Query 004508
Match_columns 748
No_of_seqs 327 out of 816
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 00:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 2E-178 5E-183 1503.4 64.4 678 8-736 2-716 (719)
2 PF07059 DUF1336: Protein of u 100.0 7.1E-74 1.5E-78 588.6 18.4 207 518-725 1-227 (227)
3 cd08904 START_STARD6-like Lipi 100.0 1.3E-33 2.7E-38 286.9 22.8 182 173-364 21-203 (204)
4 cd08868 START_STARD1_3_like Ch 100.0 4.8E-33 1E-37 283.0 24.5 186 169-366 19-207 (208)
5 cd08869 START_RhoGAP C-termina 100.0 3.4E-32 7.4E-37 275.2 22.9 177 173-366 18-196 (197)
6 cd08906 START_STARD3-like Chol 100.0 6.2E-32 1.3E-36 275.8 22.0 186 169-366 20-208 (209)
7 cd08903 START_STARD5-like Lipi 100.0 2.8E-31 6E-36 270.8 23.4 184 172-365 20-206 (208)
8 cd08909 START_STARD13-like C-t 100.0 2.7E-31 5.8E-36 269.5 20.1 173 175-365 28-203 (205)
9 cd08874 START_STARD9-like C-te 100.0 4E-31 8.6E-36 268.9 21.4 188 162-366 10-205 (205)
10 cd08867 START_STARD4_5_6-like 100.0 8.2E-31 1.8E-35 266.3 22.6 182 173-364 21-205 (206)
11 cd08871 START_STARD10-like Lip 100.0 9E-31 1.9E-35 268.9 22.0 181 171-366 20-202 (222)
12 cd08914 START_STARD15-like Lip 100.0 6.3E-31 1.4E-35 271.0 20.3 182 148-344 26-214 (236)
13 cd08873 START_STARD14_15-like 100.0 2.9E-30 6.3E-35 266.5 21.4 179 145-336 22-206 (235)
14 smart00234 START in StAR and p 100.0 8.3E-30 1.8E-34 256.8 23.5 182 171-365 16-201 (206)
15 cd08872 START_STARD11-like Cer 100.0 3.7E-30 8.1E-35 267.0 21.0 181 173-368 25-228 (235)
16 cd08905 START_STARD1-like Chol 100.0 3.6E-30 7.8E-35 262.8 20.0 183 172-366 23-208 (209)
17 cd08911 START_STARD7-like Lipi 100.0 6E-30 1.3E-34 260.7 21.4 180 172-364 19-204 (207)
18 cd08902 START_STARD4-like Lipi 100.0 5.7E-30 1.2E-34 256.6 19.9 180 172-364 21-201 (202)
19 cd08913 START_STARD14-like Lip 100.0 2.5E-29 5.5E-34 261.0 21.8 192 147-351 28-226 (240)
20 cd08907 START_STARD8-like C-te 100.0 5.9E-29 1.3E-33 249.8 18.1 175 173-365 26-203 (205)
21 cd08910 START_STARD2-like Lipi 100.0 9.8E-29 2.1E-33 251.9 19.0 178 172-365 23-205 (207)
22 cd08870 START_STARD2_7-like Li 100.0 6.7E-28 1.4E-32 245.8 21.0 178 174-365 22-207 (209)
23 cd08908 START_STARD12-like C-t 100.0 3.9E-28 8.5E-33 246.5 19.1 172 175-365 28-202 (204)
24 PF01852 START: START domain; 100.0 2.9E-27 6.4E-32 237.8 22.5 186 171-368 16-204 (206)
25 cd00177 START Lipid-binding ST 100.0 9.9E-27 2.1E-31 229.1 22.9 168 174-352 15-183 (193)
26 cd08876 START_1 Uncharacterize 99.9 1.1E-26 2.3E-31 232.7 21.6 178 172-364 15-194 (195)
27 cd08877 START_2 Uncharacterize 99.9 1.4E-25 3E-30 229.4 17.5 188 164-365 12-213 (215)
28 KOG2761 START domain-containin 99.9 8E-22 1.7E-26 199.1 18.2 164 170-343 25-193 (219)
29 KOG1739 Serine/threonine prote 99.5 6.3E-15 1.4E-19 161.1 8.0 168 163-340 392-578 (611)
30 cd01251 PH_centaurin_alpha Cen 99.5 3E-14 6.5E-19 130.3 10.9 98 12-117 1-101 (103)
31 cd08875 START_ArGLABRA2_like C 99.5 5.9E-13 1.3E-17 137.3 16.8 129 201-337 57-199 (229)
32 cd01260 PH_CNK Connector enhan 99.5 1.7E-13 3.7E-18 122.9 10.8 95 11-115 1-96 (96)
33 cd01246 PH_oxysterol_bp Oxyste 99.4 8.2E-13 1.8E-17 115.8 10.8 91 12-115 1-91 (91)
34 cd01233 Unc104 Unc-104 pleckst 99.4 2.8E-12 6.1E-17 116.5 10.7 96 10-116 2-98 (100)
35 cd01265 PH_PARIS-1 PARIS-1 ple 99.4 2.8E-12 6E-17 115.7 10.5 91 12-115 1-93 (95)
36 cd01257 PH_IRS Insulin recepto 99.4 4.5E-12 9.7E-17 115.8 11.1 91 10-114 2-100 (101)
37 cd01238 PH_Tec Tec pleckstrin 99.4 3.9E-12 8.4E-17 117.0 10.5 99 12-114 2-105 (106)
38 cd01252 PH_cytohesin Cytohesin 99.3 7.8E-12 1.7E-16 117.9 12.1 97 11-118 1-115 (125)
39 cd08864 SRPBCC_DUF3074 DUF3074 99.3 9.8E-12 2.1E-16 127.4 13.7 111 229-342 64-186 (208)
40 cd01247 PH_GPBP Goodpasture an 99.3 9.4E-12 2E-16 111.5 10.8 90 12-114 1-90 (91)
41 cd01235 PH_SETbf Set binding f 99.3 1.2E-11 2.5E-16 111.4 11.0 95 12-116 1-101 (101)
42 PF00169 PH: PH domain; Inter 99.3 1.9E-11 4.2E-16 107.4 10.6 100 11-116 2-103 (104)
43 cd01264 PH_melted Melted pleck 99.3 2.5E-11 5.4E-16 110.8 10.1 99 12-116 2-101 (101)
44 cd01266 PH_Gab Gab (Grb2-assoc 99.3 2.9E-11 6.3E-16 111.3 10.2 96 13-115 2-107 (108)
45 cd01250 PH_centaurin Centaurin 99.2 5.3E-11 1.2E-15 104.9 10.2 94 12-115 1-94 (94)
46 cd01241 PH_Akt Akt pleckstrin 99.2 5.6E-11 1.2E-15 108.6 10.1 94 10-115 1-101 (102)
47 cd01236 PH_outspread Outspread 99.2 7.4E-11 1.6E-15 108.4 10.1 94 12-113 1-101 (104)
48 smart00233 PH Pleckstrin homol 99.2 2.2E-10 4.8E-15 98.7 12.1 100 11-116 2-101 (102)
49 cd01263 PH_anillin Anillin Ple 99.1 3.5E-10 7.6E-15 106.7 10.3 104 10-115 1-122 (122)
50 cd01254 PH_PLD Phospholipase D 99.0 9.5E-10 2.1E-14 103.6 10.0 97 12-115 1-121 (121)
51 cd01245 PH_RasGAP_CG5898 RAS G 99.0 7.6E-10 1.7E-14 100.6 7.8 92 13-114 2-97 (98)
52 KOG0930 Guanine nucleotide exc 99.0 1.5E-09 3.2E-14 112.9 8.9 98 9-118 259-377 (395)
53 cd01244 PH_RasGAP_CG9209 RAS_G 98.9 7E-09 1.5E-13 94.4 10.0 83 23-115 16-98 (98)
54 cd01219 PH_FGD FGD (faciogenit 98.9 1.2E-08 2.7E-13 93.0 11.1 97 11-118 3-101 (101)
55 cd01253 PH_beta_spectrin Beta- 98.9 1.2E-08 2.7E-13 92.7 11.1 96 12-115 1-104 (104)
56 cd01256 PH_dynamin Dynamin ple 98.9 8.3E-09 1.8E-13 92.6 9.4 97 11-115 2-104 (110)
57 PF15413 PH_11: Pleckstrin hom 98.9 5.6E-09 1.2E-13 97.1 8.8 95 12-115 1-112 (112)
58 cd00900 PH-like Pleckstrin hom 98.8 1.9E-08 4.2E-13 86.5 10.1 97 12-115 1-99 (99)
59 cd01237 Unc112 Unc-112 pleckst 98.8 8.8E-09 1.9E-13 94.5 8.3 91 21-116 12-103 (106)
60 cd07813 COQ10p_like Coenzyme Q 98.8 3.2E-08 7E-13 93.5 11.9 134 207-365 2-136 (138)
61 cd00821 PH Pleckstrin homology 98.8 2.3E-08 5.1E-13 85.3 8.8 95 12-115 1-96 (96)
62 cd08866 SRPBCC_11 Ligand-bindi 98.6 6.7E-07 1.4E-11 84.7 14.3 141 207-365 2-143 (144)
63 cd01220 PH_CDEP Chondrocyte-de 98.5 9.6E-07 2.1E-11 80.6 10.6 95 11-117 3-98 (99)
64 PF15409 PH_8: Pleckstrin homo 98.5 2.3E-07 5.1E-12 82.9 6.2 84 14-115 1-88 (89)
65 cd01230 PH_EFA6 EFA6 Pleckstri 98.4 1.6E-06 3.6E-11 81.4 11.2 99 12-117 2-112 (117)
66 PF11274 DUF3074: Protein of u 98.4 8.2E-06 1.8E-10 82.5 15.7 126 213-342 13-164 (184)
67 cd07819 SRPBCC_2 Ligand-bindin 98.4 1.2E-05 2.7E-10 75.0 14.8 134 206-363 4-139 (140)
68 cd05018 CoxG Carbon monoxide d 98.0 5.8E-05 1.3E-09 70.8 12.3 140 206-364 3-143 (144)
69 cd08861 OtcD1_ARO-CYC_like N-t 97.9 0.00029 6.2E-09 66.5 13.8 136 209-365 4-141 (142)
70 PF03364 Polyketide_cyc: Polyk 97.9 0.00031 6.8E-09 65.3 13.5 109 212-341 1-112 (130)
71 cd01234 PH_CADPS CADPS (Ca2+-d 97.8 4.8E-05 1E-09 69.4 5.9 92 11-115 3-109 (117)
72 PF15410 PH_9: Pleckstrin homo 97.7 0.00018 3.9E-09 67.6 9.8 99 12-116 2-118 (119)
73 KOG0690 Serine/threonine prote 97.6 8.1E-05 1.8E-09 80.3 5.7 99 9-117 14-117 (516)
74 cd07821 PYR_PYL_RCAR_like Pyra 97.6 0.0025 5.5E-08 59.0 15.2 138 205-364 2-139 (140)
75 cd07817 SRPBCC_8 Ligand-bindin 97.6 0.0029 6.3E-08 59.0 15.2 135 206-365 2-138 (139)
76 PF12814 Mcp5_PH: Meiotic cell 97.5 0.0014 3E-08 62.1 11.5 102 13-117 12-122 (123)
77 PRK10724 hypothetical protein; 97.4 0.0042 9.1E-08 61.4 15.2 137 203-364 14-151 (158)
78 cd08860 TcmN_ARO-CYC_like N-te 97.4 0.0068 1.5E-07 59.0 16.0 139 208-366 5-144 (146)
79 cd01259 PH_Apbb1ip Apbb1ip (Am 97.4 0.00043 9.3E-09 64.3 7.0 103 11-116 1-108 (114)
80 cd01243 PH_MRCK MRCK (myotonic 97.3 0.0021 4.6E-08 60.5 10.7 105 10-115 2-118 (122)
81 KOG2200 Tumour suppressor prot 97.3 5.1E-05 1.1E-09 86.5 -0.6 90 264-366 574-664 (674)
82 PF10604 Polyketide_cyc2: Poly 97.1 0.046 1E-06 50.5 17.6 133 206-364 4-138 (139)
83 cd01239 PH_PKD Protein kinase 97.1 0.0026 5.7E-08 59.4 8.6 95 12-115 2-117 (117)
84 cd01242 PH_ROK Rok (Rho- assoc 97.0 0.0089 1.9E-07 55.6 10.8 105 11-116 1-110 (112)
85 cd01224 PH_Collybistin Collybi 96.8 0.021 4.5E-07 53.3 12.0 98 12-114 4-105 (109)
86 KOG1090 Predicted dual-specifi 96.8 0.00072 1.6E-08 80.7 2.9 92 12-116 1636-1731(1732)
87 cd01218 PH_phafin2 Phafin2 Pl 96.7 0.017 3.7E-07 53.4 10.5 96 11-118 5-100 (104)
88 cd08865 SRPBCC_10 Ligand-bindi 96.7 0.051 1.1E-06 50.1 13.9 133 208-365 3-139 (140)
89 KOG3640 Actin binding protein 96.6 0.0037 8E-08 74.9 7.2 109 7-118 987-1108(1116)
90 PLN02866 phospholipase D 96.6 0.01 2.2E-07 72.9 11.0 99 12-118 184-309 (1068)
91 cd01261 PH_SOS Son of Sevenles 96.5 0.024 5.3E-07 53.1 10.2 97 11-117 5-110 (112)
92 cd07824 SRPBCC_6 Ligand-bindin 96.4 0.13 2.9E-06 49.2 15.6 108 206-336 3-113 (146)
93 PF15408 PH_7: Pleckstrin homo 96.4 0.0015 3.2E-08 57.8 1.7 94 13-114 1-95 (104)
94 cd07812 SRPBCC START/RHO_alpha 96.3 0.17 3.6E-06 45.2 14.7 114 207-339 2-115 (141)
95 PTZ00267 NIMA-related protein 96.3 0.0084 1.8E-07 68.7 7.5 100 7-116 374-476 (478)
96 cd07823 SRPBCC_5 Ligand-bindin 96.2 0.12 2.6E-06 49.5 13.9 140 207-364 2-144 (146)
97 KOG3751 Growth factor receptor 96.2 0.011 2.4E-07 67.3 7.4 105 6-116 313-424 (622)
98 cd01258 PH_syntrophin Syntroph 95.7 0.03 6.6E-07 52.1 6.6 101 13-114 2-107 (108)
99 cd01249 PH_oligophrenin Oligop 95.6 0.12 2.5E-06 48.0 10.2 93 12-113 1-102 (104)
100 PF14593 PH_3: PH domain; PDB: 95.3 0.12 2.6E-06 47.9 9.2 90 8-118 11-101 (104)
101 cd01221 PH_ephexin Ephexin Ple 95.2 0.14 2.9E-06 49.1 9.6 97 11-113 4-119 (125)
102 cd07818 SRPBCC_1 Ligand-bindin 95.2 0.72 1.6E-05 43.8 14.6 138 206-365 4-149 (150)
103 cd08862 SRPBCC_Smu440-like Lig 95.2 0.92 2E-05 42.0 15.0 40 206-246 3-42 (138)
104 cd07822 SRPBCC_4 Ligand-bindin 95.0 1.2 2.6E-05 41.0 15.4 106 206-331 2-108 (141)
105 PF06240 COXG: Carbon monoxide 94.9 0.9 2E-05 43.6 14.5 127 208-353 1-127 (140)
106 KOG2059 Ras GTPase-activating 94.5 0.048 1E-06 64.2 5.5 97 12-117 567-665 (800)
107 cd01222 PH_clg Clg (common-sit 93.1 0.87 1.9E-05 41.7 9.8 92 11-117 5-96 (97)
108 COG2867 Oligoketide cyclase/li 91.8 1.1 2.5E-05 43.8 9.3 110 205-340 3-117 (146)
109 cd07825 SRPBCC_7 Ligand-bindin 91.5 9.4 0.0002 35.7 15.3 30 206-236 2-31 (144)
110 PTZ00283 serine/threonine prot 91.4 0.41 8.9E-06 55.5 7.1 97 11-116 374-489 (496)
111 cd01223 PH_Vav Vav pleckstrin 89.9 2.2 4.7E-05 40.4 9.0 89 29-118 20-113 (116)
112 cd07814 SRPBCC_CalC_Aha1-like 89.7 9.7 0.00021 35.0 13.4 137 206-365 2-138 (139)
113 cd07820 SRPBCC_3 Ligand-bindin 89.7 8.5 0.00018 36.3 13.2 106 208-335 3-112 (137)
114 cd07816 Bet_v1-like Ligand-bin 89.3 18 0.00039 35.0 15.4 119 206-337 3-122 (148)
115 COG3427 Carbon monoxide dehydr 88.5 9.3 0.0002 37.7 12.6 138 206-364 3-143 (146)
116 cd01232 PH_TRIO Trio pleckstri 87.6 5.1 0.00011 37.8 9.9 91 22-117 21-113 (114)
117 KOG4424 Predicted Rho/Rac guan 87.0 1.5 3.2E-05 51.3 7.0 96 12-118 274-371 (623)
118 cd01225 PH_Cool_Pix Cool (clon 86.6 2.5 5.5E-05 39.6 7.1 78 27-115 26-108 (111)
119 KOG0521 Putative GTPase activa 86.5 0.52 1.1E-05 57.7 3.3 95 12-118 276-370 (785)
120 KOG1117 Rho- and Arf-GTPase ac 85.1 3.4 7.3E-05 50.3 8.8 97 12-115 494-600 (1186)
121 KOG0248 Cytoplasmic protein Ma 81.8 1.4 3.1E-05 52.1 4.1 92 12-117 251-342 (936)
122 KOG3845 MLN, STAR and related 81.0 0.35 7.7E-06 51.2 -1.1 138 176-321 27-164 (241)
123 COG5637 Predicted integral mem 80.0 41 0.00088 34.4 12.9 133 206-366 72-210 (217)
124 KOG1117 Rho- and Arf-GTPase ac 79.3 3.1 6.7E-05 50.6 5.7 94 12-115 1032-1130(1186)
125 KOG1451 Oligophrenin-1 and rel 78.2 4.8 0.0001 47.3 6.6 101 7-115 262-366 (812)
126 KOG1739 Serine/threonine prote 74.5 3 6.4E-05 47.9 3.7 92 12-118 20-118 (611)
127 cd08899 SRPBCC_CalC_Aha1-like_ 73.7 57 0.0012 31.7 12.1 32 203-235 10-41 (157)
128 cd01240 PH_beta-ARK Beta adren 73.2 4.7 0.0001 37.8 4.0 96 9-117 2-99 (116)
129 cd01248 PH_PLC Phospholipase C 72.1 18 0.00039 33.6 7.8 36 79-114 78-114 (115)
130 cd01262 PH_PDK1 3-Phosphoinosi 71.9 14 0.00031 33.5 6.7 80 12-115 3-87 (89)
131 KOG3723 PH domain protein Melt 71.8 1.7 3.7E-05 50.6 1.0 102 11-120 736-840 (851)
132 KOG3543 Ca2+-dependent activat 65.9 2.7 5.9E-05 49.3 1.1 94 12-117 466-566 (1218)
133 KOG3531 Rho guanine nucleotide 62.7 2.2 4.8E-05 51.7 -0.4 92 12-115 926-1018(1036)
134 PF15405 PH_5: Pleckstrin homo 62.0 13 0.00028 36.0 4.8 39 77-115 96-134 (135)
135 KOG3549 Syntrophins (type gamm 61.8 10 0.00023 42.0 4.5 108 6-117 277-387 (505)
136 KOG1738 Membrane-associated gu 61.6 2.2 4.8E-05 50.3 -0.6 38 11-48 563-600 (638)
137 TIGR01599 PYST-A Plasmodium yo 60.0 1.6E+02 0.0035 30.8 12.6 119 204-329 59-208 (208)
138 KOG4047 Docking protein 1 (p62 57.5 8.7 0.00019 44.0 3.2 105 6-117 4-118 (429)
139 cd01227 PH_Dbs Dbs (DBL's big 55.2 1.2E+02 0.0026 29.5 10.1 86 31-119 32-118 (133)
140 cd01226 PH_exo84 Exocyst compl 54.9 57 0.0012 30.3 7.5 93 11-116 3-98 (100)
141 PF11687 DUF3284: Domain of un 47.5 1.7E+02 0.0036 27.7 9.6 107 206-341 1-109 (120)
142 KOG1264 Phospholipase C [Lipid 43.5 28 0.00062 42.6 4.5 43 78-120 872-914 (1267)
143 cd08893 SRPBCC_CalC_Aha1-like_ 42.3 2.7E+02 0.0058 25.3 10.6 30 206-236 2-31 (136)
144 cd01228 PH_BCR-related BCR (br 41.7 28 0.0006 32.0 3.2 82 10-115 3-93 (96)
145 KOG1737 Oxysterol-binding prot 38.6 18 0.00038 44.6 1.9 36 11-49 78-113 (799)
146 KOG0932 Guanine nucleotide exc 37.6 39 0.00084 40.0 4.3 104 12-123 508-626 (774)
147 PF14784 ECIST_Cterm: C-termin 30.6 94 0.002 30.0 5.1 18 97-114 94-111 (126)
148 COG3832 Uncharacterized conser 30.6 4.8E+02 0.01 25.3 10.2 32 203-235 7-38 (149)
149 cd08896 SRPBCC_CalC_Aha1-like_ 29.3 4.9E+02 0.011 24.5 14.2 28 206-234 2-29 (146)
150 PHA02770 hypothetical protein; 28.7 1.6E+02 0.0034 25.2 5.4 46 33-98 25-70 (81)
151 cd08898 SRPBCC_CalC_Aha1-like_ 28.1 52 0.0011 30.6 2.9 31 206-237 3-33 (145)
152 cd01231 PH_Lnk LNK-family Plec 27.3 1.2E+02 0.0025 28.5 4.8 32 79-114 75-106 (107)
153 cd08895 SRPBCC_CalC_Aha1-like_ 27.0 5.4E+02 0.012 24.3 16.4 28 207-235 3-30 (146)
154 PF15406 PH_6: Pleckstrin homo 25.7 1.9E+02 0.0041 27.4 5.9 53 48-113 57-110 (112)
155 PF08327 AHSA1: Activator of H 25.1 4.9E+02 0.011 23.2 13.8 20 213-233 1-20 (124)
156 KOG0976 Rho/Rac1-interacting s 20.1 45 0.00098 40.9 0.9 105 10-117 812-920 (1265)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=2.3e-178 Score=1503.42 Aligned_cols=678 Identities=34% Similarity=0.615 Sum_probs=606.0
Q ss_pred CCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEe
Q 004508 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (748)
Q Consensus 8 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~ 87 (748)
+.+.||||||++|+||||++|||+|||||+||+|+|||++|.+| ++|||+++|||||||||+|||+|||+++|||+|||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 46779999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cCCCCceEEEecCCHHHHHHHHHHHHHHHHhCCCCCCCC------------------cccCCCC-----------CCCcc
Q 004508 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALKGGPHQGVG------------------DHIGCPN-----------SPWES 138 (748)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~~~~~~~~~------------------~~~~~~~-----------~~~~~ 138 (748)
+++|+++++|||.|+|||++||+||++|++|+...+... ++.+++. .+.++
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 999999999999999999999999999999753221110 0112221 25577
Q ss_pred cccccCCCCCCCccccCcccccc--ccccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcH
Q 004508 139 FRLSGSSRASHTKSIDWTLCSGT--HMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTS 216 (748)
Q Consensus 139 ~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~dv~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~asp 216 (748)
+|..+||+||+.+..+||...+. .|+++.+|+++.+.|++++|+|||+||++..+.+++++ +..++|||+|+|+|+|
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~-~~~~~mKavGVV~asp 239 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR-SCSRAMKAVGVVEATC 239 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc-cCCceeEEEEEecCCH
Confidence 78889999999999999875554 37899999999999999999999999999988887776 3469999999999999
Q ss_pred HHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCC
Q 004508 217 EAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKK 296 (748)
Q Consensus 217 e~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~ 296 (748)
++||++||++++.|.+||.++.++++||+||+||+|+|.++++.|+|+.+++||||++|||++.+||+|+|+++|++||+
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 99999999998889999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeceEEEEEeCC---CCCeeEEEEEEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 004508 297 CPRQKGSVRACLKSGGYVITPMN---HGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRAKQGNYSS 373 (748)
Q Consensus 297 ~Pp~~G~VRa~i~~gGwvI~Pl~---~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~~~~~~~~~ 373 (748)
|||++|||||++++|||+|.|+. +.++|+|+|++|+|+|||+|+|+++++++++++||++||+|||||+++++.++
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999983 33699999999999999999999999999999999999999999999998776
Q ss_pred CccccccccccccccccCCCcccCCCcCCCCCC--CCccccccccccccccccCCcccccccCCCCCCCCCCCCCCCCCC
Q 004508 374 PEFLSGELTRNMRMHQTDGNMVQMPTEDGNSKK--NTSEEVDQVSSEHASLVGLNDAADEFFDVPEPSDYDDSENGWTSD 451 (748)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 451 (748)
.+|++++.+++.+. ..+++++... ..+.+.....+.+++++++++++|||||+||++++....
T Consensus 399 -------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~------ 463 (719)
T PLN00188 399 -------PPRIPVMVNMASAS--VSSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETT------ 463 (719)
T ss_pred -------cccceeeccccccc--ccccccccccccccccccccccchhhhhhccccccchhccCCCcccccccc------
Confidence 78888888876432 2222222221 223333445567888999999999999999987621100
Q ss_pred CCCCCCCcCCCCccccccccchhhhhhHHhhhcCcccccCCcccCCCc-cccCcceecCCCCCCCCccccCCCCceEEcc
Q 004508 452 FGPEMNSQDTRHPKISTAAGFVRKLHDLAVQKRGYVDLQGTAKEDNFS-CCYGTTLQKDPTCTLPCSWTSTDPSTFLIRG 530 (748)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~Ws~~~~~~F~VRg 530 (748)
+ +.+..+. ..+.+.+.|| ++|+|+|++++.+++.+||++|++++|+|||
T Consensus 464 -------------k-~~~~~~~----------------~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG 513 (719)
T PLN00188 464 -------------K-NETKDTA----------------MEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRS 513 (719)
T ss_pred -------------c-ccccccc----------------cccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcC
Confidence 0 0000000 2334566788 9999999999999999999999999999999
Q ss_pred ccccccCcccccCCCceeEEEEEeeecCCcccccCCCCCCchhhhhhhcCCceEEEEEEEecCCCCeeEEEEEeecCCCC
Q 004508 531 KNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPGSTTYSLALYYMMTTPVK 610 (748)
Q Consensus 531 ~~Y~~dk~K~~a~~~l~~lv~vD~f~s~~~~~~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~~p~~slV~Yf~~~~~~~ 610 (748)
+|||+||+|+||+++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++++ +.
