTV--SNHAPWLVTVAASGIDRQFKSKVKTGN  348 (748)
Q Consensus       273 --gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~  348 (748)
                        ...|+|+|++...   .......+...+.++|+++|+||||++......  +...+++++|++..........     
T Consensus       130 ~~~~~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~-----  201 (309)
T d2ixta1         130 TGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY-----  201 (309)
T ss_dssp             HTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE-----
T ss_pred             CCCCCCCCCCCCCCC---CCCCHHCCCCCHHCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-----
T ss_conf             333222223565566---532100012102117926999704212347875872442032222322334543110-----


Q ss_pred             CEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEE
Q ss_conf             81895456412799997132696556556777855557667999998874335999953888612464305714999931
Q 004503          349 GRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGS  428 (748)
Q Consensus       349 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~  428 (748)
                                           ..                                                         
T Consensus       202 ---------------------~~---------------------------------------------------------  203 (309)
T d2ixta1         202 ---------------------RV---------------------------------------------------------  203 (309)
T ss_dssp             ---------------------EE---------------------------------------------------------
T ss_pred             ---------------------CC---------------------------------------------------------
T ss_conf             ---------------------00---------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEE
Q ss_conf             67633210222128997055528899988418996499983303431499001458899999999998891770799679
Q 004503          429 EQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDIL  508 (748)
Q Consensus       429 ~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~  508 (748)
                                                                    ........++++|+..  ....||||+|||.+|+
T Consensus       204 ----------------------------------------------~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~  235 (309)
T d2ixta1         204 ----------------------------------------------ADYSSRGYISTAGDYV--IQEGDIEISAPGSSVY  235 (309)
T ss_dssp             ----------------------------------------------CTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEE
T ss_pred             ----------------------------------------------CCCCCCCCCCCCCCCC--CCCCCCEEECCCCCEE
T ss_conf             ----------------------------------------------0012221122210002--6788600543787556


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC----CCCCCC
Q ss_conf             3114875667777997665613523665415688778898671199999999999986038788778999----785678
Q 004503          509 ASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNN----EAEFAY  584 (748)
Q Consensus       509 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~----~~~~~~  584 (748)
                      ++...             ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||++++..+..    ..++.+
T Consensus       236 s~~~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g~~~~~~~~~  302 (309)
T d2ixta1         236 STWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYAS  302 (309)
T ss_dssp             EECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTT
T ss_pred             EECCC-------------CCCEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             42278-------------86202348531247899999999987889999999999996492678878767765787666


Q ss_pred             CCCCCCC
Q ss_conf             8776792
Q 004503          585 GAGQVNP  591 (748)
Q Consensus       585 G~G~in~  591 (748)
                      |+|++|+
T Consensus       303 g~G~~~v  309 (309)
T d2ixta1         303 GFGFARV  309 (309)
T ss_dssp             BTCBCCC
T ss_pred             CCCEECC
T ss_conf             7788629


No 9  
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}
Probab=100.00  E-value=0  Score=329.98  Aligned_cols=254  Identities=28%  Similarity=0.347  Sum_probs=197.9

Q ss_pred             CCCCCCCCCCCCC------CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             5778632388632------3468999998399999127899996887899999988767643466777567862476542
Q 004503          116 TTRSWDFIGLPQT------ARRNLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARY  189 (748)
Q Consensus       116 ~~~~~~~~~~~~~------~~w~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~  189 (748)
                      +..+|.+..+.++      ..|...+|+||+|+|||||||++||+|.+.                         +...+.
T Consensus         4 ~~~~wgl~~i~~~~~~~~~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~-------------------------~~~~~~   58 (279)
T d2pwaa1           4 TNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGR-------------------------AQMVKT   58 (279)
T ss_dssp             TTCCHHHHHHTCSSTTCCCEECCTTTTTTEEEEEEESCCCTTCGGGTTC-------------------------EEEEEE
T ss_pred             CCCCCCHHHHCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCHHHCCC-------------------------CEECCC
T ss_conf             8999712540888768886253289978839999776879999446687-------------------------244267


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             14699999999999999999914678740256667765334444531223467619999875259999989999999997
Q 004503          190 FKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAA  269 (748)
Q Consensus       190 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~A  269 (748)
                      +.          ..+.|.++|||||||||+|+.              .|+||+|+|+.+|++........+.+..+++++
T Consensus        59 ~~----------~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~  114 (279)
T d2pwaa1          59 YY----------YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFV  114 (279)
T ss_dssp             SS----------SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred             CC----------CCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHEE
T ss_conf             77----------886555676654022344212--------------234787531103540488655422332101100


Q ss_pred             HHC-------CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CCCCCCCEEEEECCCCCCCEE
Q ss_conf             757-------960999713899999720089899998661695999901799999986-557898449970234455302
Q 004503          270 IHD-------GVNVISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGT-VSNHAPWLVTVAASGIDRQFK  341 (748)
Q Consensus       270 ~~d-------gvdVIn~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~-~~~~~p~vitVga~~~~~~~~  341 (748)
                      ...       +++|+|+|||...    .+.+..++..+.++|+++|+||||++..... .+...|++|+|||.+.+    
T Consensus       115 ~~~~~~~~~~~~~i~n~s~g~~~----~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~----  186 (279)
T d2pwaa1         115 ASDKNNRNCPKGVVASLSLGGGY----SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY----  186 (279)
T ss_dssp             HHHGGGSCCTTEEEEEECCCEEC----CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----
T ss_pred             CCCCCCCCCCCCCCEECCCCCCC----CCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEC----
T ss_conf             00122446666542002478844----2222102246661792799957521136665678667715786557416----


