BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004504
(748 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 165/366 (45%), Gaps = 35/366 (9%)
Query: 305 RTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGC 364
T LH A G T LL A + +T P+H AAR+G++ +V+ L+++
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT---PLHCAARIGHTNMVKLLLENNA 104
Query: 365 DLNTKTESGETALMISAKYKQEECVKVL----------AKAG-------ADFGLVSVSG- 406
+ N T +G T L I+A+ E V L K G A +G V V+
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 407 ----QSASSIAGSNWWS---VGFQRAVLDIIR----SGNIPKSSNVAVFSPLMFVAQAGD 455
+ + AG N + V LDI++ G P S ++PL A+
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224
Query: 456 IAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIM 515
+ ++L+ + + + + G + + +AA +GH E+ L+ A+ L NKSG T +
Sbjct: 225 VEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 516 LSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDG 575
L + + + V+++ + G+ LH A+ G++ V+ L VN
Sbjct: 284 LVAQEGHVPVAD-VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342
Query: 576 DGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMK-NDAELVILDE 634
GY+PL AA++GH + LL+ NGA + ++ G T L++A++ + D V+ DE
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Query: 635 VARMLV 640
+ +LV
Sbjct: 403 TSFVLV 408
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 144/319 (45%), Gaps = 9/319 (2%)
Query: 306 TLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCD 365
T LH A G V LL GA + K E P+H+AAR G++ + + L+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPN--VSNVKVET-PLHMAARAGHTEVAKYLLQNKAK 72
Query: 366 LNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRA 425
+N K + +T L +A+ VK+L + A+ L + +G + IA G
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE----GHVET 128
Query: 426 VLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAA 485
VL ++ F+PL A+ G + + L+ R+ + + NG + + VA
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAV 187
Query: 486 SKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGF 545
++++ + L+ G +G T + ++ QN + +L++ + G
Sbjct: 188 HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA-KQNQVEVARSLLQYGGSANAESVQGV 246
Query: 546 YALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDI 605
LH AA+ G + V LL S+ N+ + G TPL L A+EGH P+ ++LI +G + D
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Query: 606 KNARGETALSLARKNSSMK 624
G T L +A ++K
Sbjct: 307 TTRMGYTPLHVASHYGNIK 325
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGAS 137
T L +A+H GN+ LVK LL ADVN K G++ A ++GH +I+ +LLK GAS
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 24/133 (18%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
K D T L AA G+ +VK LL A+ N G IA REGH+E + LL+ A
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 137 SQPACE-----EALLEASCHGQARLAELLMGSD----------LIRPHVAVHSLVTACCR 181
SQ AC L A+ +G+ R+AELL+ D L HVAVH
Sbjct: 138 SQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH-------H 189
Query: 182 GFVDVVDTLMKCG 194
+D+V L+ G
Sbjct: 190 NNLDIVKLLLPRG 202
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 54 KTRKTEVVL-REGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFR 112
K R E++L R+ P+ K+ +T L +A H N+ +VK LL G + +
Sbjct: 158 KVRVAELLLERDAHPNAAG------KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 211
Query: 113 GFATT-IAVREGHLEILEILLKAGASQPACE----EALLEASCHGQARLAELLMGSDL-- 165
G+ IA ++ +E+ LL+ G S A L A+ G A + LL+
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 166 -IRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDRL 203
+ + L G V V D L+K GV ++AT R+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 548 LHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKN 607
LH A+ G L V+ L RG NV + TPL +AAR GH + + L+ N A + K
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 608 ARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGKG 655
+T L A + N +L++ + L GH H +G
Sbjct: 78 KDDQTPLHCAAR-IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 124
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Query: 476 NGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFAL 535
NG + + +AA GH+EV + L+ AGADV +K+G+T + L+ N + ++ K++LE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGA 59
Query: 536 EKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCEL 595
+ ++ G LH AAR G L+ V+LL G VN D +G TPL LAAR GH + +L
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 596 LISNGA 601
L+ GA
Sbjct: 120 LLEAGA 125
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LH A G V +LL GAD + +T P+HLAAR G+ +V+ L+++G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT---PLHLAARNGHLEVVKLLLEAG 58
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N K ++G T L ++A+ E VK+L +AGAD +G++ +A N
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LH A G V +LL GAD + +T P+HLAAR G+ +V+ L+++G
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT---PLHLAARNGHLEVVKLLLEAG 91
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGA 397
D+N K ++G T L ++A+ E VK+L +AGA
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 38/159 (23%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
P+HLAAR G+ +V+ L+++G D+N K ++G T L ++A+ E VK+L +AGAD
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 403 SVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
+G+ +PL A+ G + +K L
Sbjct: 65 DKNGR-------------------------------------TPLHLAARNGHLEVVKLL 87
Query: 463 IGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGA 501
+ +++ +D NG + + +AA GH+EV + L+ AGA
Sbjct: 88 L-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 27/122 (22%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPA 140
T L LAA +G++ +VK LL GADVN K G +A R GHLE++++LL+AGA A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 141 CEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINAT 200
++ +G+ L H+A + G ++VV L++ G D+NA
Sbjct: 64 KDK-------NGRTPL------------HLAARN-------GHLEVVKLLLEAGADVNAK 97
Query: 201 DR 202
D+
Sbjct: 98 DK 99
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 39/161 (24%)
Query: 372 SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIR 431
+G T L ++A+ E VK+L +AGAD +G+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR------------------------ 36
Query: 432 SGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVE 491
+PL A+ G + +K L+ +++ +D NG + + +AA GH+E
Sbjct: 37 -------------TPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 492 VFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532
V + L+ AGADV +K+G+T + L+ N + ++ K++LE
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLE 122
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
K+ T L LAA +G++ +VK LL GADVN K G +A R GHLE++++LL+AGA
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 137 SQPACEE 143
A ++
Sbjct: 93 DVNAKDK 99
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
K+ T L LAA +G++ +VK LL GADVN K G +A R GHLE++++LL+AGA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV +K G T + L+ + ++ E V+L+ + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAK 64
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G+ LH AAR G L+ V +L G VN D DGYTPL LAAREGH + E+L+ G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+T LA N +
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGN 146
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 540 RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISN 599
++ G+ LH AAR G L+ V +L G VN D DGYTPL LAAREGH + E+L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 600 GAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGKGTP 657
GA + K+ G T L LA + + E+ +L+ G V K GK TP
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHL----------EIVEVLLKAGADVNAQDKFGK-TP 137
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ +D +G++ + +AA +GH+E+ L+ AGADV +K G T + L+ + ++ E
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE- 85
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
V+L+ + ++ G+ LH AAR G L+ V +L G VN D G TP LA G
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145
Query: 589 HGPMCELL 596
+ + E+L
Sbjct: 146 NEDIAEVL 153
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N K + G T L ++A+ E V+VL KAGAD G++ +A N
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDN 144
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 34/149 (22%)
Query: 63 REGKPSEVRVEFE-------EFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + K T L LAA G++ +V+ LL GADVN K G+
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 116 TT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHS 174
+A REGHLEI+E+LLKAGA A ++ D P
Sbjct: 71 PLHLAAREGHLEIVEVLLKAGADVNAKDK--------------------DGYTP------ 104
Query: 175 LVTACCRGFVDVVDTLMKCGVDINATDRL 203
L A G +++V+ L+K G D+NA D+
Sbjct: 105 LHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N K + G T L ++A+ E V+VL KAGAD G + +A
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKA 395
D+N + + G+T ++ E+ +VL KA
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLKA 134
K T L LAA G++ +V+ LL GADVN Q F +A+ G+ +I E+L KA
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G+ + ++L+ GADV + GKT + L+ N + ++ K++L + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVV-KLLLSQGADPNAK 66
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
++ G LH AA G + V+LL S+G N D DG TPL LAA GH + +LL+S G
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 601 AVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGG 644
A + ++ G T L LAR++ + +EV ++L GG
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGN----------EEVVKLLEKQGG 160
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 510 GKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
GK I +E N N D K +LE + ++ G LH AA G + V+LL S+G
Sbjct: 5 GKRLIEAAE-NGNKDRV-KDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 570 VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKN 620
N D DG TPL LAA GH + +LL+S GA + K++ G+T L LA +N
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+T LH A G V +LLS GAD KT P+HLAA G+ +V+ L+ G
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT---PLHLAAENGHKEVVKLLLSQG 93
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D N K G+T L ++A+ +E VK+L GAD G++ +A
Sbjct: 94 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ L+ A G V LL GAD KT P+HLAA G+ +V+ L+ G
Sbjct: 5 GKRLIE-AAENGNKDRVKDLLENGADVNASDSDGKT---PLHLAAENGHKEVVKLLLSQG 60
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQ 423
D N K G+T L ++A+ +E VK+L GAD G++ +A N G +
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN----GHK 116
Query: 424 RAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
V ++ G P +S+ +PL + G+ +K L
Sbjct: 117 EVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+T LH A G V +LLS GAD KT P+HLAA G+ +V+ L+ G
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT---PLHLAAENGHKEVVKLLLSQG 126
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAG 396
D NT G T L ++ ++ EE VK+L K G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AA G V+ L+++G D+N G+T L ++A+ +E VK+L GAD G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
++ +A N G + V ++ G P + + +PL A+ G +K L+ +
Sbjct: 71 KTPLHLAAEN----GHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL-SQ 125
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSG 510
+ + D +G + + +A G+ EV VKLL K G
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEV----------VKLLEKQG 159
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFAT-TIAVREGHLEILEILLKAGASQPACE 142
L AA +GN VK LL GADVN G +A GH E++++LL GA A +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ +G + +LL+ G+D + L A G +VV L+ G
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 196 DINATD 201
D N +D
Sbjct: 128 DPNTSD 133
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFAT-TIAVREGHLEILEILLKAGAS 137
T L LAA +G+ +VK LLS GAD N K G +A GH E++++LL GA
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV +K G T + L+ + ++ E V+L+ + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAK 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G+ LH AAR G L+ V +L G VN D DGYTPL LAAREGH + E+L+ G
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 540 RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISN 599
++ G+ LH AAR G L+ V +L G VN D DGYTPL LAAREGH + E+L+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 600 GAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGK 654
GA + K+ G T L LA + + E+ +L+ G V K GK
Sbjct: 103 GADVNAKDKDGYTPLHLAAREGHL----------EIVEVLLKAGADVNAQDKFGK 147
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N K + G T L ++A+ E V+VL KAGAD G++A I+ N
Sbjct: 104 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 156
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N K + G T L ++A+ E V+VL KAGAD G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
++PL A+ G + ++ L+ +
Sbjct: 81 -------------------------------------YTPLHLAAREGHLEIVEVLL-KA 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ +D +G++ + +AA +GH+E+ L+ AGADV +K GKTA +S N N DL
Sbjct: 103 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 34/149 (22%)
Query: 63 REGKPSEVRVEFE-------EFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + K T L LAA G++ +V+ LL GADVN K G+
Sbjct: 23 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 82
Query: 116 TT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHS 174
+A REGHLEI+E+LLKAGA A ++ D P
Sbjct: 83 PLHLAAREGHLEIVEVLLKAGADVNAKDK--------------------DGYTP------ 116
Query: 175 LVTACCRGFVDVVDTLMKCGVDINATDRL 203
L A G +++V+ L+K G D+NA D+
Sbjct: 117 LHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N K + G T L ++A+ E V+VL KAGAD G + +A
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 120
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVL 392
D+N + + G+TA IS E+ ++L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEIL 131
K T L LAA G++ +V+ LL GADVN Q F A I++ G+ ++ EIL
Sbjct: 111 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G+ + ++L+ GADV + G+T + + + ++ K+++ + +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIV-KLLISKGADVNAK 66
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
++ G LH AA+ G + V+LL S+G VN D DG TPL AA+EGH + +LLIS G
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 601 AVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGG 644
A + ++ G T L LAR++ + +E+ ++L GG
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGN----------EEIVKLLEKQGG 160
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LH+A G V +L+S GAD +T P+H AA+ G+ IV+ LI G
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT---PLHYAAKEGHKEIVKLLISKG 93
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N K G T L +AK +E VK+L GAD G++ +A
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LH+A G V +L+S GAD +T P+H AA+ G+ IV+ LI G
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT---PLHYAAKEGHKEIVKLLISKG 126
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAG 396
D+NT G T L ++ ++ EE VK+L K G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AA G V+ LI++G D+N G T L +AK +E VK+L GAD G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+ +PL + A+ G +K LI +
Sbjct: 71 R-------------------------------------TPLHYAAKEGHKEIVKLLISK- 92
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ +D +G + + AA +GH E+ + L+ GADV + G+T + L+ + N ++
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIV 152
Query: 527 E 527
+
Sbjct: 153 K 153
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFAT-TIAVREGHLEILEILLKAGASQPACE 142
L AA +GN VK L+ GADVN G A +EGH EI+++L+ GA A +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ G + +LL+ G+D+ + L A G ++V L+ G
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 196 DINATD 201
D+N +D
Sbjct: 128 DVNTSD 133
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVRE-GHLEILEILLKAG 135
T L AA G+ +VK L+S GADVN G RE G+ EI+++L K G
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G+ + ++L+ GADV + G+T + + N + ++ K+++ + +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVV-KLLISKGADVNAK 66
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
++ G LH AA G + V+LL S+G VN D DG TPL AA GH + +LLIS G
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 601 AVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGG 644
A + ++ G T L LAR++ + +EV ++L GG
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGN----------EEVVKLLEKQGG 160
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LHHA G V +L+S GAD +T P+H AA G+ +V+ LI G
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT---PLHHAAENGHKEVVKLLISKG 93
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N K G T L +A+ +E VK+L GAD G++ +A
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LHHA G V +L+S GAD +T P+H AA G+ +V+ LI G
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT---PLHHAAENGHKEVVKLLISKG 126
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAG 396
D+NT G T L ++ ++ EE VK+L K G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 7/152 (4%)
Query: 311 AILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKT 370
A G V L+ GAD +T P+H AA G+ +V+ LI G D+N K
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRT---PLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 371 ESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDII 430
G T L +A+ +E VK+L GAD G++ A N G + V +I
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN----GHKEVVKLLI 123
Query: 431 RSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
G +S+ +PL + G+ +K L
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 41/185 (22%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AA G V+ LI++G D+N G T L +A+ +E VK+L GAD G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+ +PL A+ G +K LI +
Sbjct: 71 R-------------------------------------TPLHHAAENGHKEVVKLLISK- 92
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCD-- 524
+++ +D +G + + AA GH EV + L+ GADV + G+T + L+ + N +
Sbjct: 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVV 152
Query: 525 -LFEK 528
L EK
Sbjct: 153 KLLEK 157
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFAT-TIAVREGHLEILEILLKAGASQPACE 142
L AA +GN VK L+ GADVN G A GH E++++L+ GA A +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ +G + +LL+ G+D+ + L A G +VV L+ G
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 196 DINATD 201
D+N +D
Sbjct: 128 DVNTSD 133
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ +D +G++ + +AA +GH+E+ L+ AGADV +K G T + L+ + ++ E
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE- 85
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
V+L+ + ++ G+ LH AAR G L+ V +L G VN D G TP LA REG
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145
Query: 589 HGPMCELL 596
H + E+L
Sbjct: 146 HEDIAEVL 153
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 540 RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISN 599
++ G+ LH AAR G L+ V +L G VN D DGYTPL LAAREGH + E+L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 600 GAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGKGTPHR 659
GA + K+ G T L LA + + E+ +L+ G V K GK TP
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHL----------EIVEVLLKAGADVNAQDKFGK-TPFD 139
Query: 660 KDIR 663
IR
Sbjct: 140 LAIR 143
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N K + G T L ++A+ E V+VL KAGAD G++ +A
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 34/149 (22%)
Query: 63 REGKPSEVRVEFE-------EFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + K T L LAA G++ +V+ LL GADVN K G+
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 116 TT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHS 174
+A REGHLEI+E+LLKAGA A + D P
Sbjct: 71 PLHLAAREGHLEIVEVLLKAGADVNAKD--------------------KDGYTP------ 104
Query: 175 LVTACCRGFVDVVDTLMKCGVDINATDRL 203
L A G +++V+ L+K G D+NA D+
Sbjct: 105 LHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N K + G T L ++A+ E V+VL KAGAD G + +A
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKA 395
D+N + + G+T ++ + E+ +VL KA
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLKA 134
K T L LAA G++ +V+ LL GADVN Q F +A+REGH +I E+L KA
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G+ + ++L+ GAD + G+T + + N + ++ K++L + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAK 66
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
++ G LH AA G + V+LL S+G N D DG TPL AA GH + +LL+S G
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 601 AVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGG 644
A + ++ G T L LAR++ + +E+ ++L GG
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGN----------EEIVKLLEKQGG 160
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LH+A G V +LLS GAD +T P+H AA G+ IV+ L+ G
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT---PLHYAAENGHKEIVKLLLSKG 93
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D N K G T L +A+ +E VK+L GAD G++ +A
Sbjct: 94 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LH+A G V +LLS GAD +T P+H AA G+ IV+ L+ G
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT---PLHYAAENGHKEIVKLLLSKG 126
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAG 396
D NT G T L ++ ++ EE VK+L K G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 421 GFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSA 480
G + V D++ +G P +S+ +PL + A+ G +K L+ + + + +D +G +
Sbjct: 15 GNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTP 73
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
+ AA GH E+ + L+ GAD + G+T
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRT---------------------------- 105
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
LH AA G + V+LL S+G N D DG TPL LA G+ + +LL G
Sbjct: 106 ------PLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 8/159 (5%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ L+ A G V LL GAD +T P+H AA G+ IV+ L+ G
Sbjct: 5 GKRLIE-AAENGNKDRVKDLLENGADPNASDSDGRT---PLHYAAENGHKEIVKLLLSKG 60
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQ 423
D N K G T L +A+ +E VK+L GAD G++ A N G +
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN----GHK 116
Query: 424 RAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
V ++ G P +S+ +PL + G+ +K L
Sbjct: 117 EIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AA G V+ L+++G D N G T L +A+ +E VK+L GAD G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
++ A N G + V ++ G P + + +PL + A+ G +K L+ +
Sbjct: 71 RTPLHYAAEN----GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK- 125
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSG 510
+ + D +G + + +A G+ E+ VKLL K G
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEI----------VKLLEKQG 159
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFAT-TIAVREGHLEILEILLKAGASQPACE 142
L AA +GN VK LL GAD N G A GH EI+++LL GA A +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ +G + +LL+ G+D + L A G ++V L+ G
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 196 DINATD 201
D N +D
Sbjct: 128 DPNTSD 133
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVRE-GHLEILEILLKAG 135
T L AA +G+ +VK LLS GAD N G RE G+ EI+++L K G
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + +G T + L+ + ++ E V+L+ + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVE-VLLKNGADVNAK 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
++ G LH AARRG L+ V +L G VN D G+TPL LAA+ GH + E+L+ NG
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 71/150 (47%), Gaps = 36/150 (24%)
Query: 63 REGKPSEVRVEFEEFKSDVTA--------LFLAAHSGNVTLVKKLLSTGADVNQKLFRGF 114
R G+ EVR+ +DV A L LAAH G++ +V+ LL GADVN K G
Sbjct: 23 RAGQDDEVRILMAN-GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV 81
Query: 115 ATT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVH 173
+A R GHLEI+E+LLK GA A + HG P
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASD-------SHG-------------FTP----- 116
Query: 174 SLVTACCRGFVDVVDTLMKCGVDINATDRL 203
L A RG +++V+ L+K G D+NA D+
Sbjct: 117 -LHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N + +G T L ++A + E V+VL K GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV------- 73
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
N S V +PL A+ G + ++ L+ +
Sbjct: 74 ---------------------------NAKDSLGV---TPLHLAARRGHLEIVEVLL-KN 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D +GF+ + +AA +GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAAR G+ IV+ L+ +G
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVT---PLHLAARRGHLEIVEVLLKNG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++AK E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 540 RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISN 599
R+ G+ LH AA G L+ V +L G VN D G TPL LAAR GH + E+L+ N
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 600 GAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGK 654
GA + ++ G T L LA K + E+ +L+ G V K GK
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHL----------EIVEVLLKNGADVNAQDKFGK 147
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A+AG ++ L+ +++ +D G++ + +AA GH+E+ L+ GADV
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 507 NKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR 566
+ G T + L+ + ++ E V+L+ + ++ GF LH AA+RG L+ V +L
Sbjct: 77 DSLGVTPLHLAARRGHLEIVE-VLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 567 GYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
G VN D G T ++ G+ + E+L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD + F P+HLAA+ G+ IV+ L+ +G
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNA---SDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 145 LLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATD 201
LLEA+ GQ +LM G+D+ R L A G +++V+ L+K G D+NA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 202 RL 203
L
Sbjct: 78 SL 79
