Query 004509
Match_columns 748
No_of_seqs 336 out of 2840
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 00:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0021 TktA Transketolase [Ca 100.0 2E-143 5E-148 1186.9 68.3 660 85-748 3-662 (663)
2 PRK12754 transketolase; Review 100.0 1E-133 2E-138 1164.1 68.6 652 89-748 5-663 (663)
3 PRK12753 transketolase; Review 100.0 8E-132 2E-136 1156.2 67.5 652 89-748 5-663 (663)
4 PLN02790 transketolase 100.0 2E-129 3E-134 1138.3 71.6 651 95-748 1-654 (654)
5 TIGR00232 tktlase_bact transke 100.0 8E-129 2E-133 1132.0 70.5 651 90-748 2-653 (653)
6 PTZ00089 transketolase; Provis 100.0 6E-128 1E-132 1126.0 72.3 652 86-748 4-658 (661)
7 KOG0523 Transketolase [Carbohy 100.0 2E-122 4E-127 1008.8 47.2 611 83-748 5-625 (632)
8 PRK05899 transketolase; Review 100.0 5E-114 1E-118 1009.8 69.7 621 82-748 2-624 (624)
9 PLN02582 1-deoxy-D-xylulose-5- 100.0 2E-104 3E-109 918.5 55.2 546 84-748 47-666 (677)
10 COG1154 Dxs Deoxyxylulose-5-ph 100.0 3E-104 6E-109 871.6 51.7 546 84-748 18-622 (627)
11 PRK13012 2-oxoacid dehydrogena 100.0 2E-103 5E-108 921.5 62.3 639 82-748 83-866 (896)
12 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 6E-104 1E-108 917.6 56.0 546 82-748 13-616 (617)
13 PRK05444 1-deoxy-D-xylulose-5- 100.0 4E-102 9E-107 901.4 54.8 545 82-748 19-580 (580)
14 TIGR03186 AKGDH_not_PDH alpha- 100.0 4E-101 8E-106 898.6 62.7 624 82-748 69-858 (889)
15 PRK12571 1-deoxy-D-xylulose-5- 100.0 8E-102 2E-106 901.9 56.8 543 86-748 24-627 (641)
16 PLN02234 1-deoxy-D-xylulose-5- 100.0 2E-101 5E-106 884.8 52.4 504 85-708 81-614 (641)
17 PLN02225 1-deoxy-D-xylulose-5- 100.0 1E-100 2E-105 878.3 53.6 526 85-748 93-690 (701)
18 PRK12315 1-deoxy-D-xylulose-5- 100.0 4.6E-98 1E-102 863.6 55.6 544 82-748 15-580 (581)
19 PRK09405 aceE pyruvate dehydro 100.0 1.8E-96 4E-101 859.5 64.2 626 82-748 75-861 (891)
20 TIGR00759 aceE pyruvate dehydr 100.0 7.9E-80 1.7E-84 710.0 62.9 627 82-748 69-855 (885)
21 PF00456 Transketolase_N: Tran 100.0 7.1E-77 1.5E-81 639.3 29.8 331 89-421 2-332 (332)
22 PRK05261 putative phosphoketol 100.0 3.4E-65 7.4E-70 590.5 52.0 585 106-746 47-739 (785)
23 COG3958 Transketolase, C-termi 100.0 7.7E-67 1.7E-71 530.8 28.5 295 437-748 6-312 (312)
24 COG3959 Transketolase, N-termi 100.0 1.5E-62 3.3E-67 481.6 25.5 236 85-334 7-243 (243)
25 COG2609 AceE Pyruvate dehydrog 100.0 1E-57 2.2E-62 502.4 53.4 635 82-748 72-857 (887)
26 cd02017 TPP_E1_EcPDC_like Thia 100.0 9.4E-58 2E-62 491.1 32.0 271 86-367 2-354 (386)
27 cd02012 TPP_TK Thiamine pyroph 100.0 3.7E-53 7.9E-58 444.6 27.7 252 93-358 1-253 (255)
28 CHL00144 odpB pyruvate dehydro 100.0 5.4E-52 1.2E-56 448.3 29.4 289 438-748 4-323 (327)
29 PRK11892 pyruvate dehydrogenas 100.0 2.9E-51 6.2E-56 458.5 31.1 290 437-748 141-462 (464)
30 PLN02683 pyruvate dehydrogenas 100.0 6.5E-51 1.4E-55 443.9 31.4 302 429-748 18-350 (356)
31 PRK09212 pyruvate dehydrogenas 100.0 1.4E-50 3.1E-55 438.0 28.6 294 437-748 3-323 (327)
32 PTZ00182 3-methyl-2-oxobutanat 100.0 4.7E-49 1E-53 429.2 28.4 295 436-748 33-355 (355)
33 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.1E-45 2.3E-50 379.0 26.2 293 438-748 2-322 (324)
34 PRK09404 sucA 2-oxoglutarate d 100.0 6.9E-42 1.5E-46 405.3 52.2 476 198-708 313-878 (924)
35 cd02007 TPP_DXS Thiamine pyrop 100.0 5.2E-44 1.1E-48 359.8 21.9 195 108-337 1-195 (195)
36 PF13292 DXP_synthase_N: 1-deo 100.0 1E-44 2.3E-49 368.6 14.6 218 82-331 13-270 (270)
37 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 6.7E-41 1.4E-45 394.9 43.4 471 196-703 312-879 (929)
38 KOG0524 Pyruvate dehydrogenase 100.0 2E-37 4.3E-42 309.5 20.6 295 436-748 33-358 (359)
39 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1.2E-35 2.6E-40 289.2 16.9 154 443-605 2-156 (156)
40 PF02779 Transket_pyr: Transke 100.0 3.4E-33 7.4E-38 277.9 13.0 168 437-609 2-176 (178)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 3E-32 6.5E-37 267.1 15.2 155 443-605 2-167 (167)
42 COG3957 Phosphoketolase [Carbo 100.0 2E-30 4.4E-35 288.7 29.8 511 107-674 59-666 (793)
43 smart00861 Transket_pyr Transk 100.0 2.9E-30 6.2E-35 254.5 18.7 163 439-606 1-167 (168)
44 KOG0525 Branched chain alpha-k 100.0 3.9E-30 8.4E-35 253.6 13.8 291 436-747 39-359 (362)
45 cd02011 TPP_PK Thiamine pyroph 99.9 9.5E-27 2.1E-31 236.0 17.8 175 148-340 2-211 (227)
46 COG1071 AcoA Pyruvate/2-oxoglu 99.9 2.7E-25 5.8E-30 238.0 27.1 247 82-361 24-286 (358)
47 CHL00149 odpA pyruvate dehydro 99.9 4.3E-24 9.3E-29 232.4 31.8 228 141-400 72-311 (341)
48 PF00676 E1_dh: Dehydrogenase 99.9 2.5E-24 5.4E-29 230.8 27.8 223 142-400 47-279 (300)
49 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 4.4E-24 9.5E-29 228.8 29.4 219 141-397 48-278 (293)
50 PLN02374 pyruvate dehydrogenas 99.9 1.2E-23 2.7E-28 233.7 33.4 224 142-397 139-374 (433)
51 PLN02269 Pyruvate dehydrogenas 99.9 2.7E-23 5.8E-28 226.9 29.1 217 141-396 82-309 (362)
52 TIGR03182 PDH_E1_alph_y pyruva 99.9 7E-23 1.5E-27 221.2 29.3 216 141-395 54-281 (315)
53 TIGR03181 PDH_E1_alph_x pyruva 99.9 3.1E-22 6.7E-27 218.3 30.5 216 141-396 75-295 (341)
54 KOG0225 Pyruvate dehydrogenase 99.8 4E-19 8.6E-24 183.7 15.8 199 141-370 111-317 (394)
55 cd02016 TPP_E1_OGDC_like Thiam 99.8 1.3E-18 2.9E-23 181.1 18.4 140 195-341 109-255 (265)
56 PF09364 XFP_N: XFP N-terminal 99.8 2.3E-18 5E-23 182.1 12.9 220 107-352 46-307 (379)
57 cd00568 TPP_enzymes Thiamine p 99.7 5.4E-17 1.2E-21 159.3 13.8 116 195-331 42-168 (168)
58 KOG1182 Branched chain alpha-k 99.7 4.2E-17 9.1E-22 167.0 10.1 150 185-347 180-333 (432)
59 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 1.7E-16 3.7E-21 157.1 12.2 114 197-331 46-171 (172)
60 cd02008 TPP_IOR_alpha Thiamine 99.7 2.4E-16 5.2E-21 157.0 11.7 117 197-331 49-176 (178)
61 cd02003 TPP_IolD Thiamine pyro 99.6 8.7E-16 1.9E-20 156.4 12.0 119 197-336 46-188 (205)
62 cd03371 TPP_PpyrDC Thiamine py 99.6 1.4E-15 3.1E-20 152.6 12.6 121 196-337 45-168 (188)
63 PRK06163 hypothetical protein; 99.6 4.9E-15 1.1E-19 150.0 14.5 117 198-335 56-176 (202)
64 cd02001 TPP_ComE_PpyrDC Thiami 99.6 2.7E-15 5.8E-20 146.3 11.6 115 197-333 40-156 (157)
65 cd02015 TPP_AHAS Thiamine pyro 99.6 3.2E-15 6.8E-20 150.0 12.3 116 197-333 48-175 (186)
66 cd02013 TPP_Xsc_like Thiamine 99.6 2.2E-15 4.8E-20 152.4 11.0 119 197-335 51-182 (196)
67 cd02006 TPP_Gcl Thiamine pyrop 99.6 2.9E-15 6.4E-20 152.2 11.1 119 197-335 55-197 (202)
68 PRK12270 kgd alpha-ketoglutara 99.6 3E-12 6.4E-17 149.0 36.7 464 205-703 625-1176(1228)
69 PF02780 Transketolase_C: Tran 99.6 4E-16 8.7E-21 146.1 3.5 110 622-740 1-124 (124)
70 cd02002 TPP_BFDC Thiamine pyro 99.6 3E-15 6.4E-20 148.9 9.4 112 199-331 49-178 (178)
71 cd02010 TPP_ALS Thiamine pyrop 99.6 1.3E-14 2.8E-19 144.4 13.2 116 197-333 46-171 (177)
72 cd02005 TPP_PDC_IPDC Thiamine 99.6 1.1E-14 2.4E-19 145.7 12.4 117 197-333 48-175 (183)
73 TIGR03846 sulfopy_beta sulfopy 99.6 2.6E-14 5.7E-19 142.6 12.6 114 198-334 41-158 (181)
74 cd02014 TPP_POX Thiamine pyrop 99.6 3.4E-14 7.4E-19 141.5 13.2 116 197-333 49-174 (178)
75 PF02775 TPP_enzyme_C: Thiamin 99.5 1.2E-14 2.7E-19 140.9 9.4 115 196-329 25-153 (153)
76 TIGR03297 Ppyr-DeCO2ase phosph 99.5 8.9E-14 1.9E-18 152.5 16.7 130 180-336 208-340 (361)
77 cd03372 TPP_ComE Thiamine pyro 99.5 3.6E-14 7.9E-19 141.4 12.3 116 198-336 41-159 (179)
78 cd02009 TPP_SHCHC_synthase Thi 99.5 3E-14 6.5E-19 141.5 11.2 113 197-331 49-174 (175)
79 cd03375 TPP_OGFOR Thiamine pyr 99.5 2.8E-13 6E-18 136.7 11.8 113 199-332 51-184 (193)
80 COG0028 IlvB Thiamine pyrophos 99.4 2.7E-13 5.8E-18 156.7 11.1 117 197-334 406-533 (550)
81 PRK12474 hypothetical protein; 99.4 2.9E-13 6.4E-18 156.6 11.0 113 198-331 388-518 (518)
82 TIGR02418 acolac_catab acetola 99.4 4.6E-13 1E-17 155.7 12.1 117 197-334 406-532 (539)
83 PRK06154 hypothetical protein; 99.4 5E-13 1.1E-17 156.1 11.7 118 197-334 429-557 (565)
84 PRK07586 hypothetical protein; 99.4 5.3E-13 1.1E-17 154.4 11.6 113 198-331 384-514 (514)
85 PRK08266 hypothetical protein; 99.4 4.6E-13 1E-17 155.9 11.0 117 198-335 401-528 (542)
86 TIGR01504 glyox_carbo_lig glyo 99.4 3.7E-13 8E-18 157.9 10.2 117 197-333 416-556 (588)
87 PRK09124 pyruvate dehydrogenas 99.4 8.6E-13 1.9E-17 154.6 12.9 116 197-333 406-531 (574)
88 PRK06965 acetolactate synthase 99.4 7.8E-13 1.7E-17 155.3 12.2 118 197-334 435-564 (587)
89 cd03376 TPP_PFOR_porB_like Thi 99.4 1.3E-12 2.8E-17 135.7 12.4 118 197-332 60-200 (235)
90 PRK07524 hypothetical protein; 99.4 8.7E-13 1.9E-17 153.3 12.1 119 197-336 405-533 (535)
91 TIGR03393 indolpyr_decarb indo 99.4 7.9E-13 1.7E-17 153.8 11.7 115 197-332 402-527 (539)
92 PRK09107 acetolactate synthase 99.4 6.5E-13 1.4E-17 156.1 11.0 116 197-333 428-555 (595)
93 PRK07064 hypothetical protein; 99.4 6.2E-13 1.3E-17 154.9 10.5 115 198-333 404-529 (544)
94 PRK08979 acetolactate synthase 99.4 7.7E-13 1.7E-17 154.9 10.7 117 197-333 419-547 (572)
95 PRK06048 acetolactate synthase 99.4 1.3E-12 2.9E-17 152.6 12.1 116 197-333 412-539 (561)
96 PRK06546 pyruvate dehydrogenas 99.4 1.7E-12 3.6E-17 152.2 12.9 117 197-334 406-532 (578)
97 PRK08978 acetolactate synthase 99.4 1.3E-12 2.9E-17 152.2 12.1 115 198-333 400-526 (548)
98 PRK05858 hypothetical protein; 99.4 1.2E-12 2.6E-17 152.4 11.6 117 197-334 405-532 (542)
99 PRK08611 pyruvate oxidase; Pro 99.4 1.2E-12 2.6E-17 153.3 11.7 116 198-334 407-532 (576)
100 PRK06112 acetolactate synthase 99.4 1.9E-12 4.2E-17 151.8 13.4 117 197-334 435-562 (578)
101 PRK07092 benzoylformate decarb 99.4 1.1E-12 2.5E-17 152.2 11.3 113 198-331 406-529 (530)
102 PRK06456 acetolactate synthase 99.4 9.5E-13 2.1E-17 154.2 10.6 116 197-333 419-546 (572)
103 PRK06466 acetolactate synthase 99.4 1.6E-12 3.5E-17 152.3 12.5 117 197-333 421-549 (574)
104 PRK07979 acetolactate synthase 99.4 1.6E-12 3.6E-17 152.2 12.5 117 197-333 419-549 (574)
105 PLN02573 pyruvate decarboxylas 99.4 1.6E-12 3.5E-17 152.2 12.3 116 197-332 426-552 (578)
106 PRK08322 acetolactate synthase 99.4 2E-12 4.3E-17 150.8 12.9 117 197-334 404-530 (547)
107 PLN02470 acetolactate synthase 99.4 1.1E-12 2.4E-17 154.0 10.6 116 197-333 424-558 (585)
108 PRK08527 acetolactate synthase 99.4 1.8E-12 3.9E-17 151.5 12.3 117 197-334 412-540 (563)
109 PRK06457 pyruvate dehydrogenas 99.4 1.6E-12 3.5E-17 151.5 11.6 117 197-333 394-520 (549)
110 PRK08199 thiamine pyrophosphat 99.4 1.4E-12 2.9E-17 152.4 10.7 116 198-334 414-540 (557)
111 TIGR02720 pyruv_oxi_spxB pyruv 99.4 2.2E-12 4.8E-17 151.1 12.4 116 197-333 406-533 (575)
112 PRK11269 glyoxylate carboligas 99.4 1.2E-12 2.6E-17 153.9 10.1 117 197-333 417-557 (591)
113 PRK08617 acetolactate synthase 99.4 1.5E-12 3.2E-17 152.0 10.8 117 197-334 412-538 (552)
114 TIGR03457 sulphoacet_xsc sulfo 99.4 2E-12 4.3E-17 151.7 12.0 119 197-335 428-560 (579)
115 PRK07418 acetolactate synthase 99.4 1.6E-12 3.4E-17 153.6 11.1 116 197-333 432-560 (616)
116 PRK07710 acetolactate synthase 99.4 1.4E-12 3E-17 152.8 10.6 116 197-333 422-549 (571)
117 PRK08273 thiamine pyrophosphat 99.4 2.6E-12 5.5E-17 151.2 12.4 117 197-334 413-548 (597)
118 CHL00099 ilvB acetohydroxyacid 99.4 3.6E-12 7.7E-17 149.7 13.2 116 197-333 428-556 (585)
119 PRK06882 acetolactate synthase 99.4 3.5E-12 7.6E-17 149.5 12.8 118 197-334 419-548 (574)
120 PRK06725 acetolactate synthase 99.3 2.6E-12 5.7E-17 150.2 11.3 116 197-333 420-546 (570)
121 PRK08155 acetolactate synthase 99.3 3.1E-12 6.8E-17 149.6 11.3 116 197-333 417-544 (564)
122 TIGR00118 acolac_lg acetolacta 99.3 3.3E-12 7.2E-17 149.3 11.3 116 197-333 410-537 (558)
123 PRK06276 acetolactate synthase 99.3 3.6E-12 7.8E-17 149.7 11.6 116 197-333 417-544 (586)
124 PRK09259 putative oxalyl-CoA d 99.3 5E-12 1.1E-16 148.0 12.7 116 197-334 422-548 (569)
125 TIGR03254 oxalate_oxc oxalyl-C 99.3 5.4E-12 1.2E-16 147.3 12.9 116 197-334 415-540 (554)
126 PRK07282 acetolactate synthase 99.3 3.6E-12 7.7E-17 149.1 10.7 115 197-333 416-542 (566)
127 PRK07525 sulfoacetaldehyde ace 99.3 5.7E-12 1.2E-16 148.1 11.9 119 197-335 433-565 (588)
128 TIGR03394 indol_phenyl_DC indo 99.3 6.2E-12 1.4E-16 146.0 12.0 115 198-333 402-522 (535)
129 TIGR03336 IOR_alpha indolepyru 99.3 6.1E-11 1.3E-15 139.3 20.3 231 490-746 50-334 (595)
130 cd02018 TPP_PFOR Thiamine pyro 99.3 8.4E-12 1.8E-16 129.8 11.6 122 197-332 62-203 (237)
131 PRK07789 acetolactate synthase 99.3 5.2E-12 1.1E-16 149.0 11.2 117 197-333 445-577 (612)
132 PRK07449 2-succinyl-5-enolpyru 99.3 4E-12 8.7E-17 148.9 9.8 114 198-333 424-550 (568)
133 PRK08327 acetolactate synthase 99.3 6.8E-12 1.5E-16 146.8 10.6 118 197-332 428-567 (569)
134 PRK09628 oorB 2-oxoglutarate-a 99.3 1.4E-11 3E-16 130.4 11.3 113 200-332 69-201 (277)
135 PRK07119 2-ketoisovalerate fer 99.3 2.7E-10 5.9E-15 125.1 20.2 203 485-699 48-307 (352)
136 PRK05778 2-oxoglutarate ferred 99.2 3.3E-11 7.2E-16 128.9 11.5 114 199-332 70-203 (301)
137 PRK11869 2-oxoacid ferredoxin 99.2 3.5E-11 7.6E-16 127.2 10.7 116 199-332 60-193 (280)
138 PRK11866 2-oxoacid ferredoxin 99.2 5.6E-11 1.2E-15 125.8 11.8 117 198-332 58-192 (279)
139 COG3961 Pyruvate decarboxylase 99.2 5.5E-11 1.2E-15 131.1 9.7 116 198-333 410-536 (557)
140 PRK11867 2-oxoglutarate ferred 99.2 1.1E-10 2.3E-15 124.5 11.7 116 199-332 69-202 (286)
141 cd06586 TPP_enzyme_PYR Pyrimid 99.2 2.2E-10 4.8E-15 110.7 12.9 119 483-605 32-154 (154)
142 TIGR02177 PorB_KorB 2-oxoacid: 99.2 1.1E-10 2.5E-15 123.8 10.7 115 199-332 53-186 (287)
143 PRK08659 2-oxoglutarate ferred 99.1 2.8E-09 6.1E-14 118.1 20.1 202 486-699 49-334 (376)
144 TIGR03336 IOR_alpha indolepyru 99.1 1.9E-10 4.1E-15 135.2 10.8 116 198-331 402-529 (595)
145 KOG0451 Predicted 2-oxoglutara 99.1 4E-08 8.6E-13 108.1 26.8 538 118-703 191-864 (913)
146 PRK11864 2-ketoisovalerate fer 99.1 1.5E-09 3.3E-14 115.5 13.7 125 195-332 65-207 (300)
147 PLN02980 2-oxoglutarate decarb 99.0 9.5E-10 2.1E-14 142.1 10.6 115 197-333 757-890 (1655)
148 PRK09622 porA pyruvate flavodo 99.0 2E-08 4.4E-13 112.5 19.7 201 494-703 64-332 (407)
149 PRK09627 oorA 2-oxoglutarate-a 99.0 2.1E-08 4.6E-13 110.9 19.0 199 494-700 55-336 (375)
150 COG3962 Acetolactate synthase 98.9 7.3E-09 1.6E-13 112.4 9.4 120 193-333 438-576 (617)
151 KOG4166 Thiamine pyrophosphate 98.8 5.8E-09 1.3E-13 111.8 8.0 119 197-336 522-651 (675)
152 KOG1184 Thiamine pyrophosphate 98.8 1.1E-08 2.4E-13 112.7 8.8 119 194-332 410-539 (561)
153 KOG1185 Thiamine pyrophosphate 98.8 3.7E-08 8.1E-13 107.8 12.1 126 185-333 419-561 (571)
154 PRK08366 vorA 2-ketoisovalerat 98.6 1.4E-06 3.1E-11 96.9 19.2 202 493-703 56-324 (390)
155 TIGR03710 OAFO_sf 2-oxoacid:ac 98.6 1.4E-06 3E-11 101.8 19.2 206 486-701 237-526 (562)
156 PF03894 XFP: D-xylulose 5-pho 98.6 1.5E-06 3.3E-11 84.4 14.9 150 442-593 2-178 (179)
157 PRK08367 porA pyruvate ferredo 98.6 2E-06 4.4E-11 95.9 17.8 203 493-704 57-327 (394)
158 PRK11865 pyruvate ferredoxin o 98.5 9.8E-07 2.1E-11 94.3 14.1 123 196-332 66-211 (299)
159 KOG0450 2-oxoglutarate dehydro 98.4 0.00042 9.2E-09 79.1 29.0 465 204-708 379-965 (1017)
160 COG0567 SucA 2-oxoglutarate de 98.3 9.5E-05 2.1E-09 87.7 25.1 543 113-703 208-854 (906)
161 COG3960 Glyoxylate carboligase 98.1 1.3E-06 2.8E-11 91.6 3.4 118 197-334 417-558 (592)
162 TIGR02176 pyruv_ox_red pyruvat 98.0 0.00019 4.2E-09 90.2 19.2 204 493-703 58-330 (1165)
163 COG4231 Indolepyruvate ferredo 97.6 0.0015 3.3E-08 75.0 16.0 202 486-701 58-307 (640)
164 COG1013 PorB Pyruvate:ferredox 97.5 0.0008 1.7E-08 72.2 12.1 115 200-332 71-204 (294)
165 COG4231 Indolepyruvate ferredo 97.5 0.0003 6.5E-09 80.6 8.4 115 199-331 428-553 (640)
166 COG0674 PorA Pyruvate:ferredox 97.4 0.0062 1.3E-07 67.6 18.2 180 493-679 54-302 (365)
167 COG1165 MenD 2-succinyl-6-hydr 97.2 0.001 2.2E-08 75.3 8.2 107 205-333 428-547 (566)
168 TIGR03297 Ppyr-DeCO2ase phosph 97.1 0.22 4.8E-06 55.3 25.3 113 485-603 214-333 (361)
169 PF01855 POR_N: Pyruvate flavo 96.8 0.0054 1.2E-07 63.7 8.9 111 490-604 40-153 (230)
170 cd07035 TPP_PYR_POX_like Pyrim 96.7 0.016 3.4E-07 56.1 10.9 115 486-605 35-155 (155)
171 cd07034 TPP_PYR_PFOR_IOR-alpha 96.4 0.035 7.6E-07 54.0 11.6 114 485-604 41-159 (160)
172 PF02776 TPP_enzyme_N: Thiamin 96.3 0.025 5.3E-07 56.0 9.7 117 486-606 40-162 (172)
173 cd03377 TPP_PFOR_PNO Thiamine 96.2 0.033 7.1E-07 61.2 10.7 98 231-332 151-267 (365)
174 PRK09193 indolepyruvate ferred 95.8 0.023 5E-07 70.9 8.3 116 198-330 480-615 (1165)
175 PRK13030 2-oxoacid ferredoxin 95.8 0.024 5.3E-07 70.9 8.5 114 200-330 469-601 (1159)
176 PRK13030 2-oxoacid ferredoxin 95.6 0.2 4.4E-06 62.9 15.6 204 487-701 75-342 (1159)
177 TIGR03845 sulfopyru_alph sulfo 95.3 0.1 2.2E-06 51.0 9.5 108 492-606 40-155 (157)
178 PRK13029 2-oxoacid ferredoxin 95.0 0.066 1.4E-06 66.9 8.7 114 200-330 496-629 (1186)
179 cd07037 TPP_PYR_MenD Pyrimidin 94.9 0.21 4.6E-06 49.1 10.3 114 487-604 37-161 (162)
180 cd07033 TPP_PYR_DXS_TK_like Py 94.6 0.34 7.3E-06 47.2 10.9 76 246-329 75-154 (156)
181 cd07039 TPP_PYR_POX Pyrimidine 94.5 0.48 1E-05 46.6 11.7 115 487-606 40-159 (164)
182 PRK09193 indolepyruvate ferred 94.3 0.6 1.3E-05 58.8 14.6 200 486-701 82-350 (1165)
183 cd01460 vWA_midasin VWA_Midasi 93.7 0.41 8.8E-06 50.9 10.0 84 233-319 166-257 (266)
184 PRK07092 benzoylformate decarb 93.5 0.47 1E-05 55.5 11.2 117 486-606 49-171 (530)
185 cd07036 TPP_PYR_E1-PDHc-beta_l 93.2 1.1 2.3E-05 44.4 11.5 99 204-328 56-164 (167)
186 TIGR02176 pyruv_ox_red pyruvat 93.0 0.37 8E-06 61.3 9.9 97 232-332 952-1067(1165)
187 PRK13029 2-oxoacid ferredoxin 92.5 1.7 3.7E-05 54.8 14.4 199 487-701 86-353 (1186)
188 cd02018 TPP_PFOR Thiamine pyro 92.2 5.6 0.00012 41.6 15.9 118 484-603 51-200 (237)
189 TIGR02418 acolac_catab acetola 92.2 0.91 2E-05 53.3 11.2 114 487-606 38-158 (539)
190 PRK05858 hypothetical protein; 92.1 1.1 2.4E-05 52.6 11.9 116 486-606 43-164 (542)
191 PRK08199 thiamine pyrophosphat 91.8 1.1 2.5E-05 52.7 11.4 116 486-606 47-168 (557)
192 PF09363 XFP_C: XFP C-terminal 91.8 1.2 2.6E-05 45.0 9.7 113 634-746 34-160 (203)
193 PRK06466 acetolactate synthase 91.6 0.78 1.7E-05 54.2 9.8 116 486-606 43-164 (574)
194 PRK07586 hypothetical protein; 91.5 1.4 3E-05 51.3 11.7 116 487-607 41-162 (514)
195 PRK08155 acetolactate synthase 91.3 1.1 2.3E-05 53.0 10.5 115 486-606 52-173 (564)
196 PRK07064 hypothetical protein; 91.2 1.6 3.5E-05 51.1 11.9 116 487-606 43-166 (544)
197 PRK07524 hypothetical protein; 91.2 1.5 3.3E-05 51.4 11.6 116 487-606 41-164 (535)
198 PRK08322 acetolactate synthase 91.2 1.4 3E-05 51.8 11.3 115 486-606 39-160 (547)
199 PRK06112 acetolactate synthase 91.2 0.96 2.1E-05 53.5 10.0 116 486-606 50-171 (578)
200 cd07038 TPP_PYR_PDC_IPDC_like 90.8 2.7 5.8E-05 41.2 11.2 115 487-605 37-162 (162)
201 PRK08978 acetolactate synthase 90.8 1.3 2.9E-05 52.0 10.6 114 487-606 40-160 (548)
202 PF02779 Transket_pyr: Transke 90.7 5.6 0.00012 39.5 13.5 105 204-330 60-171 (178)
203 PRK08617 acetolactate synthase 90.6 1 2.2E-05 52.9 9.5 115 486-606 43-164 (552)
204 PRK11269 glyoxylate carboligas 90.6 1.9 4.1E-05 51.2 11.8 115 486-606 43-165 (591)
205 cd06586 TPP_enzyme_PYR Pyrimid 90.6 2.1 4.6E-05 40.8 10.1 85 239-329 68-152 (154)
206 PRK07710 acetolactate synthase 90.5 1.5 3.2E-05 51.9 10.7 116 485-606 53-175 (571)
207 TIGR00118 acolac_lg acetolacta 90.5 2 4.3E-05 50.6 11.8 115 487-606 41-161 (558)
208 PRK06456 acetolactate synthase 90.5 1.7 3.8E-05 51.3 11.3 114 487-606 45-165 (572)
209 TIGR01504 glyox_carbo_lig glyo 90.5 2.2 4.7E-05 50.7 12.1 116 487-607 43-165 (588)
210 cd02001 TPP_ComE_PpyrDC Thiami 90.3 6 0.00013 38.5 13.1 115 483-603 33-152 (157)
211 PRK08266 hypothetical protein; 90.3 1.3 2.7E-05 52.1 9.8 117 486-606 44-168 (542)
212 cd03376 TPP_PFOR_porB_like Thi 90.3 10 0.00022 39.5 15.6 89 513-603 81-197 (235)
213 cd02004 TPP_BZL_OCoD_HPCL Thia 90.1 4.6 9.9E-05 39.7 12.2 118 483-603 36-169 (172)
214 PRK07979 acetolactate synthase 90.0 2 4.3E-05 50.9 11.3 115 487-607 44-165 (574)
215 PRK07525 sulfoacetaldehyde ace 89.7 2.4 5.2E-05 50.3 11.7 116 486-607 44-165 (588)
216 PRK06276 acetolactate synthase 89.7 2.2 4.8E-05 50.6 11.3 115 487-606 40-160 (586)
217 PRK06457 pyruvate dehydrogenas 89.7 2 4.4E-05 50.5 10.9 116 486-606 40-160 (549)
218 PRK09107 acetolactate synthase 89.4 2.5 5.4E-05 50.3 11.4 116 486-607 50-172 (595)
219 PRK08611 pyruvate oxidase; Pro 89.3 2.4 5.1E-05 50.3 11.2 116 486-606 44-164 (576)
220 PRK09124 pyruvate dehydrogenas 89.3 2.6 5.7E-05 49.8 11.5 113 487-606 43-162 (574)
221 cd02010 TPP_ALS Thiamine pyrop 89.2 16 0.00034 36.3 15.3 118 483-604 36-168 (177)
222 cd02014 TPP_POX Thiamine pyrop 89.2 14 0.0003 36.6 15.0 118 483-603 39-170 (178)
223 PRK07449 2-succinyl-5-enolpyru 89.1 1.3 2.8E-05 52.3 8.8 116 487-606 49-174 (568)
224 PRK07282 acetolactate synthase 89.0 2.7 5.9E-05 49.7 11.3 115 486-606 49-170 (566)
225 PRK06965 acetolactate synthase 88.8 2.8 6E-05 49.8 11.3 115 486-606 60-181 (587)
226 PRK07789 acetolactate synthase 88.7 3.3 7.2E-05 49.4 11.8 115 486-606 70-191 (612)
227 TIGR03457 sulphoacet_xsc sulfo 88.4 3.9 8.4E-05 48.5 12.1 117 486-607 40-161 (579)
228 PRK11864 2-ketoisovalerate fer 88.4 10 0.00023 41.0 14.2 109 496-605 72-206 (300)
229 TIGR00173 menD 2-succinyl-5-en 88.1 2.2 4.7E-05 48.6 9.5 116 487-607 40-167 (432)
230 PRK11866 2-oxoacid ferredoxin 88.0 11 0.00023 40.5 13.9 105 496-603 62-189 (279)
231 PRK08527 acetolactate synthase 88.0 3.6 7.8E-05 48.6 11.5 114 487-606 43-163 (563)
232 PRK06882 acetolactate synthase 88.0 3.6 7.7E-05 48.7 11.5 115 487-606 44-164 (574)
233 TIGR03254 oxalate_oxc oxalyl-C 88.0 2.3 4.9E-05 50.1 9.8 116 487-606 42-164 (554)
234 cd02009 TPP_SHCHC_synthase Thi 87.8 9.8 0.00021 37.6 12.8 115 484-603 40-172 (175)
235 TIGR02720 pyruv_oxi_spxB pyruv 87.8 2.4 5.2E-05 50.2 9.9 116 486-607 39-160 (575)
236 PLN02683 pyruvate dehydrogenas 87.8 4.9 0.00011 44.7 11.6 107 196-329 77-195 (356)
237 TIGR02177 PorB_KorB 2-oxoacid: 87.7 15 0.00033 39.5 14.9 147 440-604 12-184 (287)
238 PLN02470 acetolactate synthase 87.6 3.7 8E-05 48.7 11.3 115 486-606 52-173 (585)
239 PRK06048 acetolactate synthase 87.4 3.6 7.8E-05 48.5 11.0 115 486-606 46-167 (561)
240 PRK09259 putative oxalyl-CoA d 87.2 3.8 8.2E-05 48.5 11.0 117 486-606 48-171 (569)
241 PRK06725 acetolactate synthase 87.0 4.4 9.5E-05 48.0 11.4 116 486-607 53-175 (570)
242 TIGR03845 sulfopyru_alph sulfo 86.7 10 0.00022 37.1 11.9 107 200-330 42-153 (157)
243 PRK05899 transketolase; Review 86.6 6.3 0.00014 47.2 12.5 84 238-329 397-483 (624)
244 PRK06546 pyruvate dehydrogenas 86.5 4.4 9.5E-05 48.1 11.0 115 486-606 42-162 (578)
245 PRK08979 acetolactate synthase 86.4 3.1 6.8E-05 49.2 9.7 114 486-606 43-164 (572)
246 PRK11865 pyruvate ferredoxin o 86.3 8.9 0.00019 41.5 12.2 106 496-604 72-209 (299)
247 PRK12474 hypothetical protein; 86.2 5.3 0.00012 46.6 11.4 115 487-607 45-166 (518)
248 PRK08327 acetolactate synthase 86.2 3.1 6.7E-05 49.2 9.5 116 487-606 52-181 (569)
249 PF02776 TPP_enzyme_N: Thiamin 86.1 8.3 0.00018 37.9 11.2 95 232-331 64-161 (172)
250 PRK07418 acetolactate synthase 85.7 6.1 0.00013 47.2 11.8 115 486-606 61-182 (616)
251 CHL00099 ilvB acetohydroxyacid 85.7 3.1 6.7E-05 49.4 9.3 114 487-606 53-173 (585)
252 TIGR00204 dxs 1-deoxy-D-xylulo 85.5 8.9 0.00019 45.9 13.0 110 196-330 355-468 (617)
253 TIGR00232 tktlase_bact transke 85.5 6.9 0.00015 47.1 12.1 84 239-330 427-513 (653)
254 PRK12571 1-deoxy-D-xylulose-5- 84.7 10 0.00022 45.6 12.9 110 196-330 364-477 (641)
255 cd07035 TPP_PYR_POX_like Pyrim 84.7 16 0.00035 34.9 12.3 87 234-329 62-153 (155)
256 smart00861 Transket_pyr Transk 84.4 9.5 0.00021 37.3 10.7 76 247-329 86-164 (168)
257 PRK11892 pyruvate dehydrogenas 84.4 6.9 0.00015 45.0 11.0 98 204-328 201-309 (464)
258 PLN02225 1-deoxy-D-xylulose-5- 83.6 7.4 0.00016 46.8 11.0 110 196-330 426-539 (701)
259 PF02775 TPP_enzyme_C: Thiamin 83.6 20 0.00043 34.4 12.3 116 483-602 16-152 (153)
260 PRK09212 pyruvate dehydrogenas 83.4 8.2 0.00018 42.4 10.7 60 262-329 112-172 (327)
261 PRK05444 1-deoxy-D-xylulose-5- 83.2 12 0.00026 44.5 12.7 109 196-329 324-436 (580)
262 cd02003 TPP_IolD Thiamine pyro 83.1 14 0.0003 37.5 11.6 114 483-603 36-181 (205)
263 PRK08273 thiamine pyrophosphat 83.0 6 0.00013 47.1 10.1 114 486-606 43-164 (597)
264 COG3958 Transketolase, C-termi 82.9 12 0.00025 40.2 10.8 118 185-335 47-169 (312)
265 cd00568 TPP_enzymes Thiamine p 82.3 8.6 0.00019 37.1 9.4 100 499-603 52-166 (168)
266 PRK08659 2-oxoglutarate ferred 81.7 12 0.00025 42.1 11.2 108 204-333 60-173 (376)
267 cd02013 TPP_Xsc_like Thiamine 81.7 11 0.00023 38.1 10.1 118 483-603 41-176 (196)
268 PRK12315 1-deoxy-D-xylulose-5- 81.5 13 0.00028 44.1 12.1 109 196-329 323-434 (581)
269 PLN02582 1-deoxy-D-xylulose-5- 81.2 17 0.00038 43.8 13.0 105 204-335 410-517 (677)
270 PRK11867 2-oxoglutarate ferred 81.2 51 0.0011 35.5 15.4 103 498-603 74-199 (286)
271 cd02012 TPP_TK Thiamine pyroph 80.9 15 0.00032 38.7 11.1 102 499-603 111-224 (255)
272 PLN02573 pyruvate decarboxylas 80.8 6.8 0.00015 46.5 9.5 116 487-607 56-183 (578)
273 cd03375 TPP_OGFOR Thiamine pyr 80.8 19 0.00041 36.3 11.5 101 500-603 58-181 (193)
274 cd07034 TPP_PYR_PFOR_IOR-alpha 80.8 18 0.00038 34.9 10.9 88 233-330 67-159 (160)
275 cd02015 TPP_AHAS Thiamine pyro 80.6 27 0.00059 34.7 12.5 117 483-603 38-171 (186)
