Query 004505
Match_columns 748
No_of_seqs 500 out of 3762
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01862 putative voltage-gate 100.0 2.1E-76 4.6E-81 685.5 61.4 541 89-725 23-573 (574)
2 KOG0475 Cl- channel CLC-3 and 100.0 6E-66 1.3E-70 558.2 30.0 484 180-723 175-695 (696)
3 KOG0474 Cl- channel CLC-7 and 100.0 4.8E-64 1E-68 541.2 33.6 567 88-722 85-746 (762)
4 PRK01610 putative voltage-gate 100.0 2.5E-58 5.3E-63 511.4 45.2 399 89-523 3-414 (418)
5 KOG0476 Cl- channel CLC-2 and 100.0 4.3E-60 9.3E-65 518.7 22.6 503 77-631 78-648 (931)
6 cd01033 ClC_like Putative ClC 100.0 1.4E-56 3.1E-61 494.0 40.6 378 98-511 1-387 (388)
7 cd03684 ClC_3_like ClC-3-like 100.0 2.2E-56 4.9E-61 500.0 39.5 403 98-531 1-445 (445)
8 cd01031 EriC ClC chloride chan 100.0 3.5E-54 7.6E-59 478.9 40.5 391 97-523 1-401 (402)
9 PRK05277 chloride channel prot 100.0 1.7E-53 3.8E-58 477.8 42.6 401 92-525 2-416 (438)
10 COG0038 EriC Chloride channel 100.0 2.2E-52 4.8E-57 466.1 43.4 400 90-529 22-434 (443)
11 cd01034 EriC_like ClC chloride 100.0 7E-53 1.5E-57 466.1 38.9 373 102-512 1-385 (390)
12 cd03685 ClC_6_like ClC-6-like 100.0 7.1E-53 1.5E-57 473.9 37.9 394 87-531 29-459 (466)
13 cd03683 ClC_1_like ClC-1-like 100.0 1.1E-52 2.4E-57 468.2 36.0 389 91-531 2-424 (426)
14 PF00654 Voltage_CLC: Voltage 100.0 1.2E-52 2.5E-57 459.0 34.0 332 158-509 20-355 (355)
15 cd01036 ClC_euk Chloride chann 100.0 4.3E-52 9.2E-57 462.5 35.1 371 98-511 1-411 (416)
16 cd00400 Voltage_gated_ClC CLC 100.0 5.2E-51 1.1E-55 451.4 41.0 374 98-504 1-383 (383)
17 PRK03655 putative ion channel 100.0 3.8E-50 8.3E-55 443.4 39.4 388 80-506 2-396 (414)
18 cd03682 ClC_sycA_like ClC sycA 100.0 7.3E-49 1.6E-53 432.0 41.4 360 94-508 2-372 (378)
19 COG3448 CBS-domain-containing 99.8 2.9E-18 6.3E-23 172.1 19.8 140 565-727 237-376 (382)
20 PRK01862 putative voltage-gate 99.8 8E-17 1.7E-21 187.6 24.8 185 311-511 24-220 (574)
21 COG2524 Predicted transcriptio 99.7 2.4E-17 5.1E-22 163.2 12.7 124 569-723 168-291 (294)
22 cd00400 Voltage_gated_ClC CLC 99.7 1.9E-15 4.2E-20 167.6 17.5 178 319-512 1-188 (383)
23 cd01031 EriC ClC chloride chan 99.6 2.5E-15 5.3E-20 167.7 16.4 178 318-511 1-188 (402)
24 PRK05277 chloride channel prot 99.6 1.1E-14 2.4E-19 164.1 20.0 184 313-511 2-198 (438)
25 cd01034 EriC_like ClC chloride 99.6 2.7E-14 5.8E-19 158.6 19.8 179 86-294 197-385 (390)
26 COG3620 Predicted transcriptio 99.6 6.9E-15 1.5E-19 135.5 11.1 123 571-724 63-185 (187)
27 cd01033 ClC_like Putative ClC 99.6 2.9E-14 6.3E-19 157.9 17.9 176 88-292 202-386 (388)
28 PRK10892 D-arabinose 5-phospha 99.6 1.8E-14 3.9E-19 156.5 14.3 122 571-721 200-323 (326)
29 PRK11543 gutQ D-arabinose 5-ph 99.6 2.6E-14 5.6E-19 155.0 14.8 124 569-721 190-318 (321)
30 cd03682 ClC_sycA_like ClC sycA 99.5 1.6E-13 3.4E-18 151.7 18.8 176 315-511 2-181 (378)
31 cd04603 CBS_pair_KefB_assoc Th 99.5 7.8E-14 1.7E-18 126.4 12.7 109 582-720 2-110 (111)
32 cd04619 CBS_pair_6 The CBS dom 99.5 1.3E-13 2.9E-18 125.5 13.4 111 583-720 3-113 (114)
33 cd03685 ClC_6_like ClC-6-like 99.5 1.3E-13 2.7E-18 156.1 15.2 193 310-510 31-243 (466)
34 PRK07807 inosine 5-monophospha 99.5 1.1E-13 2.5E-18 155.5 14.5 127 564-724 80-206 (479)
35 PRK01610 putative voltage-gate 99.5 4.9E-13 1.1E-17 149.2 19.5 183 311-511 4-201 (418)
36 cd04617 CBS_pair_4 The CBS dom 99.5 2.2E-13 4.8E-18 124.8 13.4 111 582-720 2-117 (118)
37 cd04630 CBS_pair_17 The CBS do 99.5 5.4E-13 1.2E-17 121.3 13.9 111 582-720 2-113 (114)
38 cd04593 CBS_pair_EriC_assoc_ba 99.5 4.7E-13 1E-17 121.8 13.5 111 582-720 2-114 (115)
39 PRK15094 magnesium/cobalt effl 99.5 2.3E-13 4.9E-18 144.7 12.3 129 569-728 63-194 (292)
40 cd04641 CBS_pair_28 The CBS do 99.5 5.8E-13 1.3E-17 122.4 13.0 113 581-720 1-119 (120)
41 cd04618 CBS_pair_5 The CBS dom 99.5 4.2E-13 9.1E-18 119.2 11.6 94 582-720 2-97 (98)
42 cd04608 CBS_pair_PALP_assoc Th 99.5 3E-13 6.6E-18 125.5 11.0 113 581-721 2-123 (124)
43 cd04600 CBS_pair_HPP_assoc Thi 99.5 5.9E-13 1.3E-17 122.7 12.8 122 581-720 2-123 (124)
44 COG4109 Predicted transcriptio 99.5 2.5E-13 5.3E-18 140.2 10.9 119 572-724 187-307 (432)
45 cd04639 CBS_pair_26 The CBS do 99.5 7.6E-13 1.6E-17 119.4 12.8 109 582-720 2-110 (111)
46 cd03683 ClC_1_like ClC-1-like 99.5 6.9E-13 1.5E-17 148.7 15.3 190 313-511 3-204 (426)
47 TIGR00400 mgtE Mg2+ transporte 99.4 6.1E-13 1.3E-17 150.2 14.2 127 568-728 126-257 (449)
48 cd04607 CBS_pair_NTP_transfera 99.4 1.2E-12 2.7E-17 118.6 13.5 110 582-720 3-112 (113)
49 cd04801 CBS_pair_M50_like This 99.4 8.6E-13 1.9E-17 119.9 12.0 112 581-720 1-113 (114)
50 cd04623 CBS_pair_10 The CBS do 99.4 1.9E-12 4.1E-17 116.8 13.8 111 582-720 2-112 (113)
51 cd04631 CBS_pair_18 The CBS do 99.4 1.3E-12 2.7E-17 120.6 12.9 123 581-720 1-124 (125)
52 cd04626 CBS_pair_13 The CBS do 99.4 1.8E-12 3.8E-17 117.1 13.2 109 582-720 2-110 (111)
53 cd04624 CBS_pair_11 The CBS do 99.4 2.1E-12 4.6E-17 116.7 13.7 110 582-720 2-111 (112)
54 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 2E-12 4.3E-17 115.6 13.2 104 582-720 2-105 (106)
55 cd04605 CBS_pair_MET2_assoc Th 99.4 2.6E-12 5.7E-17 115.7 14.0 108 581-720 2-109 (110)
56 cd04615 CBS_pair_2 The CBS dom 99.4 2.1E-12 4.6E-17 116.9 13.1 111 582-720 2-112 (113)
57 COG2905 Predicted signal-trans 99.4 9.9E-13 2.2E-17 143.8 12.7 126 568-723 144-270 (610)
58 TIGR03520 GldE gliding motilit 99.4 6.6E-13 1.4E-17 147.7 11.7 128 567-727 185-315 (408)
59 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.9E-12 4.1E-17 116.5 12.5 106 581-720 2-107 (108)
60 cd04589 CBS_pair_CAP-ED_DUF294 99.4 2.8E-12 6.1E-17 115.8 13.6 109 582-720 2-110 (111)
61 COG0038 EriC Chloride channel 99.4 3.4E-12 7.5E-17 143.3 17.0 182 315-512 26-217 (443)
62 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 2.8E-12 6.1E-17 115.9 13.1 113 581-720 1-113 (114)
63 cd04621 CBS_pair_8 The CBS dom 99.4 3.1E-12 6.8E-17 120.5 13.6 121 582-720 2-134 (135)
64 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.1E-12 8.9E-17 114.0 13.7 107 581-720 2-108 (109)
65 cd04642 CBS_pair_29 The CBS do 99.4 1.7E-12 3.8E-17 120.3 11.6 122 582-720 2-125 (126)
66 cd04629 CBS_pair_16 The CBS do 99.4 2.3E-12 5E-17 116.7 12.0 112 582-720 2-113 (114)
67 cd04595 CBS_pair_DHH_polyA_Pol 99.4 4.8E-12 1E-16 114.1 14.0 108 581-720 2-109 (110)
68 cd04643 CBS_pair_30 The CBS do 99.4 3E-12 6.4E-17 116.4 12.5 114 582-720 2-115 (116)
69 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 3.4E-12 7.5E-17 115.5 12.9 111 582-720 3-113 (114)
70 TIGR00393 kpsF KpsF/GutQ famil 99.4 1.8E-12 3.9E-17 136.9 12.7 114 572-714 154-268 (268)
71 cd01036 ClC_euk Chloride chann 99.4 2.1E-12 4.5E-17 144.5 13.8 187 319-512 1-204 (416)
72 cd04588 CBS_pair_CAP-ED_DUF294 99.4 5.1E-12 1.1E-16 113.8 13.8 109 581-720 1-109 (110)
73 cd04592 CBS_pair_EriC_assoc_eu 99.4 2.5E-12 5.4E-17 121.0 12.1 132 582-713 2-133 (133)
74 cd04627 CBS_pair_14 The CBS do 99.4 3.4E-12 7.4E-17 117.7 12.8 119 582-719 2-121 (123)
75 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.7E-12 5.8E-17 144.3 14.4 123 567-724 82-204 (475)
76 cd04620 CBS_pair_7 The CBS dom 99.4 4.4E-12 9.5E-17 115.3 13.1 110 582-720 2-114 (115)
77 cd04590 CBS_pair_CorC_HlyC_ass 99.4 5.6E-12 1.2E-16 113.7 13.7 108 582-720 2-110 (111)
78 cd04803 CBS_pair_15 The CBS do 99.4 3.8E-12 8.2E-17 116.9 12.7 120 582-720 2-121 (122)
79 cd03684 ClC_3_like ClC-3-like 99.4 6.2E-12 1.3E-16 141.7 17.0 180 319-511 1-184 (445)
80 cd04586 CBS_pair_BON_assoc Thi 99.4 2.9E-12 6.3E-17 120.3 11.8 122 581-720 2-134 (135)
81 cd04800 CBS_pair_CAP-ED_DUF294 99.4 7.3E-12 1.6E-16 113.0 14.0 110 581-720 1-110 (111)
82 PRK07107 inosine 5-monophospha 99.4 2.8E-12 6E-17 145.2 13.4 120 573-722 94-219 (502)
83 cd04614 CBS_pair_1 The CBS dom 99.4 3.7E-12 8E-17 112.6 11.4 95 581-720 1-95 (96)
84 cd04640 CBS_pair_27 The CBS do 99.4 4.9E-12 1.1E-16 117.3 12.5 114 582-720 2-125 (126)
85 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 8.6E-12 1.9E-16 112.3 13.7 109 582-720 2-110 (111)
86 cd04636 CBS_pair_23 The CBS do 99.4 5.3E-12 1.1E-16 118.1 12.7 121 582-720 2-131 (132)
87 cd04625 CBS_pair_12 The CBS do 99.4 9.5E-12 2.1E-16 112.4 13.8 110 582-720 2-111 (112)
88 TIGR01137 cysta_beta cystathio 99.4 5.3E-12 1.1E-16 143.5 14.9 125 567-722 329-453 (454)
89 cd04587 CBS_pair_CAP-ED_DUF294 99.4 6.9E-12 1.5E-16 113.4 12.8 111 582-720 2-112 (113)
90 cd04622 CBS_pair_9 The CBS dom 99.4 1.1E-11 2.3E-16 112.2 13.5 111 581-720 1-112 (113)
91 cd04632 CBS_pair_19 The CBS do 99.4 7.7E-12 1.7E-16 116.1 12.8 124 582-720 2-127 (128)
92 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 9.6E-12 2.1E-16 112.0 13.0 110 581-720 1-110 (111)
93 cd04635 CBS_pair_22 The CBS do 99.4 6.5E-12 1.4E-16 115.3 11.8 121 581-720 1-121 (122)
94 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.3E-11 2.9E-16 112.8 13.3 120 582-720 2-121 (122)
95 cd04802 CBS_pair_3 The CBS dom 99.3 2E-11 4.4E-16 110.2 14.1 110 582-720 2-111 (112)
96 COG2239 MgtE Mg/Co/Ni transpor 99.3 6.6E-12 1.4E-16 139.0 13.0 128 567-728 126-258 (451)
97 cd04594 CBS_pair_EriC_assoc_ar 99.3 1.4E-11 3E-16 110.1 12.6 100 584-720 4-103 (104)
98 cd04606 CBS_pair_Mg_transporte 99.3 7.9E-12 1.7E-16 112.6 11.1 102 586-721 2-108 (109)
99 cd04602 CBS_pair_IMPDH_2 This 99.3 1.5E-11 3.2E-16 111.8 12.8 106 582-720 3-113 (114)
100 cd04609 CBS_pair_PALP_assoc2 T 99.3 1.6E-11 3.6E-16 110.1 12.6 108 582-720 2-109 (110)
101 cd04599 CBS_pair_GGDEF_assoc2 99.3 2E-11 4.3E-16 108.8 12.9 102 582-719 2-103 (105)
102 TIGR01302 IMP_dehydrog inosine 99.3 1.3E-11 2.9E-16 139.1 14.5 121 570-723 77-201 (450)
103 cd04610 CBS_pair_ParBc_assoc T 99.3 1.9E-11 4.1E-16 109.4 12.6 105 581-720 2-106 (107)
104 cd04601 CBS_pair_IMPDH This cd 99.3 1.2E-11 2.5E-16 111.2 11.4 107 581-720 2-109 (110)
105 PLN02274 inosine-5'-monophosph 99.3 2.2E-11 4.7E-16 138.2 15.6 118 576-724 103-223 (505)
106 cd04637 CBS_pair_24 The CBS do 99.3 2.1E-11 4.6E-16 112.0 12.9 120 582-720 2-121 (122)
107 COG0517 FOG: CBS domain [Gener 99.3 3E-11 6.5E-16 109.8 13.6 113 577-719 3-117 (117)
108 PRK05567 inosine 5'-monophosph 99.3 2.5E-11 5.4E-16 138.3 15.0 118 573-723 87-205 (486)
109 PTZ00314 inosine-5'-monophosph 99.3 1.9E-11 4E-16 138.7 13.6 121 570-723 92-218 (495)
110 cd04633 CBS_pair_20 The CBS do 99.3 2.9E-11 6.3E-16 110.8 12.4 119 582-720 2-120 (121)
111 PRK03655 putative ion channel 99.3 1.6E-10 3.5E-15 128.6 20.5 181 310-511 11-204 (414)
112 cd04584 CBS_pair_ACT_assoc Thi 99.3 4.5E-11 9.8E-16 109.4 13.0 119 582-720 2-120 (121)
113 PRK11573 hypothetical protein; 99.3 2.9E-11 6.4E-16 134.6 13.4 134 566-728 180-316 (413)
114 cd02205 CBS_pair The CBS domai 99.3 8.2E-11 1.8E-15 105.0 13.7 111 582-720 2-112 (113)
115 cd04591 CBS_pair_EriC_assoc_eu 99.2 6.5E-11 1.4E-15 106.4 11.9 99 582-720 3-104 (105)
116 cd04634 CBS_pair_21 The CBS do 99.2 8.1E-11 1.8E-15 111.9 13.3 121 581-720 1-142 (143)
117 cd04598 CBS_pair_GGDEF_assoc T 99.2 1.2E-10 2.7E-15 106.2 12.8 113 582-720 2-118 (119)
118 cd04638 CBS_pair_25 The CBS do 99.2 1.6E-10 3.4E-15 103.5 13.2 104 582-720 2-105 (106)
119 PRK14869 putative manganese-de 99.2 6.1E-11 1.3E-15 137.8 12.7 135 573-724 68-305 (546)
120 PF00654 Voltage_CLC: Voltage 99.1 3.7E-10 8.1E-15 124.0 13.4 140 357-512 1-145 (355)
121 COG1253 TlyC Hemolysins and re 99.1 5.8E-10 1.2E-14 125.4 12.7 133 566-729 199-334 (429)
122 COG4536 CorB Putative Mg2+ and 99.0 1.3E-09 2.8E-14 114.3 9.7 130 569-727 196-328 (423)
123 PF00571 CBS: CBS domain CBS d 98.8 1E-08 2.3E-13 81.0 7.2 55 575-629 1-55 (57)
124 COG4535 CorC Putative Mg2+ and 98.8 1.3E-08 2.8E-13 100.3 8.4 133 567-730 61-196 (293)
125 KOG1764 5'-AMP-activated prote 98.8 3.7E-08 8.1E-13 108.2 12.2 124 582-726 238-362 (381)
126 PF00571 CBS: CBS domain CBS d 98.7 2.8E-08 6E-13 78.6 6.9 56 651-723 1-56 (57)
127 TIGR01186 proV glycine betaine 98.7 1.9E-07 4.1E-12 102.3 14.5 114 578-725 247-360 (363)
128 PRK10070 glycine betaine trans 98.6 2.5E-07 5.5E-12 102.6 13.6 119 573-725 274-395 (400)
129 TIGR00400 mgtE Mg2+ transporte 98.5 8.2E-08 1.8E-12 108.7 5.2 118 572-728 194-311 (449)
130 KOG2550 IMP dehydrogenase/GMP 98.5 4.5E-07 9.7E-12 96.1 9.2 108 581-721 116-226 (503)
131 KOG0474 Cl- channel CLC-7 and 98.4 4.2E-07 9.1E-12 100.9 6.9 194 311-508 87-301 (762)
132 COG2524 Predicted transcriptio 98.2 1.9E-06 4.1E-11 86.5 6.3 60 571-630 232-291 (294)
133 COG3620 Predicted transcriptio 98.2 2.4E-06 5.2E-11 79.6 5.6 61 648-726 64-124 (187)
134 COG3448 CBS-domain-containing 98.2 1.2E-06 2.6E-11 89.4 3.7 83 620-724 221-303 (382)
135 KOG0476 Cl- channel CLC-2 and 98.1 1.7E-05 3.7E-10 90.1 12.5 174 310-490 94-276 (931)
136 PRK14869 putative manganese-de 98.1 1.9E-06 4.2E-11 100.3 3.4 134 569-720 242-390 (546)
137 cd04603 CBS_pair_KefB_assoc Th 98.1 5.6E-06 1.2E-10 74.7 5.7 55 573-627 56-110 (111)
138 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.1E-05 2.4E-10 73.3 6.6 55 573-627 58-112 (113)
139 cd04619 CBS_pair_6 The CBS dom 97.9 1.6E-05 3.5E-10 72.0 6.0 57 571-627 57-113 (114)
140 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.3E-05 1.1E-09 68.9 6.5 56 648-720 57-112 (113)
141 KOG1764 5'-AMP-activated prote 97.8 0.0001 2.2E-09 81.3 9.9 124 582-724 163-287 (381)
142 PRK05567 inosine 5'-monophosph 97.8 7.7E-05 1.7E-09 85.4 9.0 102 572-697 146-248 (486)
143 cd04620 CBS_pair_7 The CBS dom 97.7 5.2E-05 1.1E-09 68.5 6.1 56 572-627 57-114 (115)
144 cd04627 CBS_pair_14 The CBS do 97.7 6.8E-05 1.5E-09 68.7 6.6 53 574-626 69-121 (123)
145 cd04600 CBS_pair_HPP_assoc Thi 97.7 5E-05 1.1E-09 69.5 5.6 57 571-627 67-123 (124)
146 cd04607 CBS_pair_NTP_transfera 97.7 6.7E-05 1.5E-09 67.6 6.4 55 573-627 58-112 (113)
147 cd04617 CBS_pair_4 The CBS dom 97.7 5E-05 1.1E-09 69.2 5.4 57 571-627 56-117 (118)
148 PRK07807 inosine 5-monophospha 97.7 0.0002 4.3E-09 81.3 11.3 58 573-630 148-205 (479)
149 cd04585 CBS_pair_ACT_assoc2 Th 97.7 6.3E-05 1.4E-09 68.3 6.0 57 571-627 65-121 (122)
150 cd04630 CBS_pair_17 The CBS do 97.7 6.8E-05 1.5E-09 67.7 5.9 56 571-627 58-113 (114)
151 cd04615 CBS_pair_2 The CBS dom 97.7 8.5E-05 1.8E-09 66.7 6.4 58 570-627 55-112 (113)
152 cd04596 CBS_pair_DRTGG_assoc T 97.7 8.8E-05 1.9E-09 66.3 6.4 56 572-627 52-107 (108)
153 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 0.00033 7.1E-09 79.5 12.2 59 573-631 146-204 (475)
154 cd04606 CBS_pair_Mg_transporte 97.7 9.7E-05 2.1E-09 66.1 6.4 57 572-628 52-108 (109)
155 cd04625 CBS_pair_12 The CBS do 97.7 0.0001 2.2E-09 66.1 6.6 55 572-627 57-111 (112)
156 cd04641 CBS_pair_28 The CBS do 97.6 9.7E-05 2.1E-09 67.4 6.2 54 574-627 66-119 (120)
157 cd04610 CBS_pair_ParBc_assoc T 97.6 0.00011 2.5E-09 65.1 6.4 55 573-627 52-106 (107)
158 cd04604 CBS_pair_KpsF_GutQ_ass 97.6 0.00012 2.6E-09 65.7 6.3 55 573-627 59-113 (114)
159 cd04618 CBS_pair_5 The CBS dom 97.6 9.1E-05 2E-09 65.5 5.2 45 583-627 52-97 (98)
160 cd04635 CBS_pair_22 The CBS do 97.6 0.00011 2.3E-09 67.1 5.8 57 571-627 65-121 (122)
161 cd04583 CBS_pair_ABC_OpuCA_ass 97.6 0.00014 3E-09 64.8 6.1 55 573-627 54-108 (109)
162 cd04639 CBS_pair_26 The CBS do 97.6 0.00014 3E-09 65.1 6.2 55 573-627 56-110 (111)
163 PRK07107 inosine 5-monophospha 97.6 0.00022 4.7E-09 81.5 9.0 58 571-628 159-218 (502)
164 cd04611 CBS_pair_PAS_GGDEF_DUF 97.6 0.00015 3.2E-09 64.7 6.3 57 571-627 54-110 (111)
165 cd04631 CBS_pair_18 The CBS do 97.6 0.00014 3E-09 66.7 6.1 56 572-627 69-124 (125)
166 cd04803 CBS_pair_15 The CBS do 97.6 0.00013 2.9E-09 66.4 6.0 57 571-627 65-121 (122)
167 cd04593 CBS_pair_EriC_assoc_ba 97.5 0.00015 3.1E-09 65.6 6.0 56 572-627 57-114 (115)
168 cd04602 CBS_pair_IMPDH_2 This 97.5 0.00016 3.4E-09 65.4 6.2 55 573-627 57-113 (114)
169 cd04587 CBS_pair_CAP-ED_DUF294 97.5 0.00011 2.3E-09 66.0 5.0 55 573-627 58-112 (113)
170 cd04582 CBS_pair_ABC_OpuCA_ass 97.5 0.00018 3.9E-09 63.7 6.5 54 574-627 52-105 (106)
171 cd04640 CBS_pair_27 The CBS do 97.5 0.00011 2.4E-09 67.7 5.3 57 571-627 62-125 (126)
172 cd04595 CBS_pair_DHH_polyA_Pol 97.5 0.00017 3.7E-09 64.4 6.3 56 571-627 54-109 (110)
173 cd04636 CBS_pair_23 The CBS do 97.5 0.00025 5.3E-09 66.0 7.4 57 570-627 75-131 (132)
174 cd04633 CBS_pair_20 The CBS do 97.5 0.00015 3.2E-09 66.0 5.8 57 570-627 64-120 (121)
175 cd04643 CBS_pair_30 The CBS do 97.5 0.00016 3.5E-09 65.2 5.8 54 572-627 62-115 (116)
176 cd04621 CBS_pair_8 The CBS dom 97.5 0.00021 4.6E-09 67.1 6.7 55 572-627 80-134 (135)
177 cd04601 CBS_pair_IMPDH This cd 97.5 0.0002 4.2E-09 63.8 6.0 56 572-627 53-109 (110)
178 cd04623 CBS_pair_10 The CBS do 97.5 0.0002 4.4E-09 64.0 6.1 55 572-627 58-112 (113)
179 cd04629 CBS_pair_16 The CBS do 97.5 0.00015 3.2E-09 65.1 5.2 55 572-627 59-113 (114)
180 cd04586 CBS_pair_BON_assoc Thi 97.5 0.00013 2.9E-09 68.1 5.0 56 571-627 79-134 (135)
181 cd04612 CBS_pair_SpoIVFB_EriC_ 97.5 0.00027 5.9E-09 63.0 6.6 55 573-627 56-110 (111)
182 cd04800 CBS_pair_CAP-ED_DUF294 97.5 0.00023 5E-09 63.6 6.1 55 572-627 56-110 (111)
183 cd04588 CBS_pair_CAP-ED_DUF294 97.5 0.00026 5.7E-09 63.2 6.4 55 573-627 55-109 (110)
184 cd04801 CBS_pair_M50_like This 97.5 0.00015 3.2E-09 65.4 4.8 56 572-627 56-113 (114)
185 KOG0475 Cl- channel CLC-3 and 97.5 9.3E-05 2E-09 83.0 4.0 135 367-512 150-287 (696)
186 cd04613 CBS_pair_SpoIVFB_EriC_ 97.5 0.00024 5.2E-09 63.7 6.1 56 572-627 57-113 (114)
187 cd04637 CBS_pair_24 The CBS do 97.5 0.00025 5.4E-09 64.7 6.4 56 572-627 66-121 (122)
188 cd04802 CBS_pair_3 The CBS dom 97.5 0.00025 5.4E-09 63.5 6.2 56 571-627 56-111 (112)
189 cd04622 CBS_pair_9 The CBS dom 97.5 0.00025 5.3E-09 63.6 6.2 55 573-627 58-112 (113)
190 cd04626 CBS_pair_13 The CBS do 97.4 0.00025 5.5E-09 63.4 6.1 55 572-627 56-110 (111)
191 cd04605 CBS_pair_MET2_assoc Th 97.4 0.00031 6.7E-09 62.7 6.6 54 574-627 56-109 (110)
192 cd04589 CBS_pair_CAP-ED_DUF294 97.4 0.00024 5.2E-09 63.6 5.8 55 572-627 56-110 (111)
193 cd04642 CBS_pair_29 The CBS do 97.4 0.00026 5.7E-09 65.2 6.2 52 576-627 74-125 (126)
194 smart00116 CBS Domain in cysta 97.4 0.00037 8E-09 51.5 5.8 47 583-629 2-48 (49)
195 PRK10892 D-arabinose 5-phospha 97.4 0.00024 5.3E-09 77.3 6.7 58 570-628 266-323 (326)
196 PRK11543 gutQ D-arabinose 5-ph 97.4 0.00026 5.5E-09 76.9 6.9 57 572-628 262-318 (321)
197 cd04599 CBS_pair_GGDEF_assoc2 97.4 0.00032 7E-09 61.9 6.4 53 573-626 51-103 (105)
198 cd04624 CBS_pair_11 The CBS do 97.4 0.00032 7E-09 62.8 6.2 56 572-627 56-111 (112)
199 PLN02274 inosine-5'-monophosph 97.4 0.00086 1.9E-08 76.8 11.0 61 571-631 161-223 (505)
200 smart00116 CBS Domain in cysta 97.4 0.00053 1.1E-08 50.6 6.2 46 669-722 3-48 (49)
201 cd04590 CBS_pair_CorC_HlyC_ass 97.3 0.00041 8.8E-09 62.0 6.2 54 573-627 57-110 (111)
202 cd04584 CBS_pair_ACT_assoc Thi 97.3 0.00042 9.2E-09 62.9 6.2 57 570-627 64-120 (121)
203 COG0517 FOG: CBS domain [Gener 97.3 0.00048 1E-08 62.0 6.5 52 574-625 63-116 (117)
204 cd04594 CBS_pair_EriC_assoc_ar 97.3 0.00048 1E-08 61.1 6.2 53 574-627 51-103 (104)
205 cd04632 CBS_pair_19 The CBS do 97.3 0.00053 1.1E-08 63.2 6.5 58 570-627 68-127 (128)
206 cd04598 CBS_pair_GGDEF_assoc T 97.2 0.00072 1.6E-08 61.2 6.6 57 571-627 59-118 (119)
207 COG4109 Predicted transcriptio 97.2 0.00068 1.5E-08 71.3 7.0 66 567-632 243-308 (432)
208 cd04592 CBS_pair_EriC_assoc_eu 97.2 0.0011 2.4E-08 62.2 7.3 49 668-724 3-51 (133)
209 PTZ00314 inosine-5'-monophosph 97.2 0.0011 2.4E-08 75.8 8.5 58 572-629 158-217 (495)
210 cd04614 CBS_pair_1 The CBS dom 97.1 0.00097 2.1E-08 58.5 6.3 46 667-720 2-47 (96)
211 TIGR03520 GldE gliding motilit 97.1 0.00067 1.4E-08 76.0 6.2 64 646-723 188-251 (408)
212 cd04591 CBS_pair_EriC_assoc_eu 97.1 0.00083 1.8E-08 60.0 5.5 49 578-627 56-104 (105)
213 cd04608 CBS_pair_PALP_assoc Th 97.1 0.0014 3E-08 60.5 7.2 51 667-725 3-53 (124)
214 TIGR03415 ABC_choXWV_ATP choli 97.1 0.0016 3.5E-08 72.1 8.4 111 569-723 270-380 (382)
215 cd04609 CBS_pair_PALP_assoc2 T 97.0 0.001 2.2E-08 59.1 5.4 53 573-627 57-109 (110)
216 COG2239 MgtE Mg/Co/Ni transpor 97.0 0.00089 1.9E-08 75.0 5.9 63 571-633 194-256 (451)
217 cd04634 CBS_pair_21 The CBS do 97.0 0.0021 4.5E-08 60.8 7.6 56 571-627 87-142 (143)
218 cd02205 CBS_pair The CBS domai 97.0 0.0015 3.2E-08 57.6 6.2 53 575-627 60-112 (113)
219 COG2905 Predicted signal-trans 97.0 0.0012 2.6E-08 73.8 6.1 61 571-632 212-272 (610)
220 PRK15094 magnesium/cobalt effl 97.0 0.0029 6.2E-08 67.7 9.0 59 573-632 133-191 (292)
221 cd04638 CBS_pair_25 The CBS do 96.9 0.0021 4.5E-08 56.9 6.5 54 573-627 52-105 (106)
222 TIGR01302 IMP_dehydrog inosine 96.9 0.0032 7E-08 71.5 9.3 59 572-630 142-201 (450)
223 COG4175 ProV ABC-type proline/ 96.8 0.0014 3.1E-08 68.7 4.9 114 568-724 269-384 (386)
224 TIGR01137 cysta_beta cystathio 96.8 0.0024 5.3E-08 72.8 7.2 62 646-724 332-393 (454)
225 TIGR00393 kpsF KpsF/GutQ famil 96.8 0.0023 5.1E-08 67.4 6.6 58 649-723 155-213 (268)
226 PRK11573 hypothetical protein; 96.4 0.0053 1.1E-07 68.9 6.6 63 646-722 184-246 (413)
227 TIGR01186 proV glycine betaine 96.3 0.008 1.7E-07 66.2 7.0 57 574-631 303-359 (363)
228 PRK10070 glycine betaine trans 95.5 0.028 6.1E-07 62.7 7.0 59 573-632 337-395 (400)
229 COG1253 TlyC Hemolysins and re 95.4 0.025 5.4E-07 63.9 6.4 66 646-725 203-268 (429)
230 COG4535 CorC Putative Mg2+ and 94.8 0.007 1.5E-07 60.6 -0.2 97 590-724 32-128 (293)
231 KOG2550 IMP dehydrogenase/GMP 94.7 0.031 6.8E-07 60.2 4.2 57 572-628 170-226 (503)
232 KOG2118 Predicted membrane pro 94.2 0.089 1.9E-06 60.2 6.8 135 565-729 196-334 (498)
233 COG1125 OpuBA ABC-type proline 91.4 0.65 1.4E-05 47.9 7.5 121 580-721 186-308 (309)
234 COG4536 CorB Putative Mg2+ and 91.0 1.1 2.4E-05 48.4 9.0 50 582-631 276-325 (423)
235 TIGR03415 ABC_choXWV_ATP choli 89.8 0.62 1.4E-05 51.7 6.4 54 574-630 327-380 (382)
236 COG4175 ProV ABC-type proline/ 83.3 2.2 4.8E-05 45.5 5.7 53 578-631 332-384 (386)
237 PRK09765 PTS system 2-O-a-mann 82.9 29 0.00062 41.4 15.6 45 236-292 526-572 (631)
238 COG1125 OpuBA ABC-type proline 81.0 2.7 5.9E-05 43.5 5.3 61 568-628 244-308 (309)
239 PRK10478 putative PTS system f 58.8 2.4E+02 0.0053 31.1 14.4 15 143-157 135-149 (359)
240 TIGR01996 PTS-II-BC-sucr PTS s 45.5 5.2E+02 0.011 29.6 18.2 40 211-259 351-391 (461)
241 PRK12438 hypothetical protein; 44.7 7.4E+02 0.016 31.2 21.1 21 106-126 31-51 (991)
242 TIGR01992 PTS-IIBC-Tre PTS sys 42.0 5.8E+02 0.013 29.2 19.0 40 211-259 352-392 (462)
243 COG4214 XylH ABC-type xylose t 40.8 5.3E+02 0.012 28.4 16.1 51 279-330 251-309 (394)
244 PF03699 UPF0182: Uncharacteri 40.7 7.7E+02 0.017 30.2 20.4 23 103-125 15-37 (774)
245 PRK11404 putative PTS system 40.5 6.3E+02 0.014 29.1 18.1 45 236-292 373-419 (482)
246 COG2205 KdpD Osmosensitive K+ 39.2 2E+02 0.0043 35.1 10.4 79 246-331 419-497 (890)
247 TIGR02865 spore_II_E stage II 37.0 8.8E+02 0.019 29.8 20.6 29 310-338 113-141 (764)
248 PF01102 Glycophorin_A: Glycop 36.3 48 0.001 30.5 3.9 17 313-329 66-82 (122)
249 PRK10712 PTS system fructose-s 36.2 7.8E+02 0.017 29.0 18.2 28 227-259 456-484 (563)
250 PRK11007 PTS system trehalose( 35.1 7.5E+02 0.016 28.4 17.1 31 211-248 352-382 (473)
251 PRK10490 sensor protein KdpD; 34.5 2.6E+02 0.0057 35.0 11.3 55 276-331 446-500 (895)
252 PRK11388 DNA-binding transcrip 33.9 52 0.0011 39.3 4.9 118 575-714 43-162 (638)
253 COG2216 KdpB High-affinity K+ 28.2 97 0.0021 35.5 5.3 39 674-721 412-450 (681)
254 COG3329 Predicted permease [Ge 27.8 7.9E+02 0.017 26.5 11.7 79 422-508 71-156 (372)
255 PF06738 DUF1212: Protein of u 27.0 3.4E+02 0.0074 26.7 8.8 18 350-367 151-168 (193)
256 PF13303 PTS_EIIC_2: Phosphotr 27.0 8.5E+02 0.018 26.5 14.9 26 486-511 236-261 (327)
257 cd02958 UAS UAS family; UAS is 26.6 1.4E+02 0.003 26.6 5.3 65 567-631 37-109 (114)
258 PRK11677 hypothetical protein; 26.4 69 0.0015 30.0 3.3 21 88-108 3-23 (134)
259 TIGR02002 PTS-II-BC-glcB PTS s 24.9 1.1E+03 0.024 27.2 18.4 36 212-247 281-316 (502)
260 PRK10535 macrolide transporter 24.6 3.4E+02 0.0074 32.5 9.7 67 88-166 570-636 (648)
261 COG5336 Uncharacterized protei 24.4 62 0.0013 29.0 2.4 20 308-327 73-92 (116)
262 smart00594 UAS UAS domain. 23.9 1E+02 0.0023 28.0 4.0 63 566-628 46-120 (122)
263 PF13807 GNVR: G-rich domain o 23.7 1.1E+02 0.0023 25.8 3.8 27 84-110 55-81 (82)
264 PF10749 DUF2534: Protein of u 23.6 2.9E+02 0.0062 23.5 5.9 62 268-333 10-72 (85)
265 PRK01030 tetrahydromethanopter 23.4 8.7E+02 0.019 25.4 11.6 17 316-332 13-29 (264)
266 COG5336 Uncharacterized protei 23.0 1.4E+02 0.0031 26.8 4.3 37 210-246 56-92 (116)
267 KOG3764 Vesicular amine transp 22.8 6.5E+02 0.014 28.5 10.3 40 219-258 183-222 (464)
268 PF13493 DUF4118: Domain of un 20.8 1.4E+02 0.0029 26.2 4.0 50 278-327 49-100 (105)
No 1
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.1e-76 Score=685.51 Aligned_cols=541 Identities=26% Similarity=0.424 Sum_probs=450.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHH--------
Q 004505 89 ALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGL-------- 160 (748)
Q Consensus 89 ~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~g~-------- 160 (748)
.+++.++++|+++|+++++|+.++++.++++|...+. +.. .....||++.+++|++||+++|+++.+
T Consensus 23 ~~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~ 97 (574)
T PRK01862 23 TMLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGS----FVE-MAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKG 97 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch----HHH-HhhcccHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 4778999999999999999999999999998864321 111 112246776788999999999887432
Q ss_pred --HHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHHhh
Q 004505 161 --LEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAG 238 (748)
Q Consensus 161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~g 238 (748)
++++..++... ..+..+....|++++++++++|+|+|||||++|+|+++|++++++++.++++++.+++||
T Consensus 98 g~~~~~~~~~~~~-------~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~~~~~~r~l~~~G 170 (574)
T PRK01862 98 GKTDYMEAVALGD-------GVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVACG 170 (574)
T ss_pred CcHHHHHHHHcCC-------CCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 23333333211 112234455799999999999999999999999999999999999998888888899999
Q ss_pred hHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHH
Q 004505 239 AASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLIL 318 (748)
Q Consensus 239 ~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~l 318 (748)
+|||+||+||||++|++|++|++.++++.+. .++++++|++|+.+++.++|.++.|.+|.++.+++.++++++++
T Consensus 171 ~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l 245 (574)
T PRK01862 171 AAAGITSAYNAPIAGAFFVAEIVLGSIAMES-----FGPLVVASVVANIVMREFAGYQPPYEMPVFPAVTGWEVLLFVAL 245 (574)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHhhhccHHH-----HHHHHHHHHHHHHHHHHHcCCCceeeCCCcCcCCHHHHHHHHHH
Confidence 9999999999999999999999987776544 45688999999999999999999999887766778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCchHHHH
Q 004505 319 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLL 398 (748)
Q Consensus 319 Gi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~l 398 (748)
|++||++|.+|++++.+++++++++ +.+++++++++|+++|++.+++|+.+|+|+..+++++++. ..+..+
T Consensus 246 Gv~~G~~~~~f~~~~~~~~~~~~~~----~~~~~~~~~~~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~-----~~~~~l 316 (574)
T PRK01862 246 GVLCGAAAPQFLRLLDASKNQFKRL----PVPLPVRLALGGLLVGVISVWVPEVWGNGYSVVNTILHAP-----WTWQAL 316 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCC-----chHHHH
Confidence 9999999999999999988876532 3455678899999999999999999999999998887643 234556
Q ss_pred HHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHH
Q 004505 399 TQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLT 478 (748)
Q Consensus 399 ~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt 478 (748)
+.++++|+++|++|+|+|+|||+|+|++++||++|+++|.++..+ +|.. ...|..|+++||+|++++++|+|+|
T Consensus 317 ~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~----~~~~--~~~~~~~a~vGmaa~~aa~~~aPlt 390 (574)
T PRK01862 317 VAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHAL----WPGH--TSAPFAYAMVGMGAFLAGATQAPLM 390 (574)
T ss_pred HHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHh----CCCc--ccchHHHHHHHHHHHHHHHHccHHH
Confidence 677889999999999999999999999999999999999877542 4432 1357889999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhhcCCCCCCCccchhhhhhhccCCCcchhhhhhhc
Q 004505 479 SVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVEN 558 (748)
Q Consensus 479 ~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~e~~~r~~~~~~~~~L~~l~~ 558 (748)
++++++|+|++++.++|+|+++++|+++++.+.+ .++|+..++.++.+
T Consensus 391 ~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~---~~iy~~~~~~~~~~----------------------------- 438 (574)
T PRK01862 391 AILMIFEMTLSYQVVLPLMVSCVVAYFTARALGT---TSMYEITLRRHQDE----------------------------- 438 (574)
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHhcccc-----------------------------
Confidence 9999999999999999999999999999998853 34555554433211
Q ss_pred ccchhHHHHhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCC
Q 004505 559 AADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK 638 (748)
Q Consensus 559 ~~~~~~~~~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~ 638 (748)
.+...++.++|+|+|++++.++++++++.|+.+.|.+++.+.+||+|++++++|+|+.+|+.+.+.++..