T Consensus 514 ~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k--~~F~fiVNlQvPg~~~ys~V~Yf~~~~-l~ 590 (719)
T PLN00188 514 KNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK--GLFSFVVNLQVPGSTHYSMVFYFVTKE-LV 590 (719)
T ss_pred CCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc--CCcEEEEEEEccCCCceEEEEEEeccC-CC
Confidence 999999999999999999999999999999999999999999987665 489999999999999999999999865 77
Q ss_pred CchhHHHHhcCCccccccceeecccccccceeEeeecCCccEEeeeeeEEEEEecCCEEEEEEEecchHHHHHHHHHhhc
Q 004508 611 DAPLLESFINGDDAYRNSRFKLIPYISEGSWIVKQSVGKKACLIGQALEINYFHGKNYLELGVDIGSSTVARGVVSLVLG 690 (748)
Q Consensus 611 ~~~Ll~rf~~gdd~fRn~RfKlIp~v~~gpwivk~avg~kp~l~gk~~~~~y~~g~~ylEiDvDi~sS~vAr~~~~l~~g 690 (748)
+++||+||++|||+|||+||||||+|++||||||++||+|||||||+++|+||+|+||||||||||||+||++|++||+|
T Consensus 591 ~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g 670 (719)
T PLN00188 591 PGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIG 670 (719)
T ss_pred CchHHHHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEEeecCCccccccceeceEeecccCcccccccCCCC
Q 004508 691 YLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLDAAKAVLLKPSS 736 (748)
Q Consensus 691 ~~~~lvvd~gf~Ieg~~~eELPE~lLG~~Rl~~~d~~~a~~~~~~~ 736 (748)
|+++|||||||+|||+++|||||+|||||||++||+++|+.+++..
T Consensus 671 ~~~~lvvD~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~~~~ 716 (719)
T PLN00188 671 VITTLVVDMAFLVQANTYEELPERLIGAVRVSHVELSSAIVPKLDP 716 (719)
T ss_pred hhhheEEEEEEEEecCChhhCchhheeeEEecccchhhccccCCCC
Confidence 9999999999999999999999999999999999999999887654
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=7.1e-74 Score=588.57 Aligned_cols=207 Identities=54% Similarity=0.929 Sum_probs=202.0
Q ss_pred cccCCCCceEEccccccccCcccccCCCceeEEEEEeeecCCcccccCCCCCCchhhhhhhcCCceEEEEEEEecC----
Q 004508 518 WTSTDPSTFLIRGKNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPG---- 593 (748)
Q Consensus 518 Ws~~~~~~F~VRg~~Y~~dk~K~~a~~~l~~lv~vD~f~s~~~~~~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~---- 593 (748)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|++++++....+ +.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-GVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-CCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999888766 57999999999999
Q ss_pred ------CCCeeEEEEEeecCCCCC------chhHHHHhcCC---ccccccceeecccccccceeEeeec-CCccEEeeee
Q 004508 594 ------STTYSLALYYMMTTPVKD------APLLESFINGD---DAYRNSRFKLIPYISEGSWIVKQSV-GKKACLIGQA 657 (748)
Q Consensus 594 ------~p~~slV~Yf~~~~~~~~------~~Ll~rf~~gd---d~fRn~RfKlIp~v~~gpwivk~av-g~kp~l~gk~ 657 (748)
+|+||+|+||++++++.+ .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~ 159 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKK 159 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCc
Confidence 999999999999998876 78999999999 9999999999999999999999999 9999999999
Q ss_pred eEEEEEecCCEEEEEEEecchHHHHHHHHHhhcccceEEEEEEEEeecCCccccccceeceEeecccC
Q 004508 658 LEINYFHGKNYLELGVDIGSSTVARGVVSLVLGYLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLD 725 (748)
Q Consensus 658 ~~~~y~~g~~ylEiDvDi~sS~vAr~~~~l~~g~~~~lvvd~gf~Ieg~~~eELPE~lLG~~Rl~~~d 725 (748)
++|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 160 ~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 160 LQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred cceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.3e-33 Score=286.91 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=163.2
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEE
Q 004508 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDI 252 (748)
Q Consensus 173 ~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdI 252 (748)
.++|++....+|+.||.+.... ..++.+|++|+|+++|++|++++.+.+ .|.+||+++.++++||+||++|+|
T Consensus 21 ~~gWk~~k~~~~~~v~~k~~~~------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T~I 93 (204)
T cd08904 21 TSGWKVVKTSKKITVSWKPSRK------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDTFI 93 (204)
T ss_pred ccCCeEEecCCceEEEEEEcCC------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCcEE
Confidence 5899999999999999986432 346999999999999999999999876 799999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEEEEe
Q 004508 253 IHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHMLA 331 (748)
Q Consensus 253 vY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-g~~~~VTyi~~ 331 (748)
+|.++++. ....+++||||.+|+|++.++|.|+++..|++||+|||++|||||+++++||+|+|+++ +++|.++|+++
T Consensus 94 ~~~~~~~~-~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~ 172 (204)
T cd08904 94 CHTITQSF-AMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQ 172 (204)
T ss_pred EEEecccc-cCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEE
Confidence 99998652 22349999999999999877788999999999999999999999999999999999954 45799999999
Q ss_pred eeCCCCccCccccchhHHHHHHHHHHHHHHHHH
Q 004508 332 IDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (748)
Q Consensus 332 vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~ 364 (748)
+|||||+|+| ..++.++..|++.+..|++-+
T Consensus 173 ~DlkG~lP~~--vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 173 PELRGNLSRS--VIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred eCCCCCCCHH--HHHHHhHHHHHHHHHHHHHhc
Confidence 9999999997 466789999999999998753
No 4
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=4.8e-33 Score=282.97 Aligned_cols=186 Identities=19% Similarity=0.286 Sum_probs=161.8
Q ss_pred cccCCCCCEEEEeeC-CeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHH-hCCCCccccccccceeEEEEee
Q 004508 169 DVIAPSPWTIFGCQN-GLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLM-SLGASRSVWDFCFYRGCVVEHL 246 (748)
Q Consensus 169 dv~a~~~Wklv~~~n-GIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~-d~d~~R~eWD~~~~e~~VVE~i 246 (748)
+++...+|++..+++ |++||++..++ ..+.+|+++++++++++||+.|+ |.+ .|++||+.+.++++|+++
T Consensus 19 ~~~~~~~W~l~~~~~~~i~i~~r~~~~-------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~ 90 (208)
T cd08868 19 SILTDPGWKLEKNTTWGDVVYSRNVPG-------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVI 90 (208)
T ss_pred HHhcCCCceEEEecCCCCEEEEEEcCC-------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEe
Confidence 345566999999997 99999998763 34899999999999999997554 777 799999999999999999
Q ss_pred cCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeE
Q 004508 247 DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSV 325 (748)
Q Consensus 247 d~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-g~~~~ 325 (748)
|++++|+|+.+++. +||++++||||++|+|++. +|.|+|+..|++||++|+++|||||....|||+|+|+++ ..+|.
T Consensus 91 d~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~ 168 (208)
T cd08868 91 DDNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCN 168 (208)
T ss_pred cCCcEEEEEEecCc-CCCcccccceEEEEEEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceE
Confidence 99999999988663 5689999999999999985 578999999999999999999999999999999999964 35899
Q ss_pred EEEEEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHHh
Q 004508 326 VKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 326 VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
|+|++++|||||+|.|+ .+..+...+++.+++||++++.
T Consensus 169 v~~~~~~Dp~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 169 FTWLLNTDLKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEECCCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999994 3334445566779999999864
No 5
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=3.4e-32 Score=275.20 Aligned_cols=177 Identities=25% Similarity=0.354 Sum_probs=154.5
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEE
Q 004508 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDI 252 (748)
Q Consensus 173 ~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdI 252 (748)
..+|++..+++||+||.+..+. ++.+++||++++|+++|++|++.|++ .|.+||+.+.++++|++++++++|
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~-----~~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~i 89 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDD-----GHPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTEV 89 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCC-----CCcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcEE
Confidence 6799999999999999997743 14689999999999999999999985 589999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 004508 253 IHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 330 (748)
Q Consensus 253 vY~~~~~~~lP~pvs~RDfV~lR~wrr~-~dGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~ 330 (748)
+|+.++ .|||+++||||++|+|++. ++|+|+|..+|+.|| .+|+ |||||....|||+|+|++++ +|+|||++
T Consensus 90 ~y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~~ 163 (197)
T cd08869 90 YQYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHIC 163 (197)
T ss_pred EEEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEEE
Confidence 999983 4889999999999999874 678899999999995 6676 99999999999999999755 89999999
Q ss_pred eeeCCCCccCccccchhHHHHHHHHHHHHHHHHHHh
Q 004508 331 AIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 331 ~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
++|||||+|.|+++.-.++.... |.+||+.|.+
T Consensus 164 ~~Dp~G~iP~wl~N~~~~~~~~~---~~~l~~~~~~ 196 (197)
T cd08869 164 RVDLRGRSPEWYNKVYGHLCARE---LLRIRDSFRQ 196 (197)
T ss_pred EECCCCCCCceeecchHhHHHHH---HHHHHhhccC
Confidence 99999999999644333343343 8899998864
No 6
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=6.2e-32 Score=275.83 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=159.1
Q ss_pred cccCCCCCEEEEee-CCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEee
Q 004508 169 DVIAPSPWTIFGCQ-NGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHL 246 (748)
Q Consensus 169 dv~a~~~Wklv~~~-nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf-evL~d~d~~R~eWD~~~~e~~VVE~i 246 (748)
-+.+.++|++.... +|++||++..++ +. ++||+++++++|++.|| ++|.|++ .|.+||+++.++++|+++
T Consensus 20 ~l~~~~~W~l~~~~~~gi~V~s~~~~~------~~-~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~ 91 (209)
T cd08906 20 ILAQEENWKFEKNNDNGDTVYTLEVPF------HG-KTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRV 91 (209)
T ss_pred HhhcccCCEEEEecCCCCEEEEeccCC------CC-cEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeec
Confidence 34457799998765 999999986653 33 89999999999999997 6889998 799999999999999999
Q ss_pred cCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC-CCCCeeE
Q 004508 247 DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM-NHGKKSV 325 (748)
Q Consensus 247 d~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl-~~g~~~~ 325 (748)
+++++|+|....| |++||+++||||++|+|.+..++ |+++..|+.|+.+|+++|||||+++.+||.|.|. .++.+|+
T Consensus 92 ~~~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~ 169 (209)
T cd08906 92 DDNTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCT 169 (209)
T ss_pred cCCcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceE
Confidence 9999999954433 56669999999999999986555 8999999999999999999999999999999997 4445899
Q ss_pred EEEEEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHHh
Q 004508 326 VKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 326 VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
|||++++|||||+|.|+ .++.++-.+++++.+||++++.
T Consensus 170 vt~~~~~Dp~G~lP~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 170 FIWILNTDLKGRLPRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEEecCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999993 3344555566779999998864
No 7
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.98 E-value=2.8e-31 Score=270.77 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=157.0
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeecCce
Q 004508 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHT 250 (748)
Q Consensus 172 a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~-~R~eWD~~~~e~~VVE~id~~t 250 (748)
.+++|++..++||++||++.... ..+..||++|++++++++|+++|+|.+. .|.+||.++.++++||++|+++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~ 93 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE------FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDV 93 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC------CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCE
Confidence 46789999999999999985421 2346799999999999999999997653 6799999999999999999999
Q ss_pred EEEEEEEccCCCC-CCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEE
Q 004508 251 DIIHKQLYSDWLP-WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKH 328 (748)
Q Consensus 251 dIvY~~~~~~~lP-~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~~~VTy 328 (748)
.|+|..+ + |.+ +++++||||++|+|++.+||+|++...|+.||.||+++|||||+..++||++.|+. +.++|.|+|
T Consensus 94 ~i~~~~~-p-~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~ 171 (208)
T cd08903 94 SVCRTVT-P-SAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVS 171 (208)
T ss_pred EEEEEec-c-hhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEE
Confidence 9988844 1 211 23999999999999999999999999999999999999999999999999999994 345899999
Q ss_pred EEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHH
Q 004508 329 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 329 i~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
++++|||||+|.|+ .+..++..+..++.+||+.+.
T Consensus 172 ~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 172 FFQTDLSGYLPQTV--VDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EEEeccCCCcCHHH--HHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999983 334455566677999999875
No 8
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=2.7e-31 Score=269.49 Aligned_cols=173 Identities=24% Similarity=0.352 Sum_probs=148.7
Q ss_pred CCEEEEeeCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004508 175 PWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (748)
Q Consensus 175 ~Wklv~~~nGIrVy~r-~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIv 253 (748)
+|......|++.++-+ ..++ +.++++|+++.|+++|++|+..+.+ .|++||.++.++++||++|+|++|+
T Consensus 28 ~w~~~~~~~~~e~~ykK~~d~------~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi~ 98 (205)
T cd08909 28 GWISCSSSDNTELAYKKVGDG------NPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEVY 98 (205)
T ss_pred CCcccCCcCCeEEEEecCCCC------CceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEEE
Confidence 5555555555555433 3332 6789999999999999999998875 5999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 004508 254 HKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 332 (748)
Q Consensus 254 Y~~~~~~~lP~pvs~RDfV~lR~wrr~-~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~v 332 (748)
|+.++. |+|+++||||++|+|+++ ++|+|+|+++|++|+++|+. |+|||....+||+|+|++++ +|+|||++++
T Consensus 99 ~y~~~~---~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~~v 173 (205)
T cd08909 99 QYVLNC---MAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHICRV 173 (205)
T ss_pred EEEeec---CCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEEEe
Confidence 999953 568999999999999987 68999999999999999995 99999999999999999876 7999999999
Q ss_pred eCCCCccCccc-cchhHHHHHHHHHHHHHHHHHH
Q 004508 333 DWKCWRSYLQP-SSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 333 DpkGwiP~~~~-~~~~~i~~~mL~~va~LRe~~~ 365 (748)
|||||+|.|++ .++..++.. +++||+.|.
T Consensus 174 DpkG~~P~W~~n~~g~~~~~~----~~~~r~sf~ 203 (205)
T cd08909 174 DLKGHSPEWYNKGFGHLCAAE----AARIRNSFQ 203 (205)
T ss_pred cCCCCChHHHHHhHHHHHHHH----HHHHHhhcc
Confidence 99999999964 566666555 889999875
No 9
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=4e-31 Score=268.91 Aligned_cols=188 Identities=12% Similarity=0.157 Sum_probs=165.3
Q ss_pred ccccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeE
Q 004508 162 HMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGC 241 (748)
Q Consensus 162 ~~~~~~~dv~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~ 241 (748)
.|..++....+.++|++..+++||+||++..+ +....||++++|++|+++|+++|.|.+ .|++||..+.+++
T Consensus 10 ~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~-------~~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~~ 81 (205)
T cd08874 10 VNLSNLDQCQATAGWSYQCLEKDVVIYYKVFN-------GTYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTAR 81 (205)
T ss_pred hhHHHHHhhhccCCcEEEecCCCEEEEEecCC-------CCcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhhee
Confidence 46778888899999999999999999999755 246889999999999999999999999 7999999999999
Q ss_pred EEEeecCceEEEEEEEccCCCCCCC--CCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCC-CeEEEEEeceEEEEEeC
Q 004508 242 VVEHLDGHTDIIHKQLYSDWLPWGM--KRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQK-GSVRACLKSGGYVITPM 318 (748)
Q Consensus 242 VVE~id~~tdIvY~~~~~~~lP~pv--s~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~-G~VRa~i~~gGwvI~Pl 318 (748)
+|+++++++.|+|+++. .|||+ ++||||+++.|+. +++.++|..+|+.||.+|+.+ |||||..+.|||+|+|+
T Consensus 82 vl~~~~~d~~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~-~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~ 157 (205)
T cd08874 82 IHKTFTEDICLVYLVHE---TPLCLLKQPRDFCCLQVEAK-EGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPV 157 (205)
T ss_pred eeeecCCCeEEEEEEec---CCCCCCCCCCeEEEEEEEEE-CCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEEC
Confidence 99999999999999983 46666 9999999999887 455667999999999999996 99999999999999999
Q ss_pred ---CCCCeeEEEEEEeeeCC-CCccCcc-ccchhHHHHHHHHHHHHHHHHHHh
Q 004508 319 ---NHGKKSVVKHMLAIDWK-CWRSYLQ-PSSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 319 ---~~g~~~~VTyi~~vDpk-GwiP~~~-~~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
+++ +|+|||++|+||| |-+|.|+ |.+....|. .+|.|+.|+.+
T Consensus 158 ~~~g~~-~t~vty~~q~DPggg~iP~~l~N~~~~~~p~----~~~~~~~~~~~ 205 (205)
T cd08874 158 TVEGNQ-YTRVIYIAQVALCGPDVPAQLLSSLSKRQPL----VIARLALFLEA 205 (205)
T ss_pred ccCCCC-cEEEEEEEEECCCCCCCCHHHHhHHHHhccH----HHHHHHHHhhC
Confidence 544 8999999999999 7999994 555555554 48999998753
No 10
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=8.2e-31 Score=266.25 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=156.9
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHh--CCCCccccccccceeEEEEeecCce
Q 004508 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS--LGASRSVWDFCFYRGCVVEHLDGHT 250 (748)
Q Consensus 173 ~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d--~d~~R~eWD~~~~e~~VVE~id~~t 250 (748)
..+|++..+++|++||++.... ...+.+|+++++++++++|+++|.+ .+ .|.+||..+.++++|+++++++
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~~ 93 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPSTE------FTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISEDL 93 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCCC------CCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCCe
Confidence 3789999999999999985321 2347899999999999999999998 55 7999999999999999999999
Q ss_pred EEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEE
Q 004508 251 DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHM 329 (748)
Q Consensus 251 dIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~~~VTyi 329 (748)
+|+|+.+.. ...+++++||||++++|++.++|.|+++..|++||.+|+.+|||||+...|||+|+|+. +.++|.+||+
T Consensus 94 ~i~~~~~p~-~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~ 172 (206)
T cd08867 94 CVGRTITPS-AAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLY 172 (206)
T ss_pred EEEEEEccc-cccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEE
Confidence 999986521 11245999999999999998888999999999999999999999999999999999985 3457999999
Q ss_pred EeeeCCCCccCccccchhHHHHHHHHHHHHHHHHH
Q 004508 330 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (748)
Q Consensus 330 ~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~ 364 (748)
+++|||||+|.|+ .+..++..++..+..||+++
T Consensus 173 ~~~DpkG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 173 VQTDLRGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEeccCCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 9999999999983 33455566777899999875
No 11
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=9e-31 Score=268.86 Aligned_cols=181 Identities=22% Similarity=0.307 Sum_probs=158.4
Q ss_pred cCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecCc
Q 004508 171 IAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (748)
Q Consensus 171 ~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~ 249 (748)
....+|+++.+++||+||++..++ +.++.+|+++++ +++++.++++|+|.+ .|++||+++.++++|++++++
T Consensus 20 ~~~~~W~~~~~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 20 DSTDGWKLKYNKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred cCCCCcEEEEcCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCC
Confidence 345689999999999999997764 567899999987 799999999999988 899999999999999999999
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004508 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 329 (748)
Q Consensus 250 tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi 329 (748)
++|+|+.+ .+|||+++||||++|.|+..+ |.|+|+..|+.|+.+|+++|+|||....+||+|+|++.+ +|.|||+
T Consensus 93 ~~i~y~~~---~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~~ 167 (222)
T cd08871 93 NDIGYYSA---KCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTYV 167 (222)
T ss_pred CEEEEEEe---ECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEEE
Confidence 99999998 568999999999999999754 889999999999999999999999999999999999754 7999999
Q ss_pred EeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHHh
Q 004508 330 LAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 330 ~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
+++|||||||.|+ |.+....+..+ +.+||+.+.+
T Consensus 168 ~~~Dp~G~IP~~lvN~~~~~~~~~~---l~~l~k~~~~ 202 (222)
T cd08871 168 TQNDPKGSLPKWVVNKATTKLAPKV---MKKLHKAALK 202 (222)
T ss_pred EecCCCCCcCHHHHHHHHHHHhHHH---HHHHHHHHHH
Confidence 9999999999994 66655555554 4455544443
No 12
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=6.3e-31 Score=270.97 Aligned_cols=182 Identities=17% Similarity=0.285 Sum_probs=164.9
Q ss_pred CCCccccCccccccc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHH
Q 004508 148 SHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTL 223 (748)
Q Consensus 148 ~~~~~~d~~~~~~~~----~~~~~~dv~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL 223 (748)
-..+++.|+..|+.+ |..++....+..+|++..+++||+||++. + ++...||+++++++|+++++++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~-------s~~l~fk~e~~vdvs~~~l~~LL 97 (236)
T cd08914 26 EVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E-------HDVLSVWVEKHVKRPAHLAYRLL 97 (236)
T ss_pred cCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C-------CCcEEEEEEEEEcCCHHHHHHHH
Confidence 455779999999965 68899999999999999999999999995 3 56789999999999999999999
Q ss_pred HhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCC-CCCCceEEEEEEEEEcC-CCc-EEEEEEecCCCCCCCC
Q 004508 224 MSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRRED-DGT-YVILYHSVFHKKCPRQ 300 (748)
Q Consensus 224 ~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~-pvs~RDfV~lR~wrr~~-dGs-yvI~~~SV~hp~~Pp~ 300 (748)
.|++ .|++||.++.++++|+++|++.+ +|+.. ..|| |+++||||+++.+++.. +|. |+|..+|+.||.+|+.
T Consensus 98 ~D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~---~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~ 172 (236)
T cd08914 98 SDFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHIT---CPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPS 172 (236)
T ss_pred hChh-hhchhHHhhceEEEEEEeCCCcC-EEEEe---cCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCC
Confidence 9999 89999999999999999999988 67766 3588 89999999999988765 786 9999999999999999
Q ss_pred CCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCcccc
Q 004508 301 KGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPS 344 (748)
Q Consensus 301 ~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~ 344 (748)
+||||+.....||+|+|++++ +|.|||++|+|| ||+|.|..+
T Consensus 173 kg~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~~~n 214 (236)
T cd08914 173 PQYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYFAGN 214 (236)
T ss_pred CCcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchheEEe
Confidence 999999999999999999765 799999999999 999999533
No 13
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.97 E-value=2.9e-30 Score=266.54 Aligned_cols=179 Identities=18% Similarity=0.185 Sum_probs=161.7
Q ss_pred CCCCCCccccCccccccc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH
Q 004508 145 SRASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF 220 (748)
Q Consensus 145 ~~~~~~~~~d~~~~~~~~----~~~~~~dv~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf 220 (748)
.+.-..+|+.|+..|+.+ |..++..+.+.++|++..+++||+||++. + ++...||+++++++++++|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~-~-------s~~l~fk~e~~vd~s~~~v~ 93 (235)
T cd08873 22 LQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLE-Q-------DGVLSFCVELKVQTCASDAF 93 (235)
T ss_pred cCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEec-C-------CCceEEEEEEEecCCHHHHH
Confidence 444567889999999965 68899999999999999999999999997 2 45789999999999999999
Q ss_pred HHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc-CC-CcEEEEEEecCCCCCC
Q 004508 221 QTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DD-GTYVILYHSVFHKKCP 298 (748)
Q Consensus 221 evL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~-~d-GsyvI~~~SV~hp~~P 298 (748)
++|.|.+ .|.+||.++.++++|++++++..|+|+++ ..|||+++||||++++|++. ++ +.|+|..+|+.|+.+|
T Consensus 94 dlL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~---p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~P 169 (235)
T cd08873 94 DLLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTM---PSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVP 169 (235)
T ss_pred HHHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEc---CCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCC
Confidence 9999999 89999999999999999999888888876 45889999999999999984 33 3599999999999999
Q ss_pred CCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004508 299 RQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 336 (748)
Q Consensus 299 p~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkG 336 (748)
|++||||++...|||+|+|++++ .|.|||++|+|||=
T Consensus 170 p~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 170 QTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred CCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 99999999999999999999765 79999999999874
No 14
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=8.3e-30 Score=256.83 Aligned_cols=182 Identities=25% Similarity=0.308 Sum_probs=157.9
Q ss_pred cCCCCCEEEEe-eCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHH-HHHHHHhCCCCccccccccceeEEEEeecC
Q 004508 171 IAPSPWTIFGC-QNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEA-IFQTLMSLGASRSVWDFCFYRGCVVEHLDG 248 (748)
Q Consensus 171 ~a~~~Wklv~~-~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~-VfevL~d~d~~R~eWD~~~~e~~VVE~id~ 248 (748)
.+..+|++... ++|+.+|++..++ ++.+..+|++++|++++++ +.+++.|++ .|++||+++.++++|+++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 16 ASEPGWVLSSENENGDEVRSILSPG-----RSPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred CCCCccEEccccCCcceEEEEccCC-----CCceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECC
Confidence 34578999997 8999999987653 1467999999999999997 556777877 89999999999999999999
Q ss_pred ceEEEEEEEccCCCCC-CCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 004508 249 HTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVK 327 (748)
Q Consensus 249 ~tdIvY~~~~~~~lP~-pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VT 327 (748)
+++|+|+.+ .+|| |+++||||++|+|+..++|.|+|+.+|+.|+++|+.+|+|||++..|||+|+|++++ .|+||
T Consensus 90 ~~~i~~~~~---~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~vt 165 (206)
T smart00234 90 GTVIYHYVS---KFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSKVT 165 (206)
T ss_pred CCeEEEEEE---ecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeEEE
Confidence 999999988 4577 999999999999999888999999999999999999999999999999999999876 69999
Q ss_pred EEEeeeCCCCccCc-cccchhHHHHHHHHHHHHHHHHHH
Q 004508 328 HMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 328 yi~~vDpkGwiP~~-~~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
|+.++|||||+|.| .+.+.+..+..+ +..||+.+.
T Consensus 166 ~~~~~D~~G~iP~~lvn~~~~~~~~~~---~~~~~~~~~ 201 (206)
T smart00234 166 WVSHADLKGWLPHWLVRSLIKSGLAEF---AKTWVATLQ 201 (206)
T ss_pred EEEEEecCCCccceeehhhhhhhHHHH---HHHHHHHHH
Confidence 99999999999999 466666666655 445555544
No 15
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=3.7e-30 Score=267.05 Aligned_cols=181 Identities=19% Similarity=0.255 Sum_probs=152.4
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCc--eEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEeecCc
Q 004508 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHP--AIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (748)
Q Consensus 173 ~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~--~~KavgvV~-aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~ 249 (748)
..+|+++.+++||+||++..++ +... .+||+++|+ +++++++++|+|.+ +|.+||.++.++++|++++++
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~------sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~~~ 97 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEE------DGVVLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLSQD 97 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCC------CCceeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecCCC
Confidence 3489999999999999998774 3334 799999998 99999999999999 899999999999999999999
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEcCC-------CcEEEEEEecCCCCCCCCCCeEEEEEec------------
Q 004508 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD-------GTYVILYHSVFHKKCPRQKGSVRACLKS------------ 310 (748)
Q Consensus 250 tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~d-------GsyvI~~~SV~hp~~Pp~~G~VRa~i~~------------ 310 (748)
++|+|+.+ .+|||+++||||++++|++.++ +.|++++.|+.||++|+++||||+....