276 PLN02980 2-oxoglutarate decarb 80.3 5.9 0.00013 52.8 9.5 115 486-605 340-466 (1655)
277 COG4032 Predicted thiamine-pyr 79.5 4 8.7E-05 38.8 5.4 103 494-604 50-162 (172)
278 PTZ00182 3-methyl-2-oxobutanat 79.3 20 0.00043 39.9 11.9 59 262-328 143-202 (355)
279 PLN02234 1-deoxy-D-xylulose-5- 79.0 22 0.00048 42.6 12.8 92 233-336 425-519 (641)
280 cd07039 TPP_PYR_POX Pyrimidine 78.7 36 0.00078 33.3 12.3 90 232-331 65-158 (164)
281 CHL00144 odpB pyruvate dehydro 78.3 15 0.00033 40.3 10.5 39 285-328 132-171 (327)
282 cd02006 TPP_Gcl Thiamine pyrop 78.0 17 0.00038 36.7 10.2 117 483-603 45-191 (202)
283 PTZ00089 transketolase; Provis 77.8 21 0.00045 43.1 12.3 103 204-330 415-520 (661)
284 cd02008 TPP_IOR_alpha Thiamine 77.5 19 0.00041 35.7 10.1 101 500-603 58-174 (178)
285 cd07037 TPP_PYR_MenD Pyrimidin 77.3 20 0.00043 35.2 10.0 92 233-330 63-161 (162)
286 cd03371 TPP_PpyrDC Thiamine py 77.2 65 0.0014 32.3 14.0 115 484-603 40-160 (188)
287 PRK05778 2-oxoglutarate ferred 76.4 18 0.0004 39.2 10.3 102 499-603 76-200 (301)
288 TIGR03394 indol_phenyl_DC indo 75.9 15 0.00032 43.2 10.2 117 487-607 40-166 (535)
289 TIGR03846 sulfopy_beta sulfopy 75.9 52 0.0011 32.8 12.8 112 484-603 34-153 (181)
290 COG1071 AcoA Pyruvate/2-oxoglu 75.3 17 0.00036 40.3 9.7 75 527-603 177-258 (358)
291 PRK06154 hypothetical protein; 74.4 23 0.0005 41.9 11.4 113 486-606 55-176 (565)
292 PRK11869 2-oxoacid ferredoxin 74.3 21 0.00046 38.3 10.0 103 498-603 65-190 (280)
293 PRK07119 2-ketoisovalerate fer 73.0 29 0.00062 38.6 11.0 106 204-333 60-173 (352)
294 PRK12754 transketolase; Review 72.6 31 0.00067 41.6 11.9 83 240-330 434-519 (663)
295 PRK12753 transketolase; Review 72.4 37 0.00081 41.0 12.6 84 239-330 433-519 (663)
296 PF01855 POR_N: Pyruvate flavo 72.1 14 0.00031 38.4 7.9 107 204-334 48-157 (230)
297 cd07038 TPP_PYR_PDC_IPDC_like 72.1 49 0.0011 32.3 11.3 91 234-329 63-160 (162)
298 PLN02790 transketolase 71.6 37 0.0008 41.0 12.3 76 247-329 431-509 (654)
299 PRK09628 oorB 2-oxoglutarate-a 71.6 78 0.0017 34.0 13.5 104 497-604 72-199 (277)
300 TIGR03181 PDH_E1_alph_x pyruva 71.4 21 0.00045 39.4 9.5 87 513-603 145-243 (341)
301 cd02007 TPP_DXS Thiamine pyrop 69.9 58 0.0013 32.9 11.6 97 499-603 81-187 (195)
302 cd02002 TPP_BFDC Thiamine pyro 68.8 36 0.00079 33.4 9.8 114 484-603 39-176 (178)
303 TIGR03710 OAFO_sf 2-oxoacid:ac 67.2 27 0.00059 41.3 9.8 109 204-334 249-363 (562)
304 TIGR03393 indolpyr_decarb indo 65.1 29 0.00062 40.8 9.5 115 487-607 41-167 (539)
305 CHL00149 odpA pyruvate dehydro 64.8 28 0.00061 38.5 8.8 87 513-603 158-256 (341)
306 PRK06163 hypothetical protein; 64.8 1.3E+02 0.0028 30.6 13.0 115 484-604 49-171 (202)
307 COG0028 IlvB Thiamine pyrophos 60.8 50 0.0011 39.0 10.4 116 485-606 39-161 (550)
308 cd03372 TPP_ComE Thiamine pyro 59.4 90 0.002 31.0 10.6 110 484-603 34-152 (179)
309 PRK09627 oorA 2-oxoglutarate-a 59.2 60 0.0013 36.4 10.2 108 204-333 59-172 (375)
310 PF00676 E1_dh: Dehydrogenase 57.3 35 0.00076 37.0 7.8 102 499-603 107-222 (300)
311 COG0021 TktA Transketolase [Ca 53.7 57 0.0012 38.7 8.9 77 248-331 441-520 (663)
312 PRK08366 vorA 2-ketoisovalerat 53.6 1.2E+02 0.0025 34.3 11.3 102 204-331 61-166 (390)
313 KOG1185 Thiamine pyrophosphate 52.3 36 0.00077 39.0 6.7 117 484-606 50-173 (571)
314 cd02005 TPP_PDC_IPDC Thiamine 51.7 80 0.0017 31.4 8.8 118 484-603 39-171 (183)
315 PF04273 DUF442: Putative phos 51.2 78 0.0017 29.0 7.8 81 247-332 15-96 (110)
316 PLN02269 Pyruvate dehydrogenas 50.3 98 0.0021 34.6 9.9 78 525-603 176-256 (362)
317 cd02000 TPP_E1_PDC_ADC_BCADC T 48.1 1E+02 0.0022 33.1 9.6 88 513-603 127-225 (293)
318 PLN02374 pyruvate dehydrogenas 45.6 86 0.0019 35.9 8.7 89 513-603 224-322 (433)
319 TIGR03182 PDH_E1_alph_y pyruva 44.3 1.2E+02 0.0026 33.0 9.4 88 513-603 133-231 (315)
320 cd00860 ThrRS_anticodon ThrRS 43.3 1E+02 0.0022 26.1 7.1 59 635-699 2-61 (91)
321 PF03129 HGTP_anticodon: Antic 40.8 94 0.002 26.8 6.5 57 636-698 1-61 (94)
322 PRK08367 porA pyruvate ferredo 40.7 1.7E+02 0.0038 33.0 10.1 103 204-332 62-170 (394)
323 PF13519 VWA_2: von Willebrand 39.7 84 0.0018 29.6 6.6 73 231-316 99-171 (172)
324 PRK09622 porA pyruvate flavodo 39.2 2E+02 0.0044 32.5 10.5 104 204-332 68-176 (407)
325 KOG1145 Mitochondrial translat 38.5 2.2E+02 0.0048 33.5 10.3 100 230-338 225-344 (683)
326 cd01455 vWA_F11C1-5a_type Von 35.1 3.4E+02 0.0074 27.5 10.2 74 231-319 111-187 (191)
327 cd00858 GlyRS_anticodon GlyRS 35.0 1.4E+02 0.003 27.4 7.0 58 635-699 27-87 (121)
328 cd03028 GRX_PICOT_like Glutare 34.2 1.8E+02 0.0038 25.2 7.2 37 634-670 7-47 (90)
329 KOG0225 Pyruvate dehydrogenase 33.8 90 0.0019 34.2 6.0 75 525-603 203-284 (394)
330 PF04430 DUF498: Protein of un 32.8 36 0.00077 31.0 2.6 35 634-668 53-88 (110)
331 COG1154 Dxs Deoxyxylulose-5-ph 32.5 4.1E+02 0.009 31.6 11.4 79 252-339 401-481 (627)
332 cd02017 TPP_E1_EcPDC_like Thia 32.4 4.2E+02 0.0092 29.9 11.3 51 525-578 163-218 (386)
333 PRK10329 glutaredoxin-like pro 31.3 1.8E+02 0.0038 24.9 6.5 62 637-704 3-64 (81)
334 cd00032 CASc Caspase, interleu 30.8 1.5E+02 0.0033 30.9 7.2 56 262-319 10-68 (243)
335 TIGR00173 menD 2-succinyl-5-en 30.7 1.9E+02 0.004 32.9 8.5 95 232-332 65-166 (432)
336 COG0674 PorA Pyruvate:ferredox 30.1 3.3E+02 0.0071 30.4 10.1 107 203-330 58-164 (365)
337 PF00456 Transketolase_N: Tran 30.0 1.2E+02 0.0026 33.5 6.5 76 525-603 159-240 (332)
338 PF03853 YjeF_N: YjeF-related 29.6 93 0.002 30.5 5.1 44 635-678 27-70 (169)
339 COG4981 Enoyl reductase domain 29.4 1.3E+02 0.0027 35.2 6.5 53 287-341 140-195 (717)
340 cd03027 GRX_DEP Glutaredoxin ( 29.4 2.1E+02 0.0046 23.3 6.6 64 636-704 2-65 (73)
341 cd03418 GRX_GRXb_1_3_like Glut 29.1 2.5E+02 0.0055 22.7 7.0 64 637-705 2-66 (75)
342 PF07279 DUF1442: Protein of u 29.0 3.8E+02 0.0082 27.8 9.3 97 202-331 52-149 (218)
343 PRK13683 hypothetical protein; 28.5 70 0.0015 27.9 3.3 42 290-334 10-51 (87)
344 TIGR00365 monothiol glutaredox 28.2 2.4E+02 0.0051 25.0 7.0 37 634-670 11-51 (97)
345 smart00115 CASc Caspase, inter 27.9 2.1E+02 0.0046 29.8 7.7 72 262-337 9-85 (241)
346 KOG1201 Hydroxysteroid 17-beta 27.3 8.3E+02 0.018 26.6 12.9 83 231-330 37-120 (300)
347 cd01453 vWA_transcription_fact 26.7 4.8E+02 0.01 25.8 9.8 71 231-317 107-178 (183)
348 PF00070 Pyr_redox: Pyridine n 25.1 1.1E+02 0.0023 25.7 4.1 40 637-679 2-43 (80)
349 cd00859 HisRS_anticodon HisRS 25.0 1.3E+02 0.0029 24.9 4.7 34 635-668 2-36 (91)
350 cd05125 Mth938_2P1-like Mth938 24.5 59 0.0013 30.0 2.5 35 634-668 54-89 (114)
351 PF12500 TRSP: TRSP domain C t 22.8 1.3E+02 0.0028 29.4 4.5 33 634-666 57-89 (155)
352 cd00738 HGTP_anticodon HGTP an 22.6 2.8E+02 0.0061 23.4 6.4 57 636-698 3-63 (94)
353 PF10740 DUF2529: Protein of u 22.6 2.7E+02 0.0059 27.7 6.7 83 582-667 25-115 (172)
354 PF00731 AIRC: AIR carboxylase 22.4 2.6E+02 0.0056 27.2 6.5 30 636-665 2-32 (150)
355 PF03180 Lipoprotein_9: NLPA l 22.1 1.8E+02 0.0039 30.4 5.8 92 643-735 8-121 (237)
356 cd00248 Mth938-like Mth938-lik 22.0 64 0.0014 29.4 2.2 35 635-669 53-88 (109)
357 cd01452 VWA_26S_proteasome_sub 21.7 2.6E+02 0.0057 28.1 6.7 29 232-260 108-137 (187)
358 TIGR02189 GlrX-like_plant Glut 20.7 4.1E+02 0.0088 23.5 7.1 35 635-670 8-42 (99)
359 PRK13685 hypothetical protein; 20.6 7.7E+02 0.017 26.8 10.7 84 232-319 194-288 (326)
360 COG3380 Predicted NAD/FAD-depe 20.4 1.3E+02 0.0028 32.3 4.2 30 635-667 2-31 (331)
No 1
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-143 Score=1186.91 Aligned_cols=660 Identities=59% Similarity=0.962 Sum_probs=631.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCC
Q 004509 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (748)
Q Consensus 85 ~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~ 164 (748)
.++.+++++.||.++++++.+|++||||.+||++||..+||..+|++||+||+|+||||||||.||+++++|++++|+||
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcc
Q 004509 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (748)
Q Consensus 165 ~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (748)
. ++.|||++|||++|++||||++..+|||+.+||+||||++.|||||||+++++++||+|++++.|++|||++||||+|
T Consensus 83 ~-ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclm 161 (663)
T COG0021 83 D-LSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLM 161 (663)
T ss_pred C-CCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHh
Confidence 5 899999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCC
Q 004509 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKP 324 (748)
Q Consensus 245 eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P 324 (748)
||+++||+.+|++++|++||+|+|+|+++|++.+...+.+|+.+||++|||+++.++||| |+++|.+|+++|+...+||
T Consensus 162 EGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~-D~e~I~~Ai~~Ak~~~dkP 240 (663)
T COG0021 162 EGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGH-DLEAIDKAIEEAKASTDKP 240 (663)
T ss_pred cccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCC-CHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999777999 9999999999999877899
Q ss_pred EEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 004509 325 TLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKK 404 (748)
Q Consensus 325 ~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 404 (748)
++|+|+|++|+|.++++++.++||.||.++++++++++++|+.++|.||++++..|+...+++...+++|++.|.+|.++
T Consensus 241 tlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~ 320 (663)
T COG0021 241 TLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKK 320 (663)
T ss_pred eEEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999998899999999999999999999999888899999999999965668889999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC
Q 004509 405 YPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 484 (748)
Q Consensus 405 ~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~ 484 (748)
+|+++++|++++++++|..|...+|.+.......++|++++++|+.+++..|+++.+||||++|+++.+++..+|..+.|
T Consensus 321 ~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~ 400 (663)
T COG0021 321 YPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY 400 (663)
T ss_pred ChHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC
Confidence 99999999999999999999888998876545689999999999999999999999999999999998888788876689
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 485 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 485 p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
++|+|.+||+|++|.++++|||++|. ++||..||..|.+|++++||++|+|++||++|.|||++++|+||||||++|++
T Consensus 401 ~gr~i~~GVREf~M~AimNGialhGg-~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqL 479 (663)
T COG0021 401 AGRYIHFGVREFAMAAIMNGIALHGG-FIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQL 479 (663)
T ss_pred CCCeeEEeeHHHHHHHHHHhHHHhcC-ceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHH
Confidence 99999999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeCh
Q 004509 565 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 644 (748)
Q Consensus 565 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~ 644 (748)
+.||+|||+.|++|||++|++.+++.|+.+.++|++|+++|+++|.++.++.+.+..|+|++.+.+ +..+|++|||+|+
T Consensus 480 a~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l~~t~~~~~~kGaYvl~~~~-~~~pd~iliAtGS 558 (663)
T COG0021 480 ASLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKDSG-GEDPDVILIATGS 558 (663)
T ss_pred HHhhccCCceeEecCChHHHHHHHHHHHhcCCCCeEEEEecCCCCccCCCccccccCccEEEeecC-CCCCCEEEEeccc
Confidence 999999999999999999999999999987799999999999999998877778999999998852 1148999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhcCCccEEeeCcCCCCC
Q 004509 645 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 724 (748)
Q Consensus 645 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~~~~~~ig~d~f~~~G 724 (748)
+|++|++|++.|+++|+.++||+|+|+++||+|..+|+++|++.+...+|.+|.+...||.+|++.....||++.|+.||
T Consensus 559 EV~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g~~g~~ig~~~FG~Sa 638 (663)
T COG0021 559 EVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASA 638 (663)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcCCCCcEEeeccCcCCC
Confidence 99999999999998889999999999999999999999999998876569999999999999998778899999999999
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 725 PAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 725 ~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
+.++|+++||+|+|.|++++++++
T Consensus 639 p~~~l~~~fGft~e~vv~~~~~~l 662 (663)
T COG0021 639 PGDELFKEFGFTVENVVAKAKSLL 662 (663)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhh
Confidence 999999999999999999999875
No 2
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=1.1e-133 Score=1164.15 Aligned_cols=652 Identities=51% Similarity=0.865 Sum_probs=604.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCC
Q 004509 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (748)
Q Consensus 89 ~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~ 168 (748)
++++++||+++++|+.++++||+|++||++||+++||..+|++||+||+|++|||||+|+||++|++|+++++.||. ++
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~-~~ 83 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-LP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCC-CC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999982 49
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH
Q 004509 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (748)
Q Consensus 169 ~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (748)
.++|++||+++|.++|||++..+||++++||++|||++.|+|+|+|.|+++++||++++++.+++|||++||||++||.+
T Consensus 84 ~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12754 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHH
Confidence 99999999999999999998789999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEE-EccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004509 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-VKNGNTGYDDIRAAIKEAKAVTDKPTLI 327 (748)
Q Consensus 249 ~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~-v~dG~~D~~~l~~al~~a~~~~~~P~vI 327 (748)
|||+++|++++|+|||+|||||+++|+++++....+++.++|++|||++++ | ||| |+++|.+|+++|++..++|++|
T Consensus 164 ~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vv-DG~-D~~ai~~A~~~a~~~~~~Pt~I 241 (663)
T PRK12754 164 HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGI-DGH-DADSIKRAVEEARAVTDKPSLL 241 (663)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCeEEeeE-CCC-CHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999877789999999999999999 6 999 9999999999998646899999
Q ss_pred EEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHH
Q 004509 328 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 407 (748)
Q Consensus 328 ~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 407 (748)
+++|+||+|+++++++.+|||.+++++++++++++++|+.++|.||++++.+|+. .+++....++|++.+.+|.+.+|+
T Consensus 242 ~~~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~ 320 (663)
T PRK12754 242 MCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA-KEAGQAKESAWNEKFAAYAKAYPQ 320 (663)
T ss_pred EEEeeeccCccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHCHH
Confidence 9999999999999889999999999999999999999988889999999999977 677888899999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccCCCCC----CCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccC
Q 004509 408 EAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 483 (748)
Q Consensus 408 ~~~~~~~~l~~~~p~~~~~~~p~~~----~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~ 483 (748)
...++++.+++++|..|...+|.|. ...++.+||++++++|.++++.+|+++++++|+++|+++.+++.+.|++ +
T Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~-~ 399 (663)
T PRK12754 321 EAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-D 399 (663)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccc-c
Confidence 9999999899888988886666553 1234679999999999999999999999999999998877777788976 7
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 484 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
||+|||++||+||+|+++|+|||++|+ ++||++||++|++|+++|||++||+++||++|+||+|+++|+||+|||++||
T Consensus 400 ~p~r~i~~GIaE~~Mv~iaaGlA~~~G-~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEd 478 (663)
T PRK12754 400 AAGNYIHYGVREFGMTAIANGIALHGG-FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQ 478 (663)
T ss_pred CCCCeEeeccchhhHHHHHhhHHhcCC-CeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHH
Confidence 999999999999999999999999764 8999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccceeEEecCCCCCCCCEEEEE
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIG 641 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~~~~g~dvtlva 641 (748)
+++||+||||+|++|+|+.|++.+++.++++.++|+|||++|+++|.++... ...+.+|+|++.+.+ +++|++||+
T Consensus 479 la~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iia 556 (663)
T PRK12754 479 VASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCA--GQPELIFIA 556 (663)
T ss_pred HHHHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCccchhhhcccCcEEEEecC--CCCCEEEEE
Confidence 9999999999999999999999999999975589999999999998876422 245778888776531 125999999
Q ss_pred eChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhcCCccEEeeCcCC
Q 004509 642 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 721 (748)
Q Consensus 642 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~~~~~~ig~d~f~ 721 (748)
+|+||++|++|++.|+++||+++||||+|++|||++..+|++.+++......|++|++...||.++++.....+|+|.|+
T Consensus 557 tGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~~~~~~~igi~~FG 636 (663)
T PRK12754 557 TGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFG 636 (663)
T ss_pred ECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeecccccchhhhccCCCCEEEeCCCC
Confidence 99999999999999999999999999999999999999999999987752249999999999999987655679999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 722 ASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 722 ~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
.||++++|+++||+|+|+|+++++++|
T Consensus 637 ~Sg~~~~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 637 ESAPAELLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 3
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=8.2e-132 Score=1156.17 Aligned_cols=652 Identities=53% Similarity=0.887 Sum_probs=599.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCC
Q 004509 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (748)
Q Consensus 89 ~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~ 168 (748)
+++|++||+++++|+.++++||+|++||++||+++||+.+|++||+||+|++|||||||+||++|++|++++++||. ++
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~-~~ 83 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYD-LP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCC-CC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999982 38
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH
Q 004509 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (748)
Q Consensus 169 ~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (748)
.++|.+||+.+|.++|||+...+||+++++|++|+|++.|+|+|+|.|+++.+||++++++.+++|||++|||+++||++
T Consensus 84 ~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12753 84 IEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHH
Confidence 99999999999999999998789999999999999999999999999999988999888888999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEE-EccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004509 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-VKNGNTGYDDIRAAIKEAKAVTDKPTLI 327 (748)
Q Consensus 249 ~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~-v~dG~~D~~~l~~al~~a~~~~~~P~vI 327 (748)
|||+++|++++|+|||+|+|||+++|+++++....+++.++|++|||++++ | ||| |+++|.+|+++|++..++|++|
T Consensus 164 ~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~v-DGh-D~~~i~~a~~~a~~~~~~P~~I 241 (663)
T PRK12753 164 HEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEI-DGH-DPQAIKEAILEAQSVKDKPSLI 241 (663)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCeEEcee-CCC-CHHHHHHHHHHHHHCCCCeEEE
Confidence 999999999999999999999999999999877778999999999999996 7 999 9999999999998745899999
Q ss_pred EEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHH
Q 004509 328 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 407 (748)
Q Consensus 328 ~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 407 (748)
+++|+||+|+++++++.+||+.+++++++++++++++|+.++|.+|+++++.|+. .+++.....+|.+.+.+|.+.+|+
T Consensus 242 ~~~T~kG~G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~ 320 (663)
T PRK12753 242 ICRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA-REKGEKAEQAWNEKFAAYKKAYPE 320 (663)
T ss_pred EEEEeecCCCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh-hhhchHHHHHHHHHHHHHHHHCHH
Confidence 9999999999999889999999999999999999999988899999999999975 567788888999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccCCCCC----CCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccC
Q 004509 408 EAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 483 (748)
Q Consensus 408 ~~~~~~~~l~~~~p~~~~~~~p~~~----~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~ 483 (748)
...++.+.++++.|+.|...++.+. ...+++++|++++++|.++++.+|+++++++|++.|+.+.+++.++|++ +
T Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~-~ 399 (663)
T PRK12753 321 LAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKE-D 399 (663)
T ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhh-c
Confidence 9999999888888888876555442 1234689999999999999999999999999999998877777778976 7
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 484 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
||+||||+|||||+|+++|+|||++|+ ++||+++|++|++|++||||+.||+++||++|+||+|+++|+||+|||++||
T Consensus 400 ~p~r~i~~GIaEq~mv~~aaGlA~~~G-~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~ied 478 (663)
T PRK12753 400 PAGNYIHYGVREFGMTAIANGIAHHGG-FVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQ 478 (663)
T ss_pred CCCCEEEeeecHHHHHHHHHHHHHhCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHH
Confidence 999999999999999999999999553 7999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccceeEEecCCCCCCCCEEEEE
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIG 641 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~~~~g~dvtlva 641 (748)
+++||.||||+|++|+|++|++.+++.++++.++|+|||++|+++|.++... ...+..|+|++++.+ +++|++||+
T Consensus 479 la~lR~iPn~~v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iia 556 (663)
T PRK12753 479 LASLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIARGGYILKDSG--GKPDLILIA 556 (663)
T ss_pred HHHHhcCCCCEEEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCCCCcccchhhccCCcEEEeccC--CCCCEEEEE
Confidence 9999999999999999999999999999975689999999999998776542 234778887776531 136999999
Q ss_pred eChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhcCCccEEeeCcCC
Q 004509 642 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 721 (748)
Q Consensus 642 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~~~~~~ig~d~f~ 721 (748)
+|+||++|++|+++|+++||+++||||+|++|||.+.++|++++++.....+|++|++...+|.++...+..++|+|+|+
T Consensus 557 ~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~~~~~~~~~~iGvd~Fg 636 (663)
T PRK12753 557 TGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFG 636 (663)
T ss_pred eCHHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccChHHHHHHHcCCCCeEEEeCCCc
Confidence 99999999999999999999999999999999999999998888775332249999998888888776677889999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 722 ASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 722 ~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
.+|+.++|+++||||+++|++++++++
T Consensus 637 ~sg~~~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 637 ESAPADKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 4
>PLN02790 transketolase
Probab=100.00 E-value=1.5e-129 Score=1138.26 Aligned_cols=651 Identities=86% Similarity=1.383 Sum_probs=597.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHhh
Q 004509 95 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKN 174 (748)
Q Consensus 95 iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~~ 174 (748)
||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||+++++|++++++||+.++.++|++
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999984458999999
Q ss_pred hhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHH
Q 004509 175 FRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 254 (748)
Q Consensus 175 ~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~ 254 (748)
||+.+|.++|||++.++||+++++|++|+|++.|+|+|+|.|+++++|++++.++.+++|||++|||+++||++|||+++
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 99999999999998889999999999999999999999999998887887766667899999999999999999999999
Q ss_pred HHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccC--CCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 255 AGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNG--NTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 255 A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG--~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
