Query 004505
Match_columns 748
No_of_seqs 306 out of 3762
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 18:43:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004505.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1811-1815//hhsearch_pdb/004505hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 1.0 1 1 625.8 41.8 564 83-728 3-629 (632)
2 1ots_A Voltage-gated CLC-type 1.0 1 1 504.4 46.1 409 85-524 30-450 (465)
3 3nd0_A SLL0855 protein; CLC fa 1.0 1 1 497.9 40.7 403 86-524 27-442 (466)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 1.0 1 1 492.6 46.4 398 85-512 15-426 (446)
5 3org_A CMCLC; transporter, tra 1.0 1 1 164.8 17.4 192 309-511 8-212 (632)
6 4esy_A CBS domain containing m 1.0 1 1 138.4 11.7 141 567-725 12-163 (170)
7 3k6e_A CBS domain protein; str 1.0 1 1 133.1 12.3 138 572-735 14-153 (156)
8 2o16_A Acetoin utilization pro 1.0 1 1 132.3 13.9 148 571-739 3-150 (160)
9 3lhh_A CBS domain protein; str 1.0 1 1 131.8 13.0 128 568-727 37-167 (172)
10 3pc3_A CG1753, isoform A; CBS, 1.0 1 1 131.7 11.3 134 567-726 378-513 (527)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=1.00 E-value=1 Score=625.84 Aligned_cols=564 Identities=20% Similarity=0.229 Sum_probs=432.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 898046999999999999999999999999999999760699550358886320014799999999999999999-----
Q 004505 83 SAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----- 157 (748)
Q Consensus 83 ~~~~~~~l~~~~~~iG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggl~vg~~----- 157 (748)
..+..+.++++++++|+++|+++++|+.++++..++..... .+ ... ..+|+.|+++|++++++++++
T Consensus 3 ~~~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-----~~--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (632)
T 3org_A 3 SLMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-----RL--AGR-FAGYILYVVSGVALCLLSTFWCAVLS 74 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--SCH-HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 45789999999999999999999999999999999999999-----97--425-47899999999999999999999618
Q ss_pred -----HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--HHC---CC
Q ss_conf -----88999998742078654467555442255999999999873067458734799999999999986--510---67
Q 004505 158 -----HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL--MME---NN 227 (748)
Q Consensus 158 -----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~l~sG~s~G~Egp~v~iga~~g~~~~~--~~~---~~ 227 (748)
+|++|++..+++.... . .++.+.++.+.|++++++++++|+|+|||||++|+|+++|+.+++ +|+ .+
T Consensus 75 p~a~GsGIp~v~~~l~g~~~~-~--~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~ 151 (632)
T 3org_A 75 TEAEGSGLPQMKSILSGFYDK-M--RSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTD 151 (632)
T ss_dssp GGGCBCSHHHHHHHTTTTHHH-H--GGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHCCCCC-C--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 766789989999999274212-4--5535299999999999999953877666542999999999987420121133589
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---EEECC--
Q ss_conf 8879999986667665431013012578999883100011269904689999999999999865307831---00035--
Q 004505 228 RERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQS---AFTVP-- 302 (748)
Q Consensus 228 ~~~~~~l~~~g~aagiaa~f~aPi~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~---~~~~~-- 302 (748)
+.+++.+++||+|||+||+||||++|++|++|+++.+|+.++ .++.+++|++++.+++.+.+... .|...
T Consensus 152 ~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~ 226 (632)
T 3org_A 152 RALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQA-----FWKGVLSALSGAIVYELLYTTPLVEAFEGTNFD 226 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTH-----HHHHHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 999999999898887899838840869999999888876877-----878999999999999996267652011466555
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CHHHH
Q ss_conf 5787740058899999999999999999999999999999876229851489865689999999562563245--73659
Q 004505 303 SYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW--GFTNV 380 (748)
Q Consensus 303 ~~~~~~~~~l~~~illGvl~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~~g~--G~~~i 380 (748)
....+++.++ +++++|++||++|.+|++++.++.+++ +++....++++++++++++++. +.+|+.++. +++.+
T Consensus 227 ~~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--l~~p~~~g~~~~~~~i 301 (632)
T 3org_A 227 ASDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYELR--MRHYPGTNRYFLVGVVALFASA--LQYPFRLFALDPRATI 301 (632)
T ss_dssp --CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSTTCCTHHHHHHHHHHHHH--HTTTC------CHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHH--HHHHHHHCCCCHHHHH
T ss_conf 4577768999-999999999999999999999999999--9864343489999999999999--9987875487679999
Q ss_pred HHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 9999429999--97418999999999999999852268755211579899877878999989998743079987774537
Q 004505 381 EEILHTGKTA--SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQ 458 (748)
Q Consensus 381 ~~~l~~~~~~--~~~~~~~l~~l~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~ 458 (748)
++++++.... ....+..++.++++|+++|.+|+|+|+|||+|+|++++||++|+++|.++..+ +|.. .+|+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~----~p~~---~~p~ 374 (632)
T 3org_A 302 NDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVV----FGNA---IVPG 374 (632)
T ss_dssp HHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHH----HCTT---SCHH
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----CCCC---CCHH
T ss_conf 99972786323453038999999999999999998289860100788999999999999999996----7765---6528
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99999999999973133289999999981683358889999999999998631034554134676420877789763200
Q 004505 459 AYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKN 538 (748)
Q Consensus 459 ~~al~G~aa~la~v~~aPls~vvl~~E~tg~~~~llP~l~a~~~a~~v~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~~ 538 (748)
.||++||+|++++++|+|++++ +++|+||++++++|+|+++++|+++++.++ ..+|+..++.++++...+.
