Query 004504
Match_columns 748
No_of_seqs 510 out of 4223
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 18:24:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004504.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1811-1815//hhsearch_pdb/004504hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 479.2 47.6 386 78-641 12-398 (437)
2 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 473.3 48.1 384 102-663 3-387 (437)
3 4g8k_A 2-5A-dependent ribonucl 1.0 1 1 353.1 34.2 301 217-605 25-329 (337)
4 4g8k_A 2-5A-dependent ribonucl 1.0 1 1 334.9 34.9 292 303-649 24-330 (337)
5 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 326.6 33.1 288 303-661 57-347 (351)
6 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 322.1 19.5 265 303-645 93-371 (373)
7 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 316.4 20.5 321 80-603 37-372 (373)
8 1wdy_A 2-5A-dependent ribonucl 1.0 1 1 313.7 31.4 274 217-607 5-283 (285)
9 1wdy_A 2-5A-dependent ribonucl 1.0 1 1 311.0 33.5 265 303-651 4-284 (285)
10 3ljn_A Hypothetical protein; a 1.0 1 1 308.8 13.6 264 300-622 16-301 (364)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=479.22 Aligned_cols=386 Identities=28% Similarity=0.379 Sum_probs=314.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 5871499999960999999999976999875655672-678999809499999999769998531129999994086999
Q 004504 78 KSDVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGF-ATTIAVREGHLEILEILLKAGASQPACEEALLEASCHGQARL 156 (748)
Q Consensus 78 ~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~~~~g~-~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~~ 156 (748)
..|.||||+||..|+.++|++|+++|++++..+..+. |||+|+..|+.+++++|+++|++++.
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------------- 75 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA---------------- 75 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC----------------
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----------------
T ss_conf 8998889999987899999999986999998888998799999981979999999958999998----------------
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 99983089888776651789976119987999999879997621035642028765578899878999983999999999
Q 004504 157 AELLMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDRLLLQSLKPSLHTNVDCSALVAAVVSRQVSVVQLL 236 (748)
Q Consensus 157 v~~L~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~d~n~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~L 236 (748)
.+..+.|||+.|+..|+.+++++|+++|++++..+. .+.|||++|+..|+.+++++|
T Consensus 76 ----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-------------~g~t~L~~A~~~g~~~~v~~L 132 (437)
T 1n11_A 76 ----------KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-------------AGHTPLHIAAREGHVETVLAL 132 (437)
T ss_dssp ----------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-------------TCCCHHHHHHHHTCHHHHHHH
T ss_pred ----------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-------------CCCCHHHHHHHCCCHHHHHHH
T ss_conf ----------799999899999987989999999967999887799-------------998599999985999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 98699987211258764567774013540356775311013579745019899999603389999987419999998499
Q 004504 237 LQAGANTDMKVRLGAWSWDTTTGEEFRVGAGLAEPYAITWCAVEYFEITGSILRMLLQHLSYNSPHYGRTLLHHAILCGC 316 (748)
Q Consensus 237 l~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~g~t~L~~A~~~g~ 316 (748)
+++|++.+.. +..|.||||.|+..|+
T Consensus 133 l~~~~~~~~~------------------------------------------------------~~~g~t~L~~A~~~g~ 158 (437)
T 1n11_A 133 LEKEASQACM------------------------------------------------------TKKGFTPLHVAAKYGK 158 (437)
T ss_dssp HHTTCCSCCC------------------------------------------------------CTTSCCHHHHHHHTTC
T ss_pred HHCCCCCCCC------------------------------------------------------CCCCCCHHHHHHHCCC
T ss_conf 9679987677------------------------------------------------------9999879999997698
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 99999999689998898668889881899999749999999999769998888999973889999759988999999849
Q 004504 317 TGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAG 396 (748)
Q Consensus 317 ~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 396 (748)
.+++++|++.|++++. .+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|
T Consensus 159 ~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 159 VRVAELLLERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHHHHHHHHTTCCTTC---CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf 9999999967999877---7899988899999819999999998479998876778998899999869899999999769
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99875335899832331105654046999999998399999998778718999997099999999984489886446999
Q 004504 397 ADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDN 476 (748)
Q Consensus 397 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~ 476 (748)
++++..+..| .||||.|+..++.+++++|++.+ .+++..+..