|++++|+||++|+|||+++|+++++....+++.++|++|||+++.| || | |+++|.+|+++|++..++|++|+++|+
T Consensus 161 A~~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~v-dgg~h-d~~~l~~a~~~a~~~~~~P~lI~~~T~ 238 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWV-KNGNT-DYDEIRAAIKEAKAVTDKPTLIKVTTT 238 (654)
T ss_pred HHHhCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEE-CCCCC-CHHHHHHHHHHHHhcCCCeEEEEEEEe
Confidence 9999999999999999999999998877889999999999999999 66 8 999999999999864579999999999
Q ss_pred eccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHH
Q 004509 333 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEF 412 (748)
Q Consensus 333 kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~ 412 (748)
||+|+++++++.+||+.+++++++++++++++|+.+||.++++++++|+....++.....+|++.+.++...+|+.++++
T Consensus 239 kG~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 318 (654)
T PLN02790 239 IGYGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAEL 318 (654)
T ss_pred ecCCCccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHH
Confidence 99999998889999999999999999999999998899999999888876555666677899999999999999999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccC-CCCCcccc
Q 004509 413 KSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT-PEERNVRF 491 (748)
Q Consensus 413 ~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~-~p~R~id~ 491 (748)
++.+++++|..|...+|.|...+++.+||+++++.|.++++.+|+++++++|+..|+.+.++++.+|++ + ||+||||+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~-~~~p~Rfi~~ 397 (654)
T PLN02790 319 KSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQK-DTPEERNVRF 397 (654)
T ss_pred HHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhh-cCCCCCeEEe
Confidence 999999999988888888865555689999999999999999999999999999888776666788976 6 69999999
Q ss_pred ccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCC
Q 004509 492 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMP 571 (748)
Q Consensus 492 GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iP 571 (748)
|||||+|+++|+|||++|.|++||++||++|++|+++|||++||+++||+|++||+|+++|+||+|||++||+++||+||
T Consensus 398 GIaEq~mv~~AaGlA~~G~G~~P~~~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iP 477 (654)
T PLN02790 398 GVREHGMGAICNGIALHSSGLIPYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMP 477 (654)
T ss_pred eechHHHHHHHHHHHhcCCCcEEEEEecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCC
Confidence 99999999999999997612799999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHH
Q 004509 572 NILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAK 651 (748)
Q Consensus 572 nl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~ 651 (748)
||+|++|+|++|++.++++++.+.++|+|||++|+++|.++.+..+.+.+|+|++.+.+.+.++|++||++|+||++|++
T Consensus 478 nl~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~G~~vl~~~~~~~~~dv~iia~G~~v~~Al~ 557 (654)
T PLN02790 478 NILMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNKPDLILIGTGSELEIAAK 557 (654)
T ss_pred CcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCCcccccccCcEEEEeCCCCCCCCEEEEEcCHHHHHHHH
Confidence 99999999999999999999976689999999999998776543356889998887642001279999999999999999
Q ss_pred HHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhcCCccEEeeCcCCCCCCHHHHHH
Q 004509 652 AAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYK 731 (748)
Q Consensus 652 Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~~~~~~ig~d~f~~~G~~~~l~~ 731 (748)
|++.|+++||+++|||++|++|||.+.+.|++.++....+.+|++|+++..||++++..+..++|+|+|+.+|+.++|++
T Consensus 558 Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~igvd~Fg~sg~~~~l~~ 637 (654)
T PLN02790 558 AAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYK 637 (654)
T ss_pred HHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceEEEeCCCcCcCCHHHHHH
Confidence 99999999999999999999999999998888888444445799999999999888766667899999999999999999
Q ss_pred HhCCCHHHHHHHHHHhC
Q 004509 732 EFGITAEAVITAAKEVC 748 (748)
Q Consensus 732 ~~gl~~e~I~~~i~~ll 748 (748)
+||||+++|+++|++++
T Consensus 638 ~~Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 638 EFGFTVENVVAAAKSLL 654 (654)
T ss_pred HhCCCHHHHHHHHHHhC
Confidence 99999999999999875
No 5
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=7.9e-129 Score=1132.05 Aligned_cols=651 Identities=57% Similarity=0.949 Sum_probs=597.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCCH
Q 004509 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQE 169 (748)
Q Consensus 90 ~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~ 169 (748)
+++++||+++++|+.++++||+|++||++||+++||+.+|++||+||+|++|||||+|+||++|++|+++++.|++ ++.
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~-~~~ 80 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYD-LSI 80 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCC-CCH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999985 589
Q ss_pred HHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHH
Q 004509 170 DDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN 249 (748)
Q Consensus 170 ~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~ 249 (748)
++|++||+.+|.++|||++..+||+++++|++|+|++.|+|+|+|.|+++.+||+++.+..+++|||++|||+++||.+|
T Consensus 81 e~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~ 160 (653)
T TIGR00232 81 EDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISY 160 (653)
T ss_pred HHHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHH
Confidence 99999999999999999987899999999999999999999999999999889988877789999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004509 250 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 250 Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
||+++|++++|+||++|||||+++|+++++....+++.++|++|||++++|.||| |++++.+|+++|++..++|++|++
T Consensus 161 EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~-D~~ai~~A~~~a~~~~~~P~~I~~ 239 (653)
T TIGR00232 161 EVASLAGHLKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGH-DLAAIDAAIEEAKASKDKPTLIEV 239 (653)
T ss_pred HHHHHHHHhCCCcEEEEEeCCCeeeccccccccCccHHHHHHhcCCcEEEeCCCC-CHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9999999999999999999999999999987667899999999999999988999 999999999999873358999999
Q ss_pred EeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHH-HhhhhhhHHHHHHHHHHHHhhCHHH
Q 004509 330 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEKKYPEE 408 (748)
Q Consensus 330 ~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~ 408 (748)
+|+||+|++++++..+||+.+++++++++++++++|+.+||.+|+++++.|+.. .+++....++|++.+.+|.+.+|+.
T Consensus 240 ~T~~g~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~ 319 (653)
T TIGR00232 240 TTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPEL 319 (653)
T ss_pred EeeecccCcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHH
Confidence 999999999999899999999999999999999999877899999999999763 5778888899999999999999999
Q ss_pred HHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCc
Q 004509 409 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERN 488 (748)
Q Consensus 409 ~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~ 488 (748)
..++++.+++++|..|...+|.|....++.+||++++++|.++++.+|+++++++|+..|+++.+++...|.+ +||+||
T Consensus 320 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~-~~p~rf 398 (653)
T TIGR00232 320 AAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHE-NPLGNY 398 (653)
T ss_pred HHHHHHHHhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhh-cCCCCe
Confidence 9999998988889888887777643345689999999999999999999999999998887764433344765 799999
Q ss_pred cccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHh
Q 004509 489 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 568 (748)
Q Consensus 489 id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr 568 (748)
||+|||||+|+++|+|||++|. ++||++||++|++|+++|||+.|++++||++++||+|+++|+||+|||++||+++||
T Consensus 399 i~~GIaEq~mv~~AaGlA~~gG-~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr 477 (653)
T TIGR00232 399 IHYGVREFAMGAIMNGIALHGG-FKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLR 477 (653)
T ss_pred EeecccHHHHHHHHHHHHHcCC-CeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHh
Confidence 9999999999999999999663 799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHH
Q 004509 569 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 648 (748)
Q Consensus 569 ~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~ 648 (748)
+||||+|++|+|++|++.++++++++.++|+|||++|++.|.+++.+...+..|+|++.... |+||+||++|+||++
T Consensus 478 ~iPn~~v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~~~~~~~~~~~G~~vl~~~~---g~dv~iia~G~~v~~ 554 (653)
T TIGR00232 478 AIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEESSLEKVLKGGYVLKDSK---GPDIILIATGSEVSL 554 (653)
T ss_pred cCCCCEEEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCCCcccccccCCCcEEEEecC---CCCEEEEEeChHHHH
Confidence 99999999999999999999999965789999999999998776443245788988775332 789999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhcCCccEEeeCcCCCCCCHHH
Q 004509 649 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGK 728 (748)
Q Consensus 649 al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~~~~~~ig~d~f~~~G~~~~ 728 (748)
|++|++.|+++||+++|||++|++|||++..+|+.+++++... +||+|+|+..||..++.....++|+|+|+.+|++++
T Consensus 555 al~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~-vvtvEe~~~~g~~~~~~~~~~~igvd~fg~sg~~~~ 633 (653)
T TIGR00232 555 AVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVT-RLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDK 633 (653)
T ss_pred HHHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCc-eEEEecccHhHHHHhcCCcceEEEecCCcCCCCHHH
Confidence 9999999999999999999999999999887777888876544 699999999888665432236799999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 004509 729 IYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 729 l~~~~gl~~e~I~~~i~~ll 748 (748)
|+++||||+++|+++|++++
T Consensus 634 L~~~~Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 634 LFEEFGFTVENVVAKAKKLL 653 (653)
T ss_pred HHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999875
No 6
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=6.1e-128 Score=1125.96 Aligned_cols=652 Identities=56% Similarity=0.941 Sum_probs=589.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCC
Q 004509 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (748)
Q Consensus 86 ~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~ 165 (748)
.+.+++|++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++||.
T Consensus 4 ~~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~ 83 (661)
T PTZ00089 4 AIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYD 83 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred CCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcch
Q 004509 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (748)
Q Consensus 166 ~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (748)
++.++|.+||+.+|.++|||++.++||+++++|++|+|++.|+|+|+|.|+++++||+++.+..+++|||++|||+++|
T Consensus 84 -~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~e 162 (661)
T PTZ00089 84 -LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQE 162 (661)
T ss_pred -CCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhh
Confidence 4899999999999999999998889999999999999999999999999999999998877777999999999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCE
Q 004509 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT 325 (748)
Q Consensus 246 G~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~ 325 (748)
|++|||+++|++++|+|||+|+|||+++|++++.....+++.++|++|||+++.|+|||+|+++|.+|+++|++..++|+
T Consensus 163 G~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~ 242 (661)
T PTZ00089 163 GVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPK 242 (661)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999999987778899999999999999988997799999999999987347999
Q ss_pred EEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCC-CCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 004509 326 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPY-EPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKK 404 (748)
Q Consensus 326 vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~-~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 404 (748)
+|+++|+||+|+ .++++.+||+.+++++++++++++++|+. .+|.++++++++|+...+++.....+|+..+.++.+.
T Consensus 243 ~I~~~T~kG~G~-~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 321 (661)
T PTZ00089 243 LIIVKTTIGYGS-SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAA 321 (661)
T ss_pred EEEEEeeecCCC-CcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999994 67788999999999999999999999954 4699999999888765445556678999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC
Q 004509 405 YPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 484 (748)
Q Consensus 405 ~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~ 484 (748)
+|+...++.+.+.+++|..|...+|+|...+++.+||++++++|.++++.+|+++++++|+..|+++.++...+|++ +|
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~-~~ 400 (661)
T PTZ00089 322 FPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTK-AS 400 (661)
T ss_pred CHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccc-cC
Confidence 99999999998988888888767777654456789999999999999999999999999998888754444467866 79
Q ss_pred C-CCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 485 E-ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 485 p-~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
| +||||+|||||+|+++|+|||++|. ++||+++|++|++|++||||+.||+++||+|++||+|+++|+||+|||++||
T Consensus 401 P~~rfi~~GIaEq~mv~~AaGlA~~~G-~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~ied 479 (661)
T PTZ00089 401 PEGRYIRFGVREHAMCAIMNGIAAHGG-FIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVET 479 (661)
T ss_pred CCCCeeeeeecHHHHHHHHHHHHHcCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHH
Confidence 9 8999999999999999999999553 8999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTG 643 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G 643 (748)
+++||+||||+|++|+|++|++.++++++++.++|+|||++|+++|.++..+...+..|.|++++.+ +++|++||++|
T Consensus 480 ia~lR~iPn~~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~g~~vl~~~~--~~~dv~iia~G 557 (661)
T PTZ00089 480 LALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKGAYIVVDFT--NSPQLILVASG 557 (661)
T ss_pred HHHHhcCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCcCCCccccccCceEEEeccC--CCCCEEEEeeC
Confidence 9999999999999999999999999999966789999999999998776543222333445665421 14899999999
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhcc-CCCceEEEEccccccCcchhhcCCccEEeeCcCCC
Q 004509 644 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGA 722 (748)
Q Consensus 644 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~-~~~~~vv~vE~~~~~G~~~~v~~~~~~ig~d~f~~ 722 (748)
+||.+|++|++.|++ ||+++|||++|++|||.+.+.|++.+++ .+.+ +|++|++...||..+.. .++|++.|+.
T Consensus 558 ~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~-~vtiE~~~~~g~~~~~~---~~igv~~Fg~ 632 (661)
T PTZ00089 558 SEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVP-VLSVEAYVSFGWEKYSH---VHVGISGFGA 632 (661)
T ss_pred HHHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCc-eEeHHhhHHHHHHhcCC---eEEECCCccc
Confidence 999999999999999 9999999999999999999888878887 4444 59999999999876543 5799977999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 723 SAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 723 ~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
+|+.++|+++||||+++|+++|++++
T Consensus 633 sg~~~~l~~~~Gl~~e~I~~~i~~~l 658 (661)
T PTZ00089 633 SAPANALYKHFGFTVENVVEKARALA 658 (661)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999999999999999999998864
No 7
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-122 Score=1008.84 Aligned_cols=611 Identities=50% Similarity=0.803 Sum_probs=552.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHc
Q 004509 83 TDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA 162 (748)
Q Consensus 83 ~~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~ 162 (748)
.++.+++.-+++||...++++.++++||+++++|++++..+||+.+|||||.+|+|++|||||||+||+||+||++++|+
T Consensus 5 ~~~~~~~~~~n~lri~si~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~ 84 (632)
T KOG0523|consen 5 QDSQILKDAVNNLRILSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLA 84 (632)
T ss_pred hhhhhhHHHhhhhhhhhHHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHh
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchh
Q 004509 163 GYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC 242 (748)
Q Consensus 163 G~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~ 242 (748)
||+ +.++|.+|||.+|.++|||++ ++|+++++||++||||+.|+|||++.+++++ .+++|||++||||
T Consensus 85 G~~--~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k---------~~~rv~~vlGDG~ 152 (632)
T KOG0523|consen 85 GYD--REEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGK---------ASNRVYCVLGDGC 152 (632)
T ss_pred ccC--cHHHHHHHHhhCCCCCCCCcc-cCCCceeccCCccchHHHHHHHHHHHHhhcc---------ccceEEEEEcCch
Confidence 986 999999999999999999995 8999999999999999999999999998863 3789999999999
Q ss_pred cchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHH-HHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcC
Q 004509 243 QMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDK-RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT 321 (748)
Q Consensus 243 ~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~-~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~ 321 (748)
++||++|||+++|++++|+|||+|+|+|+.++++++...+.+|+.+ ++++|||+++.| ||+ |+++|.++|.+|+...
T Consensus 153 ~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V-~~~-d~d~i~ka~~~a~~~k 230 (632)
T KOG0523|consen 153 LTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIV-DGG-DVDEIRKAIGKAKSVK 230 (632)
T ss_pred hccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEE-cCc-CHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999999999988 999999999999 999 9999999999998767
Q ss_pred CCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 004509 322 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEY 401 (748)
Q Consensus 322 ~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~ 401 (748)
+||+.|.++|.+|+|.+..+ +..|||.++.+++++++++.++||...|.|+++++
T Consensus 231 ~kpt~i~~~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~------------------------ 285 (632)
T KOG0523|consen 231 GKPTAIKATTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVK------------------------ 285 (632)
T ss_pred CCceeeeeeeeeecCccccc-cccccCCcchhhHHHHHHhhcCCcceeEEeccccc------------------------
Confidence 89999999999999999988 89999999999999999999999888888887652
Q ss_pred HhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccc
Q 004509 402 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQK 481 (748)
Q Consensus 402 ~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~ 481 (748)
.+|+...+..+......|..|+..+|.|+++++.+++|++|+++|.++++.+|+++.+++|+..|+++ +.| +
T Consensus 286 --~~p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t-----d~~-~ 357 (632)
T KOG0523|consen 286 --LYPEKPVEDARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT-----DFF-P 357 (632)
T ss_pred --cCCCcccccccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh-----hhc-c
Confidence 23333334444566678889999999999988779999999999999999999999999999999875 335 4
Q ss_pred cCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCCh
Q 004509 482 DTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 561 (748)
Q Consensus 482 ~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ 561 (748)
++||+|||++|||||||+++|+|+|..|. ++|||.||+.|++|++||||+.++.+.+|+++++|+++++|+||||||++
T Consensus 358 ~~~p~R~i~~giaEq~mv~ia~G~a~~g~-~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~i 436 (632)
T KOG0523|consen 358 KRFPERFIECGIAEQNMVGIANGIACRGR-TIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPI 436 (632)
T ss_pred ccCccceEEEeeehhhhHHhhhchhcCCC-ccchhHHHHHHHHHhhhheeehhhccCCcEEEEEeccccccCCCcccccH
Confidence 58999999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEE
Q 004509 562 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIG 641 (748)
Q Consensus 562 edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva 641 (748)
||+++||+||||+|++|+|++|+..++..|++..+.|++++++|+..|.++..+.+.+..|+|.+.+. .+||+||+
T Consensus 437 edlA~frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~~~~~igkg~~vl~~~----~~dV~LiG 512 (632)
T KOG0523|consen 437 EDLAMFRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNTEIEEIGKGKYVLQEV----EPDVILIG 512 (632)
T ss_pred HHHHHHHhCCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCCchhhhccccEEEecC----CCCEEEEe
Confidence 99999999999999999999999999999998656699999999999988766555566677766553 36999999
Q ss_pred eChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccC---------cchhhcCCc
Q 004509 642 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG---------WEKIVGSKG 712 (748)
Q Consensus 642 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G---------~~~~v~~~~ 712 (748)
+|++|++|++||+.|+++||+++|||++||||||..++. +..+.....+.|+|++...| |+.|.+..+
T Consensus 513 ~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~---~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~~~~~~ 589 (632)
T KOG0523|consen 513 TGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIR---SLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYPGILV 589 (632)
T ss_pred ccHHHHHHHHHHHHHHhcCceEEEecccceeecchHHhh---hhhcccceeEEEccCCCCCcchhheeeehhcccCCccc
Confidence 999999999999999999999999999999999987764 22222222357777776542 455554445
Q ss_pred cEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 713 KAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 713 ~~ig~d~f~~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
..+++|+|+.+|++.+|+++||++++.|++++++++
T Consensus 590 ~~~~~~~~~~sG~p~ell~~fGit~~~Ia~~a~~~~ 625 (632)
T KOG0523|consen 590 PSLGVDTFGRSGPPPELLKMFGITARHIAAAALSLI 625 (632)
T ss_pred eeeccccCCcCCCCHHHHHHhCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999999999864
No 8
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=4.5e-114 Score=1009.81 Aligned_cols=621 Identities=61% Similarity=0.953 Sum_probs=550.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l 161 (748)
|-..+.|+++|++||+++++|+..+++||+|++||++||+++||+++|++||+||+|++|||||+|+||++|++|+++++
T Consensus 2 ~~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~ 81 (624)
T PRK05899 2 MMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHL 81 (624)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHH
Confidence 44556699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcc
Q 004509 162 AGY-DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240 (748)
Q Consensus 162 ~G~-~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGD 240 (748)
+|+ + +.++|.+||++++.++|||++.++|++++++|++|+|+|.|+|+|+|.++++.+|+++..+..+++|||++||
T Consensus 82 ~G~~~--~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GD 159 (624)
T PRK05899 82 AGYDL--SIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGD 159 (624)
T ss_pred cCCCC--CHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECc
Confidence 998 6 8999999999999999999987899999999999999999999999999988878877666678999999999
Q ss_pred hhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhc
Q 004509 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV 320 (748)
Q Consensus 241 G~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~ 320 (748)
|++++|++|||+++|++++|+|+++|+|||++++++++.....+++.++|++|||++++| ||| |++++.+++++|++
T Consensus 160 G~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~G~~~~~V-dG~-d~~~l~~al~~a~~- 236 (624)
T PRK05899 160 GDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEV-DGH-DVEAIDAAIEEAKA- 236 (624)
T ss_pred chhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccccccccccHHHHhccCCCeEEEE-CCC-CHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999887555689999999999999998 999 99999999999987
Q ss_pred CCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 004509 321 TDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAE 400 (748)
Q Consensus 321 ~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~ 400 (748)
.++|++|+++|+||+|++++++..+||+.+++++++++++++++++.++|.++.++++.|++..+++......|...+
T Consensus 237 ~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 314 (624)
T PRK05899 237 STKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKF-- 314 (624)
T ss_pred cCCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhh--
Confidence 679999999999999999998888999999889999999998887667888888887777654444432222222110
Q ss_pred HHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCcccccccccccc
Q 004509 401 YEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 480 (748)
Q Consensus 401 ~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~ 480 (748)
. .++.++|++++++|.+++++||+++++++|++.++.........|.