T Consensus 375 ~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~----~~iY~~~~~~k~lp~l~~~---- 445 (632)
T 3org_A 375 SYAVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVLISVLLAVIVGNAFN----RSLYETLVLMKHLPYMPIL---- 445 (632)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHHHHHHHC----CCHHHHHHHHTTCCEEEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHCCCCCCCCC----
T ss_conf 9999999999999998799999-999992985679999999999999999847----8787899986489852233----
Q ss_pred HHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHH-CCCCCEEEEEECCCC
Q ss_conf 124311588752036664012330578996653333630013--68138528899999999987-179978899827980
Q 004505 539 EVLWRRTDGADELELSVVENAADSEAAEEMLLEELKVSRAMS--KDFVKVALTVTLKEAIESMK-DGQQNCVLVVNGEDF 615 (748)
Q Consensus 539 e~~~r~~~~~~~~~L~~l~~~~~~~~~~~~~l~~l~v~diM~--~~~~~v~~~~ti~eal~~l~-~~~~~~ipVVd~~g~ 615 (748)
+ ....++++|+|+|+ +++.+++++++++|+.+.|. +++++.+||+|++++
T Consensus 446 ------------------~---------~~~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~ 498 (632)
T 3org_A 446 ------------------R---------RDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGY 498 (632)
T ss_dssp ------------------C---------TTCCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCB
T ss_pred ------------------C---------CCCCCCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCE
T ss_conf ------------------4---------4420257699996057985585699949999999973589656999905996
Q ss_pred EEEEEEHHHHHHHHHCCCCC-CCC-----------C-C----CCCC-C------------------CCCHHHHHHHHCCC
Q ss_conf 89988489999997203589-998-----------9-8----7544-3------------------21000232230476
Q 004505 616 LEGILTYGDIKRCLSKLSSD-NSK-----------G-D----SIAS-D------------------VNTCLVSSICTRGI 659 (748)
Q Consensus 616 lvGiIt~~dL~~~l~~~~~~-~~~-----------~-~----~~~~-d------------------~~~~~V~dim~~~~ 659 (748)
++|+|+++|+.+.+.++..+ ..+ . + .... + ....+++|+|++++
T Consensus 499 lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~p 578 (632)
T 3org_A 499 LLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSP 578 (632)
T ss_dssp BCCEESHHHHTTTTTTC-------------------------------------------------------CCSCCCCC
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCHHHCCCC
T ss_conf 99998899999999987551425455445110368999975404578888431012312560376136432420105787
Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 556777772264799989999999998699761286236010105799089988776899999999983
Q 004505 660 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNH 728 (748)
Q Consensus 660 ~~~~~~~~~~~v~~d~~l~~a~~~m~~~~~~~LpVVd~~~~~~~~~~~~lvGiIt~~di~~~l~~~l~~ 728 (748)
.++++|+++.++.++|.+++.+++||+| +++++|+||++|+++.+.++.+.