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + G T + L N + ++ E V+L++A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIE-VLLKYAADVNAS 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G+ LH AA RG L+ V +L G VN D GYTPL LAA +GH + E+L+ G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G T LH + G + VLL AD + K+ + P+HLAA G+ IV+ L+
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAADVNA---SDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
G D+N G T L ++A+ E V+VL K GAD G++A I+ N
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN + G + V GHLEI+E+LLK A A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 143 EA----LLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
++ L A+ G + E+L+ G+D+ + L A G +++V+ L+K G
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 138 DVNAQDKF 145
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
KS T L LAA+ G++ +V+ LL GADVN ++G+ +A +GHLEI+E+LLK GA
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 42/183 (22%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N G T L + E ++VL K AD SG
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI--G 464
++PL A G + ++ L+ G
Sbjct: 81 -------------------------------------WTPLHLAAYRGHLEIVEVLLKYG 103
Query: 465 REELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCD 524
+ +DYQ G++ + +AA GH+E+ L+ GADV +K GKTA +S N N D
Sbjct: 104 ADVNAMDYQ---GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 525 LFE 527
L E
Sbjct: 161 LAE 163
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH G L+ + +L VN D G+TPL LAA GH + E+L+ GA
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 604 DIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGK 654
+ + +G T L LA ++ + E+ +L+ G V K GK
Sbjct: 107 NAMDYQGYTPLHLAAEDGHL----------EIVEVLLKYGADVNAQDKFGK 147
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 288 ILRMLLQHLS--YNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIH 345
I+ +LL++ + S G T LH A G V VLL GAD + P+H
Sbjct: 62 IIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA---MDYQGYTPLH 118
Query: 346 LAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
LAA G+ IV+ L+ G D+N + + G+TA IS E+ ++L K
Sbjct: 119 LAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+PL V G + ++ L+ + +++ D +G++ + +AA +GH+E+ L+ GADV
Sbjct: 49 TPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 505 LLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLT 564
++ G T LH AA G L+ V +L
Sbjct: 108 AMDYQGYT----------------------------------PLHLAAEDGHLEIVEVLL 133
Query: 565 SRGYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
G VN D G T ++ G+ + E+L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 38/243 (15%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
P+H AA G+ I L+ +G +++T +E T LM +A+ E VK L KAGA LV
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA---LV 70
Query: 403 SVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
S+ L A+ G ++ L
Sbjct: 71 DPKDAEGSTC----------------------------------LHLAAKKGHYEVVQYL 96
Query: 463 IGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQN 522
+ +++++ QDD G++ ++ A HV++ + L+ G+D+ + + + + +
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 523 CDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLM 582
D+ E ++L + N G LH AAR D V L SR V + + +G TPL
Sbjct: 157 VDIAE-ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215
Query: 583 LAA 585
A+
Sbjct: 216 CAS 218
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 468 LNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
+N + N S + AA GHV++ LV AGA++ ++ +T +M + N + + +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 528 KVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRG-YGVNVPDGDGYTPLMLAAR 586
++ AL ++A G LH AA++G + V+ L S G VN D G+TP++ A
Sbjct: 62 YLIKAGALVDP-KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 587 EGHGPMCELLISNGAVCDIKNARGETALSLA 617
H + +LL+S G+ +I++ L A
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWA 151
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 3/180 (1%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGA-DV 503
+PLM A+ + A+K LI L +D +D G + + +AA KGH EV + L+ G DV
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 504 KLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLL 563
+ G T ++ + ++ DL K++L + R+ LH AA G +D +L
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLV-KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 564 TSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSM 623
+ ++ + G +PL +AARE L +S + +KN GET L A NS +
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPA 140
T L AA + ++ VK L+ GA V+ K G +A ++GH E+++ LL G
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 141 CEE-----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMK 192
C++ ++ A+ + L +LL+ GSD+ IR + L A G VD+ + L+
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Query: 193 CGVDINATD 201
D++A +
Sbjct: 166 AKCDLHAVN 174
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 320 VAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMI 379
V +LLS G+D IR + +H AA G I + L+ + CDL+ G++ L I
Sbjct: 127 VKLLLSKGSDIN--IRDNEENI-CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 380 SAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN---WWSVGFQRAVLD 428
+A+ + +CV + +D L + G++ A N W ++ +A+ D
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 119 AVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELLMGSD-LIRPHVAVH 173
A GH++I +L++AGA+ C E L+EA+ + + L+ + L+ P A
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 174 S--LVTACCRGFVDVVDTLMKCG-VDINATD 201
S L A +G +VV L+ G +D+N D
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + G T + L+ N + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVE-VLLKNGADVNAS 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA G L+ V +L G VN D DG+TPL LAA+ GH + E+L+ +G
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T T P+HLAA G+ IV+ L+ G
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGIT---PLHLAAATGHLEIVEVLLKHG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++AKY E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGF 422
G DL K L+ +A+ Q++ V++L GAD G + +A SN G
Sbjct: 11 GSDLGKK-------LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASN----GH 59
Query: 423 QRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVM 482
V ++++G +S++ +PL A G + ++ L+ + +++ D++G + +
Sbjct: 60 LEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLH 118
Query: 483 VAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
+AA GH+E+ L+ GADV +K GKTA +S N N DL E
Sbjct: 119 LAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 63 REGKPSEVRV------EFEEFKSD-VTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + +D T L LAA +G++ +V+ LL GADVN G
Sbjct: 23 RAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGIT 82
Query: 116 TT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHS 174
+A GHLEI+E+LLK GA A + H +H
Sbjct: 83 PLHLAAATGHLEIVEVLLKHGADVNAYDN-----------------------DGHTPLH- 118
Query: 175 LVTACCRGFVDVVDTLMKCGVDINATDRL 203
A G +++V+ L+K G D+NA D+
Sbjct: 119 --LAAKYGHLEIVEVLLKHGADVNAQDKF 145
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T + P+HLAA G+ IV+ L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNA---TDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N +G T L ++A E V+VL K GAD G + +A
Sbjct: 71 ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA+ G+ IV+ L+ G
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHT---PLHLAAKYGHLEIVEVLLKHG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVL 392
D+N + + G+TA IS E+ ++L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN G+ +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
L G I P L A G +++V+ L+K G D+NA D
Sbjct: 78 -----------------LTG---ITP------LHLAAATGHLEIVEVLLKHGADVNAYDN 111
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 59 EVVLREGKPSEVRVEFEEFKSD-VTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFAT 116
EV+L+ G + + +D T L LAA G++ +V+ LL GADVN Q F A
Sbjct: 97 EVLLKHG------ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 117 TIAVREGHLEILEIL 131
I++ G+ ++ EIL
Sbjct: 151 DISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 302 HYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLID 361
HYGRT LH A G V VLL GAD + T T P+HLAA LG+ IV+ L+
Sbjct: 33 HYGRTPLHMAAAVGHLEIVEVLLRNGADVNA-VDTNGTT--PLHLAASLGHLEIVEVLLK 89
Query: 362 SGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
G D+N K +G T L ++A + E V+VL K GAD G++A I+
Sbjct: 90 YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 141
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GAD + G+T + ++ + ++ E V+L +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVE-VLLRNGADVNAV 64
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA G L+ V +L G VN D G TPL LAA GH + E+L+ +G
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 601 AVCDIKNARGETALSLA 617
A + ++ G+TA ++
Sbjct: 125 ADVNAQDKFGKTAFDIS 141
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D N G T L ++A E V+VL + GAD V +G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+ PL A G + ++ L+ +
Sbjct: 69 TT-------------------------------------PLHLAASLGHLEIVEVLL-KY 90
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ +D G + + +AA GH+E+ L+ GADV +K GKTA +S N DL
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLA 150
Query: 527 E 527
E
Sbjct: 151 E 151
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GAD N G +A GHLEI+E+LL+ GA A +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ G + E+L+ G+D+ + + L A G +++V+ L+K G
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 126 DVNAQDKF 133
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFAT-TIAVREGHLEILEILLKAGASQPA 140
T L LAA G++ +V+ LL GADVN K G +A GHLEI+E+LLK GA A
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 141 CEE 143
++
Sbjct: 130 QDK 132
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 35/152 (23%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+PL A G + ++ L+ R +++ D NG + + +AAS GH+E+ L+ GADV
Sbjct: 37 TPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 505 LLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLT 564
++A G L+ AA G L+ V +L
Sbjct: 96 A----------------------------------KDATGITPLYLAAYWGHLEIVEVLL 121
Query: 565 SRGYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
G VN D G T ++ G+ + E+L
Sbjct: 122 KHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 81 VTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEIL 131
+T L+LAA+ G++ +V+ LL GADVN Q F A I++ G+ ++ EIL
Sbjct: 102 ITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV ++ +G T + L+ ++ + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVE-VLLKHGADVDAA 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ GF LH AA G L+ V +L G VN D G TPL LAA EGH + E+L+ G
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A + G V VLL GAD F P+HLAA G+ IV+ L+ G
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDA---ADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N +G T L ++A E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 38/179 (21%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ LI +G D+N +G T L ++A E V+VL K GAD V G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
F+PL A G + ++ L+ +
Sbjct: 81 -------------------------------------FTPLHLAAMTGHLEIVEVLL-KY 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDL 525
+++ D G + + +AA +GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
YG T LH A + G V VLL GAD T T P+HLAA G+ IV+ L+
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGST---PLHLAADEGHLEIVEVLLKY 135
Query: 363 GCDLNTKTESGETALMISAKYKQEECVK 390
G D+N + + G+TA IS E+ K
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN G +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 143 ----EALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ G + E+L+ G+D+ L A G +++V+ L+K G
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 138 DVNAQDKF 145
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 16 AEVSQRLLEATLAGDLKSATECIADPYVDVNFV----------GAVSLKTRKTEVVLREG 65
+++ ++LLEA AG IA+ DVN V AVS EV+L+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANG-ADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 66 KPSEVRVEFEEFKSDV---TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVR 121
+ +DV T L LAA +G++ +V+ LL GADVN G +A
Sbjct: 71 ADVDA--------ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAAD 122
Query: 122 EGHLEILEILLKAGASQPACEE 143
EGHLEI+E+LLK GA A ++
Sbjct: 123 EGHLEIVEVLLKYGADVNAQDK 144
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T P+HLAA G+ IV+ L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVRILIANGADVNA---VDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D++ G T L ++A E V+VL K GAD ++G + +A
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 444 FSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADV 503
+PL A +G + ++ L+ + ++D D GF+ + +AA GH+E+ L+ GADV
Sbjct: 48 LTPLHLAAVSGHLEIVEVLL-KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 504 KLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVR 561
+ +G T + L+ + ++ E V+L++ + ++ G A + G+ D +
Sbjct: 107 NAFDMTGSTPLHLAADEGHLEIVE-VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEI 127
T L LAA G++ +V+ LL GADVN Q F A I++ G+ ++
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + +G T + L+ + + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVE-VLLKHGADVDAS 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G+ LH AA G L+ V +L G VN D DG TPL LAA+ G+ + E+L+ +G
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD + + P+HLAA G+ IV+ L+ +G
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDA---SDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++AK+ E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 36/157 (22%)
Query: 56 RKTEVVLREGKPSEVRVEFEEFKSDVTA--------LFLAAHSGNVTLVKKLLSTGADVN 107
RK R G+ EVR+ +DV A L LAA+SG++ +V+ LL GADV+
Sbjct: 16 RKLLEAARAGQDDEVRILMAN-GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 108 QKLFRGFATT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLI 166
G+ +A GHLEI+E+LLK GA A M SD +
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA--------------------MDSDGM 114
Query: 167 RPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDRL 203
P L A G++++V+ L+K G D+NA D+
Sbjct: 115 TP------LHLAAKWGYLEIVEVLLKHGADVNAQDKF 145
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 288 ILRMLLQHLSY--NSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIH 345
I+ +LL+H + S +G T LH A G V VLL GAD T P+H
Sbjct: 62 IVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT---PLH 118
Query: 346 LAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
LAA+ GY IV+ L+ G D+N + + G+TA IS E+ ++L K
Sbjct: 119 LAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N +G T L ++A E V+VL K GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV------- 73
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+S+V ++PL A G + ++ L+ +
Sbjct: 74 ------------------------------DASDVFGYTPLHLAAYWGHLEIVEVLL-KN 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D +G + + +AA G++E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + G T + L+ + ++ E V+L+ + R
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVE-VLLKHGADVNAR 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G+ LH AA G L+ V +L G VN D G TPL LAA GH + E+L+ +G
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N + G T L ++A E V+VL K GAD G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
++PL A G + ++ L+ +
Sbjct: 81 -------------------------------------WTPLHLAADNGHLEIVEVLL-KY 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ QD G + + +AA +GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A+AG ++ L+ +++ DD G + + +AA GH E+ L+ GADV
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 507 NKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR 566
+ G T + L+ N + ++ E V+L++ + ++A G LH AA RG L+ V +L
Sbjct: 77 DTDGWTPLHLAADNGHLEIVE-VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 567 GYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
G VN D G T ++ G+ + E+L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTE-FHPIHLAARLGYSTIVQSLIDS 362
G T LH A G V VLL GAD + + T+ + P+HLAA G+ IV+ L+
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGAD----VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
G D+N + G T L ++A E V+VL K GAD G++A I+ N
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G VN D G TPL LAA GH + E+L+ +GA + ++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 611 ETALSLARKNSSMK 624
T L LA N ++
Sbjct: 81 WTPLHLAADNGHLE 94
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 36/150 (24%)
Query: 63 REGKPSEVRVEFEEFKSDVTA--------LFLAAHSGNVTLVKKLLSTGADVNQKLFRGF 114
R G+ EVR+ +DV A L LAA G+ +V+ LL GADVN + G+
Sbjct: 23 RAGQDDEVRILMAN-GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW 81
Query: 115 ATT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVH 173
+A GHLEI+E+LLK GA A + +G + P
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQD-------AYG-------------LTP----- 116
Query: 174 SLVTACCRGFVDVVDTLMKCGVDINATDRL 203
L A RG +++V+ L+K G D+NA D+
Sbjct: 117 -LHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T P+HLAA +G+ IV+ L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAHDDQGST---PLHLAAWIGHPEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N + G T L ++A E V+VL K GAD G + +A
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA G+ IV+ L+ G
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT---PLHLAADRGHLEIVEVLLKHG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 59 EVVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT- 117
EV+L+ G R T L LAA +G++ +V+ LL GADVN + G
Sbjct: 64 EVLLKHGADVNAR-----DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLH 118
Query: 118 IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
+A GHLEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 119 LAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 81 VTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLK 133
+T L LAA G++ +V+ LL GADVN Q F A I++ G+ ++ EIL K
Sbjct: 114 LTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 31/230 (13%)
Query: 419 SVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGF 478
S G VL ++ G +NV + L ++ +K L+ N++ D+ G+
Sbjct: 49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGW 107
Query: 479 SAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIML-----------SELN-QNCDLF 526
+ AAS G++++ L+ GA V +N G T + + +E+N Q D+
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 527 ------EKVMLEFA---LEKGNRN-----AGGFYALHCAARRGDLDAVRLLTSRGYGVNV 572
E++ML A L G+ N G ALH AA +G + ++LL Y VN+
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Query: 573 PDGDGYTPLMLAAREGHGPMCELLISNGAVCDIK--NARGETALSLARKN 620
D DG+TPL AA G C +L+ N +CD++ N G+TA +A ++
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVEN--LCDMEAVNKVGQTAFDVADED 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 19/237 (8%)
Query: 285 TGSILRMLLQHLSYNSPHY-GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHP 343
T +LR+L + N + G T LH A + V L+ GA+ P + P
Sbjct: 53 TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP---DNEGWIP 109
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVK-VLAKAGADFGLV 402
+H AA GY I + LI G + G+T L I+ + EE ++ + + G D
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 403 SVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
+ W + G ++ +R KS A L A G LK L
Sbjct: 170 RKEEERIMLRDARQWLNSGH----INDVRHA---KSGGTA----LHVAAAKGYTEVLKLL 218
Query: 463 I-GREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSE 518
I R ++N+ +D +G++ + AA G E R LV D++ +NK G+TA +++
Sbjct: 219 IQARYDVNI--KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 81 VTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVRE-GHLEILEILLKAGA 136
+TAL A NV +VK L+ GA++NQ G+ A G+L+I E L+ GA
Sbjct: 74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 543 GGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV 602
G + C++ GD + V L RG +N + DG T L A + + M + L+ NGA
Sbjct: 41 GAVFLAACSS--GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 603 CDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHV 646
+ + G L A A LD +A L+ G HV
Sbjct: 99 INQPDNEGWIPLHAA---------ASCGYLD-IAEYLISQGAHV 132
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 80 DVTALFLAA-HSGNVTLVKKLLSTGADVNQKLFRGF-ATTIAVREGHLEILEILLKAGA- 136
D A+FLAA SG+ V +LL GAD+N G A A + ++++++ L++ GA
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 137 -SQPACEEAL---LEASCHGQARLAELLM 161
+QP E + ASC G +AE L+
Sbjct: 99 INQPDNEGWIPLHAAASC-GYLDIAEYLI 126
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 30/190 (15%)
Query: 351 GYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSAS 410
G + V L++ G D+N G TAL + + VK L + GA+ G
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 411 SIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVA--------------QAGDI 456
A S G+ +I G + N +PL Q DI
Sbjct: 111 HAAA----SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 457 AALKA-------LIGREELNLDYQDD-----NGFSAVMVAASKGHVEVFRELVYAGADVK 504
A + R+ LN + +D +G +A+ VAA+KG+ EV + L+ A DV
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226
Query: 505 LLNKSGKTAI 514
+ + G T +
Sbjct: 227 IKDYDGWTPL 236
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + SGKT + L+ + + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE-VLLKHGADVNAA 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA G L+ V +L G VN D G+TPL LAA GH + E+L+ G
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 83/224 (37%), Gaps = 75/224 (33%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD + KT P+HLAA G+ IV+ L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKT---PLHLAAIKGHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQ 423
D+N + G+T L ++A Y E V+VL K GAD G
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYG----------------- 113
Query: 424 RAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMV 483
F+PL A A
Sbjct: 114 --------------------FTPLHLAADA------------------------------ 123
Query: 484 AASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
GH+E+ L+ GADV +K GKTA +S N N DL E
Sbjct: 124 ----GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 287 SILRMLLQHLS--YNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPI 344
I+ +LL+H + + G T LH A L G V VLL GAD T F P+
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA---TDTYGFTPL 117
Query: 345 HLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
HLAA G+ IV+ L+ G D+N + + G+TA IS E+ ++L K
Sbjct: 118 HLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN + G +A +GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
+ L A+ +G + E+L+ G+D+ L A G +++V+ L+K G
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 138 DVNAQDKF 145
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLK 133
T L LAA +G++ +V+ LL GADVN Q F A I++ G+ ++ EIL K
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 25/268 (9%)
Query: 355 IVQSLIDSGCDLNTKTESGE-TALMISAKYKQEECVKVLAKAGADFGLVSVSGQSA---S 410
+VQ L++ G ++N + E G T L + + +E+ V++L + GAD L +G + +
Sbjct: 40 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
Query: 411 SIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGR-EELN 469
+IAGS F + G + F+ M A G + ALK L R +N
Sbjct: 100 AIAGSVKLLKLF-------LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152
Query: 470 L--DYQDDN------GFSAVMVAASKGHVEVFRELV-YAGADVKLLNKSGKTAI---MLS 517
L ++D G +A+M AA KGHVEV + L+ GADV + G+ A+ +LS
Sbjct: 153 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 212
Query: 518 ELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAV-RLLTSRGYGVNVPDGD 576
+ + + ++L+ + R G L A + L V RLL +N D D
Sbjct: 213 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 272
Query: 577 GYTPLMLAAREGHGPMCELLISNGAVCD 604
G T L+LA + ELL GA D
Sbjct: 273 GKTALLLAVELKLKKIAELLCKRGASTD 300
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 135/315 (42%), Gaps = 39/315 (12%)
Query: 295 HLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYST 354
++++ G T LH+A+ V +LL GAD P+ +K P LAA G
Sbjct: 50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---PVLRKKNGATPFILAAIAGSVK 106
Query: 355 IVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAG 414
+++ + G D+N G TA M +A Y + + +K L K GA+ L + +
Sbjct: 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER--- 163
Query: 415 SNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQD 474
+R G + LM A+ G + LK L+ +++ D
Sbjct: 164 ---------------LRKGGA---------TALMDAAEKGHVEVLKILLDEMGADVNACD 199
Query: 475 DNGFSAV---MVAASKGHVEVFRELVYA-GADVKLLNKSGKTAIMLSELNQNCDLFEKVM 530
+ G +A+ ++++ VE L+ GADV + + GKT ++L+ ++ L ++++
Sbjct: 200 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
Query: 531 LEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHG 590
+ +E + ++ G AL A LL RG + D +M A R
Sbjct: 260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD-----LVMTARRNYDH 314
Query: 591 PMCELLISNGAVCDI 605
+ ++L+S+GA D
Sbjct: 315 SLVKVLLSHGAKEDF 329
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 59 EVVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI 118
E++LR G +R K+ T LAA +G+V L+K LS GADVN+ F GF +
Sbjct: 76 ELLLRHGADPVLRK-----KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 130
Query: 119 -AVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLVT 177
A G ++ L+ L K GA+ L + Q RL + +L+
Sbjct: 131 EAAVYGKVKALKFLYKRGANV-----NLRRKTKEDQERLRK-----------GGATALMD 174
Query: 178 ACCRGFVDVVDTLM-KCGVDINATDRL----LLQSLKPSLHTNVDC 218
A +G V+V+ L+ + G D+NA D + L+ +L S ++V+
Sbjct: 175 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 220
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ A V++ ++L+ GA+V + G + + + + + +++L + R
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
G AA G + ++L S+G VN D G+T M AA G + L G
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 601 AVCDIKNARGETALSLARKNSSMKNDA 627