T Consensus 439 ------~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~---- 508 (574)
T PRK01862 439 ------AERERLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD---- 508 (574)
T ss_pred ------chhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----
Confidence 1234588899999999999999999999999999999999999999999999999999999886433211
Q ss_pred CCCccccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHH
Q 004505 639 GDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSI 718 (748)
Q Consensus 639 ~~~~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dl 718 (748)
..+.+++|+|++++ .++++|+++.|++++|.+++.+.+||+|++ ++++++|+||++|+
T Consensus 509 -------~~~~~v~dim~~~~---------~~v~~d~~L~~al~~m~~~~~~~lpVVd~~------~~~~liGvIt~~DI 566 (574)
T PRK01862 509 -------TTDKTAADYAHTPF---------PLLTPDMPLGDALEHFMAFQGERLPVVESE------ASPTLAGVVYKTSL 566 (574)
T ss_pred -------cccchHHHhccCCC---------eeECCCCCHHHHHHHHHhcCCCeeeeEeCC------CCCeEEEEEEHHHH
Confidence 12457889998877 899999999999999999999999999961 12589999999999
Q ss_pred HHHHHHH
Q 004505 719 WNCLREE 725 (748)
Q Consensus 719 l~~l~~~ 725 (748)
++.+.+.
T Consensus 567 l~~l~~~ 573 (574)
T PRK01862 567 LDAYRRM 573 (574)
T ss_pred HHHHHhh
Confidence 9998753
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-66 Score=558.24 Aligned_cols=484 Identities=25% Similarity=0.335 Sum_probs=383.4
Q ss_pred cccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHhhhHhhhhhhcccchhhHHH
Q 004505 180 LVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKIALVAAGAASGIASGFNAAVAGCFF 256 (748)
Q Consensus 180 ~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~---~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf 256 (748)
|...+++.+|.++..+++++|+|+|||||+||++.+||+.++++|+ .+..++|+++++++|||+|++||||+||++|
T Consensus 175 ~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlF 254 (696)
T KOG0475|consen 175 FLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLF 254 (696)
T ss_pred hhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeee
Confidence 6667888999999999999999999999999999999999999987 4566777899999999999999999999999
Q ss_pred HHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhc---CCcceeecccCC-CCccchHHHHHHHHHHHHHHHHHHHHH
Q 004505 257 AIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL---GTQSAFTVPSYD-LKSAAELPLYLILGMLCGVVSVVFTRL 332 (748)
Q Consensus 257 ~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~---g~~~~~~~~~~~-~~~~~~l~~~i~lGi~~Gl~g~~f~~~ 332 (748)
++|++..++..+ +.|..+.++.+|..+.+.+. +.++.+..+.|+ .|+..|+++|+++|++||+.|.+|.|+
T Consensus 255 slEev~~~fp~k-----tlw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~ 329 (696)
T KOG0475|consen 255 SLEEVSYYFPLK-----TLWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRL 329 (696)
T ss_pred ehhhhhhcCCcc-----chHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHH
Confidence 999998544433 35667788888888888753 233433333444 467899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCc---------hHHHHHHHHH
Q 004505 333 VAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAP---------GIWLLTQLAA 403 (748)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~---------~~~~l~~~~~ 403 (748)
+.++.++++.. +...++++.+.+.+++++++++..|++..+++..+.++++.-...+.. ..|.|+...+
T Consensus 330 n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i 407 (696)
T KOG0475|consen 330 NIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALI 407 (696)
T ss_pred HHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHH
Confidence 99998877644 244556677888999999999999999999999998888764322212 2677888899
Q ss_pred HHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCC----CCCCcchHHHHHHHHHHHHHHhccchHHH
Q 004505 404 AKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG----NVAVAEPQAYALVGMAATLASVCSVPLTS 479 (748)
Q Consensus 404 ~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~----~~~~~~~~~~a~~GaaA~la~~~~aPlt~ 479 (748)
+|+++|..|+|++.|+|+|.|++++||+.|+++|.+..++++. |+ ...++.|+.||++||||.++|+||.|+|.
T Consensus 408 ~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~--~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtl 485 (696)
T KOG0475|consen 408 LKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN--PDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTL 485 (696)
T ss_pred HHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC--CCccccchhhcCchHHHHHHHHHHhcCcceeeEEE
Confidence 9999999999999999999999999999999999776655442 21 13568999999999999999999999999
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhhcCCCCCCCccchhhhhhhccCCCcchhhhhhhcc
Q 004505 480 VLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENA 559 (748)
Q Consensus 480 ~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~e~~~r~~~~~~~~~L~~l~~~ 559 (748)
+||+||+||++++++|+|+++++++|+++.+.+ .++||..++.+|||++.. ++|-. ..+
T Consensus 486 VVImFELTG~l~~IlPlm~av~~SkwI~d~~gk---~gIyda~I~~ng~P~l~~---k~e~~------------~t~--- 544 (696)
T KOG0475|consen 486 VVIMFELTGALNYILPLMLAVMISKWIGDGLGK---TGIYDAHIELNGYPFLDS---KSEFS------------STL--- 544 (696)
T ss_pred EEEeeeccCcceeHHHHHHHHHHHHHHHhcccc---chHHHHHHHhcCCCCccc---ccccc------------cch---
Confidence 999999999999999999999999999999865 349999999999998832 11100 000
Q ss_pred cchhHHHHhhhhhhhhhhccccC--ceEecC-CCCHHHHHHHHHcCCCCEEEEEeCC--CcEEEEEeHHHHHHHHhcccC
Q 004505 560 ADSEAAEEMLLEELKVSRAMSKD--FVKVAL-TVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKRCLSKLSS 634 (748)
Q Consensus 560 ~~~~~~~~~~L~~l~V~diM~~~--~~~v~~-~~tv~eal~~m~~~~~~~lpVVd~~--g~lvGiVt~~DL~~~l~~~~~ 634 (748)
+..+.+.+..+ ..++.. +++++|...+|+++.++.+|||-++ .+++|+|.++|+...+.....
T Consensus 545 ------------~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~ 612 (696)
T KOG0475|consen 545 ------------AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARK 612 (696)
T ss_pred ------------hhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcc
Confidence 11122222222 444444 4999999999999999999988543 589999999999877553221
Q ss_pred CC--C--CCC-----C---ccccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhh
Q 004505 635 DN--S--KGD-----S---IASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQ 702 (748)
Q Consensus 635 ~~--~--~~~-----~---~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~ 702 (748)
.. . +.. . ..........+++|...+ .++..+++.+.+++++++-+++++.|.+
T Consensus 613 ~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~tp---------~tv~d~tp~~~v~~~F~~lg~~~~~v~~------ 677 (696)
T KOG0475|consen 613 IQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMTP---------FTVTDLTPMETVVDLFRKLGLRQILVTK------ 677 (696)
T ss_pred ccccceecccccCCCCccccCCCCCCcCceeeccCCc---------ccccccCcHHHHHHHHHhhCceEEEEcc------
Confidence 10 0 000 0 000112234566665554 8999999999999999999999999887
Q ss_pred ccCCCeEEEEEEHhHHHHHHH
Q 004505 703 RRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 703 ~~~~g~lvGIIt~~Dll~~l~ 723 (748)
+|++.|+||++|+++..+
T Consensus 678 ---~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 678 ---NGILLGIITKKDCLRHTR 695 (696)
T ss_pred ---CCeeEeeeehHHHHHhhc
Confidence 799999999999988654
No 3
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-64 Score=541.18 Aligned_cols=567 Identities=23% Similarity=0.293 Sum_probs=416.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhh--hchhHHHH----HHHHHHHHHHHHHH----
Q 004505 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQR--LADTWHRI----LLIPVTGGVIVGMM---- 157 (748)
Q Consensus 88 ~~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~l~p~~ggl~vg~~---- 157 (748)
..-|.+++++|+++|+++.+.+..++.+..+.+......-... ..++ +..+...+ +.+..++.+++..+
T Consensus 85 ~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~-~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~A 163 (762)
T KOG0474|consen 85 AVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEEC-RSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVA 163 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh-hhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhc
Confidence 3456789999999999999999999887776543221100000 0000 00111111 11223344444333
Q ss_pred --HHHHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHh-------------
Q 004505 158 --HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL------------- 222 (748)
Q Consensus 158 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~------------- 222 (748)
+|+||+..+++|-.+|. ..+.++++.|+++.+.++++|+.+|||||++|.|+++|+.+++
T Consensus 164 AGSGIPevK~YLNGV~iP~-----ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~f 238 (762)
T KOG0474|consen 164 AGSGIPEVKCYLNGVKIPG-----IVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWF 238 (762)
T ss_pred cCCCCchhhhhhcCccCcc-----eeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhh
Confidence 57788888877765443 3456788899999999999999999999999999999998873
Q ss_pred -hhccCHHHHHHHHHhhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhh-----cCCc
Q 004505 223 -MMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL-----LGTQ 296 (748)
Q Consensus 223 -~~~~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----~g~~ 296 (748)
+|++++++| .++.||+|||+||+|+||++|++|++|+.+..|+. ..+|.+++++.++.++.+.+ .|.-
T Consensus 239 r~FrnDrdrR-D~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq-----~L~WR~fFss~i~~f~l~~~i~~~~~G~~ 312 (762)
T KOG0474|consen 239 RYFRNDRDRR-DLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQ-----ALLWRTFFSSAIVAFVLRAFILSCLSGKC 312 (762)
T ss_pred hhhcccchhh-hhhhcchHHhHHHHhCCCccceEEEechhhHHHHh-----hHHHHHHHHhHHHHHhHHHHHHHHhcCch
Confidence 466778766 58999999999999999999999999998876643 45677888888888888842 2322
Q ss_pred ce--------eecccCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHh
Q 004505 297 SA--------FTVPSYD-LKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIAL 367 (748)
Q Consensus 297 ~~--------~~~~~~~-~~~~~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~ 367 (748)
.. |.+.+.+ .++.+|++.++++|+++|++|++||.++.+...++.+ ..+.+..+++...+..++++++++
T Consensus 313 g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af 391 (762)
T KOG0474|consen 313 GLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAF 391 (762)
T ss_pred hccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHh
Confidence 22 2222222 3568899999999999999999999997777666543 222223333334444444444443
Q ss_pred hcccc-----------------cc--cC-hhh------------HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhcc
Q 004505 368 RYPGI-----------------LY--WG-FTN------------VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGS 415 (748)
Q Consensus 368 ~~p~~-----------------~g--~G-~~~------------i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gs 415 (748)
..|.+ +. .| |+. +.+++|... ..+++..|+++++..++++.+|+|.
T Consensus 392 ~l~~l~~C~P~~~~~~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~--~ef~~~tL~iFfv~yf~L~~~TfGi 469 (762)
T KOG0474|consen 392 GLPFLADCQPCPPSITEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPT--NEFGILTLAIFFVLYFFLACWTFGI 469 (762)
T ss_pred hhHHHhcCCCCCCCcccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCC--CccchhHHHHHHHHHHHHHHHHhcc
Confidence 33310 00 11 222 334444321 3466778889999999999999999
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhcCchhHHH
Q 004505 416 GLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLP 495 (748)
Q Consensus 416 G~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~~~llP 495 (748)
..|.|.|.|++.+||+.|+++|.+++... .++|+.||++||||+++|++|++++.+||++|.| +..+++|
T Consensus 470 ~vpsGlFiP~iL~GAa~GRlvg~~l~~~~---------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lP 539 (762)
T KOG0474|consen 470 AVPSGLFIPVILTGAAYGRLVGMLLGSYT---------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLP 539 (762)
T ss_pred cccccchhHHHHhhHHHHHHHHHHHHHhh---------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhH
Confidence 99999999999999999999999887643 2689999999999999999999999999999999 6678999
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhhHhhhcCCCCCCCccchhhhhhhccCCCcchhhhhhhcccchhHHHHhhhhhhhh
Q 004505 496 LMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKV 575 (748)
Q Consensus 496 ~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~e~~~r~~~~~~~~~L~~l~~~~~~~~~~~~~L~~l~V 575 (748)
+|++.++|+||++.+|+ ++||.++..+|.|++. |. .+..++++++
T Consensus 540 iMlvLliaK~VGD~FNe----giYd~~i~LkgvP~Le---------~~----------------------pe~~mr~L~a 584 (762)
T KOG0474|consen 540 IMLVLLIAKTVGDSFNE----GIYDIIIQLKGVPFLE---------WE----------------------PEPYMRNLTA 584 (762)
T ss_pred HHHHHHHHHHHHhhhhh----hhHHHhhhccCCcccc---------CC----------------------CchHhhhhhH
Confidence 99999999999999985 6899999999998871 11 1335788999
Q ss_pred hhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-----CcEEEEEeHHHHHHHHhcccCCCC---CCCC------
Q 004505 576 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-----DFLEGILTYGDIKRCLSKLSSDNS---KGDS------ 641 (748)
Q Consensus 576 ~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-----g~lvGiVt~~DL~~~l~~~~~~~~---~~~~------ 641 (748)
+|+|++++++++.-+.+....+.++++.|+.+||||+. +++.|+|-+.++...++++..... ..+.
T Consensus 585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~ 664 (762)
T KOG0474|consen 585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKF 664 (762)
T ss_pred hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcC
Confidence 99999999999999999999999999999999999973 478999999999987765443211 0000
Q ss_pred --ccccccchhhhhhhhc------Cccc-cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEE
Q 004505 642 --IASDVNTCLVSSICTR------GISY-RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAI 712 (748)
Q Consensus 642 --~~~~~~~~~V~dim~~------~~~~-~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGI 712 (748)
.....+..+++|+-.. -.++ ..++..+.+|++++++..+..+|++-+.+++.||++ .++++|+
T Consensus 665 ~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--------~~~~~gi 736 (762)
T KOG0474|consen 665 TFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--------TNRVVGI 736 (762)
T ss_pred CHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--------CCceeEE
Confidence 0000112223332111 1111 124556799999999999999999999999999996 6788999
Q ss_pred EEHhHHHHHH
Q 004505 713 LHYDSIWNCL 722 (748)
Q Consensus 713 It~~Dll~~l 722 (748)
+|++|+...-
T Consensus 737 lTR~D~~~~~ 746 (762)
T KOG0474|consen 737 LTRKDLARYR 746 (762)
T ss_pred EehhhhhhHH
Confidence 9999987543
No 4
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.5e-58 Score=511.37 Aligned_cols=399 Identities=24% Similarity=0.392 Sum_probs=325.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHH----------
Q 004505 89 ALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---------- 158 (748)
Q Consensus 89 ~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~---------- 158 (748)
+.+++++++|+++|+++++|++++++++++.+.....+ +....+.. +||+.+++|++||+++|+++
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~l~p~~ggll~g~~~~~~~~~~~~~ 78 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGS---LVNAATNL-SPWRRLLTPALGGLAAGLLLWGWQKFTQQR 78 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---hhhccccc-chHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 34677899999999999999999999977554332211 11101122 34456889999999998863
Q ss_pred --HHHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHH
Q 004505 159 --GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVA 236 (748)
Q Consensus 159 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~ 236 (748)
|.+++++.++.. ..+..+....|++++++++++|+|+|||||++|+|++++++++++++ ++++||.+++
T Consensus 79 ~~g~~~vi~av~~~--------g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~-~~~~~r~li~ 149 (418)
T PRK01610 79 PHAPTDYMEALQTD--------GQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT-PRQEWKLWIA 149 (418)
T ss_pred CCCcHHHHHHHHcC--------CCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC-ChHHHHHHHH
Confidence 234455555431 11223455689999999999999999999999999999999999999 4566778999
Q ss_pred hhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCc-ceeecccCCCCccchHHHH
Q 004505 237 AGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQ-SAFTVPSYDLKSAAELPLY 315 (748)
Q Consensus 237 ~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~-~~~~~~~~~~~~~~~l~~~ 315 (748)
||+|||+||+||||++|++|++|++.++++.+. ..++++++++++.+++.++|.+ +.|.++....+++.+++++
T Consensus 150 ~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~-----~~p~~ias~~a~~v~~~~~g~~~~~~~i~~~~~~~~~~l~~~ 224 (418)
T PRK01610 150 CGAAAGMASAYHAPLAGSLFIAEILFGTLMLAS-----LGPVVISAVVALLTTNLLNGSDALLYNVQLSVTVQARDYALI 224 (418)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHcCCCCCeeecCCcCCCCHHHHHHH
Confidence 999999999999999999999999987665433 4568899999999999988854 6688876655678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCchH
Q 004505 316 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 395 (748)
Q Consensus 316 i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~~ 395 (748)
+++|++||++|.+|++++++.++++++. +.++++++.++|+++|++.+++|+++++|++.++..++.. +..
T Consensus 225 i~lGii~Gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~lggli~g~l~~~~p~~~G~G~~~i~~~~~~~-----~~~ 295 (418)
T PRK01610 225 ISTGLLAGLCGPLLLTLMNASHRGFVSL----KLAPPWQLALGGLIVGLLSLFTPAVWGNGYSVVQSFLTAP-----PLL 295 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc----ccchhHHHHHHHHHHHHHHHHhhHHhCCcHHHHHHHHcCC-----hhH
Confidence 9999999999999999999888776533 3456688999999999999999999999999888776432 334
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccc
Q 004505 396 WLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 475 (748)
Q Consensus 396 ~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~a 475 (748)
..++.+++.|+++|++|+|+|++||+|+|++++||++|.++|.++.. .+|.. ...+..|+++||+|++++++|+
T Consensus 296 ~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~----~~~~~--~~~~~~~a~vGmaA~laa~~~a 369 (418)
T PRK01610 296 MLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGL----WLPDG--EEITLLLGLTGMATLLAATTHA 369 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH----hCCCc--ccchHHHHHHHHHHHHHHHHcc
Confidence 55666789999999999999999999999999999999999987753 34532 1347899999999999999999
Q ss_pred hHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHh
Q 004505 476 PLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRT 523 (748)
Q Consensus 476 Plt~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~ 523 (748)
|+|++++++|+||+++.++|+|+++++|+++++.+.+ .++|+.++
T Consensus 370 Pltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~---~siy~~~~ 414 (418)
T PRK01610 370 PIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRR---DSIYRQHT 414 (418)
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCC---CCchHHHH
Confidence 9999999999999999999999999999999998854 34565554
No 5
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-60 Score=518.67 Aligned_cols=503 Identities=22% Similarity=0.277 Sum_probs=374.5
Q ss_pred hhhhccCCChhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCccchhHHHhhhhchhHHHHHHHHHH
Q 004505 77 RDSLTESAPPEWA----LLLIGCLLGLASGLCVAFFNKGVHIIHEW---AWAGTPNEGAAWLRLQRLADTWHRILLIPVT 149 (748)
Q Consensus 77 ~~~~~~~~~~~~~----l~l~~iliG~~~Gl~~~~f~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 149 (748)
+++++|+..+-|+ .|.+.+++|++++++++.+++.+..+++. ++....... .+ ..|..|...|+.
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~-~y-------l~yl~Wv~y~v~ 149 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSH-SY-------LAYLSWVGYPVG 149 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hH-------HHHHHHHHHHHH
Confidence 4556665444444 46788999999999999999999886663 222211110 00 112122333332
Q ss_pred HHHH-HHHHHHHHHHHHHhhcCCcccccC-------cccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHH
Q 004505 150 GGVI-VGMMHGLLEILNQIKQSSSLDRQG-------FDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS 221 (748)
Q Consensus 150 ggl~-vg~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~ 221 (748)
--++ .++.+ .+-+|.-|+|+|+.+. .+|+..++++.|.++..+++|+|+++|+|||+|||++.+++.++
T Consensus 150 Li~fSA~f~h---~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~ 226 (931)
T KOG0476|consen 150 LVLFSAGFCH---YIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLS 226 (931)
T ss_pred HHHHHHHHHh---eeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHH
Confidence 1111 12221 1223444444444332 38888899999999999999999999999999999999999999
Q ss_pred hhhc-------cCHHHHHHHHHhhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhc-
Q 004505 222 LMME-------NNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL- 293 (748)
Q Consensus 222 ~~~~-------~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~- 293 (748)
+... .|..++..|+++|||.|+|+.|.||++|+||++|+++.+|.++|+|. -++|+.+++++.|++.
T Consensus 227 k~~a~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWR-----GFFAAtcsA~vFR~lav 301 (931)
T KOG0476|consen 227 KVTACQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWR-----GFFAATCSAFVFRLLAV 301 (931)
T ss_pred HHHHhhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHH-----HHHHHHhHHHHHHHHHH
Confidence 8754 56778888999999999999999999999999999999999999764 6788888999998753
Q ss_pred --C-Cc---ceeecccC--C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcCCchhHHHhhhHHH
Q 004505 294 --G-TQ---SAFTVPSY--D-LKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKS---FDFIKEKFGLPPVVCPALGGLG 361 (748)
Q Consensus 294 --g-~~---~~~~~~~~--~-~~~~~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~gl~ 361 (748)
- .+ .++..++| + .+..+|+|+|+++|++||++|++|.++.+.+.-+ .+..++-+...+.+.+++..++
T Consensus 302 f~v~~~~tItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v 381 (931)
T KOG0476|consen 302 FFVEAEVTITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALV 381 (931)
T ss_pred HcccchhhhHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHH
Confidence 2 11 12222222 2 4578999999999999999999998876543221 1222222333445677776666
Q ss_pred HHHHHhhccccccc---Ch----hhHHHHHhcCCC-----------------CCCc-----hHHHHHHHHHHHHHHHHHh
Q 004505 362 AGIIALRYPGILYW---GF----TNVEEILHTGKT-----------------ASAP-----GIWLLTQLAAAKVVATALC 412 (748)
Q Consensus 362 ~g~~~~~~p~~~g~---G~----~~i~~~l~~~~~-----------------~~~~-----~~~~l~~~~~~K~~~t~lt 412 (748)
++. +.||.-+|. |. +++.+++.|-.- |..+ ....|++++++||++.++|
T Consensus 382 ~ss--ltfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia 459 (931)
T KOG0476|consen 382 FSS--LTFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIA 459 (931)
T ss_pred Hhh--eecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHH
Confidence 433 457766553 21 345556654210 1111 1345788899999999999
Q ss_pred hccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCC--CCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhcCc
Q 004505 413 KGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIP--GNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY 490 (748)
Q Consensus 413 ~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p--~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~ 490 (748)
.....|.|.|+|.++|||++|+++|+.+..++...+- +....+.|+.||++|||||.+++|+ +++.+||+||+||+.
T Consensus 460 ~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTH-TvSvAVIifElTGQl 538 (931)
T KOG0476|consen 460 TTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVTH-TVSVAVIIFELTGQL 538 (931)
T ss_pred hccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhccceee-eeeEEEEEEeeccch
Confidence 9999999999999999999999999987665543332 2234688999999999999999999 699999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhhcCCCCCCCccchhhhhhhccCCCcchhhhhhhcccchhHHHHhhh
Q 004505 491 RILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLL 570 (748)
Q Consensus 491 ~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~e~~~r~~~~~~~~~L~~l~~~~~~~~~~~~~L 570 (748)
.+++|+|+|+++|++|+..++ .++||..+..++||++-+. .|. +...
T Consensus 539 ~hiLPVmIAVllaNAVa~~LQ----PSiYDSII~IKklPYLPDl------pps-----------------------~~~~ 585 (931)
T KOG0476|consen 539 CHILPVMIAVLLANAVAASLQ----PSIYDSIIRIKKLPYLPDL------PPS-----------------------RSSV 585 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----cchhhheeeeccCCcCCCC------CCc-----------------------ccce
Confidence 999999999999999999996 5789999999999988221 121 1235
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCC--cEEEEEeHHHHHHHHhc
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED--FLEGILTYGDIKRCLSK 631 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g--~lvGiVt~~DL~~~l~~ 631 (748)
..++|+|+|.+++..+..++|.+|..+.++.+..+.+|+||+.+ .++|.|.++.|...++.
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 56889999999999999999999999999988799999999754 78999999999876543
No 6
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.4e-56 Score=494.00 Aligned_cols=378 Identities=29% Similarity=0.359 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhc
Q 004505 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG--------LLEILNQIKQ 169 (748)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~g--------~~~~~~~~~~ 169 (748)
|+++|+++..|+..+++.+++.+....++... .....+||+.+++|++||+++++++. +++++..+++
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~~g~gi~~v~~~~~~ 76 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLT----GVAAVSPIRRALSLTVGGLIAGLGWYLLRRKGKKLVSIKQAVRG 76 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchh----hhccCChHHHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhcC
Confidence 67899999999999999999987654322111 11223556678899999999998743 3344444432
Q ss_pred CCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhhccc
Q 004505 170 SSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNA 249 (748)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~f~a 249 (748)
. +.+..+..+.|.+++++++++|+|+|||||++|+|++++++++++++.++.+|+.+++||+|||+||+|||
T Consensus 77 ~--------~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~a 148 (388)
T cd01033 77 K--------KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGLTVADRRLLVACAAGAGLAAVYNV 148 (388)
T ss_pred C--------CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 12223444579999999999999999999999999999999999999998888899999999999999999
Q ss_pred chhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 004505 250 AVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVF 329 (748)
Q Consensus 250 Pl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl~g~~f 329 (748)
|++|++|++|++.++++.+. ..+++++|++++.+++.++|+++.|.+++.+. ++.++++++++|++||+++.+|
T Consensus 149 PlaG~lFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~g~~~~f~~~~~~~-~~~~l~~~illGi~~Gl~~~lf 222 (388)
T cd01033 149 PLAGALFALEILLRTISLRS-----VVAALATSAIAAAVASLLKGDHPIYDIPPMQL-STPLLIWALLAGPVLGVVAAGF 222 (388)
T ss_pred chHHHHHHHHHHHHhccHHH-----HHHHHHHHHHHHHHHHHhCCCCceeecCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766543 45688999999999999999999998886554 4778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Q 004505 330 TRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT 409 (748)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t 409 (748)
++++.++++++++ . .+.++++.+++++++++..++|+.+++|++.++.++++.. ..+.++.+++.|+++|
T Consensus 223 ~~~~~~~~~~~~~----~-~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i~~~~~~~~-----~~~~ll~~~~~K~~~t 292 (388)
T cd01033 223 RRLSQAARAKRPK----G-KRILWQMPLAFLVIGLLSIFFPQILGNGRALAQLAFSTTL-----TLSLLLILLVLKIVAT 292 (388)
T ss_pred HHHHHHHHHHhcc----c-cchHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCCc-----hHHHHHHHHHHHHHHH
Confidence 9999998876532 1 2335678899999999999999999999999988886542 3456677889999999
Q ss_pred HHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhc-
Q 004505 410 ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR- 488 (748)
Q Consensus 410 ~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg- 488 (748)
++|+|+|++||+|+|++++||++|+.++++++. .+|+ .++..|++|||+|++++++|+|+|++++++|+||
T Consensus 293 ~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~----~~p~----~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~ 364 (388)
T cd01033 293 LLALRAGAYGGLLTPSLALGALLGALLGIVWNA----LLPP----LSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQ 364 (388)
T ss_pred HHHHccCCCccchHHHHHHHHHHHHHHHHHHHH----hCCc----ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999987643 2343 3678999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhh
Q 004505 489 DYRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 489 ~~~~llP~~~a~~~a~~v~~~~~ 511 (748)
+++.++|+|+++++|+.+++.+.
T Consensus 365 ~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 365 NPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998774
No 7
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=2.2e-56 Score=499.98 Aligned_cols=403 Identities=22% Similarity=0.311 Sum_probs=327.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHh
Q 004505 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQI 167 (748)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~----------~g~~~~~~~~ 167 (748)
|+++|+++..++.+++++.++.... .+|..+++.+++++++++++ +|+++++..+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l 65 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGY---------------CNYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTIL 65 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHH
Confidence 6789999999999999888765321 12333456777788877776 3677777777
Q ss_pred hcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHhhhHhhhh
Q 004505 168 KQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKIALVAAGAASGIA 244 (748)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~---~~~~~~~~l~~~g~aag~a 244 (748)
++... .+.+..+..+.|++++++++++|+|+|||||++|+|+++|++++|+++ .++++||++++||+|||++
T Consensus 66 ~g~~~-----~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~~~~r~li~~GaaAGla 140 (445)
T cd03684 66 SGFII-----RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNEAKRREILSAAAAAGVA 140 (445)
T ss_pred cCccc-----cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhH
Confidence 64311 134445677899999999999999999999999999999999999874 5777888899999999999
Q ss_pred hhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhc----CCcceeecccCCCCccchHHHHHHHHH
Q 004505 245 SGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL----GTQSAFTVPSYDLKSAAELPLYLILGM 320 (748)
Q Consensus 245 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~----g~~~~~~~~~~~~~~~~~l~~~i~lGi 320 (748)
|+||||++|++|++|++.++++.++ .++++++|++|+++.+.+. +....|.++....++++++++++++|+
T Consensus 141 AaF~APi~G~lFalE~l~~~~~~~~-----l~~~~~as~~a~~v~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~i~lGi 215 (445)
T cd03684 141 VAFGAPIGGVLFSLEEVSYYFPLKT-----LWRSFFCALVAAFTLKSLNPFGTGRLVLFEVEYDRDWHYFELIPFILLGI 215 (445)
T ss_pred HhcCCccchhhhhhHhhhhhccHHH-----HHHHHHHHHHHHHHHHHhcccCCCCceEEeccCCCCccHHHHHHHHHHHH
Confidence 9999999999999999988777655 4568899999999998762 333445544333456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCC----------
Q 004505 321 LCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTA---------- 390 (748)
Q Consensus 321 ~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~---------- 390 (748)
+||++|.+|++++.++++++++.+. +.++++++.+++++++++.++.|+..++|++.+++++++....
T Consensus 216 ~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~~~g~~~i~~l~~~~~~~~~~~~~~~~~ 293 (445)
T cd03684 216 FGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTRLDMTELLELLFNECEPGDDNSLCCYRD 293 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHccchhhHHHHHHhcCCCccccccccccc
Confidence 9999999999999999998876541 2345778999999999999999999999999888887642110
Q ss_pred ----C--CchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCC---------CCCc
Q 004505 391 ----S--APGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGN---------VAVA 455 (748)
Q Consensus 391 ----~--~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~---------~~~~ 455 (748)
+ ....+.++.++++|+++|++|+|+|+|||+|+|++++||++|++++.++..+. ..+|+. ....
T Consensus 294 ~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~ 372 (445)
T cd03684 294 PPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA-YSYPDSIFFACCTAGPSCI 372 (445)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH-hhCCcccccccccCCCCcc
Confidence 0 01345677788999999999999999999999999999999999999876432 112321 1125
Q ss_pred chHHHHHHHHHHHHHHhccchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhhcCCCCC
Q 004505 456 EPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSL 531 (748)
Q Consensus 456 ~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~~l 531 (748)
+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+++ .++||.+++.|++|++
T Consensus 373 ~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~---~siY~~~l~~~g~p~l 445 (445)
T cd03684 373 TPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGK---EGIYDAHIHLNGYPFL 445 (445)
T ss_pred CchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHhcCCCCC
Confidence 789999999999999999999999999999999999999999999999999999964 4699999999999874
No 8
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3.5e-54 Score=478.94 Aligned_cols=391 Identities=27% Similarity=0.420 Sum_probs=325.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 004505 97 LGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQ 166 (748)
Q Consensus 97 iG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~----------~g~~~~~~~ 166 (748)
+|+++|+++.+|++++++.+++.+...+.. .+....|+.++++|.++|++++++ .|+++++..
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~ 73 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFA-------ANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGV 73 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhc-------ccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence 488999999999999999999887532110 011112333456777888888775 246777776
Q ss_pred hhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhh
Q 004505 167 IKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASG 246 (748)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~ 246 (748)
+++.. .+...+....|++++++++++|+|+|||||++|+|+++|++++++++.++++++.+++||+|||++++
T Consensus 74 l~~~~-------~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~~~~~~~~l~~~g~aag~aa~ 146 (402)
T cd01031 74 LAGLL-------PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKTSPEERRQLIAAGAAAGLAAA 146 (402)
T ss_pred HcCCC-------CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHH
Confidence 66432 12233456789999999999999999999999999999999999999888888899999999999999
Q ss_pred cccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHHHHHHHHHH
Q 004505 247 FNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVS 326 (748)
Q Consensus 247 f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl~g 326 (748)
||||++|++|++|++.++++.+. .+++++++++++++++.++++++.|.++.++.+++.++++++++|++||++|
T Consensus 147 f~aPl~g~lf~~E~~~~~~~~~~-----~~~~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g 221 (402)
T cd01031 147 FNAPLAGVLFVLEELRHSFSPLA-----LLTALVASIAADFVSRLFFGLGPVLSIPPLPALPLKSYWLLLLLGIIAGLLG 221 (402)
T ss_pred hCCccHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887664332 4568899999999999999999999888777678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 004505 327 VVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKV 406 (748)
Q Consensus 327 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~ 406 (748)
.+|++++.+.++++++.+ +.++++++.+++++++++.++.|+.+++|++.++++++.. .....++.+++.|+
T Consensus 222 ~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~ 293 (402)
T cd01031 222 YLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGLILSLAGGN-----FSISLLLLIFVLRF 293 (402)
T ss_pred HHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC-----chHHHHHHHHHHHH
Confidence 999999999988876542 3456778899999999999999999999998887776532 23556777889999
Q ss_pred HHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 004505 407 VATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFEL 486 (748)
Q Consensus 407 ~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~El 486 (748)
++|++|+++|++||.|+|++++||++|+++|++++.+ +|.. ..+|..|+++||+|++++++|+|+|++++++|+
T Consensus 294 ~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~----~~~~--~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~El 367 (402)
T cd01031 294 IFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQL----GPIP--ISAPATFAIAGMAAFFAAVVRAPITAIILVTEM 367 (402)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh----cCcc--cccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999887543 4432 257999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHh
Q 004505 487 TRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRT 523 (748)
Q Consensus 487 tg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~ 523 (748)
||+++.++|+|+++++|+++++.+.+ .++||..+
T Consensus 368 tg~~~~l~p~~ia~~ia~~v~~~~~~---~siY~~~l 401 (402)
T cd01031 368 TGNFNLLLPLMVVCLVAYLVADLLGG---KPIYEALL 401 (402)
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHhCC---CChhHHHh
Confidence 99999999999999999999998853 34555543
No 9
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1.7e-53 Score=477.82 Aligned_cols=401 Identities=26% Similarity=0.384 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHH---HHHHHHHHHHHHHH----------H
Q 004505 92 LIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRI---LLIPVTGGVIVGMM----------H 158 (748)
Q Consensus 92 l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~p~~ggl~vg~~----------~ 158 (748)
++++++|+++|+++.+|++++++.+++.++..... ...+|+.+ ++.+.+++++.+++ +
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~Gs 72 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASV---------ADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGS 72 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 57899999999999999999999999876432110 11122211 22333444444433 2
Q ss_pred HHHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhcc-CHHHHHHHHHh
Q 004505 159 GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKIALVAA 237 (748)
Q Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~-~~~~~~~l~~~ 237 (748)
|+++++..+++.. ..+ ..+....|++++++++++|+|+|||||++|+|+++|++++++++. ++++++++++|
T Consensus 73 Gi~~i~~~l~~~~-----~~~--~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~~~~~~~li~~ 145 (438)
T PRK05277 73 GIPEIEGALEGLR-----PVR--WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRSDEARHTLLAA 145 (438)
T ss_pred CHHHHHHHHcCCC-----ccc--hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 4666666665331 111 123456899999999999999999999999999999999999998 77778889999
Q ss_pred hhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHH
Q 004505 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLI 317 (748)
Q Consensus 238 g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~ 317 (748)
|+|||++++||||++|++|++|++.++++.. .-..+++++++++++.+.+.+.++.+.|.++.++..++.+++.+++
T Consensus 146 G~aaglaa~f~APl~g~lf~~E~~~~~~~~~---~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~ 222 (438)
T PRK05277 146 GAAAGLAAAFNAPLAGILFVIEEMRPQFRYS---LISIKAVFIGVIMATIVFRLFNGEQAVIEVGKFSAPPLNTLWLFLL 222 (438)
T ss_pred HHHHhHHHhcCCchHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999887643211 1123567899999999999999998989888776667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCchHHH
Q 004505 318 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWL 397 (748)
Q Consensus 318 lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~ 397 (748)
+|++||++|.+|++++.++++++++++++...+.++...++|++++++.+++|+..++|++.+++.+++. .+...