T Consensus 315 ----------------------------~-----~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~ 361 (624)
T PRK05899 315 ----------------------------A-----GEKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFA 361 (624)
T ss_pred ----------------------------c-----ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccC
Confidence 0 1356899999999999999999999999999876654222223453
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCC
Q 004509 481 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP 560 (748)
Q Consensus 481 ~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~ 560 (748)
+++||+||||+|||||+|+|+|+|||+.|. ++||+++|++|++|+++|||+.|++++||+++++++|+++|.+|+|||+
T Consensus 362 ~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~-~~pv~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~ 440 (624)
T PRK05899 362 PEDYSGRYIHYGVREFAMAAIANGLALHGG-FIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQP 440 (624)
T ss_pred ccCCCCCeeeeChhHHHHHHHHHHHHHcCC-CeEEEEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCccc
Confidence 347999999999999999999999999993 5999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC-CccccccceeEEecCCCCCCCCEEE
Q 004509 561 IEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVIL 639 (748)
Q Consensus 561 ~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~-~~~~~~~G~~~v~~~~~~~g~dvtl 639 (748)
+||+++||++|||+|++|+|++|++++|+++++..++|+|||++|+..|.++++ ....++.|+++++ + |+|+||
T Consensus 441 ~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~l~-~----G~dvti 515 (624)
T PRK05899 441 VEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQEEGVAKGGYVLR-D----DPDVIL 515 (624)
T ss_pred HHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCcCCccccccccCCcEEEe-c----CCCEEE
Confidence 999999999999999999999999999999997448999999999988776543 3356888986654 4 689999
Q ss_pred EEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhcCCccEEeeCc
Q 004509 640 IGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDR 719 (748)
Q Consensus 640 va~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~~~~~~ig~d~ 719 (748)
|++|+|+++|++|++.|+++||+++|||++|++|||.+...++...+.+.+..+|++|++...||..++..+..++|++.
T Consensus 516 ia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~~~~~~iGv~~ 595 (624)
T PRK05899 516 IATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDT 595 (624)
T ss_pred EEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchhhhcCCCceEEECCC
Confidence 99999999999999999999999999999999999998655666666444333588898888889777766778999955
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 720 FGASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 720 f~~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
|+.+|++++|+++||||+++|+++|++++
T Consensus 596 f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 596 FGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999875
No 9
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.5e-104 Score=918.52 Aligned_cols=546 Identities=22% Similarity=0.296 Sum_probs=464.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcC
Q 004509 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (748)
Q Consensus 84 ~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G 163 (748)
+.+.|+++|++||+.+++|+.++ +||+|++||++||+++||+. ||. ++||||||+||++ |++++++|
T Consensus 47 ~~~~l~~la~~iR~~ii~~~~~~-~GH~g~~Ls~vel~~aL~~~---~~~------p~Dr~i~s~GH~a---y~~~~l~g 113 (677)
T PLN02582 47 SVKELKQLADELRSDVIFNVSKT-GGHLGSSLGVVELTVALHYV---FNA------PQDKILWDVGHQS---YPHKILTG 113 (677)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc-CCCcCccccHHHHHHHHHHh---hCC------CCCeEEEECcchH---HHHHHHHc
Confidence 44569999999999999999975 89999999999999999975 442 4699999999999 99999999
Q ss_pred CCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc
Q 004509 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (748)
Q Consensus 164 ~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (748)
+ .++|.+||+.+| ++|||++.++||+++++|++|++++.|+|+|+|.++++ .+++|||++|||++
T Consensus 114 r----~~~l~~~r~~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~viGDG~~ 178 (677)
T PLN02582 114 R----RDKMHTMRQTNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKG----------KKNNVVAVIGDGAM 178 (677)
T ss_pred c----HHHhcccccCCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcC----------CCCEEEEEeccccc
Confidence 5 688999999999 77999998999999999999999999999999998775 37899999999999
Q ss_pred chhhHHHHHHHHHHcCCCcEEEEEECCCC-cc--------ccccccc--------cc---------------------cc
Q 004509 244 MEGIANEASSLAGHLGLGKLIAFYDDNHI-SI--------DGDTEIA--------FT---------------------EN 285 (748)
Q Consensus 244 ~eG~~~Eal~~A~~~~L~~li~Ivd~N~~-~i--------~~~~~~~--------~~---------------------~~ 285 (748)
+||++|||+++|+.+++ |+++|+|||++ +| +.++... .. .+
T Consensus 179 ~~G~~~Ealn~a~~~~~-~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (677)
T PLN02582 179 TAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHE 257 (677)
T ss_pred chhhHHHHHHHHHhhCc-CEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHH
Confidence 99999999999999997 89999999998 34 3333210 00 11
Q ss_pred HH----------------HHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcC-CCCEEEEEEeeeccCCCCCC-CCcccc
Q 004509 286 VD----------------KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT-DKPTLIRVTTTIGFGSPNKA-NSYSVH 347 (748)
Q Consensus 286 ~~----------------~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~-~~P~vI~~~T~kg~G~~~~~-~~~~~H 347 (748)
+. .+|++|||+|+.++||| |+++|.++|+++++.. ++|++||++|+||+|+++++ ++.+||
T Consensus 258 ~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGH-d~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H 336 (677)
T PLN02582 258 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH-NIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYH 336 (677)
T ss_pred HHHHHHHHhhhccCccccchHHHcCCeEEeeeCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcC
Confidence 11 25999999999777999 9999999999998732 69999999999999999996 455889
Q ss_pred CCc-CchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccc
Q 004509 348 GSA-LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEK 426 (748)
Q Consensus 348 ~~~-~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~ 426 (748)
+.. +++++ + ++ .+
T Consensus 337 ~~~~f~~~~--------g---~~--------------------------------------------------~~----- 350 (677)
T PLN02582 337 GVVKFDPAT--------G---KQ--------------------------------------------------FK----- 350 (677)
T ss_pred CCCCCCccc--------C---Cc--------------------------------------------------cC-----
Confidence 753 22211 0 00 00
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHH
Q 004509 427 ALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 506 (748)
Q Consensus 427 ~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA 506 (748)
+ .....++.++|+++|.+++++||+++++++|++++++ +..|++ +||+||||+|||||+||++|+|||
T Consensus 351 --~----~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~g-----l~~f~~-~fP~R~fdvGIAEq~~vg~AaGLA 418 (677)
T PLN02582 351 --V----KAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFAR-RFPTRCFDVGIAEQHAVTFAAGLA 418 (677)
T ss_pred --C----CCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccc-----hHHHHH-HcCccccccCcCHHHHHHHHHHHH
Confidence 0 0011356778999999999999999999999976654 246876 799999999999999999999999
Q ss_pred hcCCCCccEEEeehhHHHHHHHHHHH-hhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004509 507 LHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 585 (748)
Q Consensus 507 ~~G~~~~Piv~~f~~F~~r~~dqIr~-~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~ 585 (748)
+.| ++||+++|++|++|+||||+. .|++++||+|+++++|+ .|+||+|||+++|+++||+||||+|++|+|+.|++
T Consensus 419 ~~G--~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~-vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~ 495 (677)
T PLN02582 419 CEG--LKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELF 495 (677)
T ss_pred HCC--CeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCc-ccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHH
Confidence 999 699999999999999999865 59999999999988888 57899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCCCC--CCC-ccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc
Q 004509 586 GAYKVAVANRKRPSILALSRQKLPHLA--GTS-IDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 662 (748)
Q Consensus 586 ~~l~~a~~~~~~P~~irl~r~~~~~~~--~~~-~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~ 662 (748)
.+|++|+...++|+|||++|+..+... ... .+.+++|++.++++ |+|++||++|+|+++|++|++.|+++||+
T Consensus 496 ~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~----G~dvtIva~G~~v~~Al~Aa~~L~~~GI~ 571 (677)
T PLN02582 496 HMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLE----GERVALLGYGTAVQSCLAAASLLERHGLS 571 (677)
T ss_pred HHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEe----CCCEEEEeecHHHHHHHHHHHHHHhcCCC
Confidence 999999965569999999998754322 111 23578899888887 68999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhc------------CCccEEee-CcCCCCCCHHHH
Q 004509 663 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKGKAIGI-DRFGASAPAGKI 729 (748)
Q Consensus 663 v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~------------~~~~~ig~-d~f~~~G~~~~l 729 (748)
++|||++|++|||.+.+ .++.+++. .+||+|++...||++.+. .++.++|+ |+|+.+|++++|
T Consensus 572 ~~VId~~~lkPlD~~~i---~~~~k~~~-~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L 647 (677)
T PLN02582 572 ATVADARFCKPLDRALI---RSLAKSHE-VLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQ 647 (677)
T ss_pred EEEEEcCcCCCCCHHHH---HHHhhhCC-EEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHH
Confidence 99999999999999876 36666664 469999999988876431 24567899 899999999999
Q ss_pred HHHhCCCHHHHHHHHHHhC
Q 004509 730 YKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 730 ~~~~gl~~e~I~~~i~~ll 748 (748)
+++||||+++|+++|++++
T Consensus 648 ~~~~GL~~e~I~~~i~~~l 666 (677)
T PLN02582 648 LAEAGLTPSHIAATVLNVL 666 (677)
T ss_pred HHHhCcCHHHHHHHHHHHH
Confidence 9999999999999998764
No 10
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=3e-104 Score=871.57 Aligned_cols=546 Identities=23% Similarity=0.319 Sum_probs=474.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcC
Q 004509 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (748)
Q Consensus 84 ~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G 163 (748)
+.+.|++||.+||..+++.+++ ++||+|++||+||+++|||+. ||. +.|+||||.|||+ |+|++|||
T Consensus 18 s~~eL~~La~EiR~~li~~vS~-~GGHlgsnLGvVELTiALH~V---F~s------P~D~~IwDVgHQa---YpHKiLTG 84 (627)
T COG1154 18 SIEELPQLADEIREFLLEVVSA-TGGHLGSNLGVVELTIALHYV---FDS------PKDKLIWDVGHQA---YPHKILTG 84 (627)
T ss_pred CHHHHHHHHHHHHHHHHHHhcc-CCCccCCCcChhhhhHHHHHH---hCC------CCCCeEEecCccc---chhHHhcC
Confidence 4456999999999999999998 899999999999999999999 886 7899999999999 99999999
Q ss_pred CCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc
Q 004509 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (748)
Q Consensus 164 ~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (748)
+ .+++.+.||.+|.+ |+|.+.|++++.|.+||.+++||+|+|+|.|..+++ .+++|+|+||||++
T Consensus 85 R----~e~f~tlRq~~Gls-Gf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g----------~~~~vvaVIGDGAl 149 (627)
T COG1154 85 R----REQFDTLRQKDGLS-GFPKREESEHDWFGVGHSSTSISAALGMAKARDLKG----------EDRNVVAVIGDGAL 149 (627)
T ss_pred c----hhhcchhhhcCCCC-CCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcC----------CCCcEEEEECCccc
Confidence 5 69999999999987 899999999999999999999999999999998876 37899999999999
Q ss_pred chhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc--------cc-------cc----------------------H
Q 004509 244 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--------FT-------EN----------------------V 286 (748)
Q Consensus 244 ~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~--------~~-------~~----------------------~ 286 (748)
..||+|||||.|+...-.|+++|+|||+|||+.+++.. .. +. +
T Consensus 150 t~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~ 229 (627)
T COG1154 150 TGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESI 229 (627)
T ss_pred cchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhh
Confidence 99999999999993222689999999999999987610 00 00 0
Q ss_pred H------HHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCCCCCC-CCccccCCc-CchhhHHH
Q 004509 287 D------KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKA-NSYSVHGSA-LGAKEVDA 358 (748)
Q Consensus 287 ~------~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G~~~~~-~~~~~H~~~-~~~~e~~~ 358 (748)
. ..|+.+||+|+.++||| |+++|..+|+.+++ .++|++||+.|.||||+.+++ |+.+||+.. ++..+
T Consensus 230 K~l~~~~~lFeelGf~YiGPiDGH-ni~~Li~~Lk~~kd-~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~--- 304 (627)
T COG1154 230 KGLLVPGTLFEELGFNYIGPIDGH-NLEELIPTLKNAKD-LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIE--- 304 (627)
T ss_pred hcccCchhhHHHhCCeeECCcCCC-CHHHHHHHHHHHhc-CCCCEEEEEEecCCCCCChhhcChhhccCCCCCCccc---
Confidence 1 27999999999999999 99999999999998 899999999999999999995 777899863 22100
Q ss_pred HHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcch
Q 004509 359 TRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE 438 (748)
Q Consensus 359 ~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~ 438 (748)
.| ..++. .....
T Consensus 305 ---------------------------tg-------------------------------~~~~~----------~~~~~ 316 (627)
T COG1154 305 ---------------------------TG-------------------------------QSKKS----------KPSAP 316 (627)
T ss_pred ---------------------------cC-------------------------------ccCCC----------CCCCC
Confidence 00 00000 00123
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEe
Q 004509 439 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT 518 (748)
Q Consensus 439 ~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~ 518 (748)
++-++|+++|.+++++|+++|.+++.+...++ +..|++ +||+||||+||||||+|++|+|||+.| ++|||++
T Consensus 317 sys~vf~~~L~~~a~~d~~ivaITaAM~~gtG-----L~~F~~-~fP~R~fDVGIAEQHAVT~AAGlA~~G--~kPvvaI 388 (627)
T COG1154 317 SYTKVFGDTLCELAAKDEKIVAITAAMPEGTG-----LVKFSK-KFPDRFFDVGIAEQHAVTFAAGLAAEG--MKPVVAI 388 (627)
T ss_pred CHHHHHHHHHHHHHhhCCCeEEEecCCCCCCC-----hHHHHH-hCchhheehhhhHHHHHHHHHHHHhCC--CCCEEEE
Confidence 56678999999999999999999999865443 467977 899999999999999999999999999 6999999
Q ss_pred ehhHHHHHHHH-HHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCC
Q 004509 519 FFVFTDYMRAA-IRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK 596 (748)
Q Consensus 519 f~~F~~r~~dq-Ir~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~ 596 (748)
|++|+||+||| ||+.|+|++||+|++ |+.| +|.||+|||+.+|+++||+||||.|++|+|++|++.||.+|+...+
T Consensus 389 YSTFLQRAYDQliHDvaiqnLPV~faI--DRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~ 466 (627)
T COG1154 389 YSTFLQRAYDQLIHDVAIQNLPVTFAI--DRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDD 466 (627)
T ss_pred ecHHHHHHHHHHHHHHHhccCCeEEEE--ecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCC
Confidence 99999999999 688999999999999 6666 7999999999999999999999999999999999999999998766
Q ss_pred CcEEEEEcCCCCCCCCCC-CccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHH
Q 004509 597 RPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFD 675 (748)
Q Consensus 597 ~P~~irl~r~~~~~~~~~-~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld 675 (748)
+|+.||+||+..+..... ..+.+++|+++++++ |.||+|+++|.++..|++||+.|.++||+++|||++++||||
T Consensus 467 gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~----G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD 542 (627)
T COG1154 467 GPVAIRYPRGNGVGVILTPELEPLEIGKGELLKE----GEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLD 542 (627)
T ss_pred CCeEEEecCCCCCCCCcccccccccccceEEEec----CCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCC
Confidence 899999999976543222 135689999999997 799999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCceEEEEccccc-cCcchhh---------cCCccEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHH
Q 004509 676 EQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV---------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAA 744 (748)
Q Consensus 676 ~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~v---------~~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I~~~i 744 (748)
++.+. .+.+++. .+||+||+.. .|+++.+ ..++.++|+ |.|.++|+++++++.+|||+++|+++|
T Consensus 543 ~~ll~---~La~~h~-~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i 618 (627)
T COG1154 543 EALLL---ELAKSHD-LVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRI 618 (627)
T ss_pred HHHHH---HHHhhcC-eEEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHH
Confidence 98653 4555554 5699999986 5666543 146678999 899999999999999999999999999
Q ss_pred HHhC
Q 004509 745 KEVC 748 (748)
Q Consensus 745 ~~ll 748 (748)
.+++
T Consensus 619 ~~~l 622 (627)
T COG1154 619 LEWL 622 (627)
T ss_pred HHHH
Confidence 8864
No 11
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2.3e-103 Score=921.54 Aligned_cols=639 Identities=22% Similarity=0.253 Sum_probs=528.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~~------GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~ 155 (748)
+.+.++.+++++.||+++++|+.++++ ||+|+++|+++|+.+||+++||++| +|++|| +|+|+||++|++
T Consensus 83 pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~---~~~~~D-~V~skGHasp~l 158 (896)
T PRK13012 83 PGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRD---DAGGGD-LVYFQPHSAPGI 158 (896)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCC---CCCCCC-EEEECcchHHHH
Confidence 567788888999999999999999998 9999999999999999999999974 678999 699999999999
Q ss_pred HHHHHHcCCCCCCHHHHhhhhhc--CCCCCCCCCCCCCC-ccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCc
Q 004509 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (748)
Q Consensus 156 Ya~~~l~G~~~~~~~~l~~~r~~--~s~~~Ghp~~~~~p-gi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~ 232 (748)
||.+++.|++ +.++|.+|||. ++.+++||+++..| +++++||+||+|++.|+|+|++.|++..+ .-.+..++
T Consensus 159 YA~~~l~G~l--~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~---g~~~~~~~ 233 (896)
T PRK13012 159 YARAFLEGRL--SEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHR---GLKDTSGR 233 (896)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhccccccc---ccccCCCC
Confidence 9999999985 99999999998 46677888887777 69999999999999999999999976432 11123579
Q ss_pred EEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc--ccccHHHHHhhCCcEEEEEc---------
Q 004509 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVK--------- 301 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~--------- 301 (748)
+|||++||||++||.+|||+.+|++++|+|||+|+|+|.+++++++... ..+++.++|++|||++++|+
T Consensus 234 ~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~ 313 (896)
T PRK13012 234 KVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALF 313 (896)
T ss_pred eEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHh
Confidence 9999999999999999999999999999999999999999999999754 34799999999999999986
Q ss_pred ----------------c-------------------------------------------CCCCHHHHHHHHHHHHhcCC
Q 004509 302 ----------------N-------------------------------------------GNTGYDDIRAAIKEAKAVTD 322 (748)
Q Consensus 302 ----------------d-------------------------------------------G~~D~~~l~~al~~a~~~~~ 322 (748)
| || |+.+|++|+++|++..+
T Consensus 314 ~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGH-D~~~i~~A~~~a~~~~~ 392 (896)
T PRK13012 314 ARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGH-DPRKVYAAYAAAVRHKG 392 (896)
T ss_pred cCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 8 99 99999999999886457
Q ss_pred CCEEEEEEeeeccCCC-CCCCCccccC-CcCchhhHHHHHHhcCCCCC-------CCCCchhHHHHHHHHHhhhhhhHHH
Q 004509 323 KPTLIRVTTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAE 393 (748)
Q Consensus 323 ~P~vI~~~T~kg~G~~-~~~~~~~~H~-~~~~~~e~~~~~~~~~~~~~-------~~~v~~e~~~~~~~~~~~g~~~~~~ 393 (748)
+|++|.++|+||+|.+ .+++.+.+|+ .+++.++++++++.++||.. ||.+|+++.+.++.+.++..
T Consensus 393 ~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~----- 467 (896)
T PRK13012 393 QPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRA----- 467 (896)
T ss_pred CCEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHHH-----
Confidence 8999999999999998 4577889998 78999999999999999764 79999888766654332211
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHh---CCCEEEEecCCCCCcc
Q 004509 394 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKT---LPGLLGGSADLASSNM 470 (748)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~---~p~vv~~saDl~~s~~ 470 (748)
.+..|. |+....... +..+.+..+...++. ...++++||+||+++|.+|++. .|++|.+++|++.+++
T Consensus 468 ---~l~g~~---P~r~~~~~~-l~~p~~~~~~~~~~~--~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~g 538 (896)
T PRK13012 468 ---ALGGYL---PRRRTAAPP-LPVPPLSAFAQFALG--AGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFG 538 (896)
T ss_pred ---HhcCcC---Ccccccccc-cCCCchhhHHHhhcc--cCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccC
Confidence 111111 111000000 111111112111111 1235789999999999999987 9999999999985553
Q ss_pred c---------cccc-----------cccccccCCCCCccccccchHHHHH--HHHHH--HhcCCCCccEEEeehhH-HHH
Q 004509 471 T---------LLKM-----------FGDFQKDTPEERNVRFGVREHGMGA--ICNGI--ALHSPGLIPYCATFFVF-TDY 525 (748)
Q Consensus 471 ~---------~~k~-----------~~~f~~~~~p~R~id~GIaE~~~vg--~AaGl--A~~G~~~~Piv~~f~~F-~~r 525 (748)
+ +... +..|+ ++||+|||++||+||+|++ +|+|+ |++|.|++||+.+|+.| .+|
T Consensus 539 m~~~f~~~~i~~~~gq~y~~~d~~~~~~yk-e~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R 617 (896)
T PRK13012 539 MANLFRQVGIYSPLGQLYEPEDAGSLLYYR-EAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQR 617 (896)
T ss_pred cccccccccccccccccccccchhHHhhhh-hCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHH
Confidence 2 1111 12343 4799999999999999987 77776 55676589999999999 679
Q ss_pred HHHHHHHh-hccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc-----CCCcE
Q 004509 526 MRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-----RKRPS 599 (748)
Q Consensus 526 ~~dqIr~~-a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~-----~~~P~ 599 (748)
++||||+. +++..+|++++||+|+++|++|+|||+++|++++|+||||+||.|+|+.|++.+++.++++ .++|+
T Consensus 618 ~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~ 697 (896)
T PRK13012 618 VGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFY 697 (896)
T ss_pred HHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeE
Confidence 99999997 7788889999999999999999999999999999999999999999999999999998843 26899
Q ss_pred EEEEcCCCCC--CCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC-CCcEEEEecCChhhHHH
Q 004509 600 ILALSRQKLP--HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFDE 676 (748)
Q Consensus 600 ~irl~r~~~~--~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld~ 676 (748)
|||++|++++ .++++....+.+|+|++.+.. .++|++||++|++|++|++||++|+++ ||+++||||+|++|||+
T Consensus 698 YIrL~r~~~~~p~~~~~~~~~i~kG~y~l~~~~--~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~ 775 (896)
T PRK13012 698 YLTVMNENYAQPALPEGAEEGILKGMYRLAAAA--EAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRR 775 (896)
T ss_pred EEEecCCCCCCCCCCccchhccccCcEEEeccC--CCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHH
Confidence 9999999884 454442356888999886532 257999999999999999999999988 99999999999999999
Q ss_pred HHH----------------HHhhhhccC-CCceEEEEccccc---cCcchhhcCCccEEeeCcCCCCCCHHHHHHHhCCC
Q 004509 677 QSD----------------AYKESVLPA-AVSARVSIEAGST---FGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 736 (748)
Q Consensus 677 ~~~----------------~~~~~v~~~-~~~~vv~vE~~~~---~G~~~~v~~~~~~ig~d~f~~~G~~~~l~~~~gl~ 736 (748)
+.+ .|+.++++. ..+ +|+++++.. ..|..++..++.++|+|.|+.||++++|+++||+|
T Consensus 776 d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p-~Va~~D~~~aVae~l~~~~~~~~~~LGvD~FG~Sg~~~~L~~~fGld 854 (896)
T PRK13012 776 DGLAAERANLLGPAEEARVPYVTQCLAGTRGP-VVAATDYVRAVPEQIRAFVPARYVTLGTDGFGRSDTRAALRRFFEVD 854 (896)
T ss_pred HHHHHHHHhhcCCCccccccHHHHhhcccCCC-eEEecchHHHHHHHHHHhCCCCeEEEeeCCCCCCCCHHHHHHHhCCC
Confidence 966 566666665 345 588888733 35666666677889999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 004509 737 AEAVITAAKEVC 748 (748)
Q Consensus 737 ~e~I~~~i~~ll 748 (748)
+++|+++++++|
T Consensus 855 a~~Iv~aal~~L 866 (896)
T PRK13012 855 RHSIVLAALKAL 866 (896)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 12
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=5.7e-104 Score=917.61 Aligned_cols=546 Identities=22% Similarity=0.319 Sum_probs=467.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l 161 (748)
++. +.|+++|++||+++++|+.+ ++||+|++||++|++++||+. ||+ +|||||||+||++ |+++++
T Consensus 13 l~~-~~l~~la~~iR~~~i~~~~~-~~GH~g~~ls~vel~~aL~~~---~~~------~rDr~i~s~GH~~---Y~~~~~ 78 (617)
T TIGR00204 13 LSI-DELEKLCDELRRYLLESVSA-SGGHLASGLGTVELTVALHYV---FNT------PKDQFIWDVGHQA---YPHKLL 78 (617)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHhc-cCCCcCcchhHHHHHHHHHhh---CCC------CCCcEEEecchHH---HHHHHH
Confidence 443 34999999999999999984 999999999999999999975 565 8999999999999 999999
Q ss_pred cCCCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcch
Q 004509 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (748)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (748)
+|+ .++|.+||+.+| ++|||++.+.+.+.+++|++|+|++.|+|+|+|.++++ .+.+|||++|||
T Consensus 79 ~G~----~~~l~~~r~~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~~~GDG 143 (617)
T TIGR00204 79 TGR----REKFSTLRQKKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKG----------ADRKTVCVIGDG 143 (617)
T ss_pred hCc----HHHhcchhhcCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhC----------CCCEEEEEECCc
Confidence 995 589999999999 77999987644444699999999999999999999875 378999999999
Q ss_pred hcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccc-------------------------c---cc-HHHH---
Q 004509 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-------------------------T---EN-VDKR--- 289 (748)
Q Consensus 242 ~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~-------------------------~---~~-~~~~--- 289 (748)
+++||++|||+++|+.++|+ +++|+|||+++++++++... . .+ +.++
T Consensus 144 ~~~eG~~~Ea~~~a~~~~l~-~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (617)
T TIGR00204 144 AITAGMAFEALNHAGDLKTD-MIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEE 222 (617)
T ss_pred ccccccHHHHHHHHHhcCCC-EEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99999999999999999995 59999999999999885110 0 01 3333
Q ss_pred -----------HhhCCcEEE-EEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCCCCCCC-CccccCCcCchhhH
Q 004509 290 -----------FEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKAN-SYSVHGSALGAKEV 356 (748)
Q Consensus 290 -----------~~a~G~~~~-~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G~~~~~~-~~~~H~~~~~~~e~ 356 (748)
|++|||+++ .| ||| |+++|.++|+++++ .++|++||++|+||+|++++++ +.+||+.++.+.+
T Consensus 223 ~~k~~~~~~~~f~~~G~~~~~~v-DGh-d~~~l~~al~~ak~-~~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~- 298 (617)
T TIGR00204 223 SMKGLVVPGTFFEELGFNYIGPV-DGH-DLLELIETLKNAKK-LKGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLS- 298 (617)
T ss_pred hhhhccCccchHHHcCCcEEccc-CCC-CHHHHHHHHHHHhc-CCCCEEEEEEecCCCCCchhhcChhhccCCCCCChh-
Confidence 999999999 56 999 99999999999987 6789999999999999999874 4678976421100
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCc
Q 004509 357 DATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESP 436 (748)
Q Consensus 357 ~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~ 436 (748)
.+ ..| .. ...
T Consensus 299 ------~~------------------------------------------------------~~~--------~~--~~~ 308 (617)
T TIGR00204 299 ------TG------------------------------------------------------CLP--------KS--KSA 308 (617)
T ss_pred ------hC------------------------------------------------------CcC--------CC--CCC
Confidence 00 000 00 011
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEE
Q 004509 437 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC 516 (748)
Q Consensus 437 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv 516 (748)
..+++++|+++|.+++++||+++++++|+..+++ +..|++ +||+||||+|||||+|||+|+|||+.| ++||+
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~-----~~~f~~-~fP~R~~d~GIaEq~~vg~AaGlA~~G--~~Pvv 380 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG-----LDKFSR-KFPDRYFDVAIAEQHAVTFAAGMAIEG--YKPFV 380 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC-----hHHHHH-HCccccccCCccHHHHHHHHHHHHHCC--CEEEE
Confidence 3478999999999999999999999999965543 356876 799999999999999999999999999 69999
Q ss_pred EeehhHHHHHHHHHHHh-hccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcC
Q 004509 517 ATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 595 (748)
Q Consensus 517 ~~f~~F~~r~~dqIr~~-a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~ 595 (748)
++|++|++|+||||++. |++++||+|+++++|+. |+||+|||+++|+++||+||||+|++|+|+.|++.+|++|++..