A +++ E L + ++ DA
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDA 175
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 25/268 (9%)
Query: 355 IVQSLIDSGCDLNTKTESGE-TALMISAKYKQEECVKVLAKAGADFGLVSVSGQSA---S 410
+VQ L++ G ++N + E G T L + + +E+ V++L + GAD L +G + +
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 411 SIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGR-EELN 469
+IAGS F + G + F+ M A G + ALK L R +N
Sbjct: 80 AIAGSVKLLKLF-------LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 470 L--DYQDDN------GFSAVMVAASKGHVEVFRELV-YAGADVKLLNKSGKTAI---MLS 517
L ++D G +A+M AA KGHVEV + L+ GADV + G+ A+ +LS
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192
Query: 518 ELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAV-RLLTSRGYGVNVPDGD 576
+ + + ++L+ + R G L A + L V RLL +N D D
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252
Query: 577 GYTPLMLAAREGHGPMCELLISNGAVCD 604
G T L+LA + ELL GA D
Sbjct: 253 GKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 27/167 (16%)
Query: 58 TEVVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT 117
E++LR G +R K+ T LAA +G+V L+K LS GADVN+ F GF
Sbjct: 55 VELLLRHGADPVLRK-----KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF 109
Query: 118 I-AVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLV 176
+ A G ++ L+ L K GA+ L + Q RL + +L+
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVN-----LRRKTKEDQERLRK-----------GGATALM 153
Query: 177 TACCRGFVDVVDTLM-KCGVDINATDRL----LLQSLKPSLHTNVDC 218
A +G V+V+ L+ + G D+NA D + L+ +L S ++V+
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ A V++ ++L+ GA+V + G + + + + + +++L + R
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
G AA G + ++L S+G VN D G+T M AA G + L G
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 601 AVCDIKNARGETALSLARKNSSMKNDA 627
A +++ E L + ++ DA
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDA 155
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + G T + L+ + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVE-VLLKNGADVNAD 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
++ G LH AA RG L+ V +L G VN D +G+TPL LAA GH + E+L+ +G
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 300 SPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSL 359
S H G T LH A G V VLL GAD T P+HLAA G+ +V+ L
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVT---PLHLAADRGHLEVVEVL 99
Query: 360 IDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
+ +G D+N +G T L ++A E V+VL K GAD G++A I+ N
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N G T L ++A + E V+VL K GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV------- 73
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
N S V +PL A G + ++ L+ +
Sbjct: 74 ---------------------------NADDSLGV---TPLHLAADRGHLEVVEVLL-KN 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D NGF+ + +AA+ GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD F P+HLAA +G+ IV+ L+ G
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNA---NDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN G+ +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ G + E+L+ G+D+ H L A G +++V+ L+K G
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 138 DVNAQDKF 145
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A+AG ++ L+ +++ D G++ + +AA GH+E+ L+ GADV
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 507 NKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR 566
+ G T + L+ + ++ E V+L+ + + GF LH AA G L+ V +L
Sbjct: 77 DSLGVTPLHLAADRGHLEVVE-VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 567 GYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
G VN D G T ++ G+ + E+L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 81 VTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQP 139
VT L LAA G++ +V+ LL GADVN GF +A GHLEI+E+LLK GA
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 140 ACEE----ALLEASCHGQARLAELL 160
A ++ A + +G LAE+L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + G T + L+ + ++ E V+L++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVE-VLLKYGADVNAW 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA G L+ V +L G VN D +G+TPL LAA +GH + E+L+ G
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N G T L ++AK E V+VL K GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV------- 73
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+ W + G +PL A G + ++ L+ +
Sbjct: 74 --------NAWDNYGA----------------------TPLHLAADNGHLEIVEVLL-KH 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ +D GF+ + +AA GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA G+ IV+ L+ G
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGAT---PLHLAADNGHLEIVEVLLKHG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N K G T L ++A E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN + G +A + GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ +G + E+L+ G+D+ + + L A G +++V+ L+K G
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 138 DVNAQDKF 145
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 21/160 (13%)
Query: 16 AEVSQRLLEATLAGDLKSATECIADPYVDVN---FVGAVSL----KTRKTEVV---LREG 65
+++ ++LLEA AG +A+ DVN ++G L KT E+V L+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANG-ADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 66 KPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGH 124
+ T L LAA +G++ +V+ LL GADVN K + GF +A +GH
Sbjct: 71 ADVNAWDNY-----GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGH 125
Query: 125 LEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
LEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 126 LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G VN D G+TPL LAA+ GH + E+L+ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 611 ETALSLARKNSSMK 624
T L LA N ++
Sbjct: 81 ATPLHLAADNGHLE 94
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
YG T LH A G V VLL GAD F P+HLAA G+ IV+ L+
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAK---DYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAK 394
G D+N + + G+TA IS E+ ++L K
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 35/152 (23%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+PL A+ G + ++ L+ + +++ D+ G + + +AA GH+E+ L+ GADV
Sbjct: 49 TPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV- 106
Query: 505 LLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLT 564
N +E GF LH AA G L+ V +L
Sbjct: 107 -----------------NAKDYE----------------GFTPLHLAAYDGHLEIVEVLL 133
Query: 565 SRGYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
G VN D G T ++ G+ + E+L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 473 QDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532
+DD G+S + +AAS G E+ + L+ GA V +N++G T + + ++ VML
Sbjct: 70 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI--AVML- 126
Query: 533 FALEKG-NRNAGGFY---ALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
LE G N +A Y A+H AA +G+L + +L N+ D +G TPL LA E
Sbjct: 127 --LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 184
Query: 589 HGPMCELLISNGAVCDIKNARGETALSLAR 618
+LL+S GA I+N +T L +A+
Sbjct: 185 RVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 485 ASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKG----NR 540
A G +E +E + A D L ++ + + + L+ C ++EF L+ G ++
Sbjct: 15 AYSGKLEELKESILA--DKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDK 70
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G+ LH AA G + V+ L +G VN + +G TPL AA + + +L+ G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 601 AVCDIKNARGETALSLARKNSSMK 624
A D K+ TA+ A ++K
Sbjct: 131 ANPDAKDHYEATAMHRAAAKGNLK 154
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 94/259 (36%), Gaps = 76/259 (29%)
Query: 328 ADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEE 387
AD RT + +H A G++ IV+ L+ G +N K ++G + L I+A ++E
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 88
Query: 388 CVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPL 447
VK L GA V+ +G +PL
Sbjct: 89 IVKALLGKGAQVNAVNQNG-------------------------------------CTPL 111
Query: 448 MFVAQAG--DIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKL 505
+ A +IA + G N D +D +A+ AA+KG++++ L+Y A +
Sbjct: 112 HYAASKNRHEIAVMLLEGGA---NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 168
Query: 506 LNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTS 565
+ G T LH A ++ +LL S
Sbjct: 169 QDTEGNT----------------------------------PLHLACDEERVEEAKLLVS 194
Query: 566 RGYGVNVPDGDGYTPLMLA 584
+G + + + + TPL +A
Sbjct: 195 QGASIYIENKEEKTPLQVA 213
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPA 140
TAL A +G+ +V+ LL G VN K G++ IA G EI++ LL GA A
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 141 CEE----ALLEASCHGQARLAELLM---GSDLIRPHVAVHSLVTACCRGFVDVVDTLMKC 193
+ L A+ + +A +L+ + + H ++ A +G + ++ L+
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 194 GVDINATD 201
N D
Sbjct: 163 KASTNIQD 170
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 473 QDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532
+DD G+S + +AAS G E+ + L+ GA V +N++G T + + ++ VML
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI--AVML- 125
Query: 533 FALEKG-NRNAGGFY---ALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
LE G N +A Y A+H AA +G+L + +L N+ D +G TPL LA E
Sbjct: 126 --LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 183
Query: 589 HGPMCELLISNGAVCDIKNARGETALSLAR 618
+LL+S GA I+N +T L +A+
Sbjct: 184 RVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 485 ASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKG----NR 540
A G +E +E + A D L ++ + + + L+ C ++EF L+ G ++
Sbjct: 14 AYSGKLEELKESILA--DKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G+ LH AA G + V+ L +G VN + +G TPL AA + + +L+ G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 601 AVCDIKNARGETALSLARKNSSMK 624
A D K+ TA+ A ++K
Sbjct: 130 ANPDAKDHYEATAMHRAAAKGNLK 153
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 94/259 (36%), Gaps = 76/259 (29%)
Query: 328 ADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEE 387
AD RT + +H A G++ IV+ L+ G +N K ++G + L I+A ++E
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 87
Query: 388 CVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPL 447
VK L GA V+ +G +PL
Sbjct: 88 IVKALLGKGAQVNAVNQNG-------------------------------------CTPL 110
Query: 448 MFVAQAG--DIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKL 505
+ A +IA + G N D +D +A+ AA+KG++++ L+Y A +
Sbjct: 111 HYAASKNRHEIAVMLLEGGA---NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 167
Query: 506 LNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTS 565
+ G T LH A ++ +LL S
Sbjct: 168 QDTEGNT----------------------------------PLHLACDEERVEEAKLLVS 193
Query: 566 RGYGVNVPDGDGYTPLMLA 584
+G + + + + TPL +A
Sbjct: 194 QGASIYIENKEEKTPLQVA 212
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPA 140
TAL A +G+ +V+ LL G VN K G++ IA G EI++ LL GA A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 141 CEE----ALLEASCHGQARLAELLM---GSDLIRPHVAVHSLVTACCRGFVDVVDTLMKC 193
+ L A+ + +A +L+ + + H ++ A +G + ++ L+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 194 GVDINATD 201
N D
Sbjct: 162 KASTNIQD 169
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT LH A G V +LL GAD + +T P+HLAAR G+ +V+ L+++G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT---PLHLAARNGHLEVVKLLLEAG 58
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGA 397
D+N K ++G T L ++A+ E VK+L +AGA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 34/126 (26%)
Query: 476 NGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFAL 535
NG + + +AA GH+EV + L+ AGADV +K+G+T
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP---------------------- 38
Query: 536 EKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCEL 595
LH AAR G L+ V+LL G VN D +G TPL LAAR GH + +L
Sbjct: 39 ------------LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 596 LISNGA 601
L+ GA
Sbjct: 87 LLEAGA 92
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AAR G L+ V+LL G VN D +G TPL LAAR GH + +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 604 DIKNARGETALSLARKNSSMK 624
+ K+ G T L LA +N ++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLE 82
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
P+HLAAR G+ +V+ L+++G D+N K ++G T L ++A+ E VK+L +AGAD
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 403 SVSGQSASSIAGSN 416
+G++ +A N
Sbjct: 65 DKNGRTPLHLAARN 78
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+PL A+ G + +K L+ +++ +D NG + + +AA GH+EV + L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 505 LLNKSGKTAIMLSELNQNCDLFEKVMLE 532
+K+G+T + L+ N + ++ K++LE
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVV-KLLLE 89
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
K+ T L LAA +G++ +VK LL GADVN K G +A R GHLE++++LL+AGA
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPA 140
T L LAA +G++ +VK LL GADVN K G +A R GHLE++++LL+AGA A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 141 CEE 143
++
Sbjct: 64 KDK 66
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 576 DGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVILDEV 635
+G TPL LAAR GH + +LL+ GA + K+ G T L LA +N + EV
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL----------EV 50
Query: 636 ARMLVLGGGHVLKHTKGGKGTP 657
++L+ G V K G+ TP
Sbjct: 51 VKLLLEAGADVNAKDKNGR-TP 71
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 38/130 (29%)
Query: 372 SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIR 431
+G T L ++A+ E VK+L +AGAD +G++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37
Query: 432 SGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVE 491
PL A+ G + +K L+ +++ +D NG + + +AA GH+E
Sbjct: 38 --------------PLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 492 VFRELVYAGA 501
V + L+ AGA
Sbjct: 83 VVKLLLEAGA 92
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 26/85 (30%)
Query: 118 IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLVT 177
+A R GHLE++++LL+AGA A ++ +G+ L H+A +
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAKDK-------NGRTPL------------HLAARN--- 45
Query: 178 ACCRGFVDVVDTLMKCGVDINATDR 202
G ++VV L++ G D+NA D+
Sbjct: 46 ----GHLEVVKLLLEAGADVNAKDK 66
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA+ G + R L+ GADV + +G T + L+ N ++ E V+L+ +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVE-VLLKNGADVNAS 68
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
++ G LH AA G L+ V +L G VN D G+TPL LAA G + E+L+ +G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 601 AVCDIKNARGETALSLA 617
A + ++A G TA ++
Sbjct: 129 ADVNAQDALGLTAFDIS 145
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 474 DDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533
DDNG + + +AA+ G +E+ L+ GADV + +G T + L+ + + ++ E V+L+
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVE-VLLKH 94
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
+ + G+ LH AA G L+ V +L G VN D G T ++ +G +
Sbjct: 95 GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLA 154
Query: 594 ELL 596
E+L
Sbjct: 155 EIL 157
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD + P+HLAA G+ IV+ L+ G
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNA---SDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N +G T L ++A Q E V+VL K GAD G +A I+
Sbjct: 96 ADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDIS 145
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 27/134 (20%)
Query: 81 VTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQP 139
+T L LAA +G + +V+ LL GADVN G +A +GHLEI+E+LLK GA
Sbjct: 40 LTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 140 ACEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINA 199
A + A L A G +++V+ L+K G D+NA
Sbjct: 100 AYDRA--------------------------GWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 200 TDRLLLQSLKPSLH 213
D L L + S++
Sbjct: 134 QDALGLTAFDISIN 147
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA G L+ V +L G VN D G TPL LAA +GH + E+L+ +GA
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 604 DIKNARGETALSLARKNSSMK 624
+ + G T L LA + ++
Sbjct: 99 NAYDRAGWTPLHLAALSGQLE 119
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 300 SPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSL 359
S G T LH A G V VLL GAD R T P+HLAA G IV+ L
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWT---PLHLAALSGQLEIVEVL 124
Query: 360 IDSGCDLNTKTESGETALMISAKYKQEECVKVL 392
+ G D+N + G TA IS QE+ ++L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 21/159 (13%)
Query: 17 EVSQRLLEATLAGDLKSATECIADPYVDVN----------FVGAVSLKTRKTEVVLREGK 66
++ ++LLEA AG +A+ DVN + A + + EV+L+ G
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANG-ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 67 PSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHL 125
+ +T L LAA+ G++ +V+ LL GADVN G+ +A G L
Sbjct: 64 DVNAS-----DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQL 118
Query: 126 EILEILLKAGA---SQPACEEALLEASCH-GQARLAELL 160
EI+E+LLK GA +Q A + S + GQ LAE+L
Sbjct: 119 EIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 39/184 (21%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AA G V+ L+ +G D+N ++G T L ++A Q E V+VL K GAD
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV------- 65
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+S+ A +PL A G + ++ L+ +
Sbjct: 66 ------------------------------NASDSAGITPLHLAAYDGHLEIVEVLL-KH 94
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D G++ + +AA G +E+ L+ GADV + G TA +S +NQ +
Sbjct: 95 GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDIS-INQGQEDL 153
Query: 527 EKVM 530
+++
Sbjct: 154 AEIL 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + SG T + L+ N + ++ E V+L+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-VLLKNGADVNAV 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G L AA G L+ V +L G VN D +G+TPL LAA GH + E+L+ NG
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN + G+ +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 143 EA----LLEASCHGQARLAELLM--GSDLIRPHVAVHS-LVTACCRGFVDVVDTLMKCGV 195
A L A+ G + E+L+ G+D+ + H+ L A G +++V+ L+K G
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 138 DVNAQDKF 145
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+ LAA G+ IV+ L+ +G
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT---PLRLAALFGHLEIVEVLLKNG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++A + E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 260 EEFRV----GAGLAEPYAITWCAVEYFEITG--SILRMLLQH-LSYNS-PHYGRTLLHHA 311
+E R+ GA + A W + G I+ +LL++ N+ H G T L A
Sbjct: 28 DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
Query: 312 ILCGCTGAVAVLLSCGADAQCPIRTQKTEFH-PIHLAARLGYSTIVQSLIDSGCDLNTKT 370
L G V VLL GAD + E H P+HLAA G+ IV+ L+ +G D+N +
Sbjct: 88 ALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 371 ESGETALMISAKYKQEECVKVLAK 394
+ G+TA IS E+ ++L K
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQK 167
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N + SG T L ++A E V+VL K GAD V +G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+PL A G + ++ L+ +
Sbjct: 81 -------------------------------------MTPLRLAALFGHLEIVEVLL-KN 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D G + + +AA GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLK 133
T L LAA G++ +V+ LL GADVN Q F A I++ G+ ++ EIL K
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 473 QDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532
+DD G+S + +AAS G E+ + L+ GA V +N++G T + + ++ VML
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI--AVML- 125
Query: 533 FALEKG-NRNAGGFY---ALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
LE G N +A Y A+H AA +G+L V +L N+ D +G TPL LA E
Sbjct: 126 --LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 589 HGPMCELLISNGAVCDIKNARGETALSLAR 618
+ L++ GA I+N +T L +A+
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 519 LNQNCDLFEKVMLEFALEKG----NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPD 574
L+ C ++EF L+ G +++ G+ LH AA G + V+ L +G VN +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN 103
Query: 575 GDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMK 624
+G TPL AA + + +L+ GA D K+ TA+ A ++K
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
TAL A +G+ +V+ LL G VN K G++ IA G EI++ LL GA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 484 AASKGHVE-----VFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKG 538
AA++G V+ + RELV+ A LN+ GKTA+ + E +L+
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDA----LNRFGKTALQVMMFGSTAIALE--LLKQGASPN 68
Query: 539 NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLIS 598
++ G +H AAR G LD +++L G VNVPDG G P+ LA +EGH + L
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-- 126
Query: 599 NGAVCDI--KNARGETALSLA 617
A D+ ++ARG T L LA
Sbjct: 127 -AAESDLHRRDARGLTPLELA 146
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G+T L ++ G T LL GA P + P+H AAR G+ ++ L++
Sbjct: 41 FGKTALQ-VMMFGSTAIALELLKQGA---SPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 96
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLA 393
G D+N +G + ++ + V LA
Sbjct: 97 GADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 484 AASKGHVE-----VFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKG 538
AA++G V+ + RELV+ A LN+ GKTA+ + E +L+
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDA----LNRFGKTALQVMMFGSTAIALE--LLKQGASPN 62
Query: 539 NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLIS 598
++ G +H AAR G LD +++L G VNVPDG G P+ LA +EGH + L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-- 120
Query: 599 NGAVCDI--KNARGETALSLA 617
A D+ ++ARG T L LA
Sbjct: 121 -AAESDLHRRDARGLTPLELA 140
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G+T L ++ G T LL GA P + P+H AAR G+ ++ L++
Sbjct: 35 FGKTALQ-VMMFGSTAIALELLKQGA---SPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLA 393
G D+N +G + ++ + V LA
Sbjct: 91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 473 QDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532
+DD G+S + +AAS G E+ + L+ GA V +N++G T + + ++ VML
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI--AVML- 125
Query: 533 FALEKG-NRNAGGFY---ALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
LE G N +A Y A+H AA +G+L V +L N+ D +G TPL LA E
Sbjct: 126 --LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 589 HGPMCELLISNGAVCDIKNARGETALSLAR 618
+ L++ GA I+N +T L +A+
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 519 LNQNCDLFEKVMLEFALEKG----NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPD 574
L+ C ++EF L+ G +++ G+ LH AA G + V+ L +G VN +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN 103
Query: 575 GDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMK 624
+G TPL AA + + +L+ GA D K+ TA+ A ++K
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 42/192 (21%)
Query: 328 ADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEE 387
AD RT + +H A G++ IV+ L+ G +N K ++G + L I+A +E
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87
Query: 388 CVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPL 447
VK L GA V+ +G +PL
Sbjct: 88 IVKALLVKGAHVNAVNQNG-------------------------------------CTPL 110
Query: 448 MFVAQAG--DIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKL 505
+ A +IA + G N D +D +A+ AA+KG++++ L++ A +
Sbjct: 111 HYAASKNRHEIAVMLLEGGA---NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Query: 506 LNKSGKTAIMLS 517
+ G T + L+
Sbjct: 168 QDTEGNTPLHLA 179
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
TAL A +G+ +V+ LL G VN K G++ IA G EI++ LL GA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N G T L ++A + E V+VL K GAD
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV------- 73
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+A GS +PL A G + ++ L+ +
Sbjct: 74 -NAYDTLGS-----------------------------TPLHLAAHFGHLEIVEVLL-KN 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ +DDNG + + +AA++GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA G+ IV+ L+ +G
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGST---PLHLAAHFGHLEIVEVLLKNG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N K ++G T L ++A E V+VL K GAD G++A I+ +N
Sbjct: 104 ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINN 156
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + G T + L+ + ++ E V+L+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVE-VLLKNGADVNAY 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA G L+ V +L G VN D +G TPL LAA GH + E+L+ G
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISINNGN 158
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN G+ +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 143 E----ALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGV 195
L A+ G + E+L+ G+D+ + + L A RG +++V+ L+K G
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 196 DINATDRL 203
D+NA D+
Sbjct: 138 DVNAQDKF 145
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 477 GFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALE 536
G++ + +AA GH+E+ L+ GADV + G T + L+ + ++ E V+L+ +
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVE-VLLKNGAD 105
Query: 537 KGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
++ G LH AA RG L+ V +L G VN D G T ++ G+ + E+L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA G+ IV+ L+ G
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT---PLHLAANRGHLEIVEVLLKYG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 21/160 (13%)
Query: 16 AEVSQRLLEATLAGDLKSATECIADPYVDVN---FVGAVSLKTRK-------TEVVLREG 65
+++ ++LLEA AG +A+ DVN VG L EV+L+ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANG-ADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