T Consensus 98 ~~I~Y~~~---k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~ 174 (235)
T cd08872 98 TLIFHQTH---KRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPD 174 (235)
T ss_pred CEEEEEEc---cCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCC
Confidence 99999988 5799999999999999998654 5699999999999999999999999743
Q ss_pred eEEEEEeCCCCCeeEEEEEEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHHhcc
Q 004508 311 GGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFRAKQ 368 (748)
Q Consensus 311 gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~~~~ 368 (748)
|+|.++| +++ +|+|||++++|||||+|.|+ +...+... ...|..|-.|+..+-
T Consensus 175 g~~~~t~-~~~-~~~ity~~~~dPgG~iP~wvvn~~~k~~~---P~~l~~~~~~~~~~~ 228 (235)
T cd08872 175 GNQEITR-DNI-LCKITYVANVNPGGWAPASVLRAVYKREY---PKFLKRFTSYVQEKT 228 (235)
T ss_pred CcccccC-CCC-eEEEEEEEEeCCCCCccHHHHHHHHHhhc---hHHHHHHHHHHHHhc
Confidence 3344555 334 89999999999999999993 44333332 344788888887653
No 16
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.97 E-value=3.6e-30 Score=262.78 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=154.5
Q ss_pred CCCCCEEEE-eeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeecCc
Q 004508 172 APSPWTIFG-CQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (748)
Q Consensus 172 a~~~Wklv~-~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf-evL~d~d~~R~eWD~~~~e~~VVE~id~~ 249 (748)
..++|++.. .++|++||.+..++ +. ++||+++++++++++|+ .++.|++ .+++|++++.++++|+++|++
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~------~~-k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~ 94 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD------IG-KVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKD 94 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC------CC-cEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCC
Confidence 456899995 68999999987764 33 99999999999999999 5555777 799999999999999999999
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEE
Q 004508 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKH 328 (748)
Q Consensus 250 tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-g~~~~VTy 328 (748)
++|+|+...+ |..|++++||||++|+|++. ++.++++..|+.|+.+|+++|||||+...|||+|+|+++ +.+|.|||
T Consensus 95 ~~i~y~~~~p-~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~ 172 (209)
T cd08905 95 TLITHEVAAE-TAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTW 172 (209)
T ss_pred ceEEEEEecc-CCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEE
Confidence 9999985422 22234999999999999985 556778889999999999999999999999999999964 34899999
Q ss_pred EEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHHh
Q 004508 329 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 329 i~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
++++|||||+|.|+ .+..++..+++.+.+||+.+..
T Consensus 173 ~~~~DpkG~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 173 LLSIDLKGWLPKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEeecCCCCCCHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999993 2334445566679999998863
No 17
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.97 E-value=6e-30 Score=260.73 Aligned_cols=180 Identities=18% Similarity=0.138 Sum_probs=156.7
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecC-c
Q 004508 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG-H 249 (748)
Q Consensus 172 a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~-~ 249 (748)
..++|+++.+++||+||++..++ +.+..||+++++ ++|+++++++++|.+ .|.+||.++.++++|++.++ +
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~ 91 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG------TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETG 91 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCC
Confidence 45679999999999999998774 567899999977 999999999999998 89999999999999998755 8
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC--CCCeeEE
Q 004508 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN--HGKKSVV 326 (748)
Q Consensus 250 tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~-~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~--~g~~~~V 326 (748)
++|+|+.+ .+|||+++||||+.|.|..+ ++|.|+|+.+|+.||.+|+++|+||+....|+|+|+|++ +.+.|.+
T Consensus 92 ~~i~y~~~---~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~ 168 (207)
T cd08911 92 SEIIYWEM---QWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEF 168 (207)
T ss_pred CEEEEEEE---ECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEE
Confidence 99999998 57999999999999998776 446789999999999999999999999999999999994 2347999
Q ss_pred EEEEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHH
Q 004508 327 KHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELF 364 (748)
Q Consensus 327 Tyi~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~ 364 (748)
+|+.+.|||||||.|+ |.+.+..+..+ +.+|++-.
T Consensus 169 ~~~~~~dPgG~IP~~lvN~~~~~~~~~~---l~~l~~a~ 204 (207)
T cd08911 169 VLTYFDNPGVNIPSYITSWVAMSGMPDF---LERLRNAA 204 (207)
T ss_pred EEEEEeCCCCccCHHHHHHHHHhhccHH---HHHHHHHH
Confidence 9999999999999994 55555555554 66776654
No 18
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=5.7e-30 Score=256.61 Aligned_cols=180 Identities=13% Similarity=0.164 Sum_probs=161.2
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004508 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (748)
Q Consensus 172 a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~td 251 (748)
..++|++.+.++|+.||.+..+. ..+++||++|+|+..+++|++.+.+.. .|.+||++++++++||+||++|.
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~e------f~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt~ 93 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSEE------FGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENCC 93 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCCc------CCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCcE
Confidence 56799999999999999997643 568999999999999999999999877 79999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEEE
Q 004508 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHML 330 (748)
Q Consensus 252 IvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~~~VTyi~ 330 (748)
|+++.... -+...++|||||.++++.+..||. +++..|++|+..|| |||||+++++||++.|+. ++++|.+||++
T Consensus 94 I~~yvt~~-~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~l 169 (202)
T cd08902 94 VMRYTTAG-QLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYI 169 (202)
T ss_pred EEEEEccc-CCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEEE
Confidence 98776644 344679999999999998877875 77799999999888 999999999999999995 45689999999
Q ss_pred eeeCCCCccCccccchhHHHHHHHHHHHHHHHHH
Q 004508 331 AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (748)
Q Consensus 331 ~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~ 364 (748)
++|+|||+|+. .+++.+|..|++....||..+
T Consensus 170 q~DLkG~LPqs--iIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 170 QTDLRGMLPQS--AVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EecCCCCccHH--HHHHHhhHHHHHHHHHHHHhc
Confidence 99999999984 577899999999999999875
No 19
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.97 E-value=2.5e-29 Score=260.97 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=166.8
Q ss_pred CCCCccccCccccccc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHH
Q 004508 147 ASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQT 222 (748)
Q Consensus 147 ~~~~~~~d~~~~~~~~----~~~~~~dv~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vfev 222 (748)
.-..+++.|+..|+.+ |..++.-+.+.++|++..+++||+||++.. +....||+++++++|+++|+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~--------s~~~~fK~e~~vd~s~e~v~~l 99 (240)
T cd08913 28 TEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE--------DKFLSFKVEMVVHVDAAQAFLL 99 (240)
T ss_pred ccCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC--------CCccEEEEEEEEcCCHHHHHHH
Confidence 3466889999999965 688998899999999999999999999642 3568999999999999999999
Q ss_pred HHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc-CCC-cEEEEEEecCCCCCCCC
Q 004508 223 LMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG-TYVILYHSVFHKKCPRQ 300 (748)
Q Consensus 223 L~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~-~dG-syvI~~~SV~hp~~Pp~ 300 (748)
|.|++ .|++||.++.++++|+++|++.. +|+...+.| +||+++||||++++|++. ++| .|+|+.+|+.||++|++
T Consensus 100 L~D~~-~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~ 176 (240)
T cd08913 100 LSDLR-RRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPT 176 (240)
T ss_pred HhChh-hhhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCC
Confidence 99999 89999999999999999999864 677764433 359999999999999775 344 59999999999999999
Q ss_pred CCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCcc-ccchhHHHH
Q 004508 301 KGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITI 351 (748)
Q Consensus 301 ~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~-~~~~~~i~~ 351 (748)
+|||||+...|||+|.|.+++ .|+|||++++||| ++|.|+ +.+....|+
T Consensus 177 kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dPG-~LP~~~~N~~~~~~p~ 226 (240)
T cd08913 177 PEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATPG-VLPYISTDIAGLSSEF 226 (240)
T ss_pred CCcEEeeecccEEEEEECCCC-cEEEEEEEEeCCc-cccHHHhhhhhhccch
Confidence 999999999999999999765 7999999999996 999994 555555555
No 20
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=5.9e-29 Score=249.83 Aligned_cols=175 Identities=22% Similarity=0.302 Sum_probs=151.9
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeecCceE
Q 004508 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (748)
Q Consensus 173 ~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf-evL~d~d~~R~eWD~~~~e~~VVE~id~~td 251 (748)
..+|......+|+.|+.+..+. |..++.+|+...|+++|.+|+ ++|. .|..||.++.+.++||+||+++|
T Consensus 26 ~kgW~~~~~~~~vev~~kk~~d-----~~~l~lwk~s~ei~~~p~~vl~rvL~----dR~~WD~~m~e~~~Ie~Ld~n~d 96 (205)
T cd08907 26 FKGWHSAPGPDNTELACKKVGD-----GHPLRLWKVSTEVEAPPSVVLQRVLR----ERHLWDEDLLHSQVIEALENNTE 96 (205)
T ss_pred cCCceeecCCCCcEEEEEeCCC-----CCceEEEEEEEEecCCCHHHHHHHhh----chhhhhHHHHhhhhheeecCCCE
Confidence 4689999999999999875432 267889999999988777665 5555 39999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 004508 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 330 (748)
Q Consensus 252 IvY~~~~~~~lP~pvs~RDfV~lR~wrr~-~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~ 330 (748)
|.||.+ ..|.|+++||||++|.|+.+ +.|.|+|++.||+|++.|+.+| |||..+.+||+|+|.+.+ +|+|||+.
T Consensus 97 I~yY~~---~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi~ 171 (205)
T cd08907 97 VYHYVT---DSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHIC 171 (205)
T ss_pred EEEEEe---cCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEEE
Confidence 999998 35779999999999999865 6788999999999999999999 999999999999999865 79999999
Q ss_pred eeeCCCCccCcccc-chhHHHHHHHHHHHHHHHHHH
Q 004508 331 AIDWKCWRSYLQPS-SARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 331 ~vDpkGwiP~~~~~-~~~~i~~~mL~~va~LRe~~~ 365 (748)
++|++||+|.|+++ ++..++.. +.+||+.|.
T Consensus 172 rvD~rG~~P~Wynk~~g~~~a~~----l~~ir~sF~ 203 (205)
T cd08907 172 RADLRGRSPDWYNKVFGHLCAME----VARIRDSFP 203 (205)
T ss_pred EeCCCCCCcHHHHHhHHHHHHHH----HHHHHhhcc
Confidence 99999999999864 44444444 889999875
No 21
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.96 E-value=9.8e-29 Score=251.94 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=152.7
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEeecCce
Q 004508 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT 250 (748)
Q Consensus 172 a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~-aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~t 250 (748)
+..+|+++.+++||+||++..++ +.++.|||+++++ +++++++++|+|.+ +|++||.++.+ +++..++++
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~ 93 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGE 93 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCC
Confidence 45679999999999999997764 6688999999998 79999999999999 89999999987 678888889
Q ss_pred EEEEEEEccCCCCCCCCCceEEEEEEEEEc-CCC--cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 004508 251 DIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVK 327 (748)
Q Consensus 251 dIvY~~~~~~~lP~pvs~RDfV~lR~wrr~-~dG--syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VT 327 (748)
+|+|+.+ .+|||+++||||++|.++.. .+| .++|+.+|+.||++|+++|+||+....|+|+|+|.+++ .|.++
T Consensus 94 ~i~y~~~---k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i~ 169 (207)
T cd08910 94 TVIYWEV---KYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKVF 169 (207)
T ss_pred EEEEEEE---EcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEEE
Confidence 9999998 57999999999999887643 344 36889999999999999999999999999999998754 79999
Q ss_pred EEEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHH
Q 004508 328 HMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 328 yi~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
|+.+.|||||||.|+ |.+.+..+..+ +.+||+-..
T Consensus 170 ~~~~~DPgG~IP~wlvN~~~~~~~~~~---l~~l~ka~~ 205 (207)
T cd08910 170 MYYFDNPGGMIPSWLINWAAKNGVPNF---LKDMQKACQ 205 (207)
T ss_pred EEEEeCCCCcchHHHHHHHHHHhhHHH---HHHHHHHHh
Confidence 999999999999994 55555555444 777776553
No 22
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.96 E-value=6.7e-28 Score=245.81 Aligned_cols=178 Identities=17% Similarity=0.186 Sum_probs=155.5
Q ss_pred CCCEEEEeeCC----eEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecC
Q 004508 174 SPWTIFGCQNG----LRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG 248 (748)
Q Consensus 174 ~~Wklv~~~nG----IrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~ 248 (748)
.+|+++.+++| ++||++..++ +.+..||+++++ ++|+++++++|+|.+ .|++||.++.++++|+..++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~ 94 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG------TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEK 94 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC------CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCC
Confidence 68999999999 9999998764 557899999999 579999999999998 89999999999999998554
Q ss_pred -ceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEE
Q 004508 249 -HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVV 326 (748)
Q Consensus 249 -~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~~~V 326 (748)
+++|+|+.+ .+|||+++||||+.|.++.+.+|.++|+..|+.||.+|+. |+||+....|+|+|+|+. ++.+|.+
T Consensus 95 ~~~~i~y~~~---~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~ 170 (209)
T cd08870 95 SGTEIVRWVK---KFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQGSAC 170 (209)
T ss_pred CCcEEEEEEE---ECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCCceEE
Confidence 589999998 6799999999999998887668899999999999999999 999999999999999993 2337999
Q ss_pred EEEEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHH
Q 004508 327 KHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 327 Tyi~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
+|+++.||+|+||.|+ |.+.+..+. ..+.+||+.+.
T Consensus 171 ~~~~~~dp~G~IP~wlvN~~~~~~~~---~~l~~l~~a~~ 207 (209)
T cd08870 171 EVTYFHNPDGGIPRELAKLAVKRGMP---GFLKKLENALR 207 (209)
T ss_pred EEEEEECCCCCCCHHHHHHHHHhhhH---HHHHHHHHHHh
Confidence 9999999999999994 444444444 45778887664
No 23
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=3.9e-28 Score=246.48 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=148.1
Q ss_pred CCEEEEeeCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004508 175 PWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (748)
Q Consensus 175 ~Wklv~~~nGIrVy~r-~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIv 253 (748)
+|......|++.+.-+ ..+ |++++.+|+++.++++|++|+..|.+ .|.+||..+.++++|+++|++++|+
T Consensus 28 ~w~~~~~~~~~el~~~k~~~------gs~l~~~r~~~~i~a~~~~vl~~lld---~~~~Wd~~~~e~~vIe~ld~~~~I~ 98 (204)
T cd08908 28 GWVSYSTSEQAELSYKKVSE------GPPLRLWRTTIEVPAAPEEILKRLLK---EQHLWDVDLLDSKVIEILDSQTEIY 98 (204)
T ss_pred CCcccCCCCcEEEEEeccCC------CCCcEEEEEEEEeCCCHHHHHHHHHh---hHHHHHHHhhheEeeEecCCCceEE
Confidence 4555555555555433 333 27789999999999999999999986 3899999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEE-cCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 004508 254 HKQLYSDWLPWGMKRRDLLLRRYWRR-EDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 332 (748)
Q Consensus 254 Y~~~~~~~lP~pvs~RDfV~lR~wrr-~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~v 332 (748)
|+.+ ..|||+++||||++|.|+. ..+|.|+|...|+.|+.+|+. +|||....|||+|+|++++ +|+|||++++
T Consensus 99 Yy~~---~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~~ 172 (204)
T cd08908 99 QYVQ---NSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCRI 172 (204)
T ss_pred EEEc---cCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEEe
Confidence 9998 4689999999999999986 478889999999999999976 6999999999999999766 8999999999
Q ss_pred eCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHH
Q 004508 333 DWKCWRSYLQ-PSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 333 DpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
||||++|.|+ |.++..|+.. +.+||+.|.
T Consensus 173 DPgG~iP~W~~N~~g~~~~~~----~~~~r~sf~ 202 (204)
T cd08908 173 DLRGHMPEWYTKSFGHLCAAE----VVKIRDSFS 202 (204)
T ss_pred CCCCCCcHHHHhhHHHHHHHH----HHHHHhhcc
Confidence 9999999995 5677666655 889999884
No 24
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=2.9e-27 Score=237.76 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=153.3
Q ss_pred cCCCCCEEEEeeCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCc
Q 004508 171 IAPSPWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (748)
Q Consensus 171 ~a~~~Wklv~~~nGIrVy~r-~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~ 249 (748)
....+|++..++++..++.. ..+++. ..+..+|++++|++++++++..|++.. . +||+.+.++++|++++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~~ 88 (206)
T PF01852_consen 16 EDEDGWKLYKDKKNGDVYYKKVSPSDS----CPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDED 88 (206)
T ss_dssp HTCTTCEEEEEETTTCEEEEEEECSSS----TSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEETT
T ss_pred cCCCCCeEeEccCCCeEEEEEeCcccc----ccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCCC
Confidence 45679999995554444433 333211 267999999999999999999999644 2 999999999999999999
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCC-CCCeEEEEEeceEEEEEeCCCCCeeEEEE
Q 004508 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPR-QKGSVRACLKSGGYVITPMNHGKKSVVKH 328 (748)
Q Consensus 250 tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp-~~G~VRa~i~~gGwvI~Pl~~g~~~~VTy 328 (748)
++|+|+.++.. +|+|+++||||++|+|++..+|.|+|+.+|++||.+|+ .+|+|||.+..+||+|+|++++ .|+|||
T Consensus 89 ~~i~~~~~~~~-~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt~ 166 (206)
T PF01852_consen 89 TDIVYFVMKSP-WPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVTY 166 (206)
T ss_dssp EEEEEEEEE-C-TTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEEE
T ss_pred CeEEEEEeccc-CCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEEE
Confidence 99999998542 23499999999999999988999999999999999999 9999999999999999999876 699999
Q ss_pred EEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHHhcc
Q 004508 329 MLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFRAKQ 368 (748)
Q Consensus 329 i~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~~~~ 368 (748)
+.++|||||+|.|+ +.+... .+...+..||+.+++..
T Consensus 167 ~~~~D~~G~iP~~~~n~~~~~---~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 167 VSQVDPKGWIPSWLVNMVVKS---QPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEESSSSSHHHHHHHHHHH---HHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCChHHHHHHHHHH---hHHHHHHHHHHHHHHhc
Confidence 99999999999983 343333 34456888999988754
No 25
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.95 E-value=9.9e-27 Score=229.11 Aligned_cols=168 Identities=33% Similarity=0.527 Sum_probs=151.0
Q ss_pred CCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004508 174 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (748)
Q Consensus 174 ~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIv 253 (748)
.+|+++.+++|++||++..+. +....+|+++++++|+++|+++|.+.+ .|++||+.+.++++|+.++++..|+
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~ 87 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED------SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDII 87 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC------CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEE
Confidence 489999999999999998764 457899999999999999999999987 7999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeee
Q 004508 254 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAID 333 (748)
Q Consensus 254 Y~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vD 333 (748)
|+.+ ..|||+++||||+++++....+|.++++.+|++|+.+|+.+++|||.+..+||+|+|++++ .|.|||++++|
T Consensus 88 ~~~~---~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~-~~~vt~~~~~D 163 (193)
T cd00177 88 YYKT---KPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG-KTKVTYVLQVD 163 (193)
T ss_pred EEEe---eCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC-CEEEEEEEeeC
Confidence 9998 5688999999999999998777899999999999999999999999999999999999654 89999999999
Q ss_pred CCCCccCcc-ccchhHHHHH
Q 004508 334 WKCWRSYLQ-PSSARSITIR 352 (748)
Q Consensus 334 pkGwiP~~~-~~~~~~i~~~ 352 (748)
|+||+|.|+ +......+..
T Consensus 164 ~~g~iP~~~~~~~~~~~~~~ 183 (193)
T cd00177 164 PKGSIPKSLVNSAAKKQLAS 183 (193)
T ss_pred CCCCccHHHHHhhhhhccHH
Confidence 999999983 4433333333
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.95 E-value=1.1e-26 Score=232.73 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=154.7
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004508 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (748)
Q Consensus 172 a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~td 251 (748)
.+.+|+++.+++|++||++..++ +....+|++++|+++|++|++++.|++ .|++||+.+.++++|++++++.+
T Consensus 15 ~~~~W~~~~~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~~~~~ 87 (195)
T cd08876 15 PDGDWQLVKDKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTDDNER 87 (195)
T ss_pred CCCCCEEEecCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCCCCcE
Confidence 34569999999999999998764 456899999999999999999999999 79999999999999999999899
Q ss_pred EEEEEEccCCCCCCCCCceEEEEEEEEEcC-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 004508 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 330 (748)
Q Consensus 252 IvY~~~~~~~lP~pvs~RDfV~lR~wrr~~-dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~ 330 (748)
++|..+ ..|||+++||||+.+.++... +|.++|...|+.|+ +|+.+||||+....++|.|+|++++ +|+|+|++
T Consensus 88 i~~~~~---~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~vt~~~ 162 (195)
T cd08876 88 SVYTVI---DLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTRVTYQA 162 (195)
T ss_pred EEEEEE---ecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEEEEEEE
Confidence 999998 468899999999998777654 78899999999888 8999999999999999999999854 89999999
Q ss_pred eeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHH
Q 004508 331 AIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELF 364 (748)
Q Consensus 331 ~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~ 364 (748)
++||+||+|.|+ +...+..+.. .+++||+.+
T Consensus 163 ~~dp~g~iP~~lv~~~~~~~~~~---~l~~l~~~~ 194 (195)
T cd08876 163 YADPGGSIPGWLANAFAKDAPYN---TLENLRKQL 194 (195)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 999999999983 4444444444 477887754
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=1.4e-25 Score=229.45 Aligned_cols=188 Identities=20% Similarity=0.300 Sum_probs=162.9
Q ss_pred ccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE
Q 004508 164 EQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV 243 (748)
Q Consensus 164 ~~~~~dv~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VV 243 (748)
..+..++-+..+|++..+++|++||.+..++ +....+|++|+++++++.++++|.|.+ .+++|++.+.++++|
T Consensus 12 ~~~~~~l~~~~~W~~~~~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l 84 (215)
T cd08877 12 QENLKDLDESDGWTLQKESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKV 84 (215)
T ss_pred HHHHhcccCCCCcEEeccCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEE
Confidence 3445556667899999999999999997664 458999999999999999999999998 899999999999999
Q ss_pred EeecCceEEEEEEEccCCCCCCCCCceEEEEEEE-EEc-CCCcEEEEEEecCCCC---------CCCCC-CeEEEEEece
Q 004508 244 EHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYW-RRE-DDGTYVILYHSVFHKK---------CPRQK-GSVRACLKSG 311 (748)
Q Consensus 244 E~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~w-rr~-~dGsyvI~~~SV~hp~---------~Pp~~-G~VRa~i~~g 311 (748)
++++..+.|+|+.+ .+|||+++||+|+.... ... ++|+++|+..|+.|+. +|+.+ |+||+....+
T Consensus 85 ~~~~~~~~v~y~~~---~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~ 161 (215)
T cd08877 85 KQLGRADKVCYLRV---DLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYY 161 (215)
T ss_pred eecCCceEEEEEEE---eCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecc
Confidence 99999999999998 57999999999986332 233 7899999999999875 79998 9999999999
Q ss_pred EEEEEeCCCCCeeEEEEEEeeeCCCC-ccCc-cccchhHHHHHHHHHHHHHHHHHH
Q 004508 312 GYVITPMNHGKKSVVKHMLAIDWKCW-RSYL-QPSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 312 GwvI~Pl~~g~~~~VTyi~~vDpkGw-iP~~-~~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
||+|+|++++ +|.++|++++||||+ +|.| .+.+.+.++..+ +.+||..++
T Consensus 162 ~~~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~---~~~l~k~~~ 213 (215)
T cd08877 162 GFVITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLL---FEKIQKAAK 213 (215)
T ss_pred eEEEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 9999999865 799999999999998 9999 466777787777 666666554
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.88 E-value=8e-22 Score=199.06 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=144.4
Q ss_pred ccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeec-
Q 004508 170 VIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD- 247 (748)
Q Consensus 170 v~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id- 247 (748)
..+..+|+++.+++++.||....+. +....+|+.++. ++||+.|+++++|.+ +|++||.++.+.++|++..
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~------~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~ 97 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK------TGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPV 97 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC------CCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCC
Confidence 4567799999999999999943332 348899999997 699999999999988 9999999999999999864
Q ss_pred CceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEE-eC--CCCCee
Q 004508 248 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVIT-PM--NHGKKS 324 (748)
Q Consensus 248 ~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~-Pl--~~g~~~ 324 (748)
.+++|+|+.. .+|.|+++||||++|.|...++..|+|+..|+.|+..|+++++||+....+||+|+ |. ++++.|
T Consensus 98 tg~~vv~w~~---kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~ 174 (219)
T KOG2761|consen 98 TGTEVVYWVK---KFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGC 174 (219)
T ss_pred CCceEEEEEE---eCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCcc
Confidence 5789999998 67999999999999888875546799999999999999999999999999999999 54 445679
Q ss_pred EEEEEEeeeCCCCccCccc
Q 004508 325 VVKHMLAIDWKCWRSYLQP 343 (748)
Q Consensus 325 ~VTyi~~vDpkGwiP~~~~ 343 (748)
.+.|..+.||+|-+|.|+.
T Consensus 175 ~~~~~~~~~p~~~iP~~~v 193 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVV 193 (219)
T ss_pred EEEEEEEECCCCCCcHHHH
Confidence 9999999999999999853
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.55 E-value=6.3e-15 Score=161.11 Aligned_cols=168 Identities=19% Similarity=0.310 Sum_probs=140.7
Q ss_pred cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEE-EEecCcHHHHHHHHHhCCCCccccccccceeE
Q 004508 163 MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAV-GVVDGTSEAIFQTLMSLGASRSVWDFCFYRGC 241 (748)
Q Consensus 163 ~~~~~~dv~a~~~Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~Kav-gvV~aspe~VfevL~d~d~~R~eWD~~~~e~~ 241 (748)
+.+.+.++....+|+++...+.+++|++..++++ -..-.+||. ++..+++.+++.++.+.+ .|.+|+.+++.+.
T Consensus 392 ~~~~~~~~g~d~nwqlFaeegemkmy~re~eeng----~~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~ 466 (611)
T KOG1739|consen 392 MTYSLQDVGGDANWQLFAEEGEMKMYRREVEENG----IVLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFH 466 (611)
T ss_pred hhhhcccccccchhhhhcccCCccccceeeccCC----cccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhce
Confidence 5677778888888999999999999999877543 345567777 566789999999999999 8999999999999
Q ss_pred EEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc----CCC--cEEEEEEecCCCCCCCCCCeEEEEEeceEEEE
Q 004508 242 VVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE----DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGGYVI 315 (748)
Q Consensus 242 VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~----~dG--syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI 315 (748)
|||+|.+++-|+|++.+. -||.++||-.++.++|+- ++| .|++|++|++|.+.|.....||+.+... +|
T Consensus 467 vve~is~d~~~~~qthkr---vwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~--mi 541 (611)
T KOG1739|consen 467 VVETISDDAIIIYQTHKR---VWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVA--MI 541 (611)
T ss_pred eeeeecCCeEEEEecccc---cCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeee--ee
Confidence 999999999999998854 479999999999888763 344 5999999999999999999999987532 22
Q ss_pred E-----------eCC-CCCeeEEEEEEeeeCCCCccC
Q 004508 316 T-----------PMN-HGKKSVVKHMLAIDWKCWRSY 340 (748)
Q Consensus 316 ~-----------Pl~-~g~~~~VTyi~~vDpkGwiP~ 340 (748)
+ |++ +.-.|.+||+.+++||||.|.
T Consensus 542 cqt~v~~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 542 CQTLVSPPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred eecccCCcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 2 111 134899999999999999995
No 30
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.54 E-value=3e-14 Score=130.31 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=75.7
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecce---EEecCCccccccceeEEEEEEec
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI---RVTDNGRESIHRKVFFIFTLYNT 88 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~---~V~d~g~~~~~~~~~yvf~i~~~ 88 (748)
+||||.|.|... ..-|++|||||+++.|+||| +|.+ ..|.|.+.|+.++ .|.+.-.....++..|.|.|..+
T Consensus 1 KeG~L~K~g~~~--~k~wkkRwFvL~~~~L~Yyk-~~~d--~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~ 75 (103)
T cd01251 1 KEGFMEKTGPKH--TEGFKKRWFTLDDRRLMYFK-DPLD--AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP 75 (103)
T ss_pred CceeEEecCCCC--CCCceeEEEEEeCCEEEEEC-CCCC--cCcCcEEEeeccccceeEeccCCccccccccceEEEEeC
Confidence 699999999853 22389999999999999999 4443 6899999987654 45432111112334569999875
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 89 SNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
+|+|.|.|.|.+|+..||+||+.|+.