T Consensus 223 lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~-----~~~~~ 297 (438)
T PRK05277 223 LGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAVGGGFNLIPIALAGN-----FSIGM 297 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHcCC-----chHHH
Confidence 9999999999999999999888766543222222344567888889999999999999999998887643 23455
Q ss_pred HHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchH
Q 004505 398 LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPL 477 (748)
Q Consensus 398 l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPl 477 (748)
++.+++.|+++|++|+|+|+|||+|+|++++||++|+.+|++++.. +|.. ..+|..|+++||+|++++++|+|+
T Consensus 298 l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~----~p~~--~~~~~~~a~~G~aA~la~~~~aPl 371 (438)
T PRK05277 298 LLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAAL----FPQY--HIEPGTFAIAGMGALFAATVRAPL 371 (438)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----cCcc--cccHHHHHHHHHHHHHHHHHHhHH
Confidence 6678899999999999999999999999999999999999877543 4532 257899999999999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhh
Q 004505 478 TSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLA 525 (748)
Q Consensus 478 t~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~ 525 (748)
|++++++|+||+++.++|+++++++|+++++.+.+ .++|+..+++
T Consensus 372 t~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~---~~iy~~~l~~ 416 (438)
T PRK05277 372 TGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGG---KPIYSALLER 416 (438)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCC---CChHHHHHHH
Confidence 99999999999999999999999999999998853 3466665553
No 10
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-52 Score=466.10 Aligned_cols=400 Identities=33% Similarity=0.525 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHH-H----------H
Q 004505 90 LLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGM-M----------H 158 (748)
Q Consensus 90 l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~-~----------~ 158 (748)
.+..++++|+++++....+....++...+...... ... ..++|+.+++|+.+|+++|. + +
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~ 92 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS--------AAQ-APGPWLLPLVPALGGLLVGALLVYKFAPEARGS 92 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--------ccc-cchhHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 44455555555555555555444443332110000 011 12233467788999999993 2 2
Q ss_pred HHHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHHhh
Q 004505 159 GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAG 238 (748)
Q Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~g 238 (748)
|+++++..+++.. ...+.+...+|.+++++++++|+|+|||||++|+|+++++.++++++.++++||.+++||
T Consensus 93 Gi~~~i~a~~~~~-------~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~~~~~r~Ll~~G 165 (443)
T COG0038 93 GIPQAIEALHGRK-------GRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLSREDRRILLAAG 165 (443)
T ss_pred ChhHHHHHHhcCC-------CcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4555555555431 123345556799999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhcccchhhHHHHHHHhhcc-cccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHH
Q 004505 239 AASGIASGFNAAVAGCFFAIETVLRP-LRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLI 317 (748)
Q Consensus 239 ~aag~aa~f~aPl~g~lf~~E~~~~~-~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~ 317 (748)
+|||+||+||||++|++|++|++.+. ++.+ ...++++++++++.+.+.+.+.++.+.+++.+..+.++++.+++
T Consensus 166 aAaGlaaaF~aPlagvlF~~E~l~~~~~~~~-----~l~p~~vaa~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
T COG0038 166 AAAGLAAAFNAPLAGALFAIEVLYGRFLEYR-----ALVPVLVAAVVALLVAGLFGGPHFLLPIVTTPHMSLWDLLLYLV 240 (443)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHhhcccHH-----HHHHHHHHHHHHHHHHHHcCCCCceeeccccCcCCHHHHHHHHH
Confidence 99999999999999999999999876 4443 35678999999999999999988888877777678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCchHHH
Q 004505 318 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWL 397 (748)
Q Consensus 318 lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~ 397 (748)
+|+++|++|.+|.++....++++ ++.+.+.++++++++++++++.++.|+.+++|+..++..++... .+.
T Consensus 241 lGii~G~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~l~g~~~l~~P~~lg~G~~~~~~~~~~~~------~~~ 310 (443)
T COG0038 241 LGIIAGLFGVLLSRLLALSRRFF----RRLPLPPLLRPALGGLLVGALGLLFPEVLGNGYGLIQLALAGEG------GLL 310 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hcCcchHHHHHHHHHHHHHHHHHhchhhhCCCccHHHHHHccCc------cHH
Confidence 99999999999999987665544 34456678899999999999999999999999998887776442 233
Q ss_pred -HHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccch
Q 004505 398 -LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVP 476 (748)
Q Consensus 398 -l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aP 476 (748)
+..+++.|+++|.+|+|+|+|||+|+|++++|+++|.+++.++.. .+|.. ...+..|+++||+|++++++|+|
T Consensus 311 ~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~----~~~~~--~~~~~~~al~Gm~a~la~~~~aP 384 (443)
T COG0038 311 VLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGL----LFPPS--ILEPGLFALLGMAAFLAATTRAP 384 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHh----hcCcc--ccchHHHHHHHHHHHHHHHhccc
Confidence 677899999999999999999999999999999999999987653 34432 24678999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhhcCCC
Q 004505 477 LTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYS 529 (748)
Q Consensus 477 lt~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~ 529 (748)
+|++++++|+||+++.++|+|+++++++.+++.... ..+|+.....++.+
T Consensus 385 lta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~---~~~~~~~~~~~~~~ 434 (443)
T COG0038 385 LTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGG---RPIYTQLLARRGAP 434 (443)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCC---CcHHHHHHHhcCch
Confidence 999999999999999999999999999999998753 33455545555544
No 11
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=7e-53 Score=466.12 Aligned_cols=373 Identities=29% Similarity=0.411 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhcCCc
Q 004505 102 GLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM---------HGLLEILNQIKQSSS 172 (748)
Q Consensus 102 Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~---------~g~~~~~~~~~~~~~ 172 (748)
|+++..|+.++++.+++..+... ..+|+.+++.|++|+++++++ +|+++++..+++...
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~p~~~~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~ 68 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA------------THPWLPLLLTPAGFALIAWLTRRFFPGAAGSGIPQVIAALELPSA 68 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH------------hchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHccccc
Confidence 57788999999999988753211 124544567788888777776 368888888875432
Q ss_pred ccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccC-HHHHHHHHHhhhHhhhhhhcccch
Q 004505 173 LDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENN-RERKIALVAAGAASGIASGFNAAV 251 (748)
Q Consensus 173 ~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~-~~~~~~l~~~g~aag~aa~f~aPl 251 (748)
...+ ++++.+..+.|++++++++++|+|+|||||++|+|++++++++++++.. +++|++|++||+|||+||+||||+
T Consensus 69 ~~~~--~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPl 146 (390)
T cd01034 69 AARR--RLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLILAGGAAGLAAAFNTPL 146 (390)
T ss_pred cccc--ccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHhHHHHhCCcc
Confidence 1111 2455567778999999999999999999999999999999999999984 577778999999999999999999
Q ss_pred hhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 004505 252 AGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTR 331 (748)
Q Consensus 252 ~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl~g~~f~~ 331 (748)
+|++|++|++.+++..+. ..++++++++++++++.++|+++.|.+++.+..++.++++++++|++||++|.+|++
T Consensus 147 aG~lF~~E~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~illGii~G~~g~lF~~ 221 (390)
T cd01034 147 AGIVFAIEELSRDFELRF-----SGLVLLAVIAAGLVSLAVLGNYPYFGVAAVALPLGEAWLLVLVCGVVGGLAGGLFAR 221 (390)
T ss_pred hhHHHHHHHhhhhhhHHH-----HHHHHHHHHHHHHHHHHHcCCCCccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988765543 345678888899999999999999988866656778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc-CCchhHHHhhhHHHHHHHHhhcc-cccccChhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Q 004505 332 LVAWFTKSFDFIKEKF-GLPPVVCPALGGLGAGIIALRYP-GILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT 409 (748)
Q Consensus 332 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~gl~~g~~~~~~p-~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t 409 (748)
.+.++++.+++.+++. ..++++.+.++|++++++.+++| +..++|++.+++.+++... . ...+++.|+++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~~~~~~~~~---~----~~~~~l~K~i~t 294 (390)
T cd01034 222 LLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQARAALEGGGG---L----PLWFGLLKFLAT 294 (390)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHHHHHhCCCc---c----cHHHHHHHHHHH
Confidence 9999988877654322 23445677788888888888775 6788999999888764321 1 123567999999
Q ss_pred HHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhcC
Q 004505 410 ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRD 489 (748)
Q Consensus 410 ~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~ 489 (748)
.+|+++|+|||+|+|++++||++|++++.++ +. .++..|+++||+|++++++|+|+|++++++|+|++
T Consensus 295 ~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~--------~~----~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~ 362 (390)
T cd01034 295 LLSYWSGIPGGLFAPSLAVGAGLGSLLAALL--------GS----VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGD 362 (390)
T ss_pred HHHHHcCCCcceechHHHHHHHHHHHHHHHh--------cC----CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 9999999999999999999999999998754 21 36899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhc
Q 004505 490 YRILLPLMGAVGLAIWVPSVANQ 512 (748)
Q Consensus 490 ~~~llP~~~a~~~a~~v~~~~~~ 512 (748)
++.++|+++++++|+++++.+++
T Consensus 363 ~~~l~p~lia~~~A~~v~~~~~~ 385 (390)
T cd01034 363 QQMLLPLLAAALLASGVSRLVCP 385 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999998853
No 12
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=7.1e-53 Score=473.89 Aligned_cols=394 Identities=23% Similarity=0.319 Sum_probs=294.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHH---------
Q 004505 87 EWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM--------- 157 (748)
Q Consensus 87 ~~~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~--------- 157 (748)
++..|++++++|+++|+++++|+.++++++++.+....+ +.........|..+++.|+++|++++++
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~ 104 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKN----YIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAA 104 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 466677889999999999999999999999885432100 0000001122333456788888888876
Q ss_pred -HHHHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhh-----------c
Q 004505 158 -HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMM-----------E 225 (748)
Q Consensus 158 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~-----------~ 225 (748)
+|+++++..+++...+ +....++.+.|++++++++++|+|+|||||++|+|+++|+++++++ +
T Consensus 105 GsGip~v~~~l~g~~~~-----~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~ 179 (466)
T cd03685 105 GSGIPEVKGYLNGVKIP-----HILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFR 179 (466)
T ss_pred CCCHHHHHHHHcCcCcc-----ccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhh
Confidence 3677777766643111 2333456678999999999999999999999999999999998732 2
Q ss_pred --cCHHHHHHHHHhhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhc---CC--cce
Q 004505 226 --NNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL---GT--QSA 298 (748)
Q Consensus 226 --~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~---g~--~~~ 298 (748)
.++.+|+++++||+|||+||+||||++|++|++|++.++|+.+..+ ..++++++++.+++.+. +. ...
T Consensus 180 ~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~-----~~l~~s~ias~va~~~~~~~~~~~~~~ 254 (466)
T cd03685 180 YFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTW-----RTFFSSMIVTFTLNFFLSGCNSGKCGL 254 (466)
T ss_pred hccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHH-----HHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 2556667899999999999999999999999999998777655432 23444444444444321 11 111
Q ss_pred --------eeccc-CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhc
Q 004505 299 --------FTVPS-YDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY 369 (748)
Q Consensus 299 --------~~~~~-~~~~~~~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~ 369 (748)
|..+. ...++++++++++++|++||++|.+|++++.++++++++.+++ +++.+ .+.+++++++....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~-~l~~~lv~~~~~~~ 330 (466)
T cd03685 255 FGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHK---GKLLK-VLEALLVSLVTSVV 330 (466)
T ss_pred cCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cchhH-HHHHHHHHHHHHHH
Confidence 22221 2234678999999999999999999999999998887654321 22222 23333333332222
Q ss_pred ccccccChhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004505 370 PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIP 449 (748)
Q Consensus 370 p~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p 449 (748)
+. ...+..++++|+++|++|+|+|+|||+|+|++++||++|+++|.++..+ +|
T Consensus 331 ~~-----------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~----~~ 383 (466)
T cd03685 331 AF-----------------------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSY----FG 383 (466)
T ss_pred HH-----------------------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHH----cc
Confidence 10 1234556678999999999999999999999999999999999887543 33
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhhcCCC
Q 004505 450 GNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYS 529 (748)
Q Consensus 450 ~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~ 529 (748)
.. ..+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.++ .++||..++.+|+|
T Consensus 384 ~~--~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~----~siY~~~l~~~g~p 457 (466)
T cd03685 384 FT--SIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFN----EGIYDIIIQLKGVP 457 (466)
T ss_pred cc--CCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhC----CCHHHHHHHhCCCc
Confidence 22 3578999999999999999999999999999999999999999999999999999875 36999999999999
Q ss_pred CC
Q 004505 530 SL 531 (748)
Q Consensus 530 ~l 531 (748)
++
T Consensus 458 ~l 459 (466)
T cd03685 458 FL 459 (466)
T ss_pred cc
Confidence 87
No 13
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.1e-52 Score=468.19 Aligned_cols=389 Identities=24% Similarity=0.313 Sum_probs=303.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cchhHHHhhhhchhHHHHHHHHHHHHHHHHHH----------HH
Q 004505 91 LLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPN-EGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HG 159 (748)
Q Consensus 91 ~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~----------~g 159 (748)
|++.+++|+++|+++..++.++++..++....... +...| .+|..++++|++++++++++ +|
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsG 74 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSL-------LQYLVWVAYPVALVLFSALFCKYISPQAVGSG 74 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH-------HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC
Confidence 44567889999999999999988887765432111 00011 12334467788888877776 36
Q ss_pred HHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhc------cCHHHHHH
Q 004505 160 LLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME------NNRERKIA 233 (748)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~------~~~~~~~~ 233 (748)
+++++..+++... .+....++...|++++++++++|+|+|||||++|+|+++++.++++++ .++++|++
T Consensus 75 Ip~v~~~l~g~~~-----~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~ 149 (426)
T cd03683 75 IPEMKTILRGVVL-----PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRRME 149 (426)
T ss_pred HHHHHHHHcCCCc-----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHHHH
Confidence 7777766664321 124445667789999999999999999999999999999999999874 35667778
Q ss_pred HHHhhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhc----CCcce---eeccc--C
Q 004505 234 LVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL----GTQSA---FTVPS--Y 304 (748)
Q Consensus 234 l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~----g~~~~---~~~~~--~ 304 (748)
+++||+|||+||+||||++|++|++|+++++++.+. .++++++|++++.+++.+. +..+. |..+. .
T Consensus 150 Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~-----~~~~~i~s~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (426)
T cd03683 150 MLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRN-----YWRGFFAATCGAFTFRLLAVFFSDQETITALFKTTFFVD 224 (426)
T ss_pred HHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHH-----HHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccCC
Confidence 999999999999999999999999999988876654 3457788888888877643 23332 32221 1
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCchhHHHhhhHHHHHHHHhhcccccccChhhHH
Q 004505 305 DLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE---KFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVE 381 (748)
Q Consensus 305 ~~~~~~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~ 381 (748)
..++++++++++++|++||++|.+|++++.++.+++++.++ ..+.++++++.+++++++++. +|
T Consensus 225 ~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~--~p----------- 291 (426)
T cd03683 225 FPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLT--FP----------- 291 (426)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHH--HH-----------
Confidence 23456899999999999999999999999999887765432 123455677888888877643 34
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCC-----CCCCcc
Q 004505 382 EILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG-----NVAVAE 456 (748)
Q Consensus 382 ~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~-----~~~~~~ 456 (748)
...++.+++.|+++|++|+|+|+|||+|+|++++||++|+++|.++..+ +|+ +....+
T Consensus 292 -------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~----~p~~~~~~~~~~~~ 354 (426)
T cd03683 292 -------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVL----FPEGIRGGISNPIG 354 (426)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHH----cCcccccCCCCCcC
Confidence 2345567889999999999999999999999999999999999877543 441 012357
Q ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhhcccccchhhhHhhhcCCCCC
Q 004505 457 PQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSL 531 (748)
Q Consensus 457 ~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y~~l 531 (748)
|..|+++||+|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.++ +++||..++.+++|++
T Consensus 355 ~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~----~~iY~~~l~~~~~p~l 424 (426)
T cd03683 355 PGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQ----PSIYDSIIKIKKLPYL 424 (426)
T ss_pred chHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhC----CCHHHHHHHhCCCCCC
Confidence 89999999999999999998766 5999999999999999999999999999885 3699999999999987
No 14
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1.2e-52 Score=458.97 Aligned_cols=332 Identities=37% Similarity=0.630 Sum_probs=271.1
Q ss_pred HHHHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccC-HHHHHHHHH
Q 004505 158 HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENN-RERKIALVA 236 (748)
Q Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~-~~~~~~l~~ 236 (748)
+|+++++..+++... ....+..+.|++++++++++|+|+|||||++|+|++++++++|+++.+ +++++.+++
T Consensus 20 ~Gi~~v~~~~~~~~~-------~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~ 92 (355)
T PF00654_consen 20 SGIPEVKAALRGKSG-------RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLA 92 (355)
T ss_dssp -SHHHHHHHCTTSS----------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCC-------CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHH
Confidence 367787777775421 134456678999999999999999999999999999999999999955 442667999
Q ss_pred hhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceee-cccCCCCccchHHHH
Q 004505 237 AGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT-VPSYDLKSAAELPLY 315 (748)
Q Consensus 237 ~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~-~~~~~~~~~~~l~~~ 315 (748)
||+|||+||+||||++|++|++|++.++++.+. .++++++|++++++++.+.++++.|. +|+...+++++++++
T Consensus 93 ~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 167 (355)
T PF00654_consen 93 AGAAAGLAAAFNAPLAGVLFALEELSRDFSVRL-----LLPALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPLF 167 (355)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTT-----HHHHHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHHH
T ss_pred HHHHHHHHHHhcCCcccceehhheeeccccchh-----hHHHHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHHH
Confidence 999999999999999999999999887776654 45689999999999999999999998 887667788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhccc--ccccChhhHHHHHhcCCCCCCc
Q 004505 316 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPG--ILYWGFTNVEEILHTGKTASAP 393 (748)
Q Consensus 316 i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~--~~g~G~~~i~~~l~~~~~~~~~ 393 (748)
+++|++||++|.+|+++..++++++++++ +++.++++++.++|++++++.+++|+ ++++|++.+++++++... ..
T Consensus 168 ~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~~--~~ 244 (355)
T PF00654_consen 168 LLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSPP--WF 244 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCcc--hh
Confidence 99999999999999999999999988776 44445567999999999999999999 999999999988865311 23
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhc
Q 004505 394 GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVC 473 (748)
Q Consensus 394 ~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~ 473 (748)
..+.++.+++.|+++|.+|+++|+|||+|+|++++|+++|++++.++.. .+|+... .+|..|+++||+|++++++
T Consensus 245 ~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~----~~~~~~~-~~~~~~al~G~~a~~~a~~ 319 (355)
T PF00654_consen 245 SLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGS----FFPGISS-VDPGVYALVGMAAFLAAVT 319 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHH----H-GGG-T--SHHHHHHHHTTHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHh----hCCCcCC-CchHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999999999999987754 3454322 2799999999999999999
Q ss_pred cchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 004505 474 SVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSV 509 (748)
Q Consensus 474 ~aPlt~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~ 509 (748)
|+|++++++++|+||++++++|+|+++++|++++++
T Consensus 320 ~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 320 RAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp S-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999863
No 15
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=4.3e-52 Score=462.51 Aligned_cols=371 Identities=25% Similarity=0.292 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHh
Q 004505 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQI 167 (748)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~----------~g~~~~~~~~ 167 (748)
|+++|+++..|+.++++.+++..........+ ....|..+++.|++++++++++ +|++|++..+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 74 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGS------YLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYL 74 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 45677777777777777766643222110000 0012222356677777665554 3678887777
Q ss_pred hcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhc-------------cCHHHHHHH
Q 004505 168 KQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME-------------NNRERKIAL 234 (748)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~-------------~~~~~~~~l 234 (748)
++... .+++..++.+.|++++++++++|+|+|||||++|+|+++|++++++++ .++++|+++
T Consensus 75 ~g~~~-----~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l 149 (416)
T cd01036 75 NGVHL-----PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDF 149 (416)
T ss_pred cCCcc-----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHH
Confidence 64311 134556677899999999999999999999999999999999998654 356677789
Q ss_pred HHhhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceee--------------
Q 004505 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT-------------- 300 (748)
Q Consensus 235 ~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~-------------- 300 (748)
++||+|||++|+||||++|++|++|++.++++.++ .++++++|++++++++.+.+..+.+.
T Consensus 150 l~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (416)
T cd01036 150 LVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRL-----AWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTV 224 (416)
T ss_pred HHHHhhcchhhccCCcceeeeeeeHHhhccccHHH-----HHHHHHHHHHHHHHHHHhccccCCccccccccccceeccc
Confidence 99999999999999999999999999988776654 45678899999999988876543321
Q ss_pred cccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhHHHhhhHHHHHHHHhhcccccccChhh
Q 004505 301 VPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEK-FGLPPVVCPALGGLGAGIIALRYPGILYWGFTN 379 (748)
Q Consensus 301 ~~~~~~~~~~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~ 379 (748)
++....++++++++++++|++||++|.+|++++.++.+++++.++. .+.++++++.+++++++++.+
T Consensus 225 ~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------ 292 (416)
T cd01036 225 FELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY------------ 292 (416)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH------------
Confidence 2222334568999999999999999999999999999888765432 234456788888888877764
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCCCcch
Q 004505 380 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG--NVAVAEP 457 (748)
Q Consensus 380 i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~--~~~~~~~ 457 (748)
...++.+++.|+++|.+|+++|+|||+|+|++++||++|+++|.++..++....+. .....+|
T Consensus 293 ---------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T cd01036 293 ---------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADP 357 (416)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccCh
Confidence 23455678899999999999999999999999999999999998876543211100 0113578
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhh
Q 004505 458 QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 458 ~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~~~llP~~~a~~~a~~v~~~~~ 511 (748)
..|+++||||++++++|+|+|++++++|+||++++++|+|+++++|+++++.++
T Consensus 358 ~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~ 411 (416)
T cd01036 358 GVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC 411 (416)
T ss_pred HHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999986
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=5.2e-51 Score=451.45 Aligned_cols=374 Identities=43% Similarity=0.656 Sum_probs=315.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhh
Q 004505 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---------GLLEILNQIK 168 (748)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~---------g~~~~~~~~~ 168 (748)
|+++|+++.+|++++++.++++|+..+.... ....+|++++++|++|+++++++. |+++++..++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~ 74 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELA------AGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIA 74 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccc------cccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHH
Confidence 6789999999999999999999876543210 011245556788999999988763 4556666665
Q ss_pred cCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhhcc
Q 004505 169 QSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFN 248 (748)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~f~ 248 (748)
... +....+..+.|++++++++++|+|+|+|||++|+|+++|++++++++.++.+++.+++||++||++++||
T Consensus 75 ~~~-------~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~~~~~~~~l~~~G~aaglaa~f~ 147 (383)
T cd00400 75 LGG-------GRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRLSRNDRRILVACGAAAGIAAAFN 147 (383)
T ss_pred hCC-------CCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 321 1223456678999999999999999999999999999999999999988777888999999999999999
Q ss_pred cchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHHHHHHHHHHHH
Q 004505 249 AAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVV 328 (748)
Q Consensus 249 aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl~g~~ 328 (748)
||++|++|++|++.+++..+. ..++++++++++++++.+.++.+.|.++....+++.++++++++|++||++|.+
T Consensus 148 aPl~g~lf~~E~~~~~~~~~~-----~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gv~~g~~g~~ 222 (383)
T cd00400 148 APLAGALFAIEVLLGEYSVAS-----LIPVLLASVAAALVSRLLFGAEPAFGVPLYDPLSLLELPLYLLLGLLAGLVGVL 222 (383)
T ss_pred ChhHHHHHHHHHHHHhccHHH-----HHHHHHHHHHHHHHHHHHcCCCCeeeCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987764432 456889999999999999999988888766667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCchHHHHHHHHHHHHHH
Q 004505 329 FTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVA 408 (748)
Q Consensus 329 f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~ 408 (748)
|++++.++++++++. +.++++++.+++++++++.++.|+..++|++.+++..++. .+...+..+++.|+++
T Consensus 223 f~~~~~~~~~~~~~~----~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~~~~~~~~-----~~~~~l~~~~~~K~~~ 293 (383)
T cd00400 223 FVRLLYKIERLFRRL----PIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAILLALAGE-----LSLLLLLLLLLLKLLA 293 (383)
T ss_pred HHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHcCC-----hhHHHHHHHHHHHHHH
Confidence 999999998877543 3456788999999999999999999999999887776532 2345566788999999
Q ss_pred HHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhc
Q 004505 409 TALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR 488 (748)
Q Consensus 409 t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg 488 (748)
|++|+++|+|||.|+|++++||++|+.+++++.. .+|.. ..++..|+++||+|++++++|+|+|++++++|+||
T Consensus 294 t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~----~~~~~--~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg 367 (383)
T cd00400 294 TALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPA----LFPGL--VASPGAYALVGMAALLAAVLRAPLTAILLVLELTG 367 (383)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH----hCCcc--cCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhC
Confidence 9999999999999999999999999999987754 34432 35799999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHH
Q 004505 489 DYRILLPLMGAVGLAI 504 (748)
Q Consensus 489 ~~~~llP~~~a~~~a~ 504 (748)
+++.++|+++++++||
T Consensus 368 ~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 368 DYSLLLPLMLAVVIAY 383 (383)
T ss_pred ChhhHHHHHHHHHhcC
Confidence 9999999999998875
No 17
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=3.8e-50 Score=443.43 Aligned_cols=388 Identities=17% Similarity=0.232 Sum_probs=299.6
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q 004505 80 LTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG 159 (748)
Q Consensus 80 ~~~~~~~~~~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~g 159 (748)
++...+....++++++++|+++|+++++|+.++++.++++|...+.... .. ...+|| .+++|++||+++|++..
T Consensus 2 ~~~~~~~~~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~----~~-~~~~~~-~~~~~~~gGllvgll~~ 75 (414)
T PRK03655 2 LHPRARTMLLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLG----IA-QDSPLW-IIGMLTLTGIAVGLVIR 75 (414)
T ss_pred CCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc----cc-cccchH-HHHHHHHHHHHHHHHHH
Confidence 3445567788999999999999999999999999999999987653210 01 112343 45778999999999832
Q ss_pred HHHHHHHhhcCCcccccCc--ccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHHh
Q 004505 160 LLEILNQIKQSSSLDRQGF--DLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAA 237 (748)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~ 237 (748)
.. +...++ .++.... ..........|++++++++++|+|+|||||++|+|++++++++|+++...+ ++.++.|
T Consensus 76 ~~---~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~~~~-~~~l~~~ 150 (414)
T PRK03655 76 FS---PGHAGP-DPATEPLIGAPVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVN-RMDWTIL 150 (414)
T ss_pred Hc---CCCCCC-hHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCCC-hhHHHHH
Confidence 21 000000 0000000 011223345789999999999999999999999999999999988854333 3357889
Q ss_pred hhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHH
Q 004505 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLI 317 (748)
Q Consensus 238 g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~ 317 (748)
|+|||+||+||||++|++|++|++.+++....+.. ..+.++++++++.+++.+++....|.++++...++.+++++++
T Consensus 151 gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~--~~~~v~aa~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (414)
T PRK03655 151 ASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDR--LFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAI 228 (414)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHhCCCCcceecCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999987765421111 1233567777888888776655555666666667788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhc-ccccccChhhHHHHHhcCCCCCCchHH
Q 004505 318 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY-PGILYWGFTNVEEILHTGKTASAPGIW 396 (748)
Q Consensus 318 lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~-p~~~g~G~~~i~~~l~~~~~~~~~~~~ 396 (748)
+|++||++|.+|++...++++++++. +.| +++++++|+++++++++. |+++++||+++++.+++++ ...+
T Consensus 229 lgi~~gl~G~lf~~~~~~~~~~~~~~----~~p-~~~~~lgGl~vg~l~l~~~~~~~g~Gy~~i~~~~~~~~----~~~~ 299 (414)
T PRK03655 229 VAAIAIAAGMVAVWCLPRLHALMHRL----KNP-VLVLGIGGFILGILGVIGGPLTLFKGLDEMQQMAANQA----FSAS 299 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----ccc-hHHHHHHHHHHHHHHHHhCCccccCCHHHHHHHHhcCC----ccHH
Confidence 99999999999999988887776533 334 356789999999999875 7789999999988876532 3466
Q ss_pred HHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhcc--
Q 004505 397 LLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS-- 474 (748)
Q Consensus 397 ~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~-- 474 (748)
.++.+++.|+++|.+|+++|+|||+|+|++++||++|..++.+ +|+ .++...+++||+|++++++|
T Consensus 300 ~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l--------~p~----~~~~~~v~~~m~a~la~vtr~p 367 (414)
T PRK03655 300 DYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH--------VPA----VPAAITVSCAILGIVLVVTRDG 367 (414)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh--------ccC----CChHHHHHHHHHHHHHHHhccc
Confidence 6777889999999999999999999999999999999988754 343 35778899999999999999
Q ss_pred --chHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 004505 475 --VPLTSVLLLFELTRDYRILLPLMGAVGLAIWV 506 (748)
Q Consensus 475 --aPlt~~vl~~Eltg~~~~llP~~~a~~~a~~v 506 (748)
+|+|++++++|+| ++|+|++++++-|+
T Consensus 368 ~~sp~ta~viv~em~-----~~~l~~~~~~~~~~ 396 (414)
T PRK03655 368 WLSLFMAAVVVPDTT-----LLPLLCIVMLPAWL 396 (414)
T ss_pred hhhHHHHHHHHhcch-----HHHHHHHHHHHHHH
Confidence 6999999999999 89999998888776
No 18
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=7.3e-49 Score=432.01 Aligned_cols=360 Identities=22% Similarity=0.304 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 004505 94 GCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM--------HGLLEILN 165 (748)
Q Consensus 94 ~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~--------~g~~~~~~ 165 (748)
++++|+++|+++++|+.++++.+++.|+ .+|+ .+.+|+.|.++..+. .|.+++++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------------~~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~ 64 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------------HPWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIE 64 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHH
Confidence 6899999999999999999999988653 1332 344566544443333 24556666
Q ss_pred HhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhh
Q 004505 166 QIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIAS 245 (748)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa 245 (748)
.++++.. ....+....|++++.+++++|+|+|||||++|+|++++++++++++.++++++.+++||+|||++|
T Consensus 65 ~~~~~~~-------~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~~~~~~r~l~~~g~aAglaa 137 (378)
T cd03682 65 EIHGPEE-------GIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKLPEEDRRILLIAGIAAGFAA 137 (378)
T ss_pred HHHccCC-------CCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 6664311 122334557999999999999999999999999999999999999988877778999999999999
Q ss_pred hcccchhhHHHHHHHhh-cccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHHHHHHHH
Q 004505 246 GFNAAVAGCFFAIETVL-RPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGV 324 (748)
Q Consensus 246 ~f~aPl~g~lf~~E~~~-~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl 324 (748)
+||||++|++|++|++. ++++.+ ..++++++|++++.+++.+...++.|.++.....+++++++++++|++||+
T Consensus 138 ~f~aPl~g~~f~~E~~~~~~~~~~-----~~~~~~i~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~Gi~~gl 212 (378)
T cd03682 138 VFGTPLAGAIFALEVLVLGRLRYS-----ALIPCLVAAIVADWVSHALGLEHTHYHIVFIPTLDPLLFVKVILAGIIFGL 212 (378)
T ss_pred HhCCcHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHhCCCCCccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999985 433332 245678899999999987666666676654444567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhc--ccccccChhhHHHHHhcCCCCCCchHHHHHHHH
Q 004505 325 VSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY--PGILYWGFTNVEEILHTGKTASAPGIWLLTQLA 402 (748)
Q Consensus 325 ~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~--p~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~ 402 (748)
+|.+|++++.++++++++. ..++++++.++|++++++.++. |+..+.|++.+++.+.+++. . ...+
T Consensus 213 ~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G~g~~~i~~~~~~~~~----~----~~~~ 280 (378)
T cd03682 213 AGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLGLGTPLIEDSFFGGTV----Y----PYDW 280 (378)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHhcCCc----h----HHHH
Confidence 9999999999998877532 2345678999999999988775 45778899888773433321 1 1235
Q ss_pred HHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHH
Q 004505 403 AAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLL 482 (748)
Q Consensus 403 ~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl 482 (748)
+.|+++|.+|+|+|+|||+|+|++++||++|+.++++++ .++..|++|||+|++++++|+|+|++++
T Consensus 281 l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~-------------~~~~~~~~~Gmaa~laa~~raPlt~ivl 347 (378)
T cd03682 281 LLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG-------------LPVSLLAALGFVAVFAGATNTPLACIIM 347 (378)
T ss_pred HHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 799999999999999999999999999999999987542 2467999999999999999999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHH
Q 004505 483 LFELTRDYRILLPLMGAVGLAIWVPS 508 (748)
Q Consensus 483 ~~Eltg~~~~llP~~~a~~~a~~v~~ 508 (748)
++|+|| ++.++|+++++++|+.++.
T Consensus 348 ~~Eltg-~~~~~p~~ia~~ia~~~~~ 372 (378)
T cd03682 348 GIELFG-AENAPYFFIACLVAYLFSG 372 (378)
T ss_pred HHHHhC-ccchHHHHHHHHHHHHHhC
Confidence 999999 5778899999999999864
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.80 E-value=2.9e-18 Score=172.10 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=119.1
Q ss_pred HHHhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccc
Q 004505 565 AEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 644 (748)
Q Consensus 565 ~~~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~ 644 (748)
.-......++..|||+++++++++++++.+|.+.|.+++++.+||+|++.+++|+||.+|+.+....... +..+
T Consensus 237 a~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~------qrlr 310 (382)
T COG3448 237 ALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPF------QRLR 310 (382)
T ss_pred HHHHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchH------HHhh
Confidence 3444566789999999999999999999999999999999999999999999999999999985332111 0001
Q ss_pred cccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 645 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 645 ~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
.....+++.+|++++ .++.+|++..|+.-++.+.+.+++||+|+ +|+++||||.+|++..+.+
T Consensus 311 ~~~~~~vk~imt~~v---------~tv~pdtpa~~lvp~lad~g~H~lpvld~--------~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 311 FLRPPTVKGIMTTPV---------VTVRPDTPAVELVPRLADEGLHALPVLDA--------AGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred ccCCCcccccccCcc---------eeecCCCcHHHHHHHhhcCCcceeeEEcC--------CCcEEEEeeHHHHHHHHHH
Confidence 123567999999887 89999999999999999999999999996 8999999999999998876
Q ss_pred HHH
Q 004505 725 EVN 727 (748)
Q Consensus 725 ~~~ 727 (748)
...
T Consensus 374 ~~~ 376 (382)
T COG3448 374 NWS 376 (382)
T ss_pred HHH
Confidence 543
No 20
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.75 E-value=8e-17 Score=187.63 Aligned_cols=185 Identities=22% Similarity=0.184 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hcCCch---hHHHhhhHHHHHHHHhhc-ccccccChhhHH
Q 004505 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFI----KE-KFGLPP---VVCPALGGLGAGIIALRY-PGILYWGFTNVE 381 (748)
Q Consensus 311 ~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~----~~-~~~~~~---~~~~~l~gl~~g~~~~~~-p~~~g~G~~~i~ 381 (748)
.+...+++|+++|+++.+|..++.+..+++... .+ ....++ ++.++++|++++++.++. +...+.|.....
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~ 103 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYM 103 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHH
Confidence 345678999999999999999999988774320 01 001222 234566777777765443 222223333333
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHH
Q 004505 382 EILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYA 461 (748)
Q Consensus 382 ~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a 461 (748)
+..+++... .+.+ ..+.|++.+.+|+|+|.+.|.++|++.+||++|..++++++. +. .+...+.
T Consensus 104 ~~~~~~~~~--~~~~----~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~------~~----~~~r~l~ 167 (574)
T PRK01862 104 EAVALGDGV--VPVR----QSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF------DP----PRLRLLV 167 (574)
T ss_pred HHHHcCCCC--CChH----HHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC------CH----HHHHHHH
Confidence 444433221 2222 245699999999999999999999999999999999886531 11 2456788
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHh-cCc--hhHHHHHHHHHHHHHHHHhhh
Q 004505 462 LVGMAATLASVCSVPLTSVLLLFELT-RDY--RILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 462 ~~GaaA~la~~~~aPlt~~vl~~Elt-g~~--~~llP~~~a~~~a~~v~~~~~ 511 (748)
.||+||.++++++||+++++|.+|.+ +++ +.+.|.++++++|+.+++.+.
T Consensus 168 ~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 220 (574)
T PRK01862 168 ACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFA 220 (574)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999986 544 688999999999999998874
No 21
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.73 E-value=2.4e-17 Score=163.20 Aligned_cols=124 Identities=24% Similarity=0.299 Sum_probs=115.7
Q ss_pred hhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccc
Q 004505 569 LLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNT 648 (748)
Q Consensus 569 ~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~ 648 (748)
.+.+.+|+++|++++.++.+++|++||.+.+.++++++.||+|++ +++|++|..|+..++.++.. +
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~-------------~ 233 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNL-------------D 233 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCc-------------c
Confidence 356788999999999999999999999999999999999999966 99999999999999887644 6
Q ss_pred hhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 649 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 649 ~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
.+|+|+|++++ +++++|+.+.||+++|.++++.+|.|+|. +|+.+|+||++|+++.+.
T Consensus 234 ~kV~~~M~k~v---------itI~eDe~i~dAir~M~~~nVGRLlV~ds--------~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 234 AKVSDYMRKNV---------ITINEDEDIYDAIRLMNKNNVGRLLVTDS--------NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ccHHHHhccCC---------ceEcCchhHHHHHHHHHhcCcceEEEEcc--------CCcEEEEEehHHHHHHhh
Confidence 78999999988 99999999999999999999999999996 899999999999998875
No 22
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.65 E-value=1.9e-15 Score=167.61 Aligned_cols=178 Identities=26% Similarity=0.320 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h---cCCch---hHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCC
Q 004505 319 GMLCGVVSVVFTRLVAWFTKSFDFIKE-K---FGLPP---VVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTAS 391 (748)
Q Consensus 319 Gi~~Gl~g~~f~~~~~~~~~~~~~~~~-~---~~~~~---~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~ 391 (748)
|+++|+++.+|.+++.+.++++..... . ...++ .+.+.+++++++++..+.|...+.|.+++.+.++.....