Query: 66 KPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGH 124
++ S T L LAAH G++ +V+ LL GADVN K G +A GH
Sbjct: 71 ADVNA---YDTLGS--TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGH 125
Query: 125 LEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
LEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 126 LEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 58 TEVVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFAT 116
EV+L+ G + + + +T L LAA+ G++ +V+ LL GADVN Q F A
Sbjct: 96 VEVLLKNGADVNAKDD-----NGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 117 TIAVREGHLEILEILLK 133
I++ G+ ++ EIL K
Sbjct: 151 DISINNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + G T + L+ + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVE-VLLKNGADVNAL 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA+RG L+ V +L G VN D G TPL LAA GH + E+L+ G
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
YG T LH A G V VLL GAD + T P+HLAA+ G+ IV+ L+
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGST---PLHLAAKRGHLEIVEVLLKY 102
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
G D+N G T L ++A E V+VL K GAD G++A I+ N
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N + G+T L ++A+ E V+VL K GAD + SG
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+ PL A+ G + ++ L+ +
Sbjct: 81 ST-------------------------------------PLHLAAKRGHLEIVEVLL-KY 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D G + + +AA GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T P+HLAAR+G+ IV+ L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAEDTYGDT---PLHLAARVGHLEIVEVLLKNG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
D+N SG T L ++AK E V+VL K GAD
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 67/150 (44%), Gaps = 36/150 (24%)
Query: 63 REGKPSEVR--------VEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGF 114
R G+ EVR V E+ D T L LAA G++ +V+ LL GADVN F G
Sbjct: 23 RAGQDDEVRILMANGADVNAEDTYGD-TPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 115 ATT-IAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVH 173
+A + GHLEI+E+LLK GA A + +
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNADDT--------------------------IGST 115
Query: 174 SLVTACCRGFVDVVDTLMKCGVDINATDRL 203
L A G +++V+ L+K G D+NA D+
Sbjct: 116 PLHLAADTGHLEIVEVLLKYGADVNAQDKF 145
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G VN D G TPL LAAR GH + E+L+ NGA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 611 ETALSLARKNSSMK 624
T L LA K ++
Sbjct: 81 STPLHLAAKRGHLE 94
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA G+ IV+ L+ G
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST---PLHLAADTGHLEIVEVLLKYG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVL 392
D+N + + G+TA IS E+ ++L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN + + +A R GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
GS P L A RG +++V+ L+K G D+NA D
Sbjct: 78 -----------------FSGS---TP------LHLAAKRGHLEIVEVLLKYGADVNADDT 111
Query: 203 L 203
+
Sbjct: 112 I 112
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 59 EVVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT- 117
EV+L+ G V +F S T L LAA G++ +V+ LL GADVN G
Sbjct: 64 EVLLKNG----ADVNALDF-SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLH 118
Query: 118 IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
+A GHLEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 119 LAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G VN D DGYTPL LAAREGH + E+L+ GA + ++ G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 611 ETALSLARKNSS 622
+TA ++ N +
Sbjct: 69 KTAFDISIDNGN 80
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD K + P+HLAAR G+ IV+ L+ +G
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAG 396
D+N + + G+TA IS E+ ++L KA
Sbjct: 59 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
L AA +G V+ L++ GADVN K G+ +A REGHLEI+E+LLKAGA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A+AG ++ L+ +++ +D +G++ + +AA +GH+E+ L+ AGADV
Sbjct: 6 LLEAARAGQDDEVRILMANGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 507 NKSGKTAIMLSELNQNCDLFE 527
+K GKTA +S N N DL E
Sbjct: 65 DKFGKTAFDISIDNGNEDLAE 85
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N K + G T L ++A+ E V+VL KAGAD G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 407 QSASSIAGSN 416
++A I+ N
Sbjct: 69 KTAFDISIDN 78
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 63 REGKPSEVRVEFE-------EFKSDVTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGF 114
R G+ EVR+ + K T L LAA G++ +V+ LL GADVN Q F
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Query: 115 ATTIAVREGHLEILEILLKAG 135
A I++ G+ ++ EIL KA
Sbjct: 71 AFDISIDNGNEDLAEILQKAA 91
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 528 KVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAARE 587
++++ + ++ G+ LH AAR G L+ V +L G VN D G T ++
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 78
Query: 588 GHGPMCELL 596
G+ + E+L
Sbjct: 79 GNEDLAEIL 87
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 143 EALLEASCHGQARLAELLM--GSDL-IRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINA 199
+ LLEA+ GQ +LM G+D+ + L A G +++V+ L+K G D+NA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 200 TDRL 203
D+
Sbjct: 64 QDKF 67
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 581 LMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLV 640
L+ AAR G +L++NGA + K+ G T L LA + + E+ +L+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL----------EIVEVLL 55
Query: 641 LGGGHVLKHTKGGK 654
G V K GK
Sbjct: 56 KAGADVNAQDKFGK 69
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH+A G V LLS GAD + T P+HLAA+ G++ IV+ L+ G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNT---PLHLAAKNGHAEIVKLLLAKG 65
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADF 399
D+N +++ G T ++ K E VK+L GAD
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA+ G + V+ L S+G VN DG TPL LAA+ GH + +LL++ GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 604 DIKNARGETALSLARKN 620
+ ++ G T LA+KN
Sbjct: 69 NARSKDGNTPEHLAKKN 85
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
P+H AA+ G++ V+ L+ G D+N +++ G T L ++AK E VK+L GAD
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 403 SVSGQSASSIAGSN 416
S G + +A N
Sbjct: 72 SKDGNTPEHLAKKN 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 34/131 (25%)
Query: 476 NGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFAL 535
+G + + AA GH E ++L+ GADV +K G T
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNT----------------------- 44
Query: 536 EKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCEL 595
LH AA+ G + V+LL ++G VN DG TP LA + GH + +L
Sbjct: 45 -----------PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93
Query: 596 LISNGAVCDIK 606
L + GA + +
Sbjct: 94 LDAKGADVNAR 104
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFAT-TIAVREGHLEILEILLKAGA 136
K T L AA +G+ VKKLLS GADVN + G +A + GH EI+++LL GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 576 DGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVILDEV 635
DG TPL AA+ GH + L+S GA + ++ G T L LA KN E+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA----------EI 57
Query: 636 ARMLVLGGGHVLKHTKGG-------KGTPHRKDIRMLGSEG----VLRWGNS 676
++L+ G V +K G K H + +++L ++G WG+S
Sbjct: 58 VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGA 136
K T L LAA +G+ +VK LL+ GADVN + G +A + GH EI+++L GA
Sbjct: 40 KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 445 SPLMFVAQAGDIAALKALIGR-EELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADV 503
+PL A+ G +K L+ + ++N +D G + + +AA GH E+ + L+ GADV
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 504 KLLNKSGKTAIMLSELNQNCDLFE 527
+K G T L++ N + ++ +
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVK 92
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V +LL+ GAD + T P HLA + G+ IV+ L G
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNT---PEHLAKKNGHHEIVKLLDAKG 98
Query: 364 CDLNTKT 370
D+N ++
Sbjct: 99 ADVNARS 105
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + SG T + L+ + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADVNAI 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA G L+ V +L G VN D G TPL LAA GH + E+L+ +G
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N SG T L ++A Y E V+VL K GAD + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+ PL A G + ++ L+ +
Sbjct: 81 ST-------------------------------------PLHLAALIGHLEIVEVLL-KH 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D G + + +AA GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA +G+ IV+ L+ G
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGST---PLHLAALIGHLEIVEVLLKHG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G+T L ++A E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A L G V VLL GAD T P+HLAA +G+ IV+ L+ G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT---PLHLAAIMGHLEIVEVLLKHG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T + P+HLAA G+ IV+ L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNA---TDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N G T L ++A E V+VL K GAD V G + +A
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN G +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 143 ----EALLEASCHGQARLAELLM--GSDLIRPHVAVHS-----LVTACCRGFVDVVDTLM 191
L A+ G + E+L+ G+D+ AV + L A G +++V+ L+
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADV----NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 192 KCGVDINATDRL 203
K G D+NA D+
Sbjct: 134 KHGADVNAQDKF 145
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLK 133
T L LAA G++ +V+ LL GADVN Q F A I++ G+ ++ EIL K
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNR 540
++ AA G + R L+ GADV + SG T + L+ + ++ E V+L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADVNAI 76
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
+ G LH AA G L+ V +L G VN D G TPL LAA GH + E+L+ +G
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 601 AVCDIKNARGETALSLARKNSS 622
A + ++ G+TA ++ N +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 38/181 (20%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+N SG T L ++A Y E V+VL K GAD + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 407 QSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGRE 466
+ PL A G + ++ L+ +
Sbjct: 81 ST-------------------------------------PLHLAALIGHLEIVEVLL-KH 102
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLF 526
+++ D G + + +AA GH+E+ L+ GADV +K GKTA +S N N DL
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 527 E 527
E
Sbjct: 163 E 163
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA +G+ IV+ L+ G
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGST---PLHLAALIGHLEIVEVLLKHG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G+T L ++A E V+VL K GAD G++A I+ N
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A L G V VLL GAD T P+HLAA +G+ IV+ L+ G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT---PLHLAAIMGHLEIVEVLLKHG 136
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T + P+HLAA G+ IV+ L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNA---TDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N G T L ++A E V+VL K GAD V G + +A
Sbjct: 71 ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN G +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 143 ----EALLEASCHGQARLAELLM--GSDLIRPHVAVHS-----LVTACCRGFVDVVDTLM 191
L A+ G + E+L+ G+D+ AV + L A G +++V+ L+
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADV----NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 192 KCGVDINATDRL 203
K G D+NA D+
Sbjct: 134 KHGADVNAQDKF 145
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLK 133
T L LAA G++ +V+ LL GADVN Q F A I++ G+ ++ EIL K
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 484 AASKGHVE-----VFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKG 538
AA++G V+ + RELV+ A LN+ GKTA+ + E +L+
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDA----LNRFGKTALQVMMFGSPAVALE--LLKQGASPN 68
Query: 539 NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLIS 598
++A G +H AAR G LD +++L G VN D G P+ LA REGH + L
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 599 NGAVCDIKNARGETALSLARK 619
+ ++A G T L LAR+
Sbjct: 129 ESDLHH-RDASGLTPLELARQ 148
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G+T L ++ G LL GA P + P+H AAR G+ ++ L++
Sbjct: 41 FGKTALQ-VMMFGSPAVALELLKQGA---SPNVQDASGTSPVHDAARTGFLDTLKVLVEH 96
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLA 393
G D+N +G + ++ + V LA
Sbjct: 97 GADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 484 AASKGHVE-----VFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKG 538
AA++G V+ + RELV+ A LN+ GKTA+ + E +L+
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDA----LNRFGKTALQVMMFGSPAVALE--LLKQGASPN 70
Query: 539 NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLIS 598
++A G +H AAR G LD +++L G VN D G P+ LA REGH + L
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 599 NGAVCDIKNARGETALSLARK 619
+ ++A G T L LAR+
Sbjct: 131 ESDLHH-RDASGLTPLELARQ 150
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G+T L ++ G LL GA P + P+H AAR G+ ++ L++
Sbjct: 43 FGKTALQ-VMMFGSPAVALELLKQGA---SPNVQDASGTSPVHDAARTGFLDTLKVLVEH 98
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLA 393
G D+N +G + ++ + V LA
Sbjct: 99 GADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 484 AASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAG 543
AA++G +E L+ +V N G+TA+ + +L N ++ +++L A ++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGA-NPDLKDRT 69
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
GF +H AAR G LD ++ L VN+ D +G PL LAA+EGH + E L+ + A
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 603 CDIKNARGETALSLAR 618
+N +G+TA LAR
Sbjct: 130 VGHRNHKGDTACDLAR 145
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+GRT L + G LL GA+ P +T F IH AAR G +Q+L++
Sbjct: 37 FGRTALQ-VMKLGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAARAGQLDTLQTLLEF 92
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAK-AGADFGLVSVSGQSASSIA 413
D+N + G L ++AK V+ L K ++ G + G +A +A
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
N D +D GF+ + AA G ++ + L+ ADV + + G + L+ + + E
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++ A G+RN G A A G + V L+ + G G
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 87 AAHSGNVTLVKKLLSTGADVNQKLFRG-FATTIAVREGHLEILEILLKAGAS 137
AA +G + ++ LL ADVN + G +A +EGHL ++E L+K AS
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 484 AASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAG 543
AA++G +E L+ +V N G+TA+ + +L N ++ +++L A ++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGA-NPDLKDRT 69
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
GF +H AAR G LD ++ L VN+ D +G PL LAA+EGH + E L+ + A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 603 CDIKNARGETALSLAR 618
+N +G+TA LAR
Sbjct: 130 VGHRNHKGDTACDLAR 145
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+GRT L + G LL GA+ P +T F IH AAR G+ +Q+L+++
Sbjct: 37 FGRTALQ-VMKLGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEN 92
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAK-AGADFGLVSVSGQSASSIA 413
D+N + G L ++AK V+ L K ++ G + G +A +A
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
N D +D GF+ + AA G ++ + L+ ADV + + G + L+ + + E
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++ A G+RN G A A G + V L+ + G G
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 87 AAHSGNVTLVKKLLSTGADVNQKLFRG-FATTIAVREGHLEILEILLKAGASQ 138
AA +G + ++ LL ADVN + G +A +EGHL ++E L+K AS
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 470 LDY----QDDNGFSAVMVAASKGHVEVFRELVYAGA-DVKLLNKSGKTAIMLSELN--QN 522
LDY D NG +A+ + S + V ++L+ +G V N++G + IML+ L +
Sbjct: 100 LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKT 159
Query: 523 CDLFEKVMLEFALEKGNRNA----GGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGY 578
D E V+ F L GN NA G AL A G +D V+ L + VNV D DG
Sbjct: 160 QDDIETVLQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS 217
Query: 579 TPLMLAAREGHGPMCELLISNGAVCDIK--NARGETALSLA 617
T LM A GH + LL++ + CDI + G TAL +A
Sbjct: 218 TALMCACEHGHKEIAGLLLAVPS-CDISLTDRDGSTALMVA 257
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 35/176 (19%)
Query: 344 IHLAARLGYSTIVQSLIDSG-CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
+H + +VQ L+DSG C ++ + +G + +M++A L
Sbjct: 115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA-------------------LA 155
Query: 403 SVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
++ Q VL + R GNI ++ A + LM G + +KAL
Sbjct: 156 TLKTQDDI-------------ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKAL 202
Query: 463 IGREELNLDYQDDNGFSAVMVAASKGHVEVFRELV-YAGADVKLLNKSGKTAIMLS 517
+ E +++ QDD+G +A+M A GH E+ L+ D+ L ++ G TA+M++
Sbjct: 203 LACEA-DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 42 YVDVNFVGAVSLKTRK-TEVVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLL 100
Y + +LKT+ E VL+ + + + + + TAL LA G V +VK LL
Sbjct: 146 YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ--AGQTALMLAVSHGRVDVVKALL 203
Query: 101 STGADVNQKLFRG-FATTIAVREGHLEILEILLKAGASQPACE---------EALLEASC 150
+ ADVN + G A A GH EI +LL P+C+ AL+ A
Sbjct: 204 ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAV----PSCDISLTDRDGSTALMVALD 259
Query: 151 HGQARLAELL 160
GQ+ +A +L
Sbjct: 260 AGQSEIASML 269
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD R T P+HLAA + IV+ L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNANDRKGNT---PLHLAADYDHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++A + E V+VL K GAD G++A I+ N
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA L+ V +L G VN D DG TPL LAA GH + E+L+ +GA
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A V VLL GAD T P+HLAA G+ IV+ L+ G
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST---PLHLAALFGHLEIVEVLLKHG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN +G +A HLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
+D P L A G +++V+ L+K G D+NA D+
Sbjct: 78 --------------------NDGSTP------LHLAALFGHLEIVEVLLKHGADVNAQDK 111
Query: 203 L 203
Sbjct: 112 F 112
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 63 REGKPSEVRVEFEEFKSDVTA--------LFLAAHSGNVTLVKKLLSTGADVNQKLFRGF 114
R G+ EVR+ +DV A L LAA ++ +V+ LL GADVN G
Sbjct: 23 RAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 115 ATT-IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELLM 161
+A GHLEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+PL A + ++ L+ + +++ D++G + + +AA GH+E+ L+ GADV
Sbjct: 49 TPLHLAADYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Query: 505 LLNKSGKTAIMLSELNQNCDLFE 527
+K GKTA +S N N DL E
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAE 130
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLK 133
T L LAA G++ +V+ LL GADVN Q F A I++ G+ ++ EIL K
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 34/128 (26%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ D G + + +AA H+E+ L+ GADV + G T
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST---------------- 82
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
LH AA G L+ V +L G VN D G T ++ G
Sbjct: 83 ------------------PLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 589 HGPMCELL 596
+ + E+L
Sbjct: 125 NEDLAEIL 132
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 484 AASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAG 543
AA++G +E L+ +V N G+TA+ + +L N ++ +++L A ++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGA-NPDLKDRT 69
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
GF +H AAR G LD ++ L VN+ D +G PL LAA+EGH + E L+ + A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 603 CDIKNARGETALSLAR 618
+N +G+TA LAR
Sbjct: 130 VGHRNHKGDTACDLAR 145
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+GRT L + G LL GA+ P +T F IH AAR G+ +Q+L++
Sbjct: 37 FGRTALQ-VMKLGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEF 92
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAK-AGADFGLVSVSGQSASSIA 413
D+N + G L ++AK V+ L K ++ G + G +A +A
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
N D +D GF+ + AA G ++ + L+ ADV + + G + L+ + + E
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++ A G+RN G A A G + V L+ + G G
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 87 AAHSGNVTLVKKLLSTGADVNQKLFRG-FATTIAVREGHLEILEILLKAGASQ 138
AA +G + ++ LL ADVN + G +A +EGHL ++E L+K AS
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 484 AASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAG 543
AA++G +E L+ +V N G+TA+ + +L N ++ +++L A ++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGA-NPDLKDRT 69
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
GF +H AAR G LD ++ L VN+ D +G PL LAA+EGH + E L+ + A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 603 CDIKNARGETALSLAR 618
+N +G+TA LAR
Sbjct: 130 VGHRNHKGDTACDLAR 145
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+GRT L + G LL GA+ P +T F IH AAR G+ +Q+L++
Sbjct: 37 FGRTALQ-VMKLGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEF 92
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAK-AGADFGLVSVSGQSASSIA 413
D+N + G L ++AK V+ L K ++ G + G +A +A
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
N D +D GF+ + AA G ++ + L+ ADV + + G + L+ + + E
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++ A G+RN G A A G + V L+ + G G
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 87 AAHSGNVTLVKKLLSTGADVNQKLFRG-FATTIAVREGHLEILEILLKAGASQ 138
AA +G + ++ LL ADVN + G +A +EGHL ++E L+K AS
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 431 RSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLD-YQDDNGFSAVMVAASKGH 489
+ G IP +V+ QA +I + L E +NLD Y DD+G++ +A S G+
Sbjct: 34 QDGRIPLHWSVSF--------QAHEITSF-LLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGN----RNAGGF 545
+EV + L Y LNK + L FE + +F +E G ++
Sbjct: 85 LEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE--VSQFLIENGASVRIKDKFNQ 141
Query: 546 YALHCAARRGDLDAVRLLTSRGY-GVNVPDGDGYTPLMLAAREGHGPMCELLISN-GAVC 603
LH AA G L + LL G VN D G+TPL A EGHG LL+ GA
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Query: 604 DIKNARGETALSLA 617
D+ + +G A +A
Sbjct: 202 DLVDNKGAKAEDVA 215
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 40/213 (18%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GR LH ++ + LLS + + + P H+A +G +V+SL D
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 364 C--DLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVG 421
DLN T G T L ++ K E + L + GA SV
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA---------------------SVR 134
Query: 422 FQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAV 481
+ I PL A G + ++ L G + +++QD G++ +
Sbjct: 135 IKDKFNQI----------------PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 482 MVAASKGHVEVFRELVYA-GADVKLLNKSGKTA 513
A ++GH + LV GA+ L++ G A
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGY--GVNVPDGDGYTPLMLAAREGHGPMCELLISNGA 601
G+ H A G+L+ V+ L R +N G T L LA + + + LI NGA
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 602 VCDIKNARGETALSLARKNSSMK 624
IK+ + L A S+K
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLK 154
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 431 RSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLD-YQDDNGFSAVMVAASKGH 489
+ G IP +V+ QA +I + L E +NLD Y DD+G++ +A S G+
Sbjct: 34 QDGRIPLHWSVSF--------QAHEITSF-LLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGN----RNAGGF 545
+EV + L Y LNK + L FE + +F +E G ++
Sbjct: 85 LEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE--VSQFLIENGASVRIKDKFNQ 141
Query: 546 YALHCAARRGDLDAVRLLTSRGY-GVNVPDGDGYTPLMLAAREGHGPMCELLISN-GAVC 603
LH AA G L + LL G VN D G+TPL A EGHG LL+ GA
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Query: 604 DIKNARGETALSLA 617
D+ + +G A +A
Sbjct: 202 DLVDNKGAKAEDVA 215
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 40/213 (18%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GR LH ++ + LLS + + + P H+A +G +V+SL D
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 364 C--DLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVG 421
DLN T G T L ++ K E + L + GA SV
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA---------------------SVR 134
Query: 422 FQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAV 481
+ I PL A G + ++ L G + +++QD G++ +
Sbjct: 135 IKDKFNQI----------------PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 482 MVAASKGHVEVFRELVYA-GADVKLLNKSGKTA 513
A ++GH + LV GA+ L++ G A
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGY--GVNVPDGDGYTPLMLAAREGHGPMCELLISNGA 601
G+ H A G+L+ V+ L R +N G T L LA + + + LI NGA
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 602 VCDIKNARGETALSLARKNSSMK 624
IK+ + L A S+K
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLK 154
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 271 PYAITWCAVEYFEITGSILRMLLQHLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADA 330
P+ I C+V E+ S+ L+ + G T LH A+ L+ GA
Sbjct: 75 PFHIA-CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 331 QCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG-CDLNTKTESGETALMIS-AKYKQEEC 388
+ + + P+H AA +G +++ L G +N + + G T L + A+ +
Sbjct: 134 RIKDKFNQI---PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 389 VKVLAKAGADFGLVSVSGQSASSIA 413
V ++ K GA++ LV G A +A
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 474 DDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533
DD ++ A G E RELV AG DV+ +K T + + +N DL + + +
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 534 ALEK---GNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHG 590
A+ G+ N+ LH A R+G L V L G ++ DG+G + + LAA+ GH