Q ss_pred             EEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCC
Q ss_conf             22563898189545641279999713269655655677785555766799999887433599995388861246430571
Q 004503          342 SKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGG  421 (748)
Q Consensus       342 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga  421 (748)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T d2pwaa1         187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf             49999316763321022212899705552889998841899649998330343149900145889999999999889177
Q 004503          422 VGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIA  501 (748)
Q Consensus       422 ~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~  501 (748)
                                                                              +.++.||++||.        |||+
T Consensus       187 --------------------------------------------------------g~~~~~S~~G~~--------~dv~  202 (279)
T d2pwaa1         187 --------------------------------------------------------DRRSSFSNYGSV--------LDIF  202 (279)
T ss_dssp             --------------------------------------------------------SBBCTTCCBSTT--------CCEE
T ss_pred             --------------------------------------------------------CCCCCCCCCCCC--------CCCC
T ss_conf             --------------------------------------------------------877665677884--------1013


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             07996793114875667777997665613523665415688778898671199999999999986038788778999785
Q 004503          502 APGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQRVNNEAE  581 (748)
Q Consensus       502 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~  581 (748)
                      |||.+|+++++.             +.|..++|||||||+|||++|||+|++|.++++++| .|+.||++.+       .
T Consensus       203 APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~-~ll~ta~~~~-------~  261 (279)
T d2pwaa1         203 GPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGD-------L  261 (279)
T ss_dssp             EECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHH-HHHHHSEESC-------C
T ss_pred             CCCCCCCCCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHCCCCC-------C
T ss_conf             213353211268-------------766678801007899999999998738998599999-9998686888-------7


Q ss_pred             CCCCCCCCCC
Q ss_conf             6788776792
Q 004503          582 FAYGAGQVNP  591 (748)
Q Consensus       582 ~~~G~G~in~  591 (748)
                      ...|+|.+|.
T Consensus       262 ~~~g~g~~n~  271 (279)
T d2pwaa1         262 SNIPFGTVNL  271 (279)
T ss_dssp             BSCCTTSCCE
T ss_pred             CCCCCCCHHH
T ss_conf             7899998323


No 10 
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}
Probab=100.00  E-value=0  Score=318.22  Aligned_cols=299  Identities=25%  Similarity=0.317  Sum_probs=216.4

Q ss_pred             CCCCCCCCCC--CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             2388632346--89999983999991278999968878999999887676434667775678624765421469999999
Q 004503          122 FIGLPQTARR--NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPW  199 (748)
Q Consensus       122 ~~~~~~~~~w--~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~~~~  199 (748)
                      +++++  .+|  .+++|+||+|||||||||++||+|....      .             .+.++...+.+. ..     
T Consensus         7 ~~~~~--~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~-------------~~~~~~~~~~~~-~~-----   59 (318)
T d1wmda2           7 IVKAD--VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A-------------FRGKITALYALG-RT-----   59 (318)
T ss_dssp             HTTHH--HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T-------------TTTCEEEEEETT-TT-----
T ss_pred             CCCCH--HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC------C-------------CCCCEEEECCCC-CC-----
T ss_conf             13843--677716825658699998488388995322384------5-------------578578614778-99-----


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC---CCHHHHHHHHHHHHHCCCCE
Q ss_conf             999999999991467874025666776533444453122346761999987525999---99899999999977579609
Q 004503          200 DILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG---CSDMDILAAFDAAIHDGVNV  276 (748)
Q Consensus       200 ~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~A~~dgvdV  276 (748)
                        .++.|..+|||||||||+|+...           ..||||+|+|+.+|+++ ..+   .....+..+++++...+++|
T Consensus        60 --~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~i  125 (318)
T d1wmda2          60 --NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARI  125 (318)
T ss_dssp             --TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSE
T ss_pred             --CCCCCCCCCCCCCEEECCCCCCC-----------CCHHHHCCCCEEEEEEE-ECCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf             --98888898770100004212555-----------32212203401025653-04654322024677788888628864


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--CCCCEEEEECCCCCCCEEEEEEECCCEEEEE
Q ss_conf             99713899999720089899998661695999901799999986557--8984499702344553022256389818954
Q 004503          277 ISISIGGATEDYASDTISVGAFHALKKGIVTVASAGNDGPKWGTVSN--HAPWLVTVAASGIDRQFKSKVKTGNGRSVSG  354 (748)
Q Consensus       277 In~S~G~~~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g  354 (748)
                      +|+|||.............+...+.++++++|+++||.+.....+..  ..+.++++.+.........            
T Consensus       126 ~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------  193 (318)
T d1wmda2         126 HTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG------------  193 (318)
T ss_dssp             EEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC------------
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC------------
T ss_conf             52353333445665467799999861552444554145665554332334443321110367653111------------


Q ss_pred             EEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             56412799997132696556556777855557667999998874335999953888612464305714999931676332
Q 004503          355 VGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDV  434 (748)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~  434 (748)
                                                     ...                                              
T Consensus       194 -------------------------------~~~----------------------------------------------  196 (318)
T d1wmda2         194 -------------------------------SYA----------------------------------------------  196 (318)
T ss_dssp             -------------------------------GGG----------------------------------------------
T ss_pred             -------------------------------CCC----------------------------------------------
T ss_conf             -------------------------------123----------------------------------------------


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCC
Q ss_conf             10222128997055528899988418996499983303431499001458899999999998891770799679311487
Q 004503          435 AQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLM  514 (748)
Q Consensus       435 ~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~  514 (748)
                                                              .....+..+|++||..  ....|||+.|||.+|+++....
T Consensus       197 ----------------------------------------~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~  234 (318)
T d1wmda2         197 ----------------------------------------DNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSL  234 (318)
T ss_dssp             ----------------------------------------SCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTT
T ss_pred             ----------------------------------------CCCCCCCCCCCCCCCC--CCCCCCCEEECCCEEEECCCCC
T ss_conf             ----------------------------------------3322222245568876--7776652220374487325664