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~~~- 79 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGGGR- 79 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCCCC-
Confidence 688999999999999999887654321 0 01222 355678888888888777667788999887777643321
Q ss_pred CchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHH
Q 004505 392 APGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLAS 471 (748)
Q Consensus 392 ~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~ 471 (748)
... ...+.|++.+.+++++|.++|.+.|++.+|+++|..+++.++. + ..+...++.|||+|.+++
T Consensus 80 -~~~----~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~------~----~~~~~~l~~~G~aaglaa 144 (383)
T cd00400 80 -LPL----RVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL------S----RNDRRILVACGAAAGIAA 144 (383)
T ss_pred -CCH----HHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC------C----HHHHHHHHHHHHHHHHHH
Confidence 112 2467899999999999999999999999999999999876421 1 135778999999999999
Q ss_pred hccchHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHHhhhc
Q 004505 472 VCSVPLTSVLLLFELTRDYR---ILLPLMGAVGLAIWVPSVANQ 512 (748)
Q Consensus 472 ~~~aPlt~~vl~~Eltg~~~---~llP~~~a~~~a~~v~~~~~~ 512 (748)
++++|++++++.+|++++.. .++|+++++++++.+++.+..
T Consensus 145 ~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~ 188 (383)
T cd00400 145 AFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLFG 188 (383)
T ss_pred hcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999997554 789999999999999998853
No 23
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.64 E-value=2.5e-15 Score=167.66 Aligned_cols=178 Identities=28% Similarity=0.301 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CchhH----HHhhhHHHHHHHHhh-cccccccChhhHHHHHhcCCCC
Q 004505 318 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKF-G-LPPVV----CPALGGLGAGIIALR-YPGILYWGFTNVEEILHTGKTA 390 (748)
Q Consensus 318 lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~-~-~~~~~----~~~l~gl~~g~~~~~-~p~~~g~G~~~i~~~l~~~~~~ 390 (748)
+|+++|+++.+|.+++.+.++++....+.. . .+.++ .+.+++++++.+..+ .|+..++|++++++.++.....
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~~~ 80 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLLPP 80 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCCCc
Confidence 488999999999999999988765443211 1 11122 223445555555544 8999999999999888754321
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHH
Q 004505 391 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLA 470 (748)
Q Consensus 391 ~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la 470 (748)
. .....+.|++.+.+|+++|.++|.+.|++.+|+++|..+++.++. ...+...+..|||+|.++
T Consensus 81 --~----~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~----------~~~~~~~l~~~g~aag~a 144 (402)
T cd01031 81 --N----WWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT----------SPEERRQLIAAGAAAGLA 144 (402)
T ss_pred --c----cHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhHH
Confidence 1 123467999999999999999999999999999999999875421 113578899999999999
Q ss_pred HhccchHHHHHHHHH-HhcCc--hhHHHHHHHHHHHHHHHHhhh
Q 004505 471 SVCSVPLTSVLLLFE-LTRDY--RILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 471 ~~~~aPlt~~vl~~E-ltg~~--~~llP~~~a~~~a~~v~~~~~ 511 (748)
+++++|++++++.+| +++++ ..+.|+++++++|+.+++.+.
T Consensus 145 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~ 188 (402)
T cd01031 145 AAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFF 188 (402)
T ss_pred HHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999 66654 479999999999999998764
No 24
>PRK05277 chloride channel protein; Provisional
Probab=99.63 E-value=1.1e-14 Score=164.13 Aligned_cols=184 Identities=21% Similarity=0.218 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CchhHHHhhhHHHHHHHH-----hhcccccccChhhHHHHH
Q 004505 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG---LPPVVCPALGGLGAGIIA-----LRYPGILYWGFTNVEEIL 384 (748)
Q Consensus 313 ~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~gl~~g~~~-----~~~p~~~g~G~~~i~~~l 384 (748)
.+++++|+++|+++.+|.++++++++++........ ++.++.+.+.+.+.++++ .+.|+..|+|++++++.+
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 467899999999999999999999888765432211 122222333333333333 245888999999999888
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHH
Q 004505 385 HTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVG 464 (748)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~G 464 (748)
++.+. +.. ....+.|++.+.+++++|.++|.+.|++.+|+++|..+++.++. . . ..+...+..||
T Consensus 82 ~~~~~---~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~----~-~----~~~~~~li~~G 146 (438)
T PRK05277 82 EGLRP---VRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRL----R-S----DEARHTLLAAG 146 (438)
T ss_pred cCCCc---cch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHccc----C-C----HHHHHHHHHHH
Confidence 74432 221 12357899999999999999999999999999999999876531 0 1 13577899999
Q ss_pred HHHHHHHhccchHHHHHHHHH-HhcC--ch--hHHHHHHHHHHHHHHHHhhh
Q 004505 465 MAATLASVCSVPLTSVLLLFE-LTRD--YR--ILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 465 aaA~la~~~~aPlt~~vl~~E-ltg~--~~--~llP~~~a~~~a~~v~~~~~ 511 (748)
|||.+++++++|++++++.+| ++++ ++ .+.|+++++++|+.+.+.+.
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~ 198 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN 198 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 5553 33 47899999999999998875
No 25
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.60 E-value=2.7e-14 Score=158.58 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=128.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-------
Q 004505 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH------- 158 (748)
Q Consensus 86 ~~~~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~------- 158 (748)
..|..+++.+++|+++|+++.+|.+.+++.+++..+... ..++.+.++.+.++|++++.+.
T Consensus 197 ~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 264 (390)
T cd01034 197 PLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVR------------RFRRRRPVLFAALCGLALALIGLVSGGLT 264 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cccchhhHHHHHHHHHHHHHHHHhCCCcc
Confidence 346677889999999999999999999888776532110 0011112333445555554431
Q ss_pred ---HHHHHHHHhhcCCcccccCcccccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhccCHHHHHHHH
Q 004505 159 ---GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV 235 (748)
Q Consensus 159 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~ 235 (748)
|...+....++.. .......+.|++.+.+++++|.+.|+|+|++++|+++|..++++++.. +...++
T Consensus 265 ~G~G~~~i~~~~~~~~--------~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~~--~~~~~a 334 (390)
T cd01034 265 FGTGYLQARAALEGGG--------GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGSV--SQGALV 334 (390)
T ss_pred ccCcHHHHHHHHhCCC--------cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcCC--CchHHH
Confidence 2223322222110 112244568999999999999999999999999999999999988752 233689
Q ss_pred HhhhHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcC
Q 004505 236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLG 294 (748)
Q Consensus 236 ~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g 294 (748)
.+||+|++++++|+|+++++|++|++.. + ....|+++++++|+.+++.+.+
T Consensus 335 ~~G~aA~laa~~~aPlt~~vl~~Elt~~-~-------~~l~p~lia~~~A~~v~~~~~~ 385 (390)
T cd01034 335 LLGMAAFLAGVTQAPLTAFVIVMEMTGD-Q-------QMLLPLLAAALLASGVSRLVCP 385 (390)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhCC-h-------hhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999853 1 1245688999999999998744
No 26
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.59 E-value=6.9e-15 Score=135.48 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=109.1
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchh
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL 650 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 650 (748)
..++++++|+.+++.+++++++.+++++|++++++++||+++ ++++|-||.+|+.+...+... +..+.+
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e----------~i~~~~ 131 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME----------SIRSLR 131 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc----------chhhhh
Confidence 568899999999999999999999999999999999999996 899999999999999655422 245678
Q ss_pred hhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 651 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 651 V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
|+++|..++ ++|++|++++.+.+++..++. +.|++ +|+++||||+.|+++.+++
T Consensus 132 vr~vM~e~f---------P~Vs~~~~l~vI~~LL~~~~A--VlV~e---------~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 132 VREVMGEPF---------PTVSPDESLNVISQLLEEHPA--VLVVE---------NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHhcCCC---------CcCCCCCCHHHHHHHHhhCCe--EEEEe---------CCceEEEEeHHHHHHHHhc
Confidence 999999988 999999999999999987664 77887 7999999999999998764
No 27
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.59 E-value=2.9e-14 Score=157.88 Aligned_cols=176 Identities=18% Similarity=0.145 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 004505 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH-GLLEILNQ 166 (748)
Q Consensus 88 ~~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~-g~~~~~~~ 166 (748)
|..+.+.+++|+++|+++.+|.+.+++.+++.... .+ ++..+.++|+++|++. ..++
T Consensus 202 ~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~----------------~~--~~~~~~l~gl~~g~~~~~~p~---- 259 (388)
T cd01033 202 TPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKG----------------KR--ILWQMPLAFLVIGLLSIFFPQ---- 259 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------cc--hHHHHHHHHHHHHHHHHHHHH----
Confidence 66777889999999999999999999888764110 01 1233567888877752 2233
Q ss_pred hhcCCcccccCc---cc---ccchhhHHHHHHHHHHHhccCccCCchHHHHHHHHHHHHHHhhhcc--CHHHHHHHHHhh
Q 004505 167 IKQSSSLDRQGF---DL---VAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN--NRERKIALVAAG 238 (748)
Q Consensus 167 ~~~~~~~~~~~~---~~---~~~~~~~~k~~~~~~~l~~G~s~G~Egp~v~iga~~~~~~~~~~~~--~~~~~~~l~~~g 238 (748)
+.+++....+.. ++ ......+.|++.+.+|+++|.+.|.|+|++.+|+++|..+++.++. +......++.+|
T Consensus 260 ~~G~G~~~i~~~~~~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~a~~G 339 (388)
T cd01033 260 ILGNGRALAQLAFSTTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSIAAFALIG 339 (388)
T ss_pred HhCCcHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 222221111000 00 1123456899999999999999999999999999999999987642 122234689999
Q ss_pred hHhhhhhhcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhh
Q 004505 239 AASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL 292 (748)
Q Consensus 239 ~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 292 (748)
|+|.+++++|+|+++++|++|++...+. ...|+++++++|+.+++.+
T Consensus 340 maA~laa~~~aPlt~ivl~~Eltg~~~~-------~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 340 AAAFLAATQKAPLTALILVLEFTRQNPL-------FLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCHH-------HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998652221 2457899999999999865
No 28
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.57 E-value=1.8e-14 Score=156.52 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=108.2
Q ss_pred hhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccc
Q 004505 571 EELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNT 648 (748)
Q Consensus 571 ~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~ 648 (748)
..++|+|+|.+ +++++++++|+.+|++.|.+++++.+||+|++|+++|+||.+|+.+.+..+.. ..+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~-----------~~~ 268 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGID-----------LRQ 268 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCC-----------ccc
Confidence 67899999997 89999999999999999998888888889989999999999999886543211 234
Q ss_pred hhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 649 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 649 ~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
.+|+++|++++ .++.+++++.+|+++|.+++++++||+| +++++|+||++|+++.
T Consensus 269 ~~v~~im~~~~---------~~v~~~~~l~~a~~~m~~~~~~~lpVv~---------~~~lvGiit~~dil~~ 323 (326)
T PRK10892 269 ASIADVMTPGG---------IRVRPGILAVDALNLMQSRHITSVLVAD---------GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCHHHhcCCCC---------EEECCCCCHHHHHHHHHHCCCcEEEEee---------CCEEEEEEEhHHhHhc
Confidence 67999999877 8999999999999999999999999998 5799999999999864
No 29
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.57 E-value=2.6e-14 Score=154.97 Aligned_cols=124 Identities=24% Similarity=0.340 Sum_probs=110.0
Q ss_pred hhh---hhhhhhccccC--ceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCcc
Q 004505 569 LLE---ELKVSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 643 (748)
Q Consensus 569 ~L~---~l~V~diM~~~--~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 643 (748)
.+. .++|+++|.++ ++++++++++.+|.+.|.+++...+||+|++|+++|+|+.+|+.+.+.....
T Consensus 190 ~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~--------- 260 (321)
T PRK11543 190 ALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA--------- 260 (321)
T ss_pred HHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC---------
Confidence 466 68999999998 9999999999999999998888999999999999999999999887543221
Q ss_pred ccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 644 SDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 644 ~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
.+.+++++|++++ .++++++++.++++.|.+++.+.+||+|+ +++++|+||++|++++
T Consensus 261 ---~~~~v~~im~~~~---------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 ---LTTPVNEAMTRGG---------TTLQAQSRAIDAKEILMKRKITAAPVVDE--------NGKLTGAINLQDFYQA 318 (321)
T ss_pred ---cCCcHHHhcCCCC---------EEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHhc
Confidence 2346899999877 89999999999999999999999999995 6899999999999863
No 30
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.54 E-value=1.6e-13 Score=151.75 Aligned_cols=176 Identities=22% Similarity=0.330 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHHhhcccccccChhhHHHHHhcCCCCCCch
Q 004505 315 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPG 394 (748)
Q Consensus 315 ~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~~l~~~~~~~~~~ 394 (748)
.+++|+++|+++.+|++++.++.+++.. +. +. .....++|++++.+...+|...+.|.+++.+.++..+.. ..
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~--~~--~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~~~--~~ 74 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA--HP--WL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPEEG--IP 74 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh--HH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccCCC--Cc
Confidence 4789999999999999999999887532 11 11 122345566666666777777677888877777653321 11
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhcc
Q 004505 395 IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS 474 (748)
Q Consensus 395 ~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~ 474 (748)
. ...+.|++.+.+++++|.++|.+.|++.+|+++|..+++.++. + ..+...+..+||+|.++++++
T Consensus 75 ~----~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~------~----~~~~r~l~~~g~aAglaa~f~ 140 (378)
T cd03682 75 L----RMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL------P----EEDRRILLIAGIAAGFAAVFG 140 (378)
T ss_pred h----HHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC------C----HHHHHHHHHHHHHHHHHHHhC
Confidence 1 2345799999999999999999999999999999999875421 1 124567899999999999999
Q ss_pred chHHHHHHHHHHh--c--CchhHHHHHHHHHHHHHHHHhhh
Q 004505 475 VPLTSVLLLFELT--R--DYRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 475 aPlt~~vl~~Elt--g--~~~~llP~~~a~~~a~~v~~~~~ 511 (748)
+|++++++.+|.+ + ++..++|.++++++++.+++.+.
T Consensus 141 aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~ 181 (378)
T cd03682 141 TPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG 181 (378)
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999997 3 35778899999999999988764
No 31
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=7.8e-14 Score=126.44 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=94.5
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.+|.+.|.+++.+.+||+|++++++|+|+..|+.+..... ..+.+++++|.+++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-------------~~~~~v~~~~~~~~-- 66 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND-------------YETLKVCEVYIVPV-- 66 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc-------------ccccChhheeecCC--
Confidence 467889999999999999999999999999989999999999998742111 12346888998766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.+++++|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 67 -------~~v~~~~~l~~al~~m~~~~~~~lpVvd~--------~~~~~Giit~~di~~ 110 (111)
T cd04603 67 -------PIVYCDSKVTDLLRIFRETEPPVVAVVDK--------EGKLVGTIYERELLR 110 (111)
T ss_pred -------cEECCCCcHHHHHHHHHHcCCCeEEEEcC--------CCeEEEEEEhHHhhc
Confidence 89999999999999999999999999995 789999999999975
No 32
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=1.3e-13 Score=125.45 Aligned_cols=111 Identities=23% Similarity=0.409 Sum_probs=96.6
Q ss_pred ceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcccc
Q 004505 583 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYR 662 (748)
Q Consensus 583 ~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~ 662 (748)
+.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+.+....... ...+.+++++|.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~--- 69 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG----------PGCTAPVENVMTRAV--- 69 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC----------CcccCCHHHHhcCCC---
Confidence 5688999999999999999999999999999999999999999886533111 023467899998776
Q ss_pred CCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 663 GRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 663 ~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 70 ------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 70 ------VSCRPGDLLHDVWQVMKQRGLKNIPVVDE--------NARPLGVLNARDALK 113 (114)
T ss_pred ------eeECCCCCHHHHHHHHHHcCCCeEEEECC--------CCcEEEEEEhHhhcc
Confidence 89999999999999999999999999995 689999999999875
No 33
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.51 E-value=1.3e-13 Score=156.08 Aligned_cols=193 Identities=17% Similarity=0.169 Sum_probs=137.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---CC-c----hhHHHhhhHHHHHHHHh-hcccccccChhh
Q 004505 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIK-EKF---GL-P----PVVCPALGGLGAGIIAL-RYPGILYWGFTN 379 (748)
Q Consensus 310 ~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~---~~-~----~~~~~~l~gl~~g~~~~-~~p~~~g~G~~~ 379 (748)
..+.+.+++|+++|+++.+|..++.++++++.... +.. .. . .+..+++++++.+++.. +.|+..|+|.++
T Consensus 31 ~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~ 110 (466)
T cd03685 31 LKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPE 110 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHH
Confidence 34556799999999999999999999987743321 101 01 0 11334556666666655 459999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHH-------HHhhhCCCCC
Q 004505 380 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAE-------IINSAIPGNV 452 (748)
Q Consensus 380 i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~-------~~~~~~p~~~ 452 (748)
++..+++........ ...++.|++.+.+++|+|.|.|.++|++.+||++|..+++.... +++. +.
T Consensus 111 v~~~l~g~~~~~~l~----~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~-~~--- 182 (466)
T cd03685 111 VKGYLNGVKIPHILR----LKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY-FR--- 182 (466)
T ss_pred HHHHHcCcCccccch----HHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh-cc---
Confidence 988887432111111 23357899999999999999999999999999999999863210 1111 11
Q ss_pred CCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHHhh
Q 004505 453 AVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVA 510 (748)
Q Consensus 453 ~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg---~~~~llP~~~a~~~a~~v~~~~ 510 (748)
...+...+..|||||.+++++++|++++++.+|.+. +.+...+.++++++|..+++.+
T Consensus 183 ~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~~ 243 (466)
T cd03685 183 NDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFF 243 (466)
T ss_pred CHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 113567899999999999999999999999999875 2345566666666666666554
No 34
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.51 E-value=1.1e-13 Score=155.46 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=113.0
Q ss_pred HHHHhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCcc
Q 004505 564 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 643 (748)
Q Consensus 564 ~~~~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 643 (748)
.+....++.++++++|.++++++++++|+.|+++.|.+++++++||+|++++++|+||.+|+... .
T Consensus 80 ~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-----~--------- 145 (479)
T PRK07807 80 DVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-----D--------- 145 (479)
T ss_pred HHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-----c---------
Confidence 34456688999999999999999999999999999999999999999999999999999998532 0
Q ss_pred ccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 644 SDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 644 ~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
...+++++|++++ .++++++++.+|+++|.+++++.+||+|+ +++++|+||++||++...
T Consensus 146 ---~~~~V~diMt~~~---------itV~~d~sL~eAl~lM~~~~i~~LPVVD~--------~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 146 ---RFTQVRDVMSTDL---------VTLPAGTDPREAFDLLEAARVKLAPVVDA--------DGRLVGVLTRTGALRATI 205 (479)
T ss_pred ---cCCCHHHhccCCc---------eEECCCCcHHHHHHHHHhcCCCEEEEEcC--------CCeEEEEEEHHHHHHHhh
Confidence 1246999999877 99999999999999999999999999996 789999999999998655
Q ss_pred H
Q 004505 724 E 724 (748)
Q Consensus 724 ~ 724 (748)
.
T Consensus 206 ~ 206 (479)
T PRK07807 206 Y 206 (479)
T ss_pred C
Confidence 3
No 35
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.51 E-value=4.9e-13 Score=149.25 Aligned_cols=183 Identities=23% Similarity=0.284 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhh-cCCch---hHHHhhhHHHHHHHHhhc-c--cccccChh
Q 004505 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDF-----IKEK-FGLPP---VVCPALGGLGAGIIALRY-P--GILYWGFT 378 (748)
Q Consensus 311 ~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~-----~~~~-~~~~~---~~~~~l~gl~~g~~~~~~-p--~~~g~G~~ 378 (748)
.+.+.+++|+++|+.+.+|.+.++++++++-. ..+. ...++ ++.|+++|+++|++.+.+ | +..+.|.+
T Consensus 4 ~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~~ 83 (418)
T PRK01610 4 RLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAPT 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCcH
Confidence 35667899999999999999999887664311 0000 01222 344667888888876544 3 34456777
Q ss_pred hHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchH
Q 004505 379 NVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQ 458 (748)
Q Consensus 379 ~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~ 458 (748)
++.+..+++ .. .+.+ ..+.|++.+.+++++|.+.|.+.|+..+|+++|..+++.++ + ..+..
T Consensus 84 ~vi~av~~~-g~--~~~~----~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~-------~----~~~~r 145 (418)
T PRK01610 84 DYMEALQTD-GQ--FDYA----ASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT-------P----RQEWK 145 (418)
T ss_pred HHHHHHHcC-CC--CCcc----HHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC-------C----hHHHH
Confidence 777777652 21 1222 24589999999999999999999999999999999987542 1 13567
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh-c--CchhHHHHHHHHHHHHHHHHhhh
Q 004505 459 AYALVGMAATLASVCSVPLTSVLLLFELT-R--DYRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 459 ~~a~~GaaA~la~~~~aPlt~~vl~~Elt-g--~~~~llP~~~a~~~a~~v~~~~~ 511 (748)
.+..||++|.+++++++|++++++.+|.. + .+..+.|+++++++|+.+++.+.
T Consensus 146 ~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~~ 201 (418)
T PRK01610 146 LWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLLN 201 (418)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999975 4 34678999999999999998874
No 36
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=2.2e-13 Score=124.82 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=95.3
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhc--Cc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTR--GI 659 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~--~~ 659 (748)
++.++++++++.++++.|.+++.+++||+|++++++|+|+..|+.+....... ....+++++|++ ++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 70 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGAD-----------LQKVPVGVIMTRMPNI 70 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCC-----------ccCCCHHHHhCCCCCc
Confidence 46789999999999999998999999999988999999999999987543221 124568889874 44
Q ss_pred cccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCC---CeEEEEEEHhHHHH
Q 004505 660 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRK---QRIVAILHYDSIWN 720 (748)
Q Consensus 660 ~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~---g~lvGIIt~~Dll~ 720 (748)
.++++++++.+++++|.+++.+.+||+|+ + ++++|+||++|+++
T Consensus 71 ---------~~v~~~~~l~~~~~~~~~~~~~~lpVvd~--------~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 71 ---------TTTTPEESVLEAAKKLIEHQVDSLPVVEK--------VDEGLEVIGRITKTNITK 117 (118)
T ss_pred ---------EEECCCCcHHHHHHHHHHcCCCEeeEEeC--------CCccceEEEEEEhhheec
Confidence 79999999999999999999999999996 4 69999999999864
No 37
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=5.4e-13 Score=121.29 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=96.2
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+..... +..+.+++++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~- 70 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR----------DPDRVNVYEIMTKPL- 70 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC----------CCCccCHHHHhcCCC-
Confidence 57889999999999999999999999999987 899999999999986543211 112457889998766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++...+||+| +|+++|+||++|+++
T Consensus 71 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---------~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 71 --------ISVSPDMDIKYCARLMERTNIRRAPVVE---------NNELIGIISLTDIFL 113 (114)
T ss_pred --------eeECCCCCHHHHHHHHHHcCCCEeeEee---------CCEEEEEEEHHHhhc
Confidence 8999999999999999999999999999 488999999999875
No 38
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.48 E-value=4.7e-13 Score=121.79 Aligned_cols=111 Identities=28% Similarity=0.425 Sum_probs=96.2
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+.+... ....++.++|.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~-----------~~~~~~~~~~~~~~-- 68 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA-----------GEPSAVDEVATPPL-- 68 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc-----------cccccHHHhccCCc--
Confidence 56788999999999999999999999999999999999999999987543221 12345788888766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCC--CeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRK--QRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~--g~lvGIIt~~Dll~ 720 (748)
.++.+++++.+++++|.+++.+.+||+|+ + |+++|+||++|+++
T Consensus 69 -------~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~--------~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 69 -------LTVHPDEPLAHALDRMASRGLRQLPVVDR--------GNPGQVLGLLTRENVLL 114 (115)
T ss_pred -------eEECCCCCHHHHHHHHHHcCCceeeEEeC--------CCCCeEEEEEEhHHhhc
Confidence 89999999999999999999999999995 4 79999999999975
No 39
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.47 E-value=2.3e-13 Score=144.66 Aligned_cols=129 Identities=12% Similarity=0.209 Sum_probs=110.3
Q ss_pred hhhhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCcccc
Q 004505 569 LLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 645 (748)
Q Consensus 569 ~L~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 645 (748)
.+.+.+|+++|++ +++++++++++.++.+.+.+++++++||++++ ++++|+|+.+|++........
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~----------- 131 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE----------- 131 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC-----------
Confidence 3555699999998 69999999999999999999999999999976 799999999999875422111
Q ss_pred ccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHH
Q 004505 646 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 725 (748)
Q Consensus 646 ~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~ 725 (748)
...++++|++. .++++++++.++++.|.+++.+.+||+|+ +|.++|+||++|+++.+..+
T Consensus 132 --~~~l~~l~r~~----------~~V~e~~~l~~~L~~m~~~~~~~a~VvDe--------~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 132 --AFSMDKVLRQA----------VVVPESKRVDRMLKEFRSQRYHMAIVIDE--------FGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred --cCCHHHHcCCC----------cCcCCCCcHHHHHHHHHhcCCEEEEEEeC--------CCCEEEEeEHHHHHHHHhCC
Confidence 23477888643 58999999999999999999999999996 78899999999999999876
Q ss_pred HHh
Q 004505 726 VNH 728 (748)
Q Consensus 726 ~~~ 728 (748)
+..
T Consensus 192 i~d 194 (292)
T PRK15094 192 IED 194 (292)
T ss_pred Ccc
Confidence 544
No 40
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=5.8e-13 Score=122.35 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=92.0
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhh------hh
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVS------SI 654 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~------di 654 (748)
+++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+.+...++... ....++. +.
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~----------~~~~~~~~~~~~~~~ 70 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN----------NLDLTVGEALERRSQ 70 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc----------cccCCHHHHHhhccc
Confidence 3678999999999999999999999999999999999999999999865433210 0011122 22
Q ss_pred hhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 655 CTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 655 m~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
|.+++ .++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 71 ~~~~~---------~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--------~~~~~Givt~~di~~ 119 (120)
T cd04641 71 DFEGV---------RTCSPDDCLRTIFDLIVKARVHRLVVVDE--------NKRVEGIISLSDILQ 119 (120)
T ss_pred CCCCC---------eEEcCCCcHHHHHHHHHhcCccEEEEECC--------CCCEEEEEEHHHhhc
Confidence 33333 89999999999999999999999999995 689999999999875
No 41
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=4.2e-13 Score=119.20 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=85.1
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++++++++++.+|.+.|.+++++++||+|++ ++++|++|..|+.+.+. +
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------~- 52 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------L- 52 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------------------e-
Confidence 47889999999999999999999999999975 89999999999986511 2
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCC-CeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRK-QRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~-g~lvGIIt~~Dll~ 720 (748)
.++++++++.+|+++|.+++++++||+|+ + |+++|+||.+|++.
T Consensus 53 --------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~~~~giit~~d~~~ 97 (98)
T cd04618 53 --------VSIHPERSLFDAALLLLKNKIHRLPVIDP--------STGTGLYILTSRRILK 97 (98)
T ss_pred --------EEeCCCCcHHHHHHHHHHCCCCEeeEEEC--------CCCCceEEeehhhhhc
Confidence 78999999999999999999999999995 5 89999999999875
No 42
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.46 E-value=3e-13 Score=125.46 Aligned_cols=113 Identities=20% Similarity=0.176 Sum_probs=96.3
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++++++++.++++.|.+++++++||+|++++++|+++.+|+.+.+..... ..+.+++++|++++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~-----------~~~~~v~~im~~~~- 69 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV-----------QPSDPVSKALYKQF- 69 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc-----------CCCCcHHHHhhccc-
Confidence 467889999999999999999999999999998999999999999986544322 13568999999887
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHH---------HcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELME---------AKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~---------~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
.++.+++++.++.++|. +.+...+||+|+ +|+++||||++|++++
T Consensus 70 --------~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 70 --------KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK--------QEKPIGIVTKIDLLSY 123 (124)
T ss_pred --------eecCCCCCHHHHHhhcccCCceEEEecccccccccccc--------ccceEEEEehhHhhhh
Confidence 89999999999999653 335678888885 7899999999999875
No 43
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=5.9e-13 Score=122.68 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=98.4
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++++++++.++.+.|.+++++++||+|++++++|+|+.+|+.+.+............. ....+.++.++|.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~- 79 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLR-GRDKPETVGDIMSPPV- 79 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhh-cccccccHHHhccCCC-
Confidence 57889999999999999999999999999998899999999999987653321100000000 0113456888988766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.+++++|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 80 --------~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~g~~~Gvit~~di~~ 123 (124)
T cd04600 80 --------VTVRPDTPIAELVPLLADGGHHHVPVVDE--------DRRLVGIVTQTDLIA 123 (124)
T ss_pred --------eeeCCCCcHHHHHHHHHhcCCCceeEEcC--------CCCEEEEEEhHHhhc
Confidence 89999999999999999999999999996 789999999999875
No 44
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.46 E-value=2.5e-13 Score=140.16 Aligned_cols=119 Identities=19% Similarity=0.282 Sum_probs=110.4
Q ss_pred hhhhhhccc--cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccch
Q 004505 572 ELKVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTC 649 (748)
Q Consensus 572 ~l~V~diM~--~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~ 649 (748)
-++|+|+|+ .++..+.+++++++-.++-++++++++||+|+..+++|+||.+|+... ..+.
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~-----------------~~~t 249 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-----------------KPST 249 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC-----------------CCCc
Confidence 367999999 589999999999999999999999999999999999999999999865 2467
Q ss_pred hhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 650 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 650 ~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
++..+|++++ +++.+.+++..+.++|.-.+++.+||+|+ +++++|+||++|+++.+..
T Consensus 250 ~ieKVMtknp---------~tv~~~tsVAsvaq~MiwE~iem~PVv~~--------n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 250 TIEKVMTKNP---------ITVRAKTSVASVAQMMIWEGIEMLPVVDS--------NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred cHHHHhccCC---------eeecccchHHHHHHHHHhccceeeeEEcC--------CceEEEEEEHHHHHHHHHH
Confidence 8999999988 99999999999999999999999999997 8999999999999998864
No 45
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=7.6e-13 Score=119.41 Aligned_cols=109 Identities=25% Similarity=0.400 Sum_probs=95.7
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.|+.+.|.+.+++.+||+|++++++|+|+..|+.+.+..... +.++.++|.+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-------------~~~v~~~~~~~~-- 66 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP-------------DAPVRGVMRRDF-- 66 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC-------------CCcHHHHhcCCC--
Confidence 56789999999999999998889999999988999999999999987543221 346888998766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++...+||+|+ +++++|++|++|+.+
T Consensus 67 -------~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~G~it~~dl~~ 110 (111)
T cd04639 67 -------PTVSPSATLDAVLRLMQQGGAPAVPVVDG--------SGRLVGLVTLENVGE 110 (111)
T ss_pred -------cEECCCCcHHHHHHHHHhcCCceeeEEcC--------CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999995 689999999999875
No 46
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.46 E-value=6.9e-13 Score=148.66 Aligned_cols=190 Identities=18% Similarity=0.164 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C------chhHHHhhhHHHHHHHHh-hcccccccChhhHHHHH
Q 004505 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG-L------PPVVCPALGGLGAGIIAL-RYPGILYWGFTNVEEIL 384 (748)
Q Consensus 313 ~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l~gl~~g~~~~-~~p~~~g~G~~~i~~~l 384 (748)
.+.+++|+++|+++.+|..+.++..+++..+.+... . ..++.+.+++++.+.+.. +.|+..|+|-+++++.+
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 82 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTIL 82 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHH
Confidence 456799999999999999999988877665433211 1 112334555666666664 68999999999998888
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCCcchHHHHHH
Q 004505 385 HTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG-NVAVAEPQAYALV 463 (748)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~-~~~~~~~~~~a~~ 463 (748)
+..+... +.-...++.|++.+.+++++|.+.|.++|++.+||++|..+++..... +. ..+..+...+..|
T Consensus 83 ~g~~~~~----~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~-----~~~~~~~~~rr~Li~~ 153 (426)
T cd03683 83 RGVVLPE----YLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFF-----SGIYENESRRMEMLAA 153 (426)
T ss_pred cCCCccc----cccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccc-----cccccCHHHHHHHHHh
Confidence 7533211 111234678999999999999999999999999999999998765320 00 0011244579999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHhc-C--chhHHHHHHHHHHHHHHHHhhh
Q 004505 464 GMAATLASVCSVPLTSVLLLFELTR-D--YRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 464 GaaA~la~~~~aPlt~~vl~~Eltg-~--~~~llP~~~a~~~a~~v~~~~~ 511 (748)
|+||.++++++||++++++.+|... + ...+.|.++++++|..+.+.++
T Consensus 154 GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~ 204 (426)
T cd03683 154 ACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLA 204 (426)
T ss_pred HhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999863 3 3577899999999988887764
No 47
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.45 E-value=6.1e-13 Score=150.19 Aligned_cols=127 Identities=19% Similarity=0.325 Sum_probs=110.7
Q ss_pred hhhhhhhhhhccccCceEecCCCCHHHHHHHHHc-----CCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCc
Q 004505 568 MLLEELKVSRAMSKDFVKVALTVTLKEAIESMKD-----GQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSI 642 (748)
Q Consensus 568 ~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~-----~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~ 642 (748)
..+.+.+++++|+++++++++++|+.|+++.|++ ++...++|+|++++++|+|+.+|++.. .
T Consensus 126 l~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---~---------- 192 (449)
T TIGR00400 126 LSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---K---------- 192 (449)
T ss_pred hCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---C----------
Confidence 3456789999999999999999999999999975 345688999999999999999999752 1
Q ss_pred cccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHH
Q 004505 643 ASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 722 (748)
Q Consensus 643 ~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l 722 (748)
.+.+++++|++++ .++++++++.++.+.|.+++...+||||+ +|+++|+||.+|+++.+
T Consensus 193 ----~~~~v~~im~~~~---------~~v~~~~~~~eal~~m~~~~~~~lpVVD~--------~g~lvGiIt~~Dil~~l 251 (449)
T TIGR00400 193 ----PEEILSSIMRSSV---------FSIVGVNDQEEVARLIQKYDFLAVPVVDN--------EGRLVGIVTVDDIIDVI 251 (449)
T ss_pred ----CCCcHHHHhCCCC---------eeECCCCCHHHHHHHHHHcCCCEEeEEcC--------CCeEEEEEEHHHHHHHH
Confidence 1346999999877 88999999999999999999999999996 78999999999999999
Q ss_pred HHHHHh
Q 004505 723 REEVNH 728 (748)
Q Consensus 723 ~~~~~~ 728 (748)
.++..+
T Consensus 252 ~~~~~e 257 (449)
T TIGR00400 252 QSEATE 257 (449)
T ss_pred HhhhHH
Confidence 876543
No 48
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.2e-12 Score=118.63 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=95.5
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+..++++++++.++++.|.+.+.+.++|+|++++++|+++.+|+.+.+.+... ...++.++|.++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~------------~~~~v~~~~~~~~-- 68 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS------------LDDPVSEVMNRNP-- 68 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC------------cCCCHHHhhcCCC--
Confidence 35678999999999999999899999999999999999999999876543222 2346889998766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++.+.+||+|+ +++++|+||++|++.
T Consensus 69 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~di~~ 112 (113)
T cd04607 69 -------ITAKVGSSREEILALMRERSIRHLPILDE--------EGRVVGLATLDDLLS 112 (113)
T ss_pred -------EEEcCCCCHHHHHHHHHHCCCCEEEEECC--------CCCEEEEEEhHHhcc
Confidence 89999999999999999999999999996 789999999999864
No 49
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=8.6e-13 Score=119.86 Aligned_cols=112 Identities=22% Similarity=0.374 Sum_probs=93.3
Q ss_pred cCceEecCCCCHHHHHHHHHcCC-CCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGI 659 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~ 659 (748)
+++.++++++++.++.+.|.+++ .+.+||+|++++++|+|+.+|+.+...... .+.++.++|.+..