Sbjct: 66 AIVDQLGGDLNST---PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122
Query: 591 PMCELLISNGAVCDIKNARGETALSLA 617
+ LI+ G D+ + G T L A
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
P+H A R G+ ++V L+ G D + G + + ++A++ V L G D ++
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 403 SVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462
+G + A SV R +L S N+ + + L + AG+ + L
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN--TALHWAVLAGNTTVISLL 196
Query: 463 IGREELNLDYQDDNGFSAVMVAASKGHVEVFREL 496
+ N+D Q+ G SA+ +A + +V + L
Sbjct: 197 L-EAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI--AVREGHLEILEILLKAG 135
K +VT L AA + + LVK +S GA V+Q +T + A R+GHL ++ L+K G
Sbjct: 40 KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99
Query: 136 AS 137
A
Sbjct: 100 AD 101
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 431 RSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLD-YQDDNGFSAVMVAASKGH 489
+ G IP +V+ QA +I + L E +NLD Y DD+G++ +A S G+
Sbjct: 34 QDGRIPLHWSVSF--------QAHEITSF-LLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGN----RNAGGF 545
+EV + L Y LNK + L FE + +F +E G ++
Sbjct: 85 LEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE--VSQFLIENGASVRIKDKFNQ 141
Query: 546 YALHCAARRGDLDAVRLLTSRGY-GVNVPDGDGYTPLMLAAREGHGPMCELLISN-GAVC 603
LH AA G L + LL G VN D G+TPL A EGHG LL+ GA
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Query: 604 DIKNARGETALSLA 617
D+ + +G A +A
Sbjct: 202 DLVDNKGAKAEDVA 215
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 40/213 (18%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GR LH ++ + LLS + + + P H+A +G +V+SL D
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 364 C--DLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVG 421
DLN T G T L ++ K E + L + GA SV
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA---------------------SVR 134
Query: 422 FQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAV 481
+ I PL A G + ++ L G + +++QD G++ +
Sbjct: 135 IKDKFNQI----------------PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 482 MVAASKGHVEVFRELVYA-GADVKLLNKSGKTA 513
A ++GH + LV GA+ L++ G A
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 271 PYAITWCAVEYFEITGSILRMLLQHLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADA 330
P+ I C+V E+ S+ L+ + G T LH A+ L+ GA
Sbjct: 75 PFHIA-CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 331 QCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG-CDLNTKTESGETALMIS-AKYKQEEC 388
+ + + P+H AA +G +++ L G +N + + G T L + A+ +
Sbjct: 134 RIKDKFNQI---PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 389 VKVLAKAGADFGLVSVSGQSASSIA 413
V ++ K GA++ LV G A +A
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 300 SPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSL 359
+ ++G T LH A + G V VLL GAD T +T P+HLAA + IV+ L
Sbjct: 43 NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT---PLHLAAWADHLEIVEVL 99
Query: 360 IDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
+ G D+N + + G+TA IS E+ ++L K
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L + GAD T P+HLAA LG+ IV+ L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVRILTANGADVNANDYWGHT---PLHLAAMLGHLEIVEVLLKNG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N +G T L ++A E V+VL K GAD G++A I+ N
Sbjct: 71 ADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 39/67 (58%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+LT+ G VN D G+TPL LAA GH + E+L+ NGA + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 611 ETALSLA 617
T L LA
Sbjct: 81 RTPLHLA 87
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA G L+ V +L G VN G TPL LAA H + E+L+ +GA
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 63 REGKPSEVRVEFEEFKSDVTA--------LFLAAHSGNVTLVKKLLSTGADVNQKLFRGF 114
R G+ EVR+ +DV A L LAA G++ +V+ LL GADVN G
Sbjct: 23 RAGQDDEVRI-LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR 81
Query: 115 ATT-IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
+A HLEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+PL A G + ++ L+ + +++ + G + + +AA H+E+ L+ GADV
Sbjct: 49 TPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 505 LLNKSGKTAIMLSELNQNCDLFE 527
+K GKTA +S N N DL E
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAE 130
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 477 GFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALE 536
G + + +AA GH+E+ L+ GADV +G+T + L+ + ++ E V+L+ +
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVE-VLLKHGAD 105
Query: 537 KGNRNAGGFYALHCAARRGDLDAVRLL 563
++ G A + G+ D +L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 12/182 (6%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A D +K ++ +D D G + + +A +E+ + L+ GAD+ L
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 507 NKSGKTAIMLSELNQNCDLFEKVMLEFA---LEKGNRNAGGFYALHCAARRGDLDAVRLL 563
N + + + ++ ML+ A L K NR G AL AA +G +D V+LL
Sbjct: 69 NSISDSPYLYAGAQGRTEIL-AYMLKHATPDLNKHNRYGGN--ALIPAAEKGHIDNVKLL 125
Query: 564 TSRGY-GVNVPDGDGYTPLMLAA--REG---HGPMCELLISNGAVCDIKNARGETALSLA 617
G ++ + GYT L+ A REG + + +LL+ NGA IK+ G TA+ A
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Query: 618 RK 619
+
Sbjct: 186 NQ 187
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Query: 376 ALMISAKYKQEECVK-VLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGN 434
AL+ +A + + VK +L V G + +IA N + +A++D R +
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN-DIEIAKALID--RGAD 64
Query: 435 IPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFR 494
I ++++ SP ++ G L ++ +L+ + G +A++ AA KGH++ +
Sbjct: 65 INLQNSISD-SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123
Query: 495 ELVYAG-ADVKLLNKSGKTAIM----LSELNQNCDLFEKVMLEFALEKGNRNAGGFYALH 549
L+ G D+ N G TA++ L E NQ K+++E ++ ++ G A+
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183
Query: 550 CAARRGDLDAVRLL 563
A ++G + ++L
Sbjct: 184 YANQKGYTEISKIL 197
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 359 LIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWW 418
L D+ ++ G T L I+ E K L GAD L +SI+ S +
Sbjct: 25 LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-------QNSISDSPYL 77
Query: 419 SVGFQ--RAVLDIIRSGNIP--KSSNVAVFSPLMFVAQAGDIAALKALI--GREELNLDY 472
G Q +L + P N + L+ A+ G I +K L+ GRE+ +D+
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED--IDF 135
Query: 473 QDDNGFSAVMVA-----ASKGHVEVFRELVYAGADVKLLNKSGKTAI 514
Q+D G++A++ A ++ + ++ + L+ GAD + + SG+TA+
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGFATTIAVREGHLEILEILLK 133
T L +A H+ ++ + K L+ GAD+N Q A +G EIL +LK
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 352 YSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
Y IV+ L+++G D + K SG TA+ + + E K+LA+
Sbjct: 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD K P+HLAA + IV+ L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAE---DKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N GET L + A Y E V+VL K GAD G++A I+ N
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G VN D G TPL LAA H + E+L+ NGA + +A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 611 ETALSL 616
ET L L
Sbjct: 81 ETPLHL 86
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A + V VLL GAD +T P+HL A G+ IV+ L+ G
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET---PLHLVAMYGHLEIVEVLLKHG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA L+ V +L G VN D G TPL L A GH + E+L+ +GA
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN + G +A HLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
A+ E H G +++V+ L+K G D+NA D+
Sbjct: 78 -AIGETPLH-------------------------LVAMYGHLEIVEVLLKHGADVNAQDK 111
Query: 203 L 203
Sbjct: 112 F 112
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 63 REGKPSEVRVEFE-------EFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ E K +T L LAA + ++ +V+ LL GADVN
Sbjct: 23 RAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA--IDAIG 80
Query: 116 TT---IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
T + GHLEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 477 GFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
G + + + A GH+E+ L+ GADV +K GKTA +S N N DL E
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 34/128 (26%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ +D G + + +AA H+E+ L+ GADV ++ G+T
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET---------------- 82
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
LH A G L+ V +L G VN D G T ++ G
Sbjct: 83 ------------------PLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 589 HGPMCELL 596
+ + E+L
Sbjct: 125 NEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD + P+HLAA+LG+ IV+ L+ G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNA---LDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N + G T L ++A E V+VL K GAD G++A I+ N
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA+ G L+ V +L G VN D G TPL LAA GH + E+L+ +GA
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G VN D DG TPL LAA+ GH + E+L+ GA + ++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 611 ETALSLA 617
T L LA
Sbjct: 81 ITPLHLA 87
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD T P+HLAA G+ IV+ L+ G
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGIT---PLHLAAIRGHLEIVEVLLKHG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN G +A + GHLEI+E+LLK GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA-- 75
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
+ + L A RG +++V+ L+K G D+NA D+
Sbjct: 76 ------------------------EDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
Query: 203 L 203
Sbjct: 112 F 112
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 16/112 (14%)
Query: 63 REGKPSEVRV------EFEEFKSD-VTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + D +T L LAA G++ +V+ LL GADVN + F
Sbjct: 23 RAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE--DNFG 80
Query: 116 TT---IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
T +A GHLEI+E+LLK GA A ++ A + +G LAE+L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 444 FSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADV 503
+PL AQ G + ++ L+ + +++ +D+ G + + +AA +GH+E+ L+ GADV
Sbjct: 48 LTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 504 KLLNKSGKTAIMLSELNQNCDLFE 527
+K GKTA +S N N DL E
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAE 130
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 34/123 (27%)
Query: 474 DDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533
D++G + + +AA GH+E+ L+ GADV + G T
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGIT--------------------- 82
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
LH AA RG L+ V +L G VN D G T ++ G+ +
Sbjct: 83 -------------PLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 594 ELL 596
E+L
Sbjct: 130 EIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA+RG L+ V +L G VN D G TPL LAA GH + E+L+ GA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD +T P+HLAA +G+ IV+ L++ G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT---PLHLAATVGHLEIVEVLLEYG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T P+HLAA+ G+ IV+ L+ G
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVT---PLHLAAKRGHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++A E V+VL + GAD G++A I+ N
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 63 REGKPSEVRVEFEE-------FKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + VT L LAA G++ +V+ LL GADVN G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
Query: 116 TT-IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
+A GHLEI+E+LL+ GA A ++ A + +G LAE+L
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L A +G V+ L++ GADVN G +A + GHLEI+E+LLK GA A +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
G+ L H+ A G +++V+ L++ G D+NA D+
Sbjct: 78 -------SWGRTPL------------HL-------AATVGHLEIVEVLLEYGADVNAQDK 111
Query: 203 L 203
Sbjct: 112 F 112
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 442 AVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGA 501
A +PL A+ G + ++ L+ + +++ D G + + +AA+ GH+E+ L+ GA
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 502 DVKLLNKSGKTAIMLSELNQNCDLFE 527
DV +K GKTA +S N N DL E
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ DD G + + +AA +GH+E+ L+ GADV + G+T + L+ + ++ E
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVE- 97
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLL 563
V+LE+ + ++ G A + G+ D +L
Sbjct: 98 VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 499 AGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLD 558
+G V + ++ G + + ++ L+ DL ++L+ G RNA LH A ++G
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLI-PLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 559 AVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
V+ L N D G TPL+ A GH + LL+ +GA + N +G TAL A
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 362 SGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVG 421
SG +N ++ G + L ++A + + + + +L K GA+ G + +A G
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ----G 130
Query: 422 FQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAV 481
+ V ++ S P +++ +PL++ G L AL+ + +++ ++ G +A+
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH-HELVALLLQHGASINASNNKGNTAL 189
Query: 482 MVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELN 520
A + HV V L+ GA V++LNK +TA+ +E N
Sbjct: 190 HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN 228
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 3/156 (1%)
Query: 468 LNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
+N+ QD G S + VAA G ++ L+ GA+ N + L+ Q
Sbjct: 79 VNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA-CQQGHFQVV 135
Query: 528 KVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAARE 587
K +L+ + ++ G L A G + V LL G +N + G T L A E
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE 195
Query: 588 GHGPMCELLISNGAVCDIKNARGETALSLARKNSSM 623
H + ELL+ +GA + N R TA+ A +NS +
Sbjct: 196 KHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G + LH A L G + +LL GA+A Q P+HLA + G+ +V+ L+DS
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV---PLHLACQQGHFQVVKCLLDSN 142
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSA 409
N K SG T L+ + E V +L + GA + G +A
Sbjct: 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRG-FATTIAVREGHLEILEILLKAGAS 137
T L A G+ LV LL GA +N +G A AV E H+ ++E+LL GAS
Sbjct: 154 TPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 484 AASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAG 543
AA++G +E L+ +V N G+TA+ + +L N ++ +++L A ++
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGA-NPDLKDRT 69
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
G +H AAR G LD ++ L VN+ D +G PL LAA+EGH + E L+ + A
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 603 CDIKNARGETALSLAR 618
+N +G+TA LAR
Sbjct: 130 VGHRNHKGDTACDLAR 145
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+GRT L + G LL GA+ RT IH AAR G+ +Q+L++
Sbjct: 37 FGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGNA---VIHDAARAGFLDTLQTLLEF 92
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAK-AGADFGLVSVSGQSASSIA 413
D+N + G L ++AK V+ L K ++ G + G +A +A
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
N D +D G + + AA G ++ + L+ ADV + + G + L+ + + E
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++ A G+RN G A A G + V L+ + G G
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 87 AAHSGNVTLVKKLLSTGADVNQKLFRG-FATTIAVREGHLEILEILLKAGASQ 138
AA +G + ++ LL ADVN + G +A +EGHL ++E L+K AS
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 298 YNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQ 357
+ + G + LH A G VLL G + +T P+H+AA G++ IV+
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRT---PLHMAASEGHANIVE 84
Query: 358 SLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
L+ G D+N K TAL + ++ +E V++L K GAD S ++A I+ N
Sbjct: 85 VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GA P T P+HLAA+ G+ + + L+ +G
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGA----PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
+ +T+ T L ++A V+VL K GAD
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA+ G +L G + TPL +AA EGH + E+L+ +GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 604 DIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTK 651
+ K+ TAL A +++ EV +L+ G V +K
Sbjct: 94 NAKDMLKMTALHWATEHNHQ----------EVVELLIKYGADVHTQSK 131
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 26/125 (20%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVREGHLEILEILLKAGASQPACEE 143
L AA +G V+ L++ GA +A + GH E+LL+AG S+ A
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--- 62
Query: 144 ALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDRL 203
R V L A G ++V+ L+K G D+NA D L
Sbjct: 63 -----------------------RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 204 LLQSL 208
+ +L
Sbjct: 100 KMTAL 104
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 63 REGKPSEVRVEFEE---FKSD---VTALFLAAHSGNVTLVKKLLSTGA--DVNQKLFRGF 114
R G+ EVR+ F +D + L LAA G+ + + LL G D K+ R
Sbjct: 11 RAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRT- 69
Query: 115 ATTIAVREGHLEILEILLKAGASQPACE----EALLEASCHGQARLAELLM--GSDLIRP 168
+A EGH I+E+LLK GA A + AL A+ H + ELL+ G+D
Sbjct: 70 PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---- 125
Query: 169 HVAVHSLVTACCRGFVDVVD 188
VH+ C F +D
Sbjct: 126 ---VHTQSKFCKTAFDISID 142
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 377 LMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIP 436
L+ +A+ Q++ V++L GA F G S +A G ++R+G
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQ----YGHFSTTEVLLRAGVSR 60
Query: 437 KSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFREL 496
+ +PL A G ++ L+ + +++ +D +A+ A H EV L
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 497 VYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
+ GADV +K KTA +S N N DL E
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA+RG L+ V +L G VN D G TPL LAA GH + E+L+ GA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD +T P+HLAA +G+ IV+ L++ G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRT---PLHLAATVGHLEIVEVLLEYG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T P+HLAA+ G+ IV+ L+ G
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVT---PLHLAAKRGHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++A E V+VL + GAD G++A I+ N
Sbjct: 71 ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 63 REGKPSEVRVEFEE-------FKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + VT L LAA G++ +V+ LL GADVN G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRT 82
Query: 116 TT-IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
+A GHLEI+E+LL+ GA A ++ A + +G LAE+L
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L A +G V+ L++ GADVN G +A + GHLEI+E+LLK GA A +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
I +H A G +++V+ L++ G D+NA D+
Sbjct: 78 -----------------------IWGRTPLH---LAATVGHLEIVEVLLEYGADVNAQDK 111
Query: 203 L 203
Sbjct: 112 F 112
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 442 AVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGA 501
A +PL A+ G + ++ L+ + +++ D G + + +AA+ GH+E+ L+ GA
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 502 DVKLLNKSGKTAIMLSELNQNCDLFE 527
DV +K GKTA +S N N DL E
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ DD G + + +AA +GH+E+ L+ GADV + G+T + L+ + ++ E
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVE- 97
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLL 563
V+LE+ + ++ G A + G+ D +L
Sbjct: 98 VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 117/306 (38%), Gaps = 42/306 (13%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
P+HLAA IVQ L+ G D++ K + G L + Y E ++L K GA +
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 403 SVSGQSASSIAGSNWWSVGFQRAVLD--------IIRSGNIPKSSNVAVFSPLMFVAQAG 454
+ W A ++ G P N S A
Sbjct: 121 DL------------WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS-------AV 161
Query: 455 DIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAI 514
D+A L RE L +++ G S + A +V + L + K +S +TA+
Sbjct: 162 DMAPTPEL--RERLTYEFK---GHSLLQAAREADLAKVKKTLALEIINFKQ-PQSHETAL 215
Query: 515 --MLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNV 572
++ L+ +++L +N LH AA R D + +L G +N
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275
Query: 573 PDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVIL 632
D G T L AA GH C LL+S G+ I + +G TA + M N+A IL
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA-------AQMGNEAVQQIL 328
Query: 633 DEVARM 638
E M
Sbjct: 329 SESTPM 334
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 24/263 (9%)
Query: 320 VAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMI 379
V +LL GAD K P+H A G+ + + L+ G +N T L
Sbjct: 74 VQLLLQHGADVHA---KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130
Query: 380 SAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSS 439
+A + E +L GAD LV+ G+SA +A + R L G+
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL-----RERLTYEFKGH----- 180
Query: 440 NVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHV---EVFREL 496
L+ A+ D+A +K + E +N Q + +A+ A + H +V L
Sbjct: 181 ------SLLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELL 233
Query: 497 VYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGD 556
+ GA+V NK T + ++ + D+ E V+ + + ++ G ALH AA G
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRAALAGH 292
Query: 557 LDAVRLLTSRGYGVNVPDGDGYT 579
L RLL S G ++ G+T
Sbjct: 293 LQTCRLLLSYGSDPSIISLQGFT 315
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 34/171 (19%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A++G+ L AL+ +N D + + +AA V + + L+ GADV
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 507 NKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR 566
+K GG LH A G + LL
Sbjct: 88 DK----------------------------------GGLVPLHNACSYGHYEVTELLLKH 113
Query: 567 GYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
G VN D +TPL AA + +C LL+S+GA + N G++A+ +A
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 148/395 (37%), Gaps = 62/395 (15%)
Query: 67 PSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT---IAVREG 123
PS V E+K D L AA SGN + LL T +VN G +T +A
Sbjct: 13 PSAKAVLTGEYKKD--ELLEAARSGNEEKLMALL-TPLNVNCHASDGRKSTPLHLAAGYN 69
Query: 124 HLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGF 183
+ I+++LL+ GA A ++ L V +H+ AC G
Sbjct: 70 RVRIVQLLLQHGADVHAKDKGGL-----------------------VPLHN---ACSYGH 103
Query: 184 VDVVDTLMKCGVDINATDRLLLQSLKPSLHTNVDCXXXXXXXXXXXXXXXXXXXXXGANT 243
+V + L+K G +NA D L + N GA+
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKN-------------RVEVCSLLLSHGADP 150
Query: 244 DMKVRLGAWSWDTTTGEEFRVGAGLAEPYAITWCAVEYFEITGSILRMLLQHLSYNSPHY 303
+ G + D E R A ++ + L+ +++ P
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 304 GRTLLHHAI--LCGCTGAVA-VLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLI 360
T LH A+ L VA +LL GA+ K P+H+AA ++ +++ L
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVN---EKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 361 DSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSV 420
G +N G+TAL +A + ++L G+D ++S+ G +A+ +
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN------ 321
Query: 421 GFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGD 455
AV I+ ++S+V L+ ++AGD
Sbjct: 322 ---EAVQQILSESTPMRTSDVDYR--LLEASKAGD 351
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G LH AA+RG L+ V +L G VN D G TPL LAA GH + E+L+ GA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T P+HLAA+ G+ IV+ L+ G
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVT---PLHLAAKRGHLEIVEVLLKHG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N + G T L ++A E V+VL + GAD G++A I+ N
Sbjct: 71 ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A G V VLL GAD +T P+HLAA +G+ IV+ L++ G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRT---PLHLAATVGHLEIVEVLLEYG 103
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D+N + + G+TA IS E+ ++L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 63 REGKPSEVRVEFEE-------FKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFA 115
R G+ EVR+ + VT L LAA G++ +V+ LL GADVN + G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRT 82
Query: 116 TT-IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
+A GHLEI+E+LL+ GA A ++ A + +G LAE+L
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L A +G V+ L++ GADVN G +A + GHLEI+E+LLK GA A +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
I +H A G +++V+ L++ G D+NA D+
Sbjct: 78 -----------------------IWGRTPLH---LAATVGHLEIVEVLLEYGADVNAQDK 111
Query: 203 L 203
Sbjct: 112 F 112
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 442 AVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGA 501
A +PL A+ G + ++ L+ + +++ +D G + + +AA+ GH+E+ L+ GA
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 502 DVKLLNKSGKTAIMLSELNQNCDLFE 527
DV +K GKTA +S N N DL E
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ DD G + + +AA +GH+E+ L+ GADV + G+T + L+ + ++ E
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVE- 97
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLL 563
V+LE+ + ++ G A + G+ D +L
Sbjct: 98 VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 450 VAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKS 509
+A G++ L I +E + +++ D+ GF+ +M AA+ G + V L+ GAD +LL K
Sbjct: 26 LAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 84
Query: 510 GKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++A+ L A +G D V++L G
Sbjct: 85 RESALSL----------------------------------ACSKGYTDIVKMLLDCGVD 110
Query: 570 VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