T Consensus 381 ~~~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~ 459 (617)
T TIGR00204 381 AIYSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYD 459 (617)
T ss_pred EecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCC
Confidence 99999999999999775 99999999999999985 89999999999999999999999999999999999999999754
Q ss_pred CCcEEEEEcCCCCCCCCC-CCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhH
Q 004509 596 KRPSILALSRQKLPHLAG-TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 674 (748)
Q Consensus 596 ~~P~~irl~r~~~~~~~~-~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pl 674 (748)
++|+|||++|+..+.++. ...+.+++|+++++++ |+|+|||++|.|+++|++|++.|+++||+++|||++|++||
T Consensus 460 ~~Pv~ir~~r~~~~~~~~~~~~~~~~~Gk~~vlr~----G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPl 535 (617)
T TIGR00204 460 DGPIAVRYPRGNAVGVELTPEPEKLPIGKSEVLRK----GEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPL 535 (617)
T ss_pred CCCEEEEEccCCcCCcccCCccccccCCceEEEEc----CCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcC
Confidence 599999999987754432 2235689999999987 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCCceEEEEcccccc-Ccchhh---------cCCccEEee-CcCCCCCCHHHHHHHhCCCHHHHHHH
Q 004509 675 DEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV---------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITA 743 (748)
Q Consensus 675 d~~~~~~~~~v~~~~~~~vv~vE~~~~~-G~~~~v---------~~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I~~~ 743 (748)
|.+++. +++.+++ . +||+||+... |+++.+ ..++.++|+ |.|+++|++++|+++||||+++|+++
T Consensus 536 D~e~i~--~~~~k~~-~-vvtvEE~~~~GGlGs~v~~~l~~~~~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~ 611 (617)
T TIGR00204 536 DEELIL--EIAASHE-K-LVTVEENAIMGGAGSAVLEFLMDQNKLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAK 611 (617)
T ss_pred CHHHHH--HHHhhcC-e-EEEEECCCCccChHHHHHHHHHhcCCCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHH
Confidence 998874 4444444 3 6999999874 565432 236788999 79999999999999999999999999
Q ss_pred HHHhC
Q 004509 744 AKEVC 748 (748)
Q Consensus 744 i~~ll 748 (748)
|++++
T Consensus 612 i~~~~ 616 (617)
T TIGR00204 612 ILAWL 616 (617)
T ss_pred HHHhh
Confidence 99874
No 13
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4e-102 Score=901.38 Aligned_cols=545 Identities=25% Similarity=0.341 Sum_probs=471.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l 161 (748)
|+. +.|+++|++||+++++|+.+ ++||+|++||++|++++||+. +|+ +|||||||+||++ |+++++
T Consensus 19 ~~~-~~l~~~a~~iR~~~~~~~~~-~~gH~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~GH~~---y~~~~~ 84 (580)
T PRK05444 19 LSE-EELPQLADEIREFLIDVVSK-TGGHLGSNLGVVELTVALHYV---FDT------PKDRIIWDVGHQA---YPHKIL 84 (580)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHh-cCCCcCCCccHHHHHHHHHHh---cCC------CCccEEEeccHHH---HHHHHH
Confidence 544 34999999999999999987 799999999999999999964 553 7999999999999 999999
Q ss_pred cCCCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcch
Q 004509 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (748)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (748)
+|+ .++|++||+.+| ++|||++.++||+++++|++|+|+|.|+|+|+|.++++. .+++|||++|||
T Consensus 85 ~g~----~~~l~~~~~~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~---------~~~~v~~i~GDG 150 (580)
T PRK05444 85 TGR----RDRFDTLRQKGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGG---------EDRKVVAVIGDG 150 (580)
T ss_pred hCc----HHHhcCcccCCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCC---------CCCeEEEEEccc
Confidence 995 689999999999 579999888999999999999999999999999987631 268999999999
Q ss_pred hcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc----ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHH
Q 004509 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA----FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEA 317 (748)
Q Consensus 242 ~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~----~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a 317 (748)
+++||++|||+++|++++ .|+++|+|||+++++++++.. ...++.++|++|||+++.++||| |++++.++++++
T Consensus 151 ~l~eG~~~Eal~~A~~~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~-d~~~l~~al~~a 228 (580)
T PRK05444 151 ALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGH-DLDALIETLKNA 228 (580)
T ss_pred ccccCHHHHHHHHHHhhC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCC-CHHHHHHHHHHH
Confidence 999999999999999999 589999999999999987532 23567889999999999533999 999999999999
Q ss_pred HhcCCCCEEEEEEeeeccCCCCCC-CCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHH
Q 004509 318 KAVTDKPTLIRVTTTIGFGSPNKA-NSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNA 396 (748)
Q Consensus 318 ~~~~~~P~vI~~~T~kg~G~~~~~-~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~ 396 (748)
++ .++|++|+++|+||+|+++++ ++.+||+.++..++. + .
T Consensus 229 ~~-~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~-------~-----------------------~-------- 269 (580)
T PRK05444 229 KD-LKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPET-------G-----------------------E-------- 269 (580)
T ss_pred Hh-CCCCEEEEEEecCCcCCChhhcCccccCCCCCCCccc-------C-----------------------C--------
Confidence 87 679999999999999999885 467899866322110 0 0
Q ss_pred HHHHHHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCcccccccc
Q 004509 397 KFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMF 476 (748)
Q Consensus 397 ~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~ 476 (748)
... + . .....++|++++++|.++++++|+++++++|+.++++ +
T Consensus 270 ----~~~-----------------~--------~---~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~-----~ 312 (580)
T PRK05444 270 ----QPK-----------------S--------S---KPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTG-----L 312 (580)
T ss_pred ----ccc-----------------c--------C---CCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCC-----H
Confidence 000 0 0 0012468999999999999999999999999865543 2
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHh-hccCCCeEEEEecCCCccCCCC
Q 004509 477 GDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDG 555 (748)
Q Consensus 477 ~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~-a~~~~pVi~v~t~~g~~~g~dG 555 (748)
.+|++ +||+||||+||+||+|+|+|+|||+.| ++||+++|++|++|++||||+. |++++||+++++|+|+ .|+||
T Consensus 313 ~~f~~-~~p~R~i~~GIaE~~mvg~A~GlA~~G--~~p~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~-~g~dG 388 (580)
T PRK05444 313 VKFSK-RFPDRYFDVGIAEQHAVTFAAGLATEG--LKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VGADG 388 (580)
T ss_pred HHHHH-HhhhhccCCChHHHHHHHHHHHHHHCC--CeeEEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCc-CCCCC
Confidence 45866 799999999999999999999999999 6999999999999999999985 9999999999999998 47899
Q ss_pred CCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccceeEEecCCCCCCC
Q 004509 556 PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKP 635 (748)
Q Consensus 556 ~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~ 635 (748)
+|||++||+++||+|||++|++|+|+.|+++++++|+++.++|+|||++|+..+..+....+.+++|++.++++ |+
T Consensus 389 ~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~Gk~~vl~~----G~ 464 (580)
T PRK05444 389 PTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGVELPELEPLPIGKGEVLRE----GE 464 (580)
T ss_pred ccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCCCCcccccCCceEEEEc----CC
Confidence 99999999999999999999999999999999999996458999999999987655422235688999998887 68
Q ss_pred CEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccc-cCcchhh------
Q 004509 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------ 708 (748)
Q Consensus 636 dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~v------ 708 (748)
|+|||++|+||++|++|++.|+ +++|||++|++|||.+.+. +.+.+++ .+|++||+.. .||++.+
T Consensus 465 dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~~~i~--~~~~~~~--~vv~vEe~~~~gG~g~~va~~l~~ 536 (580)
T PRK05444 465 DVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDEELLL--ELAAKHD--LVVTVEEGAIMGGFGSAVLEFLAD 536 (580)
T ss_pred CEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCHHHHH--HHHhcCC--eEEEEECCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999996 8999999999999998764 3444443 3699999988 5787643
Q ss_pred ---cCCccEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 709 ---GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 709 ---~~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
..++.++|+ |.|+++|++++|+++||||+++|+++|++++
T Consensus 537 ~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 580 (580)
T PRK05444 537 HGLDVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILELL 580 (580)
T ss_pred hcCCCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHhhC
Confidence 235678999 8999999999999999999999999999874
No 14
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=3.8e-101 Score=898.59 Aligned_cols=624 Identities=23% Similarity=0.263 Sum_probs=506.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~------~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~ 155 (748)
+.+.+++.++++.||+++++|+.+++ +||+|+++|++||+.+||+++||++ +.|.+|| ||+|+||++|++
T Consensus 69 pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~---~~~~~rD-~VlskGHasp~l 144 (889)
T TIGR03186 69 PGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAA---GDASGGD-LVYFQPHSAPGV 144 (889)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCC---CCCCCCC-EEEECCchHHHH
Confidence 56788899999999999999999999 6999999999999999999999963 3477888 799999999999
Q ss_pred HHHHHHcCCCCCCHHHHhhhhhc--CCCCCCCCCCCCCC-ccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCc
Q 004509 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (748)
Q Consensus 156 Ya~~~l~G~~~~~~~~l~~~r~~--~s~~~Ghp~~~~~p-gi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~ 232 (748)
|+.+++.||+ +.++|++||+. ++.+++||.+...| +++++||+||+|++.|+|+|++.|+++.+|.+. ..++
T Consensus 145 YA~l~l~G~l--~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~---~~~~ 219 (889)
T TIGR03186 145 YARAFLEGFL--SDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLAR---TEGR 219 (889)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccC---CCCc
Confidence 9999999985 99999999998 66777877665556 699999999999999999999999887663221 2579
Q ss_pred EEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc--cccccHHHHHhhCCcEEEEEc---------
Q 004509 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVK--------- 301 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~--------- 301 (748)
+|||++||||++||++|||+.+|++++|+|||+|+|+|++++++++.. ...+++.++|++|||++++|+
T Consensus 220 rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~ 299 (889)
T TIGR03186 220 KVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALF 299 (889)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhh
Confidence 999999999999999999999999999999999999999999999974 336899999999999999985
Q ss_pred -----------------------------------------------------------cCCCCHHHHHHHHHHHHhcCC
Q 004509 302 -----------------------------------------------------------NGNTGYDDIRAAIKEAKAVTD 322 (748)
Q Consensus 302 -----------------------------------------------------------dG~~D~~~l~~al~~a~~~~~ 322 (748)
||| |+++|++|+++|++..+
T Consensus 300 ~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGH-D~~~i~~A~~~A~~~~~ 378 (889)
T TIGR03186 300 ARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGH-DARKLYAAYDRAVRHEG 378 (889)
T ss_pred ccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 699 99999999999987457
Q ss_pred CCEEEEEEeeeccCCCCCC-CCccccC-CcCchhhHHHHHHhcCCCCCCCCCchhHH---HHHHHHHhhhhhhHHHHHHH
Q 004509 323 KPTLIRVTTTIGFGSPNKA-NSYSVHG-SALGAKEVDATRKNLGWPYEPFHVPEDVK---KHWSRHVAEGATLEAEWNAK 397 (748)
Q Consensus 323 ~P~vI~~~T~kg~G~~~~~-~~~~~H~-~~~~~~e~~~~~~~~~~~~~~~~v~~e~~---~~~~~~~~~g~~~~~~~~~~ 397 (748)
+||+|.++|+||+|.+.++ +.+.+|+ .+++.++++++++++++|.. +|-+ .+|+
T Consensus 379 ~PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~-----de~~~~~~~~~---------------- 437 (889)
T TIGR03186 379 RPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLS-----DADVEQLKFYK---------------- 437 (889)
T ss_pred CCEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCC-----hHHhhcccccC----------------
Confidence 9999999999999997764 3578899 78999999999999998531 1100 0111
Q ss_pred HHHHHhhCHHHHHHH-H--HHhcCCCCCcccc-----cCCC------CCC--CCcchhHHHHHHHHHHHHHH---hCCCE
Q 004509 398 FAEYEKKYPEEAAEF-K--SISSGQLPAGWEK-----ALPT------YTP--ESPAEATRNLSQTCLNALAK---TLPGL 458 (748)
Q Consensus 398 ~~~~~~~~p~~~~~~-~--~~l~~~~p~~~~~-----~~p~------~~~--~~~~~~~r~a~~~~L~~l~~---~~p~v 458 (748)
..+..|+. +++ + ..+.|.+|..... .+|. +.. .++.++|+.||+++|..|++ ..++|
T Consensus 438 ---~~~~s~~~-~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~ri 513 (889)
T TIGR03186 438 ---PDEDSAEM-RYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRI 513 (889)
T ss_pred ---CCCCCHHH-HHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCE
Confidence 00011111 111 1 1244454433211 1232 221 23578999999999777666 56779
Q ss_pred EEEecCCCCCccc--ccc------------------ccccccccCCCCCccccccchHHHHH--HHHHHHhc--CCCCcc
Q 004509 459 LGGSADLASSNMT--LLK------------------MFGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPGLIP 514 (748)
Q Consensus 459 v~~saDl~~s~~~--~~k------------------~~~~f~~~~~p~R~id~GIaE~~~vg--~AaGlA~~--G~~~~P 514 (748)
|.+.+|++.+++. .+. .+..|+ +.+|+|||++||+||+|++ +|+|+|+. |.|++|
T Consensus 514 V~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~-e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iP 592 (889)
T TIGR03186 514 VPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYR-EDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLP 592 (889)
T ss_pred EEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHh-hcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceE
Confidence 9999999877632 111 112343 4799999999999999999 99997665 544799
Q ss_pred EEEeehhHH-HHHHHHHHHhhccCCCeEEEEecCCC-ccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHH
Q 004509 515 YCATFFVFT-DYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV 592 (748)
Q Consensus 515 iv~~f~~F~-~r~~dqIr~~a~~~~pVi~v~t~~g~-~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~ 592 (748)
|+.+|+.|. +|++||||+.|+++.+|+++++++|. ++|++|+|||++||++++|+||||+||.|+|+.|++.+++.++
T Consensus 593 f~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~ 672 (889)
T TIGR03186 593 FYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGM 672 (889)
T ss_pred EEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 999999996 79999999999999999999999999 6999999999999999999999999999999999999999877
Q ss_pred H----c-CCCcEEEEEcCCCC--CCCCCCCcccccc----ceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC-C
Q 004509 593 A----N-RKRPSILALSRQKL--PHLAGTSIDGVEK----GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-G 660 (748)
Q Consensus 593 ~----~-~~~P~~irl~r~~~--~~~~~~~~~~~~~----G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~-G 660 (748)
+ . .++|+|||++|.+. |.++++....+.. |.|++.+.. ..|+||+|+++|.|+++|++||+.|+++ |
T Consensus 673 ~rm~~~~~~gp~YlRl~r~~~~~p~~~~~~~~~~~~gi~kg~y~l~~~~-~~g~dV~LlasG~~v~eAL~AAe~L~~~~G 751 (889)
T TIGR03186 673 REMLERQRDEFYYLTVTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAA-LAAARVQLLGSGAILGEVQAAARLLRDDWG 751 (889)
T ss_pred HHHHhcCCCceEEEEeCCCCCCCCCcCCCcccchhcchhheeeEeeccC-CCCCCEEEEeccHHHHHHHHHHHHHhhhhC
Confidence 5 1 47999999999977 5555431112333 337776311 0268999999999999999999999986 9
Q ss_pred CcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccc---cc-cCcch---------------------hhcCCccEE
Q 004509 661 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG---ST-FGWEK---------------------IVGSKGKAI 715 (748)
Q Consensus 661 i~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~---~~-~G~~~---------------------~v~~~~~~i 715 (748)
|+++||||+|+||||++.+. +.+.+ .++++|+| .. .|++. ++..++.++
T Consensus 752 I~a~V~sv~SikpLdrd~i~----a~r~~--~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~p~~~~~L 825 (889)
T TIGR03186 752 IDAAVWSVTSFTELARDGRA----AERAQ--RLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTL 825 (889)
T ss_pred CCeEEEECCCCCHhHHHHHH----HHHhC--CcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhCCCCEEEe
Confidence 99999999999999999874 22333 36999997 43 34443 123466789
Q ss_pred eeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 716 GIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 716 g~d~f~~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
|+|+|+.+|++++|+++||||+++|+.+++++|
T Consensus 826 G~D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L 858 (889)
T TIGR03186 826 GTDGFGRSDTRAALRAFFEVDRASIVIAALQAL 858 (889)
T ss_pred ccCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 15
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=8.5e-102 Score=901.91 Aligned_cols=543 Identities=24% Similarity=0.340 Sum_probs=464.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCC
Q 004509 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (748)
Q Consensus 86 ~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~ 165 (748)
+.|+++|++||.++++|+.++ +||+|++||++||+++||+. ||. +|||||||+||++ |++++|+|+
T Consensus 24 ~~l~~~a~~iR~~ii~~~~~~-~GH~g~~ls~vel~~aL~~~---~~~------prDr~i~s~GH~~---Y~~~~l~g~- 89 (641)
T PRK12571 24 AELEQLADELRAEVISAVSET-GGHLGSSLGVVELTVALHAV---FNT------PKDKLVWDVGHQC---YPHKILTGR- 89 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCcCCCchHHHHHHHHHHh---cCC------CCCcEEEECchHH---HHHHHHhCC-
Confidence 449999999999999999986 79999999999999999954 552 4999999999999 999999994
Q ss_pred CCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcch
Q 004509 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (748)
Q Consensus 166 ~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (748)
.++|.+||+.+| ++|||++.++|++.+..|+-|.+++.|+|+|++.++.+ .+++|||++|||+++|
T Consensus 90 ---~~~l~~~r~~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~----------~~~~v~~v~GDG~~~e 155 (641)
T PRK12571 90 ---RDRFRTLRQKGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQ----------PDGDVVAVIGDGSLTA 155 (641)
T ss_pred ---HHHHhhhhhCCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhC----------CCCeEEEEEeCchhhc
Confidence 789999999999 56999988899988888887888999999999998764 3789999999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc--------cccccH-------------------------------
Q 004509 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--------AFTENV------------------------------- 286 (748)
Q Consensus 246 G~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~--------~~~~~~------------------------------- 286 (748)
|++||++++|+++++ |+++|+|||+++++++++. ...+.+
T Consensus 156 G~~~Eal~~a~~~~~-~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (641)
T PRK12571 156 GMAYEALNNAGAADR-RLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTG 234 (641)
T ss_pred chHHHHHHHHHHhCC-CEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Confidence 999999999999997 8999999999999999851 112111
Q ss_pred ----HHHHhhCCcEEE-EEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCCCCCCC-CccccCCcCchhhHHHHH
Q 004509 287 ----DKRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKAN-SYSVHGSALGAKEVDATR 360 (748)
Q Consensus 287 ----~~~~~a~G~~~~-~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G~~~~~~-~~~~H~~~~~~~e~~~~~ 360 (748)
.++|++|||+|+ .| ||| |+++|.+||+++++..++|++||++|+||+|++++++ ..+|||.+.
T Consensus 235 ~~~~~~~f~a~G~~~~~~v-dGh-d~~~l~~al~~ak~~~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~--------- 303 (641)
T PRK12571 235 MIGGGTLFEELGFTYVGPI-DGH-DMEALLSVLRAARARADGPVLVHVVTEKGRGYAPAEADEDKYHAVGK--------- 303 (641)
T ss_pred ccchhhHHHHcCCEEECcc-CCC-CHHHHHHHHHHHHhCCCCCEEEEEEecCccCcchhhcCCCcccCCCC---------
Confidence 479999999999 56 999 9999999999998645799999999999999998875 579998751
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhH
Q 004509 361 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEAT 440 (748)
Q Consensus 361 ~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~ 440 (748)
|.+.. +... + + .....++
T Consensus 304 ---------f~~~~------------~~~~------------~-----------------~------------~~~~~~~ 321 (641)
T PRK12571 304 ---------FDVVT------------GLQK------------K-----------------S------------APSAPSY 321 (641)
T ss_pred ---------cCCCC------------Cccc------------C-----------------C------------CccchhH
Confidence 11100 0000 0 0 0012367
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeeh
Q 004509 441 RNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFF 520 (748)
Q Consensus 441 r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~ 520 (748)
|++|+++|.+++++||+++++++|+.++++ +..|++ +||+||||+||+||+|+|+|+|||+.| ++||+++|+
T Consensus 322 ~~~f~~~L~~la~~d~~iv~isadl~~~~~-----~~~f~~-~~p~R~id~GIaE~~mvg~AaGlA~~G--~~P~v~~f~ 393 (641)
T PRK12571 322 TSVFGEELTKEAAEDSDIVAITAAMPLGTG-----LDKLQK-RFPNRVFDVGIAEQHAVTFAAGLAAAG--LKPFCAVYS 393 (641)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCccCCCC-----hHHHHH-hCCCcccccCccHHHHHHHHHHHHHCC--CEEEEEehH
Confidence 889999999999999999999999976543 356866 799999999999999999999999988 699999999
Q ss_pred hHHHHHHHHHHH-hhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcE
Q 004509 521 VFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPS 599 (748)
Q Consensus 521 ~F~~r~~dqIr~-~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~ 599 (748)
+|++|++||||+ .|++++||+++++++|+ .|+||+|||+++|+++||+||||+|++|+|+.|+++++++|++..++|+
T Consensus 394 ~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~-~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~ 472 (641)
T PRK12571 394 TFLQRGYDQLLHDVALQNLPVRFVLDRAGL-VGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPI 472 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEECCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcE
Confidence 999999999977 59999999999988888 4899999999999999999999999999999999999999997448999
Q ss_pred EEEEcCCCCCCCC-CCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHH
Q 004509 600 ILALSRQKLPHLA-GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 678 (748)
Q Consensus 600 ~irl~r~~~~~~~-~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~ 678 (748)
|||++|+..+... ....+.+++|++.++++ |+|+|||++|+|+++|++|++.|+++||+++|||+++++|||.+.
T Consensus 473 ~ir~~r~~~~~~~~~~~~~~~~~gk~~vlr~----G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~ 548 (641)
T PRK12571 473 AVRFPRGEGVGVEIPAEGTILGIGKGRVPRE----GPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEAL 548 (641)
T ss_pred EEEEecCcCCccccCCCCccccCceeEEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHH
Confidence 9999998765322 11224578899888887 789999999999999999999999999999999999999999976
Q ss_pred HHHhhhhccCCCceEEEEccc-cccCcchhh------------cCCccEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHH
Q 004509 679 DAYKESVLPAAVSARVSIEAG-STFGWEKIV------------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAA 744 (748)
Q Consensus 679 ~~~~~~v~~~~~~~vv~vE~~-~~~G~~~~v------------~~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I~~~i 744 (748)
+ .++.+++ .+ +++||+ ...||++.+ ..++.++|+ |.|+++|+.++++++||||+++|+++|
T Consensus 549 i---~sv~k~~-~v-vvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i 623 (641)
T PRK12571 549 T---DLLVRHH-IV-VIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAV 623 (641)
T ss_pred H---HHHhhhC-CE-EEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHH
Confidence 5 4677776 33 555555 457787643 235678999 899999999999999999999999999
Q ss_pred HHhC
Q 004509 745 KEVC 748 (748)
Q Consensus 745 ~~ll 748 (748)
++++
T Consensus 624 ~~~l 627 (641)
T PRK12571 624 TGAL 627 (641)
T ss_pred HHHH
Confidence 8864
No 16
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.1e-101 Score=884.78 Aligned_cols=504 Identities=23% Similarity=0.313 Sum_probs=434.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCC
Q 004509 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (748)
Q Consensus 85 ~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~ 164 (748)
.+.|+++|++||+.+++|+.+. +||+|++||++||+++||+. || + +|||||||+||++ |+|++++|+
T Consensus 81 ~~~L~~la~eiR~~ii~~~~~~-~GHlgssLs~vEl~~aL~~v---f~--~----p~DriI~s~GHqa---ya~~~ltgr 147 (641)
T PLN02234 81 IKELKVLSDELRSDVIFNVSKT-GGHLGSNLGVVELTVALHYI---FN--T----PHDKILWDVGHQS---YPHKILTGR 147 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCccccchHHHHHHHHHHh---cC--C----CCCeEEEecchhH---HHHHHHHhh
Confidence 4569999999999999999985 99999999999999999975 44 2 4899999999999 999999995
Q ss_pred CCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcc
Q 004509 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (748)
Q Consensus 165 ~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (748)
.++|.+||+.+| +.|||++.++||+++++|++|+|||+|+|+|+|.++++ .+++|||++||||++
T Consensus 148 ----~~~l~t~r~~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g----------~~~~v~~viGDGel~ 212 (641)
T PLN02234 148 ----RGKMKTIRQTNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKG----------MNNSVVSVIGDGAMT 212 (641)
T ss_pred ----hhhhcccccCCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCC----------CCCeEEEEEccchhh
Confidence 468999999999 67999998999999999999999999999999999876 378999999999999
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEEECCCCc------cccccccc-cc---------------ccHHHHHhhCCcEEE-EEc
Q 004509 245 EGIANEASSLAGHLGLGKLIAFYDDNHIS------IDGDTEIA-FT---------------ENVDKRFEGLGWHVI-WVK 301 (748)
Q Consensus 245 eG~~~Eal~~A~~~~L~~li~Ivd~N~~~------i~~~~~~~-~~---------------~~~~~~~~a~G~~~~-~v~ 301 (748)
||++|||++.|++.+ +|+++|+|||+++ +++++... .. +++..+|++|||+++ .|
T Consensus 213 eG~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~v- 290 (641)
T PLN02234 213 AGQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPV- 290 (641)
T ss_pred hHHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeE-
Confidence 999999999999665 8999999999994 56655421 11 367889999999999 66
Q ss_pred cCCCCHHHHHHHHHHHHhcC-CCCEEEEEEeeeccCCCCCCC-CccccCCcC-chhhHHHHHHhcCCCCCCCCCchhHHH
Q 004509 302 NGNTGYDDIRAAIKEAKAVT-DKPTLIRVTTTIGFGSPNKAN-SYSVHGSAL-GAKEVDATRKNLGWPYEPFHVPEDVKK 378 (748)
Q Consensus 302 dG~~D~~~l~~al~~a~~~~-~~P~vI~~~T~kg~G~~~~~~-~~~~H~~~~-~~~e~~~~~~~~~~~~~~~~v~~e~~~ 378 (748)
||| |+++|.++|++++... ++|++||++|+||+|++++++ ..+||+... +++..+ ++
T Consensus 291 DGH-d~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~-----------~~-------- 350 (641)
T PLN02234 291 DGH-NIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGK-----------QF-------- 350 (641)
T ss_pred CCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccc-----------cc--------
Confidence 999 9999999999987632 589999999999999999986 678997542 111000 00
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCE
Q 004509 379 HWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGL 458 (748)
Q Consensus 379 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~v 458 (748)
. + .....+++++|+++|.+++++||++
T Consensus 351 --------------------------------------~---~------------~~~~~sy~~af~~aL~e~a~~D~~I 377 (641)
T PLN02234 351 --------------------------------------K---N------------ISKTQSYTSCFVEALIAEAEADKDI 377 (641)
T ss_pred --------------------------------------c---C------------CCCCCCHHHHHHHHHHHHHHHCcCE
Confidence 0 0 0012467899999999999999999
Q ss_pred EEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHh-hccC
Q 004509 459 LGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCE 537 (748)
Q Consensus 459 v~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~-a~~~ 537 (748)
+++++|++++++ ++.|++ +||+||||+|||||+|||+|+|||+.| ++|||++|++|++|++|||++. |+++
T Consensus 378 v~l~adm~ggt~-----~~~f~~-~fPdR~fdvGIAEq~~Vg~AaGLA~~G--~rPvv~~fs~Fl~RA~DQI~~dva~~~ 449 (641)
T PLN02234 378 VAIHAAMGGGTM-----LNLFES-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCTIYSSFMQRAYDQVVHDVDLQK 449 (641)
T ss_pred EEEECCCCCCcc-----hHHHHH-HccccccCCCcCHHHHHHHHHHHHHCC--CeEEEEehHHHHHHHHHHHHHHHhhcC
Confidence 999999976443 466866 799999999999999999999999999 6999999999999999999775 9999
Q ss_pred CCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CC-
Q 004509 538 AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GT- 614 (748)
Q Consensus 538 ~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~--~~- 614 (748)
+||+|++++.|+ .|+||+|||+++|+++||+||||+|++|+|+.|++.++++|+...++|+|||++|+..+... ..