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~-------------~~~~v~~~~~~~~ 67 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW-------------AQTTVIQVMTPAA 67 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc-------------cccchhhhhcccc
Confidence 35788999999999999997665 889999999899999999999988653211 1346788887431
Q ss_pred cccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 660 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 660 ~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
+..++.+++++.++++.|.+++.+++||+|+ +++++|++|.+|+++
T Consensus 68 -------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~--------~~~~~Gvl~~~di~~ 113 (114)
T cd04801 68 -------KLVTVLSEESLAEVLKLLEEQGLDELAVVED--------SGQVIGLITEADLLR 113 (114)
T ss_pred -------cceEECCCCcHHHHHHHHHHCCCCeeEEEcC--------CCcEEEEEeccceec
Confidence 2268999999999999999999999999995 689999999999864
No 50
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.9e-12 Score=116.85 Aligned_cols=111 Identities=28% Similarity=0.396 Sum_probs=95.9
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+.+.+..... +....++.++|.++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~-- 69 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA----------SALDTPVSEIMTRNV-- 69 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC----------CccccCHHHhcCCCc--
Confidence 56788999999999999999999999999988999999999999987643321 012456888987766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+.+||++ +++++|+||.+|+++
T Consensus 70 -------~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---------~~~~~Gvit~~di~~ 112 (113)
T cd04623 70 -------ITVTPDDTVDEAMALMTERRFRHLPVVD---------GGKLVGIVSIGDVVK 112 (113)
T ss_pred -------EEECCCCcHHHHHHHHHHcCCCEeEEEe---------CCEEEEEEEHHHhhc
Confidence 8999999999999999999999999998 489999999999975
No 51
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.3e-12 Score=120.61 Aligned_cols=123 Identities=29% Similarity=0.307 Sum_probs=98.5
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGI 659 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~ 659 (748)
+++.+++++.++.++++.|.+.+++.+||+|++ ++++|+|+..|+.+.+.+.............+....++.++|.+++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 357789999999999999999999999999987 9999999999999876543221000000011123456888887766
Q ss_pred cccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 660 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 660 ~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 81 ---------~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--------~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ---------ITITPDDSIKDAAELMLEKRVGGLPVVDD--------DGKLVGIVTERDLLK 124 (125)
T ss_pred ---------eEeCCCCcHHHHHHHHHHcCCceEEEEcC--------CCcEEEEEEHHHhhc
Confidence 89999999999999999999999999995 689999999999975
No 52
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.8e-12 Score=117.08 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=94.7
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++++.|.+++++++||+|++++++|+++.+|+.+....... .+.++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~------------~~~~v~~~~~~~~-- 67 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF------------LEKKVFNIVSQDV-- 67 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc------------ccCcHHHHhcCCc--
Confidence 57789999999999999999999999999998999999999999876432211 2346888888766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 68 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~G~it~~di~~ 110 (111)
T cd04626 68 -------FYVNEEDTIDEALDIMREKQIGRLPVVD---------DNKLIGVVRTKDILD 110 (111)
T ss_pred -------EEEcCCCcHHHHHHHHHHcCCCeeeEeE---------CCEEEEEEEhHHhcc
Confidence 8999999999999999999999999999 488999999999864
No 53
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.1e-12 Score=116.70 Aligned_cols=110 Identities=26% Similarity=0.350 Sum_probs=95.9
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++.+.|.+.+++++||+|++++++|+++.+|+++.+..... ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~------------~~~~v~~~~~~~~-- 67 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID------------LDTPVSEIMTRDL-- 67 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC------------CccCHHHhccCCC--
Confidence 56789999999999999998899999999998999999999999887544322 2346888888766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++...+||+++ +|+++|++|++|+++
T Consensus 68 -------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~g~~~Gilt~~dl~~ 111 (112)
T cd04624 68 -------VTVDPDEPVAEAAKLMRKNNIRHHLVVDK--------GGELVGVISIRDLVR 111 (112)
T ss_pred -------EEECCCCcHHHHHHHHHHcCccEEEEEcC--------CCcEEEEEEHHHhcc
Confidence 89999999999999999999999999995 689999999999875
No 54
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.43 E-value=2e-12 Score=115.62 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+++++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+.. ..++.++|++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~------------------~~~~~~~~~~~~-- 61 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS------------------GGCCGDHAEPFK-- 61 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc------------------ccchhhhcccCC--
Confidence 577899999999999999988899999999889999999999998651 123678887665
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++...+||+|+ +++++|+||++|+++
T Consensus 62 -------~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 62 -------VTVSVDDDLRIVLSRMFAHDMSWLPCVDE--------DGRYVGEVTQRSIAD 105 (106)
T ss_pred -------EEECCCCCHHHHHHHHHHCCCCeeeEECC--------CCcEEEEEEHHHhhc
Confidence 78999999999999999999999999996 689999999999875
No 55
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=2.6e-12 Score=115.67 Aligned_cols=108 Identities=29% Similarity=0.444 Sum_probs=94.9
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++.+++++.++++.|.+++++++||+|++|+++|+++.+|+++.+... ..++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~---------------~~~~~~~~~~~~- 65 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD---------------KKSVEDIMTRNV- 65 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC---------------ccCHHHhcCCCC-
Confidence 5678899999999999999999999999999989999999999998764322 123788887666
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++.+.+||+++ +|+++|+||++|+.+
T Consensus 66 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~G~v~~~di~~ 109 (110)
T cd04605 66 --------ITATPDEPIDVAARKMERHNISALPVVDA--------ENRVIGIITSEDISK 109 (110)
T ss_pred --------eEECCCCcHHHHHHHHHHhCCCEEeEECC--------CCcEEEEEEHHHhhh
Confidence 89999999999999999999999999996 789999999999864
No 56
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=2.1e-12 Score=116.87 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=95.3
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++.+++++.++++.|.+.+++.+||+|++++++|+++.+|+.+....... ..+.++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~-----------~~~~~i~~~~~~~~-- 68 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE-----------LKDAKVREVMNSPV-- 68 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh-----------hcCCcHHHhccCCc--
Confidence 35788999999999999999999999999998999999999999876433211 12456888988766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++.+.+||+|+ +|+++|++|+.|+++
T Consensus 69 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--------~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 69 -------ITIDANDSIAKARWLMSNNNISRLPVLDD--------KGKVGGIVTEDDILR 112 (113)
T ss_pred -------eEECCCCcHHHHHHHHHHcCCCeeeEECC--------CCeEEEEEEHHHhhc
Confidence 89999999999999999999999999996 789999999999864
No 57
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.42 E-value=9.9e-13 Score=143.85 Aligned_cols=126 Identities=23% Similarity=0.238 Sum_probs=115.0
Q ss_pred hhhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhc-ccCCCCCCCCccccc
Q 004505 568 MLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK-LSSDNSKGDSIASDV 646 (748)
Q Consensus 568 ~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~-~~~~~~~~~~~~~~~ 646 (748)
..+-..++.++|+.+.+++++.+++.+|.+.|.+.+.+.+.|+|+++...||||++|+.+.... +.+
T Consensus 144 ~e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~------------ 211 (610)
T COG2905 144 SEFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRS------------ 211 (610)
T ss_pred chHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCC------------
Confidence 3456678999999999999999999999999999999999999999999999999999988443 333
Q ss_pred cchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 647 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 647 ~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
.+.+|+++||.++ .++++.+.+.||+-+|.+++++++||++ +|+++||||.+||++..+
T Consensus 212 ~~~~V~evmT~p~---------~svd~~~~~feAml~m~r~~I~hl~V~e---------~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 212 KTQKVSEVMTSPV---------ISVDRGDFLFEAMLMMLRNRIKHLPVTE---------DGQPLGILTLTDILRLFS 270 (610)
T ss_pred cccchhhhhccCc---------eeecCcchHHHHHHHHHHhCCceeeeec---------CCeeeEEeeHHHHHHhhC
Confidence 5788999999988 9999999999999999999999999998 799999999999998766
No 58
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.42 E-value=6.6e-13 Score=147.74 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=110.7
Q ss_pred Hhhhhhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCcc
Q 004505 567 EMLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIA 643 (748)
Q Consensus 567 ~~~L~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 643 (748)
...+++.+|+|+|++ ++++++.++++.|+++.+.+++++++||++++ ++++|+|+.+|++....+
T Consensus 185 vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~------------ 252 (408)
T TIGR03520 185 IVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK------------ 252 (408)
T ss_pred HhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc------------
Confidence 445778899999997 79999999999999999999999999999875 699999999999865321
Q ss_pred ccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 644 SDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 644 ~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
...+++++|++ + .+|++++++.++++.|++++.+..+|+|+ .|.++|+||.+|+++.+.
T Consensus 253 ---~~~~l~~~~~~-~---------~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE--------~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 253 ---KNFDWQSLLRE-P---------YFVPENKKLDDLLRDFQEKKNHLAIVVDE--------YGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred ---CCCCHHHHcCC-C---------eEeCCCCcHHHHHHHHHhcCceEEEEEcC--------CCCEEEEEEHHHHHHHHh
Confidence 12246777764 3 79999999999999999999999999996 799999999999999997
Q ss_pred HHHH
Q 004505 724 EEVN 727 (748)
Q Consensus 724 ~~~~ 727 (748)
.++.
T Consensus 312 gei~ 315 (408)
T TIGR03520 312 GDIS 315 (408)
T ss_pred CCCC
Confidence 6554
No 59
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.9e-12 Score=116.48 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=94.2
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
.++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+.... .+.+++++|.+++
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-----------------~~~~v~~~~~~~~- 63 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-----------------PDTTIEKVMTKNP- 63 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-----------------ccccHHHHhcCCC-
Confidence 3678899999999999999998899999999999999999999997430 1346889998766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.+++++|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 64 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~G~it~~di~~ 107 (108)
T cd04596 64 --------ITVNPKTSVASVAHMMIWEGIEMLPVVDD--------NKKLLGIISRQDVLK 107 (108)
T ss_pred --------eEECCCCCHHHHHHHHHHcCCCeeeEEcC--------CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999996 789999999999875
No 60
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.42 E-value=2.8e-12 Score=115.76 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=94.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+++++++++++.++++.|.+++.+.++|+|+ +++.|+++.+|+.+.+..... ..+.+++++|.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~-----------~~~~~i~~~~~~~~-- 67 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL-----------PSSTPVGEIATFPL-- 67 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC-----------CCCCCHHHHhCCCc--
Confidence 4678899999999999999888999999998 899999999999987543211 13456889998766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
..+++++++.++++.|.+++.+.+||+| +++++|+||++|+++
T Consensus 68 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~G~it~~dl~~ 110 (111)
T cd04589 68 -------ITVDPDDFLFNALLLMTRHRIHRVVVRE---------GGEVVGVLEQTDLLS 110 (111)
T ss_pred -------EEECCCCcHHHHHHHHHHhCccEEEEee---------CCEEEEEEEhHHhhc
Confidence 8999999999999999999999999998 589999999999875
No 61
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.4e-12 Score=143.29 Aligned_cols=182 Identities=27% Similarity=0.349 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc--CCchhHHHhhhHHHHH--HHHhhcccccccChhhHHHHHhcCC
Q 004505 315 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKE--KF--GLPPVVCPALGGLGAG--IIALRYPGILYWGFTNVEEILHTGK 388 (748)
Q Consensus 315 ~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~gl~~g--~~~~~~p~~~g~G~~~i~~~l~~~~ 388 (748)
..++|++.++....+.....++...+..... .. .+...+.++++|++++ +...+.|+.-++|.+++++.++..+
T Consensus 26 ~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~ 105 (443)
T COG0038 26 AAALGVIVGLFAVALDLALLLLGRLRGGLLSAAQAPGPWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK 105 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC
Confidence 4455555555555555555554443321000 00 1112234567888888 3445679999999999999998743
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHH
Q 004505 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAAT 468 (748)
Q Consensus 389 ~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~ 468 (748)
.. ... .....|++.+.+++++|.+.|.+.|+.++|+++|..++++++. ...+.....++|+||.
T Consensus 106 ~~--~~~----~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~----------~~~~~r~Ll~~GaAaG 169 (443)
T COG0038 106 GR--ISP----RVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKL----------SREDRRILLAAGAAAG 169 (443)
T ss_pred Cc--ccH----HHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHH
Confidence 21 111 2345699999999999999999999999999999999987632 1246789999999999
Q ss_pred HHHhccchHHHHHHHHHHhc----CchhHHHHHHHHHHHHHHHHhhhc
Q 004505 469 LASVCSVPLTSVLLLFELTR----DYRILLPLMGAVGLAIWVPSVANQ 512 (748)
Q Consensus 469 la~~~~aPlt~~vl~~Eltg----~~~~llP~~~a~~~a~~v~~~~~~ 512 (748)
+++++++|+++++|++|+-. ++..+.|+++++++|+.+...++.
T Consensus 170 laaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~~ 217 (443)
T COG0038 170 LAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFGG 217 (443)
T ss_pred HHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999863 346899999999999999998864
No 62
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.41 E-value=2.8e-12 Score=115.93 Aligned_cols=113 Identities=25% Similarity=0.395 Sum_probs=97.0
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
++++++++++++.++++.|.+.+++.+||+|++++++|+++.+|+.+.+.+... ....++.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~-----------~~~~~v~~~~~~~~- 68 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL-----------YDLVVASDIMTKPP- 68 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc-----------cccEEHHHhccCCC-
Confidence 357889999999999999999999999999998999999999999887543221 12357889998776
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+.+||+|+ ++++++|++|.+|+++
T Consensus 69 --------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-------~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 69 --------VVVYPEDSLEDALKKFEDSDYEQLPVVDD-------DPGKLLGILSRSDLLS 113 (114)
T ss_pred --------cEEcCCCCHHHHHHHHhhCCccEeeEEeC-------CCCEEEEEEEhHHhhc
Confidence 89999999999999999999999999982 1478999999999875
No 63
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=3.1e-12 Score=120.53 Aligned_cols=121 Identities=22% Similarity=0.293 Sum_probs=96.9
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCC----------CC--ccccccch
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKG----------DS--IASDVNTC 649 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~----------~~--~~~~~~~~ 649 (748)
+++++++++++.++++.|.+++++.+||+|++++++|+++..|+++...........+ +. ......+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 4678999999999999999999999999999999999999999998754321100000 00 00001245
Q ss_pred hhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 650 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 650 ~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
+++++|++++ .++.+++++.++++.|.+++.+++||++ +++++|+||++|+++
T Consensus 82 ~v~~~~~~~~---------~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---------~~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTEEI---------ITVSPNDDVVDAAKLMLEANISGLPVVD---------NDNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCCCC---------eEECCCCCHHHHHHHHHHcCCCEEEEEe---------CCEEEEEEEHHHHhh
Confidence 7899998766 8999999999999999999999999999 589999999999875
No 64
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.40 E-value=4.1e-12 Score=113.99 Aligned_cols=107 Identities=25% Similarity=0.411 Sum_probs=94.1
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++..++++.++.++++.|.++++.++||+|++++++|+++.+|+.+.... ..+++++|.++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------------~~~v~~~~~~~~- 64 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE----------------AKSLEDIMLEDV- 64 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc----------------CCcHhHhhcCCc-
Confidence 467789999999999999999999999999988999999999999875321 235788887766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+++||+++ +|+++|++|++|+++
T Consensus 65 --------~~v~~~~~~~~~~~~~~~~~~~~~~vv~~--------~g~~~Gvit~~~l~~ 108 (109)
T cd04583 65 --------FTVQPDASLRDVLGLVLKRGPKYVPVVDE--------DGKLVGLITRSSLVD 108 (109)
T ss_pred --------eEECCCCcHHHHHHHHHHcCCceeeEECC--------CCeEEEEEehHHhhc
Confidence 89999999999999999999999999996 789999999999875
No 65
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=1.7e-12 Score=120.31 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=91.3
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCc--cccccchhhhhhhhcCc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSI--ASDVNTCLVSSICTRGI 659 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~--~~~~~~~~V~dim~~~~ 659 (748)
++.++++++++.++++.|.+++++.+||+|++++++|+++..|+++............... ..........+.|.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR-- 79 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC--
Confidence 4678999999999999999999999999999999999999999988753222100000000 000000011123333
Q ss_pred cccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 660 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 660 ~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
++.++++++++.+++++|.+++.+++||+|+ +++++|+||++|+++
T Consensus 80 -------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--------~~~~~Giit~~dil~ 125 (126)
T cd04642 80 -------PLITCTPSSTLKEVITKLVANKVHRVWVVDE--------EGKPIGVITLTDIIS 125 (126)
T ss_pred -------CCeEECCCCcHHHHHHHHHHhCCcEEEEECC--------CCCEEEEEEHHHHhc
Confidence 3489999999999999999999999999995 689999999999976
No 66
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.3e-12 Score=116.72 Aligned_cols=112 Identities=22% Similarity=0.261 Sum_probs=95.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++.+.|.+++.+.+||+|++++++|+|+..|+.+.+...... ...+.++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~---------~~~~~~v~~~~~~~~-- 70 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH---------CDGVATVRDIMTTEV-- 70 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc---------cCCCccHHHHhccCc--
Confidence 567899999999999999988888999999999999999999999865432210 012456889998766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 71 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~Gvit~~di~~ 113 (114)
T cd04629 71 -------LTVSPDDSIVDLAQLMLKAKPKRYPVVD---------DGKLVGQISRRDVLR 113 (114)
T ss_pred -------eEECCCCcHHHHHHHHHHhCCCccCEEE---------CCEEEEEEEHHHHhc
Confidence 8899999999999999999999999999 489999999999975
No 67
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=4.8e-12 Score=114.06 Aligned_cols=108 Identities=25% Similarity=0.355 Sum_probs=94.7
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
++++++++++++.++.+.|.+++++++||+|+ ++++|+++..|+.+.+.... ...++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~-------------~~~~~~~~~~~~~- 66 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL-------------GHAPVKDYMSTDV- 66 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc-------------ccCcHHHHhcCCC-
Confidence 46788999999999999999888999999998 89999999999988653221 2456889998766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.+++++|.+++.+.+||+| +|+++|+||++|+++
T Consensus 67 --------~~v~~~~~l~~~~~~~~~~~~~~~~V~~---------~~~~~Gvvt~~di~~ 109 (110)
T cd04595 67 --------VTVPPDTPLSEVQELMVEHDIGRVPVVE---------DGRLVGIVTRTDLLR 109 (110)
T ss_pred --------EEECCCCcHHHHHHHHHHcCCCeeEEEe---------CCEEEEEEEhHHhhc
Confidence 8999999999999999999999999998 589999999999875
No 68
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3e-12 Score=116.39 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+++++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.+...... ........+++++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~v~~~~~~~~-- 73 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL------DLERLVDLKVIDVMNTDV-- 73 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch------hHHHHhCCcHHHHhcCCC--
Confidence 578899999999999999999999999999889999999999999875432110 000001356889998776
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+.+ .+||+|+ +++++|+||++|+++
T Consensus 74 -------~~v~~~~~l~~a~~~~~~~~--~~~Vv~~--------~~~~~Gvit~~dil~ 115 (116)
T cd04643 74 -------PVIIDDADIEEILHLLIDQP--FLPVVDD--------DGIFIGIITRREILK 115 (116)
T ss_pred -------ceecCCCCHHHHHHHHhcCC--ceeEEeC--------CCeEEEEEEHHHhhc
Confidence 89999999999999998865 5999996 789999999999875
No 69
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.40 E-value=3.4e-12 Score=115.46 Aligned_cols=111 Identities=33% Similarity=0.399 Sum_probs=96.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+++++++++++.++.+.|.+.+++.+||+|++++++|+++..++.+.+..... ....++.++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~-----------~~~~~v~~~~~~~~-- 69 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD-----------ILTLPVADVMTRNP-- 69 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc-----------cccCCHHHhhccCC--
Confidence 56788999999999999988888999999998999999999999987654322 12346889998766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++...+||+|+ +++++|+||.+||++
T Consensus 70 -------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~iG~it~~di~~ 113 (114)
T cd04604 70 -------KTIDPDALAAEALELMEENKITALPVVDD--------NGRPVGVLHIHDLLR 113 (114)
T ss_pred -------eEECCCCcHHHHHHHHHHcCCCEEEEECC--------CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999996 789999999999975
No 70
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.40 E-value=1.8e-12 Score=136.87 Aligned_cols=114 Identities=27% Similarity=0.357 Sum_probs=101.5
Q ss_pred hhhhhhccccC-ceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchh
Q 004505 572 ELKVSRAMSKD-FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL 650 (748)
Q Consensus 572 ~l~V~diM~~~-~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 650 (748)
.++|+|+|.++ ++++++++++.++++.|.+.+++++||+|++++++|+|+.+|+.+.+..... .+.+
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~------------~~~~ 221 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS------------LKSE 221 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc------------ccCc
Confidence 47899999998 9999999999999999999999999999999999999999999886432211 2456
Q ss_pred hhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEE
Q 004505 651 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILH 714 (748)
Q Consensus 651 V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt 714 (748)
++++|.+++ .++++++++.+|++.|.+++.+.+||+|+ +|+++|+|+
T Consensus 222 v~~im~~~~---------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~g~l~GvI~ 268 (268)
T TIGR00393 222 VRDFMTLGP---------KTFKLDALLLEALEFLERRKITSLVVVDD--------HNKVLGVLH 268 (268)
T ss_pred HHHhCCCCC---------eEECCCCcHHHHHHHHHHcCCcEEEEECC--------CCeEEEEEC
Confidence 999998877 89999999999999999999999999996 789999985
No 71
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.40 E-value=2.1e-12 Score=144.50 Aligned_cols=187 Identities=20% Similarity=0.212 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------C-chhHHHhhhHHHHHHHH-hhcccccccChhhHHHHHhcCCCC
Q 004505 319 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFG------L-PPVVCPALGGLGAGIIA-LRYPGILYWGFTNVEEILHTGKTA 390 (748)
Q Consensus 319 Gi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l~gl~~g~~~-~~~p~~~g~G~~~i~~~l~~~~~~ 390 (748)
|++.|+++.+|..++++..++++.+-+... . ...+.+.+.+++.+.+. .+.|+..++|.++++..++..+..
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~ 80 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHLP 80 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCccc
Confidence 567788888888888888777664432211 1 11233444444544444 478999999999998887643221
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHh------hhCCCCCCCcchHHHHHHH
Q 004505 391 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIIN------SAIPGNVAVAEPQAYALVG 464 (748)
Q Consensus 391 ~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~------~~~p~~~~~~~~~~~a~~G 464 (748)
..... ..++.|++.+.+++|+|.+.|.++|++.+||++|..+++......+ +.+. +..+...+..||
T Consensus 81 ~~l~~----~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~---~~~~~r~ll~aG 153 (416)
T cd01036 81 MYLSI----RTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFR---NPRDRRDFLVAG 153 (416)
T ss_pred ccccH----HHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhcc---CHHHHHHHHHHH
Confidence 11122 2356899999999999999999999999999999999886532110 0001 124567899999
Q ss_pred HHHHHHHhccchHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHhhhc
Q 004505 465 MAATLASVCSVPLTSVLLLFELTRD---YRILLPLMGAVGLAIWVPSVANQ 512 (748)
Q Consensus 465 aaA~la~~~~aPlt~~vl~~Eltg~---~~~llP~~~a~~~a~~v~~~~~~ 512 (748)
+||.++++++||++++++.+|.+.. ...+.|+++++++|..+.+.+..
T Consensus 154 aaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~ 204 (416)
T cd01036 154 AAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNS 204 (416)
T ss_pred hhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998742 35788999999999999887743
No 72
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.40 E-value=5.1e-12 Score=113.76 Aligned_cols=109 Identities=25% Similarity=0.307 Sum_probs=94.8
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++++++++.++.+.|.+++++++||+|+ ++++|+++.+|+++....... ..++.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~v~~~~~~~~- 65 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE-------------LAKVKDVMTKDV- 65 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc-------------ccCHHHHhcCCc-
Confidence 35778999999999999999999999999998 899999999999987543221 256888887666
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 66 --------~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~i~~~dl~~ 109 (110)
T cd04588 66 --------ITIDEDEQLYDAIRLMNKHNVGRLIVTDD--------EGRPVGIITRTDILR 109 (110)
T ss_pred --------eEECCCCCHHHHHHHHHhcCCCEEEEECC--------CCCEEEEEEhHHhhc
Confidence 89999999999999999999999999985 689999999999874
No 73
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.39 E-value=2.5e-12 Score=121.00 Aligned_cols=132 Identities=54% Similarity=0.889 Sum_probs=96.3
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.+|++.|.+++++++||+|++++++|+||.+|+++.+.....................+.++|++...+
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 57899999999999999999999999999999999999999999988654322100000000111223455666532211
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEE
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAIL 713 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGII 713 (748)
..+..+++++++++++.+|++.|.+++++.+||+|++...++++..+++|++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~~~~~~~~~~~~~ 133 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDRRRRGRRKVLGLL 133 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCccccccccccccC
Confidence 1112244899999999999999999999999999987777777777888753
No 74
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.4e-12 Score=117.73 Aligned_cols=119 Identities=22% Similarity=0.222 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
++.++++++++.++++.|.++++.++||+|++ ++++|+|+..|+++.+..+.......+. .......+.++|.+++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~- 78 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDP--LYPIPLRDLTIGTSDV- 78 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhh--hhhhhhhhcccCcCCc-
Confidence 56789999999999999998889999999987 8999999999998875432110000000 0000112234566555
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIW 719 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll 719 (748)
.++++++++.+|++.|.+++.+++||+|+ +++++|+||.+|+-
T Consensus 79 --------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~~vGiit~~di~ 121 (123)
T cd04627 79 --------ISINGDQPLIDALHLMHNEGISSVAVVDN--------QGNLIGNISVTDVR 121 (123)
T ss_pred --------eEeCCCCCHHHHHHHHHHcCCceEEEECC--------CCcEEEEEeHHHhh
Confidence 89999999999999999999999999996 78999999999974
No 75
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.39 E-value=2.7e-12 Score=144.33 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=108.7
Q ss_pred HhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccc
Q 004505 567 EMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 646 (748)
Q Consensus 567 ~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~ 646 (748)
...++.+++.++|.++++++.+++|+.|+++.|.+++++.+||+|+ ++++|+||.+|+... .
T Consensus 82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~-----~------------ 143 (475)
T TIGR01303 82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV-----D------------ 143 (475)
T ss_pred HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC-----C------------
Confidence 4457889999999999999999999999999999999999999884 789999999998432 0
Q ss_pred cchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 647 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 647 ~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
...+++++|++++ +++++++++.+|+++|.+++++.+||+|+ +++++|+||++||++....
T Consensus 144 ~~~~V~dIMt~~l---------itv~~~~sL~eAl~lM~~~~i~~LPVVD~--------~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 144 RFTQVRDIMSTDL---------VTAPADTEPRKAFDLLEHAPRDVAPLVDA--------DGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCCCHHHHccCCc---------eEeCCCCcHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHHHHhC
Confidence 1246999999877 99999999999999999999999999996 7899999999999986554
No 76
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=4.4e-12 Score=115.27 Aligned_cols=110 Identities=25% Similarity=0.367 Sum_probs=91.7
Q ss_pred CceEecCCCCHHHHHHHHHcCC-CCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
++.++++++++.++++.|.+++ ...++|+| +++++|+++.+|+++.+..... ..+.++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~-----------~~~~~i~~~~~~~~- 68 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD-----------LSDLPIGEVMTQPV- 68 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC-----------ccccCHHHhcCCCc-
Confidence 5678899999999999998877 66777777 5899999999999986543211 12356888998766
Q ss_pred ccCCCCCceeeCCC--CCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPD--TDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d--~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.++ +++.+++++|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 69 --------~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~--------~~~~~Gvit~~dl~~ 114 (115)
T cd04620 69 --------VTLQESEIQDIFTALSLFRQHQIRHLPVLDD--------QGQLIGLVTAESIRQ 114 (115)
T ss_pred --------EEEecccccCHHHHHHHHHHhCCceEEEEcC--------CCCEEEEEEhHHhhc
Confidence 788887 78999999999999999999996 789999999999975
No 77
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.39 E-value=5.6e-12 Score=113.71 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=92.5
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++..|+.+....... ..++.++|. +.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~-------------~~~~~~~~~-~~- 66 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE-------------DLDLRDLLR-PP- 66 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC-------------cCCHHHHhc-CC-
Confidence 57789999999999999999889999999988 999999999999987543211 134566653 34
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 67 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~di~~ 110 (111)
T cd04590 67 --------LFVPESTPLDDLLEEMRKERSHMAIVVDE--------YGGTAGLVTLEDILE 110 (111)
T ss_pred --------eecCCCCcHHHHHHHHHhcCCcEEEEEEC--------CCCEEEEeEHHHhhc
Confidence 78999999999999999999999999995 789999999999874
No 78
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.8e-12 Score=116.88 Aligned_cols=120 Identities=29% Similarity=0.369 Sum_probs=97.7
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++.+++++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+....... ...........++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~-- 77 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN--GEESLTKERDVPVAEVMKTDV-- 77 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc--cccccccccCcCHHHhhCCCC--
Confidence 5678999999999999999999999999998899999999999998754322100 000001123556888987766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+.+||+|+ +++++|+||+.|+++
T Consensus 78 -------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~dl~~ 121 (122)
T cd04803 78 -------LTVTPDTPLREAAEIMVENKIGCLPVVDD--------KGTLVGIITRSDFLR 121 (122)
T ss_pred -------eEeCCCCcHHHHHHHHHHcCCCeEEEEcC--------CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999995 689999999999875
No 79
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.39 E-value=6.2e-12 Score=141.68 Aligned_cols=180 Identities=19% Similarity=0.191 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhhHHHHHHHH-hhcccccccChhhHHHHHhcCCCCCCchHHH
Q 004505 319 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIA-LRYPGILYWGFTNVEEILHTGKTASAPGIWL 397 (748)
Q Consensus 319 Gi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~~g~~~-~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~ 397 (748)
|++.|+++.++.....|+...+....+. ..+++.+.+.+++++.+. .+.|...|+|-++++..++........+.+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~- 77 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCNY--IIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKW- 77 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccccccccHH-
Confidence 6788999999999888887765432211 111223345556666665 568999999999998887642211112223
Q ss_pred HHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchH
Q 004505 398 LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPL 477 (748)
Q Consensus 398 l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPl 477 (748)
..+.|++.+.+++++|.+.|.+.|++.+||++|..++++++.. + . +..+...+..||+||.+++++++|+
T Consensus 78 ---~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~-~---~---~~~~~r~li~~GaaAGlaAaF~APi 147 (445)
T cd03684 78 ---TLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKY-R---R---NEAKRREILSAAAAAGVAVAFGAPI 147 (445)
T ss_pred ---HHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHh-c---c---CHHHHHHHHHHHHhhhhHHhcCCcc
Confidence 3668999999999999999999999999999999998865421 0 1 1246778999999999999999999
Q ss_pred HHHHHHHHHh-c--CchhHHHHHHHHHHHHHHHHhhh
Q 004505 478 TSVLLLFELT-R--DYRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 478 t~~vl~~Elt-g--~~~~llP~~~a~~~a~~v~~~~~ 511 (748)
+++++.+|.. . +...++|.++++++|..+.+.++
T Consensus 148 ~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~ 184 (445)
T cd03684 148 GGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLN 184 (445)
T ss_pred chhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999975 3 34678899999999999988774
No 80
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=2.9e-12 Score=120.33 Aligned_cols=122 Identities=28% Similarity=0.351 Sum_probs=96.5
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCC------CCC-----ccccccch
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK------GDS-----IASDVNTC 649 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~------~~~-----~~~~~~~~ 649 (748)
+++.++++++++.++++.|.+++++++||+|++++++|+++.+|+.+........... ... ........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 5678899999999999999999999999999989999999999998764322100000 000 00001235
Q ss_pred hhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 650 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 650 ~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
++.++|.+++ .++++++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~l~Vvd---------~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTRPV---------VTVGEDTPLAEVAELMEEHRIKRVPVVR---------GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCCCc---------eEeCCCCcHHHHHHHHHHcCCCccCEec---------CCEEEEEEEhHhhhc
Confidence 6888887766 8999999999999999999999999998 589999999999875
No 81
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.38 E-value=7.3e-12 Score=112.96 Aligned_cols=110 Identities=26% Similarity=0.340 Sum_probs=94.1
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+..... ..+.++.++|.+++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-----------~~~~~i~~~~~~~~- 67 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL-----------DPDTPVSEVMTAPP- 67 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC-----------CccCCHHHHhCCCC-
Confidence 35778999999999999999888999999997 899999999999875433211 12356888887766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++.+.+||++ +++++|++|++|+++
T Consensus 68 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~Giit~~di~~ 110 (111)
T cd04800 68 --------ITIPPDATVFEALLLMLERGIHHLPVVD---------DGRLVGVISATDLLR 110 (111)
T ss_pred --------eEECCCCcHHHHHHHHHHcCCCeeeEeE---------CCEEEEEEEHHHhhc
Confidence 8999999999999999999999999999 489999999999875
No 82
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.38 E-value=2.8e-12 Score=145.16 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=102.1
Q ss_pred hhhhhccc---cCceEecCCCCHHHHHHHHHcCCCCEEEEEeC---CCcEEEEEeHHHHHHHHhcccCCCCCCCCccccc
Q 004505 573 LKVSRAMS---KDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 646 (748)
Q Consensus 573 l~V~diM~---~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~ 646 (748)
.+|+++|. .+.+++++++|+.||++.|.+++++.+||+|+ +++++|+||.+|+.... . .
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~-------------~ 158 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M-------------S 158 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c-------------C
Confidence 45777775 45679999999999999999999999999997 58999999999996421 0 1
Q ss_pred cchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHH
Q 004505 647 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 722 (748)
Q Consensus 647 ~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l 722 (748)
.+.+|+++|++.. +++++++++++.+|+++|.+++++.+||+|+ +++++|+||++|+++..
T Consensus 159 ~~~~V~dIMt~~~-------~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~--------~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 159 LDTKVKDFMTPFE-------KLVTANEGTTLKEANDIIWDHKLNTLPIVDK--------NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCHHHHhCCCC-------CeEEECCCCcHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEhHHHHhcc
Confidence 3567999999632 2389999999999999999999999999996 78999999999998853
No 83
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=3.7e-12 Score=112.55 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=85.7
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
++++++++++++.+|++.|.+++++.+||+|++++++|+++.+|+.+.. . +
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------~----------~- 51 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS------------------E----------V- 51 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------C----------c-
Confidence 3678899999999999999999999999999999999999999998631 0 2
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.+++++|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 52 --------~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--------~~~~~Giit~~di~~ 95 (96)
T cd04614 52 --------VTATKRTTVSECAQKMKRNRIEQIPIING--------NDKLIGLLRDHDLLK 95 (96)
T ss_pred --------EEecCCCCHHHHHHHHHHhCCCeeeEECC--------CCcEEEEEEHHHhhc
Confidence 78999999999999999999999999995 689999999999875
No 84
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=4.9e-12 Score=117.35 Aligned_cols=114 Identities=19% Similarity=0.220 Sum_probs=91.2
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHH-----hcccCCCCCCCCccccccchhhhhhhh
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL-----SKLSSDNSKGDSIASDVNTCLVSSICT 656 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l-----~~~~~~~~~~~~~~~~~~~~~V~dim~ 656 (748)
++.++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.. ..... .....+++++|+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~----------~~~~~~v~~im~ 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGI----------SRSELTVADVMT 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCC----------CchheEHHHhcC
Confidence 467899999999999999988999999999889999999999998621 11100 012456889998
Q ss_pred cCccccCCCCCceee----CCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCC-CeEEEEEEHhHHHH
Q 004505 657 RGISYRGRERGLLTC----YPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRK-QRIVAILHYDSIWN 720 (748)
Q Consensus 657 ~~~~~~~~~~~~~~v----~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~-g~lvGIIt~~Dll~ 720 (748)
++. ....+ .+++++.++++.|.+++.+.+||+|+ + |+++|+||++|+++
T Consensus 72 ~~~-------~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--------~~~~~~G~it~~di~~ 125 (126)
T cd04640 72 PKE-------DLKALDLEELENASVGDVVETLKASGRQHALVVDR--------EHHQIRGIISTSDIAR 125 (126)
T ss_pred chh-------hhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--------CCCEEEEEEeHHHHhh
Confidence 654 01222 36899999999999999999999995 5 78999999999875
No 85
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.37 E-value=8.6e-12 Score=112.28 Aligned_cols=109 Identities=25% Similarity=0.353 Sum_probs=94.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++++.|.+++++.+||+|+ ++++|+++.+|+.+....... .+.+++++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~------------~~~~v~~~~~~~~-- 66 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD------------LQTPVGEVMSSPL-- 66 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC------------CCcCHHHhcCCCc--
Confidence 4678999999999999999988999999987 899999999999987543211 2456888888766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 67 -------~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~--------~~~~~Gvi~~~di~~ 110 (111)
T cd04611 67 -------LTVPADTSLYDARQLMREHGIRHLVVVDD--------DGELLGLLSQTDLLQ 110 (111)
T ss_pred -------eEECCCCCHHHHHHHHHHcCCeEEEEECC--------CCcEEEEEEhHHhhc
Confidence 89999999999999999999999999995 689999999999875
No 86
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.3e-12 Score=118.08 Aligned_cols=121 Identities=28% Similarity=0.344 Sum_probs=95.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCC--------CC-Cccccccchhhh
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK--------GD-SIASDVNTCLVS 652 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~--------~~-~~~~~~~~~~V~ 652 (748)
++.++++++++.++.+.|.+.+++++||+|++++++|+++..|+.+.+......... .+ .........++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 567899999999999999988999999999999999999999999876433210000 00 000000112678
Q ss_pred hhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 653 SICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 653 dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
++|.+++ ..+.+++++.+++++|.+.+.+.+||+| +++++|++|++|+++
T Consensus 82 ~~~~~~~---------~~v~~~~~l~~~~~~~~~~~~~~~~V~~---------~~~~iGvit~~dl~~ 131 (132)
T cd04636 82 EIMTKKV---------ITVDEDTTIEDVARIMSKKNIKRLPVVD---------DGKLVGIISRGDIIR 131 (132)
T ss_pred HhccCCc---------eEECCCCcHHHHHHHHHHCCCCeeEEEE---------CCEEEEEEEHHHhhc
Confidence 8887766 8999999999999999999999999999 489999999999975
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9.5e-12 Score=112.38 Aligned_cols=110 Identities=19% Similarity=0.381 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+++++++++++.++++.|.+++...++|.| +++++|+++.+|+.+.+..... +....+++++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~-- 68 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA----------GVLDTTVRAIMNPEP-- 68 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC----------chhcCCHHHHhCCCC--
Confidence 567899999999999999888877777665 5899999999999987543211 012356889998766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.+++++|.+++.+.+||+| +++++|+||++|+++
T Consensus 69 -------~~v~~~~~l~~a~~~m~~~~~~~l~Vv~---------~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 69 -------IVASPDDSIDEVRRLMVERHLRYLPVLD---------GGTLLGVISFHDVAK 111 (112)
T ss_pred -------eEECCCCCHHHHHHHHHHcCCCeeeEEE---------CCEEEEEEEHHHhhc
Confidence 8899999999999999999999999998 589999999999975
No 88
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.37 E-value=5.3e-12 Score=143.51 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=106.5
Q ss_pred HhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccc
Q 004505 567 EMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 646 (748)
Q Consensus 567 ~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~ 646 (748)
...|+.++++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+||.+|+.+.+..... .
T Consensus 329 ~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----------~ 397 (454)
T TIGR01137 329 FDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA-----------N 397 (454)
T ss_pred HHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC-----------C
Confidence 44599999999999999999999999999999999999999999988999999999999987543221 1
Q ss_pred cchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHH
Q 004505 647 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 722 (748)
Q Consensus 647 ~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l 722 (748)
.+.++.++|++++ .++++++++.+++++|.+++ .|||++ +++++|+||++|+++.+
T Consensus 398 ~~~~v~~im~~~~---------~~v~~~~~l~~a~~~~~~~~---~~vV~~--------~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 398 PDDAVSKVMSKKF---------IQIGEGEKLSDLSKFLEKNS---SAIVTE--------EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCCCHHHhcCCCC---------eEECCcCcHHHHHHHHHHCC---eeEEEE--------CCEEEEEEEHHHHHHhh
Confidence 2346899998766 89999999999999998864 355554 68999999999999875
No 89
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.37 E-value=6.9e-12 Score=113.39 Aligned_cols=111 Identities=28% Similarity=0.397 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+++++.+++++.++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+.+..... .....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----------~~~~~~v~~i~~~~~-- 68 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL----------DPESTLVERVMTPNP-- 68 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC----------CcCcCCHHHhcCCCC--
Confidence 5678999999999999999888899999997 999999999999865332211 011256888988766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++.+++||+++ +++++|+||.+|++.