VN D +G TPL+ A H ++L+ +GA I+ G ++ LA
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T L A G V LL GAD Q + +++ + LA GY+ IV+ L+D G
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES---ALSLACSKGYTDIVKMLLDCG 108
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQ 423
D+N +G T L+ + +CVK+L ++GAD + + SG ++ +A ++G+
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA----VALGY- 163
Query: 424 RAVLDIIRS 432
R+V +I S
Sbjct: 164 RSVQQVIES 172
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 145 LLEASCHGQARLAELLM--GSDLIRPHVA----VHSLVTACCRGFVDVVDTLMKCGVDIN 198
L+ A+ HGQ + E L+ G+D P + +L AC +G+ D+V L+ CGVD+N
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 112
Query: 199 ATD 201
D
Sbjct: 113 EYD 115
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI-AVREGHLEILEILLKAGASQPA 140
+AL LA G +VK LL G DVN+ + G + AV H++ +++LL++GA P
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PT 145
Query: 141 CE 142
E
Sbjct: 146 IE 147
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVS 403
+H A G + + I+ +N E G T LM +A + Q V+ L + GAD L+
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 404 VSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
+SA S+A S G+ V ++ G + +PL++ + +K L+
Sbjct: 83 KGRESALSLACSK----GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 138
Query: 464 GREELNLDYQDDNGFSAVMVAASKGHVEV 492
+ + D+G++++ +A + G+ V
Sbjct: 139 -ESGADPTIETDSGYNSMDLAVALGYRSV 166
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 450 VAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKS 509
+A G++ L I +E + +++ D+ GF+ +M AA+ G + V L+ GAD +LL K
Sbjct: 8 LAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 66
Query: 510 GKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++A+ L A +G D V++L G
Sbjct: 67 RESALSL----------------------------------ACSKGYTDIVKMLLDCGVD 92
Query: 570 VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
VN D +G TPL+ A H ++L+ +GA I+ G ++ LA
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T L A G V LL GAD Q + +++ + LA GY+ IV+ L+D G
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES---ALSLACSKGYTDIVKMLLDCG 90
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQ 423
D+N +G T L+ + +CVK+L ++GAD + + SG ++ +A ++G+
Sbjct: 91 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA----VALGY- 145
Query: 424 RAVLDIIRS 432
R+V +I S
Sbjct: 146 RSVQQVIES 154
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 145 LLEASCHGQARLAELLM--GSDLIRPHVA----VHSLVTACCRGFVDVVDTLMKCGVDIN 198
L+ A+ HGQ + E L+ G+D P + +L AC +G+ D+V L+ CGVD+N
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 94
Query: 199 ATD 201
D
Sbjct: 95 EYD 97
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 547 ALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIK 606
++H A +G++ + + +N D +G+TPLM AA G + E L+ NGA +
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 607 NARGETALSLA 617
E+ALSLA
Sbjct: 64 GKGRESALSLA 74
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI-AVREGHLEILEILLKAGASQPA 140
+AL LA G +VK LL G DVN+ + G + AV H++ +++LL++GA P
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PT 127
Query: 141 CE 142
E
Sbjct: 128 IE 129
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVS 403
+H A G + + I+ +N E G T LM +A + Q V+ L + GAD L+
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 404 VSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
+SA S+A S G+ V ++ G + +PL++ + +K L+
Sbjct: 65 KGRESALSLACSK----GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 120
Query: 464 GREELNLDYQDDNGFSAVMVAASKGHVEV 492
+ + D+G++++ +A + G+ V
Sbjct: 121 -ESGADPTIETDSGYNSMDLAVALGYRSV 148
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 335 RTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
T + F P+ AA G +V+ L+ +G D + E+AL ++ + VK+L
Sbjct: 29 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 88
Query: 395 AGAD 398
G D
Sbjct: 89 CGVD 92
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 450 VAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKS 509
+A G++ L I +E + +++ D+ GF+ +M AA+ G + V L+ GAD +LL K
Sbjct: 10 LAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 68
Query: 510 GKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++A+ L A +G D V++L G
Sbjct: 69 RESALSL----------------------------------ACSKGYTDIVKMLLDCGVD 94
Query: 570 VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
VN D +G TPL+ A H ++L+ +GA I+ G ++ LA
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T L A G V LL GAD Q + +++ + LA GY+ IV+ L+D G
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES---ALSLACSKGYTDIVKMLLDCG 92
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQ 423
D+N +G T L+ + +CVK+L ++GAD + + SG ++ +A ++G+
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA----VALGY- 147
Query: 424 RAVLDIIRS 432
R+V +I S
Sbjct: 148 RSVQQVIES 156
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 145 LLEASCHGQARLAELLM--GSDLIRPHVA----VHSLVTACCRGFVDVVDTLMKCGVDIN 198
L+ A+ HGQ + E L+ G+D P + +L AC +G+ D+V L+ CGVD+N
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96
Query: 199 ATD 201
D
Sbjct: 97 EYD 99
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 547 ALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIK 606
++H A +G++ + + +N D +G+TPLM AA G + E L+ NGA +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 607 NARGETALSLA 617
E+ALSLA
Sbjct: 66 GKGRESALSLA 76
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI-AVREGHLEILEILLKAGASQPA 140
+AL LA G +VK LL G DVN+ + G + AV H++ +++LL++GA P
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PT 129
Query: 141 CE 142
E
Sbjct: 130 IE 131
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVS 403
+H A G + + I+ +N E G T LM +A + Q V+ L + GAD L+
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 404 VSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
+SA S+A S G+ V ++ G + +PL++ + +K L+
Sbjct: 67 KGRESALSLACSK----GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 464 GREELNLDYQDDNGFSAVMVAASKGHVEV 492
+ + D+G++++ +A + G+ V
Sbjct: 123 -ESGADPTIETDSGYNSMDLAVALGYRSV 150
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 335 RTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
T + F P+ AA G +V+ L+ +G D + E+AL ++ + VK+L
Sbjct: 31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90
Query: 395 AGAD 398
G D
Sbjct: 91 CGVD 94
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 71/189 (37%), Gaps = 34/189 (17%)
Query: 438 SSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELV 497
S N L+ A+AGD+ +K L + +N + + + AA V V L+
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 498 YAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDL 557
GADV +K GG LH A G
Sbjct: 65 QHGADVHAKDK----------------------------------GGLVPLHNACSYGHY 90
Query: 558 DAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
+ LL G VNV D +TPL AA +G +C+LL+ +GA KN G T L L
Sbjct: 91 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 150
Query: 618 RKNSSMKND 626
+ + D
Sbjct: 151 KDGDTDIQD 159
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 16 AEVSQRLLEATLAGDLKSATECIADPYVDVNFVGAVSLKTRKTEVVLREGKPSEVRVEFE 75
+E ++LLEA AGD+++ + V V ++ R++
Sbjct: 8 SEADRQLLEAAKAGDVETVKKLCT-----VQSVNCRDIEGRQS----------------- 45
Query: 76 EFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI-AVREGHLEILEILLKA 134
T L AA V++V+ LL GADV+ K G A GH E+ E+L+K
Sbjct: 46 ------TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 135 GASQPACE----EALLEASCHGQARLAELLM--GSDLIRPHVAVHSLVTACCRGFVDVVD 188
GA + L EA+ G+ + +LL+ G+D + + ++ + G D+ D
Sbjct: 100 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQD 159
Query: 189 TL 190
L
Sbjct: 160 LL 161
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGA 397
P+H AA ++V+ L+ G D++ K + G L + Y E ++L K GA
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 39/235 (16%)
Query: 306 TLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGC- 364
T L A+L VA L GAD +++++ H AA + V L +
Sbjct: 168 TPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALH--QAAANRDFGXXVYXLNSTKLK 225
Query: 365 -DLNTKTESGETALMISAKYKQEECV---KVLAKAGADFGLVSVSGQSASSIAGSNWWSV 420
D+ +G TAL I A + + V K+L + GA + + + G
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR----- 280
Query: 421 GFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSA 480
+ L + AQ + +K L+G + N D QD++G +
Sbjct: 281 ------------------------TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 481 VMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQN---CDLFEKVMLE 532
+ +AA +G +EV L+ GA V+ ++ + TA L++ N + D+F++ E
Sbjct: 317 IXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 502 DVKLLNKSGKTAIMLSELNQNCD-------LFEK---VMLEFALEKGNRNAGGFYALHCA 551
D++ L+++G TA+ + N+ D L EK V + A K + G ALH A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 552 ARRGDLDAVRLLT-SRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
A+ + V+ L +G + D DG TP+ LAA+EG + LI GA + +A
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 611 ETALSLARKNS 621
TA LA+ N+
Sbjct: 347 HTARQLAQANN 357
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 70 VRVEFEEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI--AVREGHLEI 127
R + E++K TAL AA N +VK L+ K T I A +EG +E+
Sbjct: 270 ARKDSEKYKG-RTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEV 328
Query: 128 LEILLKAGASQPACEEALLEASCHGQARLAE 158
+ L++ GAS A ++A+ H +LA+
Sbjct: 329 VXYLIQQGASVEA-----VDATDHTARQLAQ 354
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T L A+ G LLS G++ + KT P+ + GYS + L++ G
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT---PLMWSIIFGYSEMSYFLLEHG 124
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
++N + GET L++++KY + E VK L + GAD ++G +A + A
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 539 NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLIS 598
+++ G AL A + L L S+G VN D G TPLM + G+ M L+
Sbjct: 63 DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 599 NGAVCDIKNARGETALSLARK 619
+GA + +N GET L +A K
Sbjct: 123 HGANVNDRNLEGETPLIVASK 143
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+T L +I+ G + LL GA+ +T P+ +A++ G S IV+ L++ G
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET---PLIVASKYGRSEIVKKLLELG 157
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAK 394
D++ + +G TA + + ++E +K+ +
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI-AVREGHLEILEILLKAGAS--- 137
TAL A + + + +KLLS G++VN K F G + ++ G+ E+ LL+ GA+
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Query: 138 -QPACEEALLEASCHGQARLAELL--MGSDL 165
E L+ AS +G++ + + L +G+D+
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADI 160
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+PLM G A+ L+ + L+ +D G +A++ A + + +L+ G++V
Sbjct: 37 TPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 505 LLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLT 564
+ SGKT +M S + ++ +LE +RN G L A++ G + V+ L
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEM-SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 565 SRGYGVNVPDGDGYT 579
G ++ D G T
Sbjct: 155 ELGADISARDLTGLT 169
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLV 402
P+ +A LG + L+++ L K G TAL+ + K + + L G++
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 403 SVSGQSASSIAGSNWWSV--GFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALK 460
SG++ WS+ G+ ++ G N+ +PL+ ++ G +K
Sbjct: 98 DFSGKTPL------MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151
Query: 461 ALIGREELNLDY--QDDNGFSAVMVAASKGHVEVFR 494
L+ EL D +D G +A A G EV +
Sbjct: 152 KLL---ELGADISARDLTGLTAEASARIFGRQEVIK 184
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVR-EGHLEILEIL 131
T L +A+ G +VKKLL GAD++ + G + R G E+++I
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G V D +G TPL LAAR GH + +LL+ GA + ++ G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 611 ETALSLARKNSS 622
+TA ++ N +
Sbjct: 73 KTAFDISIDNGN 84
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD + T P+HLAAR G+ +V+ L+++G
Sbjct: 7 GKKLLE-AARAGQDDEVRILMANGADVAAKDKNGST---PLHLAARNGHLEVVKLLLEAG 62
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVL 392
D+N + + G+TA IS E+ ++L
Sbjct: 63 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 473 QDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
+D NG + + +AA GH+EV + L+ AGADV +K GKTA +S N N DL E
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAE 89
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+ K ++G T L ++A+ E VK+L +AGAD G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 407 QSASSIAGSN 416
++A I+ N
Sbjct: 73 KTAFDISIDN 82
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 63 REGKPSEVRVEFE-------EFKSDVTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGF 114
R G+ EVR+ + K+ T L LAA +G++ +VK LL GADVN Q F
Sbjct: 15 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
Query: 115 ATTIAVREGHLEILEIL 131
A I++ G+ ++ EIL
Sbjct: 75 AFDISIDNGNEDLAEIL 91
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADV K G +A R GHLE++++LL+AGA A +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 143 E----ALLEASCHGQARLAELL 160
+ A + +G LAE+L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 540 RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
++ G LH AAR G L+ V+LL G VN D G T ++ G+ + E+L
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 581 LMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLV 640
L+ AAR G +L++NGA K+ G T L LA +N + EV ++L+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL----------EVVKLLL 59
Query: 641 LGGGHVLKHTKGGK 654
G V K GK
Sbjct: 60 EAGADVNAQDKFGK 73
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
YG T L+ A G V VLL GAD F P+HLAA +G+ I + L+
Sbjct: 46 YGLTPLYLATAHGHLEIVEVLLKNGADVNA---VDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAK 394
G D+N + + G+TA IS E+ ++L K
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G VN D G TPL LA GH + E+L+ NGA + +A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 611 ETALSLA 617
T L LA
Sbjct: 81 FTPLHLA 87
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
G L+ A G L+ V +L G VN D G+TPL LAA GH + E+L+ +GA
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 604 DIKNARGETALSLARKNSS 622
+ ++ G+TA ++ N +
Sbjct: 107 NAQDKFGKTAFDISIGNGN 125
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 27/121 (22%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADVN K G +A GHLEI+E+LLK GA A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 143 EALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDR 202
+ L A G +++ + L+K G D+NA D+
Sbjct: 78 A--------------------------IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
Query: 203 L 203
Sbjct: 112 F 112
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 16/112 (14%)
Query: 63 REGKPSEVRVEF---------EEFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRG 113
R G+ EVR+ +E+ +T L+LA G++ +V+ LL GADVN G
Sbjct: 23 RAGQDDEVRILMANGADVNAKDEYG--LTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 114 FATT-IAVREGHLEILEILLKAGASQPACEE----ALLEASCHGQARLAELL 160
F +A GHLEI E+LLK GA A ++ A + +G LAE+L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G+ LL A G V +L++ GAD T P++LA G+ IV+ L+ +G
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAKDEYGLT---PLYLATAHGHLEIVEVLLKNG 70
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSN 416
D+N G T L ++A E +VL K GAD G++A I+ N
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN 123
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 444 FSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADV 503
+PL G + ++ L+ + +++ D GF+ + +AA GH+E+ L+ GADV
Sbjct: 48 LTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 504 KLLNKSGKTAIMLSELNQNCDLFE 527
+K GKTA +S N N DL E
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAE 130
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 34/128 (26%)
Query: 469 NLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
+++ +D+ G + + +A + GH+E+ L+ GADV +
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV---------------------- 76
Query: 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREG 588
+A GF LH AA G L+ +L G VN D G T ++ G
Sbjct: 77 ------------DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Query: 589 HGPMCELL 596
+ + E+L
Sbjct: 125 NEDLAEIL 132
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 69/180 (38%), Gaps = 34/180 (18%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A+AGD+ +K L + +N + + + AA V V L+ GADV
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 507 NKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR 566
+K GG LH A G + LL
Sbjct: 72 DK----------------------------------GGLVPLHNACSYGHYEVAELLVKH 97
Query: 567 GYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKND 626
G VNV D +TPL AA +G +C+LL+ +GA KN G T L L + + D
Sbjct: 98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQD 157
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 16 AEVSQRLLEATLAGDLKSATECIADPYVDVNFVGAVSLKTRKTEVVLREGKPSEVRVEFE 75
+E ++LLEA AGD+++ + V V ++ R++
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCT-----VQSVNCRDIEGRQS----------------- 43
Query: 76 EFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI-AVREGHLEILEILLKA 134
T L AA V++V+ LL GADV+ K G A GH E+ E+L+K
Sbjct: 44 ------TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 135 GASQPACE----EALLEASCHGQARLAELLM--GSDLIRPHVAVHSLVTACCRGFVDVVD 188
GA + L EA+ G+ + +LL+ G+D + + ++ + G D+ D
Sbjct: 98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQD 157
Query: 189 TL 190
L
Sbjct: 158 LL 159
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGA 397
P+H AA ++V+ L+ G D++ K + G L + Y E ++L K GA
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 39/189 (20%)
Query: 447 LMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLL 506
L+ A+AGD+ +K L + +N + + + AA V V L+ GADV
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 507 NKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR 566
+K GG LH A G + LL
Sbjct: 76 DK----------------------------------GGLVPLHNACSYGHYEVAELLVKH 101
Query: 567 GYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSS---- 622
G VNV D +TPL AA +G +C+LL+ +GA KN G T L L + +
Sbjct: 102 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQD 161
Query: 623 -MKNDAELV 630
++ DA L+
Sbjct: 162 LLRGDAALL 170
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 16 AEVSQRLLEATLAGDLKSATECIADPYVDVNFVGAVSLKTRKTEVVLREGKPSEVRVEFE 75
+E ++LLEA AGD+++ + V+ + EG+ S
Sbjct: 10 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI---------------EGRQS------- 47
Query: 76 EFKSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTI-AVREGHLEILEILLKA 134
T L AA V++V+ LL GADV+ K G A GH E+ E+L+K
Sbjct: 48 ------TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 135 GASQPACE----EALLEASCHGQARLAELLM--GSDLIRPHVAVHSLVTACCRGFVDVVD 188
GA + L EA+ G+ + +LL+ G+D + + ++ + G D+ D
Sbjct: 102 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQD 161
Query: 189 TL 190
L
Sbjct: 162 LL 163
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGA 397
P+H AA ++V+ L+ G D++ K + G L + Y E ++L K GA
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 543 GGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV 602
GG LH AA G L+ + L +G +N PD TPL+ A EGH +LL+S GA
Sbjct: 34 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 603 CDIKNARGETALSLARKNSSMK 624
+K G TAL A N ++K
Sbjct: 94 KTVKGPDGLTALE-ATDNQAIK 114
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GR LH+A CG + LL GAD P K P+ A G+ + V+ L+ G
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAP---DKHHITPLLSAVYEGHVSCVKLLLSKG 91
Query: 364 CDLNTKTESGETAL 377
D K G TAL
Sbjct: 92 ADKTVKGPDGLTAL 105
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 335 RTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
RT + P+H AA G I++ L+ G D+N + T L+ + CVK+L
Sbjct: 30 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 89
Query: 395 AGADFGLVSVSGQSA 409
GAD + G +A
Sbjct: 90 KGADKTVKGPDGLTA 104
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 87 AAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACEE-- 143
A +G++ VK ++ G DVN+ L G A G LEILE LL GA A ++
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 144 --ALLEASCHGQARLAELLM 161
LL A G +LL+
Sbjct: 69 ITPLLSAVYEGHVSCVKLLL 88
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 34/168 (20%)
Query: 450 VAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKS 509
+A G++ LK + + + ++ D+ GF+ ++ A++ G +E R L+ GAD +L K
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68
Query: 510 GKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++A+ L+ + GG+ D V LL R
Sbjct: 69 RESALSLA-----------------------STGGY-----------TDIVGLLLERDVD 94
Query: 570 VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
+N+ D +G TPL+ A R H E L++ GA + G T + LA
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 299 NSP-HYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQ 357
N P G T L A G V LL GAD + +++ + LA+ GY+ IV
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES---ALSLASTGGYTDIVG 86
Query: 358 SLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
L++ D+N +G T L+ + + +CV+ L GAD + SG + +A
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 543 GGFYALHCAARRGDLDAVRLLTSRGYG-VNVPDGDGYTPLMLAAREGHGPMCELLISNGA 601
G ++H A +G+LD ++ +G VN PD G+TPL+ A+ G L+ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 602 VCDIKNARGETALSLA 617
I E+ALSLA
Sbjct: 61 DPHILAKERESALSLA 76
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 551 AARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARG 610
AAR G D VR+L + G V D +G TPL LAAR GH + +LL+ GA ++ G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 611 ETALSLARKNSS 622
+TA ++ N +
Sbjct: 91 KTAFDISIDNGN 102
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 297 SYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIV 356
S+ G+ LL A G V +L++ GAD + T P+HLAAR G+ +V
Sbjct: 18 SHMGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGST---PLHLAARNGHLEVV 73
Query: 357 QSLIDSGCDLNTKTESGETALMISAKYKQEECVKVL 392
+ L+++G D+ + + G+TA IS E+ ++L
Sbjct: 74 KLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 433 GNIPKSSNVA--VFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHV 490
G +P+ S++ + L+ A+AG ++ L+ ++ +D NG + + +AA GH+
Sbjct: 12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA-DVAAKDKNGSTPLHLAARNGHL 70
Query: 491 EVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE 527
EV + L+ AGADV +K GKTA +S N N DL E
Sbjct: 71 EVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
AAR G V+ L+ +G D+ K ++G T L ++A+ E VK+L +AGAD G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 407 QSASSIAGSN 416
++A I+ N
Sbjct: 91 KTAFDISIDN 100
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACE 142
L AA +G V+ L++ GADV K G +A R GHLE++++LL+AGA A +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 143 E----ALLEASCHGQARLAELL 160
+ A + +G LAE+L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 63 REGKPSEVRVEFE-------EFKSDVTALFLAAHSGNVTLVKKLLSTGADVN-QKLFRGF 114
R G+ EVR+ + K+ T L LAA +G++ +VK LL GADV Q F
Sbjct: 33 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Query: 115 ATTIAVREGHLEILEIL 131
A I++ G+ ++ EIL
Sbjct: 93 AFDISIDNGNEDLAEIL 109
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 581 LMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLV 640
L+ AAR G +L++NGA K+ G T L LA +N + EV ++L+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL----------EVVKLLL 77
Query: 641 LGGGHVLKHTKGGK 654
G V K GK
Sbjct: 78 EAGADVXAQDKFGK 91
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 540 RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELL 596
++ G LH AAR G L+ V+LL G V D G T ++ G+ + E+L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 543 GGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV 602
GG LH AA G L+ + L +G +N PD TPL+ A EGH +LL+S GA
Sbjct: 39 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 603 CDIKNARGETALSLARKNSSMK 624
+K G TA A N ++K
Sbjct: 99 KTVKGPDGLTAFE-ATDNQAIK 119
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GR LH+A CG + LL GAD P + T P+ A G+ + V+ L+ G
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT---PLLSAVYEGHVSCVKLLLSKG 96
Query: 364 CDLNTKTESGETAL 377
D K G TA
Sbjct: 97 ADKTVKGPDGLTAF 110
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 335 RTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
RT + P+H AA G I++ L+ G D+N + T L+ + CVK+L
Sbjct: 35 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94
Query: 395 AGADFGLVSVSGQSA 409
GAD + G +A
Sbjct: 95 KGADKTVKGPDGLTA 109
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 87 AAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPACEE-- 143
A +G++ VK ++ G DVN+ L G A G LEILE LL GA A ++
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 144 --ALLEASCHGQARLAELLM 161
LL A G +LL+
Sbjct: 74 ITPLLSAVYEGHVSCVKLLL 93
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 452 QAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGK 511
+ G+ A++ + E +L+ DD+GFS + A +G V L+ GA + ++N+
Sbjct: 14 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 73
Query: 512 TAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVN 571
T LH AA G D V+ L +N
Sbjct: 74 T----------------------------------PLHLAASHGHRDIVQKLLQYKADIN 99
Query: 572 VPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLAR 618
+ G PL A G + E L++NGA+ I N GE + A+
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G + LH A G + V +L+ GA R T P+HLAA G+ IVQ L+
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT---PLHLAASHGHRDIVQKLLQY 94
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSV 404
D+N E G L + + Q++ + L GA LVS+
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA---LVSI 133
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 31/128 (24%)
Query: 76 EFKSDVTALFLAAHSGNVTLVKKLL-STGADVNQKLFRGFATT-IAVREGHLEILEILLK 133
EF D+ F GN V+ L +T D+NQ GF+ A REG ++E+L+