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             566777799766561352366541568877889867119-----999999999998603878877899978567887767
Q 004503          515 KSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFH-----PSWSPAAIKSAIMTTAKPMSQRVNNEAEFAYGAGQV  589 (748)
Q Consensus       515 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~G~G~i  589 (748)
                      ...... .......|..++|||||||+|||++|||+|++     +.|+|.+||++|++||++.+....   +..||||+|
T Consensus       235 ~~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~~~---~~~~G~G~l  310 (318)
T d1wmda2         235 APDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYP---NGNQGWGRV  310 (318)
T ss_dssp             CCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCSS---CTTTTTCBC
T ss_pred             CCCCCC-CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCC---CCCEEECEE
T ss_conf             346754-5688753012367622669999999999998576049998999999999963856899999---777550216


Q ss_pred             CCCCCCC
Q ss_conf             9246589
Q 004503          590 NPQKAVS  596 (748)
Q Consensus       590 n~~~A~~  596 (748)
                      |+.+||+
T Consensus       311 d~~~Al~  317 (318)
T d1wmda2         311 TLDKSLN  317 (318)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHHC
T ss_conf             3998738


No 11 
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.4e-45  Score=309.38  Aligned_cols=287  Identities=17%  Similarity=0.231  Sum_probs=190.1

Q ss_pred             CCCCCCCCCC-----CCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             5778632388-----632346-8999998399999127899996887899999988767643466777567862476542
Q 004503          116 TTRSWDFIGL-----PQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARY  189 (748)
Q Consensus       116 ~~~~~~~~~~-----~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~  189 (748)
                      -+++|.+..+     +...+| .+.+|+||+|||||||||++||+|.+..            ..+.+|.           
T Consensus        10 ~~~qw~l~~~~~~~in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~------------~~~~~~~-----------   66 (334)
T d1p8ja2          10 FPQQWYLSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------DPGASFD-----------   66 (334)
T ss_dssp             GGGCTTTSCTTSCSCCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------CGGGCEE-----------
T ss_pred             CHHCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHCC------------CCCCCCC-----------
T ss_conf             41138989976257997999856899999089998148789986576043------------6678722-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             14699999999999999999914678740256667765334444531223467619999875259999989999999997
Q 004503          190 FKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAA  269 (748)
Q Consensus       190 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~A  269 (748)
                      +. +......+.....|..+|||||||||++...++.       + ..|+||+++++.+|+++    ....+.+.++.++
T Consensus        67 ~~-~~~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~~-------~-~~g~a~~a~~~~~~~~~----~~~~~~~~~~~~~  133 (334)
T d1p8ja2          67 VN-DQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGV-------C-GVGVAYNARIGGVRMLD----GEVTDAVEARSLG  133 (334)
T ss_dssp             TT-TTBSCCCCCCCTTCTTCHHHHHHHHHHCCSSSSS-------S-CCCTTTTSEEEEEECSS----SCCCHHHHHHHHT
T ss_pred             CC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-------C-CCCCCCCCCCCCHHHCC----CCCCCHHHHHHHH
T ss_conf             25-8987655456666676310244566543043543-------2-22345554433100002----3565358999877


Q ss_pred             HH-CCCCEEEECCCCCCC-CCC--------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC----CCCCEEEEECCC
Q ss_conf             75-796099971389999-972--------0089899998661695999901799999986557----898449970234
Q 004503          270 IH-DGVNVISISIGGATE-DYA--------SDTISVGAFHALKKGIVTVASAGNDGPKWGTVSN----HAPWLVTVAASG  335 (748)
Q Consensus       270 ~~-dgvdVIn~S~G~~~~-~~~--------~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~~----~~p~vitVga~~  335 (748)
                      ++ ++++++|+|+|.... ...        ...+..+...+..+|+++|+||||++........    ..+.+++|++.+
T Consensus       134 ~~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~  213 (334)
T d1p8ja2         134 LNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT  213 (334)
T ss_dssp             SCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC
T ss_pred             HHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66349858968778887676457730003578999999997637964898468877667887764345643322222446


Q ss_pred             CCCCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHH
Q ss_conf             45530222563898189545641279999713269655655677785555766799999887433599995388861246
Q 004503          336 IDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSV  415 (748)
Q Consensus       336 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~  415 (748)
                      .+                                                                              
T Consensus       214 ~~------------------------------------------------------------------------------  215 (334)
T d1p8ja2         214 QF------------------------------------------------------------------------------  215 (334)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
T ss_conf             67------------------------------------------------------------------------------


Q ss_pred             HHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCC
Q ss_conf             43057149999316763321022212899705552889998841899649998330343149900145889999999999
Q 004503          416 IKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHL  495 (748)
Q Consensus       416 ~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~  495 (748)
                                                                                    +..+.||++|+..     
T Consensus       216 --------------------------------------------------------------g~~~~~s~~~~~~-----  228 (334)
T d1p8ja2         216 --------------------------------------------------------------GNVPWYSEACSST-----  228 (334)
T ss_dssp             --------------------------------------------------------------SCCCTTCCBCTTC-----
T ss_pred             --------------------------------------------------------------CCEEEECCCCCCC-----
T ss_conf             --------------------------------------------------------------8632202467765-----


Q ss_pred             CCCCEECCCCC-----EEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             88917707996-----7931148756677779976656135236654156887788986711999999999999860387
Q 004503          496 LKPDIAAPGID-----ILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAK  570 (748)
Q Consensus       496 lKPDI~APG~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~  570 (748)
                       .....++|..     +.+...             ...|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus       229 -~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~  294 (334)
T d1p8ja2         229 -LATTYSSGNQNEKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSK  294 (334)
T ss_dssp             -CEEEECCCSTTSCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred             -CCCCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             -332235532224533222368-------------731247887600452789999999976889999999999997484


Q ss_pred             CCCCCCCCC--------CCCCCCCCCCCCCCCCCC
Q ss_conf             887789997--------856788776792465898
Q 004503          571 PMSQRVNNE--------AEFAYGAGQVNPQKAVSP  597 (748)
Q Consensus       571 ~~~~~~~~~--------~~~~~G~G~in~~~A~~~  597 (748)
                      +........        .+..+|+|+||+.+|++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~~  329 (334)
T d1p8ja2         295 PAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVAL  329 (334)
T ss_dssp             CTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHH
T ss_conf             66788754234677766578876547279999999