T Consensus 579 ---------itV~~~~~l~ea~~~M~~~~i~~lpVve---------~G~lvGIVT~~Dll~~~~~~~~~ 629 (632)
T 3org_A 579 ---------IVVTSYSLVRQLHFLFVMLMPSMIYVTE---------RGKLVGIVEREDVAYGYSNSLEV 629 (632)
T ss_dssp ---------CEEETTCBHHHHHHHHHHTCCSEEEEEE---------TTEEEEEEEGGGTEECCCC----
T ss_pred ---------CEECCCCCHHHHHHHHHHCCCCEEEEEE---------CCEEEEEEEHHHHHHHHHHHHHH
T ss_conf ---------2446888599999999856887799988---------99899997544679887344788
No 2
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=1.00 E-value=1 Score=504.39 Aligned_cols=409 Identities=24% Similarity=0.341 Sum_probs=339.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHH------
Q ss_conf 804699999999999999999999999999999976069955035888632001479-9999999999999999------
Q 004505 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWH-RILLIPVTGGVIVGMM------ 157 (748)
Q Consensus 85 ~~~~~l~~~~~~iG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~~ggl~vg~~------ 157 (748)
...+.+++.++++|+++|+++.+|+..+++.+++.+...+.. .....+|| .++++|++++++++++
T Consensus 30 ~~~~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p 102 (465)
T 1ots_A 30 KTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-------ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP 102 (465)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 308999999999999999999999999999999999998640-------2345618999999999999999999998586
Q ss_pred ----HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CHHHHH
Q ss_conf ----889999987420786544675554422559999999998730674587347999999999999865106-788799
Q 004505 158 ----HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKI 232 (748)
Q Consensus 158 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~l~sG~s~G~Egp~v~iga~~g~~~~~~~~~-~~~~~~ 232 (748)
+|+++++..+++.. ++...++...|++++++++++|+|+|||||++|+|++++++++++++. ++.+++
T Consensus 103 ~a~GsGip~v~~~l~~~~-------~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l~~~~~~r 175 (465)
T 1ots_A 103 EAGGSGIPEIEGALEDQR-------PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARH 175 (465)
T ss_dssp GGSSCSHHHHHHHHTTCS-------CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 446999679999982899-------8872899999999999999518776775529999999999999984369889999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHH
Q ss_conf 99986667665431013012578999883100011269904689999999999999865307831000355787740058
Q 004505 233 ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAEL 312 (748)
Q Consensus 233 ~l~~~g~aagiaa~f~aPi~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l 312 (748)
.+++||+|||++|+||||++|++|++|++.++++.+.. ..+++++++++++.+++.++|.++.|.++.++..++.++
T Consensus 176 ~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~G~~~~f~~~~~~~~~~~~l 252 (465)
T 1ots_A 176 TLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLI---SIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTL 252 (465)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCC---CHHHHHHHHHHHHHHHHHHSCSCCSSCCCCCCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 99999999999999788459999999998986046889---999999999999999999859986461477777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 89999999999999999999999999999987622985148986568999999956256324573659999942999997
Q 004505 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASA 392 (748)
Q Consensus 313 ~~~illGvl~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~~g~G~~~i~~~l~~~~~~~~ 392 (748)
++++++|++||++|.+|++.+.+.+++++++++...+++++++++++++++++++++|+++|+|++.+++++++.
T Consensus 253 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~lG~G~~~i~~~~~~~----- 327 (465)
T 1ots_A 253 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN----- 327 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCSTTHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC-----
T ss_conf 999999999999999999999999999976346871657999999999999999986725289299999998488-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 41899999999999999985226875521157989987787899998999874307998777453799999999999973
Q 004505 393 PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASV 472 (748)
Q Consensus 393 ~~~~~l~~l~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~al~G~aa~la~v 472 (748)
...+.++.+.++|+++|.+|+++|+|||+|+|++++|+++|+++|.++..+ +|.. ..+|+.|+++||+|+++++
T Consensus 328 ~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~----~p~~--~~~~~~~alvGmaa~~a~v 401 (465)
T 1ots_A 328 FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL----FPQY--HLEAGTFAIAGMGALLAAS 401 (465)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHH----CGGG--TCCHHHHHHHHHTHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----CCCC--CCCHHHHHHHHHHHHHHHH
T ss_conf 349999999999999999998489871220788999999999999999997----7765--4567999999999999999
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 1332899999999816833588899999999999986310345541346764
Q 004505 473 CSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTL 524 (748)
Q Consensus 473 ~~aPls~vvl~~E~tg~~~~llP~l~a~~~a~~v~~~~~~~~~~~~~~~~~~ 524 (748)
+|+|+|++++++|+||++++++|+|+++++|+++++.+++ .++|+..++
T Consensus 402 ~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~~~---~~iY~~~l~ 450 (465)
T 1ots_A 402 IRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGG---KPLYSAILA 450 (465)
T ss_dssp SCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHH
T ss_conf 8789999999999939877999999999999999999679---985999999
No 3
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=1.00 E-value=1 Score=497.89 Aligned_cols=403 Identities=23% Similarity=0.307 Sum_probs=332.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHH-----
Q ss_conf 04699999999999999999999999999999976069955035888632001479---9999999999999999-----
Q 004505 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWH---RILLIPVTGGVIVGMM----- 157 (748)
Q Consensus 86 ~~~~l~~~~~~iG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~p~~ggl~vg~~----- 157 (748)
....+++.++++|+++|+++++|+..+++.+++.+...... ...+|+ .+++.+.+++++++++
T Consensus 27 ~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~ 97 (466)
T 3nd0_A 27 LHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL---------APIPPLAWLVTALISGGMVALSFWLMKRFA 97 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTSCTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 29999999999999999999999999999999999987440---------224179999999999999999999999977