T Consensus 236 ~~~~~~~~~g-------------------------------------~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~ 277 (437)
T 1n11_A 236 GSANAESVQG-------------------------------------VTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKS 277 (437)
T ss_dssp CCTTCCCTTC-------------------------------------CCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTT
T ss_pred CCCCCCCCCC-------------------------------------CCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCC
T ss_conf 9988879899-------------------------------------97999999778899999999669-999987999
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
Q ss_conf 97199999981979999999987999766777898387799971790699999999755208988998539999996499
Q 004504 477 GFSAVMVAASKGHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGD 556 (748)
Q Consensus 477 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~ 556 (748)
|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus 278 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------------------------------~g~t~L~~A~~~g~ 323 (437)
T 1n11_A 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTR----------------------------------MGYTPLHVASHYGN 323 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS----------------------------------SCCCHHHHHHHSSC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----------------------------------CCCCHHHHHHHCCC
T ss_conf 99799999984999999999848756788799----------------------------------99889999998694
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999699999999999994989999819989999999599998999899985899998669997414787799999
Q 004504 557 LDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVILDEVA 636 (748)
Q Consensus 557 ~~~v~~Ll~~g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~a~~~~~~~~~~~~~~~~~~~ 636 (748)
.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|...+. . +++
T Consensus 324 ~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~-~---------~~~ 393 (437)
T 1n11_A 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY-I---------SVT 393 (437)
T ss_dssp SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC-H---------HHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC-H---------HHH
T ss_conf 999999996699999889999889999998781999999997768998878998989999988495-8---------999
Q ss_pred HHHHH
Q ss_conf 99993
Q 004504 637 RMLVL 641 (748)
Q Consensus 637 ~~L~~ 641 (748)
++|..
T Consensus 394 ~~l~~ 398 (437)
T 1n11_A 394 DVLKV 398 (437)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99986
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=473.31 Aligned_cols=384 Identities=24% Similarity=0.330 Sum_probs=250.8
Q ss_pred CCCCCCCCCCCCH-HHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 6999875655672-678999809499999999769998531129999994086999999830898887766517899761
Q 004504 102 TGADVNQKLFRGF-ATTIAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAELLMGSDLIRPHVAVHSLVTACC 180 (748)
Q Consensus 102 ~ga~~n~~~~~g~-~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~L~~A~~ 180 (748)
.|++++..+..|. |||+|+..|+.+++++|+++|++++. .+..+.|||+.|+.
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--------------------------~~~~~~t~L~~A~~ 56 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV--------------------------SNVKVETPLHMAAR 56 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCC--------------------------SSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC--------------------------CCCCCCCHHHHHHH
T ss_conf 7777666688998889999987899999999986999998--------------------------88899879999998
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 19987999999879997621035642028765578899878999983999999999986999872112587645677740
Q 004504 181 RGFVDVVDTLMKCGVDINATDRLLLQSLKPSLHTNVDCSALVAAVVSRQVSVVQLLLQAGANTDMKVRLGAWSWDTTTGE 260 (748)
Q Consensus 181 ~g~~~~v~~Ll~~g~d~n~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 260 (748)
.|+.+++++|+++|++++..+. .+.|||++|+..|+.+++++|+++|++++..
T Consensus 57 ~g~~~~v~~Ll~~g~~~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-------------- 109 (437)
T 1n11_A 57 AGHTEVAKYLLQNKAKVNAKAK-------------DDQTPLHCAARIGHTNMVKLLLENNANPNLA-------------- 109 (437)
T ss_dssp HTCHHHHHHHHHHTCCSSCCCT-------------TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC--------------
T ss_pred CCCHHHHHHHHHCCCCCCCCCC-------------CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC--------------
T ss_conf 1979999999958999998799-------------9998999999879899999999679998877--------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 13540356775311013579745019899999603389999987419999998499999999996899988986688898
Q 004504 261 EFRVGAGLAEPYAITWCAVEYFEITGSILRMLLQHLSYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTE 340 (748)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 340 (748)
+..|.||||.|+..|+.+++++|++.+++.+. .+..+
T Consensus 110 ----------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~g 146 (437)
T 1n11_A 110 ----------------------------------------TTAGHTPLHIAAREGHVETVLALLEKEASQAC---MTKKG 146 (437)
T ss_dssp ----------------------------------------CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC---CCTTS
T ss_pred ----------------------------------------CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCC
T ss_conf ----------------------------------------99998599999985999999999967998767---79999
Q ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 81899999749999999999769998888999973889999759988999999849998753358998323311056540
Q 004504 341 FHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSV 420 (748)
Q Consensus 341 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~ 420 (748)
.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..