T Consensus 450 lpV~~v~~~aG~-~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~ 528 (641)
T PLN02234 450 LPVRFAIDRAGL-MGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGN 528 (641)
T ss_pred CCEEEEEeCCcc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCC
Confidence 999999988887 58899999999999999999999999999999999999998865579999999998764322 11
Q ss_pred CccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEE
Q 004509 615 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARV 694 (748)
Q Consensus 615 ~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv 694 (748)
....+++|+++++++ |+|+|||++|+||++|++|++.|+++||+++|||++|++|||.+.+ .++.+++. .+|
T Consensus 529 ~~~~~~iGk~~vlre----G~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i---~sl~k~~~-~vV 600 (641)
T PLN02234 529 KGVPLQIGRGRILRD----GERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALI---RSLAKSHE-VLI 600 (641)
T ss_pred ccccccCceEEEEEe----CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHH---HHHHHhCC-EEE
Confidence 123578999998887 7899999999999999999999999999999999999999999875 46777764 469
Q ss_pred EEccccccCcchhh
Q 004509 695 SIEAGSTFGWEKIV 708 (748)
Q Consensus 695 ~vE~~~~~G~~~~v 708 (748)
|+||+...|+++.+
T Consensus 601 t~Ee~~~GG~Gs~V 614 (641)
T PLN02234 601 TVEEGSIGGFGSHV 614 (641)
T ss_pred EECCCCCCcHHHHH
Confidence 99999998887654
No 17
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.1e-100 Score=878.29 Aligned_cols=526 Identities=19% Similarity=0.210 Sum_probs=456.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcC
Q 004509 85 AALVEKSVNTIRFLAVDAV-EKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (748)
Q Consensus 85 ~~~l~~la~~iR~~~~~~~-~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G 163 (748)
.+.|++||+|||..+++.+ ++ ++||+|++||+||+++|||+. ||+ ++|++|||.|||+ |+|++|||
T Consensus 93 ~~eL~~La~EiR~~li~~v~s~-~GGHl~snLGvVELTvALH~V---Fd~------p~DkiiwDvgHQ~---Y~HKiLTG 159 (701)
T PLN02225 93 VKELKLLADEIRTELHSVLWKK-TQKSMNPSFAAIELTLALHYV---FRA------PVDNILWDAVEQT---YAHKVLTR 159 (701)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-cCCCcCCCccHHHHHHHHHHH---hCC------CCCceeecccccc---chhhHhcC
Confidence 3569999999999999999 56 899999999999999999999 886 8999999999999 99999999
Q ss_pred CCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc
Q 004509 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (748)
Q Consensus 164 ~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (748)
+ .+.+.+ ||.+|.+ |||++.|++++.|.+||.++++|+|+|||.|+.+++. +++||++||||++
T Consensus 160 R----~~~f~~-Rq~~Gls-Gf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~----------~~~vvaVIGDGal 223 (701)
T PLN02225 160 R----WSAIPS-RQKNGIS-GVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGK----------RDRVVAVIDNATI 223 (701)
T ss_pred C----hhhcCc-cccCCcC-CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC----------CCcEEEEEcCcch
Confidence 5 678887 9999987 9999999999999999999999999999999998763 7789999999999
Q ss_pred chhhHHHHHHHHHHcCCCcEEEEEECCCCccccc--------cccc--------c------------------c------
Q 004509 244 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD--------TEIA--------F------------------T------ 283 (748)
Q Consensus 244 ~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~--------~~~~--------~------------------~------ 283 (748)
..||+|||||.|+..+ .|+|||+|||+|+|+.+ ++.. . .
T Consensus 224 tgGma~EaLN~~g~~~-~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~ 302 (701)
T PLN02225 224 TAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEW 302 (701)
T ss_pred hhhhHHHHHhhhhccC-CCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999987 59999999999999998 3310 0 0
Q ss_pred -ccH-----------H-HHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCC--CCEEEEEEeeeccCCCCCCCCccccC
Q 004509 284 -ENV-----------D-KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTD--KPTLIRVTTTIGFGSPNKANSYSVHG 348 (748)
Q Consensus 284 -~~~-----------~-~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~--~P~vI~~~T~kg~G~~~~~~~~~~H~ 348 (748)
..+ . .+|+++|++|+.++||| |+++|.++|+++++ .+ +|++||+.|.||+...
T Consensus 303 ~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGH-di~~Li~~l~~~k~-~~~~~PvlvHv~T~KGkd~~---------- 370 (701)
T PLN02225 303 AAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGH-NIEDLVCVLREVSS-LDSMGPVLVHVITEENRDAE---------- 370 (701)
T ss_pred HHHHHHHhhhccCCCccCcHHHcCCeEECccCCC-CHHHHHHHHHHHHc-CCCCCCEEEEEEecCCCCCC----------
Confidence 000 1 47899999999999999 99999999999997 44 9999999999997100
Q ss_pred CcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccccC
Q 004509 349 SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKAL 428 (748)
Q Consensus 349 ~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~ 428 (748)
. | . +.
T Consensus 371 ------t--------g---~-~~--------------------------------------------------------- 375 (701)
T PLN02225 371 ------T--------G---K-NI--------------------------------------------------------- 375 (701)
T ss_pred ------C--------C---C-cC---------------------------------------------------------
Confidence 0 0 0 00
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhc
Q 004509 429 PTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 508 (748)
Q Consensus 429 p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~ 508 (748)
......+++++|+++|.+++++||+++++++|+..+++ +..|++ +||+||||+|||||+||++|+|||+.
T Consensus 376 ----~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg-----l~~f~~-~fPdRffDvGIAEQhaVt~AAGLA~~ 445 (701)
T PLN02225 376 ----MVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS-----LITFQE-RFPDRFFNVGMAEQHAVTFSAGLSSG 445 (701)
T ss_pred ----CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc-----HHHHHH-HccccccccCccHHHHHHHHHHHHHC
Confidence 00012468889999999999999999999999975443 366876 89999999999999999999999999
Q ss_pred CCCCccEEEeehhHHHHHHHHHHHh-hccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHH
Q 004509 509 SPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 587 (748)
Q Consensus 509 G~~~~Piv~~f~~F~~r~~dqIr~~-a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~ 587 (748)
| ++|||++|++|++|+||||++. |++++||+|++.++|+ .|+||+|||+++|+++||+||||+|++|+|+.|++.|
T Consensus 446 G--~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGl-vg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~m 522 (701)
T PLN02225 446 G--LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGL-VGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNM 522 (701)
T ss_pred C--CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCcc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHH
Confidence 9 6999999999999999998875 9999999999988776 5789999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEcCCCCCCCC--CCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEE
Q 004509 588 YKVAVANRKRPSILALSRQKLPHLA--GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 665 (748)
Q Consensus 588 l~~a~~~~~~P~~irl~r~~~~~~~--~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~V 665 (748)
|++|+...++|+|||++|+..+..+ .+..+.+++|+++++++ |+|++||++|+|+++|++|++.|+++||+++|
T Consensus 523 L~~A~~~~~gPv~IR~pRg~~~~~~~~~~~~~~~~iGK~~vlre----G~dvtIia~G~mv~~Al~AA~~L~~~GI~vtV 598 (701)
T PLN02225 523 VATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVE----GQDVALLGYGAMVQNCLHAHSLLSKLGLNVTV 598 (701)
T ss_pred HHHHHhcCCCCEEEEecccccCCCCcCCCCCccccCcceEEEEe----CCCEEEEeccHHHHHHHHHHHHHHhcCCCEEE
Confidence 9998865679999999998765432 11125688999988887 79999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhc------------CCccEEee-CcCCCCCCHHHHHHH
Q 004509 666 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKGKAIGI-DRFGASAPAGKIYKE 732 (748)
Q Consensus 666 Id~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~------------~~~~~ig~-d~f~~~G~~~~l~~~ 732 (748)
||++|++|||.+.+. +.+.+++ .+||+|||...|+++.+. .++.++|+ |+|+++|++++|+++
T Consensus 599 Idlr~ikPLD~e~I~--~~~~k~~--~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~ 674 (701)
T PLN02225 599 ADARFCKPLDIKLVR--DLCQNHK--FLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLAL 674 (701)
T ss_pred EecCCCCCCCHHHHH--HHHhhcC--eEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHH
Confidence 999999999999874 3443433 479999999877765331 24567999 899999999999999
Q ss_pred hCCCHHHHHHHHHHhC
Q 004509 733 FGITAEAVITAAKEVC 748 (748)
Q Consensus 733 ~gl~~e~I~~~i~~ll 748 (748)
||||+++|+++|++++
T Consensus 675 ~GLdae~I~~~i~~~l 690 (701)
T PLN02225 675 AGLTGHHIAATALSLL 690 (701)
T ss_pred hCcCHHHHHHHHHHHH
Confidence 9999999999998764
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.6e-98 Score=863.65 Aligned_cols=544 Identities=21% Similarity=0.285 Sum_probs=464.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l 161 (748)
++ .+.|++||++||.++++.+.+ .+||++++||++|++++|++. ||+ ++|+||||+||++ |+|+.+
T Consensus 15 l~-~~~l~~l~~~ir~~~~~~~~~-~~Gh~~~~lg~vel~~al~~~---f~~------~~D~ii~d~ghr~---~~~~l~ 80 (581)
T PRK12315 15 LS-LDELEQLASEIRTALLEKDSA-HGGHVGPNLGVVELTIALHYV---FNS------PKDKIVWDVSHQS---YPHKML 80 (581)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHh-cCCCcCcchhHHHHHHHHHhh---cCC------CCCcEEEecCCch---HHHHHH
Confidence 44 566999999999999999976 799999999999999999877 775 6899999999999 999999
Q ss_pred cCCCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcch
Q 004509 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (748)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (748)
+|+ .....+.|++++.+ |||.+.+++++.+.+|+.|+++|.|+|+|+|.++++ .+++|||++|||
T Consensus 81 ~G~----~~~~~~~~~~g~~~-G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~----------~~~~vv~~iGDG 145 (581)
T PRK12315 81 TGR----KEAFLDPDHYDDVT-GYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKG----------EKGNIIAVIGDG 145 (581)
T ss_pred cCC----ccchhhHHHcCCCC-CCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcC----------CCCeEEEEECch
Confidence 996 23445566666655 899887777777899999999999999999999875 378999999999
Q ss_pred hcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc----------cccccHHHHHhhCCcEEEEEccCCCCHHHHH
Q 004509 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIR 311 (748)
Q Consensus 242 ~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~ 311 (748)
+++||++|||||+|+.|++ |+++|+|||+|+|++++.. ....++.++|++|||++++|+||| |++++.
T Consensus 146 ~~~eG~~~EAln~A~~~k~-~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~-D~~~l~ 223 (581)
T PRK12315 146 SLSGGLALEGLNNAAELKS-NLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGN-DIESLI 223 (581)
T ss_pred hhhcchHHHHHHHHHhhCC-CEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCC-CHHHHH
Confidence 9999999999999999996 9999999999999988741 123456789999999999988999 999999
Q ss_pred HHHHHHHhcCCCCEEEEEEeeeccCCCCC-CCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhh
Q 004509 312 AAIKEAKAVTDKPTLIRVTTTIGFGSPNK-ANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 390 (748)
Q Consensus 312 ~al~~a~~~~~~P~vI~~~T~kg~G~~~~-~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~ 390 (748)
+++++|++ .++|++||++|+||+|++++ ++..+||+.. ||.+.. +.
T Consensus 224 ~a~~~a~~-~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~------------------~f~~~~------------~~-- 270 (581)
T PRK12315 224 EAFKEVKD-IDHPIVLHIHTLKGKGYQPAEENKEAFHWHM------------------PFDLET------------GQ-- 270 (581)
T ss_pred HHHHHHHh-CCCCEEEEEEeecCCCCChhhcCHHhcCCCC------------------CCCccc------------Cc--
Confidence 99999987 78999999999999999764 6667888742 111100 00
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCcc
Q 004509 391 EAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNM 470 (748)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~ 470 (748)
..+ +. ...+++++++++|.+++++||+++++++|+.++.+
T Consensus 271 ----------------------------~~~-------~~-----~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~ 310 (581)
T PRK12315 271 ----------------------------SKV-------PA-----SGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG 310 (581)
T ss_pred ----------------------------ccC-------CC-----CCcCHHHHHHHHHHHHhccCCCEEEEeCccccccC
Confidence 000 00 02367889999999999999999999999866554
Q ss_pred ccccccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHh-hccCCCeEEEEecCCC
Q 004509 471 TLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSI 549 (748)
Q Consensus 471 ~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~-a~~~~pVi~v~t~~g~ 549 (748)
+.+|++ +||+||||+|||||+|+++|+|||+.| ++||+++|++|++|++|||++. |++++||+|+++++|+
T Consensus 311 -----~~~f~~-~fP~R~id~GIaEq~~v~~AaGlA~~G--~~Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~ 382 (581)
T PRK12315 311 -----LKEFRK-KYPDQYVDVGIAEQESVAFASGIAANG--ARPVIFVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSI 382 (581)
T ss_pred -----cHHHHH-hccccccCCCchHHHHHHHHHHHHHCc--CeEEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCcc
Confidence 356866 799999999999999999999999999 6999999999999999999875 9999999999998888
Q ss_pred ccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccceeEEecC
Q 004509 550 GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDN 629 (748)
Q Consensus 550 ~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~ 629 (748)
+ + ||+|||++||+++||+||||+|++|+|+.|++.++++|++..++|+|||++|+..+..+..+ ..+..|++.++++
T Consensus 383 ~-~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~~~~-~~~~~~k~~v~~~ 459 (581)
T PRK12315 383 S-G-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGPTVD-TDYSTLKYEVTKA 459 (581)
T ss_pred c-C-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCCCCc-cCcccceEEEEec
Confidence 5 4 99999999999999999999999999999999999999964479999999999887654322 2355678888887
Q ss_pred CCCCCCCEEEEEeChhHHHHHHHHHHHHhC-CCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcccccc-Ccchh
Q 004509 630 SSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI 707 (748)
Q Consensus 630 ~~~~g~dvtlva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~-G~~~~ 707 (748)
|+|+|||++|+|+++|++|++.|+++ ||+++|||++|++|||++.+. ++.++.. .+||+|||... ||++.
T Consensus 460 ----g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~---~~~~~~~-~vvtvEe~~~~GG~gs~ 531 (581)
T PRK12315 460 ----GEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLE---KLKEDHE-LVVTLEDGILDGGFGEK 531 (581)
T ss_pred ----CCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHH---HHHhhCC-EEEEEcCCCcCCCHHHH
Confidence 68999999999999999999999988 999999999999999999764 4555554 46999999875 57654
Q ss_pred h----c---CCccEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 708 V----G---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 708 v----~---~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
+ . .++.++|+ |.|+.+|++++|++++|||+++|+++|++++
T Consensus 532 v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 532 IARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred HHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3 2 24568999 7899999999999999999999999999874
No 19
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=1.8e-96 Score=859.53 Aligned_cols=626 Identities=24% Similarity=0.280 Sum_probs=503.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~~------GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~ 155 (748)
..+.++.+++++.||+++++|+.++++ ||+|+++|+++|+.+||.++||. |++| .+|| ||+|+||++|++
T Consensus 75 pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~-~~~~--~~~D-~V~skGHasp~l 150 (891)
T PRK09405 75 PGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRA-PNEP--HGGD-LVFFQGHASPGI 150 (891)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCC-CCCC--CCCC-EEEECchHHHHH
Confidence 556778888999999999999999987 99999999999999999999984 4555 4677 899999999999
Q ss_pred HHHHHHcCCCCCCHHHHhhhhhc--CCCCCCCCCCCCCC-ccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCc
Q 004509 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (748)
Q Consensus 156 Ya~~~l~G~~~~~~~~l~~~r~~--~s~~~Ghp~~~~~p-gi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~ 232 (748)
||.+++.|++ +.++|.+||+. ++.++|||.++..| +++++||+||+|++.|+|+|++.|++..+ +-.+..++
T Consensus 151 YA~~~l~G~l--~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~---~~~~~~~~ 225 (891)
T PRK09405 151 YARAFLEGRL--TEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENR---GLKDTSDQ 225 (891)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCcccccc---ccccCCCc
Confidence 9999999985 99999999998 77888999987777 58999999999999999999999876422 11223589
Q ss_pred EEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc--cccccHHHHHhhCCcEEEEEc---------
Q 004509 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVK--------- 301 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~--------- 301 (748)
+|||++||||++||.+|||+.+|++++|+|||+|+|+|.+++++++.. ...+++.++|++|||++++|+
T Consensus 226 rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~ 305 (891)
T PRK09405 226 KVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLL 305 (891)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhh
Confidence 999999999999999999999999999999999999999999999974 346899999999999999984
Q ss_pred ----------------c-------------------------------------------CCCCHHHHHHHHHHHHhcCC
Q 004509 302 ----------------N-------------------------------------------GNTGYDDIRAAIKEAKAVTD 322 (748)
Q Consensus 302 ----------------d-------------------------------------------G~~D~~~l~~al~~a~~~~~ 322 (748)
| || |+++|++|+++|++..+
T Consensus 306 ~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGH-D~~~i~~A~~~A~~~~~ 384 (891)
T PRK09405 306 AKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGH-DPRKVYAAYKAAVEHKG 384 (891)
T ss_pred ccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCC-CHHHHHHHHHHHHhCCC
Confidence 4 99 99999999999987458
Q ss_pred CCEEEEEEeeeccCC-CCCCCCccccC-CcCchhhHHHHHHhcCCCC-------CCCCCchhHHHHHHHHHhhhhhhHHH
Q 004509 323 KPTLIRVTTTIGFGS-PNKANSYSVHG-SALGAKEVDATRKNLGWPY-------EPFHVPEDVKKHWSRHVAEGATLEAE 393 (748)
Q Consensus 323 ~P~vI~~~T~kg~G~-~~~~~~~~~H~-~~~~~~e~~~~~~~~~~~~-------~~~~v~~e~~~~~~~~~~~g~~~~~~ 393 (748)
+|++|.++|+||+|. +..++.+.+|+ .+++.++++++++.++||. .||..|++
T Consensus 385 ~PtvIia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~------------------ 446 (891)
T PRK09405 385 QPTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGE------------------ 446 (891)
T ss_pred CCEEEEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCC------------------
Confidence 999999999999999 66788889998 4899999999999999862 23333321
Q ss_pred HHHHHHHHHhhCHHHHHHH-H--HHhcCCCCCcccc----cCC---CCC-----CCCcchhHHHHHHHHHHHHHHh---C
Q 004509 394 WNAKFAEYEKKYPEEAAEF-K--SISSGQLPAGWEK----ALP---TYT-----PESPAEATRNLSQTCLNALAKT---L 455 (748)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~-~--~~l~~~~p~~~~~----~~p---~~~-----~~~~~~~~r~a~~~~L~~l~~~---~ 455 (748)
..|+. +++ + ..+.|..|+.... .+| .|. .++++++||.||+++|.+|++. .
T Consensus 447 ----------~s~e~-~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~ 515 (891)
T PRK09405 447 ----------DSPEI-KYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIG 515 (891)
T ss_pred ----------CCHHH-HHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccC
Confidence 11111 111 1 1244444433211 122 221 1235789999999999999995 8
Q ss_pred CCEEEEecCCCCCccc--ccc------------------ccccccccCCCCCccccccchHHHHH--HHHHHHhc--CCC
Q 004509 456 PGLLGGSADLASSNMT--LLK------------------MFGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPG 511 (748)
Q Consensus 456 p~vv~~saDl~~s~~~--~~k------------------~~~~f~~~~~p~R~id~GIaE~~~vg--~AaGlA~~--G~~ 511 (748)
++||.+.+|++.++++ .+. .+..|++ +||+|||++||+||+|++ +|+|+|+. |+|
T Consensus 516 ~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke-~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g 594 (891)
T PRK09405 516 KRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKE-SKDGQILQEGINEAGAMASWIAAATSYSTHGEP 594 (891)
T ss_pred CcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHH-cCCCcEEEechhhhHHHHHHHHHHHhhhhcCCC
Confidence 9999999999876654 110 0134544 799999999999999999 99996655 544
Q ss_pred CccEEEeehhH-HHHHHHHHHHh-hccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHH
Q 004509 512 LIPYCATFFVF-TDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 589 (748)
Q Consensus 512 ~~Piv~~f~~F-~~r~~dqIr~~-a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~ 589 (748)
++||+++|+.| .+|++||||+. |+++.+|++++|++|.+++.+|.|||..+|++++|+||||+||.|+|+.|++.+++
T Consensus 595 ~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~ 674 (891)
T PRK09405 595 MIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQ 674 (891)
T ss_pred ceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHH
Confidence 79999999999 67999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc---CCC--cEEEEEcCCCCCCCCCCCccccccce--eEEecCCCC--CCCCEEEEEeChhHHHHHHHHHHHHh-C
Q 004509 590 VAVAN---RKR--PSILALSRQKLPHLAGTSIDGVEKGA--YIISDNSSG--NKPDVILIGTGSELEIAAKAAEELRK-G 659 (748)
Q Consensus 590 ~a~~~---~~~--P~~irl~r~~~~~~~~~~~~~~~~G~--~~v~~~~~~--~g~dvtlva~G~~v~~al~Aa~~L~~-~ 659 (748)
.++++ ..+ |.|||+...+.+.........+.+|+ |++ +++.+ .+.||+|+++|.|+++|++||++|++ +
T Consensus 675 ~~l~rm~~~~~~~~yYlrl~ne~~~~~~~pe~~~~~igKg~y~L-r~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~ 753 (891)
T PRK09405 675 DGLRRMYGEQENVFYYITVMNENYHQPAMPEGAEEGILKGMYKL-ETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDY 753 (891)
T ss_pred HHHHHHhhcCCCeEEEEEeCCCCCCCCCCCcccccccceEEEEe-ccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhh
Confidence 98751 244 77799863333221111112355555 445 44210 12389999999999999999999988 7
Q ss_pred CCcEEEEecCChhhHHHHHHHHhh----------------hhccCCCceEEEEcccccc---CcchhhcCCccEEeeCcC
Q 004509 660 GKAVRVVSFVSWELFDEQSDAYKE----------------SVLPAAVSARVSIEAGSTF---GWEKIVGSKGKAIGIDRF 720 (748)
Q Consensus 660 Gi~v~VId~~~l~pld~~~~~~~~----------------~v~~~~~~~vv~vE~~~~~---G~~~~v~~~~~~ig~d~f 720 (748)
||+++|||++|+||||++.+.... .+++...+.+|++|||... -+..++..++.++|+|+|
T Consensus 754 GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~~gG~~Vtv~D~~~aVae~la~~~p~~~~~LGvD~F 833 (891)
T PRK09405 754 GVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKGAEGPVVAATDYMKLFAEQIRAFVPGDYVVLGTDGF 833 (891)
T ss_pred CCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcccCCcEEEecchHHHHHHHHHHhCCCCEEEEecCCC
Confidence 999999999999999999864211 1111111234677776421 122333456788999999
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 721 GASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 721 ~~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
+.+|++++|+++||||+++|+++++++|
T Consensus 834 G~SGt~~~L~~~fglda~~Iv~aal~~L 861 (891)
T PRK09405 834 GRSDTREALRRFFEVDAEYVVVAALKAL 861 (891)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 20
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=7.9e-80 Score=710.02 Aligned_cols=627 Identities=23% Similarity=0.283 Sum_probs=508.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~------~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~ 155 (748)
+.+.++.+++++.||+++++|+.+++ +||+|+++|++||+.+||+++||.+| .+.+|| +|+|+||++|++
T Consensus 69 pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~---~~~~rD-~VlSKGHasp~l 144 (885)
T TIGR00759 69 PGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHS---EGGGGD-LVFFQGHAAPGI 144 (885)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCC---CCCCCC-EEEECCcHHHHH
Confidence 55778888899999999999999999 99999999999999999999999754 346899 599999999999
Q ss_pred HHHHHHcCCCCCCHHHHhhhhhc--CCCCCCCCCCCCCCc-cccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCc
Q 004509 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETPG-IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (748)
Q Consensus 156 Ya~~~l~G~~~~~~~~l~~~r~~--~s~~~Ghp~~~~~pg-i~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~ 232 (748)
||.+++.||+ +.++|.+||+. ++.++|||++...|+ ++++||+||+|++.|+|+|++.|++..+++ .+..++
T Consensus 145 YA~L~l~G~l--s~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~---~~~~~~ 219 (885)
T TIGR00759 145 YARAFLEGRL--TEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGL---KDTGDQ 219 (885)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhcc---CCCCCc
Confidence 9999999986 99999999995 777889999876664 999999999999999999999998876653 223589
Q ss_pred EEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc--ccccHHHHHhhCCcEEEEEc---------
Q 004509 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVK--------- 301 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~--------- 301 (748)
+|||++||||++||++|||+.+|++++|+|||+|+|+|++++++++... ..+++.++|+++||++++|+
T Consensus 220 rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf 299 (885)
T TIGR00759 220 KVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALL 299 (885)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhh
Confidence 9999999999999999999999999999999999999999999999743 35799999999999999984
Q ss_pred -----------------------------------------------------------cCCCCHHHHHHHHHHHHhcCC
Q 004509 302 -----------------------------------------------------------NGNTGYDDIRAAIKEAKAVTD 322 (748)
Q Consensus 302 -----------------------------------------------------------dG~~D~~~l~~al~~a~~~~~ 322 (748)
||| |+++|++|+++|++..+
T Consensus 300 ~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGH-D~~~I~~A~~~A~~~~g 378 (885)
T TIGR00759 300 ARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGH-DPRKVYAAYAAAQEHKG 378 (885)
T ss_pred cCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCC-CHHHHHHHHHHHHhCCC
Confidence 699 99999999999887456
Q ss_pred CCEEEEEEeeeccCCC-CCCCCccccC-CcCchhhHHHHHHhcCCCCC-------CCCCchhHHHHHHHHHhhhhhhHHH
Q 004509 323 KPTLIRVTTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAE 393 (748)
Q Consensus 323 ~P~vI~~~T~kg~G~~-~~~~~~~~H~-~~~~~~e~~~~~~~~~~~~~-------~~~v~~e~~~~~~~~~~~g~~~~~~ 393 (748)
+|++|+++|+||+|.+ .+++.+.+|+ .+++.++++.++++++||.. ||..|++
T Consensus 379 rPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~------------------ 440 (885)
T TIGR00759 379 QPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGE------------------ 440 (885)
T ss_pred CCEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCC------------------
Confidence 8999999999999998 5678899998 58999999999999998643 3433321
Q ss_pred HHHHHHHHHhhCHHHHHHH---HHHhcCCCCCcccc----cCCCCC--------CCCcchhHHHHHHHHHHHHHHhC---
Q 004509 394 WNAKFAEYEKKYPEEAAEF---KSISSGQLPAGWEK----ALPTYT--------PESPAEATRNLSQTCLNALAKTL--- 455 (748)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~---~~~l~~~~p~~~~~----~~p~~~--------~~~~~~~~r~a~~~~L~~l~~~~--- 455 (748)
..|+. +++ ...+.|.+|+.... .+|... .+.+.++|..||.+.|..|++.-
T Consensus 441 ----------~s~e~-~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g 509 (885)
T TIGR00759 441 ----------GSPEV-RYLLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIG 509 (885)
T ss_pred ----------CCHHH-HHHHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccc
Confidence 11111 111 12456666654332 234221 12356899999999999999742
Q ss_pred CCEEEEecCCCCCccc--ccccccc-----------------ccccCCCCCccccccchHHHHH--HHHHH--HhcCCCC
Q 004509 456 PGLLGGSADLASSNMT--LLKMFGD-----------------FQKDTPEERNVRFGVREHGMGA--ICNGI--ALHSPGL 512 (748)
Q Consensus 456 p~vv~~saDl~~s~~~--~~k~~~~-----------------f~~~~~p~R~id~GIaE~~~vg--~AaGl--A~~G~~~ 512 (748)
++||-+.+|.+.+.+. .+...+. +.++...+|.++.||+|.+.++ +|+|. +.+|.++
T Consensus 510 ~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~m 589 (885)
T TIGR00759 510 KRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPM 589 (885)
T ss_pred cceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCee
Confidence 4589999998765443 1111111 1122446899999999999987 45664 5789889
Q ss_pred ccEEEeehhH-HHHHHHHHHHhhccCCCeEEEEecCCC-ccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 004509 513 IPYCATFFVF-TDYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKV 590 (748)
Q Consensus 513 ~Piv~~f~~F-~~r~~dqIr~~a~~~~pVi~v~t~~g~-~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~ 590 (748)
+||...|+.| .+|..|.+...|++...-.++++.+|. ++...|-+||......+-..+|||.-|.|+.+.|++.+++.