T Consensus 76 ---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999975
No 31
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.49 E-value=5.9e-13 Score=137.34 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=112.8
Q ss_pred CCCceEEEEEEecCcHHHHHHHHHhCCCCcccccc----ccceeEEEEeecCc--------eEEEEEEEccCCCCC-CCC
Q 004508 201 DDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF----CFYRGCVVEHLDGH--------TDIIHKQLYSDWLPW-GMK 267 (748)
Q Consensus 201 s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~----~~~e~~VVE~id~~--------tdIvY~~~~~~~lP~-pvs 267 (748)
...-+-|+.|+|...|..|.++|||.+ .|-. .+..+++++.|+.. ..++|.+++ .|. .+.
T Consensus 57 ~~~eASR~~glV~m~~~~lVe~lmD~~----kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~---~pSpLVp 129 (229)
T cd08875 57 FTTEASRACGLVMMNAIKLVEILMDVN----KWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQ---VPSPLVP 129 (229)
T ss_pred CeEEEEeeeEEEecCHHHHHHHHhChh----hhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcc---cCccccc
Confidence 345677999999999999999999755 5554 88899999888543 688999984 443 589
Q ss_pred CceEEEEEEEEEcCCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCC
Q 004508 268 RRDLLLRRYWRREDDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 337 (748)
Q Consensus 268 ~RDfV~lR~wrr~~dGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGw 337 (748)
+|||+++||.++.+||+++|+..|+++. ..|+.++++|++..++||+|+|+++| .|+|||+-|+|...|
T Consensus 130 ~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~ 199 (229)
T cd08875 130 TREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEK 199 (229)
T ss_pred CCeEEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCC
Confidence 9999999999999999999999999988 68888999999999999999999887 899999999998887
No 32
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.49 E-value=1.7e-13 Score=122.89 Aligned_cols=95 Identities=18% Similarity=0.335 Sum_probs=74.8
Q ss_pred cceeeEEEeeec-ccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecC
Q 004508 11 RMEGWLHLIRSN-RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 11 ~~eGwl~~~g~~-~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
|+||||++++.. ++....|++|||||+|+.|.|||.+. + ..|.+.+.|.++ +|+.. .+. +..|+|.|..
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~-~--~~~~~~I~L~~~-~v~~~-~~~---~k~~~F~I~~-- 70 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ-D--EKAEGLIFLSGF-TIESA-KEV---KKKYAFKVCH-- 70 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCC-C--CccceEEEccCC-EEEEc-hhc---CCceEEEECC--
Confidence 689999999853 22455799999999999999999544 3 678999999988 44421 111 2468999964
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
++.+.+.|+|.|.||+.+||+||+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34599999999999999999999876
No 33
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.43 E-value=8.2e-13 Score=115.79 Aligned_cols=91 Identities=25% Similarity=0.446 Sum_probs=73.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~ 91 (748)
|||||++++... ..|++|||||+++.|.||+.+.... ..|.+.+.|++|+...+.+ .-++|.|... +
T Consensus 1 ~~G~L~k~~~~~---~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01246 1 VEGWLLKWTNYL---KGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDS-------DDKCFTIDTG--G 67 (91)
T ss_pred CeEEEEEecccC---CCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCC-------CCcEEEEEcC--C
Confidence 799999998643 4599999999999999999665322 4899999999885444422 2578888764 4
Q ss_pred CceEEEecCCHHHHHHHHHHHHHH
Q 004508 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
++.+.|.|.|.+|+.+|+.||+.|
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC
Confidence 589999999999999999999876
No 34
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.37 E-value=2.8e-12 Score=116.54 Aligned_cols=96 Identities=14% Similarity=0.234 Sum_probs=74.1
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEec-CCccccccceeEEEEEEec
Q 004508 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNT 88 (748)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d-~g~~~~~~~~~yvf~i~~~ 88 (748)
|.++|||.++|... .-|++|||||+++.|+|||.+. +..|++.+-|..+ .|+. .+.+...+ .-++|.|..
T Consensus 2 v~k~G~L~Kkg~~~---k~WkkRwfvL~~~~L~yyk~~~---~~~~~~~I~L~~~-~v~~~~~~~~~~~-~~~~F~I~t- 72 (100)
T cd01233 2 VSKKGYLNFPEETN---SGWTRRFVVVRRPYLHIYRSDK---DPVERGVINLSTA-RVEHSEDQAAMVK-GPNTFAVCT- 72 (100)
T ss_pred cceeEEEEeeCCCC---CCcEEEEEEEECCEEEEEccCC---CccEeeEEEeccc-EEEEccchhhhcC-CCcEEEEEC-
Confidence 45899999999864 2399999999999999999654 3789999999844 5542 22221112 257899854
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
.++++.|.|.|.+|+..||+||..+.
T Consensus 73 --~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 --KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred --CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 58999999999999999999998764
No 35
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.37 E-value=2.8e-12 Score=115.65 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=71.7
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
..|||.|.|.+..... |++|||||++ +.|+||| ++.+ ..|+|++-|.+++.+.+... .-+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~-WkkRWFvL~~~~~~L~Yyk-~~~d--~~p~G~I~L~~~~~~~~~~~------~~~~F~i~t-- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRG-RRSRWFALDDRTCYLYYYK-DSQD--AKPLGRVDLSGAAFTYDPRE------EKGRFEIHS-- 68 (95)
T ss_pred CcccEEEecCCCCCcC-ceeEEEEEcCCCcEEEEEC-CCCc--ccccceEECCccEEEcCCCC------CCCEEEEEc--
Confidence 4699999998655444 8999999984 5899999 4433 78999999998755543221 135788864
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
.++.+.|.|.|.+|+..|++||+.|
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 5799999999999999999999987
No 36
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.36 E-value=4.5e-12 Score=115.82 Aligned_cols=91 Identities=22% Similarity=0.455 Sum_probs=74.1
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecc------eeeeeccCCCCC--CCCCceEEEeecceEEecCCccccccceeE
Q 004508 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFF 81 (748)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~--~~~Pi~~~vid~~~~V~d~g~~~~~~~~~y 81 (748)
+.++|||.+.+ -||+|||||++. .|.|||..+..+ ...|.|++-|++|..|...-. .-| -|
T Consensus 2 v~k~GyL~K~K-------~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~---~~ 70 (101)
T cd01257 2 VRKSGYLRKQK-------SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH---RH 70 (101)
T ss_pred ccEEEEEeEec-------CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc---Ce
Confidence 67999999963 389999999999 899999776532 268999999999998876322 211 28
Q ss_pred EEEEEecCCCCceEEEecCCHHHHHHHHHHHHH
Q 004508 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
+|.|+. .++++-|+|.|.+|++.|+++|.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 999987 448999999999999999999964
No 37
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.36 E-value=3.9e-12 Score=117.01 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=77.5
Q ss_pred ceeeEEEeeec--ccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCcccc---ccceeEEEEEE
Q 004508 12 MEGWLHLIRSN--RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI---HRKVFFIFTLY 86 (748)
Q Consensus 12 ~eGwl~~~g~~--~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~---~~~~~yvf~i~ 86 (748)
+||||+|++.+ ++|+.-|++|||||++..|.|||.++.. ...|.|++-|.++..|+.-..+.. +...-|.|.|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~ 80 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV 80 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc-ccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence 69999999744 4677679999999999999999965532 357999999998877764332221 22345899997
Q ss_pred ecCCCCceEEEecCCHHHHHHHHHHHHH
Q 004508 87 NTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 87 ~~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
.. ++++.|.|.|.+|+..|++||+.
T Consensus 81 t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 81 HD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred eC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 73 57899999999999999999975
No 38
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=7.8e-12 Score=117.88 Aligned_cols=97 Identities=22% Similarity=0.442 Sum_probs=75.4
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~ 90 (748)
++||||+|.|... .-|++|||||+++.|.|||. +. +..|.+++.|++++ |+.... ...-+.|.|+...+
T Consensus 1 ~k~G~L~K~~~~~---~~WkkRwfvL~~~~L~yyk~-~~--~~~~~g~I~L~~~~-v~~~~~----~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLLKQGGRV---KTWKRRWFILTDNCLYYFEY-TT--DKEPRGIIPLENVS-IREVED----PSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEEEeCCCC---CCeEeEEEEEECCEEEEEcC-CC--CCCceEEEECCCcE-EEEccc----CCCCeeEEEECCcc
Confidence 5899999988643 44999999999999999994 33 37899999999764 443111 12357898888654
Q ss_pred ------------------CCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 91 ------------------HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 91 ------------------~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
..+.+.|.|.|.+|+..|+.||+.++..
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 2367789999999999999999999774
No 39
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.34 E-value=9.8e-12 Score=127.40 Aligned_cols=111 Identities=11% Similarity=-0.032 Sum_probs=89.7
Q ss_pred Cccccccccc--eeEEEEeecCce----EEEEEEEccCCCCCCCCCceEEEEEE-EEEcC-CCcEEEEEEecCCCCCC-C
Q 004508 229 SRSVWDFCFY--RGCVVEHLDGHT----DIIHKQLYSDWLPWGMKRRDLLLRRY-WRRED-DGTYVILYHSVFHKKCP-R 299 (748)
Q Consensus 229 ~R~eWD~~~~--e~~VVE~id~~t----dIvY~~~~~~~lP~pvs~RDfV~lR~-wrr~~-dGsyvI~~~SV~hp~~P-p 299 (748)
.-.+|.+.+. ++++|+..++.. .|+|+.+ .+|||+++|||+.+.. ....+ ...++++..++.|+.+| +
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~---~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTY---KFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEE---ECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 4679999999 899999887665 7888888 6799999999999977 33322 14688899999999999 9
Q ss_pred CCCeEEEEEece-EEEEEeCCCCCeeEEEEEE--eeeCCCCccCcc
Q 004508 300 QKGSVRACLKSG-GYVITPMNHGKKSVVKHML--AIDWKCWRSYLQ 342 (748)
Q Consensus 300 ~~G~VRa~i~~g-GwvI~Pl~~g~~~~VTyi~--~vDpkGwiP~~~ 342 (748)
.+|||||.-..+ .|.+.|.+.+..+.|+|++ +.||||+||.|+
T Consensus 141 ~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl 186 (208)
T cd08864 141 YENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWL 186 (208)
T ss_pred CCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHH
Confidence 999999996655 6666677422256677777 999999999994
No 40
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.33 E-value=9.4e-12 Score=111.51 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=70.6
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~ 91 (748)
++|||.|.|.---| |++|||||++..|.|||.++.. ...|.|++-|.+|+-+.+.. .-..|.|... .
T Consensus 1 ~~G~L~K~~~~~k~---Wk~RwFvL~~g~L~Yyk~~~~~-~~~~~G~I~L~~~~i~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01247 1 TNGVLSKWTNYING---WQDRYFVLKEGNLSYYKSEAEK-SHGCRGSIFLKKAIIAAHEF-------DENRFDISVN--E 67 (91)
T ss_pred CceEEEEeccccCC---CceEEEEEECCEEEEEecCccC-cCCCcEEEECcccEEEcCCC-------CCCEEEEEeC--C
Confidence 58999999974333 8899999999999999976643 25689999998886555422 1346666533 4
Q ss_pred CceEEEecCCHHHHHHHHHHHHH
Q 004508 92 NDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
++++.|.|.|.+|...|++||+.
T Consensus 68 ~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 68 NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CeEEEEEeCCHHHHHHHHHHHhh
Confidence 59999999999999999999975
No 41
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.32 E-value=1.2e-11 Score=111.43 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=72.4
Q ss_pred ceeeEEEeeecccccccceeeEEEEecc--eeeeeccCCCCCCCCCceEEEeecceEEecC----CccccccceeEEEEE
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDH--FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN----GRESIHRKVFFIFTL 85 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~--~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~----g~~~~~~~~~yvf~i 85 (748)
.||||.|.|... .-|++|||||.++ .|.||+.. . +..|.+++-|..++.|... +... |...-+.|.|
T Consensus 1 ~~G~L~K~g~~~---k~WkkRwFvL~~~~~~L~Yy~~~-~--~~~~~g~I~L~~~~~v~~~~~~~~~~~-~~~~~~~f~i 73 (101)
T cd01235 1 CEGYLYKRGALL---KGWKPRWFVLDPDKHQLRYYDDF-E--DTAEKGCIDLAEVKSVNLAQPGMGAPK-HTSRKGFFDL 73 (101)
T ss_pred CeEEEEEcCCCC---CCccceEEEEECCCCEEEEecCC-C--CCccceEEEcceeEEEeecCCCCCCCC-CCCCceEEEE
Confidence 489999999743 3489999999954 99999944 3 3789999999888777642 1111 2223466777
Q ss_pred EecCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 86 ~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
. .+.+.+.|.|.|.||+..|++||+.+|
T Consensus 74 ~---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 74 K---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred E---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 4 357899999999999999999999864
No 42
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.29 E-value=1.9e-11 Score=107.40 Aligned_cols=100 Identities=28% Similarity=0.466 Sum_probs=80.2
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccc--cccceeEEEEEEec
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRES--IHRKVFFIFTLYNT 88 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~--~~~~~~yvf~i~~~ 88 (748)
.+||||++++ .+..-|++|||||.++.|.||+.........|.+.+-|+++ .|.+..... -....-+.|.|.++
T Consensus 2 ~~~G~L~~~~---~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS---SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE---SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC---CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999999 33344889999999999999996664344899999999988 666532221 22356788999887
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
.. ..+.|.|.|.+|+..|++||+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 54 899999999999999999999985
No 43
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.26 E-value=2.5e-11 Score=110.78 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=76.2
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCc-eEEEeecceEEecCCccccccceeEEEEEEecCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~ 90 (748)
.||||-+.|.+=...--||+|||||+||.|+|||+++. ..|. +++.|..|..|.......-.-...|.|.|..+
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~---~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp-- 76 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSK---DDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA-- 76 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCc---cCCCCceEEcccceEEeeccccccccccCcEEEEEcC--
Confidence 58999998885334555999999999999999997664 3455 78888888877654322111122589999654
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
++++.|.|.|.+|++.|+++|..|+
T Consensus 77 -~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 77 -DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred -CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 5999999999999999999999883
No 44
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.25 E-value=2.9e-11 Score=111.32 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=73.9
Q ss_pred eeeEEEeeeccc-ccccceeeEEEEecce-------eeeeccCCCCCCCCCceEEEeecceEEecCCcc--ccccceeEE
Q 004508 13 EGWLHLIRSNRI-GLQYSRKRYFLLEDHF-------LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--SIHRKVFFI 82 (748)
Q Consensus 13 eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~-------l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~--~~~~~~~yv 82 (748)
||||.|.|.... +..-|++|||||+++. |.|||... +..|.+++-|+.|..|++ |.. .-+...-|+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~---~~k~~g~I~L~~~~~v~~-~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSR---KFKLEFVIDLESCSQVDP-GLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCC---CCccceEEECCccEEEcc-cccccccCcccceE
Confidence 899999988543 5567999999999876 59999433 379999999998766543 221 111233578
Q ss_pred EEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
|.|.- ..|++-|+|.|.||+..||+||.+.
T Consensus 78 f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 88883 5799999999999999999999753
No 45
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.23 E-value=5.3e-11 Score=104.89 Aligned_cols=94 Identities=24% Similarity=0.434 Sum_probs=70.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~ 91 (748)
|||||++++... ...|++|||||+++.|.||+..+.. ...|.+++-+..| .|....... +.-+.|.|....
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~---~~~~~f~i~~~~-- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDY-DNAHVKEIDLRRC-TVRHNGKQP---DRRFCFEVISPT-- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCccc-ccccceEEeccce-EEecCcccc---CCceEEEEEcCC--
Confidence 799999987543 4569999999999999999965532 2567777777655 444321111 236899998653
Q ss_pred CceEEEecCCHHHHHHHHHHHHHH
Q 004508 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
+.+.|.|.|.+|+.+|+.||+.|
T Consensus 72 -~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 -KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred -cEEEEECCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 46
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.22 E-value=5.6e-11 Score=108.56 Aligned_cols=94 Identities=27% Similarity=0.433 Sum_probs=68.4
Q ss_pred CcceeeEEEeeecccccccceeeEEEEe-cceeeeeccCCCCC--CCCCceEEEeecceEEe-cCCccccccceeEEEEE
Q 004508 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTL 85 (748)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~--~~~Pi~~~vid~~~~V~-d~g~~~~~~~~~yvf~i 85 (748)
+.+||||.|.|.. ..-|++|||||+ +..|.|||.+|.+. +..||+...|.+|..+. +.. .-+.|.|
T Consensus 1 v~k~G~L~K~g~~---~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~-------~~~~F~i 70 (102)
T cd01241 1 VVKEGWLHKRGEY---IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERP-------RPNTFII 70 (102)
T ss_pred CcEEEEEEeecCC---CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCC-------CcceEEE
Confidence 3589999999974 334899999999 77788888788653 26788888887774332 221 3477877
Q ss_pred EecC---CCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 86 YNTS---NHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 86 ~~~~---~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
-... ...| +|.|.|.||++.||+||+.+
T Consensus 71 ~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 71 RCLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EeccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 6322 1223 56799999999999999876
No 47
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.21 E-value=7.4e-11 Score=108.38 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=74.0
Q ss_pred ceeeEEEeeecc------cccccceeeEEEEe-cceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEE
Q 004508 12 MEGWLHLIRSNR------IGLQYSRKRYFLLE-DHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFT 84 (748)
Q Consensus 12 ~eGwl~~~g~~~------~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~ 84 (748)
+.|||++.+..+ ...-=||+|||||+ +.+|+||+.++.+ ..|.|++-|..|..|.+.- +. .+ .-+.|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~G~IdL~~~~~V~~~~-~~-~~-~~~~f~ 75 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQGTIDMNQCTDVVDAE-AR-TG-QKFSIC 75 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccceEEEccceEEEeecc-cc-cC-CccEEE
Confidence 579999998874 45566999999997 6899999866433 6899999998888887532 11 12 257888
Q ss_pred EEecCCCCceEEEecCCHHHHHHHHHHHH
Q 004508 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (748)
Q Consensus 85 i~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (748)
|-.. +|++-|.|.|.||++.|+++|.
T Consensus 76 I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 76 ILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 8544 6999999999999999999986
No 48
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.19 E-value=2.2e-10 Score=98.74 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=80.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~ 90 (748)
.++|||+++... +.+-|++|||+|.++.|.||+.++......|.+.+.|+++ +|........ ...-+.|.|..+..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 589999998875 5667999999999999999997776444788999999988 6665433221 23458888887643
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
..+.|.|.|.+|+.+|+.+|+.|+
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999885
No 49
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.11 E-value=3.5e-10 Score=106.69 Aligned_cols=104 Identities=20% Similarity=0.358 Sum_probs=74.6
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCC-CCCCCceEEEeecceE--EecCCccccccceeEEEEEE
Q 004508 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIR--VTDNGRESIHRKVFFIFTLY 86 (748)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vid~~~~--V~d~g~~~~~~~~~yvf~i~ 86 (748)
++|.|||...-... |..-||+|||||+|+.|.||| +|.+ ....|++++-|.+|+. |++--|+.-..+--|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 57899999866554 778899999999999999999 5554 3478999999999874 43333333333334444444
Q ss_pred ecCC---------------CCceEEEecCCHHHHHHHHHHHHHH
Q 004508 87 NTSN---------------HNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 87 ~~~~---------------~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
.... ..-.+-|+|.|.||...|++||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 3221 1123678999999999999999764
No 50
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.04 E-value=9.5e-10 Score=103.61 Aligned_cols=97 Identities=24% Similarity=0.422 Sum_probs=77.5
Q ss_pred ceeeEEEeeecccc--cc-------------cceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCcc---
Q 004508 12 MEGWLHLIRSNRIG--LQ-------------YSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--- 73 (748)
Q Consensus 12 ~eGwl~~~g~~~~g--~~-------------~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~--- 73 (748)
+||||++++--+.- +. -|++|||||++..|.||+ +|.+ ..|.+.+++|....|+..+.+
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~-~~~~--~~~~~vil~D~~f~v~~~~~~~~~ 77 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMD-DPSS--AQILDVILFDVDFKVNGGGKEDIS 77 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEc-CCCC--CceeeEEEEcCCccEEeCCccccc
Confidence 58999988655432 11 369999999999999999 5544 799999999999988876553
Q ss_pred ------ccccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 74 ------SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 74 ------~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
-.++ .-|.|+|-| .+|+++|.|.|.+++..|++||+.|
T Consensus 78 ~~~~~~~~~~-~~~~~~i~t---~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 78 LAVELKDITG-LRHGLKITN---SNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ccccccccCC-CceEEEEEc---CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1123 368899954 5799999999999999999999876
No 51
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.01 E-value=7.6e-10 Score=100.64 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=67.1
Q ss_pred eeeEEEeeecccccccceeeEEEEec----ceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEec
Q 004508 13 EGWLHLIRSNRIGLQYSRKRYFLLED----HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (748)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g----~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~ 88 (748)
-|||.|.|.+ . .--|++|||+|.+ +.|+||+..+ + ..|++.+.+..+ .|...- +..- +..|.|.|++.
T Consensus 2 ~G~l~K~g~~-~-~K~wK~rwF~l~~~~s~~~l~yf~~~~-~--~~p~gli~l~~~-~V~~v~-ds~~-~r~~cFel~~~ 73 (98)
T cd01245 2 KGNLLKRTKS-V-TKLWKTLYFALILDGSRSHESLLSSPK-K--TKPIGLIDLSDA-YLYPVH-DSLF-GRPNCFQIVER 73 (98)
T ss_pred CCccccCCCC-c-ccccceeEEEEecCCCCceEEEEcCCC-C--CCccceeecccc-EEEEcc-cccc-CCCeEEEEecC
Confidence 4999998863 1 3348999999998 9999999555 3 789985555544 554310 1111 12599999998
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHH
Q 004508 89 SNHNDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
..| ..+.|+|.+ ||++.||++|+.
T Consensus 74 ~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 74 ALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 654 677888888 999999999975
No 52
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.5e-09 Score=112.93 Aligned_cols=98 Identities=29% Similarity=0.509 Sum_probs=77.9
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecce--EEecCCccccccceeEEEEEE
Q 004508 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI--RVTDNGRESIHRKVFFIFTLY 86 (748)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~--~V~d~g~~~~~~~~~yvf~i~ 86 (748)
.++.||||.|.|.| |---|++|||||..|+|+||+ --. +++|-|.+.++.-. .|+|- +..|.|.||
T Consensus 259 npdREGWLlKlgg~--rvktWKrRWFiLtdNCLYYFe-~tT--DKEPrGIIpLeNlsir~VedP-------~kP~cfEly 326 (395)
T KOG0930|consen 259 NPDREGWLLKLGGN--RVKTWKRRWFILTDNCLYYFE-YTT--DKEPRGIIPLENLSIREVEDP-------KKPNCFELY 326 (395)
T ss_pred CccccceeeeecCC--cccchhheeEEeecceeeeee-ecc--CCCCCcceeccccceeeccCC-------CCCCeEEEe
Confidence 46799999999997 444599999999999999998 333 37888777776322 55553 358999999
Q ss_pred ecCCCCc-------------------eEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 87 NTSNHND-------------------QLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 87 ~~~~~~~-------------------~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
+..++.. .|++.|-|+||...||++++.++..
T Consensus 327 ~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 327 IPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred cCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 9877442 4679999999999999999999763
No 53
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.91 E-value=7e-09 Score=94.43 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=65.3
Q ss_pred ccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCCCceEEEecCCH
Q 004508 23 RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSP 102 (748)
Q Consensus 23 ~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~ 102 (748)
+.+. -|++|||+|.++.|.|||.+. ..|++++-|..-.-|+..+..... .-|+|.|... ++++.|-|.|.
T Consensus 16 ~~~~-n~KkRwF~Lt~~~L~Y~k~~~----~~~~g~I~L~~i~~ve~v~~~~~~--~~~~fqivt~---~r~~yi~a~s~ 85 (98)
T cd01244 16 KKVL-HFKKRYFQLTTTHLSWAKDVQ----CKKSALIKLAAIKGTEPLSDKSFV--NVDIITIVCE---DDTMQLQFEAP 85 (98)
T ss_pred ccCc-CCceeEEEECCCEEEEECCCC----CceeeeEEccceEEEEEcCCcccC--CCceEEEEeC---CCeEEEECCCH
Confidence 4565 489999999999999999433 678999998766566665543322 2489999775 47999999999
Q ss_pred HHHHHHHHHHHHH
Q 004508 103 EEAAKWIHSLQEA 115 (748)
Q Consensus 103 eea~~W~~a~~~a 115 (748)
+|+..|++||+.+
T Consensus 86 ~E~~~Wi~al~k~ 98 (98)
T cd01244 86 VEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 54
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.90 E-value=1.2e-08 Score=92.98 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=73.6
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC--CCCCceEEEeecceEEecCCccccccceeEEEEEEec
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~ 88 (748)
.+||||.+.+....+ |+.|||+|-...|-|++.++... .-.+...+-|+++ .|++.. +....+.|.|..+
T Consensus 3 ikeG~L~K~~~~~~~---~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~-~v~~~~----~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTTEK---TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM-QVCEGD----NLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCCCC---ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE-EEEeCC----CCCcCceEEEecC
Confidence 489999999876544 67999999988999999665321 1245556667764 666531 2345788888554
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 89 SNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
. +.+.+.|.|+||...||+||+.|+++
T Consensus 75 ~---rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 Q---RCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred C---cEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 3 99999999999999999999999863
No 55
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.89 E-value=1.2e-08 Score=92.72 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=66.7
Q ss_pred ceeeEEEeee-----cccccccceeeEEEEecceeeeeccCCCCCCCCCce--EEEeecceEEe-cCCccccccceeEEE
Q 004508 12 MEGWLHLIRS-----NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVR--SAIIDSCIRVT-DNGRESIHRKVFFIF 83 (748)
Q Consensus 12 ~eGwl~~~g~-----~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~--~~vid~~~~V~-d~g~~~~~~~~~yvf 83 (748)
|||+|.++-. ++.+...|++|||||+|+.|.|||...... +.+.+ .+-|+++ .|+ +.+-. +.-++|
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~-~i~~~~~~~----k~~~~F 74 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGA-QCEVASDYT----KKKHVF 74 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCC-EEEecCCcc----cCceEE
Confidence 6899997654 455677899999999999999999543221 12212 2334444 332 21111 235899
Q ss_pred EEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
+|... +++.+.|.|.|.||+..|+.||+.|
T Consensus 75 ~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 75 RLRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 99864 6799999999999999999999753
No 56
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.89 E-value=8.3e-09 Score=92.65 Aligned_cols=97 Identities=23% Similarity=0.368 Sum_probs=73.2
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecce-EEecCCccccccceeEEEEEEecC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI-RVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~-~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
..-|||-.....-+. .=.++|||||..+.|+|||..- +++|-..+.+|+.+ |.-+.|- .+ + -|+|.+||+.
T Consensus 2 irkgwl~~~n~~~m~-ggsK~~WFVLt~~~L~wykd~e---eKE~kyilpLdnLk~Rdve~gf--~s-k-~~~FeLfnpd 73 (110)
T cd01256 2 IRKGWLSISNVGIMK-GGSKDYWFVLTSESLSWYKDDE---EKEKKYMLPLDGLKLRDIEGGF--MS-R-NHKFALFYPD 73 (110)
T ss_pred eeeeeEEeeccceec-CCCcceEEEEecceeeeecccc---cccccceeeccccEEEeecccc--cC-C-CcEEEEEcCc
Confidence 356999876554322 2268999999999999999333 38899989999764 3333332 22 2 3999999865
Q ss_pred -----CCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 90 -----NHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 90 -----~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
.+.++++|+|.|+||++.|+-+|-.|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 44589999999999999999999887
No 57
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.89 E-value=5.6e-09 Score=97.10 Aligned_cols=95 Identities=34% Similarity=0.500 Sum_probs=54.4
Q ss_pred ceeeEEEeeecccccccceeeEEEEe-cceeeeeccCCCCC------CCCCceEEEeecce------EEe---c-CCccc
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK------NEDPVRSAIIDSCI------RVT---D-NGRES 74 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~------~~~Pi~~~vid~~~------~V~---d-~g~~~ 74 (748)
|||||||.+.. +|.. ||+|||||+ ++.|.|||. |.+. .+.+.+.+.-+... .+. + +-.+.