T Consensus 147 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--------------- 211 (437)
T 1n11_A 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--------------- 211 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTT---------------
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC---------------
T ss_conf 87999999769899999999679998777899988899999819999999998479998876778---------------
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 46999999998399999998778718999997099999999984489886446999971999999819799999999879
Q 004504 421 GFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGREELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAG 500 (748)
Q Consensus 421 ~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 500 (748)
|.+|||+|+..++.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|+++|
T Consensus 212 ----------------------g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 268 (437)
T 1n11_A 212 ----------------------GYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268 (437)
T ss_dssp ----------------------CCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred ----------------------CCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf ----------------------998899999869899999999769-998887989997999999778899999999669
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99766777898387799971790699999999755208988998539999996499999999996999999999999949
Q 004504 501 ADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTP 580 (748)
Q Consensus 501 a~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~tp 580 (748)
++++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 269 ~~~~~~----------------------------------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 314 (437)
T 1n11_A 269 ANGNLG----------------------------------NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314 (437)
T ss_dssp CCTTCC----------------------------------CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH
T ss_pred CCCCCC----------------------------------CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 999987----------------------------------9999979999998499999999984875678879999889
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 89999819989999999599998999899985899998669997414787799999999939998654468999988524
Q 004504 581 LMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGKGTPHRK 660 (748)
Q Consensus 581 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~L~~~ga~~~~~~~~g~t~~~~~ 660 (748)
||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..+.. +++++|+++|++++.+|..|+||++++
T Consensus 315 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~----------~iv~~Ll~~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT----------DIVTLLLKNGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----------HHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHH----------HHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 9999986949999999966999998899998899999987819----------999999977689988789989899999
Q ss_pred HHH
Q ss_conf 566
Q 004504 661 DIR 663 (748)
Q Consensus 661 ~~~ 663 (748)
...
T Consensus 385 ~~~ 387 (437)
T 1n11_A 385 KRL 387 (437)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 884
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00 E-value=1 Score=353.13 Aligned_cols=301 Identities=27% Similarity=0.338 Sum_probs=205.0
Q ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99878999983999999999986999872112587645677740135403567753110135797450198999996033
Q 004504 217 DCSALVAAVVSRQVSVVQLLLQAGANTDMKVRLGAWSWDTTTGEEFRVGAGLAEPYAITWCAVEYFEITGSILRMLLQHL 296 (748)
Q Consensus 217 ~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~ 296 (748)
+.|+|+.|+.+|+.++|++||++|++++..
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-------------------------------------------------- 54 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-------------------------------------------------- 54 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCC--------------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCC--------------------------------------------------
T ss_conf 984999999848999999999879997834--------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 89999987419999998499999999996899988986688898818999997499999999997699988889999738
Q 004504 297 SYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETA 376 (748)
Q Consensus 297 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~ 376 (748)
.+..|.||||+|+..|+.++|++|+++|++++. .+..+.++++.++..+...++..+++.+++++..+..|.||
T Consensus 55 ---~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~ 128 (337)
T 4g8k_A 55 ---EEEGGWTPLHNAVQMSREDIVELLLRHGADPVL---RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTA 128 (337)
T ss_dssp ---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBH
T ss_pred ---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHH---HCCCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCH
T ss_conf ---898996999999984989999999875995333---21578864677775054135677631020055530379987
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf 89999759988999999849998753358998323311056540469999999983999999987787189999970999
Q 004504 377 LMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDI 456 (748)
Q Consensus 377 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~ 456 (748)
|++|+..++.+++++|+++|++++....... .....+..|.||||+|+..|+.
T Consensus 129 l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~---------------------------~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKE---------------------------DQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCC--------------------------------CTTCSCCHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCHHHCCCC---------------------------CCCCCCCCCCCHHHHHHHCCCH
T ss_conf 9999871869999999975998343330132---------------------------2000367897699999987789
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999844898864469999719999998197----9999999987999766777898387799971790699999999
Q 004504 457 AALKALIGREELNLDYQDDNGFSAVMVAASKGH----VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532 (748)
Q Consensus 457 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~ 532 (748)
+++++|+++.+++++..+..|.|+++.++..+. ..++++|+++|++++.++..|+||||+|+..++.+.++.|+..
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986349896765788972789999973756689999999977999887689999878999985125899999873
Q ss_pred HHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 7552089889985399999964999999999969999999999999498999981998999999959999899
Q 004504 533 FALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDI 605 (748)
Q Consensus 533 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 605 (748)
.+.+++..+..|+||||+|++.|+.+++++|+++|+++|.. +|||+|+..|+.++|++||++||++|.
T Consensus 262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-----CHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 48756676899999999999868799999999878999987-----899999986999999999987699898
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00 E-value=1 Score=334.91 Aligned_cols=292 Identities=27% Similarity=0.367 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87419999998499999999996899988986688898818999997499999999997699988889999738899997
Q 004504 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAK 382 (748)
Q Consensus 303 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~ 382 (748)
.|.|+|+.|+..|+.++|++|+++|++++.. .+..|.||||+|+..|+.+++++|+++|++++.++..+.++++.++.