T Consensus 590 iP~yi~YsmFgfqR~gD~~waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~ 669 (885)
T TIGR00759 590 IPFYIYYSMFGFQRIGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMED 669 (885)
T ss_pred eeeeEeeccccccchHHHHHHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHH
Confidence 9999999999 999999999999999999999988888 57777999999888888899999999999999999999999
Q ss_pred HHHc---CCCcEEEEEcC--CCC--CCCCCCCccccccceeEEecCCCCC-CCCEEEEEeChhHHHHHHHHHHHHhC-CC
Q 004509 591 AVAN---RKRPSILALSR--QKL--PHLAGTSIDGVEKGAYIISDNSSGN-KPDVILIGTGSELEIAAKAAEELRKG-GK 661 (748)
Q Consensus 591 a~~~---~~~P~~irl~r--~~~--~~~~~~~~~~~~~G~~~v~~~~~~~-g~dvtlva~G~~v~~al~Aa~~L~~~-Gi 661 (748)
++++ ....+|++++- .++ |..++...+.+..|.|++.+....+ +++|.|+++|..+++|++||++|+++ |+
T Consensus 670 g~~rm~~~~~~v~yylt~~ne~~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV 749 (885)
T TIGR00759 670 GLRRMYGEQEDVFYYVTVMNENYVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGV 749 (885)
T ss_pred HHHHHhhCCCCEEEEEEecCCCCCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCC
Confidence 9875 24578888765 333 2233333456889999998642111 25899999999999999999999875 99
Q ss_pred cEEEEecCChhhHHHHHH--H--------------HhhhhccC-CCceEEEEcccc---ccCcchhhcCCccEEeeCcCC
Q 004509 662 AVRVVSFVSWELFDEQSD--A--------------YKESVLPA-AVSARVSIEAGS---TFGWEKIVGSKGKAIGIDRFG 721 (748)
Q Consensus 662 ~v~VId~~~l~pld~~~~--~--------------~~~~v~~~-~~~~vv~vE~~~---~~G~~~~v~~~~~~ig~d~f~ 721 (748)
.++|++++|++.|.++.. + |.+.++.. ..+ +|++-|+. ...+..++..+...+|.|.|+
T Consensus 750 ~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP-~va~tDy~~~~~~qir~~vp~~~~~LGtDgFG 828 (885)
T TIGR00759 750 ASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAP-VIASTDYVRAFAEQIRPYVPRKYVTLGTDGFG 828 (885)
T ss_pred CCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHHhccCCCC-EEEEccchhhhHHHHhhhcCCCceEecCCCCC
Confidence 999999999999998743 1 22222332 235 58888873 345777887788899999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 722 ASAPAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 722 ~~G~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
.|+++++|+++|++|++.|+.+++++|
T Consensus 829 rSdtr~~lr~~fevDa~~IV~AAL~aL 855 (885)
T TIGR00759 829 RSDTRENLRHFFEVDAKSVVLAALYAL 855 (885)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 21
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=7.1e-77 Score=639.28 Aligned_cols=331 Identities=53% Similarity=0.867 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCC
Q 004509 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (748)
Q Consensus 89 ~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~ 168 (748)
+++|++||.++++|+.++++||+|++||++||+++||.++|++||+||+|++|||||+|+||++|++|+++++.|| +++
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~-~~~ 80 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGY-DLS 80 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTS-SS-
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcC-CCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998 259
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH
Q 004509 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (748)
Q Consensus 169 ~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (748)
.++|.+||+.+|.++|||+...+|||+++||+||||++.|+|+|+|.|+++.+||+|+++..+++|||++||||+|||++
T Consensus 81 ~~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~ 160 (332)
T PF00456_consen 81 EEDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSV 160 (332)
T ss_dssp HHHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHH
T ss_pred HHHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhh
Confidence 99999999999999999998789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004509 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 328 (748)
Q Consensus 249 ~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~ 328 (748)
|||+.+|++++|+|||+|||+|++++++.++....+|+.++|++|||++++|.||| |+++|.+||++|+...++|++|+
T Consensus 161 ~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGh-d~~~i~~A~~~a~~~~~kP~~Ii 239 (332)
T PF00456_consen 161 WEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWNVIEVCDGH-DVEAIYAAIEEAKASKGKPTVII 239 (332)
T ss_dssp HHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-EEEEEEETT-BHHHHHHHHHHHHHSTSS-EEEE
T ss_pred HHHHHHHHHhCCCCEEEEEecCCcccCCCcccccchHHHHHHHHhhhhhcccccCc-HHHHHHHHHHHHHhcCCCCceee
Confidence 99999999999999999999999999999988778999999999999999977999 99999999999988558999999
Q ss_pred EEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHH
Q 004509 329 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 408 (748)
Q Consensus 329 ~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 408 (748)
++|+||+|+++++++.+||+.+++++|+++++++++|+.++|.|++|++++|++..++|...+++|++.+.+|++++|++
T Consensus 240 ~~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~ 319 (332)
T PF00456_consen 240 ARTVKGKGVPFMEGTAKWHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEE 319 (332)
T ss_dssp EEE-TTTTSTTTTTSGGGTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred cceEEecCchhhcccchhhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 004509 409 AAEFKSISSGQLP 421 (748)
Q Consensus 409 ~~~~~~~l~~~~p 421 (748)
+++|++.++|++|
T Consensus 320 a~el~~~l~g~lP 332 (332)
T PF00456_consen 320 AQELERRLNGELP 332 (332)
T ss_dssp HHHHHHHHTT---
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999876
No 22
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=3.4e-65 Score=590.49 Aligned_cols=585 Identities=21% Similarity=0.302 Sum_probs=448.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCC-eEEEeCCCccHHHHHHHHHcC-----CCCCCHHH--Hh-hhh
Q 004509 106 ANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRD-RFVLSAGHGCMLQYALLHLAG-----YDSVQEDD--LK-NFR 176 (748)
Q Consensus 106 a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rD-r~I~s~GH~~~~~Ya~~~l~G-----~~~~~~~~--l~-~~r 176 (748)
.-.||+|++-|..-+++.|-...=++ +.| .+|++.||++|++|+.++|.| |..++.++ |. .||
T Consensus 47 r~~GHwGt~pgln~vyahln~li~~~--------~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfr 118 (785)
T PRK05261 47 RLLGHWGTTPGLNFIYAHLNRLIRKY--------DLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFK 118 (785)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhhc--------CCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHH
Confidence 34999999999887766665443223 234 589999999999999999999 53345555 87 799
Q ss_pred hcCCC--CCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhh---HHHH
Q 004509 177 QWGSK--TPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---ANEA 251 (748)
Q Consensus 177 ~~~s~--~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~---~~Ea 251 (748)
|+++. ++|||+. ++||++.++|+||||++.|+|+|+..+ +.+|+|++||||+++|. .|++
T Consensus 119 qfs~pgg~~sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~~~--------------d~iv~~~vGDGE~EeG~lAa~W~~ 183 (785)
T PRK05261 119 QFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAAFDNP--------------DLIVACVVGDGEAETGPLATSWHS 183 (785)
T ss_pred hccCCCCcCCCCCC-CCCCeeeCCCchhhHHHHHHHHHHcCC--------------CCEEEEEECcCchhhhhhHHHhhh
Confidence 99877 8899995 899999999999999999999997543 67999999999999998 5999
Q ss_pred HHHHHHcCCCcEEEEEECCCCccccccccc--ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHH-------------
Q 004509 252 SSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKE------------- 316 (748)
Q Consensus 252 l~~A~~~~L~~li~Ivd~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~------------- 316 (748)
.+++...++++++.|+++|+|+|++++... ..+++.++|++|||+++.| ||| |++++.+++++
T Consensus 184 ~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~V-DG~-D~~av~~a~a~al~~~i~~i~~iq 261 (785)
T PRK05261 184 NKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFV-EGD-DPADMHQEMAAALDTAIEEIRAIQ 261 (785)
T ss_pred hhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEE-CCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999854 3479999999999999998 999 99998888443
Q ss_pred --HHhcC---CCCE--EEEEEeeeccCCCC------CCCCccccCCcCchh-hHHHHHHhc-CC--CCCC---CCCchhH
Q 004509 317 --AKAVT---DKPT--LIRVTTTIGFGSPN------KANSYSVHGSALGAK-EVDATRKNL-GW--PYEP---FHVPEDV 376 (748)
Q Consensus 317 --a~~~~---~~P~--vI~~~T~kg~G~~~------~~~~~~~H~~~~~~~-e~~~~~~~~-~~--~~~~---~~v~~e~ 376 (748)
|+. . .+|+ +|+++|.||+|.+. .+++.+.|+.|++.+ +..+.++.| +| .+.| |.++.++
T Consensus 262 ~~Ar~-~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l 340 (785)
T PRK05261 262 KEARE-GGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDEDGRL 340 (785)
T ss_pred HHHHh-CCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCCCch
Confidence 332 3 5899 99999999999774 467789999999775 666777777 67 5666 8888888
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCccc-ccCCCC--------CCC-CcchhHHHHHHH
Q 004509 377 KKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWE-KALPTY--------TPE-SPAEATRNLSQT 446 (748)
Q Consensus 377 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~~~-~~~p~~--------~~~-~~~~~~r~a~~~ 446 (748)
++.++..+.+|. .++. .+|. .++.. .+. ..+|+| .++ ....+||. +++
T Consensus 341 ~~~~~~l~p~g~-------~r~~----~~P~--------ang~~--~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~ 398 (785)
T PRK05261 341 KPELAALAPKGD-------RRMG----ANPH--------ANGGL--LLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGK 398 (785)
T ss_pred hHHHHHhccCch-------hhhc----CCch--------hcCCc--CccccCCCchHhhcccccCCCccccccHHH-HHH
Confidence 877776555443 1111 1221 11110 000 112333 122 23568888 999
Q ss_pred HHHHHHHhCCC-EEEEecCCCCCcccc--cccc-cccc--------ccCCCCCccccccchHHHHHHHHHHHhcCCCCcc
Q 004509 447 CLNALAKTLPG-LLGGSADLASSNMTL--LKMF-GDFQ--------KDTPEERNVRFGVREHGMGAICNGIALHSPGLIP 514 (748)
Q Consensus 447 ~L~~l~~~~p~-vv~~saDl~~s~~~~--~k~~-~~f~--------~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~P 514 (748)
.|+++++.+|+ ++++++|+..||.+. +..+ ..+. ...+.+|+|+ ||+|+.|.|++.|+++.| .++
T Consensus 399 ~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG--~~~ 475 (785)
T PRK05261 399 YLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTG--RHG 475 (785)
T ss_pred HHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcC--CCc
Confidence 99999999999 999999999888752 1100 0011 1124489999 999999999999999988 599
Q ss_pred EEEeehhHH---HHHHHHH----HHhh-------ccCCCeEEEEecCCCccCCCCCCCCC---hhhhHHHhcCCCcEEEe
Q 004509 515 YCATFFVFT---DYMRAAI----RISA-------LCEAGVIYVMTHDSIGLGEDGPTHQP---IEHLASFRAMPNILMLR 577 (748)
Q Consensus 515 iv~~f~~F~---~r~~dqI----r~~a-------~~~~pVi~v~t~~g~~~g~dG~THq~---~edia~lr~iPnl~V~~ 577 (748)
++.+|..|+ ++|++|+ |... +.. +.++.|++.+..|+||+|||+ ++.++.+|. |+++||.
T Consensus 476 ~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~s--Ln~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~r 552 (785)
T PRK05261 476 FFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPS--LNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYL 552 (785)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc--eeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEe
Confidence 999999999 8999997 6431 223 338889999999999999999 999999999 9999999
Q ss_pred eCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccceeEEecCC--CCCCCCEEEEEeChhHHH-HHHH
Q 004509 578 PADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNS--SGNKPDVILIGTGSELEI-AAKA 652 (748)
Q Consensus 578 Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~--~~~g~dvtlva~G~~v~~-al~A 652 (748)
|+|++|+..+++.|+++.++|++|.++|+++|+....+ ...+..|.|++...+ .++.+||+|+++|+++.. |++|
T Consensus 553 PaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaA 632 (785)
T PRK05261 553 PPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAA 632 (785)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHH
Confidence 99999999999999998899999999999999875432 356889999987321 112479999999999988 9999
Q ss_pred HHHHHhC--CCcEEEEecCChhhHHHHHHHH---------hhhhccCCCceEEEEccccc--cC--cchhhcCCccEEee
Q 004509 653 AEELRKG--GKAVRVVSFVSWELFDEQSDAY---------KESVLPAAVSARVSIEAGST--FG--WEKIVGSKGKAIGI 717 (748)
Q Consensus 653 a~~L~~~--Gi~v~VId~~~l~pld~~~~~~---------~~~v~~~~~~~vv~vE~~~~--~G--~~~~v~~~~~~ig~ 717 (748)
+++|+++ ||+++||+| +++|+.+...| .+.++.+.+++|+...-+.. .+ +.+--..++...|.
T Consensus 633 a~~L~~~~pgikvRVVSv--~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~hgyp~~i~~l~~~r~~~~~~~v~gy 710 (785)
T PRK05261 633 ADLLREHFPDLKIRVVNV--VDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFHGYPWLIHRLTYRRTNHHNFHVRGY 710 (785)
T ss_pred HHHHHhhCCCCCEEEEEe--chhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEeCCCHHHHHHHhccCCCCCccEEEEE
Confidence 9999999 999999999 47887764221 23455455554333222110 01 01100123345666
Q ss_pred CcCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 004509 718 DRFGASAPAGKIYKEFGITAEAVITAAKE 746 (748)
Q Consensus 718 d~f~~~G~~~~l~~~~gl~~e~I~~~i~~ 746 (748)
.+=+..-++-+++-..++|.-+++..+.+
T Consensus 711 ~e~g~tttp~dm~~~N~~~r~~l~~~a~~ 739 (785)
T PRK05261 711 KEEGTTTTPFDMVVLNELDRFHLAIDAID 739 (785)
T ss_pred ecCCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 55555667889999999999999887764
No 23
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-67 Score=530.81 Aligned_cols=295 Identities=29% Similarity=0.409 Sum_probs=271.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEE
Q 004509 437 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC 516 (748)
Q Consensus 437 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv 516 (748)
..++|++|++.|.++++.++++|++.+|+.+|+.+ ..|.+ +||+||||+||+||+|+|+|+|||+.|+ +||+
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~-----~~f~~-~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk--~Pfv 77 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT-----GYFAK-EFPDRFFNVGIAEQDMVGTAAGLALAGK--KPFV 77 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccch-----hHHHH-hCchhheecchHHHHHHHHHHHHHhcCC--Ccee
Confidence 46899999999999999999999999999988864 56876 8999999999999999999999999995 9999
Q ss_pred EeehhHHH-HHHHHHHHh-hccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc
Q 004509 517 ATFFVFTD-YMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 594 (748)
Q Consensus 517 ~~f~~F~~-r~~dqIr~~-a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~ 594 (748)
++|+.|+. |+|||||+. ||+++||+++++|+|+++|+||+|||++||+++||.+|||+|+.|||+.+++.+++++.+
T Consensus 78 ~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~- 156 (312)
T COG3958 78 STFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD- 156 (312)
T ss_pred echHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-
Confidence 99999999 999999997 999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCcEEEEEcCCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhH
Q 004509 595 RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 674 (748)
Q Consensus 595 ~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pl 674 (748)
.++|+|+|+.|.+.|.+..+..+.|++|++.++++ |+|+|||++|.||++|++||+.|+++||+++||||.|+||+
T Consensus 157 ~~GP~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrd----G~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPi 232 (312)
T COG3958 157 YKGPVYMRLGRGKVPVVVDEGGYTFEIGKANVLRD----GSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPI 232 (312)
T ss_pred cCCCEEEEecCCCCCceecCCCceEeccceeEeec----CCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCC
Confidence 79999999999999887766567899999999997 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCCceEEEEccccccC-cchhh--------cCCccEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHH
Q 004509 675 DEQSDAYKESVLPAAVSARVSIEAGSTFG-WEKIV--------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAA 744 (748)
Q Consensus 675 d~~~~~~~~~v~~~~~~~vv~vE~~~~~G-~~~~v--------~~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I~~~i 744 (748)
|++.+. +...+++ .|||+|+|+..| +|+.+ ..+++++|+ |.|+.+|+.++|+++||||+++|++++
T Consensus 233 D~~~i~--~~A~~t~--~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v 308 (312)
T COG3958 233 DEQAIL--KAARETG--RIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARV 308 (312)
T ss_pred CHHHHH--HHHhhcC--cEEEEecceeecchhHHHHHHHHhcCCcceEEecCCchhccccchHHHHHHhCCCHHHHHHHH
Confidence 999875 2333453 479999999864 55543 146789999 899999999999999999999999999
Q ss_pred HHhC
Q 004509 745 KEVC 748 (748)
Q Consensus 745 ~~ll 748 (748)
++++
T Consensus 309 ~~~~ 312 (312)
T COG3958 309 LELL 312 (312)
T ss_pred HhhC
Confidence 9875
No 24
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-62 Score=481.57 Aligned_cols=236 Identities=41% Similarity=0.662 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCC
Q 004509 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (748)
Q Consensus 85 ~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~ 164 (748)
..-|.++|.+||+.+++|+..++.||+|++||++||+++||+..|+++|+||.|++|||||+||||++|++||+++..||
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~G~ 86 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEKGY 86 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHcCC
Confidence 33599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcc
Q 004509 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (748)
Q Consensus 165 ~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (748)
| +.++|.+|++.+|+++|||+...+||++++||+||||||+|+|||++.|+.+ .+.+|||++||||++
T Consensus 87 ~--p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~----------~~~~VyvilGDGEl~ 154 (243)
T COG3959 87 F--PEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKG----------SPYRVYVILGDGELD 154 (243)
T ss_pred C--CHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcC----------CCceEEEEecCcccc
Confidence 7 9999999999999999999998899999999999999999999999999886 378999999999999
Q ss_pred hhhHHHHHHHHHHcCCCcEEEEEECCCCccccccc-ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCC
Q 004509 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 323 (748)
Q Consensus 245 eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~ 323 (748)
||++|||+++|++++|+|||.|+|.|+.|+++.+. +...+++.++|+||||++++| ||| |+++|.+|+++++...++
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~ev-dG~-d~~~i~~a~~~~~~~~~r 232 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEV-DGH-DIEEIVEALEKAKGSKGR 232 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEE-cCc-CHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999995 567889999999999999999 999 999999999999874559
Q ss_pred CEEEEEEeeec
Q 004509 324 PTLIRVTTTIG 334 (748)
Q Consensus 324 P~vI~~~T~kg 334 (748)
|++|+++|+||
T Consensus 233 P~~IIa~Tvkg 243 (243)
T COG3959 233 PTVIIAKTVKG 243 (243)
T ss_pred CeEEEEecccC
Confidence 99999999986
No 25
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=1e-57 Score=502.45 Aligned_cols=635 Identities=23% Similarity=0.273 Sum_probs=490.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~------~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~ 155 (748)
+-+.++=.++-.-||+.++.|+-+++ +||++|.-|++.|+.++|.+|+| +++.+. +.|+ |+-+||.+|++
T Consensus 72 pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr--~~~~~~-ggDl-V~~qgHaSPg~ 147 (887)
T COG2609 72 PGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEKD-GGDL-VFFQGHASPGI 147 (887)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhc--CcCCCC-CCce-EEEecCCCchH
Confidence 34444334456669999999998876 99999999999999999999987 444333 5674 78899999999
Q ss_pred HHHHHHcCCCCCCHHHHhhhhhcCC--CCCCCCCCCCC-CccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCc
Q 004509 156 YALLHLAGYDSVQEDDLKNFRQWGS--KTPGHPENFET-PGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (748)
Q Consensus 156 Ya~~~l~G~~~~~~~~l~~~r~~~s--~~~Ghp~~~~~-pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~ 232 (748)
||..+|.|++ +.++|++||+..+ -++++|.++.. ....|+|++||-|...|+=.|.-+|++..|.- .+..+.
T Consensus 148 yArafLeGRl--seeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl---~~~~~~ 222 (887)
T COG2609 148 YARAFLEGRL--TEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGL---KDTSDQ 222 (887)
T ss_pred HHHHHHhccc--cHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCC---cCCCCC
Confidence 9999999985 9999999998765 23356776554 47889999999999999999999999876531 123689
Q ss_pred EEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc--ccccHHHHHhhCCcEEEEEc---------
Q 004509 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVK--------- 301 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~--------- 301 (748)
+||||+||||+.|+...+|+..|++++|+|+|||+|.|.+++|+++... ....+...|++.||+|+.|+
T Consensus 223 ~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll 302 (887)
T COG2609 223 KVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELL 302 (887)
T ss_pred eEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHh
Confidence 9999999999999999999999999999999999999999999998643 45678889999999999998
Q ss_pred -----------------------------------------------------------cCCCCHHHHHHHHHHHHhcCC
Q 004509 302 -----------------------------------------------------------NGNTGYDDIRAAIKEAKAVTD 322 (748)
Q Consensus 302 -----------------------------------------------------------dG~~D~~~l~~al~~a~~~~~ 322 (748)
.|| |+..|++|+++|.+..+
T Consensus 303 ~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGH-D~~ki~aA~~~A~~~kg 381 (887)
T COG2609 303 AKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGH-DPEKVYAAFKKAQEHKG 381 (887)
T ss_pred cccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCC-CHHHHHHHHHHHhcCCC
Confidence 288 99999999999998556
Q ss_pred CCEEEEEEeeeccCCCCC-CCCccccCC-cCchhhHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 004509 323 KPTLIRVTTTIGFGSPNK-ANSYSVHGS-ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAE 400 (748)
Q Consensus 323 ~P~vI~~~T~kg~G~~~~-~~~~~~H~~-~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~g~~~~~~~~~~~~~ 400 (748)
+||||.++|+||+|.+.. +..+..|.. .++.+.++.+++++++|... +++ +.... ...|.
T Consensus 382 ~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd----~e~-e~lpy-~~~g~------------ 443 (887)
T COG2609 382 RPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSD----AEL-EELPY-YHFGE------------ 443 (887)
T ss_pred CceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCch----hhh-hcCCc-CCCCC------------
Confidence 999999999999999743 556777876 78999999999999886211 111 00000 00000
Q ss_pred HHhhCHHHHHH--HHHHhcCCCCCcccc-----cCCCC-------CCCCcchhHHHHHHHHHHHHHHhC---CCEEEEec
Q 004509 401 YEKKYPEEAAE--FKSISSGQLPAGWEK-----ALPTY-------TPESPAEATRNLSQTCLNALAKTL---PGLLGGSA 463 (748)
Q Consensus 401 ~~~~~p~~~~~--~~~~l~~~~p~~~~~-----~~p~~-------~~~~~~~~~r~a~~~~L~~l~~~~---p~vv~~sa 463 (748)
..||.... ....+.|-+|..... .+|.. ....+.++|..||.+.|+.+++.. ++||-+.+
T Consensus 444 ---~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiip 520 (887)
T COG2609 444 ---DSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIP 520 (887)
T ss_pred ---CcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccC
Confidence 01111111 112344555654332 13321 112236899999999999999833 55899999
Q ss_pred CCCCCccc--ccccc-------ccc----------cccCCCCCccccccchHHHHH--HHHHH--HhcCCCCccEEEeeh
Q 004509 464 DLASSNMT--LLKMF-------GDF----------QKDTPEERNVRFGVREHGMGA--ICNGI--ALHSPGLIPYCATFF 520 (748)
Q Consensus 464 Dl~~s~~~--~~k~~-------~~f----------~~~~~p~R~id~GIaE~~~vg--~AaGl--A~~G~~~~Piv~~f~ 520 (748)
|.+.+.+. .+.-. +.| .++.-.+++++.||+|.+.++ +|+|. +.+|.+++||..-|+
T Consensus 521 DearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~Ys 600 (887)
T COG2609 521 DEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYS 600 (887)
T ss_pred chhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeec
Confidence 98755432 11100 111 122346899999999999887 46665 578888999999999
Q ss_pred hH-HHHHHHHHHHhhccCCC-eEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcC---
Q 004509 521 VF-TDYMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR--- 595 (748)
Q Consensus 521 ~F-~~r~~dqIr~~a~~~~p-Vi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~--- 595 (748)
.| ++|..|.+...|.|... .++.+|.+|.++...|-.|+.....-+-.++|||.-|.|+.++|++.+|+.++++.