No 12 
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1.4e-45  Score=309.27  Aligned_cols=288  Identities=19%  Similarity=0.229  Sum_probs=198.6

Q ss_pred             CCCCCCCC-------CCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             77863238-------8632346-899999839999912789999688789999998876764346677756786247654
Q 004503          117 TRSWDFIG-------LPQTARR-NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGAR  188 (748)
Q Consensus       117 ~~~~~~~~-------~~~~~~w-~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~  188 (748)
                      .++|.+..       ++...+| .+++|+||+|+|||||||++||+|++....          .             +.+
T Consensus        18 ~~qw~l~~~~~~~~din~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~----------~-------------~~~   74 (339)
T d2id4a2          18 ERQWHLVNPSFPGSDINVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA----------E-------------GSW   74 (339)
T ss_dssp             GGCTTTSCSSSTTCSCCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG----------G-------------GCE
T ss_pred             HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHCCCCC----------C-------------CCC
T ss_conf             44569788998766668899986699999808999776868999678467142----------1-------------465


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             21469999999999999999991467874025666776533444453122346761999987525999998999999999
Q 004503          189 YFKLDGNPDPWDILSPIDVDGHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDA  268 (748)
Q Consensus       189 ~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~  268 (748)
                      +|. +..   .......++++|||||||+|++....+.        .+.|+||+|+|+.++++.  ......++..++.+
T Consensus        75 ~~~-~~~---~~~~~~~~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~--~~~~~~~~~~~~~~  140 (339)
T d2id4a2          75 DFN-DNT---NLPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILS--GDITTEDEAASLIY  140 (339)
T ss_dssp             ETT-TTB---SCCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTT--SCCCHHHHHHHTTT
T ss_pred             CCC-CCC---CCCCCCCCCCCCCCEEEECCCCCCCCCC--------CCCCCCCCCCCCEEEEEE--CCCCCHHHHHHHHH
T ss_conf             444-677---7658876544320012211344564346--------642000256530389862--26663699999999


Q ss_pred             HHHCCCCEEEECCCCCCCC--------CCHHHH-HHHHHHHHHCCCEEEEECCCCCCCCCCCC--C--CCCCEEEEECCC
Q ss_conf             7757960999713899999--------720089-89999866169599990179999998655--7--898449970234
Q 004503          269 AIHDGVNVISISIGGATED--------YASDTI-SVGAFHALKKGIVTVASAGNDGPKWGTVS--N--HAPWLVTVAASG  335 (748)
Q Consensus       269 A~~dgvdVIn~S~G~~~~~--------~~~~~i-~~a~~~a~~~Gv~vV~aAGN~G~~~~~~~--~--~~p~vitVga~~  335 (748)
                      ++.. .+|+|+|+|.....        ....++ ..+...+..+|+++|+||||++.......  .  ..+.+++|++.+
T Consensus       141 ~~~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (339)
T d2id4a2         141 GLDV-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID  219 (339)
T ss_dssp             TTTT-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC
T ss_pred             HHHH-CCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8863-879964677777766556753156899999999998548928993166776678765543232212222234322


Q ss_pred             CCCCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHH
Q ss_conf             45530222563898189545641279999713269655655677785555766799999887433599995388861246
Q 004503          336 IDRQFKSKVKTGNGRSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSV  415 (748)
Q Consensus       336 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~  415 (748)
                      .                                                                               
T Consensus       220 ~-------------------------------------------------------------------------------  220 (339)
T d2id4a2         220 H-------------------------------------------------------------------------------  220 (339)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
T ss_conf             2-------------------------------------------------------------------------------


Q ss_pred             HHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCC
Q ss_conf             43057149999316763321022212899705552889998841899649998330343149900145889999999999
Q 004503          416 IKGIGGVGIIVGSEQFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHL  495 (748)
Q Consensus       416 ~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~  495 (748)
                                                                                   .+..+.||++|+..    .
T Consensus       221 -------------------------------------------------------------~g~~~~~s~~~~~~----~  235 (339)
T d2id4a2         221 -------------------------------------------------------------KDLHPPYSEGCSAV----M  235 (339)
T ss_dssp             -------------------------------------------------------------TSCCCTTCCCCTTE----E
T ss_pred             -------------------------------------------------------------CCCCCCCCCCCCCC----C
T ss_conf             -------------------------------------------------------------34445544566765----3


Q ss_pred             CCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             88917707996793114875667777997665613523665415688778898671199999999999986038788778
Q 004503          496 LKPDIAAPGIDILASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPSWSPAAIKSAIMTTAKPMSQR  575 (748)
Q Consensus       496 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~  575 (748)
                      ..++..+||..+.+.....            ..|..++|||||||||||++|||+|++|+|++.+||.+|++||..++..
T Consensus       236 ~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~  303 (339)
T d2id4a2         236 AVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN  303 (339)
T ss_dssp             EEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTC
T ss_pred             EEEEEECCCCCCCEECCCC------------CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             1345301124531001589------------8334578875217888899999998787999999999999727255877


Q ss_pred             CCC---------CCCCCCCCCCCCCCCCCCCC
Q ss_conf             999---------78567887767924658986
Q 004503          576 VNN---------EAEFAYGAGQVNPQKAVSPG  598 (748)
Q Consensus       576 ~~~---------~~~~~~G~G~in~~~A~~~g  598 (748)
                      ...         ..+..||||+||+.+||+..
T Consensus       304 ~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~a  335 (339)
T d2id4a2         304 ADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMS  335 (339)
T ss_dssp             GGGCCEECSSSSEEBTTTBTCBCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHH
T ss_conf             77653225777776788445563799999999


No 13 
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}
Probab=100.00  E-value=1.1e-36  Score=251.85  Aligned_cols=306  Identities=16%  Similarity=0.146  Sum_probs=177.4

Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89999983999991278999968878999999887676434667775678624765421469999999999999999991
Q 004503          132 NLKIESDIVVGLMDTGITPESESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVDGHG  211 (748)
Q Consensus       132 ~~~~G~gV~VaVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHG  211 (748)
                      .+++|+||+|||||||||++||+|.+.        |+.   .+..+.                      ...+.|.++|+
T Consensus        19 ~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~---~~~~~~----------------------~~~~~~~~g~~   65 (357)
T d1t1ga_          19 EGLDGQGQCIAIIALGGGYDETSLAQY--------FAS---LGVSAP----------------------QVVSVSVDGAT   65 (357)
T ss_dssp             TTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH---TTCCCC----------------------CEEEEESTTCC
T ss_pred             CCCCCCCCEEEEEECCCCCCCHHHHHH--------HHH---CCCCCC----------------------CCCEECCCCCC
T ss_conf             898988978999976887786889877--------750---588789----------------------98633799999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHH---HCCCCEEEECCCCCCC--
Q ss_conf             46787402566677653344445312234676199998752599999899999999977---5796099971389999--
Q 004503          212 THTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSGCSDMDILAAFDAAI---HDGVNVISISIGGATE--  286 (748)
Q Consensus       212 ThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~A~---~dgvdVIn~S~G~~~~--  286 (748)
                      ||++|++++......    .....+.||||+|+|+.+|++. .    ....+.++++++   +++++|||+|||....  
T Consensus        66 ~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~-~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~  136 (357)
T d1t1ga_          66 NQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPN-T----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSW  136 (357)
T ss_dssp             CCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCS-S----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGS
T ss_pred             CCCCCCCCCCCCCCC----CCCCCCEEECCCCEEEEEECCC-C----CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             887876556443005----7764312541467699874124-7----884589999998741149808965666576766


Q ss_pred             -CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC--------CCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEE
Q ss_conf             -9720089899998661695999901799999986--------5578984499702344553022256389818954564
Q 004503          287 -DYASDTISVGAFHALKKGIVTVASAGNDGPKWGT--------VSNHAPWLVTVAASGIDRQFKSKVKTGNGRSVSGVGV  357 (748)
Q Consensus       287 -~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~~--------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~  357 (748)
                       ......+......+..+|+++|+++||+|.....        .+...+++++|++........        .       
T Consensus       137 ~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~-------  201 (357)
T d1t1ga_         137 APASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAG--------R-------  201 (357)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSS--------C-------
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC--------C-------
T ss_conf             5434899987665321578679998416874321134454420113577623665402367877--------5-------


Q ss_pred             ECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf             12799997132696556556777855557667999998874335999953888612464305714999931676332102
Q 004503          358 NTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSEQFLDVAQI  437 (748)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~  437 (748)
                              ..+........                                      .....+ .+.-.....       
T Consensus       202 --------~~~~~~~~~~~--------------------------------------~~~~~~-~g~s~~~~~-------  227 (357)
T d1t1ga_         202 --------IERETVWNDGP--------------------------------------DGGSTG-GGVSRIFPL-------  227 (357)
T ss_dssp             --------EEEEEECBCHH--------------------------------------HHCBCC-CEECSSSCC-------
T ss_pred             --------CCCCEECCCCC--------------------------------------CCCCCC-CCCCCCCCC-------
T ss_conf             --------44520126666--------------------------------------643344-774412136-------


Q ss_pred             CCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCC
Q ss_conf             22128997055528899988418996499983303431499001458899999999998891770799679311487566
Q 004503          438 YMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDILASYTLMKSL  517 (748)
Q Consensus       438 ~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~  517 (748)
                                                         ..........+++.+++.  .++.|||+.+++...........  
T Consensus       228 -----------------------------------p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~--  268 (357)
T d1t1ga_         228 -----------------------------------PSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID--  268 (357)
T ss_dssp             -----------------------------------CGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET--
T ss_pred             -----------------------------------CCCCCCCCCCCCCCCCCC--CCCEECCEECCCCCCCCEEEECC--
T ss_conf             -----------------------------------752335423455667777--77331332113578774277469--


Q ss_pred             CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCCCC-------C-----CCCCCCC
Q ss_conf             77779976656135236654156887788986711999---9999999998603878877-------8-----9997856
Q 004503          518 TGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPS---WSPAAIKSAIMTTAKPMSQ-------R-----VNNEAEF  582 (748)
Q Consensus       518 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~---~sp~~Ik~~L~~TA~~~~~-------~-----~~~~~~~  582 (748)
                               +.|..++|||||||||||++|||+|+++.   +....++.+...+.+++..       .     ..+-.+.
T Consensus       269 ---------~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~  339 (357)
T d1t1ga_         269 ---------GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDP  339 (357)
T ss_dssp             ---------TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBT
T ss_pred             ---------CCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ---------96661688316879999999999764058867659999862601331243267788888776567668988


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             78877679246589
Q 004503          583 AYGAGQVNPQKAVS  596 (748)
Q Consensus       583 ~~G~G~in~~~A~~  596 (748)
                      .+|||++|+.++++
T Consensus       340 ~tG~G~~n~~~~~~  353 (357)
T d1t1ga_         340 CTGLGSPIGIRLLQ  353 (357)
T ss_dssp             TTBTCEECHHHHHH
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             84674154999987


No 14 
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}
Probab=100.00  E-value=1.9e-34  Score=237.23  Aligned_cols=307  Identities=16%  Similarity=0.165  Sum_probs=181.0

Q ss_pred             CCCCCCCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             4689999983999991278999-968878999999887676434667775678624765421469999999999999999
Q 004503          130 RRNLKIESDIVVGLMDTGITPE-SESFKDSGFGPPPAKWKGKCDHFANFSGCNNKLIGARYFKLDGNPDPWDILSPIDVD  208 (748)
Q Consensus       130 ~w~~~~G~gV~VaVIDtGId~~-Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~  208 (748)
                      ++...+|+||+|||||+|.++. |+||..         +..    ...++.++.     ..           .....+..
T Consensus        18 ~~~~~tG~gvtVaIid~G~~~~~~~Dl~~---------f~~----~~~~~~~~~-----~~-----------~~~~~~~~   68 (369)
T d1ga6a_          18 ASSAPTAANTTVGIITIGGVSQTLQDLQQ---------FTS----ANGLASVNT-----QT-----------IQTGSSNG   68 (369)
T ss_dssp             CTTSCCEEEEEEEEEEESBCHHHHHHHHH---------HHH----HTTCCCCCE-----EE-----------EECSCTTS
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCHHHHHH---------HHH----HCCCCCCCC-----CE-----------ECCCCCCC
T ss_conf             99888988748999961786567889999---------998----659998997-----76-----------51799888