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~--~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHH
T ss_conf 8984999999848999999999879997834--89899699999998498999999987599533321578864677775
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 59988999999849998753358998323311056540469999999983999999987787189999970999999999
Q 004504 383 YKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462 (748)
Q Consensus 383 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L 462 (748)
.+...++..++..+++++..+..|.| |++.|+..++.++++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t-------------------------------------~l~~A~~~~~~~~~~~l 144 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFT-------------------------------------AFMEAAVYGKVKALKFL 144 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCB-------------------------------------HHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCC-------------------------------------HHHHHHHCCCHHHHHHH
T ss_conf 05413567763102005553037998-------------------------------------79999871869999999
Q ss_pred HHCCCCCCC----------CCCCCCCHHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCC---HHHHHH
Q ss_conf 844898864----------469999719999998197999999998-799976677789838779997179---069999
Q 004504 463 IGREELNLD----------YQDDNGFSAVMVAASKGHVEVFRELVY-AGADVKLLNKSGKTAIMLSELNQN---CDLFEK 528 (748)
Q Consensus 463 l~~~~~~~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~a~~~~~---~~~~~~ 528 (748)
++.+ ++++ ..+..|.||||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+. .+.+..
T Consensus 145 l~~g-a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~ 223 (337)
T 4g8k_A 145 YKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 223 (337)
T ss_dssp HHTT-CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHH
T ss_pred HHCC-CCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 9759-983433301322000367897699999987789999999863498967657889727899999737566899999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99997552089889985399999964999999999969-99999999999949899998199899999995999989998
Q 004504 529 VMLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSR-GYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKN 607 (748)
Q Consensus 529 ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d 607 (748)
+|...+.+++.++..|+||||+|+..++.+++++|++. |+++|.+|..|+||||+|+..|+.++|++||++|||+|.+
T Consensus 224 lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~- 302 (337)
T 4g8k_A 224 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG- 302 (337)
T ss_dssp HHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-
T ss_conf 9997799988768999987899998512589999987348756676899999999999868799999999878999987-
Q ss_pred CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999858999986699974147877999999999399986544
Q 004504 608 ARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKH 649 (748)
Q Consensus 608 ~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~L~~~ga~~~~~ 649 (748)
+||++|+.+++. +++++|+++||+++..
T Consensus 303 ----~~L~~A~~~~~~----------~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 303 ----DLVMTARRNYDH----------SLVKVLLSHGAKEDFH 330 (337)
T ss_dssp ----CHHHHHHHTTCH----------HHHHHHHHTTCCC---
T ss_pred ----CHHHHHHHCCCH----------HHHHHHHHCCCCCCCC
T ss_conf ----899999986999----------9999999876998989
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=326.57 Aligned_cols=288 Identities=27% Similarity=0.257 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87419999998499999999996899988986688898818999997499999999997699988889999738899997
Q 004504 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAK 382 (748)
Q Consensus 303 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~ 382 (748)
.|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~ 133 (351)
T 3utm_A 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHA---KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 998899999985999999999976999976---17999808999997788999999997799999778889989999997
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 59988999999849998753358998323311056540469999999983999999987787189999970999999999
Q 004504 383 YKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462 (748)
Q Consensus 383 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L 462 (748)
.++.+++++|+++|++++..+..+.++++++... ...+.+..... ..++..++..++.+.++.+
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~----~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 197 (351)
T 3utm_A 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP----ELRERLTYEFK------------GHSLLQAAREADLAKVKKT 197 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSH----HHHHHHHHHHH------------HHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHC------------CCHHHHHHHHCCHHHHHHH
T ss_conf 4999999999976999863367898623777533----25899986404------------2179999983249999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHC---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8448988644699997199999981---9799999999879997667778983877999717906999999997552089
Q 004504 463 IGREELNLDYQDDNGFSAVMVAASK---GHVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGN 539 (748)
Q Consensus 463 l~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~ 539 (748)
+.... .....+..|.||||+|+.. +..+++++|++.|++++.++..|
T Consensus 198 l~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g----------------------------- 247 (351)
T 3utm_A 198 LALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF----------------------------- 247 (351)
T ss_dssp TTTCC-TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTC-----------------------------
T ss_pred HHHHC-CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC-----------------------------
T ss_conf 97000-133578889988999999717558999999997599967769999-----------------------------
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 88998539999996499999999996999999999999949899998199899999995999989998999858999986
Q 004504 540 RNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNARGETALSLARK 619 (748)
Q Consensus 540 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~a~~ 619 (748)
.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|..