T Consensus 1 k~G~l~K~~~~-~~kg-Wk~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKG-WKKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcC-ccccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999998876 6777 899999999 999999996 3221 01222221111111 111 0 12334
Q ss_pred cccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 75 IHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 75 ~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
+|.+++++ ...++++.|.|.|.+|-..|++||+.|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 44444444 357899999999999999999999987
No 58
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.85 E-value=1.9e-08 Score=86.51 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=72.9
Q ss_pred ceeeEEEeeeccc-ccccceeeEEEEecceeeeeccCCCCCCCCCc-eEEEeecceEEecCCccccccceeEEEEEEecC
Q 004508 12 MEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 12 ~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
.+|||.+++.... +...|++|||+|.++.|.||+.++.. .+. +..-+.+.. |....... +.-++|.|.+..
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~---~~~~~~~~l~~~~-v~~~~~~~---~~~~~F~i~~~~ 73 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKK---EIKPGSIPLSEIS-VEEDPDGS---DDPNCFAIVTKD 73 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCC---cCCCCEEEccceE-EEECCCCC---CCCceEEEECCC
Confidence 4799999988754 45669999999999999999966643 222 345555443 55432211 246899998875
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
.+.+.+.|.|.|.+|+..|++||++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 74 RGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 56899999999999999999999875
No 59
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.85 E-value=8.8e-09 Score=94.48 Aligned_cols=91 Identities=18% Similarity=0.308 Sum_probs=72.3
Q ss_pred ecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecC-CCCceEEEec
Q 004508 21 SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS-NHNDQLKLGA 99 (748)
Q Consensus 21 ~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~-~~~~~~~~~a 99 (748)
..++..-=+++|||+|+|+.|+|||++...+ ..|+..+-+-||....|.-.. . .-|.+++-... ++.+.+.|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~lnl~gcev~~dv~~~---~-~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLNLKGCEVTPDVNVA---Q-QKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEecCceEEccccccc---c-cceEEEEecCCccCCeEEEEEC
Confidence 3445555589999999999999999877654 789999999999655563111 1 24899998764 6668999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004508 100 SSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 100 ~s~eea~~W~~a~~~a~ 116 (748)
.|.++-++||.|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999993
No 60
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.83 E-value=3.2e-08 Score=93.55 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=98.0
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004508 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (748)
Q Consensus 207 KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyv 286 (748)
+....|+||+++|+++|.|.+ ..++|.+.+.++++++.-+ +...++... .++...|+|+....+. .+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~~~~~~vl~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPWCTASRVLERDE-DELEAELTV-----GFGGIRESFTSRVTLV--PPES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCCccccEEEEcCC-CEEEEEEEE-----eeccccEEEEEEEEec--CCCE--
Confidence 346679999999999999999 7999999999999999755 444556554 2245678888654443 3333
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHH
Q 004508 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
|...++.. +.....|.|.++|++++ +|+|+|.++.+++|.+|.|+ +.+....+..+ +.+|++.+.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~---l~~f~~~~~ 136 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKM---VDAFEKRAK 136 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 34455532 23345689999999865 79999999999999999984 45556666666 666666554
No 61
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.79 E-value=2.3e-08 Score=85.28 Aligned_cols=95 Identities=24% Similarity=0.325 Sum_probs=74.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEec-CCccccccceeEEEEEEecCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d-~g~~~~~~~~~yvf~i~~~~~ 90 (748)
++|||+++.... .+-|++|||+|.++.|.+|+..+......|.+.+.|+++ .|.. .+.+ +.-+.|.|....+
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~----~~~~~f~i~~~~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGA-EVEESPDDS----GRKNCFEIRTPDG 73 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCC-EEEECCCcC----CCCcEEEEecCCC
Confidence 589999988654 456889999999999999996654334688888899875 4443 2221 2468888887643
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHH
Q 004508 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
+.+.|.|.|.+|+.+|+.+|+.|
T Consensus 74 --~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 --RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred --cEEEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.63 E-value=6.7e-07 Score=84.67 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=85.9
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004508 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (748)
Q Consensus 207 KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyv 286 (748)
+++..|+|||+.|+++|.|.+ ..++|.+.+.++++++.-++ ...+|+......+.+.. +.-+.++.... ++....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYD-NLAEFIPNLAESRLLERNGN-RVVLEQTGKQGILFFKF--EARVVLELRER-EEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChh-hHHhhCcCceEEEEEEcCCC-EEEEEEeeeEEEEeeee--eEEEEEEEEEe-cCCCce
Confidence 678899999999999999999 69999999999999987433 33344321100000000 01111111111 110111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHHHH
Q 004508 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
+.+..+. |-+ ....|.|.++|.+++.+|+|+|.++++|++.+|.|+ +.+....+. ..+++||+.++
T Consensus 77 i~~~~~~--------g~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~---~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVE--------GDF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLP---TNLLAIRAEAE 143 (144)
T ss_pred EEEEEcC--------Cch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 2222221 101 344689999999763379999999999999999873 333333444 44888887764
No 63
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.49 E-value=9.6e-07 Score=80.60 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=68.3
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC-CCCCceEEEeecceEEecCCccccccceeEEEEEEecC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
.+||||.|..++ +. ++|||+|=...|=|+.+.+.++ --.+-+.+-+++. .|++.--+ .+..+.|.||.+
T Consensus 3 ikEG~L~K~~~k--~~---~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~-~V~~~~~~---~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKK--GL---QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGM-LTEESEHE---WGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCC--CC---ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCce-EEeeccCC---cCCceeEEEEcC-
Confidence 479999998874 33 3666666666666666566432 1246677777866 67653111 245789999954
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 90 NHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
.+.+.|.|.|++|...||++|+.||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999986
No 64
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.49 E-value=2.3e-07 Score=82.90 Aligned_cols=84 Identities=31% Similarity=0.485 Sum_probs=57.9
Q ss_pred eeEEEeeecccccccceeeEEEE--ecceeeeeccCCCC--CCCCCceEEEeecceEEecCCccccccceeEEEEEEecC
Q 004508 14 GWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFKSVPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 14 Gwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~yk~~p~~--~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
|||.|+++++ +|=|++||||| +.-.|.||+..... .+..||+.++|.-+ ...+ .+-+ +
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~----~~~~------~I~i----d-- 62 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN----KKSR------RIDI----D-- 62 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec----CCCC------EEEE----E--
Confidence 8999987764 34478999999 99999999944321 23566666665322 1112 1211 1
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
.+...+.|=|.|.+|...|+.||+.|
T Consensus 63 sg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 63 SGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 23446677799999999999999987
No 65
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.45 E-value=1.6e-06 Score=81.43 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=73.8
Q ss_pred ceeeEEEeee-------cccccccceeeEEEEecceeeeeccCCCCC---C-CCCceEEEeecce-EEecCCccccccce
Q 004508 12 MEGWLHLIRS-------NRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---N-EDPVRSAIIDSCI-RVTDNGRESIHRKV 79 (748)
Q Consensus 12 ~eGwl~~~g~-------~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~-~~Pi~~~vid~~~-~V~d~g~~~~~~~~ 79 (748)
+||+|+++-. ...|..+|++||-||+|+.|..||...... . ..+-..+-|.+++ .+.-. ..+.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~d-----y~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASD-----YSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeecc-----ccCC
Confidence 6899998742 234678899999999999999999664310 0 1223455677775 55522 2245
Q ss_pred eEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 80 FFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 80 ~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
-+||+|-.. +.+.+-|-|.+.||+.+|+.+|..|++
T Consensus 77 ~~VF~L~~~--~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTA--DWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 788888764 678999999999999999999999876
No 66
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.40 E-value=8.2e-06 Score=82.49 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=93.3
Q ss_pred cCcHHHHHHHHHhC-CCCccccccccceeEEEEee----------cCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcC
Q 004508 213 DGTSEAIFQTLMSL-GASRSVWDFCFYRGCVVEHL----------DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED 281 (748)
Q Consensus 213 ~aspe~VfevL~d~-d~~R~eWD~~~~e~~VVE~i----------d~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~ 281 (748)
.++-+++.+.|.+- .++-+++.+.+...+.|+.. ++...|++..+ .+|+|+++|||+.+-......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~---kfp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSY---KFPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEe---ECCCCCCCcEEEEEEEEeccC
Confidence 67778888777642 11457889999999999988 45556666665 578999999999997766533
Q ss_pred ---------CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC------CCCCeeEEEEEEeeeCCCCccCcc
Q 004508 282 ---------DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM------NHGKKSVVKHMLAIDWKCWRSYLQ 342 (748)
Q Consensus 282 ---------dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl------~~g~~~~VTyi~~vDpkGwiP~~~ 342 (748)
..+++|++..++|+.+|+.+|+|||.-. +-=.|+-+ ++...-.=++.+..|+||+||.|+
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHH
Confidence 2359999999999999999999999654 54455555 222234444555679999999994
No 67
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.36 E-value=1.2e-05 Score=74.99 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=86.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCc-eEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCc
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH-TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~-tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGs 284 (748)
+.....|+|||++|+++|.|.+ ..++|.+.+.++++++.-++. ....+..+. ..++.. +++.- +. .....
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~-~~-~~~~~- 74 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVE-AYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKD-TYALE-YT-WDGAG- 74 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChh-hhhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEE-EEEEE-EE-EcCCC-
Confidence 5567789999999999999999 799999999999998654332 234444431 112222 34322 21 11222
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCcc-ccchhHHHHHHHHHHHHHHHH
Q 004508 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALREL 363 (748)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~-~~~~~~i~~~mL~~va~LRe~ 363 (748)
.|.+..+... +.....+.|.++|.++ .|+|+|.++.+++|++|.|+ +.+.+.++.. .+.+||++
T Consensus 75 -~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ 139 (140)
T cd07819 75 -SVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLDE---ALKGLKKR 139 (140)
T ss_pred -cEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHHH---HHHhHhhh
Confidence 2344443221 3334457899999976 59999999999999999884 3333444444 47777765
No 68
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.05 E-value=5.8e-05 Score=70.76 Aligned_cols=140 Identities=8% Similarity=-0.128 Sum_probs=84.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsy 285 (748)
+++...+++||++|+++|.|.+ ...+|.+.+...++++ ++...++.+.+. ++...|.-...++....++..+
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPGCESLEKIG---PNEYEATVKLKV----GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccchhhccccC---CCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcEE
Confidence 6778889999999999999999 7999999988866553 444445555421 3444444333333333233444
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHH-HHHHHHHHHHH
Q 004508 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRM-LGRVAALRELF 364 (748)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~m-L~~va~LRe~~ 364 (748)
.+...... + .+.....+.|.|+|.+ + .|+|+|..+++++|.+......+......++ -..+.+||+.+
T Consensus 75 ~~~~~~~~-~--------~~~~~~~~~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEGKG-G--------AGFVKGTARVTLEPDG-G-GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEcC-C--------CceEEEEEEEEEEecC-C-cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44433211 1 1223446799999984 3 6999999999999976322222222222222 23466666653
No 69
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.88 E-value=0.00029 Score=66.48 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=80.9
Q ss_pred EEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEE--EEEEcCCCcEE
Q 004508 209 VGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRR--YWRREDDGTYV 286 (748)
Q Consensus 209 vgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR--~wrr~~dGsyv 286 (748)
..+|+||+++||++|.|++ ..++|.+. ...++++. ++....++.. .+..++..+.. .+..+..+..
T Consensus 4 s~~i~ap~~~V~~~l~D~~-~~p~~~p~-~~~~~~~~-~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~- 71 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAE-RWPEFLPT-VHVERLEL-DGGVERLRMW--------ATAFDGSVHTWTSRRVLDPEGRR- 71 (142)
T ss_pred EEEEcCCHHHHHHHHHhHH-hhhccCCC-ceEEEEEE-cCCEEEEEEE--------EEcCCCcEEEEEEEEEEcCCCCE-
Confidence 5689999999999999999 68899998 77777765 3444344421 22223333221 1112232332
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHH
Q 004508 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
|.+..+.-+ + +.....|.|.++|.+++ +|+|+|.+..++++.+|--.......+...+-..+++||++++
T Consensus 72 i~~~~~~~~------~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 72 IVFRQEEPP------P--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred EEEEEeeCC------C--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 333333110 1 12234579999999855 6999999999999987721111222222234445777877754
No 70
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.86 E-value=0.00031 Score=65.32 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=77.2
Q ss_pred ecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEe
Q 004508 212 VDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHS 291 (748)
Q Consensus 212 V~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~S 291 (748)
|+||+++|++++.|.+ ..++|.+.+.++++++.-+++..+ .... ......+.|+....... ... +....
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~~~~v~vl~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~--~~~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPPVKEVRVLERDGDGMRA-RWEV-----KFGGIKRSWTSRVTEDP--PER--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTTEEEEEEEEEECCEEEE-EEEE-----CTTTTCEEEEEEEEEEC--TTT--EEEES
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeCCCeEEE-EEEE-----ecCCEEEEEEEEEEEEE--eee--eeeee
Confidence 6899999999999999 799999999999999987664433 3333 12334456655443332 233 33332
Q ss_pred cCCCCCCCCCCeEEEEEeceEEEEEeCCC---CCeeEEEEEEeeeCCCCccCc
Q 004508 292 VFHKKCPRQKGSVRACLKSGGYVITPMNH---GKKSVVKHMLAIDWKCWRSYL 341 (748)
Q Consensus 292 V~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~---g~~~~VTyi~~vDpkGwiP~~ 341 (748)
+ .|- .....|.|.++|.++ +.+|.|++.+.+++++++|.+
T Consensus 70 ~--------~g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~ 112 (130)
T PF03364_consen 70 I--------SGP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGF 112 (130)
T ss_dssp S--------ETT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHH
T ss_pred c--------CCC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHH
Confidence 2 121 234468999999986 778999999999999999986
No 71
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.76 E-value=4.8e-05 Score=69.38 Aligned_cols=92 Identities=22% Similarity=0.380 Sum_probs=66.1
Q ss_pred cceeeEEEeeecccccccceeeEEEEecce-----eeeeccCCCCCCCCCceEEEeecceEEecCCcccc----------
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHF-----LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI---------- 75 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~-----l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~---------- 75 (748)
.++|||++.|.+.. -=|++|||||.|-- +-.|+.|. .+|-..+.|||. +|.- .+..
T Consensus 3 k~sGyL~k~Gg~~~--KkWKKRwFvL~qvsQYtfamcsy~ekk----s~P~e~~qldGy-TvDy--~~~~~~~~~~~~~~ 73 (117)
T cd01234 3 KHCGYLYAIGKNVW--KKWKKRFFVLVQVSQYTFAMCSYREKK----AEPTEFIQLDGY-TVDY--MPESDPDPNSELSL 73 (117)
T ss_pred ceeEEEEeccchhh--hhhheeEEEEEchhHHHHHHHhhhhhc----CCchhheeecce-EEec--cCCCCCCccccccc
Confidence 38999999998433 34899999999642 33455555 567777889998 5542 1222
Q ss_pred ccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 76 HRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 76 ~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
+|+.+| +|.-...+.++||+....|---|++|+=.|
T Consensus 74 ~gg~~f----f~avkegd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 74 QGGRHF----FNAVKEGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred ccchhh----hheeccCcEEEEeccchHHHHHHHHHHHHH
Confidence 233332 344578899999999999999999999998
No 72
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.74 E-value=0.00018 Score=67.64 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=60.8
Q ss_pred ceeeEEEeee-----ccc--ccccceeeEEEEecceeeeeccCC--CC---------CCCCCceEEEeecceEEecCCcc
Q 004508 12 MEGWLHLIRS-----NRI--GLQYSRKRYFLLEDHFLKSFKSVP--HS---------KNEDPVRSAIIDSCIRVTDNGRE 73 (748)
Q Consensus 12 ~eGwl~~~g~-----~~~--g~~~~~~Ryfvl~g~~l~~yk~~p--~~---------~~~~Pi~~~vid~~~~V~d~g~~ 73 (748)
+||||+++-. .+. +..-|+.=|.||+|..|.+||... .. +...|+.++-|.+++--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY- 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY- 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB-
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc-
Confidence 6999999632 223 555699999999999999999632 11 1135677788887752222221
Q ss_pred ccccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 74 SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 74 ~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
.+.-+||+|- .....++-|-|.|.|||..|+.+|..++
T Consensus 81 ---~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 ---TKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp ---TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ---ccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 2356788885 4578899999999999999999998875
No 73
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.60 E-value=8.1e-05 Score=80.32 Aligned_cols=99 Identities=28% Similarity=0.456 Sum_probs=68.4
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEe--cceeeeeccCCCCC--CCCCceEEEeecc-eEEecCCccccccceeEEE
Q 004508 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKSFKSVPHSK--NEDPVRSAIIDSC-IRVTDNGRESIHRKVFFIF 83 (748)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~--g~~l~~yk~~p~~~--~~~Pi~~~vid~~-~~V~d~g~~~~~~~~~yvf 83 (748)
.+.+||||.|+|+.-.. ||.|||+|. |.++- |+.||.+. ...|+---.|-.| ++-.|+-|-. ++-+=
T Consensus 14 ~vvkEgWlhKrGE~Ikn---WRpRYF~l~~DG~~~G-yr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPn----tFiiR 85 (516)
T KOG0690|consen 14 DVVKEGWLHKRGEHIKN---WRPRYFLLFNDGTLLG-YRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPN----TFIIR 85 (516)
T ss_pred hhHHhhhHhhcchhhhc---ccceEEEEeeCCceEe-eccCCccCCCCcccccchhhhhhhhhhccCCCCc----eEEEE
Confidence 45599999999997444 999999996 66664 56689863 3688887777444 3555654322 33333
Q ss_pred EEEecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
++-...--. -+|.+.|++|-..|++|++..+.
T Consensus 86 cLQWTTVIE--RTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 86 CLQWTTVIE--RTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeee--eeeecCCHHHHHHHHHHHHHHhh
Confidence 333332112 26889999999999999998764
No 74
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.60 E-value=0.0025 Score=58.99 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=81.4
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCc
Q 004508 205 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (748)
Q Consensus 205 ~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGs 284 (748)
.++....|+||+++||++|.|.+ ...+|.+.+...++++.-++--.+....+ +.. +.+. .+.... ++..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~-----~~g---~~~~-~~i~~~-~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASCELEGGGPGVGAVRTVTL-----KDG---GTVR-ERLLAL-DDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccCcceEEeecCCCCCCeEEEEEe-----CCC---CEEE-EEehhc-CccC
Confidence 36778899999999999999998 68899999888887654220111222222 111 1221 112111 2331
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHH
Q 004508 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (748)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~ 364 (748)
..+.+..+.- ..| .....+.|.++|.+++ +|+|+|.++.+++|.++.+. ....+-..+-..+++|++++
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDEL--ARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCCC-ccEEEEEEEEecCCCcchHH--HHHHHHHHHHHHHHHHHHhh
Confidence 2333333321 011 1233578999999764 69999999999998876641 12222222335577888775
No 75
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.56 E-value=0.0029 Score=58.97 Aligned_cols=135 Identities=8% Similarity=-0.049 Sum_probs=82.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsy 285 (748)
+.....|+||+++||+++.|.+ ..++|.+.+.+++++.. .... +.+ ..|+ ...+++.... .. ...+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~~~~~~~~~~--~~~~---~~~---~~~~-g~~~~~~~~v-~~-~~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSHVESVEQLDD--TRSH---WKA---KGPA-GLSVEWDAEI-TE-QVPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhhhcEEEEcCC--CceE---EEE---ecCC-CCcEEEEEEE-ec-cCCCCE
Confidence 3567789999999999999999 79999999988877642 1221 222 1233 4445664432 22 233333
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCcc-ccchhHHHHH-HHHHHHHHHHH
Q 004508 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIR-MLGRVAALREL 363 (748)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~-~~~~~~i~~~-mL~~va~LRe~ 363 (748)
|.......+. ...+.|.++|.+++ +|+|+|.++.++.+.++..+ ..+...+..+ +-..+++||++
T Consensus 70 -i~~~~~~~~~-----------~~~~~~~f~~~~~~-~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 70 -IAWRSVEGAD-----------PNAGSVRFRPAPGR-GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred -EEEEECCCCC-----------CcceEEEEEECCCC-CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3334432211 12477889998754 79999999999998777531 2122222222 33556777766
Q ss_pred HH
Q 004508 364 FR 365 (748)
Q Consensus 364 ~~ 365 (748)
++
T Consensus 137 aE 138 (139)
T cd07817 137 VE 138 (139)
T ss_pred hh
Confidence 53
No 76
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.45 E-value=0.0014 Score=62.15 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=68.5
Q ss_pred eeeEEEeeecc--cccccceeeEEEEec--ceeeeeccCCCC-CC-CCCceEEEeecceEEecCCcccc--ccc-eeEEE
Q 004508 13 EGWLHLIRSNR--IGLQYSRKRYFLLED--HFLKSFKSVPHS-KN-EDPVRSAIIDSCIRVTDNGRESI--HRK-VFFIF 83 (748)
Q Consensus 13 eGwl~~~g~~~--~g~~~~~~Ryfvl~g--~~l~~yk~~p~~-~~-~~Pi~~~vid~~~~V~d~g~~~~--~~~-~~yvf 83 (748)
-.||||+.++. .+..=.|+|||-|.. ..|.....+|.. +. ..=.+++.|+.=..|.|+-.... +.. --|+|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 35999998876 112347899999999 677777777753 11 23456677776667766522110 001 22444
Q ss_pred EEEecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
.|. ...|.++|.|.|.|+++-|+.||+..++
T Consensus 92 ~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 92 IIV---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEE---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 444 4578999999999999999999998754
No 77
>PRK10724 hypothetical protein; Provisional
Probab=97.44 E-value=0.0042 Score=61.42 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=89.0
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCC
Q 004508 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD 282 (748)
Q Consensus 203 ~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~d 282 (748)
.+.++...+|++|++++|+++.|++ ..++|-+.+.+++++++-++.. +..... .+ . .+ ..-|.....+. .+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~~~~s~vl~~~~~~~-~a~l~v--~~-~-g~-~~~f~srv~~~--~~ 84 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQ-SYPQFLPGCTGSRVLESTPGQM-TAAVDV--SK-A-GI-SKTFTTRNQLT--SN 84 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHH-HHHHhCcccCeEEEEEecCCEE-EEEEEE--ee-C-Cc-cEEEEEEEEec--CC
Confidence 4578888999999999999999999 7999999999999999865542 222222 01 1 12 33454444442 33
Q ss_pred CcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCc-cccchhHHHHHHHHHHHHHH
Q 004508 283 GTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALR 361 (748)
Q Consensus 283 GsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~-~~~~~~~i~~~mL~~va~LR 361 (748)
+ -|....++.| . ....|.|.++|++++ .|+|++.++.+++-.+++. ...+-..++..| +.+++
T Consensus 85 ~--~I~~~~~~Gp--------F--~~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~m---v~AF~ 148 (158)
T PRK10724 85 Q--SILMQLVDGP--------F--KKLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIELAFGRVFKELASNM---VQAFT 148 (158)
T ss_pred C--EEEEEecCCC--------h--hhccceEEEEECCCC-CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3 2444554321 1 235689999999754 6999999999988877763 223333444444 44444
Q ss_pred HHH
Q 004508 362 ELF 364 (748)
Q Consensus 362 e~~ 364 (748)
+..
T Consensus 149 ~Ra 151 (158)
T PRK10724 149 VRA 151 (158)
T ss_pred HHH
Confidence 443
No 78
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.41 E-value=0.0068 Score=58.98 Aligned_cols=139 Identities=11% Similarity=0.076 Sum_probs=83.2
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEE-EcCCCcEE
Q 004508 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWR-REDDGTYV 286 (748)
Q Consensus 208 avgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wr-r~~dGsyv 286 (748)
-..+|++||+.||+++.|++ ..++|.+.+..+++++. ++.....-... |.+ .. .++.--..+ ..+...+.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~-~~P~~~~~~~~~~~l~~-~~~~~~~r~~i---~~~--~~--g~~~~w~s~~~~~~~~~~ 75 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIA-TWPDLFSEYAEAEVLEE-DGDTVRFRLTM---HPD--AN--GTVWSWVSERTLDPVNRT 75 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhh-hhhhhccceEEEEEEEe-cCCeEEEEEEE---Eec--cC--CEEEEEEEEEEecCCCcE
Confidence 35689999999999999999 79999999999999985 44444433332 111 11 122111112 22333444
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHHh
Q 004508 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
|.+..+ +.-| - ....+.|.++|++++ |+|+|......++-.|.-...+.+.+-..+-..+++||+.+++
T Consensus 76 i~~~~~--~~~p-~------~~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 76 VRARRV--ETGP-F------AYMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred EEEEEe--cCCC-c------ceeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 555422 2222 1 134579999999764 9999999988764233211112222222344558888887765
No 79
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.40 E-value=0.00043 Score=64.28 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=72.1
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeec-ceEEecCCccccccceeEEEEEEecC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~-~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
+.|||||.+..-+.+ |++|||||++.=|+|.-+-...+.+.-..-+.+++ ++=..-+|++.+..+.-|.|+|--..
T Consensus 1 e~~g~LylK~~gkKs---WKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYLKADGKKS---WKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEEccCCCcc---ceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 369999997654444 99999999999998876433222233334444443 33333467899999999999994433
Q ss_pred C---CCceE-EEecCCHHHHHHHHHHHHHHH
Q 004508 90 N---HNDQL-KLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 90 ~---~~~~~-~~~a~s~eea~~W~~a~~~a~ 116 (748)
. .++-+ .|.|++.+....|+-||+-|.
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 2 24555 467788888899999999885
No 80
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.32 E-value=0.0021 Score=60.47 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=74.0
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC---CCCCceEEEe-ecceEEecCC----ccccccceeE
Q 004508 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---NEDPVRSAII-DSCIRVTDNG----RESIHRKVFF 81 (748)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~~~Pi~~~vi-d~~~~V~d~g----~~~~~~~~~y 81 (748)
..|||||-.-..+++.+. |.++|.||.+.-|+.|....... ..+|.-++-+ |+-+-|.--. ...-.....|
T Consensus 2 t~~EGwvkvP~~~~~krG-W~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKG-WQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccC-ceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 469999987766665554 88999999999999999555321 1345444555 5665553221 1222345689
Q ss_pred EEEEEe----cCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 82 IFTLYN----TSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 82 vf~i~~----~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
+|+|-. ..-....+-|-|.|..|-.+|..||++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 999965 3334577889999999999999999975
No 81
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.28 E-value=5.1e-05 Score=86.51 Aligned_cols=90 Identities=27% Similarity=0.303 Sum_probs=76.2
Q ss_pred CCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccc
Q 004508 264 WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQP 343 (748)
Q Consensus 264 ~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~ 343 (748)
.|...|||+++| |.++++..|++|...+...| |||.+..+.|+|+|++.| +++|+|++.+|++|..|.|++
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 467899999998 78999999999988888888 999999999999999887 789999999999999999976
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHh
Q 004508 344 -SSARSITIRMLGRVAALRELFRA 366 (748)
Q Consensus 344 -~~~~~i~~~mL~~va~LRe~~~~ 366 (748)
.|...+... ++.+|+.|..