Q ss_pred -----HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf -----889999987420786544675554422559999999998730674587347999999999999865106788799
Q 004505 158 -----HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKI 232 (748)
Q Consensus 158 -----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~l~sG~s~G~Egp~v~iga~~g~~~~~~~~~~~~~~~ 232 (748)
+|+++++..+++.. ++.+.++...|++++++++++|+|+|||||++|+|++++++++++++.++.+++
T Consensus 98 p~a~GsGIp~v~~~l~g~~-------~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~~~~~~~r 170 (466)
T 3nd0_A 98 PDTSGSGIPQIEGHLEGKL-------PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQENQR 170 (466)
T ss_dssp GGGSBCSHHHHHHHTTSSS-------CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 7767899899999981888-------875289999999999999955877777656999999999999988099866899
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHH
Q ss_conf 99986667665431013012578999883100011269904689999999999999865307831000355787740058
Q 004505 233 ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAEL 312 (748)
Q Consensus 233 ~l~~~g~aagiaa~f~aPi~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l 312 (748)
.+++||+|||++|+||||++|++|++|++.+.++.+.. ..+|+++++++++.+++.++++++.|.++.++.+++.++
T Consensus 171 ~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~g~~~~f~~~~~~~~~~~~l 247 (466)
T 3nd0_A 171 ILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTL---AYHSLLFGCVMATIILRMIRGQSAIISLTEFKRVPLDSL 247 (466)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCT---THHHHHHHHHHHHHHHHHHTCSSCSSCCTTCCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHH
T ss_conf 99999999999999488268789998753143508999---999999999999999999758887130577787899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 89999999999999999999999999999987622985148986568999999956256324573659999942999997
Q 004505 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASA 392 (748)
Q Consensus 313 ~~~illGvl~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~~g~G~~~i~~~l~~~~~~~~ 392 (748)
++++++|++||++|.+|++.+.+++++++++++ .+++++++++++++|++++++|+.+|+|++.+++++++.
T Consensus 248 ~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~~---~~~~~~~~l~g~~~g~l~~~~p~~~G~G~~~i~~~~~~~----- 319 (466)
T 3nd0_A 248 WMFIILGILFGVMGYTFNRGLFKVLDWFDRLPP---LATKWKGFLLGSIIGILSLFPLPLTDGGDNAVLWAFNSQ----- 319 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHHHHHTTSSSSCSSSSHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC-----
T ss_conf 999999999999999999999999999987054---647999999999999999997877399399999998489-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 41899999999999999985226875521157989987787899998999874307998777453799999999999973
Q 004505 393 PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASV 472 (748)
Q Consensus 393 ~~~~~l~~l~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~al~G~aa~la~v 472 (748)
...+.++.+.++|+++|.+|+++|+|||+|+|++++|+++|+++|.++.. .+|.. ..+|+.|+++||+|+++++
T Consensus 320 ~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~----~~p~~--~~~~~~~a~vGmaa~~a~v 393 (466)
T 3nd0_A 320 SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHL----LFPSQ--IPEPAVMAIAGMGALVAAT 393 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHH----HCTTT--CSSTHHHHHHTTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH----HCCCC--CCCHHHHHHHHHHHHHHHH
T ss_conf 51999999999999999999827998754057899999999999999998----67765--5678999999999999999
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 1332899999999816833588899999999999986310345541346764
Q 004505 473 CSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTL 524 (748)
Q Consensus 473 ~~aPls~vvl~~E~tg~~~~llP~l~a~~~a~~v~~~~~~~~~~~~~~~~~~ 524 (748)
+|+|+|++++++|+||++++++|+|+++++|+++++.+.+ .++|+..++
T Consensus 394 ~~aPlt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~---~~iY~~~l~ 442 (466)
T 3nd0_A 394 VRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGG---KPIYTVLLE 442 (466)
T ss_dssp HSCHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHH
T ss_conf 8449999999999978767899999999999999998189---984999999
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=1.00 E-value=1 Score=492.63 Aligned_cols=398 Identities=24% Similarity=0.359 Sum_probs=323.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHH----
Q ss_conf 80469999999999999999999999999999997606995503588863200147999---99999999999999----
Q 004505 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRI---LLIPVTGGVIVGMM---- 157 (748)
Q Consensus 85 ~~~~~l~~~~~~iG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~p~~ggl~vg~~---- 157 (748)
.....+++.++++|+++|+++.+|+..+++.+++.+...... ...+|+.+ ++.+.+++++++++
T Consensus 15 ~~~~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (446)
T 4ene_A 15 KTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT---------ADNYPLLLTVAFLCSAVLAMFGYFLVRKY 85 (446)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------SSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 435999999999999999999999999999999999998751---------21205999999999999999999999996
Q ss_pred ------HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf ------88999998742078654467555442255999999999873067458734799999999999986510678879
Q 004505 158 ------HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERK 231 (748)
Q Consensus 158 ------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~l~sG~s~G~Egp~v~iga~~g~~~~~~~~~~~~~~ 231 (748)
+|++|++..+++. .++.+.++...|++++++++++|+|+|||||++|+|++++++++++++.+++++
T Consensus 86 ~p~a~GsGip~v~~~l~~~-------~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~~~~~~ 158 (446)
T 4ene_A 86 APEAGGSGIPEIEGALEDQ-------RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEA 158 (446)
T ss_dssp CGGGSSCSHHHHHHHHHTC-------SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHH
T ss_pred CCCCCCCCHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 7645789978999998088-------765429999999999999995487667753098999999999998819997999
Q ss_pred H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf 9-999866676654310130125789998831000112699046899999999999998653078310003557877400
Q 004505 232 I-ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAA 310 (748)
Q Consensus 232 ~-~l~~~g~aagiaa~f~aPi~g~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~ 310 (748)
| .+++||+|||++|+||||++|++|++|++.++++... -..+++++++++++.+++.++++++.|.++.++..++.