Sbjct: 4 EFMDDI---FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 134 AGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKC 193
GA R+ + G D L A G D+V L++
Sbjct: 61 RGA------------------RINVMNRGDDT--------PLHLAASHGHRDIVQKLLQY 94
Query: 194 GVDINATD 201
DINA +
Sbjct: 95 KADINAVN 102
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 452 QAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGK 511
+ G+ A++ + E +L+ DD+GFS + A +G V L+ GA + ++N+
Sbjct: 9 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 512 TAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVN 571
T LH AA G D V+ L +N
Sbjct: 69 T----------------------------------PLHLAASHGHRDIVQKLLQYKADIN 94
Query: 572 VPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLAR 618
+ G PL A G + E L++NGA+ I N GE + A+
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G + LH A G + V +L+ GA R T P+HLAA G+ IVQ L+
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT---PLHLAASHGHRDIVQKLLQY 89
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQ 407
D+N E G L + + Q++ + L GA LVS+ +
Sbjct: 90 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA---LVSICNK 131
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 479 SAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKG 538
+ + AA++G VE R+L+ AGAD LN+ G+ I + + + + E ++L A
Sbjct: 14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAELLLLHGAEPNC 72
Query: 539 NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGH 589
A +H AAR G LD + +L G ++V D G P+ LA +GH
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 87/189 (46%), Gaps = 8/189 (4%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGA----D 398
P+HLA ++V+ L+ +G G+TA ++ +++ C++ L + A D
Sbjct: 49 PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 399 FGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAA 458
+ G +A +A + Q L + R +I + SPL+ + ++
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQ---LLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165
Query: 459 LKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSE 518
++ L+ + N++ Q +G SA+ A+ +G + + R LV +GAD L N T +M++
Sbjct: 166 VQLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224
Query: 519 LNQNCDLFE 527
+ D+
Sbjct: 225 SRRVIDILR 233
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 106/251 (42%), Gaps = 48/251 (19%)
Query: 343 PIHLAARLGYSTIVQSLID----SGCDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
P+H+A G V L++ G +L+ +T L ++ V++L AGA
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 399 FGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAA 458
+ GQ+A+ +A + RA+LD G
Sbjct: 72 PMALDRHGQTAAHLACEHRSPTCL-RALLDSAAPGT------------------------ 106
Query: 459 LKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLN-KSGKTAIMLS 517
L+L+ ++ +G +A+ VA + E + L+ GAD+ ++ KSG++ ++ +
Sbjct: 107 ---------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 518 ELNQNCDLFEKVMLEFALEKG-NRNA---GGFYALHCAARRGDLDAVRLLTSRGYGVNVP 573
N + M++ L+ G N NA G ALH A+ RG L VR L G ++
Sbjct: 158 VENNSLS-----MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 574 DGDGYTPLMLA 584
+ TPLM+A
Sbjct: 213 NCHNDTPLMVA 223
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 445 SPLMFVAQAGDIAALKALI------GREELNLDYQDDNGFSAVMVAASKGHVEVFRELVY 498
+PL G++ A+ L+ GRE LD ++ + + +A V R LV
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 499 AGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFA---LEKGNRNAGGFYALHCAA--- 552
AGA L++ G+TA L+ +++ ++ A L+ RN G ALH A
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 553 ----------RRGDLDAV---------------------RLLTSRGYGVNVPDGDGYTPL 581
R D+DAV +LL G VN G + L
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
Query: 582 MLAAREGHGPMCELLISNGAVCDIKNARGETALSLARK 619
A+ G P+ L+ +GA +KN +T L +AR
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 450 VAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKS 509
+A G++ LK + + + ++ D+ GF+ ++ A++ G +E R L+ GAD +L K
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68
Query: 510 GKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
++A+ L+ + GG+ D V LL R
Sbjct: 69 RESALSLA-----------------------STGGY-----------TDIVGLLLERDVD 94
Query: 570 VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLA 617
+N+ D +G TPL+ A H E L++ GA + G T + LA
Sbjct: 95 INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T L A G V LL GAD + +++ + LA+ GY+ IV L++
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERES---ALSLASTGGYTDIVGLLLERD 92
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
D+N +G T L+ + +CV+ L GAD + SG + +A
Sbjct: 93 VDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 543 GGFYALHCAARRGDLDAVRLLTSRGYG-VNVPDGDGYTPLMLAAREGHGPMCELLISNGA 601
G ++H A +G+LD ++ +G VN PD G+TPL+ A+ G L+ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 602 VCDIKNARGETALSLA 617
I E+ALSLA
Sbjct: 61 DPHILAKERESALSLA 76
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHP---IHLAARLGYSTIVQSLI 360
G T LH A GC +V VL + T ++ +HLA+ GY IV+ L+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 361 DSGCDLNTKTE-SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQS 408
G D+N + +G TAL ++ + + V +L K GAD V+ G S
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 289 LRMLLQHLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGAD--AQCPIRTQKTEFHPIHL 346
L +L+ +YN G T LH A + G G V +L+S GAD AQ P + +HL
Sbjct: 106 LHSILKATNYN----GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA----LHL 157
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESG 373
A L +V L+ G D+N T G
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQG 184
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 470 LDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLS----------EL 519
L++Q++ + + +A E+ L+ AG D +L + G T + L+ L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 520 NQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDG-DGY 578
Q+C L L+ N N G LH A+ G L V LL S G VN + +G
Sbjct: 98 TQSC---TTPHLHSILKATNYN--GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 152
Query: 579 TPLMLAAREGHGPMCELLISNGA 601
T L LA + + LL+ GA
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGA 175
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 74 FEEFKSDV--TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEI 130
F F++++ T L LA + + + LL G D + FRG +A +G L + +
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 131 LLKA----------GASQPACEEALLEASCHGQARLAELL--MGSDL--IRPHVAVHSLV 176
L ++ A+ L AS HG + ELL +G+D+ P +L
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156
Query: 177 TACCRGFVDVVDTLMKCGVDINATDRLLLQSLKP 210
A D+V L+KCG D+N R+ Q P
Sbjct: 157 LAVDLQNPDLVSLLLKCGADVN---RVTYQGYSP 187
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALH 549
+EV R++ A + N +T + L+ + ++ E +L + R+ G LH
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE-ALLGAGCDPELRDFRGNTPLH 83
Query: 550 CAARRGDLDAVRLLTSRGYG------VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
A +G L +V +LT + + +G+T L LA+ G+ + ELL+S GA
Sbjct: 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Query: 604 DIKN-ARGETALSLA 617
+ + G TAL LA
Sbjct: 144 NAQEPCNGRTALHLA 158
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHP---IHLAARLGYSTIVQSLI 360
G T LH A GC +V VL + T ++ +HLA+ GY IV+ L+
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 361 DSGCDLNTKTE-SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQS 408
G D+N + +G TAL ++ + + V +L K GAD V+ G S
Sbjct: 135 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 183
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 289 LRMLLQHLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGAD--AQCPIRTQKTEFHPIHL 346
L +L+ +YN G T LH A + G G V +L+S GAD AQ P + +HL
Sbjct: 103 LHSILKATNYN----GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA----LHL 154
Query: 347 AARLGYSTIVQSLIDSGCDLNTKTESG 373
A L +V L+ G D+N T G
Sbjct: 155 AVDLQNPDLVSLLLKCGADVNRVTYQG 181
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 470 LDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLS----------EL 519
L++Q++ + + +A E+ L+ AG D +L + G T + L+ L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 520 NQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDG-DGY 578
Q+C L L+ N N G LH A+ G L V LL S G VN + +G
Sbjct: 95 TQSC---TTPHLHSILKATNYN--GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 149
Query: 579 TPLMLAAREGHGPMCELLISNGA 601
T L LA + + LL+ GA
Sbjct: 150 TALHLAVDLQNPDLVSLLLKCGA 172
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 74 FEEFKSDV--TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEI 130
F F++++ T L LA + + + LL G D + FRG +A +G L + +
Sbjct: 34 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 93
Query: 131 LLKA----------GASQPACEEALLEASCHGQARLAELL--MGSDL--IRPHVAVHSLV 176
L ++ A+ L AS HG + ELL +G+D+ P +L
Sbjct: 94 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 177 TACCRGFVDVVDTLMKCGVDINATDRLLLQSLKP 210
A D+V L+KCG D+N R+ Q P
Sbjct: 154 LAVDLQNPDLVSLLLKCGADVN---RVTYQGYSP 184
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALH 549
+EV R++ A + N +T + L+ + ++ E +L + R+ G LH
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE-ALLGAGCDPELRDFRGNTPLH 80
Query: 550 CAARRGDLDAVRLLTSRGYG------VNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603
A +G L +V +LT + + +G+T L LA+ G+ + ELL+S GA
Sbjct: 81 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 140
Query: 604 DIKN-ARGETALSLA 617
+ + G TAL LA
Sbjct: 141 NAQEPCNGRTALHLA 155
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
N G LH A+ +GD+ +V L G NV D G+TPL A GH + ELL+ +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 601 AVCDIKNARGETALSLARKN 620
A+ + + ++ L A KN
Sbjct: 67 ALVNTTGYQNDSPLHDAAKN 86
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 302 HYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLID 361
H G TLLH A + G +V LL G+D P + P+H A G+ +V+ L+
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 362 SGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSG 406
+NT ++ L +AK + VK+L GA V++ G
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 531 LEFALEKGN----RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAR 586
+E+ L+ G+ ++ G+ LH A G L V LL VN +PL AA+
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Query: 587 EGHGPMCELLISNGA 601
GH + +LL+S GA
Sbjct: 86 NGHVDIVKLLLSYGA 100
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATT-IAVREGHLEILEILLKAGASQPA 140
T L A + G++ +V+ LL A VN ++ + A + GH++I+++LL GAS+ A
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 327 GADAQCPIRTQKTEFHPIHLAARLGYST---IVQSLIDSGCDLNTKTESGETALMISAKY 383
G DAQ P E +HLA ++ +V +I +G L+ K G TAL +A Y
Sbjct: 164 GPDAQAP------EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 217
Query: 384 KQEECVKVLAKAGADFGLVSVSGQSASSIA 413
Q +C+K+L K A G V+ +G++A IA
Sbjct: 218 NQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 548 LHCA---ARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCD 604
LH A A + L V + G ++ DG T L AA +LL+ A+
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 605 IKNARGETALSLARK 619
N GETAL +ARK
Sbjct: 235 TVNEAGETALDIARK 249
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGA 397
+H AA ++ L+ + T E+GETAL I+ K +EC ++L +A A
Sbjct: 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 508 KSGKTAIML-SELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR 566
K A++L S L DL ++++ E + N G ALH A G + V+ L
Sbjct: 34 KFNPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 567 GYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGA 601
G VN D DG+TPL AA + +C+ L+ +GA
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 476 NGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFAL 535
N + ++ ++ +G ++ + ++Y D L N G TA+ + + ++ K +++F +
Sbjct: 36 NPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV-KFLVQFGV 94
Query: 536 EKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGV 570
++ G+ LHCAA ++ + L G V
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 327 GADAQCPIRTQKTEFHPIHLAARLGYS---TIVQSLIDSGCDLNTKTESGETALMISAKY 383
G DAQ P E +HLA ++ +V +I +G L+ K G TAL +A Y
Sbjct: 183 GPDAQAP------EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 236
Query: 384 KQEECVKVLAKAGADFGLVSVSGQSASSIA 413
Q +C+K+L K A G V+ +G++A IA
Sbjct: 237 NQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGA 397
+H AA ++ L+ + T E+GETAL I+ K +EC ++L +A A
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 552 ARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGE 611
A + L V + G ++ DG T L AA +LL+ A+ N GE
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 612 TALSLARK 619
TAL +ARK
Sbjct: 261 TALDIARK 268
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 514 IMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVP 573
++ S L DL ++++ E + N G ALH A G + V+ L G VN
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 574 DGDGYTPLMLAAREGHGPMCELLISNGA 601
D DG+TPL AA + +C+ L+ +GA
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 487 KGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFY 546
+G ++ + ++Y D L N G TA+ + + ++ K +++F + ++ G+
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV-KFLVQFGVNVNAADSDGWT 105
Query: 547 ALHCAARRGDLDAVRLLTSRGYGV 570
LHCAA ++ + L G V
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAV 129
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 305 RTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGC 364
T L +A + G V +LL GA Q + PIH AAR G+ V SLI G
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 365 DLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
+++ K T L ++ + +Q CVK L ++GAD
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 478 FSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE----KVMLEF 533
+S + AA GH R L+ G V ++ TA +S L++ C K++L+
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNII-----TADHVSPLHEACLGGHLSCVKILLKH 114
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
+ A L A G D V LL G V P+ D +P+ AAR GH
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECV 173
Query: 594 ELLISNGAVCDIKNARGETALSLARKN 620
LI+ G D K + T L LA +N
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACEN 200
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 95/209 (45%), Gaps = 14/209 (6%)
Query: 339 TEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
+++ P+H AA G+ +++LI G +N T + L + CVK+L K GA
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 399 FGLVSVSGQSA---SSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGD 455
V+ + + ++GS W V L + ++ S++A SP+ A+ G
Sbjct: 118 VNGVTADWHTPLFNACVSGS-WDCVN-----LLLQHGASVQPESDLA--SPIHEAARRGH 169
Query: 456 IAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIM 515
+ + +LI N+D++ + + + +A ++L+ +GADV G+ + +
Sbjct: 170 VECVNSLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPL 226
Query: 516 LSELNQNCDLFEKVMLEFALEKGNRNAGG 544
+ + + ++++F + +NA G
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEG 255
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVREGHLEILEILLKAGA 136
T L+LA + VKKLL +GADVNQ + VR E+ +L+ GA
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 441 VAVFSPLMFVAQAGDIAALKALIGRE-ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYA 499
V+ +SP+ A G +L+ LI + +N+ D S + A GH+ + L+
Sbjct: 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKH 114
Query: 500 GADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDA 559
GA V + T + + ++ + D ++ A + + +H AARRG ++
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVEC 172
Query: 560 VRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETA 613
V L + G ++ TPL LA + L+ +GA D+ +G+ +
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA--DVNQGKGQDS 224
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGA-DAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
GRT LH A+ G +LL A + + T P+ LAARL +V+ LI +
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT---PLILAARLAIEGMVEDLITA 140
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVL 392
D+N SG+TAL +A E V +L
Sbjct: 141 DADINAADNSGKTALHWAAAVNNTEAVNIL 170
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 6/160 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH A A LL GADA T +T H A +G I+ L +
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL--LRNRA 108
Query: 364 CDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQ 423
+LN + G T L+++A+ E V+ L A AD SG++A A +V
Sbjct: 109 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAA----AVNNT 164
Query: 424 RAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
AV ++ + + +PL A+ G A KAL+
Sbjct: 165 EAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 204
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 96/256 (37%), Gaps = 72/256 (28%)
Query: 353 STIVQSLIDSGCDLN-TKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASS 411
+ ++ L+ G +LN T ++GET+L ++A++ + + K L AGAD +G++
Sbjct: 30 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT--- 86
Query: 412 IAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLD 471
PL A + + L+ NL+
Sbjct: 87 ----------------------------------PLHAAVAADAMGVFQILLRNRATNLN 112
Query: 472 YQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVML 531
+ +G + +++AA + +L+ A AD+ + SGKT
Sbjct: 113 ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKT------------------- 153
Query: 532 EFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGP 591
ALH AA + +AV +L + D TPL LAAREG
Sbjct: 154 ---------------ALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 198
Query: 592 MCELLISNGAVCDIKN 607
+ L+ N A +I +
Sbjct: 199 ASKALLDNFANREITD 214
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 496 LVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRG 555
L+ AGAD + +G+T + + +F+ ++ A R G L AAR
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 556 DLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALS 615
V L + +N D G T L AA + +L+ + A D ++ + ET L
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 616 LARKNSSMKNDAELVILDEVA 636
LA + S + A +LD A
Sbjct: 190 LAAREGSYE--ASKALLDNFA 208
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 305 RTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGC 364
T L +A + G V +LL GA Q + PIH AAR G+ V SLI G
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 365 DLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
+++ K T L ++ + +Q CVK L ++GAD
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 478 FSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFE----KVMLEF 533
+S + AA GH R L+ G V ++ TA +S L++ C K++L+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNII-----TADHVSPLHEACLGGHLSCVKILLKH 58
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
+ A L A G D V LL G V P+ D +P+ AAR GH
Sbjct: 59 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECV 117
Query: 594 ELLISNGAVCDIKNARGETALSLARKN 620
LI+ G D K + T L LA +N
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACEN 144
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 51/263 (19%)
Query: 339 TEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
+++ P+H AA G+ +++LI G +N T + L + CVK+L K GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 399 FGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAA 458
V+G +A +W +PL +G
Sbjct: 62 -----VNGVTA------DW--------------------------HTPLFNACVSGSWDC 84
Query: 459 LKALIGREELNLDYQDDNGF-SAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLS 517
+ L+ + Q ++ S + AA +GHVE L+ G ++ K + + +
Sbjct: 85 VNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI-----DHKISHLGT 136
Query: 518 ELNQNCDLFEKVMLEFALEKG---NRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPD 574
L C+ ++ ++ LE G N+ G LH AR + LL G +
Sbjct: 137 PLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Query: 575 GDGYTPLMLAAREGHGPMCELLI 597
+G P+ L E P+ +L +
Sbjct: 197 AEGKRPVELVPPE--SPLAQLFL 217
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVREGHLEILEILLKAGASQPA 140
T L+LA + VKKLL +GADVNQ + R E+ +L+ GA A
Sbjct: 136 TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQA 194
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
Query: 444 FSPLMFVAQAGDIAALKALIGR-EELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGAD 502
+SP+ A G +L+ LI + +N+ D S + A GH+ + L+ GA
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 503 VKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRL 562
V + T + + ++ + D ++ A + + +H AARRG ++ V
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNS 119
Query: 563 LTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETA 613
L + G ++ TPL LA + L+ +GA D+ +G+ +
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA--DVNQGKGQDS 168
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 103/263 (39%), Gaps = 57/263 (21%)
Query: 343 PIHLAARLGYSTIVQSLID-SGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGL 401
P+ LAA+ + L+ GC+++ + GETAL I+A Y E VL +A +
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 402 VSVS-----GQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDI 456
++ GQ+A IA N +V RA+L R ++ + +VF
Sbjct: 66 EPMTSELYEGQTALHIAVIN-QNVNLVRALLA--RGASVSARATGSVFH----------- 111
Query: 457 AALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIML 516
NL Y ++ S AA G E+ R L+ GAD++ + G T + +
Sbjct: 112 --------YRPHNLIYYGEHPLS---FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Query: 517 SELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGD-LDAVRLLTSRGYGVNVPDG 575
L+ A Y L + GD L ++ L VP+
Sbjct: 161 ----------------LILQPNKTFACQMYNLLLSYDGGDHLKSLEL---------VPNN 195
Query: 576 DGYTPLMLAAREGHGPMCELLIS 598
G TP LA EG+ M + L+
Sbjct: 196 QGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
SPL+ A+ D+ AL L+ E + + G +A+ +AA ++E L+ A ++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 505 LLNKS-----GKTAIMLSELNQNCDLFEKVMLE------------FALEKGNRNAGGFYA 547
+ G+TA+ ++ +NQN +L ++ F N G +
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 548 LHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPL 581
L AA G + VRLL G + D G T L
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 479 SAVMVAASKGHVEVFRELV-YAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALE- 536
S +++AA + V+ +L+ + G +V G+TA+ ++ L N + V++E A E
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEA-AMVLMEAAPEL 63
Query: 537 ----KGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNV----------PDGDGYT--- 579
+ G ALH A +++ VR L +RG V+ P Y
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 580 PLMLAAREGHGPMCELLISNGAVCDIKNARGETALSL 616
PL AA G + LLI +GA +++ G T L +
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFH------------PIHLAARLG 351
G+T LH A++ V LL+ GA R + FH P+ AA +G
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSA--RATGSVFHYRPHNLIYYGEHPLSFAACVG 132
Query: 352 YSTIVQSLIDSGCDLNTKTESGETALMI 379
IV+ LI+ G D+ + G T L I
Sbjct: 133 SEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 82 TALFLAAHSGNVTLVKKLLS-TGADVNQKLFRG-FATTIAVREGHLEILEILLKAGAS-- 137
+ L LAA +V + KLL G +V+Q+ G A IA +LE +L++A
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 138 -QPACEE------ALLEASCHGQARLAELLM-----------GSDL-IRPHVAV----HS 174
+P E AL A + L L+ GS RPH + H
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 175 LVTACCRGFVDVVDTLMKCGVDINATDRL 203
L A C G ++V L++ G DI A D L
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSL 153
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 484 AASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAG 543
AA +G++ RE + V L+K+G TA+ + + D+ E + + +E +N
Sbjct: 80 AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKL 139
Query: 544 GFYALHCAARRGDLDAVRLLTSRG 567
G ALH AA +G D V+LL ++G
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKG 163
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 548 LHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV-CDIK 606
LH AA+RG+L +R GVN D G T L A GH + E L + + + +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 607 NARGETALSLA 617
N G+TAL A
Sbjct: 137 NKLGDTALHAA 147
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 86/235 (36%), Gaps = 62/235 (26%)
Query: 449 FVAQAGDIAALKALIGREELNLDY-------------QDDNGFSAVMVAASKGHVEVFRE 495
+V + GD A A+I + E LD+ Q+D G +A+ +AA G +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63
Query: 496 LVYAGADVKLLNKSGKTAIMLS----------------------------ELNQNC---- 523
L AGA V + + G TA+ L+ +Q+C
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 524 --------------DLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
+ E ++ L+ N G LH A D + VRLL G
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Query: 570 VNVPDGD-GYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETAL--SLARKNS 621
+N P+ G TPL LA + ELL+ GA + G T L +L R N
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 36/243 (14%)
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVS 403
+HLAA LG ++ V+ L +G + G TAL ++ + + C VL
Sbjct: 49 LHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL----------- 97
Query: 404 VSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
+ + + S+ + Q P +S+ +P +Q +
Sbjct: 98 LQPRPSHPRDASDTYLTQSQDCT---------PDTSH----APAAVDSQPNPENEEEPRD 144
Query: 464 GREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKS----GKTAIMLSEL 519
L L+ ++ +G + + VA E+ R L AGAD LNK G+T + L+
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVE 201
Query: 520 NQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPD--GDG 577
Q + E ++L+ + R GG L A R + RLL R +G P+ GD
Sbjct: 202 AQAASVLE-LLLKAGADPTARMYGGRTPLGSALLRPNPILARLL--RAHGAPEPEDGGDK 258
Query: 578 YTP 580
+P
Sbjct: 259 LSP 261
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTES-GETALMISAKYKQEECVKVLAKAGAD 398
P+H+A + +V+ L D+G DLN + G T L ++ + + +++L KAGAD
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 290 RMLLQHLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRT-QKTEFHPIHLAA 348