T Consensus 645 k~fg~~c~~~----~~~~r~sf~~ 664 (674)
T KOG2200|consen 645 KSFGHLCCLE----VARIRDSFHT 664 (674)
T ss_pred ccccchhhhh----hcccchhhcc
Confidence 455544444 5667776654
No 82
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.12 E-value=0.046 Score=50.53 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=76.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsy 285 (748)
+..+..|+|||++||++|.|.. ...+|.+.+...+++.. +...+. ..+.. .+. .-+..+....++++..
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~~~~~~~~~~--~~~~~~-~~~~~---~g~----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPE-NWPRWWPGVKSVELLSG--GGPGTE-RTVRV---AGR----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTT-GGGGTSTTEEEEEEEEE--CSTEEE-EEEEE---CSC----SEEEEEEEEEETTTTE
T ss_pred EEEEEEECCCHHHHHHHHhChh-hhhhhhhceEEEEEccc--ccccee-EEEEe---ccc----cceeEEEEEecCCCcE
Confidence 4566789999999999999998 68899999998887762 222221 22211 111 2233333333332443
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCcc--ccchhHHHHHHHHHHHHHHHH
Q 004508 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ--PSSARSITIRMLGRVAALREL 363 (748)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~--~~~~~~i~~~mL~~va~LRe~ 363 (748)
+-. +.+ ..++.. ..+.|.+.|.+++ |.|++..+.++ | ++.++ ..+...+...+-..+++|++.
T Consensus 73 ~~~-~~~-------~~~~~~---~~~~~~~~~~~~g--t~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 137 (139)
T PF10604_consen 73 ITW-RFV-------PSGFTN---GTGRWRFEPVGDG--TRVTWTVEFEP-G-LPGWLAGPLLRPAVKRIVREALENLKRA 137 (139)
T ss_dssp EEE-EEE-------SSSSCE---EEEEEEEEEETTT--EEEEEEEEEEE-S-CTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-EEE-------ecceeE---EEEEEEEEEcCCC--EEEEEEEEEEE-e-ccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 332 222 122222 2568999999865 99999999998 3 33332 112222222333557777766
Q ss_pred H
Q 004508 364 F 364 (748)
Q Consensus 364 ~ 364 (748)
+
T Consensus 138 ~ 138 (139)
T PF10604_consen 138 A 138 (139)
T ss_dssp H
T ss_pred c
Confidence 5
No 83
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.08 E-value=0.0026 Score=59.43 Aligned_cols=95 Identities=15% Similarity=0.338 Sum_probs=62.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEec-CCccccccceeEEEEEEecCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d-~g~~~~~~~~~yvf~i~~~~~ 90 (748)
+||||.|+-..-.. ++|+|++|+.|.+.||+..- +..|.|.+-|--=+.|+. +|--...+..-|.|.|--
T Consensus 2 kEGWmVHyT~~d~~---rKRhYWrLDsK~Itlf~~e~---~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T--- 72 (117)
T cd01239 2 KEGWMVHYTSSDNR---RKKHYWRLDSKAITLYQEES---GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT--- 72 (117)
T ss_pred ccceEEEEecCccc---eeeeEEEecCCeEEEEEcCC---CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe---
Confidence 79999998764433 67999999999999999654 356666666654556653 222122345667777732
Q ss_pred CCceEEE--------------------ecCCHHHHHHHHHHHHHH
Q 004508 91 HNDQLKL--------------------GASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 91 ~~~~~~~--------------------~a~s~eea~~W~~a~~~a 115 (748)
.+..|-+ .....+-|..|-.||++|
T Consensus 73 ~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 73 TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 1222222 234567789999999886
No 84
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.95 E-value=0.0089 Score=55.61 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=69.4
Q ss_pred cceeeEEEeeeccc-ccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCC----ccccccceeEEEEE
Q 004508 11 RMEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG----RESIHRKVFFIFTL 85 (748)
Q Consensus 11 ~~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g----~~~~~~~~~yvf~i 85 (748)
.|||||-.-..++. +.+=|.++|.||.+.-|+.|....+..+..|.-.+=+|.-+-|.--. ...-.....|+|+|
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred CcceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 38999987666444 22338899999999999999955443224455433332211211100 11222356799999
Q ss_pred EecCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 86 ~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
-.. +.++.+-|-|.|.+|-.+|..||..-|
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 665 457999999999999999999998654
No 85
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.80 E-value=0.021 Score=53.28 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=68.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCC-CceEEEeecceEEecC--Cccc-cccceeEEEEEEe
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNED-PVRSAIIDSCIRVTDN--GRES-IHRKVFFIFTLYN 87 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~-Pi~~~vid~~~~V~d~--g~~~-~~~~~~yvf~i~~ 87 (748)
++|=|.++..++.-. +.|+|.|=.++|=|=|++-...+.- =-+.+.++.+ +|.|. |++. .+...-+.|.||+
T Consensus 4 ~~Gel~~~s~~~g~~---q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~-~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQNKGWN---SSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRC-EVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEecccCCc---ccEEEEEecceEEEEecccccCCcEEEEEEEEcccE-EEEECCCCccccCCceeEEEEEEEE
Confidence 677777776543333 3899999888888888543221222 2234445755 66644 5543 2345788999999
Q ss_pred cCCCCceEEEecCCHHHHHHHHHHHHH
Q 004508 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
. ..+..+.|.|.|+|+-.+||+||+.
T Consensus 80 ~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 E-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred c-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 9 4677899999999999999999975
No 86
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=96.79 E-value=0.00072 Score=80.69 Aligned_cols=92 Identities=23% Similarity=0.364 Sum_probs=68.1
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeccCCCCCCCCCceEEEeecc--eEEecCCccccccceeEEEEEEe
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSC--IRVTDNGRESIHRKVFFIFTLYN 87 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~Pi~~~vid~~--~~V~d~g~~~~~~~~~yvf~i~~ 87 (748)
+||+|||+|.--.+ |+.|||||.. ..|+||+..- +..|- |+||-- --|+-.|-+++-.+.+|-++
T Consensus 1636 ~eG~LyKrGA~lK~---Wk~RwFVLd~~khqlrYYd~~e---dt~pk--G~IdLaevesv~~~~~k~vdekgffdlk--- 1704 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKLKL---WKPRWFVLDPDKHQLRYYDDFE---DTKPK--GCIDLAEVESVALIGPKTVDEKGFFDLK--- 1704 (1732)
T ss_pred cccchhhcchhhcc---cccceeEecCCccceeeecccc---ccccc--chhhhhhhhhhcccCccccCccceeeee---
Confidence 89999999996555 8999999975 6899999444 35564 333311 02333455777777676543
Q ss_pred cCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
..++.|.|.|.|+-+|-+|++.++..+
T Consensus 1705 --tt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1705 --TTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred --hhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 567788999999999999999999864
No 87
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.67 E-value=0.017 Score=53.40 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=63.1
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~ 90 (748)
.+||=|.++-+ .+.+ .|||+|=...|=|=+..+..+.-..-+.+-++++ .|++..- .......|.|.++
T Consensus 5 i~eG~L~K~~r--k~~~---~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~-~v~~~~d---~~~~~n~f~I~~~-- 73 (104)
T cd01218 5 VGEGVLTKMCR--KKPK---QRQFFLFNDILVYGNIVISKKKYNKQHILPLEGV-QVESIED---DGIERNGWIIKTP-- 73 (104)
T ss_pred EecCcEEEeec--CCCc---eEEEEEecCEEEEEEeecCCceeeEeeEEEccce-EEEecCC---cccccceEEEecC--
Confidence 47999998773 4544 7899999998888443222110011112233544 4443210 1134578888885
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 91 HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
.+...+.|.|++|-..||++|++|+++
T Consensus 74 -~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 -TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999985
No 88
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.67 E-value=0.051 Score=50.07 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=72.7
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeec--CceEEEEEEEccCCCCCCCCCceEE-EEEEEEEcCCCc
Q 004508 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD--GHTDIIHKQLYSDWLPWGMKRRDLL-LRRYWRREDDGT 284 (748)
Q Consensus 208 avgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id--~~tdIvY~~~~~~~lP~pvs~RDfV-~lR~wrr~~dGs 284 (748)
....|+||+++|+++|.|.+ ...+|++.+..++.+..-. ..+ .+..... ++ . ..+- ..+.... +.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~~~~~~g~-~~~~~~~---~~-g---~~~~~~~~v~~~-~p~~ 72 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFE-NAPEWDPGVVEVEKITDGPVGVGT-RYHQVRK---FL-G---RRIELTYEITEY-EPGR 72 (140)
T ss_pred eEEEEcCCHHHHHHHHHCcc-chhhhccCceEEEEcCCCCCcCcc-EEEEEEE---ec-C---ceEEEEEEEEEe-cCCc
Confidence 45679999999999999998 6899999887777664211 111 1222221 01 1 1111 1112222 2333
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHH-HHHHHHHHHHHH
Q 004508 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITI-RMLGRVAALREL 363 (748)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~-~mL~~va~LRe~ 363 (748)
++. ..... +.++ ..+-|.+.|.++ .|.|+|....+++++.+-. ..+...... .+-..+++|++.
T Consensus 73 ~~~-~~~~~--------~~~~---~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~ 137 (140)
T cd08865 73 RVV-FRGSS--------GPFP---YEDTYTFEPVGG--GTRVRYTAELEPGGFARLL-DPLMAPAFRRRARAALENLKAL 137 (140)
T ss_pred EEE-EEecC--------CCcc---eEEEEEEEEcCC--ceEEEEEEEEccchhHHHH-HHHHHHHHhhhhHHHHHHHHHH
Confidence 322 22221 1122 246899999875 5999999999987754321 112222222 233456666666
Q ss_pred HH
Q 004508 364 FR 365 (748)
Q Consensus 364 ~~ 365 (748)
++
T Consensus 138 ~e 139 (140)
T cd08865 138 LE 139 (140)
T ss_pred hh
Confidence 54
No 89
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.63 E-value=0.0037 Score=74.88 Aligned_cols=109 Identities=17% Similarity=0.366 Sum_probs=81.0
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCC-CCCCCceEEEeecce--EEecCCccccccc-eeEE
Q 004508 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCI--RVTDNGRESIHRK-VFFI 82 (748)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vid~~~--~V~d~g~~~~~~~-~~yv 82 (748)
...+.|-|+|+..-.. =|.-=||+||-+|.|+...|+| .|+| ..+.||+.+=|-.|| .||.- ++-+.++ .-|-
T Consensus 987 ~idVEYrGFLtmfed~-sgfGaWhRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a-~rdicar~ntFh 1063 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDG-SGFGAWHRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEA-RRDICARPNTFH 1063 (1116)
T ss_pred ccceeeeeeeeeeecc-CCCchhhhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccc-hhhhccCCceeE
Confidence 3456799999999854 5666699999999999999999 8877 568999999999998 45543 3333333 2333
Q ss_pred EEEEecCCC--------Cc-eEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 83 FTLYNTSNH--------ND-QLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 83 f~i~~~~~~--------~~-~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
+.++-++.. -| +..|||.+.||-..|+.+|-.+..+
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 333333321 13 7889999999999999999998664
No 90
>PLN02866 phospholipase D
Probab=96.62 E-value=0.01 Score=72.88 Aligned_cols=99 Identities=20% Similarity=0.417 Sum_probs=71.8
Q ss_pred ceeeEEEe------e-ecccc-c---------ccceeeEEEEecceeeeeccCCCCCCCCCceEEEeec----------c
Q 004508 12 MEGWLHLI------R-SNRIG-L---------QYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS----------C 64 (748)
Q Consensus 12 ~eGwl~~~------g-~~~~g-~---------~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~----------~ 64 (748)
+||++.++ | ..+.+ . .-|.||||||+...|.|.+ +|.+ ..|+-.+++|- .
T Consensus 184 ~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~-~p~~--~~~~~v~lfD~~~~~~~~~~~~ 260 (1068)
T PLN02866 184 KEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLE-DPFD--AKPLDIIVFDVLPASNGNGEGQ 260 (1068)
T ss_pred ceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEe-cCCC--CceeEEEEEecccccccCCCcc
Confidence 89999998 2 12221 1 1278899999999999998 7866 66999999993 2
Q ss_pred eEEecCCccccccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 65 IRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 65 ~~V~d~g~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
+.+.....|+ ...-|.|+|-| .+|+++|=|.|..+|..|+.|++.|..+
T Consensus 261 ~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 261 ISLAKEIKER--NPLRFGFKVTC---GNRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred eeeccccccc--CCCcceEEEec---CceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 2332222122 23456777754 5788999999999999999999999753
No 91
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.47 E-value=0.024 Score=53.13 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=65.1
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCC--------ce-EEEeecceEEecCCccccccceeE
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDP--------VR-SAIIDSCIRVTDNGRESIHRKVFF 81 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P--------i~-~~vid~~~~V~d~g~~~~~~~~~y 81 (748)
.+||=|.++...+--. +.|||+|=.++|=|=|++.... ..| ++ ...++. +.|.|..- +...-+
T Consensus 5 I~EG~L~ki~~~~~~~---q~R~~FLFd~~Li~CK~~~~~~-~~~g~~~~~y~~k~~~~l~~-~~V~d~~d---~~~~kn 76 (112)
T cd01261 5 IMEGTLTRVGPSKKAK---HERHVFLFDGLMVLCKSNHGQP-RLPGASSAEYRLKEKFFMRK-VDINDKPD---SSEYKN 76 (112)
T ss_pred cccCcEEEEecccCCc---ceEEEEEecCeEEEEEeccCcc-cccccccceEEEEEEEeeee-eEEEEcCC---CcccCc
Confidence 4899999998765333 4899999999998888654311 111 00 122232 24443210 123467
Q ss_pred EEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
.|.|.++. .+.+.|.|.|+||-.+||++|..|+.
T Consensus 77 aF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 77 AFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred eEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 89998763 46899999999999999999999865
No 92
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.45 E-value=0.13 Score=49.16 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=64.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEe-ecCceEEEE-EEEccCCCCCCCCCceEEEE-EEEEEcCC
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH-LDGHTDIIH-KQLYSDWLPWGMKRRDLLLR-RYWRREDD 282 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~-id~~tdIvY-~~~~~~~lP~pvs~RDfV~l-R~wrr~~d 282 (748)
|--...|+|||++||+++.|.+ ..++|.+.+.++++++. -+...-..+ +.... ..+..+... +.......
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPGVERVVELEPGDEAGIGARRRYTWRG------LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhceEEEEEccCCCCCCcceEEEEEEEe------cCCcEEEEEEEEEeecCC
Confidence 3446789999999999999999 69999999999888862 222211112 22111 111222211 11221123
Q ss_pred CcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004508 283 GTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 336 (748)
Q Consensus 283 GsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkG 336 (748)
..+.+ ... .+ .++ .+.|.|+|.++ .|+|++-..++.+|
T Consensus 76 ~~~~~--~~~-g~--------~~~---~~~~~~~~~~~--gt~vt~~~~~~~~~ 113 (146)
T cd07824 76 SLLEV--RAS-GD--------LEG---VGRWTLAPDGS--GTVVRYDWEVRTTK 113 (146)
T ss_pred cEEEE--EEE-Ee--------eeE---EEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence 22222 221 11 222 36899999754 49999999999887
No 93
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.43 E-value=0.0015 Score=57.81 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=64.9
Q ss_pred eeeEEEeeecccccccceeeEEEEecceeeeeccCCCC-CCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCC
Q 004508 13 EGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (748)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~ 91 (748)
||+||+.....| ++||.||.|+++-||..|... -+.--+++-++-.- +|+ |.|....--+-.|-|.-....
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~P-m~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSHP-MVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhhcc-ccc--ccccCCCCCeeEEEEEEecCC
Confidence 799999776544 499999999999999977742 11222333333211 332 233322223667777777788
Q ss_pred CceEEEecCCHHHHHHHHHHHHH
Q 004508 92 NDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
.+++++=|.|.|-+.+|++++-.
T Consensus 73 ~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred cchhhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 94
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.34 E-value=0.17 Score=45.18 Aligned_cols=114 Identities=14% Similarity=-0.002 Sum_probs=66.2
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004508 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (748)
Q Consensus 207 KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyv 286 (748)
+....|++|+++||++|.|.+ ...+|.+.+..++++..........+... . . +....++.. +.......-.+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGVGARFVGG---R-K-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccceeEEEEE---e-c-CCccccceE-EEEEecCCCceE
Confidence 456789999999999999998 79999999998887764222111111111 0 0 011111111 111111111111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcc
Q 004508 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 339 (748)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP 339 (748)
....+..+. ....+.|.+.|.+++ .|+|++....+++++.+
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCCC-cEEEEEEEEEecCCcch
Confidence 111111111 244578999998763 69999999999999875
No 95
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=96.31 E-value=0.0084 Score=68.74 Aligned_cols=100 Identities=23% Similarity=0.313 Sum_probs=65.5
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEEecceeeeecc-CCCCCCC--CCceEEEeecceEEecCCccccccceeEEE
Q 004508 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHSKNE--DPVRSAIIDSCIRVTDNGRESIHRKVFFIF 83 (748)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~-~p~~~~~--~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf 83 (748)
.+.+.++||+++++... . |++|||.|++..+..... .|...+. .++...-+..+|=|.. ... .+.-++|
T Consensus 374 ~sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~--~~~--~~~~~~~ 445 (478)
T PTZ00267 374 TSDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPE--VYS--QKHPNQL 445 (478)
T ss_pred cCCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccH--Hhc--CCCCceE
Confidence 34567999999988742 3 899999999888777543 4433223 3333222555554411 001 1236777
Q ss_pred EEEecCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
.|.++ ..+++-+-|.|.+|.+.||++|+.|+
T Consensus 446 ~i~~~--~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFN--NGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEec--CCcEEEEecCChHHHHHHHHHHHHHh
Confidence 78544 35577778899999999999999984
No 96
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.22 E-value=0.12 Score=49.48 Aligned_cols=140 Identities=10% Similarity=-0.015 Sum_probs=74.4
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEE-EEEEEcCCC-c
Q 004508 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRREDDG-T 284 (748)
Q Consensus 207 KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~l-R~wrr~~dG-s 284 (748)
.....|++||+.|+++|.|++ ....|.+.+...+ .+++++-..-.+.+. .+++ ..|-.. +.......+ .
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg~~~~~---~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLPGASLTE---VEGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCCCceecc---ccCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCcE
Confidence 345679999999999999988 5777877554444 345454333333311 1222 122111 111111122 2
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHHH-HHHHHHHHH
Q 004508 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML-GRVAALREL 363 (748)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~mL-~~va~LRe~ 363 (748)
+.+...... ....|.+++. .-|.+.| +++ .|+|+|..+++.+|.++...........-+++ ..+++|++.
T Consensus 73 ~~~~~~g~~----~~~~g~~~~~---~~~~l~~-~~~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEAT---VTLRLSP-AGG-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEEEEec----CCCcceEEEE---EEEEEEe-cCC-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 222211110 0111223332 3578888 433 69999999999999998764333344444443 335556665
Q ss_pred H
Q 004508 364 F 364 (748)
Q Consensus 364 ~ 364 (748)
+
T Consensus 144 ~ 144 (146)
T cd07823 144 L 144 (146)
T ss_pred h
Confidence 4
No 97
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=96.20 E-value=0.011 Score=67.26 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=78.6
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEE----EeecceEEecCCccccccceeE
Q 004508 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSA----IIDSCIRVTDNGRESIHRKVFF 81 (748)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~----vid~~~~V~d~g~~~~~~~~~y 81 (748)
+.+++.|+|+||.++.-|.+ |+|=||||+--=|+|+- |... ++|---. +=+.++-+--.||+.|..+.-|
T Consensus 313 s~~~pei~GfL~~K~dgkKs---WKk~yf~LR~SGLYys~-K~ts--k~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~ 386 (622)
T KOG3751|consen 313 SSSPPEIQGFLYLKEDGKKS---WKKHYFVLRRSGLYYST-KGTS--KEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDY 386 (622)
T ss_pred cCCCccccceeeeccccccc---ceeEEEEEecCcceEcc-CCCC--CCchhhHHHHhcccCceEEeecchhccCCCCCc
Confidence 35778899999999987777 99999999999998876 4433 2232211 1156666667789999999999
Q ss_pred EEEEEecC--CCCceEE-EecCCHHHHHHHHHHHHHHH
Q 004508 82 IFTLYNTS--NHNDQLK-LGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 82 vf~i~~~~--~~~~~~~-~~a~s~eea~~W~~a~~~a~ 116 (748)
.|+|--.+ .+.+-++ |.|++...-..|+-||+-++
T Consensus 387 ~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 387 GFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 99996543 2336665 46677777899999999875
No 98
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.66 E-value=0.03 Score=52.13 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=69.2
Q ss_pred eeeEEEeee-cccccccceeeEEEEecceeeeeccCCCCCC--CCCceEEEe-ecceEEecCCc-cccccceeEEEEEEe
Q 004508 13 EGWLHLIRS-NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAII-DSCIRVTDNGR-ESIHRKVFFIFTLYN 87 (748)
Q Consensus 13 eGwl~~~g~-~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~--~~Pi~~~vi-d~~~~V~d~g~-~~~~~~~~yvf~i~~ 87 (748)
=|||--+=. +..+.+-|+.||++|+|+-|.-|+..|.+.. ..|..+.-| |--+||-..|. +.-+.+.-|.|.|=-
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 388876622 3456678999999999999999999998532 355555443 44445543321 111335567888755
Q ss_pred cCCCCceEEEecCCHHHHHHHHHHHHH
Q 004508 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
..- =..-.|..++.+|.+.|.+||++
T Consensus 82 g~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 422 25667899999999999999975
No 99
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.62 E-value=0.12 Score=47.97 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=58.2
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeccCCCC----C--CCCCceEEEeecce-EEecCCccccccceeEE
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHS----K--NEDPVRSAIIDSCI-RVTDNGRESIHRKVFFI 82 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~----~--~~~Pi~~~vid~~~-~V~d~g~~~~~~~~~yv 82 (748)
||||||..-.+.+|-. |.+.|+...+ +.+.|.--.+.. . -..+.+.. |+.|+ |-.|. -..=|.
T Consensus 1 k~GYLy~~~k~~~~~~-Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~-l~sc~~r~~~~------~dRRFC 72 (104)
T cd01249 1 KEGYLYMQEKSKFGGS-WTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLT-LKSCSRRKTES------IDKRFC 72 (104)
T ss_pred CCceEEEEcCCCCCCe-EEEEEEEEEcCCcEEEEEecccccccccCcccccceEEe-eeeccccccCC------ccceee
Confidence 6999999998887655 7766666554 243222111211 0 12333333 34454 33332 124689
Q ss_pred EEEEecCCCCceEEEecCCHHHHHHHHHHHH
Q 004508 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (748)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (748)
|.|-....+ ..++|=|.|..+-..||+|+.
T Consensus 73 Fei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 73 FDVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EeeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 999887544 679999999999999999984
No 100
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=95.29 E-value=0.12 Score=47.94 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=57.7
Q ss_pred CCCcceeeEEEeeecccccccceeeEEEEecc-eeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEE
Q 004508 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH-FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLY 86 (748)
Q Consensus 8 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~-~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~ 86 (748)
..+-++|.|.+++ |+ |.|+|+|+|... .|.|+.... .+=-|.+.+..+++|+-.. .+. |.|.
T Consensus 11 e~Il~~g~v~K~k----gl-~~kkR~liLTd~PrL~Yvdp~~----~~~KGeI~~~~~l~v~~k~-----~~~---F~I~ 73 (104)
T PF14593_consen 11 ELILKQGYVKKRK----GL-FAKKRQLILTDGPRLFYVDPKK----MVLKGEIPWSKELSVEVKS-----FKT---FFIH 73 (104)
T ss_dssp --EEEEEEEEEEE----TT-EEEEEEEEEETTTEEEEEETTT----TEEEEEE--STT-EEEECS-----SSE---EEEE
T ss_pred CeEEEEEEEEEee----ce-EEEEEEEEEccCCEEEEEECCC----CeECcEEecCCceEEEEcc-----CCE---EEEE
Confidence 3455999999963 33 379999999998 888887332 2222555557888888532 232 3344
Q ss_pred ecCCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 87 ~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
-+ +|+|-|-. ....|.+|.+|++++..+
T Consensus 74 tp---~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 74 TP---KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp ET---TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred CC---CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 33 78888877 556699999999998764
No 101
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.23 E-value=0.14 Score=49.06 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=61.2
Q ss_pred cceeeEEEeeeccccc-----ccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecc----eEEecCCcccc------
Q 004508 11 RMEGWLHLIRSNRIGL-----QYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSC----IRVTDNGRESI------ 75 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~-----~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~----~~V~d~g~~~~------ 75 (748)
.+.|+|..+..++... .-.+.||++|=..+|=|=|+|..+ +=.|+|-| +.|++..-...
T Consensus 4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~------~f~V~dy~~r~~l~V~~~e~~~~~~~~~~ 77 (125)
T cd01221 4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS------TFVVFDYAPRSFLRVEKIEPDNQKIPLGS 77 (125)
T ss_pred EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC------eEEEEeeccccceEEeecccccccccccc
Confidence 3678888776654321 123578999999999888877643 11222222 23443211111
Q ss_pred ---ccceeEEEEE-EecCCCCceEEEecCCHHHHHHHHHHHH
Q 004508 76 ---HRKVFFIFTL-YNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (748)
Q Consensus 76 ---~~~~~yvf~i-~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (748)
..+-+|..++ -|+..+...+.|.|.|.+|.++||+||.
T Consensus 78 ~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 78 NLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 2344565554 4555677889999999999999999985
No 102
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.16 E-value=0.72 Score=43.79 Aligned_cols=138 Identities=10% Similarity=0.029 Sum_probs=72.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEe-e-----cCceEEEEEEEccCCCCCCCCCceEEEEEEEEE
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH-L-----DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRR 279 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~-i-----d~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr 279 (748)
++...+|++|+++||+++.|.. ..++|++.+.....++. . .....+.+ .. +.. ..+-...+ ...
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~-~~-----~~~-~~~~~~~v--~~~ 73 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLK-NWPEWSPWEKLDPDMKRTYSGPDSGVGASYSW-EG-----NDK-VGEGEMEI--TES 73 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcc-cCcccCchhhcCcceEEEecCCCCCCCeEEEE-ec-----CCc-ccceEEEE--Eec
Confidence 5667789999999999999999 79999997776544432 1 11122222 11 000 11111111 111
Q ss_pred cCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccC-ccc-cchhHHHHHHHHHH
Q 004508 280 EDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-LQP-SSARSITIRMLGRV 357 (748)
Q Consensus 280 ~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~-~~~-~~~~~i~~~mL~~v 357 (748)
..+.. +...... .-|.. ....+.|.++|.++ +|+|+|.+..+..+..+. +.. .+...+-..+-..+
T Consensus 74 ~p~~~--i~~~~~~--~~~~~------~~~~~~~~~~~~~~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (150)
T cd07818 74 VPNER--IEYELRF--IKPFE------ATNDVEFTLEPVGG--GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGL 141 (150)
T ss_pred CCCcE--EEEEEEe--cCCcc------ccceEEEEEEEcCC--ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 12222 2222211 01110 12247899999954 599999999997754332 111 12222222233456
Q ss_pred HHHHHHHH
Q 004508 358 AALRELFR 365 (748)
Q Consensus 358 a~LRe~~~ 365 (748)
++|+++++
T Consensus 142 ~~lk~~~E 149 (150)
T cd07818 142 ANLKAVLE 149 (150)
T ss_pred HHHHHHhh
Confidence 77777664
No 103
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=95.15 E-value=0.92 Score=42.00 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEee
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHL 246 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~i 246 (748)
+....+|+||+++|++++.|++ ..++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCcceEEEEecCC
Confidence 4567789999999999999998 689999998888776543
No 104
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.03 E-value=1.2 Score=41.04 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=57.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEE-EEEEEcCCCc
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRREDDGT 284 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~l-R~wrr~~dGs 284 (748)
+....+|+||+++||++|.|.+ ....|.+.+....... +...+.+.+... .+. .+.+... ..... +.+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~-~~~G~~~~~~~~----~~~---~~~~~~~~~v~~~-~p~~ 71 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATGLS-LALGARLRFVVK----LPG---GPPRSFKPRVTEV-EPPR 71 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEeccc-cCCCCEEEEEEe----CCC---CCcEEEEEEEEEE-cCCC
Confidence 4567789999999999999998 6899997765544331 233333433322 111 1222222 22222 3333
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEe
Q 004508 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 331 (748)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~ 331 (748)
++ .+....-+ .+.. .....|.++|.+++ .|++++...