T Consensus 69 -------~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--------~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 69 -------VCATSDTPVLEALHLMVQGKFRHLPVVDK--------SGQVVGLLDVTKLTH 112 (113)
T ss_pred -------eEEcCCCCHHHHHHHHHHcCCCcccEECC--------CCCEEEEEEHHHhcc
Confidence 88999999999999999999999999995 689999999999874
No 90
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.1e-11 Score=112.17 Aligned_cols=111 Identities=29% Similarity=0.420 Sum_probs=93.5
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHH-HhcccCCCCCCCCccccccchhhhhhhhcCc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC-LSKLSSDNSKGDSIASDVNTCLVSSICTRGI 659 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~-l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~ 659 (748)
+++.++++++++.++.+.|.+++++++||+|+ ++++|+++..|++.. +..+.. ....++.++|.++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~ 68 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD-----------PDTTTVGDVMTRGV 68 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC-----------cccCCHHHhccCCc
Confidence 35778999999999999999999999999997 999999999998733 322111 12234888998766
Q ss_pred cccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 660 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 660 ~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 69 ---------~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~it~~di~~ 112 (113)
T cd04622 69 ---------VTVTEDDDVDEAARLMREHQVRRLPVVDD--------DGRLVGIVSLGDLAR 112 (113)
T ss_pred ---------cEECCCCCHHHHHHHHHHcCCCeeeEECC--------CCcEEEEEEHHHhhc
Confidence 88999999999999999999999999985 689999999999865
No 91
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=7.7e-12 Score=116.15 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=96.2
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCC--ccccccchhhhhhhhcCc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDS--IASDVNTCLVSSICTRGI 659 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~--~~~~~~~~~V~dim~~~~ 659 (748)
++.++++++++.++++.|.+.+++.+||+|++++++|++|.+|+.+.+..........+. ......+.++.++|+++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 567899999999999999999999999999999999999999998765322110000000 000112356888998766
Q ss_pred cccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 660 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 660 ~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
+++++++++.++++.|.+++...+||+++. ++++++|+||++|+++
T Consensus 82 ---------~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~------~~~~~~Gvit~~di~~ 127 (128)
T cd04632 82 ---------ITASPNDSVRDAVDRMLENDDSSVVVVTPD------DDTKVVGILTKKDVLR 127 (128)
T ss_pred ---------ceECCCCcHHHHHHHHHhCCCCeEeEeccC------CCCcEEEEEEhHhhhc
Confidence 899999999999999999999999998520 1589999999999875
No 92
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.36 E-value=9.6e-12 Score=111.97 Aligned_cols=110 Identities=30% Similarity=0.414 Sum_probs=94.4
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+....... ...++.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~------------~~~~~~~~~~~~~- 66 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE------------ATVLVGDVMTRDP- 66 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc------------cccCHHHhccCCC-
Confidence 35778999999999999999888999999998 999999999999876432211 1135778888766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++.+.+||+|+ +++++|+||..|+++
T Consensus 67 --------~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~it~~di~~ 110 (111)
T cd04612 67 --------VTASPDETLRDALKRMAERDIGRLPVVDD--------SGRLVGIVSRSDLLR 110 (111)
T ss_pred --------eEECCCCCHHHHHHHHHhCCCCeeeEEcC--------CCCEEEEEEHHHhhh
Confidence 89999999999999999999999999985 689999999999875
No 93
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.5e-12 Score=115.32 Aligned_cols=121 Identities=24% Similarity=0.289 Sum_probs=96.3
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++.+++++.++++.|.+++++++||+|++++++|+++..|+++.......... ... .......++.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~- 77 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVED-QQR-TQTKASPTVEKIMSTPV- 77 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccc-hhh-hhhhccCcHHHHhcCCC-
Confidence 357789999999999999998899999999998999999999999875211100000 000 00013456888887766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
..+++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 78 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--------~g~~~Gvit~~dl~~ 121 (122)
T cd04635 78 --------YSVTPDDSIATAVELMLEHDIGRLPVVNE--------KDQLVGIVDRHDVLK 121 (122)
T ss_pred --------eeECCCCCHHHHHHHHHHcCCCeeeEEcC--------CCcEEEEEEhHHhhc
Confidence 89999999999999999999999999996 789999999999875
No 94
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.34 E-value=1.3e-11 Score=112.79 Aligned_cols=120 Identities=28% Similarity=0.331 Sum_probs=96.0
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++++.|.+.+++.+||+|+ ++++|+++..|+.+............+. .......++.++|.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 77 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWEL-YYLLSKIKVSDIMTRDP-- 77 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhh-hhhhcccCHHHhccCCC--
Confidence 5678999999999999999999999999997 8999999999999875432110000000 00012356888887766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 78 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvvt~~di~~ 121 (122)
T cd04585 78 -------ITVSPDASVEEAAELMLERKISGLPVVDD--------QGRLVGIITESDLFR 121 (122)
T ss_pred -------eEeCCCCcHHHHHHHHHHcCCCceeEECC--------CCcEEEEEEHHHhhh
Confidence 89999999999999999999999999995 689999999999975
No 95
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=2e-11 Score=110.22 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++++.|.+.+.+.+||+|++ +++|+++.+|+++.+..... .....++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~~----------~~~~~~~~~~~~~~~-- 68 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRNL----------KPREVPVGEVMSTPL-- 68 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhccC----------CcccCCHHHhcCCCc--
Confidence 56789999999999999999899999999965 99999999999986533211 012446888987766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++.+.+||+|+ ++++|+||++|+++
T Consensus 69 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---------~~~~Gvi~~~di~~ 111 (112)
T cd04802 69 -------ITIDPNASLNEAAKLMAKHGIKRLPVVDD---------DELVGIVTTTDIVM 111 (112)
T ss_pred -------EEECCCCCHHHHHHHHHHcCCCeeEEeeC---------CEEEEEEEhhhhhc
Confidence 89999999999999999999999999994 49999999999874
No 96
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.34 E-value=6.6e-12 Score=139.03 Aligned_cols=128 Identities=21% Similarity=0.383 Sum_probs=114.8
Q ss_pred HhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcC-----CCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCC
Q 004505 567 EMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDG-----QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDS 641 (748)
Q Consensus 567 ~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~-----~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~ 641 (748)
-.....-+++.+|+.++++++++.|+.++++.+++. ....++|+|+++++.|+++.++++..
T Consensus 126 ~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a------------- 192 (451)
T COG2239 126 LLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA------------- 192 (451)
T ss_pred hcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC-------------
Confidence 334556789999999999999999999999999853 46789999999999999999999854
Q ss_pred ccccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 642 IASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 642 ~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
..+.+++++|.+.+ .++.++++.+++.++|++++.-.+||||+ +++++|+||.+|+++.
T Consensus 193 ----~~~~~i~~im~~~~---------~~V~~~~dqeevA~~~~~ydl~a~PVVd~--------~~~LiG~itiDDiidv 251 (451)
T COG2239 193 ----EPDELLKDLMEDDV---------VSVLADDDQEEVARLFEKYDLLAVPVVDE--------DNRLIGIITIDDIIDV 251 (451)
T ss_pred ----CcHhHHHHHhcccc---------eeecccCCHHHHHHHHHHhCCeecceECC--------CCceeeeeeHHHHHHH
Confidence 24678999999877 89999999999999999999999999997 8999999999999999
Q ss_pred HHHHHHh
Q 004505 722 LREEVNH 728 (748)
Q Consensus 722 l~~~~~~ 728 (748)
+.+|.++
T Consensus 252 i~eEa~e 258 (451)
T COG2239 252 IEEEATE 258 (451)
T ss_pred HHHHHHH
Confidence 9998765
No 97
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.33 E-value=1.4e-11 Score=110.14 Aligned_cols=100 Identities=23% Similarity=0.193 Sum_probs=88.4
Q ss_pred eEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccccC
Q 004505 584 VKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRG 663 (748)
Q Consensus 584 ~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~~ 663 (748)
+++++++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+.. ..++.++|.++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~------------------~~~~~~~~~~~~---- 60 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT------------------YGDVVDYIVRGI---- 60 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc------------------ccchhhhhhcCC----
Confidence 46899999999999999999999999998 9999999999998641 123677887665
Q ss_pred CCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 664 RERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 664 ~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++...+||+| +|+++|+||.+|+++
T Consensus 61 -----~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---------~~~~iGvit~~dl~~ 103 (104)
T cd04594 61 -----PYVRLTSTAEEAWEVMMKNKTRWCPVVD---------DGKFKGIVTLDSILD 103 (104)
T ss_pred -----cEEcCCCCHHHHHHHHHHcCcceEEEEE---------CCEEEEEEEHHHhhc
Confidence 8999999999999999999999999998 589999999999875
No 98
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=7.9e-12 Score=112.62 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=88.5
Q ss_pred ecCCCCHHHHHHHHHcCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 586 VALTVTLKEAIESMKDGQ-----QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 586 v~~~~tv~eal~~m~~~~-----~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+.+++++.++++.|.+++ +..+||+|++++++|+|+.+|+.+. . .+.+++++|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~-----~------------~~~~v~~~~~~~~- 63 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-----D------------PDTPVSDIMDTDV- 63 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC-----C------------CcchHHHHhCCCC-
Confidence 578999999999998776 4689999988999999999998752 0 1345888887766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
..+.+++++.++++.|.+++.+.+||+|+ +++++|+||++|+++.
T Consensus 64 --------~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~dll~~ 108 (109)
T cd04606 64 --------ISVSADDDQEEVARLFEKYDLLALPVVDE--------EGRLVGIITVDDVIDV 108 (109)
T ss_pred --------eEEcCCCCHHHHHHHHHHcCCceeeeECC--------CCcEEEEEEhHHhhhh
Confidence 89999999999999999999999999996 7899999999999875
No 99
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.33 E-value=1.5e-11 Score=111.85 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=90.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeC---CCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcC
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRG 658 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~ 658 (748)
++.++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|+..... ...+++++|.++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~----------------~~~~v~~~~~~~ 66 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD----------------SETPLSEVMTPR 66 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc----------------cCCCHHHhcCCC
Confidence 5678899999999999999888899999997 789999999999875311 123588999876
Q ss_pred ccccCCCCCceeeCC--CCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 659 ISYRGRERGLLTCYP--DTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 659 ~~~~~~~~~~~~v~~--d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
. .++.. ++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 67 ~---------~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~--------~~~~~Gvit~~di~~ 113 (114)
T cd04602 67 E---------VLVVAPTGITLEEANEILRESKKGKLPIVND--------DGELVALVTRSDLKK 113 (114)
T ss_pred c---------eEEECCCCCCHHHHHHHHHhcCCCceeEECC--------CCeEEEEEEHHHhhc
Confidence 5 56655 999999999999999999999985 789999999999875
No 100
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.32 E-value=1.6e-11 Score=110.12 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=90.8
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++.+.|.+++++++||+|+ ++++|+++.+|+.+.+..... ....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~-----------~~~~~~~~~~~~~~-- 67 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA-----------KFSLPVREVMGEPL-- 67 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc-----------ccCcCHHHHhcCCC--
Confidence 4678999999999999999999999999998 899999999999987543322 11356888887766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++.++|.+ .. .+||+++ +++++|+||++|+++
T Consensus 68 -------~~v~~~~~l~~~~~~~~~-~~-~~~vv~~--------~~~~~Gvvt~~di~~ 109 (110)
T cd04609 68 -------PTVDPDAPIEELSELLDR-GN-VAVVVDE--------GGKFVGIITRADLLK 109 (110)
T ss_pred -------ceeCCCCcHHHHHHHHHh-CC-ceeEEec--------CCeEEEEEeHHHhhc
Confidence 889999999999999988 33 4788885 789999999999975
No 101
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2e-11 Score=108.79 Aligned_cols=102 Identities=30% Similarity=0.438 Sum_probs=90.1
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++++.|.+++++.+||+| +++++|+++.+|+.+.. .+.++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~-----------------~~~~~~~~~~~~~-- 61 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH-----------------PNRLVADAMTREV-- 61 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc-----------------ccCCHHHHccCCC--
Confidence 467899999999999999988889999998 58999999999998641 1234788887766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIW 719 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll 719 (748)
.++++++++.++++.|.+++.+.+||+| +++++|+||.+|++
T Consensus 62 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~G~it~~~l~ 103 (105)
T cd04599 62 -------VTISPEASLLEAKRLMEEKKIERLPVLR---------ERKLVGIITKGTIA 103 (105)
T ss_pred -------EEECCCCCHHHHHHHHHHcCCCEeeEEE---------CCEEEEEEEHHHhc
Confidence 8999999999999999999999999999 58999999999986
No 102
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.32 E-value=1.3e-11 Score=139.09 Aligned_cols=121 Identities=22% Similarity=0.302 Sum_probs=106.5
Q ss_pred hhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCC---CcEEEEEeHHHHHHHHhcccCCCCCCCCccccc
Q 004505 570 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 646 (748)
Q Consensus 570 L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~ 646 (748)
-+-.+.++.|.++++++++++|+.|+++.|.+++++++||+|++ ++++|+||.+|+.....
T Consensus 77 ~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------------- 140 (450)
T TIGR01302 77 KRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------------- 140 (450)
T ss_pred hhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc----------------
Confidence 33456788999999999999999999999999999999999987 79999999999975310
Q ss_pred cchhhhhhhhc-CccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 647 NTCLVSSICTR-GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 647 ~~~~V~dim~~-~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
.+.+++++|++ ++ +++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++.+.
T Consensus 141 ~~~~V~dvm~~~~~---------~~V~~~~sl~eal~~m~~~~~~~lpVVDe--------~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 141 KGKPVSEVMTREEV---------ITVPEGIDLEEALKVLHEHRIEKLPVVDK--------NGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCCHHHhhCCCCC---------EEECCCCcHHHHHHHHHHcCCCeEEEEcC--------CCcEEEEEEhHHhhhccc
Confidence 13468999983 55 89999999999999999999999999996 899999999999998763
No 103
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=1.9e-11 Score=109.38 Aligned_cols=105 Identities=23% Similarity=0.389 Sum_probs=92.1
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++++++.++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+... . .+.+++++|.+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~-----~------------~~~~~~~~~~~~~- 62 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK-----D------------PDETVEEIMSKDL- 62 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc-----C------------ccccHHHhCCCCC-
Confidence 46788999999999999999888889999997 899999999999752 1 1345888987766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++.+.+||+++ +|+++|+|+.+|+++
T Consensus 63 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~g~~~Gvi~~~di~~ 106 (107)
T cd04610 63 --------VVAVPEMDIMDAARVMFRTGISKLPVVDE--------NNNLVGIITNTDVIR 106 (107)
T ss_pred --------eEECCCCCHHHHHHHHHHhCCCeEeEECC--------CCeEEEEEEHHHhhc
Confidence 88999999999999999999999999996 789999999999875
No 104
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.32 E-value=1.2e-11 Score=111.19 Aligned_cols=107 Identities=26% Similarity=0.296 Sum_probs=91.7
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+..... .+.++.++|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------------~~~~v~~~~~~~~- 64 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD----------------LDKPVSEVMTPEN- 64 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc----------------CCCCHHHhcccCc-
Confidence 46788999999999999999899999999998899999999999864310 1346888887655
Q ss_pred ccCCCCCceeeCC-CCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYP-DTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~-d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
..+.+ ++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 65 --------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvi~~~dil~ 109 (110)
T cd04601 65 --------LLTTVEGTSLEEALELLHEHKIEKLPVVDD--------EGKLKGLITVKDIEK 109 (110)
T ss_pred --------eEEecCCCCHHHHHHHHHHhCCCeeeEEcC--------CCCEEEEEEhhhhhc
Confidence 56666 999999999999999999999996 789999999999875
No 105
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.31 E-value=2.2e-11 Score=138.23 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=103.2
Q ss_pred hhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeC---CCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhh
Q 004505 576 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVS 652 (748)
Q Consensus 576 ~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~ 652 (748)
+..|.++++++++++|+.|+++.|.+++++.+||+|+ +++++|+||.+|+.... ..+.+|+
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----------------~~~~~V~ 166 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----------------DRETKLS 166 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc----------------ccCCcHH
Confidence 4458899999999999999999999999999999997 47999999999996531 1246799
Q ss_pred hhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 653 SICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 653 dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
++|+++. .++++++++++.+++++|.+++.+.+||+|+ +++++|+||++|+++.+..
T Consensus 167 eIMt~~~-------~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~--------~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 167 EVMTSDD-------DLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE--------DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred HHhccCC-------CcEEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHHHhhC
Confidence 9999762 2389999999999999999999999999996 7899999999999988764
No 106
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.1e-11 Score=111.97 Aligned_cols=120 Identities=22% Similarity=0.316 Sum_probs=95.7
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+++++++++++.++.+.|.+++++++||+|+ ++++|+++.+|+.+.+.+...... ...........++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 77 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAG-ETEKDLATLNRRAHQIMTRDP-- 77 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhcccc-chHHHHHHHHhHHHHhhcCCC--
Confidence 5678999999999999999999999999997 899999999999887543211000 000000012346888888766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++...+||+|+ +++++|++|++|+++
T Consensus 78 -------~~v~~~~~l~~~~~~~~~~~~~~~~vv~~--------~~~~~Gvit~~dll~ 121 (122)
T cd04637 78 -------ITVSPDTPVDEASKLLLENSISCLPVVDE--------NGQLIGIITWKDLLK 121 (122)
T ss_pred -------eeeCCCCcHHHHHHHHHHcCCCeEeEECC--------CCCEEEEEEHHHhhh
Confidence 89999999999999999999999999985 689999999999975
No 107
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.31 E-value=3e-11 Score=109.79 Aligned_cols=113 Identities=31% Similarity=0.431 Sum_probs=98.2
Q ss_pred hccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhh
Q 004505 577 RAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICT 656 (748)
Q Consensus 577 diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~ 656 (748)
++|.++++++.++.++.+|...|.++++..+||++++ +++|++|.+|+.+.+..... ...++.++|+
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~-~l~Giit~~di~~~~~~~~~------------~~~~v~~v~~ 69 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALAAGGK------------RLLPVKEVMT 69 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC-EEEEEEEHHHHHHHHhccCC------------ccccHHHhcc
Confidence 4555889999999999999999999999999999854 89999999999999655433 1116899999
Q ss_pred cCccccCCCCCceeeCCCCCHHHHHHHHHH-cCCCeeeEeeccchhhccCCC-eEEEEEEHhHHH
Q 004505 657 RGISYRGRERGLLTCYPDTDLAIAKELMEA-KGIKQLPVIKRSRELQRRRKQ-RIVAILHYDSIW 719 (748)
Q Consensus 657 ~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~-~~~~~lpVVd~~~~~~~~~~g-~lvGIIt~~Dll 719 (748)
++. .++.+++++.++.+.|.+ ++++.+||+|+ ++ +++|++|+.|++
T Consensus 70 ~~~---------~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--------~~~~lvGivt~~di~ 117 (117)
T COG0517 70 KPV---------VTVDPDTPLEEALELMVERHKIRRLPVVDD--------DGGKLVGIITLSDIL 117 (117)
T ss_pred CCc---------EEECCCCCHHHHHHHHHHHcCcCeEEEEEC--------CCCeEEEEEEHHHcC
Confidence 766 899999999999999999 79999999996 64 999999999973
No 108
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.30 E-value=2.5e-11 Score=138.26 Aligned_cols=118 Identities=26% Similarity=0.269 Sum_probs=105.4
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhh
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVS 652 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~ 652 (748)
..++++|.++++++++++++.|+++.|.+++++.+||+|++++++|+||.+|+.... ....+++
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~----------------~~~~~V~ 150 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET----------------DLSQPVS 150 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc----------------cCCCcHH
Confidence 458899999999999999999999999999999999999999999999999996431 1234689
Q ss_pred hhhh-cCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 653 SICT-RGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 653 dim~-~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
++|+ +++ +++++++++.++++.|.+++.+.+||+|+ +++++|+||++|+++.+.
T Consensus 151 dim~~~~~---------v~v~~~~sl~eal~~m~~~~~~~lpVVDe--------~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 151 EVMTKERL---------VTVPEGTTLEEALELLHEHRIEKLPVVDD--------NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred HHcCCCCC---------EEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCcEEEEEEhHHhhhhhh
Confidence 9998 555 89999999999999999999999999996 899999999999998763
No 109
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.29 E-value=1.9e-11 Score=138.74 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=105.0
Q ss_pred hhhhh-hhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCC---CcEEEEEeHHHHHHHHhcccCCCCCCCCcccc
Q 004505 570 LEELK-VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 645 (748)
Q Consensus 570 L~~l~-V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 645 (748)
.+.++ .++.|.++++++++++|+.|+++.|.+++++.+||+|++ ++++|+||.+|+... .
T Consensus 92 v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--~-------------- 155 (495)
T PTZ00314 92 VRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--K-------------- 155 (495)
T ss_pred HhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--c--------------
Confidence 33333 778899999999999999999999999999999999974 799999999999732 1
Q ss_pred ccchhhhhhhhc--CccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 646 VNTCLVSSICTR--GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 646 ~~~~~V~dim~~--~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
..+.+++++|++ ++ .++++++++.|++++|.+++.+.+||+|+ +++++|+||++|+++...
T Consensus 156 ~~~~~V~diMt~~~~l---------vtv~~~~sl~eAl~lm~e~~i~~LPVVd~--------~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 156 DKSTPVSEVMTPREKL---------VVGNTPISLEEANEVLRESRKGKLPIVND--------NGELVALVSRSDLKKNRG 218 (495)
T ss_pred cCCCCHHHhhCCcCCc---------eEeCCCCCHHHHHHHHHHcCCCeEEEEcC--------CCcEEEEEEehHhhhccc
Confidence 124579999986 45 89999999999999999999999999996 789999999999997643
No 110
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2.9e-11 Score=110.80 Aligned_cols=119 Identities=26% Similarity=0.317 Sum_probs=95.0
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++.+++++.++.+.|.+++.+.+||+|+ ++++|+++..|+.+.+......... ..........++.++|.++.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 77 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRD-RHQERRIRNLPVSDIMTRPV-- 77 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccc-hhhhhhhhccCHHHHccCCc--
Confidence 5778999999999999999889999999997 9999999999998865432110000 00011123456888887766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.+++++|.+.+.+.+||+| +++++|+||++|+++
T Consensus 78 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 78 -------ITIEPDTSVSDVASLMLENNIGGLPVVD---------DGKLVGIVTRTDILR 120 (121)
T ss_pred -------eEECCCCcHHHHHHHHHHcCCCcccEEE---------CCEEEEEEEHHHhhc
Confidence 8999999999999999999999999999 489999999999875
No 111
>PRK03655 putative ion channel protein; Provisional
Probab=99.29 E-value=1.6e-10 Score=128.55 Aligned_cols=181 Identities=13% Similarity=0.146 Sum_probs=126.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc---CCc---hhHHHhhhHHHHHHHHhhcccccccChhhHHH
Q 004505 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE-KF---GLP---PVVCPALGGLGAGIIALRYPGILYWGFTNVEE 382 (748)
Q Consensus 310 ~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~-~~---~~~---~~~~~~l~gl~~g~~~~~~p~~~g~G~~~i~~ 382 (748)
..+...+++|+++|+...+|.+++.+.++++-.... .. ..+ .+..+.++|+++|++..+.|..-+. +..+ +
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~-~~~~-~ 88 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGP-DPAT-E 88 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCC-hHHH-H
Confidence 445778999999999999999999998877532110 00 111 1233678899999998888755333 2222 3
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHH
Q 004505 383 ILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYAL 462 (748)
Q Consensus 383 ~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~ 462 (748)
..+.++ ... .....|++.+.+++++|.+.|.+.|++++||++|..+++.+. +. .+.....+
T Consensus 89 ~~~~~~----~~~----~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~-------~~----~~~~~l~~ 149 (414)
T PRK03655 89 PLIGAP----VPP----SALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLL-------PR----VNRMDWTI 149 (414)
T ss_pred HHhcCC----CCc----cHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc-------cC----CChhHHHH
Confidence 333332 111 234578999999999999999999999999999999987541 11 13455788
Q ss_pred HHHHHHHHHhccchHHHHHHHHHH-hcCchh-----HHHHHHHHHHHHHHHHhhh
Q 004505 463 VGMAATLASVCSVPLTSVLLLFEL-TRDYRI-----LLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 463 ~GaaA~la~~~~aPlt~~vl~~El-tg~~~~-----llP~~~a~~~a~~v~~~~~ 511 (748)
||+||.+++++|+|+++++|.+|. .+++.. .++.+++++++..++..++
T Consensus 150 ~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v~aa~~a~~v~~~~~ 204 (414)
T PRK03655 150 LASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPLMAAAAGALTTGLFF 204 (414)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999996 454432 2333345555666666553
No 112
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.28 E-value=4.5e-11 Score=109.42 Aligned_cols=119 Identities=27% Similarity=0.329 Sum_probs=95.3
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.+|.+.|.+.+++++||+|++++++|+++..|+.+............+ .......++.++|.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-- 77 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHE--LYLLLKMPVKEIMTKDV-- 77 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhh--hhhhcCcCHHHHhhCCC--
Confidence 46788999999999999999999999999998999999999999876432111000000 00123456888988766
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++...+||+| +++++|++|.+|+++
T Consensus 78 -------~~i~~~~~l~~~~~~~~~~~~~~~~V~~---------~~~~~Gvv~~~di~~ 120 (121)
T cd04584 78 -------ITVHPLDTVEEAALLMREHRIGCLPVVE---------DGRLVGIITETDLLR 120 (121)
T ss_pred -------eEECCCCcHHHHHHHHHHcCCCeEEEee---------CCEEEEEEEHHHhhc
Confidence 8999999999999999999999999998 488999999999875
No 113
>PRK11573 hypothetical protein; Provisional
Probab=99.27 E-value=2.9e-11 Score=134.61 Aligned_cols=134 Identities=11% Similarity=0.120 Sum_probs=110.8
Q ss_pred HHhhhhhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCc
Q 004505 566 EEMLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSI 642 (748)
Q Consensus 566 ~~~~L~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~ 642 (748)
.-..+++.+|+|+|++ +++.++.++++.|+++.+.+++++++||++++ ++++|+|..+|++....++..
T Consensus 180 ~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~-------- 251 (413)
T PRK11573 180 SVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE-------- 251 (413)
T ss_pred HHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc--------
Confidence 3445778999999988 79999999999999999999999999999865 799999999999975432211
Q ss_pred cccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHH
Q 004505 643 ASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 722 (748)
Q Consensus 643 ~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l 722 (748)
.....+.++++ ++.+|++++++.++++.|++++.+...|+|| .|...|+||.+||++.+
T Consensus 252 ---~~~~~l~~~~r----------~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE--------yG~~~GiVTleDilEei 310 (413)
T PRK11573 252 ---FTKENMLRAAD----------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE--------YGDIQGLVTVEDILEEI 310 (413)
T ss_pred ---CCHHHHHhhcc----------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec--------CCCeEEEeeHHHHHHHH
Confidence 01122444544 3379999999999999999999999999997 89999999999999999
Q ss_pred HHHHHh
Q 004505 723 REEVNH 728 (748)
Q Consensus 723 ~~~~~~ 728 (748)
..++..
T Consensus 311 vGei~d 316 (413)
T PRK11573 311 VGDFTT 316 (413)
T ss_pred hCCCCc
Confidence 877654
No 114
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=8.2e-11 Score=105.05 Aligned_cols=111 Identities=33% Similarity=0.435 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
++.++++++++.++.+.|.+++...+||+|++++++|+++.+|+.+....... .....+.++|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~-- 68 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGL-----------DPLVTVGDVMTRDV-- 68 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccC-----------CccccHHHHhcCCc--
Confidence 46788999999999999999889999999988999999999999987643322 01122667777666
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+.+...+||+|+ +++++|+++++|+++
T Consensus 69 -------~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~i~~~dl~~ 112 (113)
T cd02205 69 -------VTVSPDTSLEEAAELMLEHGIRRLPVVDD--------EGRLVGIVTRSDILR 112 (113)
T ss_pred -------eecCCCcCHHHHHHHHHHcCCCEEEEEcC--------CCcEEEEEEHHHhhc
Confidence 88999999999999999999999999996 799999999999875
No 115
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.25 E-value=6.5e-11 Score=106.37 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=87.6
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeC---CCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcC
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRG 658 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~ 658 (748)
+...+++++++.++.+.+.+.+++.+||+|+ +++++|+|+.+|+.+.... +|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~----------------------~m~~~ 60 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN----------------------YIDPS 60 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH----------------------hccCC
Confidence 4677899999999999999988889999998 6899999999999876211 66665
Q ss_pred ccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 659 ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 659 ~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
+ .++++++++.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus 61 ~---------~~v~~~~~l~~~~~~~~~~~~~~~pVv~---------~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 61 P---------FTVSPRTSLEKVHQLFRKLGLRHLLVVD---------EGRLVGIITRKDLLK 104 (105)
T ss_pred C---------ceECCCCcHHHHHHHHHHcCCCEEEEEE---------CCeEEEEEEhhhhhc
Confidence 5 7999999999999999999999999997 689999999999875
No 116
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=8.1e-11 Score=111.92 Aligned_cols=121 Identities=26% Similarity=0.362 Sum_probs=94.8
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCC---CC-----Ccc---------
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK---GD-----SIA--------- 643 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~---~~-----~~~--------- 643 (748)
++++++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+......... .. ...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 35788999999999999999999999999997 8999999999999876432210000 00 000
Q ss_pred ----ccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHH
Q 004505 644 ----SDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIW 719 (748)
Q Consensus 644 ----~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll 719 (748)
.+....++.++|.+++ .++++++++.++++.|.+.+...+||++ +++++|+||++|++
T Consensus 80 ~~~~~~~~~~~v~~~~~~~~---------~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---------~~~~~Gvvt~~dl~ 141 (143)
T cd04634 80 KRALTDAGKMKVRDIMTKKV---------ITISPDASIEDAAELMVRHKIKRLPVVE---------DGRLVGIVTRGDII 141 (143)
T ss_pred HHHHHHHhcCCHHHHcCCCC---------eEECCCCcHHHHHHHHHHcCCCEEEEEE---------CCEEEEEEEHHHhh
Confidence 0002345777777655 8999999999999999999999999999 47899999999987
Q ss_pred H
Q 004505 720 N 720 (748)
Q Consensus 720 ~ 720 (748)
+
T Consensus 142 ~ 142 (143)
T cd04634 142 E 142 (143)
T ss_pred c
Confidence 4
No 117
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=1.2e-10 Score=106.24 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHcCC-CCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++++++++++.++.+.|.+.+ ++.+||+|+ ++++|+++.+|+.+.+..... .....+.++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~--------~~~~~~~~v~~~~~~~~- 71 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYG--------RALYGKKPVSEVMDPDP- 71 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhh--------HHHHcCCcHHHhcCCCc-
Confidence 5678899999999999998876 889999998 999999999999876543110 00012346889998766
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCC---eeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIK---QLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~---~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++++++++.++++.|.+++.+ ..||+++ +|+++|+||++|+++
T Consensus 72 --------~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~--------~~~~~Gvvs~~di~~ 118 (119)
T cd04598 72 --------LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE--------EGRYLGIGTVKDLLR 118 (119)
T ss_pred --------EEecCCCCHHHHHHHHHcCCcccccccEEEee--------CCeEEEEEEHHHHhc
Confidence 8999999999999999998864 4468875 799999999999875
No 118
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.6e-10 Score=103.46 Aligned_cols=104 Identities=29% Similarity=0.364 Sum_probs=90.0
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 661 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 661 (748)
+..++++++++.++++.|.+.+++.+||+|++++++|+++.+++.+.. .+.++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-----------------~~~~~~~~~~~~~-- 62 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-----------------EEEQLALLMTRDP-- 62 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc-----------------ccchHHHHhcCCC--
Confidence 467889999999999999988899999999889999999999997520 1234677887666
Q ss_pred cCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 662 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 662 ~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
.++.+++++.++++.|.+++.+.+||+| +++++|+||.+|+++
T Consensus 63 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---------~~~~~G~it~~d~~~ 105 (106)
T cd04638 63 -------PTVSPDDDVKEAAKLMVENNIRRVPVVD---------DGKLVGIVTVADIVR 105 (106)
T ss_pred -------ceECCCCCHHHHHHHHHHcCCCEEEEEE---------CCEEEEEEEHHHhhc
Confidence 8899999999999999999999999999 469999999999875
No 119
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.21 E-value=6.1e-11 Score=137.76 Aligned_cols=135 Identities=24% Similarity=0.309 Sum_probs=108.5
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCC-----------------
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSD----------------- 635 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~----------------- 635 (748)
.+|+|+|.++++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+.+.+......
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L 147 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTL 147 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999864432100
Q ss_pred ----------CC---------------------C------CCC---------------------c---------------
Q 004505 636 ----------NS---------------------K------GDS---------------------I--------------- 642 (748)
Q Consensus 636 ----------~~---------------------~------~~~---------------------~--------------- 642 (748)
.. . ++. .
T Consensus 148 ~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ 227 (546)
T PRK14869 148 DGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVT 227 (546)
T ss_pred CcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCe
Confidence 00 0 000 0
Q ss_pred ----ccc--------ccchhhhhhhh-cCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeE
Q 004505 643 ----ASD--------VNTCLVSSICT-RGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRI 709 (748)
Q Consensus 643 ----~~~--------~~~~~V~dim~-~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~l 709 (748)
..| ..+.+|+++|+ +++ .++++++++.++.+.|.+++.+.+||+|+ +|++
T Consensus 228 ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~---------~~~~~~~~~~~~~~~m~~~~~~~~PVvd~--------~g~l 290 (546)
T PRK14869 228 VISTPYDTFTTARLINQSIPVSYIMTTEDL---------VTFSKDDYLEDVKEVMLKSRYRSYPVVDE--------DGKV 290 (546)
T ss_pred EEEecccHHHHHHHhhcCCCHHHhccCCCc---------EEECCCCcHHHHHHHHHhcCCCceEEEcC--------CCCE
Confidence 000 12345667776 555 89999999999999999999999999996 8999
Q ss_pred EEEEEHhHHHHHHHH
Q 004505 710 VAILHYDSIWNCLRE 724 (748)
Q Consensus 710 vGIIt~~Dll~~l~~ 724 (748)
+|+||++|+++...+
T Consensus 291 vGiit~~dl~~~~~~ 305 (546)
T PRK14869 291 VGVISRYHLLSPVRK 305 (546)
T ss_pred EEEEEHHHhhccccC
Confidence 999999999986553
No 120
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.13 E-value=3.7e-10 Score=124.01 Aligned_cols=140 Identities=30% Similarity=0.378 Sum_probs=110.5
Q ss_pred hhHHHHHHHHhhc-ccccccChhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHH
Q 004505 357 LGGLGAGIIALRY-PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAV 435 (748)
Q Consensus 357 l~gl~~g~~~~~~-p~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~ 435 (748)
+++++++++..++ |+.-++|-+++++.++..+.. .+ ....+.|++.+.+++++|.+.|.+.|+..+|+++|+.
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~~--~~----~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~ 74 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSGR--LP----FRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSW 74 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----H----HHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCCC--CC----HHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHH
Confidence 4577778877776 999999999998888755421 11 2346789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCcc-hHHHHHHHHHHHHHHhccchHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHHhhh
Q 004505 436 FGGSAAEIINSAIPGNVAVAE-PQAYALVGMAATLASVCSVPLTSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 436 ~g~~l~~~~~~~~p~~~~~~~-~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg---~~~~llP~~~a~~~a~~v~~~~~ 511 (748)
+++.++. +. .+ ...+..||++|.+++++++|++++++.+|... ++..++|.++++++|+.+.+.+.
T Consensus 75 ~~~~~~~------~~----~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 144 (355)
T PF00654_consen 75 LGRRFRL------SR----NETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLF 144 (355)
T ss_dssp HHHHTT--------C----HHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcc------cc----hHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHc
Confidence 9876431 11 13 55699999999999999999999999999864 56899999999999999999885
Q ss_pred c
Q 004505 512 Q 512 (748)
Q Consensus 512 ~ 512 (748)
.
T Consensus 145 ~ 145 (355)
T PF00654_consen 145 G 145 (355)
T ss_dssp T
T ss_pred C
Confidence 3
No 121
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.09 E-value=5.8e-10 Score=125.38 Aligned_cols=133 Identities=19% Similarity=0.189 Sum_probs=110.0
Q ss_pred HHhhhhhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEe-CCCcEEEEEeHHHHHHHHhcccCCCCCCCCc
Q 004505 566 EEMLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKLSSDNSKGDSI 642 (748)
Q Consensus 566 ~~~~L~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd-~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~ 642 (748)
.-..+.+.+|+++|++ ++..++.+.+++++.+.+.+++|+++||+| +.+.++|+++.+|++........
T Consensus 199 ~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-------- 270 (429)
T COG1253 199 NVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-------- 270 (429)
T ss_pred HHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--------
Confidence 3445788999999987 788999999999999999999999999999 45799999999999998544321
Q ss_pred cccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHH
Q 004505 643 ASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 722 (748)
Q Consensus 643 ~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l 722 (748)
.......+. +++.|++.+++.++++.|++++.+...|+|| .|.+.|+||.+||++.+
T Consensus 271 -----~~~~~~~~~----------~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE--------yG~~~GlVTleDIiEeI 327 (429)
T COG1253 271 -----DLDLRVLVR----------PPLFVPETLSLSDLLEEFREERTHMAIVVDE--------YGGVEGLVTLEDIIEEI 327 (429)
T ss_pred -----ccchhhccc----------CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc--------CCCeEEEeEHHHHHHHH
Confidence 000111111 3389999999999999999999999999997 89999999999999999
Q ss_pred HHHHHhh
Q 004505 723 REEVNHR 729 (748)
Q Consensus 723 ~~~~~~~ 729 (748)
..++..+
T Consensus 328 vGei~de 334 (429)
T COG1253 328 VGEIPDE 334 (429)
T ss_pred hCCCcCc
Confidence 8766543
No 122
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.3e-09 Score=114.31 Aligned_cols=130 Identities=14% Similarity=0.158 Sum_probs=110.0
Q ss_pred hhhhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCcccc
Q 004505 569 LLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 645 (748)
Q Consensus 569 ~L~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 645 (748)
.+++++|+|+|.+ ++..++.|++.++..+.+.+..|.++|+..++ ++.+|++..+|+++++.+.+.
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----------- 264 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----------- 264 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----------
Confidence 4788999999987 78899999999999999999999999999765 679999999999999776542
Q ss_pred ccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHH
Q 004505 646 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 725 (748)
Q Consensus 646 ~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~ 725 (748)
.....+..+.. ++.+|++.+++.+-+..|.+++-+.-.|||| .|.+.|+||.+||++.+..+
T Consensus 265 ~~k~d~~~~a~----------epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--------YG~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 265 FTKEDILRAAD----------EPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--------YGDIQGLVTLEDILEEIVGD 326 (423)
T ss_pred ccHhHHHHHhc----------CCeecCCCCcHHHHHHHHHHhcceEEEEEec--------cCcEEeeeeHHHHHHHHhcc
Confidence 11222333333 3379999999999999999999999999997 99999999999999998876
Q ss_pred HH
Q 004505 726 VN 727 (748)
Q Consensus 726 ~~ 727 (748)
..
T Consensus 327 ft 328 (423)
T COG4536 327 FT 328 (423)
T ss_pred cc
Confidence 65
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.83 E-value=1e-08 Score=81.03 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=53.0
Q ss_pred hhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 004505 575 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 629 (748)
Q Consensus 575 V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l 629 (748)
|+++|+++++++++++++.++.+.|.+++++++||+|++++++|++|.+|+++++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 6799999999999999999999999999999999999999999999999999875
No 124
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.81 E-value=1.3e-08 Score=100.35 Aligned_cols=133 Identities=13% Similarity=0.189 Sum_probs=112.0
Q ss_pred Hhhhhhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHHHHhcccCCCCCCCCcc
Q 004505 567 EMLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIA 643 (748)
Q Consensus 567 ~~~L~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 643 (748)
.....+++|+|+|.+ +.+++..+.++.+.+..+.+..|+++||+.++ +.+.|++-.+||++.+.....
T Consensus 61 vm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~--------- 131 (293)
T COG4535 61 VMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE--------- 131 (293)
T ss_pred HHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc---------
Confidence 445677999999987 68999999999999999999999999999765 589999999999998654322
Q ss_pred ccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 644 SDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 644 ~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
.-.++++..+ .+.|++.-.+...++-|+.++.+...|+|+ .|-+-|+||..|+++.+.