R+ L+ +Y+ G T LH A++ V +L GAD P T +T P+HLA
Sbjct: 148 RLQLEAENYD----GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT---PLHLAV 200
Query: 349 RLGYSTIVQSLIDSGCDLNTKTESGETAL 377
+++++ L+ +G D + G T L
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 86/235 (36%), Gaps = 62/235 (26%)
Query: 449 FVAQAGDIAALKALIGREELNLDY-------------QDDNGFSAVMVAASKGHVEVFRE 495
+V + GD A A+I + E LD+ Q+D G +A+ +AA G +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63
Query: 496 LVYAGADVKLLNKSGKTAIMLS----------------------------ELNQNC---- 523
L AGA V + + G TA+ L+ +Q+C
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 524 --------------DLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYG 569
+ E ++ L+ N G LH A D + VRLL G
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Query: 570 VNVPDGD-GYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETAL--SLARKNS 621
+N P+ G TPL LA + ELL+ GA + G T L +L R N
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 36/243 (14%)
Query: 344 IHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVS 403
+HLAA LG ++ V+ L +G + G TAL ++ + + C VL
Sbjct: 49 LHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL----------- 97
Query: 404 VSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
+ + + S+ + Q P +S+ +P +Q +
Sbjct: 98 LQPRPSHPRDASDTYLTQSQDCT---------PDTSH----APAAVDSQPNPENEEEPRD 144
Query: 464 GREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKS----GKTAIMLSEL 519
L L+ ++ +G + + VA E+ R L AGAD LNK G+T + L+
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVE 201
Query: 520 NQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPD--GDG 577
Q + E ++L+ + R GG L A R + RLL R +G P+ GD
Sbjct: 202 AQAASVLE-LLLKAGADPTARMYGGRTPLGSALLRPNPILARLL--RAHGAPEPEDGGDK 258
Query: 578 YTP 580
+P
Sbjct: 259 LSP 261
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTES-GETALMISAKYKQEECVKVLAKAGAD 398
P+H+A + +V+ L D+G DLN + G T L ++ + + +++L KAGAD
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 290 RMLLQHLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRT-QKTEFHPIHLAA 348
R+ L+ +Y+ G T LH A++ V +L GAD P T +T P+HLA
Sbjct: 148 RLQLEAENYD----GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT---PLHLAV 200
Query: 349 RLGYSTIVQSLIDSGCDLNTKTESGETAL 377
+++++ L+ +G D + G T L
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPL 229
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLI-DS 362
G T LH A + A LL ADA +T P+H A + Q LI +
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRT---PLHAAVSADAQGVFQILIRNR 113
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNW-WSVG 421
DL+ + G T L+++A+ E ++ L + AD V G+SA +W +V
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-----LHWAAAVN 168
Query: 422 FQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
A + ++++G N +PL A+ G K L+
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 39/243 (16%)
Query: 355 IVQSLIDSGCDLNTKTE-SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
++ I G L+ +T+ +GETAL ++A+Y + + K L +A AD + G+
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR------ 91
Query: 414 GSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQ 473
+PL A + LI +LD +
Sbjct: 92 -------------------------------TPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 474 DDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533
+G + +++AA + +L+ + ADV ++ GK+A+ + N V+L+
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV-DAAVVLLKN 179
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
K +N L AAR G + ++L ++ D P +A H +
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239
Query: 594 ELL 596
LL
Sbjct: 240 RLL 242
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 18/155 (11%)
Query: 476 NGFSAVMVAA-SKGHVE------------VFRELVYAGADV-KLLNKSGKTAIMLSELNQ 521
+GF+ +M+A+ S G +E V + +Y GA + +++G+TA+ L+
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 522 NCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVR--LLTSRGYGVNVPDGDGYT 579
D K +LE + + ++ G LH AA D V L+ +R ++ DG T
Sbjct: 69 RSDA-AKRLLEASADANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 580 PLMLAAREGHGPMCELLISNGAVCDIKNARGETAL 614
PL+LAAR M E LI++ A + + G++AL
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
G ALH AAR DA + L N+ D G TPL A + ++LI N A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 603 CDIKNARGETALSLARK 619
D + G T L LA +
Sbjct: 117 LDARMHDGTTPLILAAR 133
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLI-DS 362
G T LH A + A LL ADA +T P+H A + Q LI +
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRT---PLHAAVSADAQGVFQILIRNR 114
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNW-WSVG 421
DL+ + G T L+++A+ E ++ L + AD V G+SA +W +V
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-----LHWAAAVN 169
Query: 422 FQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
A + ++++G N +PL A+ G K L+
Sbjct: 170 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 39/243 (16%)
Query: 355 IVQSLIDSGCDLNTKTE-SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
++ I G L+ +T+ +GETAL ++A+Y + + K L +A AD + G+
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR------ 92
Query: 414 GSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQ 473
+PL A + LI +LD +
Sbjct: 93 -------------------------------TPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 474 DDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533
+G + +++AA + +L+ + ADV ++ GK+A+ + N V+L+
Sbjct: 122 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV-DAAVVLLKN 180
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
K +N L AAR G + ++L ++ D P +A H +
Sbjct: 181 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 240
Query: 594 ELL 596
LL
Sbjct: 241 RLL 243
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 18/155 (11%)
Query: 476 NGFSAVMVAA-SKGHVE------------VFRELVYAGADV-KLLNKSGKTAIMLSELNQ 521
+GF+ +M+A+ S G +E V + +Y GA + +++G+TA+ L+
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 522 NCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVR--LLTSRGYGVNVPDGDGYT 579
D K +LE + + ++ G LH AA D V L+ +R ++ DG T
Sbjct: 70 RSDA-AKRLLEASADANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDARMHDGTT 127
Query: 580 PLMLAAREGHGPMCELLISNGAVCDIKNARGETAL 614
PL+LAAR M E LI++ A + + G++AL
Sbjct: 128 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 162
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
G ALH AAR DA + L N+ D G TPL A + ++LI N A
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 603 CDIKNARGETALSLARK 619
D + G T L LA +
Sbjct: 118 LDARMHDGTTPLILAAR 134
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 567 GYGVNVPDGDGYTPLMLAAREGHG------------P--MCELLISNGAVCDIKNARGET 612
G VNV DG+TPLM+A+ G G P + + + ++ + + GET
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 613 ALSLARKNS 621
AL LA + S
Sbjct: 61 ALHLAARYS 69
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 335 RTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAK 394
+T +T +HLAAR S + L+++ D N + G T L + + ++L +
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 112
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLI-DS 362
G T LH A + A LL ADA +T P+H A + Q LI +
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRT---PLHAAVSADAQGVFQILIRNR 113
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNW-WSVG 421
DL+ + G T L+++A+ E ++ L + AD V G+SA +W +V
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-----LHWAAAVN 168
Query: 422 FQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALI 463
A + ++++G N +PL A+ G K L+
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 476 NGFSAVMVAA-SKGHVE------------VFRELVYAGADV-KLLNKSGKTAIMLSELNQ 521
+GF+ +M+A+ S G +E V + +Y GA + +++G TA+ L+
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 522 NCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVR--LLTSRGYGVNVPDGDGYT 579
D K +LE + + ++ G LH AA D V L+ +R ++ DG T
Sbjct: 69 RSDA-AKRLLEASADANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 580 PLMLAAREGHGPMCELLISNGAVCDIKNARGETAL 614
PL+LAAR M E LI++ A + + G++AL
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 91/243 (37%), Gaps = 39/243 (16%)
Query: 355 IVQSLIDSGCDLNTKTE-SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
++ I G L+ +T+ +G TAL ++A Y + + K L +A AD + G++
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRT----- 92
Query: 414 GSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQ 473
PL A + LI +LD +
Sbjct: 93 --------------------------------PLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 474 DDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533
+G + +++AA + +L+ + ADV ++ GK+A+ + N V+L+
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV-DAAVVLLKN 179
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
K +N L AAR G + ++L ++ D P +A H +
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239
Query: 594 ELL 596
LL
Sbjct: 240 RLL 242
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
G ALH AA DA + L N+ D G TPL A + ++LI N A
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 603 CDIKNARGETALSLARK 619
D + G T L LA +
Sbjct: 117 LDARMHDGTTPLILAAR 133
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 483 VAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNA 542
AA++G VE R L+ AGA+ N G+ I + + + + E ++L A A
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPA 76
Query: 543 GGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGH 589
+H AAR G LD + +L G ++V D G P+ LA GH
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 84 LFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVREGHLEILEILLKAGASQPACEE 143
L AA G V V+ LL GA+ N G + G + E+LL GA +
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 144 ALLEASCHGQAR 155
A L H AR
Sbjct: 76 ATLTRPVHDAAR 87
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 39/243 (16%)
Query: 355 IVQSLIDSGCDLNTKTE-SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIA 413
++ I G L+ +T+ +GETAL ++A+Y + + K L +A AD + G+
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR------ 59
Query: 414 GSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQ 473
+PL A + LI +LD +
Sbjct: 60 -------------------------------TPLHAAVSADAQGVFQILIRNRATDLDAR 88
Query: 474 DDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533
+G + +++AA + +L+ + ADV ++ GK+A+ + N V+L+
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN-VDAAVVLLKN 147
Query: 534 ALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMC 593
K +N L AAR G + ++L ++ D P +A H +
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 207
Query: 594 ELL 596
LL
Sbjct: 208 RLL 210
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLI-DS 362
G T LH A + A LL ADA +T P+H A + Q LI +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRT---PLHAAVSADAQGVFQILIRNR 81
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSA 409
DL+ + G T L+++A+ E ++ L + AD V G+SA
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 492 VFRELVYAGADV-KLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHC 550
V + +Y GA + +++G+TA+ L+ D K +LE + + ++ G LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANIQDNMGRTPLH- 63
Query: 551 AARRGDLDAVR--LLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNA 608
AA D V L+ +R ++ DG TPL+LAAR M E LI++ A + +
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123
Query: 609 RGETAL 614
G++AL
Sbjct: 124 LGKSAL 129
Score = 35.8 bits (81), Expect = 0.100, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGA-DAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
GRT LH A+ G +L+ A D + T P+ LAARL +++ LI+S
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT---PLILAARLAVEGMLEDLINS 114
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
D+N + G++AL +A + VL K GA+
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
G ALH AAR DA + L N+ D G TPL A + ++LI N A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 603 CDIKNARGETALSLARK 619
D + G T L LA +
Sbjct: 85 LDARMHDGTTPLILAAR 101
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 492 VFRELVYAGADV-KLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHC 550
V + +Y GA + +++G+TA+ L+ D K +LE + + ++ G LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADAXIQDNMGRTPLH- 60
Query: 551 AARRGDLDAVR--LLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNA 608
AA D V LL +R ++ DG TPL+LAAR M E LI++ A + +
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD 120
Query: 609 RGETAL 614
G++AL
Sbjct: 121 LGKSAL 126
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 39/244 (15%)
Query: 354 TIVQSLIDSGCDLNTKTE-SGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSI 412
+++ I G L+ +T+ +GETAL ++A+Y + + K L +A AD + G+
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGR----- 56
Query: 413 AGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDY 472
+PL A + L+ +LD
Sbjct: 57 --------------------------------TPLHAAVSADAQGVFQILLRNRATDLDA 84
Query: 473 QDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532
+ +G + +++AA + +L+ + ADV ++ GK+A+ + N V+L+
Sbjct: 85 RMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN-VDAAVVLLK 143
Query: 533 FALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPM 592
K +N L AAR G + ++L ++ D P +A H +
Sbjct: 144 NGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 203
Query: 593 CELL 596
LL
Sbjct: 204 VRLL 207
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGA-DAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
GRT LH A+ G +LL A D + T P+ LAARL +++ LI+S
Sbjct: 55 GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTT---PLILAARLALEGMLEDLINS 111
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
D+N + G++AL +A + VL K GA+
Sbjct: 112 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 147
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLI-DS 362
G T LH A + A LL ADA +T P+H A + Q L+ +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRT---PLHAAVSADAQGVFQILLRNR 78
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSA 409
DL+ + G T L+++A+ E ++ L + AD V G+SA
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSA 125
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 544 GFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV- 602
G ALH AAR DA + L + D G TPL A + ++L+ N A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 603 CDIKNARGETALSLARK 619
D + G T L LA +
Sbjct: 82 LDARMHDGTTPLILAAR 98
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNG 600
N G ALH A + V L + G VN PD G+TPL AA +C L+ +G
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 601 A 601
A
Sbjct: 111 A 111
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
G T LH+AI V L++ GA+ P + P+H AA + I +L+ G
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSP---DSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 364 CDLNTKTES-GETALMISAKYKQ--EECVKVLAKAGADFGLVS 403
+ T S G TA Y++ +C LA GL++
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 483 VAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNA 542
AA++G VE R L+ AGA N G+ I + + + + E ++L A A
Sbjct: 18 TAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPA 76
Query: 543 GGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGH 589
+H AAR G LD + +L G ++V D G P+ LA GH
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADF 399
P AAR + L++ D++ E+G TAL+ A ++CV++LA+AGAD
Sbjct: 47 PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT L G V +L GAD R + +H+AA +V++L++ G
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDH--RDMRGGLTALHMAAGYVRPEVVEALVELG 133
Query: 364 CDLNTKTESGETALMIS 380
D+ + E G TAL ++
Sbjct: 134 ADIEVEDERGLTALELA 150
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 346 LAARLGYSTIVQSLIDSGCDLNTKT-ESGETALMISAKYKQEECVKVLAKAGADFGLVSV 404
A LG V+ L ++G DL+ + G TAL ++A Y + E V+ L + GAD +
Sbjct: 82 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141
Query: 405 SGQSASSIA 413
G +A +A
Sbjct: 142 RGLTALELA 150
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+P A+ D AL L+ E+ ++D D+NG +A++ A G + R L AGAD+
Sbjct: 46 TPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 505 LLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLT 564
+ G G ALH AA + V L
Sbjct: 104 HRDMRG---------------------------------GLTALHMAAGYVRPEVVEALV 130
Query: 565 SRGYGVNVPDGDGYTPLMLA 584
G + V D G T L LA
Sbjct: 131 ELGADIEVEDERGLTALELA 150
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPD-GDGYTPLMLAAREGHGPMCELLISN 599
+ G AL A G VRLL G ++ D G T L +AA + E L+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 600 GAVCDIKNARGETALSLARK 619
GA ++++ RG TAL LAR+
Sbjct: 133 GADIEVEDERGLTALELARE 152
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVREGHL--EILEILLKAGAS 137
TAL A G+ V+ L GAD++ + RG T + + G++ E++E L++ GA
Sbjct: 78 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADF 399
P AAR + L++ D++ E+G TAL+ A ++CV++LA+AGAD
Sbjct: 48 PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 304 GRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG 363
GRT L G V +L GAD R + +H+AA +V++L++ G
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAEAGADLDH--RDMRGGLTALHMAAGYVRPEVVEALVELG 134
Query: 364 CDLNTKTESGETALMIS 380
D+ + E G TAL ++
Sbjct: 135 ADIEVEDERGLTALELA 151
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 346 LAARLGYSTIVQSLIDSGCDLNTKT-ESGETALMISAKYKQEECVKVLAKAGADFGLVSV 404
A LG V+ L ++G DL+ + G TAL ++A Y + E V+ L + GAD +
Sbjct: 83 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142
Query: 405 SGQSASSIA 413
G +A +A
Sbjct: 143 RGLTALELA 151
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 445 SPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVK 504
+P A+ D AL L+ E+ ++D D+NG +A++ A G + R L AGAD+
Sbjct: 47 TPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 505 LLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLT 564
+ G G ALH AA + V L
Sbjct: 105 HRDMRG---------------------------------GLTALHMAAGYVRPEVVEALV 131
Query: 565 SRGYGVNVPDGDGYTPLMLA 584
G + V D G T L LA
Sbjct: 132 ELGADIEVEDERGLTALELA 151
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 541 NAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPD-GDGYTPLMLAAREGHGPMCELLISN 599
+ G AL A G VRLL G ++ D G T L +AA + E L+
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
Query: 600 GAVCDIKNARGETALSLARK 619
GA ++++ RG TAL LAR+
Sbjct: 134 GADIEVEDERGLTALELARE 153
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 82 TALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVREGHL--EILEILLKAGAS 137
TAL A G+ V+ L GAD++ + RG T + + G++ E++E L++ GA
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDS 362
+G + ++AI V LL+ GA + EF P+H AA L + IV+ L+ S
Sbjct: 30 HGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEF-PLHQAATLEDTKIVKILLFS 84
Query: 363 GCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGF 422
G D + + G TAL + + VK+ K +G W F
Sbjct: 85 GLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTG-----------WKTSF 133
Query: 423 QRAV 426
AV
Sbjct: 134 YHAV 137
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 334 IRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLA 393
I++ IH+AAR G + V+ LI++G + G TAL ++ K+ + K LA
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA 73
Query: 394 KAG 396
G
Sbjct: 74 SVG 76
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 467 ELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLS 517
+LN DD + VAA KG + R L+ G + N+ G TA+ L+
Sbjct: 10 KLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 548 LHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAV 602
+H AAR+G D VR L G + + G T L LA + G + L S G V
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 344 IHLAARLGYST---IVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFG 400
+HLA R T IV L+ + +L+ +T G TAL EC+K+L + A
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232
Query: 401 LVSVSGQSASSIA 413
+ + SG++ IA
Sbjct: 233 IANESGETPLDIA 245
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 524 DLFEKVMLEFALEKGNRNAGGFYALHCAAR---RGDLDAVRLLTSRGYGVNVPDGDGYTP 580
DL EK+ L N + ALH A R R L V L ++ G G T
Sbjct: 155 DLTEKIPL------ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 208
Query: 581 LMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARK 619
L + +LL+ A +I N GET L +A++
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247
>pdb|2AWI|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AWI|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AWI|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AWI|D Chain D, Structure Of Prgx Y153c Mutant
pdb|2AWI|E Chain E, Structure Of Prgx Y153c Mutant
pdb|2AWI|F Chain F, Structure Of Prgx Y153c Mutant
pdb|2AWI|G Chain G, Structure Of Prgx Y153c Mutant
pdb|2AWI|H Chain H, Structure Of Prgx Y153c Mutant
pdb|2AWI|I Chain I, Structure Of Prgx Y153c Mutant
pdb|2AWI|J Chain J, Structure Of Prgx Y153c Mutant
pdb|2AWI|K Chain K, Structure Of Prgx Y153c Mutant
pdb|2AWI|L Chain L, Structure Of Prgx Y153c Mutant
Length = 317
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
V F L AG + K +N++GK +++S++ N DLF+K
Sbjct: 56 VNFFEILNRAGXNTKSVNETGKEKLLISKIFTNPDLFDK 94
>pdb|2AXZ|A Chain A, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|B Chain B, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|C Chain C, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|D Chain D, Crystal Structure Of PrgxCCF10 COMPLEX
Length = 317
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
V F L AG + K +N++GK +++S++ N DLF+K
Sbjct: 56 VNFFEILNRAGXNTKSVNETGKEKLLISKIFTNPDLFDK 94
>pdb|2AXU|A Chain A, Structure Of Prgx
pdb|2AXU|B Chain B, Structure Of Prgx
pdb|2AXU|C Chain C, Structure Of Prgx
pdb|2AXU|D Chain D, Structure Of Prgx
pdb|2AXU|E Chain E, Structure Of Prgx
pdb|2AXU|F Chain F, Structure Of Prgx
pdb|2AXU|G Chain G, Structure Of Prgx
pdb|2AXU|H Chain H, Structure Of Prgx
pdb|2AXU|I Chain I, Structure Of Prgx
pdb|2AXU|J Chain J, Structure Of Prgx
pdb|2AXU|K Chain K, Structure Of Prgx
pdb|2AXU|L Chain L, Structure Of Prgx
Length = 317
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
V F L AG + K +N++GK +++S++ N DLF+K
Sbjct: 56 VNFFEILNRAGXNTKSVNETGKEKLLISKIFTNPDLFDK 94
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
V F L AG + K +N++GK +++S++ N DLF+K
Sbjct: 56 VNFFEILNRAGMNTKSVNETGKEKLLISKIFTNPDLFDK 94
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 470 LDYQDDNGFSAVMVAASKGHVEVFRELVYAGADVKLLNKSG 510
L+ QD NG + + +AA G++ + L+ GAD + NKSG
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
V F L AG + K +N++GK +++S++ N DLF+K
Sbjct: 56 VNFFEILNRAGMNTKSVNETGKEKLLISKIFTNPDLFDK 94
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 490 VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEK 528
V F L AG + K +N++GK +++S++ N DLF+K
Sbjct: 56 VNFFEILNRAGMNTKSVNETGKEKLLISKIFTNPDLFDK 94
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 343 PIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGAD 398
P+ LAARL +++ LI+S D+N + G++AL +A + VL K GA+
Sbjct: 18 PLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 696 KNRRGKGDV-NEPGVFHIVTTKNNEVHFVCQGG 727
+ RR KG++ +E V HIVT NEVH C G
Sbjct: 541 RERRRKGEISDEVNVGHIVTDFINEVHVNCDSG 573
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 696 KNRRGKGDV-NEPGVFHIVTTKNNEVHFVCQGG 727
+ RR KG++ +E V HIVT NEVH C G
Sbjct: 544 RERRRKGEISDEVNVGHIVTDFINEVHVNCDSG 576
>pdb|2LLX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Polypeptide Chain Release Factor Erf1
Length = 150
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 60 VVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLS 101
+V EGK +V ++FE FK T+L+L + + + LLS
Sbjct: 100 IVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLS 141
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 455 DIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRE---LVYAGADVK 504
D+ L A + + ++ +DY+D++GF A +V ++E+ E + A AD+K
Sbjct: 87 DVKELVADMRKHDVPIDYEDESGFMAFVVDPDGYYIELLNEKTMMEKAEADMK 139
>pdb|3E1Y|A Chain A, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|B Chain B, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|C Chain C, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|D Chain D, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 451
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 60 VVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLS 101
+V EGK +V ++FE FK T+L+L + + + LLS
Sbjct: 114 IVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLS 155
>pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryotic Release Factor
Erf1-Mechanism Of Stop Codon Recognition And
Peptidyl-Trna Hydrolysis
Length = 437
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 60 VVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLS 101
+V EGK +V ++FE FK T+L+L + + + LLS
Sbjct: 100 IVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLS 141
>pdb|3J2K|6 Chain 6, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 411
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 60 VVLREGKPSEVRVEFEEFKSDVTALFLAAHSGNVTLVKKLLS 101
+V EGK +V ++FE FK T+L+L + + + LLS
Sbjct: 91 IVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLS 132
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 309 HHAILCG-CT-GAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLID 361
HHA+ CG CT G +A S A+ P R + E +L GY TI+ ++ D
Sbjct: 102 HHALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITD 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,377,177
Number of Sequences: 62578
Number of extensions: 815013
Number of successful extensions: 3352
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1823
Number of HSP's gapped (non-prelim): 918
length of query: 748
length of database: 14,973,337
effective HSP length: 106
effective length of query: 642
effective length of database: 8,340,069
effective search space: 5354324298
effective search space used: 5354324298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)