T Consensus 72 ~~-~~~~~~~~-----~~~~---~~~~~~~~~~~~~~-~T~~~~~~~ 108 (141)
T cd07822 72 RL-AWRGGLPF-----PGLL---DGEHSFELEPLGDG-GTRFVHRET 108 (141)
T ss_pred Ee-EEEecCCC-----CcEe---eEEEEEEEEEcCCC-cEEEEEeeE
Confidence 33 33332111 0111 23358999998544 688887643
No 105
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=94.90 E-value=0.9 Score=43.59 Aligned_cols=127 Identities=12% Similarity=0.005 Sum_probs=75.5
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEE
Q 004508 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVI 287 (748)
Q Consensus 208 avgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI 287 (748)
+.-.|++++++|+++|.|++ .|-.++..++.++.++ +.--.-.+.+ . .+++.+=-..++....+++..+.+
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~----~l~~ciPG~~~~e~~~-~~~~~~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPE----NLARCIPGVESIEKVG-DEYKGKVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HH----HHHHHSTTEEEEEEEC-TEEEEEEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred CcEEecCCHHHHHHHhcCHH----HHHhhCCCcEEeeecC-cEEEEEEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 34579999999999999755 8999999999999988 4433333331 1 345554344444555545555545
Q ss_pred EEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHH
Q 004508 288 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRM 353 (748)
Q Consensus 288 ~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~m 353 (748)
....... .+-+.+.. --.+...+++. |+|+|-..++..|.+..+...+.....-+|
T Consensus 72 ~~~g~g~------~~~~~~~~---~~~~~~~~~~~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l 127 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASA---NITLSLEDDGG-TRVTWSADVEVGGPLASLGQRLIESVARRL 127 (140)
T ss_dssp EEEEEEC------TCCEEEEE---EEEEEECCCTC-EEEEEEEEEEEECHHHHC-HHHHHHHHHHH
T ss_pred eeeccCC------ccceEEEE---EEEEEcCCCCC-cEEEEEEEEEEccCHHHhhHHHHHHHHHHH
Confidence 4444321 12233322 22234444454 999999999999999876433333333343
No 106
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=94.54 E-value=0.048 Score=64.19 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=73.9
Q ss_pred ceeeEEEe--eecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecC
Q 004508 12 MEGWLHLI--RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 12 ~eGwl~~~--g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
+||-|+|+ |+-++|...++||||-|.+.-|.|-|... ..|+.++-|..=--||..--+++.++ .+|.|.-.-
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~----~q~~~~Ipl~nI~avEklee~sF~~k--nv~qVV~~d 640 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG----KQPIYTIPLSNIRAVEKLEEKSFKMK--NVFQVVHTD 640 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeEEecCCc----cCcccceeHHHHHHHHHhhhhccCCC--ceEEEEecC
Confidence 88888886 55567866689999999999999999444 67888887773335554334555444 567776543
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 90 NHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
|++.+-|.+--||..|+.||+.+..
T Consensus 641 ---rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 641 ---RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred ---cceeEecCCchHHHHHHHHHHHHhc
Confidence 6999999999999999999998855
No 107
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.09 E-value=0.87 Score=41.72 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=58.6
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~ 90 (748)
.+||=+...+. | +.||+.|=.+.|=+=|+++. .-=.|+-|.=.+.+|.++ ..+ +...|.|-....
T Consensus 5 lleg~l~~~~~---~----~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~----~~~-d~~~F~v~~~~~ 69 (97)
T cd01222 5 LLEGRFREHGG---G----KPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEH----LPG-EPLCFRVIPFDD 69 (97)
T ss_pred eeeceEEeecC---C----CceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecC----CCC-CCcEEEEEecCC
Confidence 36777764443 2 45776665555555554442 333444443334466653 122 368888866544
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 91 HNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
..+++++-|.|+|+-..||++|+.|+.
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 447999999999999999999999864
No 108
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=91.83 E-value=1.1 Score=43.78 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=72.5
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCce-----EEEEEEEccCCCCCCCCCceEEEEEEEEE
Q 004508 205 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT-----DIIHKQLYSDWLPWGMKRRDLLLRRYWRR 279 (748)
Q Consensus 205 ~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~t-----dIvY~~~~~~~lP~pvs~RDfV~lR~wrr 279 (748)
.+.....|+.+|+++|+++.|++ .+++.-+.+..++|+++ +++. +|.|..+ |.--.-|...
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~~k~i-----------~e~F~Trv~~- 68 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVE-SYPEFLPWCSASRVLER-NERELIAELDVGFKGI-----------RETFTTRVTL- 68 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHH-hCchhccccccceEecc-CcceeEEEEEEEhhhe-----------eeeeeeeeee-
Confidence 45667789999999999999999 79999999999999986 4443 2222211 1111111111
Q ss_pred cCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccC
Q 004508 280 EDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 340 (748)
Q Consensus 280 ~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~ 340 (748)
.++.-.|....++-|-. -+.|+|-++|++.. .|+|...+.-+.+.-+-.
T Consensus 69 -~~~~~~I~~~l~~GPFk----------~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ll~ 117 (146)
T COG2867 69 -KPTARSIDMKLIDGPFK----------YLKGGWQFTPLSED-ACKVEFFLDFEFKSRLLG 117 (146)
T ss_pred -cCchhhhhhhhhcCChh----------hhcCceEEEECCCC-ceEEEEEEEeeehhHHHH
Confidence 22222444444432211 34689999999654 899999999998886654
No 109
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.52 E-value=9.4 Score=35.74 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=25.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~ 236 (748)
+....+|+|||+.||+++.|.+ ..++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3456789999999999999998 79999863
No 110
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=91.43 E-value=0.41 Score=55.48 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=60.7
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCC-C----Cc--------------eEEEeecceEEecCC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNE-D----PV--------------RSAIIDSCIRVTDNG 71 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~-~----Pi--------------~~~vid~~~~V~d~g 71 (748)
.++|-+-+.++ .+. |++||+.|.|+++.-+--.-+.+.+ . ++ +.--|..+|-|..
T Consensus 374 ~~~g~~~~~~~---~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 447 (496)
T PTZ00283 374 LYEGIVKKQSS---DLS-WKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPS-- 447 (496)
T ss_pred eeeeEEecccC---Ccc-cceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccH--
Confidence 36666665433 223 8999999988765444211111100 0 00 1111233444443
Q ss_pred ccccccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 72 RESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 72 ~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
..-..+.-|||.+.++ ..+++-|-|.+.+|.+.||++|++++
T Consensus 448 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 448 -KYTGSNAAHVFAVAFK--TGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred -HhhCCCCCcEEEEEec--CCcEEEEecCCchhHHHHHHHHHHhc
Confidence 2333456899999997 68899999999999999999999985
No 111
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.89 E-value=2.2 Score=40.44 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=55.2
Q ss_pred ceeeEEEEecceeeeeccCCCCC--CCCCceEEEeecceEEecCCc-cc--cccceeEEEEEEecCCCCceEEEecCCHH
Q 004508 29 SRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGR-ES--IHRKVFFIFTLYNTSNHNDQLKLGASSPE 103 (748)
Q Consensus 29 ~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vid~~~~V~d~g~-~~--~~~~~~yvf~i~~~~~~~~~~~~~a~s~e 103 (748)
.+.||..|=.+.+=.=|++.... ++--.|..+.=..++|+++.. .+ -..+--|.|.|-.+ ++...++|.|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence 45788777666666666553210 111222222212335665531 11 12256788888886 45567999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004508 104 EAAKWIHSLQEAALK 118 (748)
Q Consensus 104 ea~~W~~a~~~a~~~ 118 (748)
+-.+||+||+-|+..
T Consensus 99 ~K~kWm~al~~a~sn 113 (116)
T cd01223 99 LRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999764
No 112
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=89.70 E-value=9.7 Score=35.04 Aligned_cols=137 Identities=9% Similarity=-0.018 Sum_probs=67.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGsy 285 (748)
+....+|+||+++||++|.|.+ ..+.|.+......+-.. .+.+ ..+... . .......... +.... ..+..
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~-~Gg~-~~~~~~-~---~~g~~~~~~~--~i~~~-~~~~~ 71 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGPTTTAEMDLR-VGGR-WFFFMT-G---PDGEEGWVSG--EVLEV-EPPRR 71 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCcCCceEEccc-CCce-EEEEEE-C---CCCCEEeccE--EEEEE-cCCCe
Confidence 4556789999999999999988 68899875222222112 2222 222221 1 0011111111 12222 22222
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHHHHHHHHHHHHHH
Q 004508 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (748)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~~va~LRe~~~ 365 (748)
+.......+. |+ ... ....|.++|.++ +|+|++....-+.+- + . ..+...+...+-..+++||+++.
T Consensus 72 -i~~~~~~~~~-~~---~~~---~~~~~~~~~~~~--~T~v~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 72 -LVFTWAFSDE-TP---GPE---TTVTVTLEETGG--GTRLTLTHSGFPEED-A-E-QEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred -EEEEecccCC-CC---CCc---eEEEEEEEECCC--CEEEEEEEEccChHh-H-H-HHHHhCHhhHHHHHHHHHHHHhh
Confidence 2222221111 11 112 246788999984 589998887655431 1 1 11222333333345788888764
No 113
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.68 E-value=8.5 Score=36.27 Aligned_cols=106 Identities=9% Similarity=0.034 Sum_probs=63.8
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCce---EEEEEEEccCCCCCCCCCceEEEE-EEEEEcCCC
Q 004508 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT---DIIHKQLYSDWLPWGMKRRDLLLR-RYWRREDDG 283 (748)
Q Consensus 208 avgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~t---dIvY~~~~~~~lP~pvs~RDfV~l-R~wrr~~dG 283 (748)
....|+||+++||+++.|.+ ....|.+.+..++++..-++.. ..+..+.+. + +.. +... +... .+.+
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~-~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~--~--~~~---~~w~~~it~-~~p~ 73 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPD-NLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH--F--GIP---QRWTTEITE-VEPP 73 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcc-hHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe--c--CCc---eEEEEEEEE-EcCC
Confidence 45679999999999999999 7999999999999886332221 234444422 1 211 2111 1111 1334
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCC
Q 004508 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 335 (748)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpk 335 (748)
.+ +...++. |-++ .....+.++|.++ +|+||+.+..++.
T Consensus 74 ~~-f~~~~~~--------G~~~--~w~h~~~f~~~~~--gT~vt~~v~~~~p 112 (137)
T cd07820 74 RR-FVDEQVS--------GPFR--SWRHTHRFEAIGG--GTLMTDRVEYRLP 112 (137)
T ss_pred Ce-EEEEecc--------CCch--hCEEEEEEEECCC--ceEEEEEEEEeCC
Confidence 43 2333431 1111 1223567889765 5999999999974
No 114
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=89.34 E-value=18 Score=35.05 Aligned_cols=119 Identities=13% Similarity=-0.014 Sum_probs=73.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCc
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~-~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dGs 284 (748)
+..+..|+||+++|++++.+.+. ....|-+.+..+++++-=++.-.|-...+.+ .. ..+ .+.-|-... ++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~~~-D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERIDAV-DEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEEEE-cccc
Confidence 56678899999999999999873 3567989999999886312233455555522 11 111 222222222 4445
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCC
Q 004508 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 337 (748)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGw 337 (748)
..+.+.-++-+... -.-..+.+.+.+.|.+++ +|.|+|.+..++.+-
T Consensus 76 ~~~~y~vveg~~~~-----~~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLK-----DGYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccccc-----CceEEEEEEEEEEECCCC-CEEEEEEEEEEECCC
Confidence 56655555322111 013345577789998554 799999999997653
No 115
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=88.52 E-value=9.3 Score=37.68 Aligned_cols=138 Identities=14% Similarity=0.045 Sum_probs=73.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEE-EEEE-EcCCC
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWR-REDDG 283 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~l-R~wr-r~~dG 283 (748)
|.++-.|.+||++|++.|.|++ +--.++..++-+++.++ .--...+++ . .+++ ..|-.- +.-. .+...
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~-e~~~~v~l~---i-g~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGD-EYTAKVKLK---I-GPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCC-eEEEEEEEe---e-ccee-EEEEEEEEEccccCCCc
Confidence 4556679999999999999877 44566777777777666 333344441 1 2455 223221 1111 11233
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCccccchhHHHHHHHH-HHHHHHH
Q 004508 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLG-RVAALRE 362 (748)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~~~~~~~~i~~~mL~-~va~LRe 362 (748)
+|+|-...- |--..-.......+.|-+. .|+|+|..+.|.+|-+-++....-...+.++++ .+..|++
T Consensus 73 ~~~i~g~G~---------~~~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~ 141 (146)
T COG3427 73 SITINGSGG---------GAAGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSS 141 (146)
T ss_pred EEEEEeecc---------cccceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344332210 0000011122344556554 499999999999998876543333344444432 2344555
Q ss_pred HH
Q 004508 363 LF 364 (748)
Q Consensus 363 ~~ 364 (748)
.+
T Consensus 142 ~l 143 (146)
T COG3427 142 EL 143 (146)
T ss_pred HH
Confidence 44
No 116
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.62 E-value=5.1 Score=37.82 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=60.1
Q ss_pred cccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCC--CceEEEec
Q 004508 22 NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH--NDQLKLGA 99 (748)
Q Consensus 22 ~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~--~~~~~~~a 99 (748)
++.|.+ +|.|.-+--+|+.=.++.......|. .+.=.++.+.+-|.+-+-++.-.-|.|..+... ..++.+=|
T Consensus 21 ~~K~~e---R~vFLFe~~lvfsk~~~~~~~~~~~~--Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA 95 (114)
T cd01232 21 IQKGRE---RRVFLFEQSIIFAKEVKKKKQFGNPK--YIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKA 95 (114)
T ss_pred cCCCce---eEEEEeeceEEEEEEeccCCCCCcee--EEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEEC
Confidence 345544 77777777777765433321111221 333455566666664444456788888877653 58999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 004508 100 SSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 100 ~s~eea~~W~~a~~~a~~ 117 (748)
.|+|+-..|+..|++..+
T Consensus 96 ~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 96 NSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999998865
No 117
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=86.95 E-value=1.5 Score=51.26 Aligned_cols=96 Identities=23% Similarity=0.324 Sum_probs=65.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCC-C-CCceEEEeecceEEecCCccccccceeEEEEEEecC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN-E-DPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~-~-~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~ 89 (748)
+||=|+|+-.++-..| .||++|=...+-|-+.+-.-.. + ++--..-++++...++.-.+. ++.+++ +
T Consensus 274 KEG~l~Kis~k~~~~q---eRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~~~~~--~~tF~~-~----- 342 (623)
T KOG4424|consen 274 KEGQLQKISAKNGTTQ---ERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDDNEEL--PHTFIL-T----- 342 (623)
T ss_pred hccceeeeeccCCCcc---eeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccccccC--CceEEE-e-----
Confidence 9999999999877766 9999999988888764432111 1 222223345554444321111 122333 1
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 90 NHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
-+.+.++|.|.+.+|...|+.+|+.||+.
T Consensus 343 G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 GKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred cccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 26899999999999999999999999984
No 118
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.65 E-value=2.5 Score=39.65 Aligned_cols=78 Identities=21% Similarity=0.433 Sum_probs=58.5
Q ss_pred ccceeeEEEEecceeeeeccCCCC-----CCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCCCceEEEecCC
Q 004508 27 QYSRKRYFLLEDHFLKSFKSVPHS-----KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASS 101 (748)
Q Consensus 27 ~~~~~Ryfvl~g~~l~~yk~~p~~-----~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s 101 (748)
|=-+.|||||=.+.|-+....|.. .++.|+.-+.|- +.||. + +..++|.|--. --.++.+-|.|
T Consensus 26 qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~---~lEd~--e----~~~~aFeI~G~--li~~i~v~C~~ 94 (111)
T cd01225 26 EEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVT---RLEDT--E----ALKNAFEISGP--LIERIVVVCNN 94 (111)
T ss_pred cccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEe---chHhc--c----CccceEEEecc--CcCcEEEEeCC
Confidence 335799999999999999987743 357888777664 34432 1 23678888644 45678889999
Q ss_pred HHHHHHHHHHHHHH
Q 004508 102 PEEAAKWIHSLQEA 115 (748)
Q Consensus 102 ~eea~~W~~a~~~a 115 (748)
.+|...|+.-|+.-
T Consensus 95 ~~e~~~Wl~hL~~~ 108 (111)
T cd01225 95 PQDAQEWVELLNAN 108 (111)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999863
No 119
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=86.47 E-value=0.52 Score=57.66 Aligned_cols=95 Identities=23% Similarity=0.369 Sum_probs=68.4
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~ 91 (748)
++|.||++-. .....|.+|||-+.++.+-|++|.-... +.-..-++.| .|...-.++ ..-|.|.|.+ +
T Consensus 276 ~~~~l~~k~~--~~~~tw~r~~f~~q~~~l~~~~r~~~~~---~~~~~dL~~c-svk~~~~~~---drr~CF~iiS---~ 343 (785)
T KOG0521|consen 276 MEGYLRKKAS--NASKTWKRRWFSIQDGQLGYQHRGADAE---NVLIEDLRTC-SVKPDAEQR---DRRFCFEIIS---P 343 (785)
T ss_pred hhhhhhhhcc--cchhhHHhhhhhhhcccccccccccccc---ccccccchhc-cccCCcccc---cceeeEEEec---C
Confidence 6666666544 3677899999999999999999666442 1212222444 333221211 2479999998 8
Q ss_pred CceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 92 NDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
++.+.+-|+|..+-..||.+++..+.+
T Consensus 344 tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 344 TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999875
No 120
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=85.10 E-value=3.4 Score=50.33 Aligned_cols=97 Identities=19% Similarity=0.376 Sum_probs=69.1
Q ss_pred ceeeEEEeeecc-------cccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeec--ceEEecCCcccc-ccceeE
Q 004508 12 MEGWLHLIRSNR-------IGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS--CIRVTDNGRESI-HRKVFF 81 (748)
Q Consensus 12 ~eGwl~~~g~~~-------~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~--~~~V~d~g~~~~-~~~~~y 81 (748)
.-|+||..-++. -++.=..++|-||.|-.|+||..... ..|.+.+-|.- |+-|-. -+++ |-+.+|
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S---~tP~~lI~~~Eivclav~~--pd~~pn~~~~f 568 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKS---TTPNGLININEIVCLAVHP--PDTYPNTGFIF 568 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCC---CCCCceeeccceEEEeecC--CCCCCCcCcee
Confidence 349999866553 34444678999999999999995553 45665554431 222221 1222 346899
Q ss_pred EEEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
+|.||-. .++-+.+|+++++++.+|-+|+..+
T Consensus 569 ~fE~~l~--~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 569 IFEIYLP--GERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred EEEEeec--ccceEEeecccHHHHHHHHHHHHHh
Confidence 9999976 6899999999999999999998765
No 121
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=81.83 E-value=1.4 Score=52.11 Aligned_cols=92 Identities=17% Similarity=0.396 Sum_probs=63.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~ 91 (748)
+.|++.+.+ .++| ||++||||++.-...||+.+. +..+.|-..+=|-..|..+-. .--|.|-+- ..
T Consensus 251 kSgy~~~~~-s~~k--~lkrr~~v~k~gqi~~y~~~~-~~~~~p~s~~d~~s~~~~~~~-------~~s~~fqli---~~ 316 (936)
T KOG0248|consen 251 KSGYWTQLT-SRIK--SLKRRYVVFKNGQISFYRKHN-NRDEEPASKIDIRSVTKLEQQ-------GAAYAFQLI---TS 316 (936)
T ss_pred cccchhcch-HHHH--HHHhHheeeccceEEEEEcCC-CccccccCcccccccceeecc-------chhHHhhhh---hh
Confidence 778888888 4466 679999999999999999544 333555544433222222221 223333332 35
Q ss_pred CceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 92 NDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
.+++.+-+.|.--.+.|+.-|+.++.
T Consensus 317 t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 68999999999999999999999875
No 122
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=80.98 E-value=0.35 Score=51.21 Aligned_cols=138 Identities=10% Similarity=-0.054 Sum_probs=89.6
Q ss_pred CEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEE
Q 004508 176 WTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHK 255 (748)
Q Consensus 176 Wklv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~ 255 (748)
|.+....+-+.++.+..+. ......++..+..-........+.-.. .+..|+..-.-...++.+..++++...
T Consensus 27 ~s~~k~~~~v~~~~~a~~~------~~~~i~~v~~~~~lf~~~~~~~i~~~~-~i~~~~~g~~v~~~~~~~~~~~~~~~s 99 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK------PKGNISRVRRFFCLFVTEDLVFISLLW-LIELLQNGPEVYNMLEKIQKNTDIWTS 99 (241)
T ss_pred HHHHhhcceeEEeccCCcC------cCCcccccceeeccccccchheeecch-hhHHHhccchHHHHHHHHHhheeeeeE
Confidence 5566666666666665432 223344444443332222222222112 233333332444566667788888777
Q ss_pred EEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCC
Q 004508 256 QLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHG 321 (748)
Q Consensus 256 ~~~~~~lP~pvs~RDfV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g 321 (748)
.+.. +.-..+.+|+|+...+..+...+......++++++.+++...++|+..++.|++..|++..
T Consensus 100 ~~~~-~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~ 164 (241)
T KOG3845|consen 100 EFDS-FNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE 164 (241)
T ss_pred ecHh-hhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc
Confidence 7654 3345689999999999988777776777788999999999999999999999999999753
No 123
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=79.99 E-value=41 Score=34.43 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=83.3
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEE----cC
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRR----ED 281 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr----~~ 281 (748)
..-..+|++|+++|+++..|++ ..+.|++.+...+|++ ++- -+++. ..| .-..-.|.- +.
T Consensus 72 v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVld---dkr--SrW~~---~ap-------~g~~v~Wea~it~d~ 135 (217)
T COG5637 72 VEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVLD---DKR--SRWKA---NAP-------LGLEVEWEAEITKDI 135 (217)
T ss_pred EEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeeccC---CCc--cceeE---cCC-------CCceEEEeehhhccC
Confidence 3444578999999999999999 7999999999888774 443 23333 122 112224432 23
Q ss_pred CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCc-cc-cchhHHHHHHHHHHHH
Q 004508 282 DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QP-SSARSITIRMLGRVAA 359 (748)
Q Consensus 282 dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~-~~-~~~~~i~~~mL~~va~ 359 (748)
.| -.|...|++-... ++.|.|| +.+..+. +|.|...+.-.|-||.-.- .+ .|.+.--.++-.-+..
T Consensus 136 ~~-e~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg~-~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~R 203 (217)
T COG5637 136 PG-ERIQWESLPGARV-ENSGAVR---------FYDAPGD-STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLER 203 (217)
T ss_pred CC-cEEeeecCCCCcC-CCCccEE---------eeeCCCC-ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHH
Confidence 44 4677788744334 4567776 4555543 6788888887776665432 22 2333333445566888
Q ss_pred HHHHHHh
Q 004508 360 LRELFRA 366 (748)
Q Consensus 360 LRe~~~~ 366 (748)
+|+++..
T Consensus 204 Fk~~~e~ 210 (217)
T COG5637 204 FKEYQEN 210 (217)
T ss_pred HHHHHHc
Confidence 8888876
No 124
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=79.28 E-value=3.1 Score=50.62 Aligned_cols=94 Identities=24% Similarity=0.343 Sum_probs=69.3
Q ss_pred ceeeEEEeeec--ccccccceeeEEEEecceeeeeccCCCCC--CCCCceEEEee-cceEEecCCccccccceeEEEEEE
Q 004508 12 MEGWLHLIRSN--RIGLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIID-SCIRVTDNGRESIHRKVFFIFTLY 86 (748)
Q Consensus 12 ~eGwl~~~g~~--~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vid-~~~~V~d~g~~~~~~~~~yvf~i~ 86 (748)
++|-|-.+... -+.-.+++.|||||.|..|+-||.....+ .+-||.+..+= |- +++.--+..|-|+.|
T Consensus 1032 k~G~lKirEe~srll~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gv-------kkklKpPt~wg~T~i 1104 (1186)
T KOG1117|consen 1032 KEGILKIREEPSRLLSGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGV-------KKKLKPPTSWGFTAI 1104 (1186)
T ss_pred ccceEEeccCccccccCCccceEEEEecCcEEEEeehhhccccccccccccceEEecc-------ccccCCCCccceeee
Confidence 56766554332 22335678999999999999999776542 27788776662 22 445555889999999
Q ss_pred ecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 87 ~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
.-+ ++.-+.|.++-+.-.|+-.+-.|
T Consensus 1105 ~ek---hh~~l~cd~s~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1105 SEK---HHWYLCCDSSSEQTEWFTSIFKA 1130 (1186)
T ss_pred eec---ceEEEecCCccccchhhhhhhhh
Confidence 432 38899999999999999998777
No 125
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=78.23 E-value=4.8 Score=47.25 Aligned_cols=101 Identities=20% Similarity=0.331 Sum_probs=72.3
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEE--ecceeeee--ccCCCCCCCCCceEEEeecceEEecCCccccccceeEE
Q 004508 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSF--KSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFI 82 (748)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~y--k~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yv 82 (748)
.++..|||+||.-..++||.+ |-|-|-+- +-+.+.|- ..++... .-|.-+.++-.|.|=. -+++ ..=|.
T Consensus 262 p~p~t~eGYlY~QEK~~~g~s-WvKyYC~Y~retk~~TMvp~~qk~g~k-~g~~~~~~lKsC~RRk---tdSI--dKRFC 334 (812)
T KOG1451|consen 262 PTPSTKEGYLYMQEKSKIGKS-WVKYYCVYSRETKIFTMVPANQKTGTK-MGQTATFKLKSCSRRK---TDSI--DKRFC 334 (812)
T ss_pred CCCcccceeeeehhhhhccch-hhhheeEeecccceEEEeecccCCCCc-CCCcceEEehhhccCc---cccc--cccee
Confidence 356779999999999999987 66767664 34455552 2233322 5688888888887422 1233 23477
Q ss_pred EEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
|.|.-- +....++|-|-|.++-.-||+|..-|
T Consensus 335 FDve~~-erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 335 FDVEVE-ERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeec-ccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 777654 67889999999999999999998776
No 126
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=74.49 E-value=3 Score=47.89 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=56.6
Q ss_pred ceeeEEEeeeccccccc---ceeeEEEEecceeeeeccCCCC-C---CCCCceEEEeecceEEecCCccccccceeEEEE
Q 004508 12 MEGWLHLIRSNRIGLQY---SRKRYFLLEDHFLKSFKSVPHS-K---NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFT 84 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~---~~~Ryfvl~g~~l~~yk~~p~~-~---~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~ 84 (748)
..||+-+.|.=..=..| |..|||||+.+.|.|||..-.. . +..-+.+++|..+ .-+---|.