T Consensus 159 r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~---~~~~~~~~as~~a~~v~~~~~g~~~~~~~~~~~~~~~~ 235 (446)
T 4ene_A 159 RHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTL---ISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLN 235 (446)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCC---CCHHHHHHHHHHHHHHHHHTTTTCCSCCCCCCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH
T ss_conf 999999899999999818962578998999874166567---79999999999999999997488860325777766789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 58899999999999999999999999999999876229851489865689999999562563245736599999429999
Q 004505 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTA 390 (748)
Q Consensus 311 ~l~~~illGvl~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~~g~G~~~i~~~l~~~~~~ 390 (748)
++++++++|++||++|.+|++.+.+.++++++++.+...++++.+.++++++|++++++|+.+|+|++.+++.+++.
T Consensus 236 ~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~~G~G~~~i~~~~~~~--- 312 (446)
T 4ene_A 236 TLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN--- 312 (446)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCCSTHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC---
T ss_conf 99999999999999999999999999999986133412699999999999999999983765289399999987488---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 97418999999999999999852268755211579899877878999989998743079987774537999999999999
Q 004505 391 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLA 470 (748)
Q Consensus 391 ~~~~~~~l~~l~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~al~G~aa~la 470 (748)
...+.++.+.++|+++|.+|+++|+|||+|+|++++||++|+++|.++..+ +|.. ..+|+.|+++||+|+++
T Consensus 313 --~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~----~p~~--~~~~~~~a~vGmaa~~a 384 (446)
T 4ene_A 313 --FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL----FPQY--HLEAGTFAIAGMGALLA 384 (446)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHH----CGGG--TCCHHHHHHHHHTHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----CCCC--CCCHHHHHHHHHHHHHH
T ss_conf --419999999999999999998169986325888999999999999999996----7765--56789999999999999
Q ss_pred HHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 731332899999999816833588899999999999986310
Q 004505 471 SVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQ 512 (748)
Q Consensus 471 ~v~~aPls~vvl~~E~tg~~~~llP~l~a~~~a~~v~~~~~~ 512 (748)
+++|+|+|++++++|+||++++++|+|+++++|+++++.+.+
T Consensus 385 ~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~~ 426 (446)
T 4ene_A 385 ASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGG 426 (446)
T ss_dssp HHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 997408999999999978866899999999999999998489
No 5
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=1.00 E-value=1 Score=164.83 Aligned_cols=192 Identities=18% Similarity=0.070 Sum_probs=141.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----C-CCHHHHHHHHHHHHHHHH-HHCCCCCCCCHHHHHH
Q ss_conf 005889999999999999999999999999999987622----9-851489865689999999-5625632457365999
Q 004505 309 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF----G-LPPVVCPALGGLGAGIIA-LRYPGILYWGFTNVEE 382 (748)
Q Consensus 309 ~~~l~~~illGvl~Gl~g~~f~~~~~~~~~~~~~~~~~~----~-~~~~~~~~iggl~~g~i~-~~~P~~~g~G~~~i~~ 382 (748)
+..+.+.+++|+++|+++.+|..++.++.+++..+.+.. . ..+++.|++++++.+.+. .+.|+..|+|-++++.
T Consensus 8 ~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~ 87 (632)
T 3org_A 8 LRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKS 87 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99999999999999999999999999999999999997425478999999999999999999996187667899899999
Q ss_pred HHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCHH
Q ss_conf 994299--99974189999999999999998522687552115798998778789999--89998743079987774537
Q 004505 383 ILHTGK--TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGG--SAAEIINSAIPGNVAVAEPQ 458 (748)
Q Consensus 383 ~l~~~~--~~~~~~~~~l~~l~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~--~~~~~~~~~~p~~~~~~~~~ 458 (748)
.++... ...... ....+.|++.+.+++++|.+.|.+.|++.+|+++|..++. .+.... .. ..+..