T Consensus 248 -----~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 248 -----MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp -----CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCH
T ss_pred -----CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf -----989999998598989999998799987759999988999998285999999998499988868899883656369
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 699974147877999999999399986544689999885245
Q 004504 620 NSSMKNDAELVILDEVARMLVLGGGHVLKHTKGGKGTPHRKD 661 (748)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~L~~~ga~~~~~~~~g~t~~~~~~ 661 (748)
++.++|.+.+.. ....+.+++..+.
T Consensus 323 --------------~~~~~l~~~~~~---~~~~~~~~l~~A~ 347 (351)
T 3utm_A 323 --------------AVQQILSESTPM---RTSDVDYRLLEAS 347 (351)
T ss_dssp --------------HHHHHHHHC-------------------
T ss_pred --------------HHHHHHHHCCCC---CCCCCEEEHHHHH
T ss_conf --------------999998760622---3676222002000
No 6
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=322.10 Aligned_cols=265 Identities=25% Similarity=0.283 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH--------HCCCCCCCCCCCCC
Q ss_conf 8741999999849999999999689998898668889881899999749999999999--------76999888899997
Q 004504 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLI--------DSGCDLNTKTESGE 374 (748)
Q Consensus 303 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll--------~~g~~~~~~~~~g~ 374 (748)
.|.|+||.|+..+. +++++|+.. +++.. .+..|.||||+|+..|+.+++++|+ +.|++++.++..|.
T Consensus 93 ~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~--d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~ 167 (373)
T 2fo1_E 93 ESPIKLHTEAAGSY-AITEPITRE--SVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167 (373)
T ss_dssp -CCCHHHHHHHSSS-CCCSCCSTT--TTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred CCCCHHHHHHCCCC-HHHHHHCCC--CCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98657999863871-688875002--34335--77679888999987798778999999999999865998767789998
Q ss_pred CHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 38899997599889999998499987533589983233110565404699999999839999999877871899999709
Q 004504 375 TALMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAG 454 (748)
Q Consensus 375 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~ 454 (748)
||||+|+..++.+++++|+++|++++..+..| .||||+|+..+
T Consensus 168 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-------------------------------------~t~L~~A~~~g 210 (373)
T 2fo1_E 168 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSE-------------------------------------RSALHQAAANR 210 (373)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC-------------------------------------CCHHHHHHHTT
T ss_pred CHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC-------------------------------------CCHHHHHHHCC
T ss_conf 98999998694999999997799976158989-------------------------------------87999998779
Q ss_pred CHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHCC---CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 9999999984489--886446999971999999819---79999999987999766777898387799971790699999
Q 004504 455 DIAALKALIGREE--LNLDYQDDNGFSAVMVAASKG---HVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKV 529 (748)
Q Consensus 455 ~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~ga~~~~~~~~g~t~L~~a~~~~~~~~~~~l 529 (748)
+.+++++|++.+. .+++..+..|.||||+|+..+ +.+++++|+++|++++..+.
T Consensus 211 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~--------------------- 269 (373)
T 2fo1_E 211 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA--------------------- 269 (373)
T ss_dssp CHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG---------------------
T ss_pred CHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC---------------------
T ss_conf 98899999845765567322377899799999983783449999999977997655554---------------------
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 99975520898899853999999649999999999699-99999999999498999981998999999959999899989
Q 004504 530 MLEFALEKGNRNAGGFYALHCAARRGDLDAVRLLTSRG-YGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKNA 608 (748)
Q Consensus 530 l~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~ 608 (748)
...+..+..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 270 -----~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~ 344 (373)
T 2fo1_E 270 -----ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344 (373)
T ss_dssp -----GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred -----CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf -----445755545888999999809999999999736898667698999899999986899999999976998547798
Q ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9985899998669997414787799999999939998
Q 004504 609 RGETALSLARKNSSMKNDAELVILDEVARMLVLGGGH 645 (748)
Q Consensus 609 ~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~L~~~ga~ 645 (748)
.|.|||++|+..+.. +++++|+++|++
T Consensus 345 ~g~t~l~~A~~~g~~----------~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 345 TDHTARQLAQANNHH----------NIVDIFDRCRPE 371 (373)
T ss_dssp SSCCHHHHHHHTTCH----------HHHHHHHTTC--
T ss_pred CCCCHHHHHHHCCCH----------HHHHHHHHCCCC
T ss_conf 999999999985988----------899998733734
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=316.40 Aligned_cols=321 Identities=20% Similarity=0.191 Sum_probs=234.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 71499999960999999999976999875655672678999809499999999769998531129999994086999999
Q 004504 80 DVTALFLAAHSGNVTLVKKLLSTGADVNQKLFRGFATTIAVREGHLEILEILLKAGASQPACEEALLEASCHGQARLAEL 159 (748)
Q Consensus 80 ~~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~~~~g~~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~~v~~ 159 (748)
...+|..|+..|+.+.++.++++...+... ..++..+...|+++++++++...