Q ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHHHC-CCCEEEECCCCC--
Q ss_conf             991467874025666776533444453122346761999987525999-9989999999997757-960999713899--
Q 004503          209 GHGTHTSSTLAGNVVANASLYGLAWGAARGAVPNARVAAYKVCWVSSG-CSDMDILAAFDAAIHD-GVNVISISIGGA--  284 (748)
Q Consensus       209 gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~A~~d-gvdVIn~S~G~~--  284 (748)
                      +||||+++++.+...         ...+.||||+|+|..++++. ..+ ....+++++|++++++ +++|||+|||..  
T Consensus        69 ~~~~~~~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~-~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~  138 (369)
T d1ga6a_          69 DYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMA-DQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEA  138 (369)
T ss_dssp             CCCBCHHHHHHHHHH---------HHHHHHHTTSCEEEEEEEEE-CTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHH
T ss_pred             CCCCCCCCCEEECCC---------CCCCCCCCCCCEEEEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf             888887721133245---------00001015686499999957-99986569999999999975898624424432245


Q ss_pred             --CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-------------CCCCCCCCEEEEECCCCCCCEEEEEEECCC
Q ss_conf             --99972008989999866169599990179999998-------------655789844997023445530222563898
Q 004503          285 --TEDYASDTISVGAFHALKKGIVTVASAGNDGPKWG-------------TVSNHAPWLVTVAASGIDRQFKSKVKTGNG  349 (748)
Q Consensus       285 --~~~~~~~~i~~a~~~a~~~Gv~vV~aAGN~G~~~~-------------~~~~~~p~vitVga~~~~~~~~~~~~~~~g  349 (748)
                        ......+.+..++.++..+|++||+||||+|....             ..+...+++++|+++.........      
T Consensus       139 ~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~~~~~~~------  212 (369)
T d1ga6a_         139 DANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGA------  212 (369)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEEECTTSC------
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC------
T ss_conf             78861689999999999997897899817987655767889876654343466568840233310013577776------


Q ss_pred             EEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEEEC
Q ss_conf             18954564127999971326965565567778555576679999988743359999538886124643057149999316
Q 004503          350 RSVSGVGVNTFDPKEKFYPLVSGADVAKNSESRDSARFCFDDSLDPKKVKGKLVYCKLGTWGADSVIKGIGGVGIIVGSE  429 (748)
Q Consensus       350 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~gkivi~~~~~~~~~~~~~~~Ga~g~i~~~~  429 (748)
                        ..             ....+....             .        ..+..              ... +-+.-....
T Consensus       213 --~~-------------~~~~~~~~~-------------~--------~~~~~--------------~~~-ggg~s~~~~  241 (369)
T d1ga6a_         213 --YS-------------NETVWNEGL-------------D--------SNGKL--------------WAT-GGGYSVYES  241 (369)
T ss_dssp             --EE-------------EEEECEEEE-------------C--------TTSCE--------------EEC-CCEEEEEEE
T ss_pred             --CC-------------CCEEECCCC-------------C--------CCCCC--------------CCC-CCCCCCCCC
T ss_conf             --54-------------420213567-------------8--------77553--------------357-898666566


Q ss_pred             CCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCEECCCCCCCCCCCCCCCCCCCEECCCCCEE-
Q ss_conf             7633210222128997055528899988418996499983303431499001458899999999998891770799679-
Q 004503          430 QFLDVAQIYMAPGTMVNVTDGDNITDYIHSTRSPSAVIYKSQEVKVRAPFIASFSSRGPNPGSKHLLKPDIAAPGIDIL-  508 (748)
Q Consensus       430 ~~~~~~~~~~~p~~~i~~~dg~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~-  508 (748)
                                                                        ...+...+.. ...++.+|||.+++.... 
T Consensus       242 --------------------------------------------------~P~~~~~~~~-~~~~r~~pdv~~~~~~~~~  270 (369)
T d1ga6a_         242 --------------------------------------------------KPSWQSVVSG-TPGRRLLPDISFDAAQGTG  270 (369)
T ss_dssp             --------------------------------------------------CCGGGGGSTT-SCSEEEECSEEEECCGGGC
T ss_pred             --------------------------------------------------CCCCCCCCCC-CCCCCEECCEECCCCCCCC
T ss_conf             --------------------------------------------------7543334422-5788522011024678750


Q ss_pred             -ECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHCCC--CCCCCC------
Q ss_conf             -31148756677779976656135236654156887788986711999----99999999986038--788778------
Q 004503          509 -ASYTLMKSLTGLKGDTQYSKFTLMSGTSMACPHIAGVVAYVKSFHPS----WSPAAIKSAIMTTA--KPMSQR------  575 (748)
Q Consensus       509 -sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~sp~~Ik~~L~~TA--~~~~~~------  575 (748)
                       .....             +.|..++|||||||||||++|||+|++|.    +.|...+.+....+  .++..-      
T Consensus       271 ~~~~~~-------------~~~~~~~GTS~AaP~vAGvvALi~~a~~~~~G~~n~~ly~~~~~~~~~~~di~~g~n~~~~  337 (369)
T d1ga6a_         271 ALIYNY-------------GQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSLVHDVKSGNNGYGG  337 (369)
T ss_dssp             EEEEET-------------TEEEEECSHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHCGGGEECCCSCBSSSTT
T ss_pred             EEEECC-------------CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             487268-------------5466657875311389999999986356766876889999886476652044458888888