T Consensus 88 ~l~g~~~~~~~~~~----~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~----~~---~~~~r 156 (632)
T 3org_A 88 ILSGFYDKMRSALE----LRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELC----TD---RALRL 156 (632)
T ss_dssp HTTTTHHHHGGGGS----HHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHH----HS---HHHHH
T ss_pred HHHCCCCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC----CC---HHHHH
T ss_conf 99274212455352----999999999999999538776665429999999999874201211335----89---99999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CC--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999731332899999999816-83--358889999999999998631
Q 004505 459 AYALVGMAATLASVCSVPLTSVLLLFELTR-DY--RILLPLMGAVGLAIWVPSVAN 511 (748)
Q Consensus 459 ~~al~G~aa~la~v~~aPls~vvl~~E~tg-~~--~~llP~l~a~~~a~~v~~~~~ 511 (748)
.+..||+||.+++++++|++++++++|... ++ ..++|.+++++++..+...++
T Consensus 157 ~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 212 (632)
T 3org_A 157 QTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLY 212 (632)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998988878998388408699999998888768778789999999999999962
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=1.00 E-value=1 Score=138.37 Aligned_cols=141 Identities=20% Similarity=0.262 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCC------CCCCC
Q ss_conf 966533336300136813852889999999998717997889982798089988489999997203589------99898
Q 004505 567 EMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSD------NSKGD 640 (748)
Q Consensus 567 ~~~l~~l~v~diM~~~~~~v~~~~ti~eal~~l~~~~~~~ipVVd~~g~lvGiIt~~dL~~~l~~~~~~------~~~~~ 640 (748)
...++.++|+|+|++++.++.+++++.++.+.|.+++++++||+|++++++|+||..|+.+........ .....
T Consensus 12 ~~~l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~ 91 (170)
T 4esy_A 12 ARAIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIP 91 (170)
T ss_dssp HHHHHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSC
T ss_pred HHHHCCCCHHHHCCCCCCEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHCCC
T ss_conf 99875979799567998378891939999999998598199998499338888879999987751244311344420231
Q ss_pred -----CCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCEEEEEEEH
Q ss_conf -----754432100023223047655677777226479998999999999869976128623601010579908998877
Q 004505 641 -----SIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHY 715 (748)
Q Consensus 641 -----~~~~d~~~~~V~dim~~~~~~~~~~~~~~~v~~d~~l~~a~~~m~~~~~~~LpVVd~~~~~~~~~~~~lvGiIt~ 715 (748)
.........+++++|++++ .++++++++.++.++|.+++.+++||+| +++++|+||+
T Consensus 92 ~~~~~~~~~~~~~~~v~~im~~~~---------~tv~~~~~l~~a~~~m~~~~~~~lpVvd---------~g~lvGivt~ 153 (170)
T 4esy_A 92 APEVEHLFETGRKLTASAVMTQPV---------VTAAPEDSVGSIADQMRRHGIHRIPVVQ---------DGVPVGIVTR 153 (170)
T ss_dssp HHHHHHHHHHHTTCBHHHHCBCCS---------CCBCTTSBHHHHHHHHHHTTCSEEEEEE---------TTEEEEEEEH
T ss_pred HHHHHHHHCCCCCCCHHHHCCCCC---------CCCCCCHHHHHHHHHHHHCCCCEEEEEE---------CCEEEEEEEH
T ss_conf 466776531334565125125686---------4678400499999999983995899999---------9999999989
Q ss_pred HHHHHHHHHH
Q ss_conf 6899999999
Q 004505 716 DSIWNCLREE 725 (748)
Q Consensus 716 ~di~~~l~~~ 725 (748)
.|+++.+.++
T Consensus 154 ~Dil~~l~~~ 163 (170)
T 4esy_A 154 RDLLKLLLLE 163 (170)
T ss_dssp HHHTTTSCCC
T ss_pred HHHHHHHHHC
T ss_conf 9999999735
No 7
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=133.10 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=113.8
Q ss_pred HHHHHHCCCC--CCEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 3336300136--81385288999999999871799788998279808998848999999720358999898754432100
Q 004505 572 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTC 649 (748)
Q Consensus 572 ~l~v~diM~~--~~~~v~~~~ti~eal~~l~~~~~~~ipVVd~~g~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~d~~~~ 649 (748)
..+++++|++ ++.++.+++++.++++.|.+++++++||+|++++++|+||..|+.+.+...... .......