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~------------------------ 89 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPNP---QGYGNGNDFLGDFNHTNLQIPTE------------------------ 89 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCCCCCCCC------------------------
T ss_conf 025332456776443014366641345686---45678877555566531224667------------------------
Q ss_pred HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH--
Q ss_conf 830898887766517899761199879999998799976210356420287655788998789999839999999999--
Q 004504 160 LMGSDLIRPHVAVHSLVTACCRGFVDVVDTLMKCGVDINATDRLLLQSLKPSLHTNVDCSALVAAVVSRQVSVVQLLL-- 237 (748)
Q Consensus 160 L~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~d~n~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll-- 237 (748)
.+..+.|+||.|+..+. +++++|++ .+++..+. ..|.||||+|+..|+.+++++|+
T Consensus 90 -------~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~------------~~g~t~Lh~Aa~~g~~~~v~~Ll~~ 147 (373)
T 2fo1_E 90 -------PEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDP------------RHNRTVLHWIASNSSAEKSEDLIVH 147 (373)
T ss_dssp -----------CCCHHHHHHHSSS-CCCSCCST--TTTTTCCC------------SSCCCHHHHHHCTTCCSCCTTHHHH
T ss_pred -------CCCCCCCHHHHHHCCCC-HHHHHHCC--CCCCCCCC------------CCCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf -------89998657999863871-68887500--23433577------------6798889999877987789999999
Q ss_pred ------HCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf ------86999872112587645677740135403567753110135797450198999996033899999874199999
Q 004504 238 ------QAGANTDMKVRLGAWSWDTTTGEEFRVGAGLAEPYAITWCAVEYFEITGSILRMLLQHLSYNSPHYGRTLLHHA 311 (748)
Q Consensus 238 ------~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~g~t~L~~A 311 (748)
+.|++++.. +..|.||||+|
T Consensus 148 ~~~~ll~~ga~vn~~------------------------------------------------------d~~g~TpL~~A 173 (373)
T 2fo1_E 148 EAKECIAAGADVNAM------------------------------------------------------DCDENTPLMLA 173 (373)
T ss_dssp HHHHHHHTCCCTTCC------------------------------------------------------CTTSCCHHHHH
T ss_pred HHHHHHHCCCCCCCC------------------------------------------------------CCCCCCHHHHH
T ss_conf 999998659987677------------------------------------------------------89998989999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHCC---C
Q ss_conf 9849999999999689998898668889881899999749999999999769---998888999973889999759---9
Q 004504 312 ILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSG---CDLNTKTESGETALMISAKYK---Q 385 (748)
Q Consensus 312 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~---~ 385 (748)
+..|+.+++++|+++|++++. .+..+.||||+|+..|+.+++++|++++ ++++..+..|.||||+|+..+ +
T Consensus 174 ~~~g~~~iv~~Ll~~ga~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~ 250 (373)
T 2fo1_E 174 VLARRRRLVAYLMKAGADPTI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250 (373)
T ss_dssp HHHTCHHHHHHHHHTTCCSCC---CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred HHCCHHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCCH
T ss_conf 986949999999977999761---58989879999987799889999984576556732237789979999998378344
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Q ss_conf 88999999849998753358998323311056540469999999983999999987787189999970999999999844
Q 004504 386 EECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKALIGR 465 (748)
Q Consensus 386 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~ 465 (748)
.+++++|++.|++++....
T Consensus 251 ~~~v~~Ll~~g~~~~~~~~------------------------------------------------------------- 269 (373)
T 2fo1_E 251 VASAKLLVEKGAKVDYDGA------------------------------------------------------------- 269 (373)
T ss_dssp HHHHHHHHHHTCCSSCCSG-------------------------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCCC-------------------------------------------------------------
T ss_conf 9999999977997655554-------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89886446999971999999819799999999879-99766777898387799971790699999999755208988998
Q 004504 466 EELNLDYQDDNGFSAVMVAASKGHVEVFRELVYAG-ADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEFALEKGNRNAGG 544 (748)
Q Consensus 466 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g 544 (748)
...+..+..|.||||+|+..|+.+++++|++.+ ++++.++.. |
T Consensus 270 --~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~----------------------------------g 313 (373)
T 2fo1_E 270 --ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------------------------------G 313 (373)
T ss_dssp --GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------------------------------C
T ss_pred --CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC----------------------------------C
T ss_conf --4457555458889999998099999999997368986676989----------------------------------9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 53999999649999999999699999999999994989999819989999999599998
Q 004504 545 FYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVC 603 (748)
Q Consensus 545 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 603 (748)
.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|++-
T Consensus 314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 98999999868999999999769985477989999999999859888999987337345
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=313.71 Aligned_cols=274 Identities=29% Similarity=0.353 Sum_probs=167.1
Q ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99878999983999999999986999872112587645677740135403567753110135797450198999996033
Q 004504 217 DCSALVAAVVSRQVSVVQLLLQAGANTDMKVRLGAWSWDTTTGEEFRVGAGLAEPYAITWCAVEYFEITGSILRMLLQHL 296 (748)
Q Consensus 217 ~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~ 296 (748)
|.|||+.|+..|+.+++++|+++|++++..