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ----999785678877679246589
Q 004503          576 ----VNNEAEFAYGAGQVNPQKAVS  596 (748)
Q Consensus       576 ----~~~~~~~~~G~G~in~~~A~~  596 (748)
                          ..+-.+..+|+|++|+.++++
T Consensus       338 ~~~~a~~G~d~~tG~G~~d~~~l~~  362 (369)
T d1ga6a_         338 YGYNAGTGWDYPTGWGSLDIAKLSA  362 (369)
T ss_dssp             CSCBCCSSSBTTTBTCEECHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHCHHHHHH
T ss_conf             8767867898895672437999999


No 15 
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}
Probab=98.33  E-value=1.3e-06  Score=57.13  Aligned_cols=70  Identities=13%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECHHHHHHHHCCCCEEEEECCCEEC
Q ss_conf             84899996888999614467799999998369888886418998533033899991999899861599848998182302
Q 004503           34 KNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYTESFNAFAAKLSNDEAQKLQRMDRVLSVFPNRYHQ  113 (748)
Q Consensus        34 ~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~  113 (748)
                      ++.|||.|++....  .....+..++    .+    .+.++.+.|+ .||||+++++++.++.|+++|+|.+|++|..++
T Consensus         1 e~~YIV~fK~~~~~--~~~~~~~~~v----~~----~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~   69 (71)
T d1scjb_           1 EKKYIVGFKQTMSA--MSSAKKKDVI----SQ----KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH   69 (71)
T ss_dssp             CEEEEEEECSSSSC--CSHHHHHHHH----HT----TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred             CCCEEEEECCCCCH--HHHHHHHHHH----HH----CCCEEEEEEE-ECCEEEEEECHHHHHHHHCCCCCEEEECCCEEE
T ss_conf             97399999899985--7899999999----97----5994999995-062599995899999997099952994883897


Q ss_pred             C
Q ss_conf             3
Q 004503          114 L  114 (748)
Q Consensus       114 ~  114 (748)
                      .
T Consensus        70 a   70 (71)
T d1scjb_          70 E   70 (71)
T ss_dssp             E
T ss_pred             C
T ss_conf             5


No 16 
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Probab=98.09  E-value=9.8e-06  Score=51.37  Aligned_cols=68  Identities=12%  Similarity=0.227  Sum_probs=48.6

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CEEEEEEEEECHHHHHHHHCCCC--EEEEECCC
Q ss_conf             8489999688899961446779999999836988888641899853-30338999919998998615998--48998182
Q 004503           34 KNFYVAYLGDQPVDEDLAVQTHIQILASVKGGSYHDAKESIVYSYT-ESFNAFAAKLSNDEAQKLQRMDR--VLSVFPNR  110 (748)
Q Consensus        34 ~~~yiV~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~y~-~~~ng~s~~~~~~~i~~L~~~p~--V~~v~~~~  110 (748)
                      .+.|||.|++..  .......+..++...        +..+.+.|. ..|+||+++++++.++.|+++|+  |.+||+|.
T Consensus         2 aG~YIVvlK~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1           2 AGKFIVIFKNDV--SEDKIRETKDEVIAE--------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             CEEEEEEECTTC--CHHHHHHHHHHHHHH--------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             CCCEEEEECCCC--CHHHHHHHHHHHHHC--------CCCEEEEEEEEEEEEEEEECCHHHHHHHHHCCCCCCCEECCCC
T ss_conf             965799989999--979999999988743--------7843789762001478896399999999847888875578988


Q ss_pred             E
Q ss_conf             3
Q 004503          111 Y  111 (748)
Q Consensus       111 ~  111 (748)
                      .
T Consensus        72 V   72 (72)
T d1v5ib1          72 V   72 (72)
T ss_dssp             E
T ss_pred             C
T ss_conf             9


No 17 
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=96.41  E-value=0.021  Score=29.82  Aligned_cols=92  Identities=8%  Similarity=0.043  Sum_probs=61.7

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEEEECCCCCEE-EEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEECCCCCCE
Q ss_conf             8978536520369950369999999973899822-899984899808999548244314883799999999604899971
Q 004503          645 LNYPTMQVSLKSNGELTTAIFRRRVTNVGPRLSI-YNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMSSTQV  723 (748)
Q Consensus       645 lnyps~~~~~~~~~~~~~~t~~~tvtn~g~~~~t-y~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~  723 (748)
                      +.-|++.+.-   +.  +.+++.+|+|.|+...+ -++.+..|.|=++.  +....+ ++||+++++++++++.....+.
T Consensus         6 ~t~p~~~v~p---G~--~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~   77 (103)
T d1w8oa1           6 FTIPDVALEP---GQ--QVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGR   77 (103)
T ss_dssp             EECCCEEECT---TC--EEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEE
T ss_pred             CCCCCEEECC---CC--EEEEEEEEEECCCCCEEEEEEEECCCCCCCCC--CCCEEE-CCCCCEEEEEEEECCCCCCCCE
T ss_conf             3676601279---97--18999999939998302106877089885625--761534-8998089999997777788762


Q ss_pred             EEEEEEEECCCCEEEEEEEEE
Q ss_conf             899999989981799279999
Q 004503          724 LSGSLEWKSPRHVVRSPIVIY  744 (748)
Q Consensus       724 ~~G~i~~~~~~~~vr~P~~~~  744 (748)
                      |.=.++...+.......|.+.
T Consensus        78 Y~i~~~a~~~~~~~s~t~tvt   98 (103)
T d1w8oa1          78 YRVGATLRTSAGNASTTFTVT   98 (103)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEE
T ss_conf             799999996896258889999


No 18 
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.34  E-value=0.31  Score=22.22  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=27.9