T Consensus 132 ----~F~i~~lLRP----------av~VPESKrvd~lLkeFR~~RnHMAIViDE--------fGgVsGLVTIEDiLEqIV 189 (293)
T COG4535 132 ----PFDIKELLRP----------AVVVPESKRVDRLLKEFRSQRNHMAIVIDE--------FGGVSGLVTIEDILEQIV 189 (293)
T ss_pred ----cccHHHhccc----------ceecccchhHHHHHHHHHhhcCceEEEEec--------cCCeeeeEEHHHHHHHHh
Confidence 1235555543 368999999999999999999999999997 899999999999999998
Q ss_pred HHHHhhh
Q 004505 724 EEVNHRK 730 (748)
Q Consensus 724 ~~~~~~~ 730 (748)
.+++.+-
T Consensus 190 GdIEDE~ 196 (293)
T COG4535 190 GDIEDEY 196 (293)
T ss_pred ccccccc
Confidence 7766543
No 125
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.78 E-value=3.7e-08 Score=108.19 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=100.7
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchh-hhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL-VSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~-V~dim~~~~~ 660 (748)
++..+..++++.+|++.|.+.+++.+||||++++.+|.++..|+.......... ..... +++......
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~----------~~~~~~l~~~~~~~~- 306 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYN----------NLDLSCLSEALSHRP- 306 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccC----------ccchhHHHHHhhhcc-
Confidence 688999999999999999999999999999999999999999999876554431 11122 333322211
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEV 726 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~~ 726 (748)
....++++|++++++.++++.|.+++++++.|||+ +|+++|+||..|++.++..+.
T Consensus 307 --~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~--------~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 307 --IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE--------DGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred --cccCccEEEeecchHHHHHHHHHhcCceEEEEEcC--------CCcEEEEeeHHHHHHHHHhCc
Confidence 11123599999999999999999999999999996 799999999999999988654
No 126
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.74 E-value=2.8e-08 Score=78.60 Aligned_cols=56 Identities=32% Similarity=0.508 Sum_probs=51.9
Q ss_pred hhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 651 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 651 V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
|+++|++++ .++++++++.++++.|.+++.+++||+|+ +++++|+||++|+++++.
T Consensus 1 v~~~m~~~~---------~~v~~~~~l~~~~~~~~~~~~~~~~V~d~--------~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPP---------ITVSPDDSLEEALEIMRKNGISRLPVVDE--------DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSS---------EEEETTSBHHHHHHHHHHHTSSEEEEEST--------TSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCC---------EEEcCcCcHHHHHHHHHHcCCcEEEEEec--------CCEEEEEEEHHHHHhhhh
Confidence 568888877 99999999999999999999999999996 899999999999999874
No 127
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.70 E-value=1.9e-07 Score=102.33 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=96.2
Q ss_pred ccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhc
Q 004505 578 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTR 657 (748)
Q Consensus 578 iM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~ 657 (748)
.|........++.+..++++.|...+.+...|+|+++++.|.++.+++....... ..+.+.|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~ 310 (363)
T TIGR01186 247 RMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA----------------QGLQDVLID 310 (363)
T ss_pred hccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC----------------Cchhhhhcc
Confidence 3444455667788999999999999999999999999999999999998765432 236666766
Q ss_pred CccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHH
Q 004505 658 GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 725 (748)
Q Consensus 658 ~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~ 725 (748)
.. .++++++++.+++..|.+++.. +||+|+ +|+++|+||+.++++.+.+.
T Consensus 311 ~~---------~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--------~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 311 DI---------YTVDAGTLLRETVRKVLKAGIK-VPVVDE--------DQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CC---------ceECCCCcHHHHHHHHHhCCCC-EEEECC--------CCcEEEEEEHHHHHHHHHhh
Confidence 55 7899999999999999999998 999996 89999999999999998764
No 128
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=2.5e-07 Score=102.61 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=97.3
Q ss_pred hhhhhccccCc---eEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccch
Q 004505 573 LKVSRAMSKDF---VKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTC 649 (748)
Q Consensus 573 l~V~diM~~~~---~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~ 649 (748)
+++.++|.+.. +...++.+..++++.|.+.+.+.++|+|+++++.|+++.+++.+..... .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ----------------Q 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC----------------C
Confidence 56777775532 2334677899999999999999999999999999999999997664321 2
Q ss_pred hhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHH
Q 004505 650 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 725 (748)
Q Consensus 650 ~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~ 725 (748)
.+.+.+.+.. .++.+++++.+++..|.+.... +||||+ +|+++|+||+.++++.+.+.
T Consensus 338 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--------~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAALIDAP---------LAVDAQTPLSELLSHVGQAPCA-VPVVDE--------DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhhccCC---------ceeCCCCCHHHHHHHHHhCCCc-EEEECC--------CCcEEEEEEHHHHHHHHHhc
Confidence 3666666555 7999999999999999998776 999996 89999999999999998653
No 129
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.51 E-value=8.2e-08 Score=108.68 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=99.5
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhh
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLV 651 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V 651 (748)
+.+++++|+++++++++++++.|+++.|+++++..+||||++|+++|+||.+|+.+.+.+. ..
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~-----------------~~ 256 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE-----------------AT 256 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh-----------------hH
Confidence 4579999999999999999999999999999999999999999999999999999886542 13
Q ss_pred hhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHHHHh
Q 004505 652 SSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNH 728 (748)
Q Consensus 652 ~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~~~~ 728 (748)
+|+|+... .+..+++++.++...|.+++...++|.- +.|+++ ..+++.+.+.++.
T Consensus 257 ed~~~~~g---------v~~~~~~~l~~~~~~~~~~R~~wL~v~~------------~~~~~t-~~ii~~f~~~l~~ 311 (449)
T TIGR00400 257 EDFYMIAA---------VKPLDDSYFDTSILVMAKNRIIWLLVLL------------VSSTFT-ATIISNYEDLLLS 311 (449)
T ss_pred HHHHHhcC---------CCCCcchhhhchHHHHHHhccchHHHHH------------HHHHHH-HHHHHHHHHHHHH
Confidence 67777654 4555678889999999999999999875 788998 7788777665543
No 130
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.48 E-value=4.5e-07 Score=96.12 Aligned_cols=108 Identities=25% Similarity=0.283 Sum_probs=95.6
Q ss_pred cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCC---CcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhc
Q 004505 581 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTR 657 (748)
Q Consensus 581 ~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~ 657 (748)
.+++.++|+.|+.++++.-..+++..+||.++. .+++|+||.+|+... + .....++|+|++
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~---------------~~~~~~~~vmt~ 179 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E---------------DNSLLVSDVMTK 179 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h---------------cccchhhhhccc
Confidence 367889999999999999999999999999753 589999999999765 1 135679999998
Q ss_pred CccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 658 GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 658 ~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
+. .+.+.+.+++++-+++++++-..+||||+ +++++-+|+++|+.+.
T Consensus 180 ~~---------~~~~~gi~l~~~neiL~~~kkGkl~iv~~--------~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 180 NP---------VTGAQGITLKEANEILKKIKKGKLPVVDD--------KGELVAMLSRTDLMKN 226 (503)
T ss_pred cc---------ccccccccHHHHHHHHHhhhcCCcceecc--------CCceeeeeehhhhhhh
Confidence 77 78889999999999999999999999997 8999999999999764
No 131
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.40 E-value=4.2e-07 Score=100.95 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhh------cCCchhHHH----hhhHHHHHHHHhhccccccc
Q 004505 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSF-----DFIKEK------FGLPPVVCP----ALGGLGAGIIALRYPGILYW 375 (748)
Q Consensus 311 ~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~-----~~~~~~------~~~~~~~~~----~l~gl~~g~~~~~~p~~~g~ 375 (748)
-|.++.++|++.|++|.+-+.....+..+. ..+.+. +....+++. .+..+...++.++.|-..|+
T Consensus 87 kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGS 166 (762)
T KOG0474|consen 87 KWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGS 166 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCC
Confidence 356678999999999998877765543221 111111 101111111 11111112233567999999
Q ss_pred ChhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHH---HhhhCCCCC
Q 004505 376 GFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEI---INSAIPGNV 452 (748)
Q Consensus 376 G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~---~~~~~p~~~ 452 (748)
|.++++--++.-+. |++. .+.-++.|.+....+.+.|.-.|-++|++-.||++|+.+++-=..- -..+++-.-
T Consensus 167 GIPevK~YLNGV~i---P~iv-rl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~Fr 242 (762)
T KOG0474|consen 167 GIPEVKCYLNGVKI---PGIV-RLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFR 242 (762)
T ss_pred CCchhhhhhcCccC---ccee-ehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhc
Confidence 99999877754332 2221 2234578999999999999999999999999999999887531100 011222222
Q ss_pred CCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHH
Q 004505 453 AVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY---RILLPLMGAVGLAIWVPS 508 (748)
Q Consensus 453 ~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~---~~llP~~~a~~~a~~v~~ 508 (748)
+..+.+-+..||+||..+|++|||+.+++|.+|---++ .++.-++++++++.++-+
T Consensus 243 nDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 243 NDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred ccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 34578889999999999999999999999999965433 467777777776666655
No 132
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.23 E-value=1.9e-06 Score=86.55 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=56.8
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHh
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 630 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~ 630 (748)
.+.+|+|+|+++++++.+|+.+.||+++|.++++.++.|+|++|+++|++|+.|+++.+.
T Consensus 232 ~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 232 LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 458999999999999999999999999999999999999999999999999999998753
No 133
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.18 E-value=2.4e-06 Score=79.64 Aligned_cols=61 Identities=28% Similarity=0.454 Sum_probs=55.0
Q ss_pred chhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHHH
Q 004505 648 TCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEV 726 (748)
Q Consensus 648 ~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~~ 726 (748)
....+.+|++++ +.|.||+++.++.++|.++++.++||++ +++++|-||.+||.+..-+..
T Consensus 64 ~ita~~iM~spv---------v~v~pdDsi~~vv~lM~~~g~SQlPVi~---------~~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 64 RITAKTIMHSPV---------VSVSPDDSISDVVNLMRDKGISQLPVIE---------EDKVVGSITENDIVRALLEGM 124 (187)
T ss_pred eEeHhhhccCCe---------eEECchhhHHHHHHHHHHcCCccCceee---------CCeeeeeecHHHHHHHHhccc
Confidence 455788999888 9999999999999999999999999999 689999999999999886543
No 134
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.17 E-value=1.2e-06 Score=89.36 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=63.8
Q ss_pred EeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccc
Q 004505 620 LTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSR 699 (748)
Q Consensus 620 Vt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~ 699 (748)
|+++|+.+.+.+.+.. ...+...+....|+|++++ +++++|+++.+|.++|.+++++.+||+|+
T Consensus 221 IdrddLe~llr~~elq-----a~~R~~~~LtcadIMSrdV---------vtv~~~ts~dhA~~ll~~H~ikaLPV~d~-- 284 (382)
T COG3448 221 IDRDDLERLLRETELQ-----ALRRRMGELTCADIMSRDV---------VTVSTDTSIDHARKLLQEHRIKALPVLDE-- 284 (382)
T ss_pred CCHHHHHHHHHHHHHH-----HHHHHhccccHHHhcCccc---------eecCCcCChHHHHHHHHHcCccccccccc--
Confidence 5667776665432210 0001123556789999988 99999999999999999999999999997
Q ss_pred hhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 700 ELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 700 ~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
+.+++||||++|+.+..+.
T Consensus 285 ------~~rl~GiVt~~dl~~~a~~ 303 (382)
T COG3448 285 ------HRRLVGIVTQRDLLKHARP 303 (382)
T ss_pred ------ccceeeeeeHHHHhhccCc
Confidence 8899999999999985443
No 135
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.15 E-value=1.7e-05 Score=90.07 Aligned_cols=174 Identities=22% Similarity=0.253 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----Cch-hHHHhhhHHH---HHHHHhhcccccccChhhH
Q 004505 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG-----LPP-VVCPALGGLG---AGIIALRYPGILYWGFTNV 380 (748)
Q Consensus 310 ~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~gl~---~g~~~~~~p~~~g~G~~~i 380 (748)
.+|.+.+++|++-+++++..-..+..+.+....+.+... +.+ .|.....+++ .++.-+..|+..|+|.+.+
T Consensus 94 eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEm 173 (931)
T KOG0476|consen 94 EDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEM 173 (931)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhH
Confidence 567788899999999999888777766665544433221 111 1212222222 2233346799999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHH
Q 004505 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAY 460 (748)
Q Consensus 381 ~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~ 460 (748)
+.+++.-.. .-++-.--++.|++...+++|+|+|-|-.+|-.-|++.+...++.+..-.+...+ .+ ...-.-+
T Consensus 174 KtIlrGv~L----keYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~~-en--esR~~Em 246 (931)
T KOG0476|consen 174 KTILRGVIL----KEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGFF-EN--ESRNMEM 246 (931)
T ss_pred HHHHHhhhH----HhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccccc-cC--cchHHHH
Confidence 988874321 1123334578999999999999999999999999999999999887642222222 22 1222344
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhcCc
Q 004505 461 ALVGMAATLASVCSVPLTSVLLLFELTRDY 490 (748)
Q Consensus 461 a~~GaaA~la~~~~aPlt~~vl~~Eltg~~ 490 (748)
-.+|.|-..|..+.||++++++-+|.|..|
T Consensus 247 LaaaCAVGVactFsAPiGgVLfSIEvTS~y 276 (931)
T KOG0476|consen 247 LAAACAVGVACTFSAPIGGVLFSIEVTSTY 276 (931)
T ss_pred HHHHhhhhheeeecCccceeEEEEEEeeee
Confidence 555666677888999999999999998644
No 136
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.07 E-value=1.9e-06 Score=100.30 Aligned_cols=134 Identities=17% Similarity=0.217 Sum_probs=96.3
Q ss_pred hhhhhhhhhccc-cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccC--CCCCCCCc--c
Q 004505 569 LLEELKVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS--DNSKGDSI--A 643 (748)
Q Consensus 569 ~L~~l~V~diM~-~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~--~~~~~~~~--~ 643 (748)
.-...+|+++|+ ++++++++++++.++.+.|.+++++.+||+|++|+++|+||.+|+.+...++.. +....... .
T Consensus 242 l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~ 321 (546)
T PRK14869 242 INQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEG 321 (546)
T ss_pred hhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccc
Confidence 345678999999 899999999999999999999999999999999999999999999986432110 00000000 0
Q ss_pred cc-------ccchhhhhhhhcCccccCCCCCceee---CCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEE
Q 004505 644 SD-------VNTCLVSSICTRGISYRGRERGLLTC---YPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAIL 713 (748)
Q Consensus 644 ~~-------~~~~~V~dim~~~~~~~~~~~~~~~v---~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGII 713 (748)
.+ ...-+++++|++++ +.+ +...+...+.++|.++++...|++. ...+.||+
T Consensus 322 ~~~~~i~~iiDHH~~~~~~~~~p---------i~~~~~~~gst~tiv~~~~~~~~i~~~~~ia---------~~ll~gIl 383 (546)
T PRK14869 322 IEEAEILEIIDHHRLGDIQTSNP---------IFFRNEPVGSTSTIVARMYRENGIEPSPEIA---------GLLLAAIL 383 (546)
T ss_pred hhhceEEEEecCCccCCCCCCCC---------cEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH---------HHHHHHHH
Confidence 00 00123445555443 333 3356778899999999999999887 45689999
Q ss_pred EHhHHHH
Q 004505 714 HYDSIWN 720 (748)
Q Consensus 714 t~~Dll~ 720 (748)
+-++.++
T Consensus 384 sDT~~f~ 390 (546)
T PRK14869 384 SDTLLFK 390 (546)
T ss_pred HHhcCcc
Confidence 8887664
No 137
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.07 E-value=5.6e-06 Score=74.67 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=51.8
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++.+++++.+|++.|.+++.+.+||+|++++++|+||.+|+.+
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 4689999999999999999999999999999999999998899999999999975
No 138
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.01 E-value=1.1e-05 Score=73.33 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=52.1
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.+++|+|.+++.++++++++.++++.|.++++..+||+|++++++|+|+.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 7799999999999999999999999999999999999999999999999999864
No 139
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.93 E-value=1.6e-05 Score=71.99 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=52.8
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...+++++|.++++++.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 346789999999999999999999999999999999999998899999999999864
No 140
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77 E-value=5.3e-05 Score=68.90 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=50.5
Q ss_pred chhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 648 TCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 648 ~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
..+++++|.+++ .++++++++.++++.|.+.+.+.+||+|+ +++++|+||.+|+.+
T Consensus 57 ~~~v~dim~~~~---------~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--------~~~l~Givt~~dl~~ 112 (113)
T cd04597 57 HPRVRDVINRKP---------VTARPNDPLREALNLMHEHNIRTLPVVDD--------DGTPAGIITLLDLAE 112 (113)
T ss_pred hhhHHHhcCCCC---------CEECCcCcHHHHHHHHHHcCCCEEEEECC--------CCeEEEEEEHHHhhc
Confidence 467999998776 89999999999999999999999999996 789999999999864
No 141
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.76 E-value=0.0001 Score=81.26 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=96.5
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEe-CCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCcc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 660 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd-~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 660 (748)
+++.+.+..++-++...+.+++++++||.| +.+++..++|.+-+++.+........ .......++.|+-.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-----~~~~l~~s~~dl~i---- 233 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-----LPSLLSKSLSDLGI---- 233 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----cHHHhhCCHHHhCc----
Confidence 448899999999999999999999999999 55799999999999998766544110 01111222332211
Q ss_pred ccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 661 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 661 ~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
+....+..++.++++.+|+++|.++++..+||||+ +|+.+|++++.|+.....+
T Consensus 234 --g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~--------~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 234 --GTWSNIASISEDTPVIEALKIMSERRISALPVVDE--------NGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred --chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC--------CCceecceehhhhhhhhhc
Confidence 12224689999999999999999999999999997 7788999999999887654
No 142
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.75 E-value=7.7e-05 Score=85.42 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=73.7
Q ss_pred hhhhhhccc-cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchh
Q 004505 572 ELKVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL 650 (748)
Q Consensus 572 ~l~V~diM~-~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 650 (748)
..++.++|. ++++++++++++.++++.|.+++.+.+||+|++++++|+||.+|+++.+..... .........
T Consensus 146 ~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a-------~~d~~g~l~ 218 (486)
T PRK05567 146 SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNA-------CKDEQGRLR 218 (486)
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCc-------ccccCCCEE
Confidence 357899998 789999999999999999999999999999999999999999999987532111 000011223
Q ss_pred hhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeec
Q 004505 651 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKR 697 (748)
Q Consensus 651 V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~ 697 (748)
|...|. ++++ + .+..+.|.+.+++. +|+|.
T Consensus 219 V~aai~--------------~~~~-~-~e~a~~L~~agvdv-ivvD~ 248 (486)
T PRK05567 219 VGAAVG--------------VGAD-N-EERAEALVEAGVDV-LVVDT 248 (486)
T ss_pred EEeecc--------------cCcc-h-HHHHHHHHHhCCCE-EEEEC
Confidence 444433 2232 2 66777788888884 46663
No 143
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.74 E-value=5.2e-05 Score=68.46 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=51.2
Q ss_pred hhhhhhccccCceEecCC--CCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALT--VTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~--~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.++.++|.++++++.++ +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 367889999999999887 78999999999999999999999899999999999975
No 144
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.72 E-value=6.8e-05 Score=68.75 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=48.8
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHH
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 626 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~ 626 (748)
.+.++|.+++.++++++++.+|++.|.+++.+.+||+|++++++|+||.+|+.
T Consensus 69 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 69 RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 34567888999999999999999999999999999999989999999999986
No 145
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.72 E-value=5e-05 Score=69.51 Aligned_cols=57 Identities=28% Similarity=0.333 Sum_probs=52.9
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...++.++|.++++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+.+
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 455789999999999999999999999999999999999999999999999999875
No 146
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.72 E-value=6.7e-05 Score=67.55 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=51.3
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|++.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 4688999999999999999999999999999999999998899999999999863
No 147
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.71 E-value=5e-05 Score=69.16 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=51.3
Q ss_pred hhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCC---CcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~DL~~ 627 (748)
...+++++|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+||..|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 45678899985 78899999999999999999999999999987 69999999999864
No 148
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.70 E-value=0.0002 Score=81.28 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=54.6
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHh
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 630 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~ 630 (748)
.+++++|+++++++++++++.||++.|.+++.+.+||+|++++++|+||.+|+++...
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999998744
No 149
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.70 E-value=6.3e-05 Score=68.26 Aligned_cols=57 Identities=32% Similarity=0.423 Sum_probs=53.0
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...++.++|.++++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 456789999999999999999999999999999999999998899999999999975
No 150
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.68 E-value=6.8e-05 Score=67.69 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=51.5
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.+.++.++|.++++++++++++.++++.|.+++...+||+|+ ++++|+|+..|+.+
T Consensus 58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 346789999999999999999999999999999999999997 89999999999875
No 151
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.68 E-value=8.5e-05 Score=66.73 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=53.2
Q ss_pred hhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 570 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 570 L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+...++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++|..|+.+
T Consensus 55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 4556899999999999999999999999999999999999998899999999999864
No 152
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67 E-value=8.8e-05 Score=66.25 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=52.1
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|++|..|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 45789999999999999999999999999999999999999999999999999874
No 153
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.66 E-value=0.00033 Score=79.50 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=55.1
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhc
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 631 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~ 631 (748)
.+++++|+++++++++++++.||++.|.+++.+.+||+|++++++|+||.+|+.+....
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 46999999999999999999999999999999999999999999999999999987443
No 154
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66 E-value=9.7e-05 Score=66.10 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=52.7
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 628 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~ 628 (748)
+.+++++|.+++..+.+++++.++++.|.+++...+||+|++++++|+||..|+++.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 457889999999999999999999999999999999999988999999999999864
No 155
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.66 E-value=0.0001 Score=66.06 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=50.7
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..+++++|.+++.++++++++.++++.|.+++...+||+| +++++|+||.+|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 4579999999999999999999999999999999999998 589999999999875
No 156
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.63 E-value=9.7e-05 Score=67.40 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=48.7
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...+.|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||..|+++
T Consensus 66 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 345667778899999999999999999999999999998899999999999875
No 157
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=0.00011 Score=65.13 Aligned_cols=55 Identities=29% Similarity=0.314 Sum_probs=51.2
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 4688999999999999999999999999999999999999999999999999874
No 158
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.60 E-value=0.00012 Score=65.69 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=51.5
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++++++++.++++.|.+++...+||+|++++++|+|+..|+++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 4699999999999999999999999999999999999998899999999999874
No 159
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.60 E-value=9.1e-05 Score=65.48 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=42.7
Q ss_pred ceEecCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHH
Q 004505 583 FVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKR 627 (748)
Q Consensus 583 ~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~ 627 (748)
+.++.+++++.+|++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7889999999999999999999999999987 89999999999875
No 160
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.59 E-value=0.00011 Score=67.11 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=52.8
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...++.++|.++++.+++++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 456788999999999999999999999999999999999998899999999999875
No 161
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.57 E-value=0.00014 Score=64.76 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=51.2
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|++|.+|+++
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 4688999999999999999999999999999999999999899999999999864
No 162
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00014 Score=65.10 Aligned_cols=55 Identities=29% Similarity=0.452 Sum_probs=51.1
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.++++++++++++.++++.|.+++...+||+|++++++|++|.+|+.+
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 4688999999999999999999999999999999999998899999999999864
No 163
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.56 E-value=0.00022 Score=81.46 Aligned_cols=58 Identities=24% Similarity=0.201 Sum_probs=54.2
Q ss_pred hhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 004505 571 EELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 628 (748)
Q Consensus 571 ~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~ 628 (748)
.+.+|+++|++ +++++++++++.||++.|.+++++.+||+|++++++|+||.+|+++.
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 45679999997 78999999999999999999999999999999999999999999986
No 164
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.56 E-value=0.00015 Score=64.73 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=52.4
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...+++++|.++++++++++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 456789999999999999999999999999999999999998899999999999874
No 165
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00014 Score=66.65 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=51.9
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..++.++|.++++++++++++.++++.|.+++.+.+||+|++++++|+||..|+.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 45788999999999999999999999999999999999998889999999999875
No 166
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00013 Score=66.41 Aligned_cols=57 Identities=32% Similarity=0.503 Sum_probs=52.7
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|++++++|++|..|+.+
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 456789999999999999999999999999999999999998889999999999874
No 167
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.55 E-value=0.00015 Score=65.56 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCC--CcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~--g~lvGiVt~~DL~~ 627 (748)
..++.++|.++++++.+++++.++++.|.+++...+||+|++ ++++|+||.+|+.+
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 57 PSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 345888999999999999999999999999999999999987 79999999999875
No 168
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.55 E-value=0.00016 Score=65.39 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=50.2
Q ss_pred hhhhhccccCceEecC--CCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVAL--TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~--~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.+++++|.++..++.. ++++.++++.|.+++...+||+|++++++|+||.+|+.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 4588999988888866 999999999999999999999998899999999999864
No 169
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.54 E-value=0.00011 Score=66.04 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=51.2
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+||..|++.
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 5789999999999999999999999999999999999998899999999999864
No 170
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.54 E-value=0.00018 Score=63.73 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=50.3
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+++++|.+++..+.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 588999988889999999999999999999999999998899999999999864
No 171
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.54 E-value=0.00011 Score=67.74 Aligned_cols=57 Identities=26% Similarity=0.388 Sum_probs=48.8
Q ss_pred hhhhhhhccccCceEe------cCCCCHHHHHHHHHcCCCCEEEEEeCC-CcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKV------ALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v------~~~~tv~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~DL~~ 627 (748)
.+.+++++|.+++..+ .+++++.|+++.|.+++.+.+||+|++ ++++|+||.+|+.+
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3567999998765443 368999999999999999999999987 79999999999975
No 172
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00017 Score=64.44 Aligned_cols=56 Identities=34% Similarity=0.337 Sum_probs=51.8
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...++.++|.+++..+++++++.++++.|.+++.+.+||+| +++++|+||..|+.+
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45779999999999999999999999999999999999999 789999999999864
No 173
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00025 Score=65.96 Aligned_cols=57 Identities=30% Similarity=0.379 Sum_probs=52.2
Q ss_pred hhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 570 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 570 L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ ++++|++|..|+++
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 4455899999999999999999999999999999999999998 99999999999875
No 174
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=0.00015 Score=66.00 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=52.5
Q ss_pred hhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 570 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 570 L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 4567899999999999999999999999999999999999997 89999999999875
No 175
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00016 Score=65.18 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=49.1
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.+++++|.+++.++++++++.++++.|.+.+ .+||+|++++++|++|.+|+++
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 56799999999999999999999999998754 5999999899999999999875
No 176
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.50 E-value=0.00021 Score=67.05 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=51.1
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..+++++|.+++..+.+++++.++++.|.+++.+.+||+|+ ++++|+||..|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45799999999999999999999999999999999999997 89999999999875
No 177
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.49 E-value=0.0002 Score=63.84 Aligned_cols=56 Identities=27% Similarity=0.421 Sum_probs=50.0
Q ss_pred hhhhhhccccCceEecC-CCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVAL-TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~-~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.++.++|.+++..+.+ ++++.++++.|.+++.+.+||+|++++++|+||.+|+++
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 35788999887777777 999999999999999999999998899999999999874
No 178
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.0002 Score=64.01 Aligned_cols=55 Identities=29% Similarity=0.465 Sum_probs=50.9
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..++.++|.+++..+++++++.++++.|.+++.+.+||+|+ ++++|+||..|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 45799999999999999999999999999999999999997 89999999999864
No 179
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.00015 Score=65.14 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=50.9
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..++.++|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 45788999999999999999999999999999999999997 89999999999975
No 180
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.48 E-value=0.00013 Score=68.06 Aligned_cols=56 Identities=30% Similarity=0.356 Sum_probs=51.9
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+.+
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 44679999999999999999999999999999999999999 899999999999874
No 181
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.46 E-value=0.00027 Score=63.01 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=51.3
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++..+.+++++.++++.|.+++.+.+||+|++++++|++|..|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 4688999999999999999999999999999999999998899999999999875
No 182
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.46 E-value=0.00023 Score=63.64 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=51.0
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.++.++|.++++.+++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 36788999999999999999999999999999999999997 89999999999874
No 183
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.46 E-value=0.00026 Score=63.16 Aligned_cols=55 Identities=31% Similarity=0.378 Sum_probs=51.0
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++..+++++++.++++.|.+.+...+||+|++++++|+|+.+|+.+
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 5688899999999999999999999999999999999998899999999999864
No 184
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.46 E-value=0.00015 Score=65.42 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=49.9
Q ss_pred hhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.++.++|.+ +++++.+++++.++++.|.+++.+.+||+|++++++|++|.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4578899975 3678999999999999999999999999998889999999999864
No 185
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.45 E-value=9.3e-05 Score=83.01 Aligned_cols=135 Identities=22% Similarity=0.182 Sum_probs=98.7
Q ss_pred hhcccccccChhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 004505 367 LRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINS 446 (748)
Q Consensus 367 ~~~p~~~g~G~~~i~~~l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~l~~~~~~ 446 (748)
.+.|...++|-++++..+.. ... ....-..-++.|-++..+++++|.+-|-++|++-++.++|.++.+++...
T Consensus 150 ~~AP~A~gSGIpEIK~ilSG-f~~---~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~--- 222 (696)
T KOG0475|consen 150 VVAPYACGSGIPEIKTILSG-FII---RGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKY--- 222 (696)
T ss_pred heehhhhcCCCccceeeecc-chh---hhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhh---
Confidence 46788889998887655532 211 11111223678999999999999999999999999999999998765321
Q ss_pred hCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHhhhc
Q 004505 447 AIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY---RILLPLMGAVGLAIWVPSVANQ 512 (748)
Q Consensus 447 ~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg~~---~~llP~~~a~~~a~~v~~~~~~ 512 (748)
. .+.+-.+-+..+.|||..+.+++||+++++|.+|-.-++ ..+.--..+++.|..+.+.+|.
T Consensus 223 ---~-~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~p 287 (696)
T KOG0475|consen 223 ---R-LNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSINP 287 (696)
T ss_pred ---c-cchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeecc
Confidence 1 112345566777888899999999999999999976422 3444556778888888777765
No 186
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.45 E-value=0.00024 Score=63.66 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=52.1
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeC-CCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG-EDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~-~g~lvGiVt~~DL~~ 627 (748)
..++.++|.+++.++++++++.++++.|.+.+...+||+|+ +++++|+++.+|+..
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 36899999999999999999999999999999999999998 789999999999864
No 187
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.00025 Score=64.66 Aligned_cols=56 Identities=23% Similarity=0.426 Sum_probs=52.0
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..++.++|.++++.+++++++.++++.|.+++...+||+|++++++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 34689999999999999999999999999999999999998899999999999875
No 188
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.45 E-value=0.00025 Score=63.55 Aligned_cols=56 Identities=29% Similarity=0.345 Sum_probs=50.8
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.+.++.++|.+++..+.+++++.++++.|.+++.+.+||+|++ +++|+|+.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 3467899999999999999999999999999999999999976 9999999999864
No 189
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.45 E-value=0.00025 Score=63.60 Aligned_cols=55 Identities=29% Similarity=0.419 Sum_probs=51.0
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+++..|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 3589999999999999999999999999999999999998899999999999864
No 190
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.44 E-value=0.00025 Score=63.43 Aligned_cols=55 Identities=31% Similarity=0.345 Sum_probs=50.6
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.++.++|.+++.++.+++++.++++.|.+++...+||+|+ ++++|+||..|+++
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 34788999999999999999999999999999999999997 89999999999864
No 191
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.44 E-value=0.00031 Score=62.69 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=50.4
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
++.++|.+++.++.+++++.++++.|.+++...+||+|+++++.|+||..|+.+
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 588999899999999999999999999999999999999899999999999864
No 192
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.43 E-value=0.00024 Score=63.58 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=50.5
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..++.++|.+++..+++++++.++++.|.+++...+||+|+ ++++|+||..|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 45788999999999999999999999999999999999985 89999999999875
No 193
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00026 Score=65.18 Aligned_cols=52 Identities=27% Similarity=0.326 Sum_probs=47.8
Q ss_pred hhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 576 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 576 ~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.+.|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||..|+.+
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 3567788999999999999999999999999999998899999999999875
No 194
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.42 E-value=0.00037 Score=51.51 Aligned_cols=47 Identities=36% Similarity=0.441 Sum_probs=42.8
Q ss_pred ceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 004505 583 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 629 (748)
Q Consensus 583 ~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l 629 (748)
+.++.+++++.++.+.|.+++.+.+||+|++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999889999999999998754
No 195
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.42 E-value=0.00024 Score=77.27 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=53.1
Q ss_pred hhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 004505 570 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 628 (748)
Q Consensus 570 L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~ 628 (748)
+.+.+|+++|+++++++.+++++.+|++.|.+++.+.+||+| +++++|+||..|+.+.
T Consensus 266 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 345679999999999999999999999999999999999998 5799999999999875
No 196
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.42 E-value=0.00026 Score=76.89 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=53.3
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 628 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~ 628 (748)
+.+++++|+++++++.+++++.+|++.|.+++.+.+||+|++++++|+||.+|+.++
T Consensus 262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 346889999999999999999999999999999999999988999999999999865
No 197
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.41 E-value=0.00032 Score=61.90 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=49.6
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 626 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~ 626 (748)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 4588999999999999999999999999999999999997 8999999999986
No 198
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00032 Score=62.79 Aligned_cols=56 Identities=29% Similarity=0.390 Sum_probs=51.3
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.++.++|.++++++.+++++.++++.|.+++...+||+|++|++.|++|..|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 35688999999999999999999999999988999999998899999999999864
No 199
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.39 E-value=0.00086 Score=76.76 Aligned_cols=61 Identities=30% Similarity=0.394 Sum_probs=56.1
Q ss_pred hhhhhhhccccC--ceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhc
Q 004505 571 EELKVSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 631 (748)
Q Consensus 571 ~~l~V~diM~~~--~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~ 631 (748)
.+.+|+++|+++ ++++++++++.||++.|.+++.+.+||+|++++++|+||.+|+.+....
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 356799999977 8899999999999999999999999999999999999999999998654
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.38 E-value=0.00053 Score=50.63 Aligned_cols=46 Identities=39% Similarity=0.631 Sum_probs=41.9
Q ss_pred eeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHH
Q 004505 669 LTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 722 (748)
Q Consensus 669 ~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l 722 (748)
.++++++++.++.+.|.+.+.+.+||+++ +++++|+++..|+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 3 VTVSPDTTLEEALELLREHGIRRLPVVDE--------EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred eEecCCCcHHHHHHHHHHhCCCcccEECC--------CCeEEEEEEHHHHHHhh
Confidence 67899999999999999999999999995 68999999999987754
No 201
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.34 E-value=0.00041 Score=62.02 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=47.9
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
..+.++| +++.++.+++++.++++.|.+++.+.+||+|++++++|++|.+|+.+
T Consensus 57 ~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3466666 46889999999999999999999999999999899999999999863
No 202
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.33 E-value=0.00042 Score=62.89 Aligned_cols=57 Identities=33% Similarity=0.439 Sum_probs=52.1
Q ss_pred hhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 570 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 570 L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
....++.++|.++++++.+++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 4456799999999999999999999999999999999999987 89999999999875
No 203
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.32 E-value=0.00048 Score=62.05 Aligned_cols=52 Identities=35% Similarity=0.440 Sum_probs=49.3
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHc-CCCCEEEEEeCCC-cEEEEEeHHHH
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKD-GQQNCVLVVNGED-FLEGILTYGDI 625 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~-~~~~~lpVVd~~g-~lvGiVt~~DL 625 (748)
++.++|.++++++.++.++.++.+.|.+ ++.+.+||+|+++ +++|++|..|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 6899999999999999999999999999 7999999999986 99999999987
No 204
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.31 E-value=0.00048 Score=61.11 Aligned_cols=53 Identities=28% Similarity=0.319 Sum_probs=48.7
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
++.++|.++..++++++++.++++.|.+++...+||+| +++++|++|.+|+.+
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 47788988999999999999999999999999999998 589999999999864
No 205
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00053 Score=63.20 Aligned_cols=58 Identities=28% Similarity=0.440 Sum_probs=51.2
Q ss_pred hhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEe--CCCcEEEEEeHHHHHH
Q 004505 570 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVN--GEDFLEGILTYGDIKR 627 (748)
Q Consensus 570 L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd--~~g~lvGiVt~~DL~~ 627 (748)
..+.++.++|.++++++++++++.++++.|.+++...+||++ ++++++|+||.+|+.+
T Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 344678999999999999999999999999999889999985 4689999999999874
No 206
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.23 E-value=0.00072 Score=61.24 Aligned_cols=57 Identities=25% Similarity=0.193 Sum_probs=49.8
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCC---EEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQN---CVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~---~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.+.++.++|.+++..+.+++++.++++.|.+++.. ..+|+|++++++|+||..|+.+
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 45679999999999999999999999999988753 4578888899999999999864
No 207
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.23 E-value=0.00068 Score=71.35 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=60.1
Q ss_pred HhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcc
Q 004505 567 EMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 632 (748)
Q Consensus 567 ~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~ 632 (748)
....++.++..+|++++.++.+.+|++.+.+.|.=.+++-+||+|++.+++|+||+.|+++.++..
T Consensus 243 ~~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 243 LDKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred hcCCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 344567889999999999999999999999999999999999999999999999999999987653
No 208
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.17 E-value=0.0011 Score=62.17 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=44.8
Q ss_pred ceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 668 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 668 ~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
+.++.+++++.+|++.|.+++...+||+|+ +++++|+||.+|+++.+..
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~--------~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDS--------DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECC--------CCeEEEEEEHHHHHHHHhh
Confidence 378999999999999999999999999996 7899999999999987754
No 209
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.15 E-value=0.0011 Score=75.80 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=54.5
Q ss_pred hhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 004505 572 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 629 (748)
Q Consensus 572 ~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l 629 (748)
+.+++++|++ +++++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 4679999998 899999999999999999999999999999999999999999999874
No 210
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.15 E-value=0.00097 Score=58.49 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=42.1
Q ss_pred CceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 667 GLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 667 ~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
++.++++++++.++.+.|.++++..+||+|+ +++++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--------~~~~~Giv~~~dl~~ 47 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD--------DGKLSGIITERDLIA 47 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC--------CCCEEEEEEHHHHhc
Confidence 3478999999999999999999999999996 789999999999876
No 211
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.12 E-value=0.00067 Score=76.00 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=54.6
Q ss_pred ccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 646 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 646 ~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
..+.+|+|+|++.. ++.+++.+++++++.+.|.++++.++||.++ +.++++|+|+.+|++..+.