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-------------------------------------------------- 34 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-------------------------------------------------- 34 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--------------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCC--------------------------------------------------
T ss_conf 443999999718999999999869984320--------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 89999987419999998499999999996899988986688898818999997499999999997699988889999738
Q 004504 297 SYNSPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETA 376 (748)
Q Consensus 297 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~ 376 (748)
.+..|.||||+|+..|+.+++++|++.|++++. .+..+.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 35 ---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 108 (285)
T 1wdy_A 35 ---EEEGGWTPLHNAVQMSREDIVELLLRHGADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108 (285)
T ss_dssp ---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBH
T ss_pred ---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf ---389998699999976979999999976999754---58789989999997499999999997599987658456889
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf 89999759988999999849998753358998323311056540469999999983999999987787189999970999
Q 004504 377 LMISAKYKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDI 456 (748)
Q Consensus 377 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~ 456 (748)
|++|+..++.+++++|++.|++++..+..... ....+..|.+|||.|+..++.
T Consensus 109 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~---------------------------~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKED---------------------------QERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH---------------------------HHHTTCCCCCHHHHHHHHTCH
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHH---------------------------HHHHCCCCCCHHHHHHHCCCH
T ss_conf 99999909889999999848994411044788---------------------------886602798699999983989
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999844898864469999719999998197----9999999987999766777898387799971790699999999
Q 004504 457 AALKALIGREELNLDYQDDNGFSAVMVAASKGH----VEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLE 532 (748)
Q Consensus 457 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~ 532 (748)
+++++|++..+.+++..+..|.||||+|+..++ .+++++|+++|++++.++.
T Consensus 162 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~------------------------ 217 (285)
T 1wdy_A 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE------------------------ 217 (285)
T ss_dssp HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC------------------------
T ss_conf 99999999669998754889998789999815623389999999976999988687------------------------
Q ss_pred HHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 755208988998539999996499999999996-999999999999949899998199899999995999989998
Q 004504 533 FALEKGNRNAGGFYALHCAARRGDLDAVRLLTS-RGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDIKN 607 (748)
Q Consensus 533 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d 607 (748)
.|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++||+++.+|
T Consensus 218 ----------~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 218 ----------RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp ----------TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred ----------CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf ----------798689999982999999999963699854508999839999998394999999997599998555
No 9
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=311.00 Aligned_cols=265 Identities=29% Similarity=0.367 Sum_probs=203.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87419999998499999999996899988986688898818999997499999999997699988889999738899997
Q 004504 303 YGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMISAK 382 (748)
Q Consensus 303 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~ 382 (748)
.|.++|+.|+..|+.+++++|++.|++++.. .+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 5443999999718999999999869984320--38999869999997697999999997699975458789989999997
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 59988999999849998753358998323311056540469999999983999999987787189999970999999999
Q 004504 383 YKQEECVKVLAKAGADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGDIAALKAL 462 (748)
Q Consensus 383 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L 462 (748)
.++.+++++|+++|++++..+..| .|||+.|+..++.+++++|
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g-------------------------------------~t~L~~A~~~~~~~~~~~L 124 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYG-------------------------------------FTAFMEAAVYGKVKALKFL 124 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTC-------------------------------------CBHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCC-------------------------------------CCHHHHHHHHCCHHHHHHH
T ss_conf 499999999997599987658456-------------------------------------8899999990988999999
Q ss_pred HHCCCCCCCCC----------CCCCCHHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 84489886446----------99997199999981979999999987-99976677789838779997179069999999
Q 004504 463 IGREELNLDYQ----------DDNGFSAVMVAASKGHVEVFRELVYA-GADVKLLNKSGKTAIMLSELNQNCDLFEKVML 531 (748)
Q Consensus 463 l~~~~~~~~~~----------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~ 531 (748)
++.+ .+++.. +..|.||||.|+..|+.+++++|++. |++++..+.