T Consensus 14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~-------~~~~~~~ 86 (156)
T 3k6e_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLS-------QEIMADT 86 (156)
T ss_dssp HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCC-------HHHHTTS
T ss_pred HCCHHHHCCCHHHEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHHHHCCCC-------CCCCCCC
T ss_conf 361878486343769998969799999999985984899993998099999805004444301243-------0103552
Q ss_pred HHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 02322304765567777722647999899999999986997612862360101057990899887768999999999831
Q 004505 650 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNHR 729 (748)
Q Consensus 650 ~V~dim~~~~~~~~~~~~~~~v~~d~~l~~a~~~m~~~~~~~LpVVd~~~~~~~~~~~~lvGiIt~~di~~~l~~~l~~~ 729 (748)
+++++|++++ .++++++++.++.++|.+++ .+||||+ +|+++|+||+.|+++.+...++..
T Consensus 87 ~v~~im~~~~---------~~v~~~~~l~~~~~~m~~~~--~lpVVd~--------~g~l~GiiT~~Dil~~~~~~~~~~ 147 (156)
T 3k6e_A 87 DIVHMTKTDV---------AVVSPDFTITEVLHKLVDES--FLPVVDA--------EGIFQGIITRKSILKAVNALLHDF 147 (156)
T ss_dssp BGGGTCBCSC---------CCBCTTCCHHHHHHHTTTSS--EEEEECT--------TSBEEEEEEHHHHHHHHHHHSCC-
T ss_pred CHHHHHCCCC---------EECCCCCHHHHHHHHHHHCC--CEEEEEC--------CCEEEEEEEHHHHHHHHHHHHCCC
T ss_conf 7778414785---------12246328999999999769--7499922--------997999999999999999986121
Q ss_pred HHHCCC
Q ss_conf 100124
Q 004505 730 KSVYQH 735 (748)
Q Consensus 730 ~~~~~~ 735 (748)
...|+.
T Consensus 148 ~~e~~i 153 (156)
T 3k6e_A 148 SKEYEI 153 (156)
T ss_dssp ------
T ss_pred CHHHEE
T ss_conf 311347
No 8
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=1.00 E-value=1 Score=132.35 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=119.8
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 33336300136813852889999999998717997889982798089988489999997203589998987544321000
Q 004505 571 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL 650 (748)
Q Consensus 571 ~~l~v~diM~~~~~~v~~~~ti~eal~~l~~~~~~~ipVVd~~g~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~d~~~~~ 650 (748)
..++++++|.+++.++.+++++.++.+.|.+++.+.+||+|++++++|+|+..|+.+.+.........+ .......+
T Consensus 3 ~~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~---~~~~~~~~ 79 (160)
T 2o16_A 3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQG---DSLAFETP 79 (160)
T ss_dssp CCCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC------------CCCB
T ss_pred CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCCC---CCHHCCCC
T ss_conf 768099980689868789995999999999759987889858995899973999887888764001444---31020168
Q ss_pred HHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 23223047655677777226479998999999999869976128623601010579908998877689999999998311
Q 004505 651 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNHRK 730 (748)
Q Consensus 651 V~dim~~~~~~~~~~~~~~~v~~d~~l~~a~~~m~~~~~~~LpVVd~~~~~~~~~~~~lvGiIt~~di~~~l~~~l~~~~ 730 (748)
++++|++++ .++++++++.++.+.|.+.+.+.+||+| +++++|+||+.|+++.+.+.++.+.
T Consensus 80 v~~im~~~~---------~~v~~~~~l~~a~~~m~~~~~~~lpVvd---------~g~lvGiit~~dil~~~~~~~~~~~ 141 (160)
T 2o16_A 80 LFEVMHTDV---------TSVAPQAGLKESAIYMQKHKIGCLPVVA---------KDVLVGIITDSDFVTIAINLLELQE 141 (160)
T ss_dssp HHHHSCSCE---------EEBCTTSBHHHHHHHHHHTTCSCEEEEE---------TTEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCC---------EEECCCCCHHHHHHHHHHHCCCEEEEEE---------CCEEEEEEEHHHHHHHHHHHHCCCC
T ss_conf 999716797---------6888999899999999970988789998---------9988999887999999998723102
Q ss_pred HHCCCCCCC
Q ss_conf 001244334
Q 004505 731 SVYQHSKDK 739 (748)
Q Consensus 731 ~~~~~~~~~ 739 (748)
+....++++
T Consensus 142 ~~~~~~~~~ 150 (160)
T 2o16_A 142 ESEPDELDE 150 (160)
T ss_dssp C--------
T ss_pred CCCCCCCCH
T ss_conf 138741143
No 9
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=1.00 E-value=1 Score=131.82 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=112.9
Q ss_pred HHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHHCCCCCEEEEEECC-CCEEEEEEHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6653333630013--681385288999999999871799788998279-8089988489999997203589998987544
Q 004505 568 MLLEELKVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 644 (748)
Q Consensus 568 ~~l~~l~v~diM~--~~~~~v~~~~ti~eal~~l~~~~~~~ipVVd~~-g~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~ 644 (748)
..+..++++++|+ +++.++++++++.++++.|.+++++.+||+|++ ++++|+|+..|+.+.+...