T Consensus 188 l~~~~v~diMtpr~-------~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~-------~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 188 FGNTDTKQVMRPRL-------DIFALDIETSFSEIIPKIIENGYSRIPVYKE-------TIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred cCCCEeeeeCCchH-------hEEEEECCCCHHHHHHHHHhCCCCEEEEEcC-------CCCceEEEEEHHHHHhHhc
Confidence 34678999999743 4589999999999999999999999999985 2468999999999987544
No 212
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.10 E-value=0.00083 Score=59.96 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=45.8
Q ss_pred ccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 578 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 578 iM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 8888999999999999999999999999999995 789999999999875
No 213
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.10 E-value=0.0014 Score=60.46 Aligned_cols=51 Identities=25% Similarity=0.468 Sum_probs=45.4
Q ss_pred CceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHH
Q 004505 667 GLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 725 (748)
Q Consensus 667 ~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~ 725 (748)
++.++++++++.++.+.|.+++...+||+|+ +++++|+++.+|+++.+.++
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~--------~~~~~Gii~~~dl~~~~~~~ 53 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE--------SGKILGMVTLGNLLSSLSSG 53 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCCEEEEEEHHHHHHHHHHh
Confidence 3488999999999999999999999999996 78999999999999866543
No 214
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.06 E-value=0.0016 Score=72.06 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=77.9
Q ss_pred hhhhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccc
Q 004505 569 LLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNT 648 (748)
Q Consensus 569 ~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~ 648 (748)
..+-++++++|.+.......+- . .+++. ++.+.+.|+|+ |+++..+......... .
T Consensus 270 ~~~~l~a~~~m~~~~~~~~~~~-~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------------~ 325 (382)
T TIGR03415 270 PLNVLTARSLMRPLTDLEHVDG-G-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA--------------E 325 (382)
T ss_pred cccceeHHHHhcccccccccCc-c-hhhhh---cccceeEeecc-----ceecccchHhHhhccc--------------c
Confidence 3556789999954333333332 2 44433 77888999985 8898887665432111 1
Q ss_pred hhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 649 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 649 ~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
..+.+ +..+. .++++|+++.+++..+.+.+. .++|+| +|+++|+|++.++++.+.
T Consensus 326 ~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~v~~---------~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 326 QEVES-LEAAP---------TVINPDTLMRDVLAARHRTGG-AILLVE---------NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cchhh-hcccC---------cccCCCCcHHHHHHHHhcCCC-CeEEee---------CCeEEEEEeHHHHHHHHh
Confidence 12444 33333 789999999999999988776 588998 599999999999998875
No 215
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.03 E-value=0.001 Score=59.13 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=46.8
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++++++++.++.+.|.+ .. ..||+|++++++|+||.+|+.+
T Consensus 57 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 57 LPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred cCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 56889999999999999999999999988 33 4789998899999999999875
No 216
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00089 Score=74.95 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=58.3
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhccc
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 633 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~ 633 (748)
.+.+++++|.++++++.++++.+|+.+.+++++.-.+||||++++++|+||..|+...+++..
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999999999999999999999999876543
No 217
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.00 E-value=0.0021 Score=60.83 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=51.3
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
...++.++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+++.+|+++
T Consensus 87 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 456788999999999999999999999999999999999997 89999999999864
No 218
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.00 E-value=0.0015 Score=57.59 Aligned_cols=53 Identities=38% Similarity=0.446 Sum_probs=49.4
Q ss_pred hhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 575 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 575 V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
+.++|.+++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 66789899999999999999999999999999999999999999999999864
No 219
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.96 E-value=0.0012 Score=73.79 Aligned_cols=61 Identities=30% Similarity=0.252 Sum_probs=56.5
Q ss_pred hhhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcc
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 632 (748)
Q Consensus 571 ~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~ 632 (748)
...+|+++|+.++++++.++.+-||.-.|.+++++++||++ +|+++|+||..||++.+.++
T Consensus 212 ~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 212 KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQN 272 (610)
T ss_pred cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCCC
Confidence 45789999999999999999999999999999999999997 78999999999999987654
No 220
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.96 E-value=0.0029 Score=67.65 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=52.6
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcc
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 632 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~ 632 (748)
.++.++|.+. .++++++++.++++.|++++.+.+||+|+.|.++|+||..|+++.+...
T Consensus 133 ~~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 133 FSMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred CCHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 3478889764 5899999999999999999999999999989999999999999987643
No 221
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.92 E-value=0.0021 Score=56.95 Aligned_cols=54 Identities=31% Similarity=0.324 Sum_probs=48.6
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 627 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~ 627 (748)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ ++++|++|..|+.+
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 3577889889999999999999999999999999999995 79999999999864
No 222
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.90 E-value=0.0032 Score=71.47 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=54.8
Q ss_pred hhhhhhccc-cCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHh
Q 004505 572 ELKVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 630 (748)
Q Consensus 572 ~l~V~diM~-~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~ 630 (748)
+.+++++|+ ++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+.
T Consensus 142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 467999999 49999999999999999999999999999999999999999999998753
No 223
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0014 Score=68.66 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=87.3
Q ss_pred hhhhhhhhhhcccc--CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCcccc
Q 004505 568 MLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 645 (748)
Q Consensus 568 ~~L~~l~V~diM~~--~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 645 (748)
...+-++++++|.+ ....-.+...-..+++.+.+.....+.+++.+++.+|+|+..+....
T Consensus 269 ~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----------------- 331 (386)
T COG4175 269 DRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA----------------- 331 (386)
T ss_pred ChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-----------------
Confidence 34556789999985 22222233444678888988888888888888889999999887643
Q ss_pred ccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 646 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 646 ~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
.+...+ .++.+|+++.+.+..+.+... .++|+|+ +++++|+|++.++++++..
T Consensus 332 --------~~~~~~---------~~v~~d~~~~~~~~~~~~~~~-p~aVvde--------~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 --------ALIDDV---------LTVDADTPLSEILARIRQAPC-PVAVVDE--------DGRYVGIISRGELLEALAR 384 (386)
T ss_pred --------cccccc---------cccCccchHHHHHHHHhcCCC-ceeEEcC--------CCcEEEEecHHHHHHHHhc
Confidence 122222 688899999999999888777 7899997 8999999999999988753
No 224
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.79 E-value=0.0024 Score=72.77 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=54.7
Q ss_pred ccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 646 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 646 ~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
....+++++|.+++ .++.+++++.++++.|.+++...+||+|+ +++++|+||.+|+.+.+.+
T Consensus 332 l~~~~v~~im~~~~---------~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~--------~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 332 LKNATVKDLHLPAP---------VTVHPTETVGDAIEILREYGFDQLPVVTE--------AGKVLGSVTLRELLSALFA 393 (454)
T ss_pred hccCCHHHhCcCCC---------eEECCCCcHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHHHHhc
Confidence 34577999998877 89999999999999999999999999995 7899999999999886653
No 225
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.78 E-value=0.0023 Score=67.42 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=51.9
Q ss_pred hhhhhhhhcC-ccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHH
Q 004505 649 CLVSSICTRG-ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 723 (748)
Q Consensus 649 ~~V~dim~~~-~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~ 723 (748)
.+|+++|+++ . .++.+++++.++++.|.+.+.+.+||+|+ +|+++|+|+.+|+.+.+.
T Consensus 155 ~~v~~im~~~~~---------~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~--------~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 155 VKVKDLMQTTDL---------PLIAPTTSFKDALLEMSEKRLGSAIVCDE--------NNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhHHHHhCCCCC---------CcCCCCCcHHHHHHHHhhcCCcEEEEEeC--------CCCEEEEEEcHHHHHHHh
Confidence 5788999876 5 88999999999999999999999999996 789999999999987643
No 226
>PRK11573 hypothetical protein; Provisional
Probab=96.42 E-value=0.0053 Score=68.86 Aligned_cols=63 Identities=6% Similarity=0.087 Sum_probs=54.9
Q ss_pred ccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHH
Q 004505 646 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 722 (748)
Q Consensus 646 ~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l 722 (748)
..+.+++|+|++.. ++..++.+++++++.+.+.++++.++||.++ +.++++|+|+.+|++...
T Consensus 184 l~~~~v~eiMtPr~-------~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-------~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 184 LEKVTVDDIMVPRN-------EIVGIDINDDWKSILRQLTHSPHGRIVLYRD-------SLDDAISMLRVREAYRLM 246 (413)
T ss_pred cCCCChhhcCCccc-------eEEEEECCCCHHHHHHHHHhCCCceEEEEcC-------CCCceEEEEEHHHHHHHh
Confidence 35678999999765 6789999999999999999999999999975 247899999999998754
No 227
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.30 E-value=0.008 Score=66.21 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=52.4
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhc
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 631 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~ 631 (748)
.+.+.|.++..++++++++.+++..|.++++. +||+|++|+++|+||..++++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 47788888899999999999999999999988 9999999999999999999998654
No 228
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.028 Score=62.70 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=52.1
Q ss_pred hhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcc
Q 004505 573 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 632 (748)
Q Consensus 573 l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~ 632 (748)
-.+.+.+.++..++.+++++.+++..+.++... +||||++|+++|+|+..++++.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 337 QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 357777888889999999999999999987766 99999999999999999999987654
No 229
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=95.42 E-value=0.025 Score=63.93 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=57.7
Q ss_pred ccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHHH
Q 004505 646 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 725 (748)
Q Consensus 646 ~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~~ 725 (748)
..+.+++++|++.. ++..++.+++++++.+.+.++++.++||.++ +.+.++|+++.+|++....+.
T Consensus 203 l~~~~v~eiMtPR~-------~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-------~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 203 LDDRTVREIMTPRT-------DIVALDLTDTVEELIELILESGHSRIPVYDG-------DLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cCCcEeeeEeeecc-------cEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-------CCCcEEEEEEHHHHHHHHhcC
Confidence 45778999999755 6689999999999999999999999999994 268899999999999887655
No 230
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.85 E-value=0.007 Score=60.58 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCCccccccchhhhhhhhcCccccCCCCCce
Q 004505 590 VTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLL 669 (748)
Q Consensus 590 ~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~~~ 669 (748)
.+-.|.+.++++..++.+.=-|.-..+.|++.. .+..|+|+|.+.. ++.
T Consensus 32 knr~eLl~liRdse~n~LiD~dt~~mlEGvm~i------------------------adl~vrDiMIPRS-------QM~ 80 (293)
T COG4535 32 KNREELLELIRDSEQNELIDADTLDMLEGVMDI------------------------ADLRVRDIMIPRS-------QMI 80 (293)
T ss_pred cCHHHHHHHHHHhhhccccChhHHHHHHHHHHH------------------------HHhhHhhhcccHH-------Hhe
Confidence 356888888888766543211111122222222 3456899998755 668
Q ss_pred eeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHHHHH
Q 004505 670 TCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 670 ~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~l~~ 724 (748)
++..+.++.+.+..+.+....+.||+.+ +++.+.||+..+|+++.++.
T Consensus 81 ~l~~~~~l~~~l~~iiesaHSRfPVi~e-------dkD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 81 TLKRNQTLDECLDVIIESAHSRFPVISE-------DKDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred eccccCCHHHHHHHHHHhccccCCcccC-------CchhhhhhhhHHHHHHHhcC
Confidence 9999999999999999999999999986 36789999999999998765
No 231
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.71 E-value=0.031 Score=60.24 Aligned_cols=57 Identities=33% Similarity=0.328 Sum_probs=53.4
Q ss_pred hhhhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 004505 572 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 628 (748)
Q Consensus 572 ~l~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~ 628 (748)
...++|+|+++.++.+.+.+++++-+++++++...+||||++|+++-++++.||.+.
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 456889999999999999999999999999999999999999999999999999876
No 232
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=94.23 E-value=0.089 Score=60.21 Aligned_cols=135 Identities=15% Similarity=0.078 Sum_probs=93.3
Q ss_pred HHHhhhhhhhhhhcccc--CceEecCCCCHH-HHHHHHHcCCCCEEEEEeCCC-cEEEEEeHHHHHHHHhcccCCCCCCC
Q 004505 565 AEEMLLEELKVSRAMSK--DFVKVALTVTLK-EAIESMKDGQQNCVLVVNGED-FLEGILTYGDIKRCLSKLSSDNSKGD 640 (748)
Q Consensus 565 ~~~~~L~~l~V~diM~~--~~~~v~~~~tv~-eal~~m~~~~~~~lpVVd~~g-~lvGiVt~~DL~~~l~~~~~~~~~~~ 640 (748)
.....+....++|+|++ ++..++.+..+. +......+.+++++||.+.+. ..+|.+-...+.+.......
T Consensus 196 ~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~------ 269 (498)
T KOG2118|consen 196 TGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVP------ 269 (498)
T ss_pred hhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccc------
Confidence 34556888999999998 677777777776 566667789999999998653 23333222333333221111
Q ss_pred CccccccchhhhhhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHH
Q 004505 641 SIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 720 (748)
Q Consensus 641 ~~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~ 720 (748)
....++.+.+.... ..+++++++.+..+.|++.+.+.+.|.+ ...-+++++..|+ +
T Consensus 270 -----~~~~~v~~~~~~~l---------~~vp~~~~~~~~l~~~~~~~~H~~~v~~---------~~~~~~~~~l~~~-~ 325 (498)
T KOG2118|consen 270 -----LEPLPVSESALLRL---------PLVPENMPLLDLLNEFQKGKSHMAVVRN---------GHVDIFVLTLEDL-E 325 (498)
T ss_pred -----cccccchhhhcccc---------ccCCCcccHHHHHHHHhhhhceeEEEec---------CCcceeeEeccch-h
Confidence 23456777776655 7889999999999999988886666655 4567999999998 6
Q ss_pred HHHHHHHhh
Q 004505 721 CLREEVNHR 729 (748)
Q Consensus 721 ~l~~~~~~~ 729 (748)
...++++.+
T Consensus 326 ~~~~ev~de 334 (498)
T KOG2118|consen 326 EVVKEVEDE 334 (498)
T ss_pred hhcceeccc
Confidence 555555443
No 233
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.40 E-value=0.65 Score=47.89 Aligned_cols=121 Identities=16% Similarity=0.086 Sum_probs=73.7
Q ss_pred ccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCC--CCCCCCccccccchhhhhhhhc
Q 004505 580 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSD--NSKGDSIASDVNTCLVSSICTR 657 (748)
Q Consensus 580 ~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~--~~~~~~~~~~~~~~~V~dim~~ 657 (748)
.+.++.|. ..+.||+++- +.+.|.| +|+++=+=+..++++.....--. ....+.........++.+.|..
T Consensus 186 ~kTivfVT--HDidEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~ 257 (309)
T COG1125 186 GKTIVFVT--HDIDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRR 257 (309)
T ss_pred CCEEEEEe--cCHHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcc
Confidence 34444444 4578998873 3567777 78999999988887652221000 0000011111234456666654
Q ss_pred CccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 658 GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 658 ~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
.....+ -.........+++..+...+...+||+|+ +|+++|.||++|+++.
T Consensus 258 ~~~~~~-----~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~--------~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 258 GEPADG-----EPLLEGFVDRDALSDFLARGRSVLPVVDE--------DGRPLGTVTRADLLDE 308 (309)
T ss_pred cccccC-----CccccchhhHHHHHHHHhcCCceeEEECC--------CCcEeeEEEHHHHhhh
Confidence 331111 12234445556888888899999999997 8999999999999864
No 234
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=90.96 E-value=1.1 Score=48.40 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=45.3
Q ss_pred CceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhc
Q 004505 582 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 631 (748)
Q Consensus 582 ~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~ 631 (748)
++..+++.+++.+-+..|++++-+--.|||+-|.+.|+||.+|++.-+..
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence 57789999999999999999998889999999999999999999987543
No 235
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.80 E-value=0.62 Score=51.73 Aligned_cols=54 Identities=11% Similarity=0.219 Sum_probs=45.8
Q ss_pred hhhhccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHh
Q 004505 574 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 630 (748)
Q Consensus 574 ~V~diM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~ 630 (748)
++.+ +.++..++++++++.|++..+.++++. ++|+|+ |+++|+|+..+++..+.
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 4555 666788999999999999998887754 788885 99999999999998764
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.25 E-value=2.2 Score=45.48 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=45.5
Q ss_pred ccccCceEecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhc
Q 004505 578 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 631 (748)
Q Consensus 578 iM~~~~~~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~ 631 (748)
.+.+++.++..++++.+.+..+.+.+ ..++|+|++++++|++++.+++.++..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 56667889999999999999888765 468999999999999999999988643
No 237
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=82.89 E-value=29 Score=41.40 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=25.8
Q ss_pred HhhhHhhhhhhcccchh-hHH-HHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhh
Q 004505 236 AAGAASGIASGFNAAVA-GCF-FAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL 292 (748)
Q Consensus 236 ~~g~aag~aa~f~aPl~-g~l-f~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 292 (748)
..|.+|.+++.++ ++ +++ |++..-.+ + ....++++.++..++..+
T Consensus 526 ~~~~~a~i~g~~g--ITEpaIPfgv~~p~~--------~--i~~~~iG~avgG~i~~~~ 572 (631)
T PRK09765 526 ETGKSTWLLGLAG--ITEGAIPMAIEDPLR--------V--IGSFVLGSMVTGAIVGAM 572 (631)
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHhccch--------H--HHHHHHHHHHHHHHHHHh
Confidence 4577788888776 44 666 77764211 1 113456666666665543
No 238
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=81.02 E-value=2.7 Score=43.51 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=45.3
Q ss_pred hhhhhhhhhhccccCce----EecCCCCHHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 004505 568 MLLEELKVSRAMSKDFV----KVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 628 (748)
Q Consensus 568 ~~L~~l~V~diM~~~~~----~v~~~~tv~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~ 628 (748)
..+...++.+.|.+... .+.....-.+++..+...+...+||+|++|+++|.||..++...
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 244 RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 34566777777766332 23344555667777777888999999999999999999998753
No 239
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=58.75 E-value=2.4e+02 Score=31.08 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHH
Q 004505 143 ILLIPVTGGVIVGMM 157 (748)
Q Consensus 143 ~~l~p~~ggl~vg~~ 157 (748)
+++.|+++-++++++
T Consensus 135 iliiP~l~~li~g~l 149 (359)
T PRK10478 135 IFIIPIVGTLITAGI 149 (359)
T ss_pred eeeeHHHHHHHHHHH
Confidence 356677777777665
No 240
>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Probab=45.45 E-value=5.2e+02 Score=29.58 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhhcccchh-hHHHHHH
Q 004505 211 DIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVA-GCFFAIE 259 (748)
Q Consensus 211 ~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~f~aPl~-g~lf~~E 259 (748)
+.|++++..+. +.+++.| ..+.+|.+++.++ ++ .++|.+-
T Consensus 351 ~~GaalA~~l~---~K~k~~k----~~a~sa~i~~~~G--ITEPaiygv~ 391 (461)
T TIGR01996 351 QGGAALAVFFK---TKDKKLK----GLAIPSGLSALLG--ITEPAIFGVN 391 (461)
T ss_pred HHHHHHHHHHH---hCCHHHH----HHHHHHHHHHHhC--CcccHHHHhh
Confidence 44555554332 2244443 4566777777775 33 4456653
No 241
>PRK12438 hypothetical protein; Provisional
Probab=44.75 E-value=7.4e+02 Score=31.18 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhccCCcc
Q 004505 106 AFFNKGVHIIHEWAWAGTPNE 126 (748)
Q Consensus 106 ~~f~~~i~~~~~~~~~~~~~~ 126 (748)
.++..+.++..+|+|....+.
T Consensus 31 ~~~~~~~~~~td~lWf~~lgy 51 (991)
T PRK12438 31 LFGPRLVDIYTDWLWFGEVGF 51 (991)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 344556788899999765443
No 242
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=42.01 E-value=5.8e+02 Score=29.19 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhhcccchh-hHHHHHH
Q 004505 211 DIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVA-GCFFAIE 259 (748)
Q Consensus 211 ~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~f~aPl~-g~lf~~E 259 (748)
|.|++++.++- ..|++.| ..+.+|++++.|+ ++ .++|.+=
T Consensus 352 q~ga~lav~lk---~k~~~~k----~~a~sa~is~~~G--ITEPaiyGv~ 392 (462)
T TIGR01992 352 QGSAALGIIFM---SRNEKEK----GLSLTSAISAYLG--VTEPAMFGVN 392 (462)
T ss_pred HHHHHHHHHHH---HCCHHHH----HHHHHHHHHHHhc--cchHhHHHhc
Confidence 55555555441 1234433 4578888888886 33 4556664
No 243
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=40.83 E-value=5.3e+02 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.421 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhcCCcceeecccC------C--CCccchHHHHHHHHHHHHHHHHHHH
Q 004505 279 ILASVISSTVSTVLLGTQSAFTVPSY------D--LKSAAELPLYLILGMLCGVVSVVFT 330 (748)
Q Consensus 279 ~~a~~~a~~v~~~~~g~~~~~~~~~~------~--~~~~~~l~~~i~lGi~~Gl~g~~f~ 330 (748)
.+..+..+...|..+|.+. |.+.-. . ...+..+..|...|++|++.|..+.
T Consensus 251 vl~~~~~fvt~rT~fGR~V-yAiGGN~eAA~LSGInv~r~t~~vF~~mGvl~AiAgli~t 309 (394)
T COG4214 251 VLLIVFTFVTTRTVFGRRV-YAIGGNPEAARLSGINVERVTLLVFVIMGVLAAIAGLILT 309 (394)
T ss_pred HHHHHHHHHhhhceeeeEE-EEecCCHHHHHhcCCceeehhHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777654 332210 0 1234566778889999888887654
No 244
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=40.67 E-value=7.7e+02 Score=30.23 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCc
Q 004505 103 LCVAFFNKGVHIIHEWAWAGTPN 125 (748)
Q Consensus 103 l~~~~f~~~i~~~~~~~~~~~~~ 125 (748)
++.+++..+.++..+|+|....+
T Consensus 15 ~l~~~~~~~~~~~td~lWF~~lg 37 (774)
T PF03699_consen 15 LLILLGFILVGFYTDWLWFSSLG 37 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444446788889999875443
No 245
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=40.49 E-value=6.3e+02 Score=29.14 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=22.9
Q ss_pred HhhhHhhhhhhcccchh-hHH-HHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhh
Q 004505 236 AAGAASGIASGFNAAVA-GCF-FAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL 292 (748)
Q Consensus 236 ~~g~aag~aa~f~aPl~-g~l-f~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 292 (748)
..+.+|.+++.++ ++ +++ |++..-. ++.. .+++++.++..++-++
T Consensus 373 ~~~~sa~i~gl~G--ITEpAIPfgv~~p~---------~~i~-a~~iG~avgGa~~~~~ 419 (482)
T PRK11404 373 EAASSAIVVGATV--ATEPAIPYALAAPL---------PMIT-ANTLAGGITGVLVIAF 419 (482)
T ss_pred HHHHHHHHHHHHh--cCcchhHHHHcCch---------HHHH-HHHHHHHHHHHHHHHh
Confidence 3466677777665 33 555 6654211 2211 1256666666665543
No 246
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=39.18 E-value=2e+02 Score=35.09 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=49.2
Q ss_pred hcccchhhHHHHHHHhhcccccccCCchhHHHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHHHHHHHHH
Q 004505 246 GFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVV 325 (748)
Q Consensus 246 ~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl~ 325 (748)
.|..+.-.++|-+-++.-.... -.++.+++|+++.+++++||-. |.|++.-++......+..+++.|++.|-+
T Consensus 419 ~~~~~ni~mvFllgVlv~av~~------g~~pa~~aailsvl~fNyFF~e-PryTf~v~d~~y~vTf~vml~vai~t~~L 491 (890)
T COG2205 419 FFDLANIVMLFLLGVLVVAVLT------GRWPAVLAALLSVLVFNYFFTE-PRYTFAVSDPQYLVTFAVMLAVALLTGNL 491 (890)
T ss_pred hccchhHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHHHhheecC-CceEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 5777777888888776533211 1356889999999999887653 44554434433344555666677776655
Q ss_pred HHHHHH
Q 004505 326 SVVFTR 331 (748)
Q Consensus 326 g~~f~~ 331 (748)
..-..+
T Consensus 492 t~~vr~ 497 (890)
T COG2205 492 TARVRE 497 (890)
T ss_pred HHHHHH
Confidence 544433
No 247
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=37.00 E-value=8.8e+02 Score=29.79 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004505 310 AELPLYLILGMLCGVVSVVFTRLVAWFTK 338 (748)
Q Consensus 310 ~~l~~~i~lGi~~Gl~g~~f~~~~~~~~~ 338 (748)
-++...++=+++++.+..+|.+.+..+..
T Consensus 113 y~~~~~~~e~~l~~~l~~if~~~~~~~~~ 141 (764)
T TIGR02865 113 LDFILSIVEASLSFVLYYIFNYSIPCLKN 141 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566777788999999999988876643
No 248
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.32 E-value=48 Score=30.54 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004505 313 PLYLILGMLCGVVSVVF 329 (748)
Q Consensus 313 ~~~i~lGi~~Gl~g~~f 329 (748)
...|++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 35689999999988765
No 249
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=36.25 E-value=7.8e+02 Score=29.00 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=14.9
Q ss_pred CHHHHHHHHHhhhHhhhhhhcccchhhHH-HHHH
Q 004505 227 NRERKIALVAAGAASGIASGFNAAVAGCF-FAIE 259 (748)
Q Consensus 227 ~~~~~~~l~~~g~aag~aa~f~aPl~g~l-f~~E 259 (748)
++++| ..+.++.+.+.++--= +++ |++.
T Consensus 456 ~k~er----~~~~sa~i~gl~GITE-pAIPf~~~ 484 (563)
T PRK10712 456 DKAQQ----EGGKAALVLGLCFISE-GAIPFAAR 484 (563)
T ss_pred CHHHH----HHHHHHHHHHHHhcCc-chhHHHHh
Confidence 55544 3466667776665222 333 6654
No 250
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=35.08 E-value=7.5e+02 Score=28.44 Aligned_cols=31 Identities=3% Similarity=0.017 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhhcc
Q 004505 211 DIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFN 248 (748)
Q Consensus 211 ~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~f~ 248 (748)
|.|+++|.++-. .+++.| ..+.+|++++.|+
T Consensus 352 q~ga~lav~lkt---K~~~~k----~~a~sa~isa~~G 382 (473)
T PRK11007 352 QASAVVGIIIIS---RKHNER----EISVPAAISAYLG 382 (473)
T ss_pred HHHHHHHHHHHH---cCHHHH----HHHHHHHHHHHhc
Confidence 555555554411 233333 4567778888775
No 251
>PRK10490 sensor protein KdpD; Provisional
Probab=34.54 E-value=2.6e+02 Score=34.96 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCcceeecccCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 004505 276 AMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTR 331 (748)
Q Consensus 276 ~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl~g~~f~~ 331 (748)
++.++++++|.+++++||- .|.|++.-.+...+..+.+++++|+++|.+..-..+
T Consensus 446 ~pai~aavls~l~~nfFF~-~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l~~r~r~ 500 (895)
T PRK10490 446 WPSVVATVINVASFDLFFV-APRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRY 500 (895)
T ss_pred HHHHHHHHHHHHHHHheeC-CCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887664 355555444444556677777888888766554443
No 252
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=33.92 E-value=52 Score=39.34 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=65.6
Q ss_pred hhhccccCceEecCCCC-HHHHHHHHHcCCCCEEEEEeCCCcEEEEEeHHHHHHHHhcccCCCCCCCC-ccccccchhhh
Q 004505 575 VSRAMSKDFVKVALTVT-LKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDS-IASDVNTCLVS 652 (748)
Q Consensus 575 V~diM~~~~~~v~~~~t-v~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~DL~~~l~~~~~~~~~~~~-~~~~~~~~~V~ 652 (748)
..+.+.++-..+....+ +.+..+.+...+ ..++++|++|.++.+....++.+........ .+.. ......+.-+.
T Consensus 43 ~~~~~~~~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~--~G~~w~E~~~GTnaig 119 (638)
T PRK11388 43 FASIYRRKKALLTLGQAALEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFN--DGTYCAEGIIGTNALS 119 (638)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCc--cCCccchhccCcCHHH
Confidence 34444444333444444 445555666555 7899999999999999999888765432110 0000 00000111122
Q ss_pred hhhhcCccccCCCCCceeeCCCCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEE
Q 004505 653 SICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILH 714 (748)
Q Consensus 653 dim~~~~~~~~~~~~~~~v~~d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt 714 (748)
-.+. ++.++.|....-..+. +....+...||.|. +|+++|+|+
T Consensus 120 ~al~--------~~~pv~v~g~EH~~~~---~~~~~c~aaPI~d~--------~G~liGvl~ 162 (638)
T PRK11388 120 LAAI--------SGQPVKTMGDQHFKQA---LHNWAFCATPVFDS--------KGRLTGTIA 162 (638)
T ss_pred HHHh--------cCCceEEecHHHHHHh---ccCceEEeeEEEcC--------CCCEEEEEE
Confidence 2221 1233556655544443 33456778999996 799999996
No 253
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=28.22 E-value=97 Score=35.51 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHcCCCeeeEeeccchhhccCCCeEEEEEEHhHHHHH
Q 004505 674 DTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 721 (748)
Q Consensus 674 d~sl~ea~~~m~~~~~~~lpVVd~~~~~~~~~~g~lvGIIt~~Dll~~ 721 (748)
...++.+.+...+.+-..++|++ ++++.|+|..+|+++-
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~---------~~~~~GVI~LkDivK~ 450 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE---------NGRILGVIYLKDIVKP 450 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE---------CCEEEEEEEehhhcch
Confidence 34688899999999999999998 7999999999999873
No 254
>COG3329 Predicted permease [General function prediction only]
Probab=27.81 E-value=7.9e+02 Score=26.47 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchHHHHHHHHHHhc-CchhHHHHHH--
Q 004505 422 YAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR-DYRILLPLMG-- 498 (748)
Q Consensus 422 f~P~l~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~~~~~a~~GaaA~la~~~~aPlt~~vl~~Eltg-~~~~llP~~~-- 498 (748)
+.|+. .|..+|.++.-+..++... +|. ...+-.+..|+.++++.-.++++++=.+|-.| .|+...|.|.
T Consensus 71 v~~~~-~~~aL~~li~~ia~f~l~k-l~~------vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lal 142 (372)
T COG3329 71 VLPVA-LGVALGFLIVFIAYFLLRK-LPK------VDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLAL 142 (372)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH-ccc------cchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 45655 5666666665554444332 343 23455566777888888889999998888776 4544444333
Q ss_pred ----HHHHHHHHHH
Q 004505 499 ----AVGLAIWVPS 508 (748)
Q Consensus 499 ----a~~~a~~v~~ 508 (748)
++++|..+..
T Consensus 143 MeiPallval~l~~ 156 (372)
T COG3329 143 MEIPALLVALVLAN 156 (372)
T ss_pred hhchHHHHHHHHHH
Confidence 4556666655
No 255
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.05 E-value=3.4e+02 Score=26.68 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=10.7
Q ss_pred chhHHHhhhHHHHHHHHh
Q 004505 350 PPVVCPALGGLGAGIIAL 367 (748)
Q Consensus 350 ~~~~~~~l~gl~~g~~~~ 367 (748)
+..+...+++++.++++.
T Consensus 151 ~~~~~~~~aa~~~~~~a~ 168 (193)
T PF06738_consen 151 NSFIQEFIAAFLASLLAA 168 (193)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344556667766666554
No 256
>PF13303 PTS_EIIC_2: Phosphotransferase system, EIIC
Probab=27.01 E-value=8.5e+02 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=18.4
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHhhh
Q 004505 486 LTRDYRILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 486 ltg~~~~llP~~~a~~~a~~v~~~~~ 511 (748)
+..+...++|.++++.++=.++..++
T Consensus 236 i~knP~i~iP~~i~aaI~G~ia~~~~ 261 (327)
T PF13303_consen 236 IIKNPIIWIPPIIAAAILGPIATLFN 261 (327)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHhh
Confidence 34466688888888777777777663
No 257
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=26.61 E-value=1.4e+02 Score=26.60 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=45.2
Q ss_pred HhhhhhhhhhhccccCceEecCCCCHHHHHHHHH---cCCCCEEEEEeC-CCc----EEEEEeHHHHHHHHhc
Q 004505 567 EMLLEELKVSRAMSKDFVKVALTVTLKEAIESMK---DGQQNCVLVVNG-EDF----LEGILTYGDIKRCLSK 631 (748)
Q Consensus 567 ~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~---~~~~~~lpVVd~-~g~----lvGiVt~~DL~~~l~~ 631 (748)
+..+.+-.|.+.+.++++.+..+.+=.|..+... ..+...+.++|. +|+ +.|.++.++++..+.+
T Consensus 37 ~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 37 RDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred HHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 4457777888999888888776665344444444 455667778887 664 4589999998877543
No 258
>PRK11677 hypothetical protein; Provisional
Probab=26.40 E-value=69 Score=30.03 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004505 88 WALLLIGCLLGLASGLCVAFF 108 (748)
Q Consensus 88 ~~l~l~~iliG~~~Gl~~~~f 108 (748)
|..+++++++|+++|+++.-+
T Consensus 3 W~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888899999999999888776
No 259
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=24.87 E-value=1.1e+03 Score=27.24 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhhc
Q 004505 212 IGKSCANGFSLMMENNRERKIALVAAGAASGIASGF 247 (748)
Q Consensus 212 iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~f 247 (748)
+.+..|..++-+++..+++|+..-+...+|++++.+
T Consensus 281 ~fg~~gaalA~~~~ak~~~kk~v~~l~~sa~lta~l 316 (502)
T TIGR02002 281 MFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFL 316 (502)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666665344445555555554
No 260
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=24.59 E-value=3.4e+02 Score=32.49 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004505 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQ 166 (748)
Q Consensus 88 ~~l~l~~iliG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~~g~~~~~~~ 166 (748)
+.+++-+++++++.|+++.++-.++.++...+.... ....+|+. +++.+..++++|++.|+-.....
T Consensus 570 ~qFL~Es~~l~~~GGiiGi~lg~~~~~~~~~~~~~~-----------~~~~~~~~-~~~a~~~s~~vGl~~GlyPA~rA 636 (648)
T PRK10535 570 QQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGW-----------EIGFSPLA-LLSAFLCSTVTGILFGWLPARNA 636 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------eEEeCHHH-HHHHHHHHHHHHHHHhHHHHHHH
Confidence 357788888888888888888776655443321111 11224442 34444456777777665444433
No 261
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38 E-value=62 Score=28.97 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=14.5
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 004505 308 SAAELPLYLILGMLCGVVSV 327 (748)
Q Consensus 308 ~~~~l~~~i~lGi~~Gl~g~ 327 (748)
++|-++.+++||+++|++-+
T Consensus 73 sPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 73 SPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45777778888888876654
No 262
>smart00594 UAS UAS domain.
Probab=23.86 E-value=1e+02 Score=27.97 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHhhhhhhhhhhccccCceEecCCCCHHHHHHHHHcC---CCCEEEEEeCCC---------cEEEEEeHHHHHHH
Q 004505 566 EEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDG---QQNCVLVVNGED---------FLEGILTYGDIKRC 628 (748)
Q Consensus 566 ~~~~L~~l~V~diM~~~~~~v~~~~tv~eal~~m~~~---~~~~lpVVd~~g---------~lvGiVt~~DL~~~ 628 (748)
.+..+.+-.|.+.+.++++....|.+-.|..++.... +...+.++|.++ ++.|.++.++++..
T Consensus 46 ~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~ 120 (122)
T smart00594 46 NRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTF 120 (122)
T ss_pred HHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHh
Confidence 4566888889999998888876666656666655544 556677888765 45677777777654
No 263
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.65 E-value=1.1e+02 Score=25.81 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=22.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 004505 84 APPEWALLLIGCLLGLASGLCVAFFNK 110 (748)
Q Consensus 84 ~~~~~~l~l~~iliG~~~Gl~~~~f~~ 110 (748)
.|.....+++++++|++.|++.++++.
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~re 81 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFLRE 81 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377788899999999999999888753
No 264
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=23.62 E-value=2.9e+02 Score=23.49 Aligned_cols=62 Identities=23% Similarity=0.450 Sum_probs=38.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhhhcCC-cceeecccCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 004505 268 ENSPPFTTAMIILASVISSTVSTVLLGT-QSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLV 333 (748)
Q Consensus 268 ~~~~~~~~~~~~~a~~~a~~v~~~~~g~-~~~~~~~~~~~~~~~~l~~~i~lGi~~Gl~g~~f~~~~ 333 (748)
++...|....+.+..+++..++|+-+|. ...|.+| + +-|..-++++-|...-+.+..|+-+.
T Consensus 10 ~~~kkFl~~l~~vfiia~~Vv~rAt~gGVi~qYniP-~---s~WttsMf~~Q~ami~vYS~VFT~L~ 72 (85)
T PF10749_consen 10 KEGKKFLLALAIVFIIAATVVGRATIGGVIEQYNIP-F---SEWTTSMFILQGAMILVYSIVFTILL 72 (85)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCC-h---hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555556666777888876654 3456665 2 33556677788877766666666543
No 265
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=23.43 E-value=8.7e+02 Score=25.41 Aligned_cols=17 Identities=18% Similarity=0.620 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004505 316 LILGMLCGVVSVVFTRL 332 (748)
Q Consensus 316 i~lGi~~Gl~g~~f~~~ 332 (748)
..+|+++|++|.+...+
T Consensus 13 ~~~Givg~LigiYla~~ 29 (264)
T PRK01030 13 MALGIVGGLIGIYLAYF 29 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999887654
No 266
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=1.4e+02 Score=26.80 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhccCHHHHHHHHHhhhHhhhhhh
Q 004505 210 VDIGKSCANGFSLMMENNRERKIALVAAGAASGIASG 246 (748)
Q Consensus 210 v~iga~~~~~~~~~~~~~~~~~~~l~~~g~aag~aa~ 246 (748)
+..|+.+|..+-+++...|--...++.+|++||+=-+
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4578889999988888877766677888998886433
No 267
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.76 E-value=6.5e+02 Score=28.48 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHhhhccCHHHHHHHHHhhhHhhhhhhcccchhhHHHHH
Q 004505 219 GFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAI 258 (748)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~ 258 (748)
.+++.+..+.+|-+.|=.+=...+++...+.|+||++|-.
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~ 222 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF 222 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh
Confidence 4567888888776666555666788889999999998744
No 268
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=20.83 E-value=1.4e+02 Score=26.16 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhcCCccee--ecccCCCCccchHHHHHHHHHHHHHHHH
Q 004505 278 IILASVISSTVSTVLLGTQSAF--TVPSYDLKSAAELPLYLILGMLCGVVSV 327 (748)
Q Consensus 278 ~~~a~~~a~~v~~~~~g~~~~~--~~~~~~~~~~~~l~~~i~lGi~~Gl~g~ 327 (748)
.+++++.+.......+-..+.+ ....++...+..+..++++|+++|.+..
T Consensus 49 gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~va~v~g~l~~ 100 (105)
T PF13493_consen 49 GLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDWITFAVFLVVALVTGYLAD 100 (105)
T ss_dssp -SHHHHHHHHHHHHTTS-SS----TT-SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccccchhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 3455665554443222222222 2222233345566677788888876554
Done!