T Consensus 20 ~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ah------------EfDe~rfd 87 (611)
T KOG1739|consen 20 SDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAH------------EFDECRFD 87 (611)
T ss_pred cCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccc------------cchhheee
Confidence 67999777763332222 5599999999999999977643 1 1233334444322 11111222
Q ss_pred EEecCCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004508 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (748)
Q Consensus 85 i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (748)
|. -+..-..+-|...+.-..|+++|+.-...
T Consensus 88 Is---vn~nv~~lra~~~~hr~~w~d~L~wmk~e 118 (611)
T KOG1739|consen 88 IS---VNDNVWYLRAQDPDHRQQWIDALEWMKTE 118 (611)
T ss_pred eE---eccceeeehhcCcHHHHHHHHHHHHHhhc
Confidence 21 12445566678888889999999987653
No 127
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=73.68 E-value=57 Score=31.67 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=29.0
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004508 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (748)
Q Consensus 203 ~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~ 235 (748)
...+....+|+||++.|+++|.|.+ ...+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 4678899999999999999999988 6899988
No 128
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=73.25 E-value=4.7 Score=37.83 Aligned_cols=96 Identities=17% Similarity=0.315 Sum_probs=61.5
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCc--cccccceeEEEEEE
Q 004508 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGR--ESIHRKVFFIFTLY 86 (748)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~--~~~~~~~~yvf~i~ 86 (748)
.+.++|+++|.|-- + ++-|.+|||=|=.|.|..|-... + ...-.++.| .|+|-.- ..+-|..--+++|
T Consensus 2 DcIvhGyi~KLGGP-F-ls~WQ~Ry~~LfPNRLE~~~~~~-~---~~~eLi~M~---~i~~V~~e~~~iK~~~CI~ik~- 71 (116)
T cd01240 2 DCIVHGYIKKLGGP-F-LSQWQTRYFKLYPNRLELYGESE-A---NKPELITMD---QIEDVSVEFQQIKEENCILLKI- 71 (116)
T ss_pred ceEEeeehhhhCCH-H-HHHHHHHHheeCcceeeeccccc-c---cCCcEEEee---hhhhcchhheeeccCceEEEEE-
Confidence 34589999998763 2 34499999999999999974222 1 122223334 2232221 1122233333333
Q ss_pred ecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 87 ~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
.+..++.|-|.+.-+-.+|++.|+.|-.
T Consensus 72 ---k~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 72 ---RDEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred ---cCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 3478899999999999999999998854
No 129
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.11 E-value=18 Score=33.59 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=28.2
Q ss_pred eeEEEEEEecCC-CCceEEEecCCHHHHHHHHHHHHH
Q 004508 79 VFFIFTLYNTSN-HNDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 79 ~~yvf~i~~~~~-~~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
.-..|+|+...+ +.+.+-|-|.|.++|..|+..|..
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 446788866542 366799999999999999999863
No 130
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.94 E-value=14 Score=33.50 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=49.3
Q ss_pred ceeeEEEeeecccccccceeeEEEEec-ceeeeeccCCCC---CCCCCceEEEeec-ceEEecCCccccccceeEEEEEE
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLED-HFLKSFKSVPHS---KNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLY 86 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g-~~l~~yk~~p~~---~~~~Pi~~~vid~-~~~V~d~g~~~~~~~~~yvf~i~ 86 (748)
+.|-+.++ .|+ |.|+|=|+|.. =.|.|+. |.. ++++|+ .. +++|+-- +.+.++|
T Consensus 3 ~~g~v~Kr----~gl-f~kkR~LiLTd~PrL~yvd--p~~~~~KgeIp~-----s~~~l~v~~~-----~~~~F~I---- 61 (89)
T cd01262 3 KIGAVKKR----KGL-FAKKRQLILTNGPRLIYVD--PVKKVVKGEIPW-----SDVELRVEVK-----NSSHFFV---- 61 (89)
T ss_pred eeeeeeeh----hcc-ccceeeEEEecCceEEEEc--CCcCeEEeEecc-----cccceEEEEe-----cCccEEE----
Confidence 45656553 455 67899888864 4566665 433 234554 55 5666631 1233443
Q ss_pred ecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 87 ~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
...+|+|.|- .-...|.+|.++++++
T Consensus 62 --~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 62 --HTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred --ECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 3567888873 4447899999999987
No 131
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=71.82 E-value=1.7 Score=50.63 Aligned_cols=102 Identities=22% Similarity=0.276 Sum_probs=65.2
Q ss_pred cceeeEE-EeeecccccccceeeEEEEecceeeeeccCCC-CCCCCCceEEEeecceEEe-cCCccccccceeEEEEEEe
Q 004508 11 RMEGWLH-LIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH-SKNEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTLYN 87 (748)
Q Consensus 11 ~~eGwl~-~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~-~~~~~Pi~~~vid~~~~V~-d~g~~~~~~~~~yvf~i~~ 87 (748)
..||=|- |+|+=++=+. |+.|||-|.|-.|.|-|-+-. |-+.-||..--|-.---|. .+|+++ -.=.|.|+-
T Consensus 736 ~iEGQLKEKKGrWRf~kR-W~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rs----lpKAFEIFT 810 (851)
T KOG3723|consen 736 LIEGQLKEKKGRWRFIKR-WKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRS----LPKAFEIFT 810 (851)
T ss_pred hhcchhhhhccchhhhhh-hccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcc----cchhhheee
Confidence 4566653 5566556555 899999999999999664332 3223444332222110022 234444 344566664
Q ss_pred cCCCCceEEEecCCHHHHHHHHHHHHHHHHhCC
Q 004508 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALKGG 120 (748)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~~~ 120 (748)
. .+++.|-|.+..-|+.|.+.|.-|++++.
T Consensus 811 A---D~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 811 A---DKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred c---CceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 4 34499999999999999999999988643
No 132
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=65.94 E-value=2.7 Score=49.34 Aligned_cols=94 Identities=18% Similarity=0.333 Sum_probs=64.4
Q ss_pred ceeeEEEeeecccccccceeeEEEEeccee-----eeeccCCCCCCCCCceEEEeecceEEe--cCCccccccceeEEEE
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFL-----KSFKSVPHSKNEDPVRSAIIDSCIRVT--DNGRESIHRKVFFIFT 84 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l-----~~yk~~p~~~~~~Pi~~~vid~~~~V~--d~g~~~~~~~~~yvf~ 84 (748)
+.|+||-+|+|--- -|++|||||----- -.|..|. .+|-.-+-+||+ +|. |-. -..+|+..
T Consensus 466 hsgylyaig~nvwk--rwkkrffvlvqvsqytfamcsyrekk----aepqel~qldgy-tvdytdp~-pglqgg~~---- 533 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWK--RWKKRFFVLVQVSQYTFAMCSYREKK----AEPQELIQLDGY-TVDYTDPS-PGLQGGKH---- 533 (1218)
T ss_pred cceeehhhhhHHHH--HhHhhEEEEEEhhhhhhHhhhhhhcc----cChHHHhhccCe-eeccCCCC-CccccchH----
Confidence 78999999987332 38999999964221 1244344 456666778998 443 211 12223322
Q ss_pred EEecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 85 i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
++|.-...++++||..+.+|---|.+|+-.|--
T Consensus 534 ffnavkegdtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 534 FFNAVKEGDTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred HHHHhccCceEEeccCchhhhhHHHHHHHHhhC
Confidence 246667889999999999999999999999843
No 133
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=62.72 E-value=2.2 Score=51.70 Aligned_cols=92 Identities=21% Similarity=0.296 Sum_probs=72.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCC-ccccccceeEEEEEEecCC
Q 004508 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG-RESIHRKVFFIFTLYNTSN 90 (748)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g-~~~~~~~~~yvf~i~~~~~ 90 (748)
-.|+|.++=.|.=|.| |=|.|-..-.|++||+..+ ..|+-++.|=|+ .|.--| -+.+ +.=|||++.++
T Consensus 926 Lsg~Llrkfknssgwq---kLwvvft~fcl~fyKS~qD---~~~laslPlLgy-svs~P~~~d~i--~K~~vfkl~fk-- 994 (1036)
T KOG3531|consen 926 LSGYLLRKFKNSSGWQ---KLWVVFTNFCLFFYKSHQD---SEPLASLPLLGY-SVSIPAEPDPI--QKDYVFKLKFK-- 994 (1036)
T ss_pred hhHHHHHHhhccccce---eeeeeecceeeEeeccccc---cccccccccccc-ccCCCCCCCCc--chhheeeeehh--
Confidence 6788888888888855 9999999999999997774 677777777666 454322 2333 34589988775
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHH
Q 004508 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
++.|-++|++.-.-++||+.|+.|
T Consensus 995 -~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 995 -SHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred -hhHHHHhhhhhhhhhhHHHHhhcC
Confidence 578999999999999999999988
No 134
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=61.99 E-value=13 Score=36.05 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=30.2
Q ss_pred cceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 77 RKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 77 ~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
++..|-|+|-.-+.+...++|.|.|+.+-.+|+++|+++
T Consensus 96 ~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 96 SKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 478999999666556666999999999999999999986
No 135
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=61.78 E-value=10 Score=42.01 Aligned_cols=108 Identities=17% Similarity=0.303 Sum_probs=72.6
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC-C-CCCceEEEe-ecceEEecCCccccccceeEE
Q 004508 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-N-EDPVRSAII-DSCIRVTDNGRESIHRKVFFI 82 (748)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~-~~Pi~~~vi-d~~~~V~d~g~~~~~~~~~yv 82 (748)
...++.|-||+--.-.+.+.-|-.+.||+.|+|..+.-|..-|..- + .--.++.-+ +--++|-.. -++. .+..|.
T Consensus 277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd-sd~~-D~R~~C 354 (505)
T KOG3549|consen 277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD-SDTV-DSRQHC 354 (505)
T ss_pred ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc-cccc-ccccce
Confidence 3456779999999999999999999999999999999999777531 0 000000000 111111110 1111 135789
Q ss_pred EEEEecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
|.|-... .....|..+...|-++|-++|+.|.-
T Consensus 355 F~~qs~~--ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 355 FLLQSSG--GEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred EEEEcCC--CCceEEEEehhhHHHHHHHHHhhHHh
Confidence 9998764 34445778899999999999999864
No 136
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=61.64 E-value=2.2 Score=50.29 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=34.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVP 48 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p 48 (748)
+.+|||++++.|..+.++|++=||||++..|.-|..+.
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~ 600 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR 600 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh
Confidence 47899999999999999999999999999999998444
No 137
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=60.05 E-value=1.6e+02 Score=30.85 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=78.8
Q ss_pred ceEEEEEEecC--cHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEE-EEEEEc
Q 004508 204 PAIMAVGVVDG--TSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRRE 280 (748)
Q Consensus 204 ~~~KavgvV~a--spe~VfevL~d~d~~R~eWD~~~~e~~VVE~id~~tdIvY~~~~~~~lP~pvs~RDfV~l-R~wrr~ 280 (748)
.+-|..-.|.- .-.+|...|+|.+ .-...|..+..++++...+++.-++.++++.. ..+.+-+.+. ..--..
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn-~~~~fn~~~ikgki~RvYnpNLvmiqqry~~~----~~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFN-DNKKFGRKFIKGKVVRVYSPNLIMIQQRYKDA----SGSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhccc-cccCCCchheeeeEEEEeCCCeEEEEeecCCC----CCCcceEEeEeeeeeec
Confidence 45566666643 3678999999998 57789999999999999999999999998542 2333344443 322223
Q ss_pred CCCcEEEEEEecCCCCC-CCC-C--------------------------CeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004508 281 DDGTYVILYHSVFHKKC-PRQ-K--------------------------GSVRACLKSGGYVITPMNHGKKSVVKHM 329 (748)
Q Consensus 281 ~dGsyvI~~~SV~hp~~-Pp~-~--------------------------G~VRa~i~~gGwvI~Pl~~g~~~~VTyi 329 (748)
...+.+|++.|..-.+. |.. + ..-...+..+||+|+.-++ ...|||+
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d--~v~iTyi 208 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD--NIDITYV 208 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC--cEEEEEC
Confidence 55567888888653221 111 1 1233456778999988653 4667774
No 138
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=57.51 E-value=8.7 Score=44.03 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecc------eeeeeccCCCCCC---CCCc-eEEEeecceEEecCCcccc
Q 004508 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSKN---EDPV-RSAIIDSCIRVTDNGRESI 75 (748)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~~---~~Pi-~~~vid~~~~V~d~g~~~~ 75 (748)
+.+-.++.|.++.. ++|+|.--|+++|.+|..- .|.+|..+..+.. .-=+ |.+-+-.|..||.. ++-.
T Consensus 4 ~~~~~~k~g~~~~~-~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~-~~~~ 81 (429)
T KOG4047|consen 4 ICSCLVKDGVPDNH-RNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESG-RRCQ 81 (429)
T ss_pred ccCcccccCccchh-hhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecc-cccc
Confidence 44567789998875 4568877799999999763 2334443333322 2234 44444444477765 4444
Q ss_pred ccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 76 HRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 76 ~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
-++-+|+|..-+..+ .|.|.+.-+++.||++|..-+-
T Consensus 82 ~~~~i~~~f~~~a~e-----~~~~~q~l~~~~w~~~i~~~~~ 118 (429)
T KOG4047|consen 82 TGPGITAFFCDRAEE-----LFNMLQDLMQANWINAIEEPAI 118 (429)
T ss_pred cCCCceEEEecchHH-----HHHHHHHHHhhhhhhhhhhccc
Confidence 577788888777654 7889999999999999987643
No 139
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=55.20 E-value=1.2e+02 Score=29.50 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=58.5
Q ss_pred eeEEEEecceeeeeccCC-CCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCCCceEEEecCCHHHHHHHH
Q 004508 31 KRYFLLEDHFLKSFKSVP-HSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWI 109 (748)
Q Consensus 31 ~Ryfvl~g~~l~~yk~~p-~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~ 109 (748)
++-|.-+.-.|++=+++. ......| +.+.=+++.+.+.|..-+-+....-|.|.... ....|++=|.|.|.-..|+
T Consensus 32 RhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~-~~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 32 RHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNA-REEVYILQAPTPEIKAAWV 108 (133)
T ss_pred eEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCC-CCcEEEEEcCCHHHHHHHH
Confidence 555666677777655421 1101233 24556667777777644334457788888775 5679999999999999999
Q ss_pred HHHHHHHHhC
Q 004508 110 HSLQEAALKG 119 (748)
Q Consensus 110 ~a~~~a~~~~ 119 (748)
+.|.....++
T Consensus 109 ~~I~~iL~~Q 118 (133)
T cd01227 109 NEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHH
Confidence 9999988743
No 140
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=54.89 E-value=57 Score=30.26 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=57.7
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeecc-CCCC--CCCCCceEEEeecceEEecCCccccccceeEEEEEEe
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~-~p~~--~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~ 87 (748)
.++|=|+-...+..-.. +|.++|++...+|--... +... ....|+..+.+. -|.|++ ++-.+|.|.-
T Consensus 3 i~~G~l~e~~~~~~kp~-~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~---ni~D~~------~~kNafki~t 72 (100)
T cd01226 3 ILYGELEEFDVETKKPV-QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVV---NVKDRE------NAKKVLKLLI 72 (100)
T ss_pred EEcCcEEEechhhCCcc-ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEE---ecCCCc------CcCceEEEEe
Confidence 45666666666544333 455588888888765331 1111 224566555443 345544 3566777765
Q ss_pred cCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004508 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (748)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (748)
.. ++ -.+.|.|+++-..||..|++|+
T Consensus 73 ~~-~s--~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 73 FP-ES--RIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CC-cc--EEEEeCCHHHHHHHHHHHHHHh
Confidence 42 33 3477999999999999999996
No 141
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=47.46 E-value=1.7e+02 Score=27.67 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=66.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE--EeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCC
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV--EHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 283 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~~e~~VV--E~id~~tdIvY~~~~~~~lP~pvs~RDfV~lR~wrr~~dG 283 (748)
||....+++|++++|+.|.+. ...|-.-...+.+ .+|.| .-|.+. .+++--+.+.......+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s----~~~DI~~~tgk~~~~~~L~G---~~Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDS----LLYDIKQATGKKLPVKQLKG---FSYQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHH----HHHHHHHHcCCCCChhhcCC---cEEEEE--------cCCCCEEEEEEEEEcCCC
Confidence 466778999999999999852 2333222222222 23322 234443 122324555444443566
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccCc
Q 004508 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL 341 (748)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~~~VTyi~~vDpkGwiP~~ 341 (748)
.|.+...|. .| ...-.|.|+|++++ .|.|+|-=.....++...+
T Consensus 66 ~Y~~~~~s~--------~~-----~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~~~~~~ 109 (120)
T PF11687_consen 66 RYAATFSSS--------RG-----TFTISYEIEPLDDG-SIEVTYEEEYESKGFFQKL 109 (120)
T ss_pred EEEEEEEec--------CC-----CEEEEEEEEECCCC-cEEEEEEEEEccCCHHHHH
Confidence 677777764 12 23468999999887 7999999999999877654
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=43.48 E-value=28 Score=42.64 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=36.4
Q ss_pred ceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHHHhCC
Q 004508 78 KVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALKGG 120 (748)
Q Consensus 78 ~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~~~ 120 (748)
+..|||.|--+.-...-+.+||.|+|||-.|.+++++++..+.
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~ 914 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKAD 914 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhh
Confidence 3588888877766777899999999999999999999987543
No 143
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=42.26 E-value=2.7e+02 Score=25.33 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=25.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~ 236 (748)
+....+|+|||+.|+++|.|.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 4556789999999999999988 68999765
No 144
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=41.68 E-value=28 Score=32.03 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=51.9
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeee--eccCCCCC-C------CCCceEEEeecceEEecCCcccccccee
Q 004508 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKS--FKSVPHSK-N------EDPVRSAIIDSCIRVTDNGRESIHRKVF 80 (748)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~--yk~~p~~~-~------~~Pi~~~vid~~~~V~d~g~~~~~~~~~ 80 (748)
-..||.|++.-+ -. .+.|=|.|=+-.|-| ||+++... . .+|+.-+ .++..
T Consensus 3 Lv~eg~lvel~~--~~---rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl------~~~~~---------- 61 (96)
T cd01228 3 LVKDSFLVELVE--GS---RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADL------SFPSE---------- 61 (96)
T ss_pred ccccceeeeehh--CC---CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHh------eecch----------
Confidence 357899998653 22 246777777766655 44333321 0 2444222 22221
Q ss_pred EEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004508 81 FIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (748)
Q Consensus 81 yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (748)
.|++.|+ .++.+.+-|.|.+|-++||+++...
T Consensus 62 -~~~~~~~--~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 62 -PFRIHNK--NGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred -hhhcccc--CCceEEEEecCHHHHHHHHHHHHHH
Confidence 2666654 4889999999999999999999764
No 145
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=38.59 E-value=18 Score=44.58 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=27.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCC
Q 004508 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH 49 (748)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~ 49 (748)
-.+|||++-.. .+.+ +++|||+|.+-+|.||+-...
T Consensus 78 ~~~g~l~k~~n--~~~~-~~~r~f~l~~g~ls~~~~~~~ 113 (799)
T KOG1737|consen 78 SLEGILLKWRN--YSKG-PSSRWFVLSGGLLSYYFDNSF 113 (799)
T ss_pred cccceeecccc--ccCC-cccceEEecCcceeeeccCCc
Confidence 37899999555 5555 569999999999999984443
No 146
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.59 E-value=39 Score=39.95 Aligned_cols=104 Identities=21% Similarity=0.194 Sum_probs=67.5
Q ss_pred ceeeEEEe-------eecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeec----ceEEe--cCCccccccc
Q 004508 12 MEGWLHLI-------RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS----CIRVT--DNGRESIHRK 78 (748)
Q Consensus 12 ~eGwl~~~-------g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~----~~~V~--d~g~~~~~~~ 78 (748)
|.|+|.++ +..-.|+.=|++=|-||+|-.|++-| + +-+-+..+.++ -+.|- ---+-+...+
T Consensus 508 k~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqk-D-----ey~p~kalse~~lknavsvHHALAt~AtdY~K 581 (774)
T KOG0932|consen 508 KSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQK-D-----EYKPGKALSESDLKNAVSVHHALATPATDYSK 581 (774)
T ss_pred hhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeec-c-----ccCcccchhhhhhhhhhhhhhhhcCCCccccc
Confidence 77888765 33446777799999999999996665 2 22222222222 11111 0012344456
Q ss_pred eeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHHHHH--hCCCCC
Q 004508 79 VFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL--KGGPHQ 123 (748)
Q Consensus 79 ~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~--~~~~~~ 123 (748)
..+||++- -.+-+.+-|-|.|+|||..|+..|-.+++ .+.+-|
T Consensus 582 Kp~Vf~lr--tAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfP 626 (774)
T KOG0932|consen 582 KPHVFKLR--TADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFP 626 (774)
T ss_pred CCceEEEE--eccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 67787764 35789999999999999999999998776 444444
No 147
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=30.64 E-value=94 Score=30.02 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.3
Q ss_pred EecCCHHHHHHHHHHHHH
Q 004508 97 LGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 97 ~~a~s~eea~~W~~a~~~ 114 (748)
.|..+...+++||+-|++
T Consensus 94 tg~~~~~sL~~WI~~Lq~ 111 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQE 111 (126)
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 456788899999999987
No 148
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=4.8e+02 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=29.1
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004508 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (748)
Q Consensus 203 ~~~~KavgvV~aspe~VfevL~d~d~~R~eWD~ 235 (748)
...++.+.+|++||+.||+.+.+.+ .+.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4689999999999999999999988 7999977
No 149
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.28 E-value=4.9e+02 Score=24.53 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=23.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccc
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWD 234 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD 234 (748)
+.....++||++.||+.+.+.+ ...+|-
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe-~~~~W~ 29 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPE-LLKQWF 29 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHH-HHhccC
Confidence 4456789999999999999887 688884
No 150
>PHA02770 hypothetical protein; Provisional
Probab=28.72 E-value=1.6e+02 Score=25.24 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=34.8
Q ss_pred EEEEecceeeeeccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEecCCCCceEEEe
Q 004508 33 YFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLG 98 (748)
Q Consensus 33 yfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g~~~~~~~~~yvf~i~~~~~~~~~~~~~ 98 (748)
-|..+...|+|-|++.. |-|++.|.. .-|-|.+.++++.+-.+++|
T Consensus 25 ~flvepqilfyakkrnr-----------i~gylei~~---------~hyrfelifskdnsvsitig 70 (81)
T PHA02770 25 SFLVEPQILFYAKKRNR-----------ITGYLEVNG---------RHYRFELIFSKDNSVSITIG 70 (81)
T ss_pred EEEecceeeEeeeccCe-----------EEEEEEEcC---------ceEEEEEEEecCCcEEEEEe
Confidence 47888999999885441 345666654 47999999999999888877
No 151
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=28.12 E-value=52 Score=30.58 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCcccccccc
Q 004508 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCF 237 (748)
Q Consensus 206 ~KavgvV~aspe~VfevL~d~d~~R~eWD~~~ 237 (748)
++...+|+||++.|++++.+.+ ...+|....
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhccccc
Confidence 5667889999999999999988 688998753
No 152
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=27.33 E-value=1.2e+02 Score=28.51 Aligned_cols=32 Identities=9% Similarity=0.367 Sum_probs=27.4
Q ss_pred eeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHHH
Q 004508 79 VFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (748)
Q Consensus 79 ~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (748)
..||++++|. -.|.|.|.+.+++..|+..|+.
T Consensus 75 nTFvLK~~~~----~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 75 YTFVLKVDDN----TDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cEEEEEecCC----ceEEEEcCCHHHHHHHHHHHhc
Confidence 4788888764 4899999999999999998864
No 153
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=27.04 E-value=5.4e+02 Score=24.26 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=23.5
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004508 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (748)
Q Consensus 207 KavgvV~aspe~VfevL~d~d~~R~eWD~ 235 (748)
.....++||++.||+++.|.+ ...+|-.
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~-~~~~W~~ 30 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPD-ALAKWLP 30 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHH-HHhhcCC
Confidence 445679999999999999988 6888864
No 154
>PF15406 PH_6: Pleckstrin homology domain
Probab=25.65 E-value=1.9e+02 Score=27.41 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=37.5
Q ss_pred CCCCCCCCceEEEe-ecceEEecCCccccccceeEEEEEEecCCCCceEEEecCCHHHHHHHHHHHH
Q 004508 48 PHSKNEDPVRSAII-DSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (748)
Q Consensus 48 p~~~~~~Pi~~~vi-d~~~~V~d~g~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (748)
..|. ..|-|.+-| |-. .|+..| ..=|.|++ +.++-+|=|.|++|=..|+.+|+
T Consensus 57 ~~dk-a~P~GiinLadas-e~~~~g------~~kF~f~~-----~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 57 AEDK-ASPSGIINLADAS-EPEKDG------SNKFHFKI-----KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred cccc-cCCcceEehhhcc-ccccCC------CceEEEEe-----CCceeeeecCCHHHhccHHHHhh
Confidence 4443 688877777 533 566554 35677777 44566777999999999999886
No 155
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=25.07 E-value=4.9e+02 Score=23.15 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=18.2
Q ss_pred cCcHHHHHHHHHhCCCCcccc
Q 004508 213 DGTSEAIFQTLMSLGASRSVW 233 (748)
Q Consensus 213 ~aspe~VfevL~d~d~~R~eW 233 (748)
+||++.||+++.+.+ ...+|
T Consensus 1 ~ap~e~Vw~a~t~~~-~~~~W 20 (124)
T PF08327_consen 1 DAPPERVWEALTDPE-GLAQW 20 (124)
T ss_dssp SSSHHHHHHHHHSHH-HHHHH
T ss_pred CcCHHHHHHHHCCHh-HHhhc
Confidence 589999999999887 68999
No 156
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.12 E-value=45 Score=40.85 Aligned_cols=105 Identities=24% Similarity=0.361 Sum_probs=75.5
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceEEEeecce--EEecCCcc--ccccceeEEEEE
Q 004508 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI--RVTDNGRE--SIHRKVFFIFTL 85 (748)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vid~~~--~V~d~g~~--~~~~~~~yvf~i 85 (748)
..|.||+-.++.---+ +-|-.=|-.++-+-..+|.-...+|=+.|+ ..||-+- -+-.-|.+ +|-+..--||-|
T Consensus 812 grmnGwlRVyRdd~~~-stwl~~wammdl~~~~fy~~~gadple~p~--f~idlnkeqw~Lrtgqe~~~~v~dimrvfnv 888 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEA-STWLLGWAMMDLEGDDFYDMNGADPLEDPV--FLIDLNKEQWALRTGQESLTHVPDIMRVFNV 888 (1265)
T ss_pred hhcccceeeeccccch-hHHHHHHHHhhhcccchhhccCCccccCce--EEeecchhHHHHHhccccccCCcchhhhhee
Confidence 4599999888876444 447777888888888888877777656665 3344331 11111222 222556667888
Q ss_pred EecCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004508 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (748)
Q Consensus 86 ~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (748)
|--++..+.+.|+|-++-.|+.|-..|+.|..
T Consensus 889 liIK~~~r~l~I~ap~~~saerwA~CLq~aqk 920 (1265)
T KOG0976|consen 889 LIIKDLERLLMIAAPSPKSAERWALCLQDAQK 920 (1265)
T ss_pred eeecchhhhheeecCCCccHHHHHHHHHHHHH
Confidence 88889999999999999999999999999965
Done!