T Consensus 125 l~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----------------------- 180 (285)
T 1wdy_A 125 YKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN----------------------- 180 (285)
T ss_dssp HHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-----------------------
T ss_pred HHHC-CCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC-----------------------
T ss_conf 9848-9944110447888866027986999999839899999999966999875488-----------------------
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHCCC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCC
Q ss_conf 9755208988998539999996499----999999996999999999999949899998199899999995-99998999
Q 004504 532 EFALEKGNRNAGGFYALHCAARRGD----LDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLIS-NGAVCDIK 606 (748)
Q Consensus 532 ~~~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~ 606 (748)
.|.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+
T Consensus 181 -----------~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 181 -----------MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT 249 (285)
T ss_dssp -----------TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC
T ss_pred -----------CCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf -----------999878999981562338999999997699998868779868999998299999999996369985450
Q ss_pred CCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 899985899998669997414787799999999939998654468
Q 004504 607 NARGETALSLARKNSSMKNDAELVILDEVARMLVLGGGHVLKHTK 651 (748)
Q Consensus 607 d~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~L~~~ga~~~~~~~ 651 (748)
|..|.|||++|+..+.. +++++|+++|++++.+|.
T Consensus 250 ~~~g~t~l~~A~~~~~~----------~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 250 DSDGKTALLLAVELKLK----------KIAELLCKRGASTDCGDL 284 (285)
T ss_dssp CTTSCCHHHHHHHTTCH----------HHHHHHHHHSSCSCCSSC
T ss_pred CCCCCCHHHHHHHCCCH----------HHHHHHHHCCCCCCCCCC
T ss_conf 89998399999983949----------999999975999985556
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=308.80 Aligned_cols=264 Identities=19% Similarity=0.175 Sum_probs=189.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99987419999998499999999996899988986688898818999997499999999997699988889999738899
Q 004504 300 SPHYGRTLLHHAILCGCTGAVAVLLSCGADAQCPIRTQKTEFHPIHLAARLGYSTIVQSLIDSGCDLNTKTESGETALMI 379 (748)
Q Consensus 300 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~ 379 (748)
.+..|.|+||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++. ..|.||||+
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~ 90 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTI---QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHL 90 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC--CCCCCHHHH
T ss_conf 488999799999980999999999986989422---489999699999985989999999977997545--689988999
Q ss_pred HHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 9975998899999984----999875335899832331105654046999999998399999998778718999997099
Q 004504 380 SAKYKQEECVKVLAKA----GADFGLVSVSGQSASSIAGSNWWSVGFQRAVLDIIRSGNIPKSSNVAVFSPLMFVAQAGD 455 (748)
Q Consensus 380 A~~~~~~~~v~~Ll~~----g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~a~~~~~ 455 (748)
|+..++.+++++|++. |++++........ . .
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~---------------------------~-~----------------- 125 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDE---------------------------R-E----------------- 125 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC---------------------------C-C-----------------
T ss_pred HHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCH---------------------------H-H-----------------
T ss_conf 988699889999997133358777889863026---------------------------7-6-----------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC--CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999984489886446999971999999819--799999999879997667778983877999717906999999997
Q 004504 456 IAALKALIGREELNLDYQDDNGFSAVMVAASKG--HVEVFRELVYAGADVKLLNKSGKTAIMLSELNQNCDLFEKVMLEF 533 (748)
Q Consensus 456 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~ 533 (748)
......+..+..|.||||+|+..| +.+++++|+++|++++..+..|.||||+|+..++.+++++|+...
T Consensus 126 ---------~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 126 ---------VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp ---------EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred ---------HHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf ---------65403566798898789999974996699999999769997362889998999999829899999998605
Q ss_pred HH----HCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----
Q ss_conf 55----2089889985399999964999999999969999999999999498999981998999999959999899----
Q 004504 534 AL----EKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYGVNVPDGDGYTPLMLAAREGHGPMCELLISNGAVCDI---- 605 (748)
Q Consensus 534 ~~----~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~---- 605 (748)
.. +.+..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 276 (364)
T 3ljn_A 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276 (364)
T ss_dssp SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHCCC
T ss_conf 54123555232889980999999759889999999869998887999998899999838299999999748805541575
Q ss_pred --------CCCCCCCHHHHHHHCCC
Q ss_conf --------98999858999986699
Q 004504 606 --------KNARGETALSLARKNSS 622 (748)
Q Consensus 606 --------~d~~g~t~L~~a~~~~~ 622 (748)
.+..+.||++.|+..++
T Consensus 277 ~~~~~~~~~~~~~~~~l~~aa~~~~ 301 (364)
T 3ljn_A 277 YHNGTTVLPDRVVWLDFVPAAADPS 301 (364)
T ss_dssp TBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 6676423565432000124322168
Done!