Q ss_pred             CCCCCCEEEEEECCCCC---HHHHHHHCCCEEEEEEECC
Q ss_conf             88743359999538886---1246430571499993167
Q 004503          395 PKKVKGKLVYCKLGTWG---ADSVIKGIGGVGIIVGSEQ  430 (748)
Q Consensus       395 ~~~~~gkivi~~~~~~~---~~~~~~~~Ga~g~i~~~~~  430 (748)
                      ..+++|||+|+|.....   +..+++..||+|+|+|++.
T Consensus        76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP  114 (233)
T d3bi1a2          76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP  114 (233)
T ss_dssp             CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCH
T ss_conf             976355599996788745478999987494399995585


No 19 
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.47  E-value=0.36  Score=21.85  Aligned_cols=36  Identities=17%  Similarity=0.343  Sum_probs=27.7

Q ss_pred             CCCCCCEEEEEECCCCC---HHHHHHHCCCEEEEEEECC
Q ss_conf             88743359999538886---1246430571499993167
Q 004503          395 PKKVKGKLVYCKLGTWG---ADSVIKGIGGVGIIVGSEQ  430 (748)
Q Consensus       395 ~~~~~gkivi~~~~~~~---~~~~~~~~Ga~g~i~~~~~  430 (748)
                      ..+++|||+|+++....   +..+++.+||+|+|+|.+.
T Consensus        58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp   96 (193)
T d1de4c2          58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQ   96 (193)
T ss_dssp             SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCT
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf             665575699995787778999888987496399994680


No 20 
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=57.12  E-value=3.5  Score=15.40  Aligned_cols=52  Identities=17%  Similarity=0.147  Sum_probs=43.2

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEE
Q ss_conf             6999999997389982289998489980899954824431488379999999960
Q 004503          662 TAIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAK  716 (748)
Q Consensus       662 ~~t~~~tvtn~g~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~  716 (748)
                      ..+...+|+|.++....|++....|.-..  |.|..-.+ .++++..++|++...
T Consensus        24 ~~~~~l~l~N~s~~~vafKvktt~p~~y~--v~P~~G~i-~p~~~~~i~V~~~~~   75 (124)
T d1grwa_          24 KHTYHIKVINSSARRIGYGIKTTNMKRLG--VDPPCGVL-DPKEAVLLAVSCDAF   75 (124)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEESCTTTEE--EESSEEEE-CTTCEEEEEEEECCC
T ss_pred             EEEEEEEEECCCCCEEEEEEEECCCCEEE--EECCCCEE-CCCCEEEEEEEEECC
T ss_conf             89999999779998089999807775099--97997779-999879999999518


No 21 
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.48  E-value=6.4  Score=13.74  Aligned_cols=64  Identities=17%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             EEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEECCC--CCCEEEEEEE
Q ss_conf             999999997389982289998489980899954824431488379999999960489--9971899999
Q 004503          663 AIFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKPMS--STQVLSGSLE  729 (748)
Q Consensus       663 ~t~~~tvtn~g~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~--~~~~~~G~i~  729 (748)
                      ++-..+++|.+.....|++....|.-..|  .|..-.+ +++++.++.|++......  .+.+.+-.+.
T Consensus        37 ~~~~l~l~N~s~~~vaFKiktt~p~~y~V--~P~~G~i-~p~~~~~I~v~~~~~~~~~~kdKFli~~~~  102 (152)
T d1wica_          37 KKTLIVLTNVTKNIVAFKVRTTAPEKYRV--KPSNSSC-DPGASIDIIVSPHGGLTVSAQDRFLIMAAE  102 (152)
T ss_dssp             CCEEEEEEBCSSSCEEEEEEESCTTTEEE--ESSEEEE-CTTCEEEEEEEECSSSCCCSSCCEEEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCCCEEE--ECCCEEE-CCCCEEEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf             78999998899986999999699753898--7993088-899979999997788765678868999999


No 22 
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=33.10  E-value=8.3  Score=12.99  Aligned_cols=50  Identities=10%  Similarity=0.093  Sum_probs=40.5

Q ss_pred             EEEEEEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEEC
Q ss_conf             99999973899822899984899808999548244314883799999999604
Q 004503          665 FRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAKP  717 (748)
Q Consensus       665 ~~~tvtn~g~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~  717 (748)
                      .+.+++|.+.....|++....|.-..  |.|..-.+ +++++..+.|+.....
T Consensus        20 ~~~~l~N~s~~~vafKiktt~~~~y~--V~P~~G~I-~P~~~~~i~I~~~~~~   69 (109)
T d1m1sa_          20 STHNITSESDSRLAFKVKSSNNEHYR--VRPVYGFV-DAKGKSKLDINRLPGP   69 (109)
T ss_dssp             EEEEEEECSSSEEEEEEEESCTTTEE--EECSEEEE-CTTCEEEEEEEECSCC
T ss_pred             EEEEEECCCCCCEEEEEECCCCCEEE--EECCEEEE-CCCCEEEEEEEECCCC
T ss_conf             89999979999289999928987698--86873698-8998589999948999


No 23 
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=30.56  E-value=9.2  Score=12.72  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=39.7

Q ss_pred             EEEEEEEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEEEEEE
Q ss_conf             99999997389982289998489980899954824431488379999999960
Q 004503          664 IFRRRVTNVGPRLSIYNATIKAPKGVNITVKPMSLSFSRTSHKRSFSVVVKAK  716 (748)
Q Consensus       664 t~~~tvtn~g~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~  716 (748)
                      ..+.+++|.+.....|++....|.-.  .|.|..-.+ ++|++.++.|+....
T Consensus        16 ~~~~~l~N~s~~~vafKvKtt~~~~y--~V~P~~G~i-~P~~~~~I~I~~~~~   65 (107)
T d1rowa_          16 SSTHKLVNGGAEKIVFKIKSSNNNEY--RIAPVFGFV-DPSGSKDVVITRTAG   65 (107)
T ss_dssp             EEEEEEEECSSSCEEEEEEESCSSSE--EEECSEEEE-CTTEEEEEEEEECSC
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCEE--EEECCEEEE-CCCCEEEEEEEECCC
T ss_conf             68999993999869999996999739--998987798-899989999995899


Done!