T Consensus 37 ~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~------------ 104 (172)
T 3lhh_A 37 FRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG------------ 104 (172)
T ss_dssp ------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT------------
T ss_pred HCCCCCCHHHHCCCHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEHHHHHHHHHHC------------
T ss_conf 24088799893856889589718998999999999679987999958998099999999999887624------------
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCEEEEEEEHHHHHHHHHH
Q ss_conf 32100023223047655677777226479998999999999869976128623601010579908998877689999999
Q 004505 645 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 645 d~~~~~V~dim~~~~~~~~~~~~~~~v~~d~~l~~a~~~m~~~~~~~LpVVd~~~~~~~~~~~~lvGiIt~~di~~~l~~ 724 (748)
...+++++| +++ .++++++++.++.+.|.+++.+.+||+|+ +++++|+||+.|+++.+..
T Consensus 105 --~~~~v~~im-~~~---------~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--------~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 105 --ERLELVDLV-KNC---------NFVPNSLSGMELLEHFRTTGSQMVFVVDE--------YGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp --CCCCGGGGC-BCC---------EEEETTCCHHHHHHHHHHHTCSEEEEECT--------TSCEEEEEEHHHHHHHHHT
T ss_pred --CCCCHHHHH-CCC---------EEECCCCCHHHHHHHHHHCCCEEEEEEEC--------CCCEEEEEEHHHHHHHHHC
T ss_conf --765599985-489---------37589798999999998729849999908--------9998999648999999839
Q ss_pred HHH
Q ss_conf 998
Q 004505 725 EVN 727 (748)
Q Consensus 725 ~l~ 727 (748)
++.
T Consensus 165 ~~~ 167 (172)
T 3lhh_A 165 EFF 167 (172)
T ss_dssp TCC
T ss_pred CCC
T ss_conf 775
No 10
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=1.00 E-value=1 Score=131.68 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHCCCCCCEEECCC-CCHHHHHHHHHCCCCCEEEEEE-CCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 96653333630013681385288-9999999998717997889982-798089988489999997203589998987544
Q 004505 567 EMLLEELKVSRAMSKDFVKVALT-VTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 644 (748)
Q Consensus 567 ~~~l~~l~v~diM~~~~~~v~~~-~ti~eal~~l~~~~~~~ipVVd-~~g~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~ 644 (748)
..++...+|+++|++++.++.++ +++.++++.|.+++++.+||+| ++++++|+||..|+++.+.....
T Consensus 378 ~~~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~---------- 447 (527)
T 3pc3_A 378 GHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR---------- 447 (527)
T ss_dssp CCTTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC----------
T ss_pred CCCCCCCCHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEHHHHHHHHHHCCC----------
T ss_conf 5654688699937689869808978199999999985998677997899979999889999999970567----------
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCEEEEEEEHHHHHHHHHH
Q ss_conf 32100023223047655677777226479998999999999869976128623601010579908998877689999999
Q 004505 645 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 724 (748)
Q Consensus 645 d~~~~~V~dim~~~~~~~~~~~~~~~v~~d~~l~~a~~~m~~~~~~~LpVVd~~~~~~~~~~~~lvGiIt~~di~~~l~~ 724 (748)
..+.+|+++|++++ .++++++++.++.++|.+.+ .+||||+.. ..+++++|+||+.|+++.+.+
T Consensus 448 -~~~~~V~~im~~~~---------~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~----~~~g~lvGIVT~~Dll~~l~~ 511 (527)
T 3pc3_A 448 -QQSDPAIKALNKRV---------IRLNESEILGKLARVLEVDP--SVLILGKNP----AGKVELKALATKLDVTTFIAA 511 (527)
T ss_dssp -CTTSBGGGGEETTC---------CEEETTSBHHHHHHHHTTCS--EEEEEEECS----SSCEEEEEEEEHHHHHHHHHT
T ss_pred -CCCCCHHHHHCCCC---------EEECCCCCHHHHHHHHHHCC--EEEEEECCC----CCCCEEEEEEEHHHHHHHHHH
T ss_conf -68880899951898---------18899891999999982588--899991786----668828999878999999984
Q ss_pred HH
Q ss_conf 99
Q 004505 725 EV 726 (748)
Q Consensus 725 ~l 726 (748)
+.
T Consensus 512 ~~ 513 (527)
T 3pc3_A 512 GK 513 (527)
T ss_dssp CC
T ss_pred CC
T ss_conf 45
Done!