T Consensus 601 mFgfqRigD~~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~ 680 (887)
T COG2609 601 MFGFQRIGDLLWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGE 680 (887)
T ss_pred hhhhhhHHHHHHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhcc
Confidence 99 89999999888988776 99999999999777799999877666677999999999999999999999999753
Q ss_pred ---CCcEEEEEcCCCCCC--CCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHh-CCCcEEEEecC
Q 004509 596 ---KRPSILALSRQKLPH--LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVSFV 669 (748)
Q Consensus 596 ---~~P~~irl~r~~~~~--~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~-~Gi~v~VId~~ 669 (748)
+.-.||++...+.++ .+....+.+.+|.|.+...+..++..+.|+++|....+|++|++.|++ .|+.+.|++++
T Consensus 681 ~qe~v~yYlt~~ne~~~qPamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svt 760 (887)
T COG2609 681 GQENVFYYITLSNENYPQPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVT 760 (887)
T ss_pred CcCCcEEEEEeccCcCCCCCCCCcchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecc
Confidence 334788887776644 333334678899999876531125789999999999999999999987 89999999999
Q ss_pred ChhhHHHHH----------------HHHhhhhccCCCceEEEEccccccC---cchhhcCCccEEeeCcCCCCCCHHHHH
Q 004509 670 SWELFDEQS----------------DAYKESVLPAAVSARVSIEAGSTFG---WEKIVGSKGKAIGIDRFGASAPAGKIY 730 (748)
Q Consensus 670 ~l~pld~~~----------------~~~~~~v~~~~~~~vv~vE~~~~~G---~~~~v~~~~~~ig~d~f~~~G~~~~l~ 730 (748)
|.+.|.++. +.|...+++...+ +|++-|+.... +..++..+...+|.|.||.|+++++|+
T Consensus 761 S~~eL~rdg~a~~R~n~lhP~~~~~v~yv~~~L~~~~p-~Va~tDy~~~~a~qir~~vp~~y~vLGtdgFGrSdsr~~Lr 839 (887)
T COG2609 761 SFDELARDGQAAERWNLLHPTETPRVPYVAQVLNADGP-VVAVTDYMKLFAEQIRAVVPQRYRVLGTDGFGRSDSRENLR 839 (887)
T ss_pred cHHHHhcchHHHHHHHhcCCCCCCCchHHHHHhccCCC-eEEechhhHhHHHHHhcccCCeeEEeccCCCCccCcHHHHH
Confidence 999887653 3466667775556 48887776532 355666566789999999999999999
Q ss_pred HHhCCCHHHHHHHHHHhC
Q 004509 731 KEFGITAEAVITAAKEVC 748 (748)
Q Consensus 731 ~~~gl~~e~I~~~i~~ll 748 (748)
++|.+|+..|+.++...|
T Consensus 840 ~~fevDa~~vv~Aal~~L 857 (887)
T COG2609 840 RFFEVDAYYVVVAALSAL 857 (887)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 999999999999887653
No 26
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=9.4e-58 Score=491.06 Aligned_cols=271 Identities=28% Similarity=0.319 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHH
Q 004509 86 ALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALL 159 (748)
Q Consensus 86 ~~l~~la~~iR~~~~~~~~~a~~------GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~ 159 (748)
|+-.++.+.||+++++|+.++++ ||+|++||++||+++||+.+|++|| +|++||| |+|+||++|++|+++
T Consensus 2 ~i~~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p---~~~~RDR-vlSkGHas~~lYA~L 77 (386)
T cd02017 2 EIERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARG---EGGGGDL-VYFQGHASPGIYARA 77 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCC---CCCCCCE-EEeCCcccHHHHHHH
Confidence 45577899999999999999997 9999999999999999999999887 5999999 899999999999999
Q ss_pred HHcCCCCCCHHHHhhhhhcCC--CCCCCCCCCCCCc-cccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEE
Q 004509 160 HLAGYDSVQEDDLKNFRQWGS--KTPGHPENFETPG-IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYV 236 (748)
Q Consensus 160 ~l~G~~~~~~~~l~~~r~~~s--~~~Ghp~~~~~pg-i~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~ 236 (748)
+++||+ +.++|.+||+.+| .++|||++...|+ ++++||+||||++.|+|+|+|.|+..++|++.+ .+++|||
T Consensus 78 ~l~G~~--~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~---~~~rvyv 152 (386)
T cd02017 78 FLEGRL--TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDT---SDQKVWA 152 (386)
T ss_pred HHcCCC--CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCC---CCCeEEE
Confidence 999986 9999999999999 5889998766664 999999999999999999999999877775432 4789999
Q ss_pred EEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc--cccccHHHHHhhCCcEEEEEcc------------
Q 004509 237 ILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVKN------------ 302 (748)
Q Consensus 237 iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~d------------ 302 (748)
++||||++||++|||+++|++++|+|||+|||+|++|++++++. ...+++.++|++|||++++| |
T Consensus 153 llGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V-~~g~~~~~~f~~~ 231 (386)
T cd02017 153 FLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKV-IWGSKWDELLAKD 231 (386)
T ss_pred EEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEE-ecCCcchhhhccC
Confidence 99999999999999999999999999999999999999999986 57899999999999999998 7
Q ss_pred ---------------------------------------------------------CCCCHHHHHHHHHHHHhcCCCCE
Q 004509 303 ---------------------------------------------------------GNTGYDDIRAAIKEAKAVTDKPT 325 (748)
Q Consensus 303 ---------------------------------------------------------G~~D~~~l~~al~~a~~~~~~P~ 325 (748)
|| |+++|.+||.+++...+||+
T Consensus 232 gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGh-D~~~i~~A~~~a~~~~~kPt 310 (386)
T cd02017 232 GGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGH-DPRKVYAAYKKAVEHKGKPT 310 (386)
T ss_pred cchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCC-CHHHHHHHHHHHHhCCCCCe
Confidence 99 99999999999986457999
Q ss_pred EEEEEeeeccCCC-CCCCCccccC-CcCchhhHHHHHHhcCCCC
Q 004509 326 LIRVTTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPY 367 (748)
Q Consensus 326 vI~~~T~kg~G~~-~~~~~~~~H~-~~~~~~e~~~~~~~~~~~~ 367 (748)
+|+++|+||+|.+ ++++.+.||+ .+++++|+++++++++|+.
T Consensus 311 ~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg~~~ 354 (386)
T cd02017 311 VILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIPV 354 (386)
T ss_pred EEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHHcCCCC
Confidence 9999999999999 4788889997 8889999999999999854
No 27
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=3.7e-53 Score=444.63 Aligned_cols=252 Identities=53% Similarity=0.824 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCCHHHH
Q 004509 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL 172 (748)
Q Consensus 93 ~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l 172 (748)
++||+++++|+.++++||+|+++|++|++++||+.+|++||+||+|++|||||+|+||++|++|+++++.|++ +.++|
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~--~~~~l 78 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYL--PEEDL 78 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCC--CHHHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred hhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHH
Q 004509 173 KNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252 (748)
Q Consensus 173 ~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal 252 (748)
.+||+.++.++|||++..+||+++++|+||+|+|.|+|+|+|.++.+ .+++|||++|||+++||++||++
T Consensus 79 ~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~----------~~~~v~~i~GDG~~~~G~~~eal 148 (255)
T cd02012 79 KTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLG----------FDYRVYVLLGDGELQEGSVWEAA 148 (255)
T ss_pred HHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhC----------CCCEEEEEECcccccccHHHHHH
Confidence 99999999999999987788999999999999999999999998764 37899999999999999999999
Q ss_pred HHHHHcCCCcEEEEEECCCCccccccc-ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 253 SLAGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 253 ~~A~~~~L~~li~Ivd~N~~~i~~~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
++|++++|+|+++|+|||+|++++++. ....+++.+++++|||+++.| ||| |++++.++++++++..++|++|+++|
T Consensus 149 ~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v-~G~-d~~~l~~al~~a~~~~~~P~~I~~~t 226 (255)
T cd02012 149 SFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEV-DGH-DVEEILAALEEAKKSKGKPTLIIAKT 226 (255)
T ss_pred HHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEE-CCC-CHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999999999999999999999998874 345678999999999999998 999 99999999999987338999999999
Q ss_pred eeccCCCCCCCCccccCCcCchhhHHH
Q 004509 332 TIGFGSPNKANSYSVHGSALGAKEVDA 358 (748)
Q Consensus 332 ~kg~G~~~~~~~~~~H~~~~~~~e~~~ 358 (748)
+||+|++++++..+||+.+++++++++
T Consensus 227 ~kg~g~~~~e~~~~~H~~~~~~~~~~~ 253 (255)
T cd02012 227 IKGKGVPFMENTAKWHGKPLGEEEVEL 253 (255)
T ss_pred ecccccCccCCCccccCCCCCHHHHHh
Confidence 999999999889999999888877664
No 28
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=5.4e-52 Score=448.29 Aligned_cols=289 Identities=13% Similarity=0.119 Sum_probs=240.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCC-CccccccchHHHHHHHHHHHhcCCCCccEE
Q 004509 438 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYC 516 (748)
Q Consensus 438 ~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~-R~id~GIaE~~~vg~AaGlA~~G~~~~Piv 516 (748)
.++|++++++|.+++++||+++++++|++.+++. +..+++|++ +||+ ||||+||+||+|||+|+|||+.| ++||+
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~-~~~~~~f~~-~fp~~R~~n~gIaEq~~vg~AaGlA~~G--~~pvv 79 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGS-YKVTKGLHE-KYGDLRVLDTPIAENSFTGMAIGAAMTG--LRPIV 79 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCc-hhHHHHHHH-HCCCccEeeccccHHHHHHHHHHHHHCC--CEEEE
Confidence 5899999999999999999999999999754331 223467876 8999 99999999999999999999999 59999
Q ss_pred Ee-ehhHHHHHHHHHHHh-hcc--------CCCeEEEEecCCCccCCCCCCC-CChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004509 517 AT-FFVFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETA 585 (748)
Q Consensus 517 ~~-f~~F~~r~~dqIr~~-a~~--------~~pVi~v~t~~g~~~g~dG~TH-q~~edia~lr~iPnl~V~~Psd~~e~~ 585 (748)
++ |..|++|+||||++. |++ ++||+++. .|.+.+.+|+|| |++| ++||+||||+|++|+|+.|++
T Consensus 80 ~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~--~g~~~~~~G~tHs~~~e--a~~~~iPgl~V~~Psd~~d~~ 155 (327)
T CHL00144 80 EGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRG--PGGVGRQLGAEHSQRLE--SYFQSVPGLQIVACSTPYNAK 155 (327)
T ss_pred EeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEe--cCCCCCCCCccccccHH--HHHhcCCCCEEEEeCCHHHHH
Confidence 85 667889999999886 776 56776664 666566799999 6664 999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEE----EcCCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCC
Q 004509 586 GAYKVAVANRKRPSILA----LSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGK 661 (748)
Q Consensus 586 ~~l~~a~~~~~~P~~ir----l~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi 661 (748)
++++++++ .++|+||| +.|.. +.++++ .+.+++|++.++++ |+|+|||+||+|+++|++|++.|+++||
T Consensus 156 ~~l~~a~~-~~~Pv~ire~~~l~~~~-~~v~~~-~~~~~~Gk~~v~~~----G~ditiia~G~~v~~al~Aa~~L~~~Gi 228 (327)
T CHL00144 156 GLLKSAIR-SNNPVIFFEHVLLYNLK-EEIPDN-EYLLPLEKAEVVRP----GNDITILTYSRMRHHVLQAVKVLVEKGY 228 (327)
T ss_pred HHHHHHHh-CCCcEEEEEcHHhcCCC-CCCCCC-CccccCCeeEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhcCC
Confidence 99999996 68999999 44432 334333 34688999999987 7999999999999999999999999999
Q ss_pred cEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcccccc-Ccchhh------------cCCccEEee-CcCCC-CCCH
Q 004509 662 AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-DRFGA-SAPA 726 (748)
Q Consensus 662 ~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~-G~~~~v------------~~~~~~ig~-d~f~~-~G~~ 726 (748)
+++|||++|++|||.+++. +++.++++ +||+|||... |+++.+ ..++.++|+ |.|++ +|+.
T Consensus 229 ~~~VId~~~ikPlD~~~i~--~~~~~t~~--vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~ 304 (327)
T CHL00144 229 DPEIIDLISLKPLDLGTIS--KSVKKTHK--VLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPL 304 (327)
T ss_pred CEEEEecCcCCCCCHHHHH--HHHHhhCc--EEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccH
Confidence 9999999999999999874 56666653 6999999874 565432 246788999 78887 5666
Q ss_pred HHHHHHhCCCHHHHHHHHHHhC
Q 004509 727 GKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 727 ~~l~~~~gl~~e~I~~~i~~ll 748 (748)
+++ +|||+++|+++|++++
T Consensus 305 ~~~---~gl~~~~I~~~i~~~l 323 (327)
T CHL00144 305 EEA---TVIQPAQIIEAVEQII 323 (327)
T ss_pred HHH---hCCCHHHHHHHHHHHH
Confidence 554 5999999999999874
No 29
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2.9e-51 Score=458.48 Aligned_cols=290 Identities=19% Similarity=0.227 Sum_probs=248.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCccE
Q 004509 437 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 515 (748)
Q Consensus 437 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~Pi 515 (748)
..++|++++++|.+++++||+++++++|++.+++. ++.+..|.+ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga-~~~t~~l~~-~fgp~R~id~gIaEq~~vg~AaGlA~~G--~rPi 216 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGA-YKVTQGLLQ-EFGARRVIDTPITEHGFAGIGVGAAFAG--LKPI 216 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCc-cccchHHHH-HhCccceeecCccHHHHHHHHHHHHhCC--CEEE
Confidence 46899999999999999999999999999766543 223456765 78 9999999999999999999999999 6999
Q ss_pred EEee-hhHHHHHHHHHHHh-h--------ccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004509 516 CATF-FVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 585 (748)
Q Consensus 516 v~~f-~~F~~r~~dqIr~~-a--------~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~ 585 (748)
+++| ..|++|++|||+++ | ++++||+|++.+++.+ + .|+ ||+++|+++||+||||+|++|+|+.|++
T Consensus 217 v~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~-~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~ 293 (464)
T PRK11892 217 VEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAA-R-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAK 293 (464)
T ss_pred EEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCC-C-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHH
Confidence 9875 67889999999875 7 8999999999765553 3 677 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEE-----EEcCC-CCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC
Q 004509 586 GAYKVAVANRKRPSIL-----ALSRQ-KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG 659 (748)
Q Consensus 586 ~~l~~a~~~~~~P~~i-----rl~r~-~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~ 659 (748)
++|+++++ .++|+|| |++|. .+|.+ ..+.+++|+++++++ |+|+|||++|+|++.|++|++.|+++
T Consensus 294 ~ll~~ai~-~~~Pv~ile~~~ry~~~~~vp~~---~~~~~~~Gka~v~r~----G~DvtIva~G~~v~~Al~Aa~~L~~~ 365 (464)
T PRK11892 294 GLLKAAIR-DPNPVIFLENEILYGQSFDVPKL---DDFVLPIGKARIHRE----GKDVTIVSFSIGMTYALKAAEELAKE 365 (464)
T ss_pred HHHHHHhh-CCCcEEEEechhhcCCCCCCCCc---CCccccCceEEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhc
Confidence 99999996 5899999 67775 34433 124578999999987 79999999999999999999999999
Q ss_pred CCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcccccc-Ccchhh------------cCCccEEee-CcCCCCCC
Q 004509 660 GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-DRFGASAP 725 (748)
Q Consensus 660 Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~-G~~~~v------------~~~~~~ig~-d~f~~~G~ 725 (748)
||+++|||++|++|||.+++. +++.++++ +||+|||... |+++.+ ..++.++|+ |.|.+
T Consensus 366 GI~~~VIdl~tlkPlD~~~i~--~sv~kt~~--vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~--- 438 (464)
T PRK11892 366 GIDAEVIDLRTIRPMDTETIV--ESVKKTNR--LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP--- 438 (464)
T ss_pred CCCEEEEECCCCCcCCHHHHH--HHHHhcCe--EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---
Confidence 999999999999999999774 67766663 6999999875 565432 346778999 67764
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHhC
Q 004509 726 AGKIYKEFGI-TAEAVITAAKEVC 748 (748)
Q Consensus 726 ~~~l~~~~gl-~~e~I~~~i~~ll 748 (748)
++.++++++| ++++|++++++++
T Consensus 439 ~~~~le~~~l~~~~~Iv~av~~~~ 462 (464)
T PRK11892 439 YAANLEKLALPSVAEVVEAVKAVC 462 (464)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHh
Confidence 7889999998 9999999999864
No 30
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=6.5e-51 Score=443.91 Aligned_cols=302 Identities=20% Similarity=0.244 Sum_probs=245.1
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhc
Q 004509 429 PTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 508 (748)
Q Consensus 429 p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~ 508 (748)
|.|..+..+.++|++++++|.+++++||+++++++|++.+++. +..+..|.++.+|+||||+|||||+|||+|+|||+.
T Consensus 18 ~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~-~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~ 96 (356)
T PLN02683 18 RGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGA-YKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYA 96 (356)
T ss_pred cccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCc-cchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHC
Confidence 3444455668999999999999999999999999999765542 222334545334999999999999999999999999
Q ss_pred CCCCccEEEee-hhHHHHHHHHHHHh-hccC--------CCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEee
Q 004509 509 SPGLIPYCATF-FVFTDYMRAAIRIS-ALCE--------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRP 578 (748)
Q Consensus 509 G~~~~Piv~~f-~~F~~r~~dqIr~~-a~~~--------~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P 578 (748)
| ++||+++| ++|++|+||||++. |+++ +||+|++.+ |.++| +|+|||..+ +++||+||||+|++|
T Consensus 97 G--~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~P 171 (356)
T PLN02683 97 G--LKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-VGAQHSQCF-AAWYSSVPGLKVLAP 171 (356)
T ss_pred C--CEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-CCCccccCH-HHHHhcCCCCEEEEe
Confidence 9 59999884 77889999999876 8877 999999865 66677 599998777 799999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEc----CCCCCCCCC--CCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHH
Q 004509 579 ADGNETAGAYKVAVANRKRPSILALS----RQKLPHLAG--TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKA 652 (748)
Q Consensus 579 sd~~e~~~~l~~a~~~~~~P~~irl~----r~~~~~~~~--~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~A 652 (748)
+|+.|++.+++++++ .++|+|||++ +...|.... ...+.+++|+++++++ |+|++||++|+|+++|++|
T Consensus 172 ad~~e~~~~l~~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~----G~dvtIia~G~~v~~Al~A 246 (356)
T PLN02683 172 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIERE----GKDVTIVAFSKMVGYALKA 246 (356)
T ss_pred CCHHHHHHHHHHHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEc----CCCEEEEEccHHHHHHHHH
Confidence 999999999999996 5899999963 322222111 1124578899999987 7899999999999999999
Q ss_pred HHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcccccc-Ccchhh------------cCCccEEee-C
Q 004509 653 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-D 718 (748)
Q Consensus 653 a~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~-G~~~~v------------~~~~~~ig~-d 718 (748)
++.|+++||+++|||++|++|||.+++. +++.+++ .|||+|||... |+++.+ ..++.++|+ |
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~--~~~~~t~--~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d 322 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTIN--ASVRKTN--RLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGAD 322 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHH--HHHhhcC--eEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCC
Confidence 9999999999999999999999999874 4555554 36999999874 565432 236778999 5
Q ss_pred cCCCCCCHHHHHHHhCC-CHHHHHHHHHHhC
Q 004509 719 RFGASAPAGKIYKEFGI-TAEAVITAAKEVC 748 (748)
Q Consensus 719 ~f~~~G~~~~l~~~~gl-~~e~I~~~i~~ll 748 (748)
.+ ++...+++++++ ++++|+++|++++
T Consensus 323 ~~---~p~~~~le~~~~p~~~~i~~a~~~~~ 350 (356)
T PLN02683 323 VP---MPYAANLERLALPQVEDIVRAAKRAC 350 (356)
T ss_pred cC---CCccHHHHHhhCCCHHHHHHHHHHHH
Confidence 43 456667777776 9999999999874
No 31
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1.4e-50 Score=437.96 Aligned_cols=294 Identities=19% Similarity=0.215 Sum_probs=241.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCccE
Q 004509 437 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 515 (748)
Q Consensus 437 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~Pi 515 (748)
+.++|++++++|.+++++||+++++++|++.+++. ++.++.|++ +| |+||||+|||||+|||+|+|||+.| ++||
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~-~~~~~~~~~-~fgp~R~~d~gIaE~~~vg~AaGlA~~G--~~Pi 78 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGA-YKVTQGLLE-QFGPKRVIDTPITEHGFAGLAVGAAFAG--LRPI 78 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCc-chhhHHHHH-HhCCCceeecchhHHHHHHHHHHHHHcC--CeeE
Confidence 35799999999999999999999999999765542 222356876 79 9999999999999999999999999 5999
Q ss_pred EEeeh-hHHHHHHHHHHHh-hccC------CCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHH
Q 004509 516 CATFF-VFTDYMRAAIRIS-ALCE------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 587 (748)
Q Consensus 516 v~~f~-~F~~r~~dqIr~~-a~~~------~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~ 587 (748)
+++|+ +|++|+||||++. |+++ +||.+++.+++..++.+|+|||...+ ++||+||||+|++|+|+.|++.+
T Consensus 79 v~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~ 157 (327)
T PRK09212 79 VEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGL 157 (327)
T ss_pred EEeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHH
Confidence 99887 7889999999875 8774 44444444577667889999944444 99999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEcCCCCC---CCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEE
Q 004509 588 YKVAVANRKRPSILALSRQKLP---HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVR 664 (748)
Q Consensus 588 l~~a~~~~~~P~~irl~r~~~~---~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~ 664 (748)
|+++++ .++|+|||++|...+ .++++ .+.+++|+++++++ |.|++||+||+++..|++|++.|+++||+++
T Consensus 158 l~~a~~-~~~Pv~i~~~~~~~~~~~~~~~~-~~~~~~Gk~~vl~~----G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~ 231 (327)
T PRK09212 158 LKTAIR-DPNPVIFLENEILYGHSHEVPEE-EESIPIGKAAILRE----GSDVTIVTFSIQVKLALEAAELLEKEGISVE 231 (327)
T ss_pred HHHHHh-CCCcEEEEEchhhcCCCCCCCCC-CccccCCeeEEEEe----CCCEEEEEccHHHHHHHHHHHHHHhcCCcEE
Confidence 999996 599999987665443 22222 34688999999987 7999999999999999999999999999999
Q ss_pred EEecCChhhHHHHHHHHhhhhccCCCceEEEEcccccc-Ccchhh------------cCCccEEee-CcCCCCCCHHHHH
Q 004509 665 VVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-DRFGASAPAGKIY 730 (748)
Q Consensus 665 VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~-G~~~~v------------~~~~~~ig~-d~f~~~G~~~~l~ 730 (748)
|||+++++|||.+.+. +.+.+++ .||++|++... |+++.+ ..++.+++. |.|++.| +++
T Consensus 232 vi~~~~l~Pld~~~i~--~~~~~~~--~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~l 304 (327)
T PRK09212 232 VIDLRTLRPLDTETII--ESVKKTN--RLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANL 304 (327)
T ss_pred EEEEecCCCCCHHHHH--HHHHhCC--eEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHH
Confidence 9999999999998764 3444443 36999999875 454321 235677888 6787764 899
Q ss_pred HHhCC-CHHHHHHHHHHhC
Q 004509 731 KEFGI-TAEAVITAAKEVC 748 (748)
Q Consensus 731 ~~~gl-~~e~I~~~i~~ll 748 (748)
+++|| ++++|+++|++++
T Consensus 305 e~~~l~~~~~I~~~i~~~~ 323 (327)
T PRK09212 305 EKLALPSEEDIIEAVKKVC 323 (327)
T ss_pred HHhcCCCHHHHHHHHHHHH
Confidence 99998 9999999999874
No 32
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-49 Score=429.18 Aligned_cols=295 Identities=21% Similarity=0.235 Sum_probs=244.0
Q ss_pred cchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCcc
Q 004509 436 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 514 (748)
Q Consensus 436 ~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~P 514 (748)
.+.++|++++++|.+++++||+++++++|++.+++. +..+.+|++ +| |+||||+||+||+|+|+|+|||++| ++|
T Consensus 33 ~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~-~~~~~~f~~-~fgP~R~id~GIaEq~~vg~AaGlA~~G--~~P 108 (355)
T PTZ00182 33 VKMNVREAINSALDEELARDPKVFVLGEDVAQYGGV-YKCTKGLLD-KYGPDRVFDTPITEQGFAGFAIGAAMNG--LRP 108 (355)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCc-hhhhHHHHH-HhCCCceeecCccHHHHHHHHHHHHhCC--CEE
Confidence 357899999999999999999999999999743221 122467876 79 9999999999999999999999999 599
Q ss_pred EEEe-ehhHHHHHHHHHHHh-hccC------CCeEEEEecCCCccCCCCCCC-CChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004509 515 YCAT-FFVFTDYMRAAIRIS-ALCE------AGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETA 585 (748)
Q Consensus 515 iv~~-f~~F~~r~~dqIr~~-a~~~------~pVi~v~t~~g~~~g~dG~TH-q~~edia~lr~iPnl~V~~Psd~~e~~ 585 (748)
|+++ |++|++|++|||++. |+++ .||.+++++.+.++|.+|+|| |..+ ++||+||||+|++|+|+.|++
T Consensus 109 vv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~~ 186 (355)
T PTZ00182 109 IAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFE--AYFAHVPGLKVVAPSDPEDAK 186 (355)
T ss_pred EEEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHH--HHHhcCCCCEEEeeCCHHHHH
Confidence 9997 899999999999886 7753 455555556777789999999 5553 999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcC----CCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCC
Q 004509 586 GAYKVAVANRKRPSILALSR----QKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGK 661 (748)
Q Consensus 586 ~~l~~a~~~~~~P~~irl~r----~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi 661 (748)
.+++++++ .++|+||++|| ...+..+.+ .+.+++|+++++++ |.|++||++|+++..|++|++.|+++||
T Consensus 187 ~~l~~a~~-~~~P~~i~~p~~l~r~~~~~~~~~-~~~~~~Gk~~vl~~----G~di~Iia~Gs~~~~aleAa~~L~~~Gi 260 (355)
T PTZ00182 187 GLLKAAIR-DPNPVVFFEPKLLYRESVEVVPEA-DYTLPLGKAKVVRE----GKDVTIVGYGSQVHVALKAAEELAKEGI 260 (355)
T ss_pred HHHHHHHh-CCCcEEEEeehHHhCCCCCCCCcc-cccccCCcceEecC----CCCEEEEEeCHHHHHHHHHHHHHHhCCC
Confidence 99999997 58999997665 333333322 24578899999887 6899999999999999999999999999
Q ss_pred cEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcccccc-Ccchhh------------cCCccEEee-CcCCCCCCHH
Q 004509 662 AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-DRFGASAPAG 727 (748)
Q Consensus 662 ~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~-G~~~~v------------~~~~~~ig~-d~f~~~G~~~ 727 (748)
+++|||+++++|||.+.+. +.+.+++ .||++|||... ||++.+ ..++.++|+ |.|+++..
T Consensus 261 ~v~vI~~~~l~Pld~e~i~--~~~~~~~--~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~-- 334 (355)
T PTZ00182 261 SCEVIDLRSLRPWDRETIV--KSVKKTG--RCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAK-- 334 (355)
T ss_pred cEEEEEEeeCCCCCHHHHH--HHHhcCC--EEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCCh--
Confidence 9999999999999998764 3343333 36999999874 565432 346788999 78887644
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 004509 728 KIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 728 ~l~~~~gl~~e~I~~~i~~ll 748 (748)
.|++.+.+++++|+++|++++
T Consensus 335 ~le~~~~~~~~~i~~~~~~~~ 355 (355)
T PTZ00182 335 NLEPAYLPDKEKVVEAAKRVL 355 (355)
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 489999999999999999875
No 33
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-45 Score=378.97 Aligned_cols=293 Identities=19% Similarity=0.203 Sum_probs=243.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCccEE
Q 004509 438 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 516 (748)
Q Consensus 438 ~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv 516 (748)
+++++|++++|.+.|++|++|+++++|++..++. ++.+..+++ +| ++|+||++|+|.+++|+|.|+|+.| +|||+
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGv-f~~T~GL~~-kfG~~RV~DTPiaE~gi~G~avGaA~~G--lrPiv 77 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGV-FRVTKGLQE-KFGEERVIDTPIAESGIAGIAVGAALTG--LRPIV 77 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCCh-hhhchhHHH-HhCccceecCccchhhhHHHHHHHHHcC--CcceE
Confidence 4789999999999999999999999999766554 444455655 67 4699999999999999999999999 69999
Q ss_pred E-eehhHHHHHHHHHHHh-h---c-----cCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHH
Q 004509 517 A-TFFVFTDYMRAAIRIS-A---L-----CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 586 (748)
Q Consensus 517 ~-~f~~F~~r~~dqIr~~-a---~-----~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~ 586 (748)
+ +|.+|+.-++|||-+. + | .++|+++++. .|.+.+ |+.||++.-.++|.++||++|++|++++|+++
T Consensus 78 Eiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p-~G~g~~--~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKG 154 (324)
T COG0022 78 EIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTP-NGGGIG--GGAQHSQSLEALFAHIPGLKVVMPSTPYDAKG 154 (324)
T ss_pred EEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcC-CCCCCC--chhhccCCHHHHHhcCCCceEEecCChHHHHH
Confidence 8 5999999999998765 2 2 4799999973 444444 55666777779999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCC----CCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc
Q 004509 587 AYKVAVANRKRPSILALSRQKL----PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 662 (748)
Q Consensus 587 ~l~~a~~~~~~P~~irl~r~~~----~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~ 662 (748)
+|+.|++ .++|+++..++... ..++ +..+.+++|++.++|+ |+|+|||+||.||+.+++||++|+++||+
T Consensus 155 LL~aAIr-d~dPViflE~k~lY~~~~~eVP-~~~Y~iPlGkA~i~re----G~DvTivtyg~mv~~al~AAe~l~~~Gis 228 (324)
T COG0022 155 LLKAAIR-DPDPVIFLEHKRLYRSFKGEVP-EEDYTIPLGKAKIVRE----GSDVTIVTYGAMVHTALEAAEELEKEGIS 228 (324)
T ss_pred HHHHHhc-CCCCEEEEecHHHhcccccCCC-CCCccccccceeeEec----CCceEEEEechHHHHHHHHHHHHhhcCCC
Confidence 9999997 69999998654221 1222 3457799999999998 79999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchh------------hcCCccEEee-CcCCCCCCHHHH
Q 004509 663 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKI------------VGSKGKAIGI-DRFGASAPAGKI 729 (748)
Q Consensus 663 v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~------------v~~~~~~ig~-d~f~~~G~~~~l 729 (748)
++|||+||+.|||.+++. +||.|||+. +|+.|....+|++.. +.+++.++.- |...+. ...|
T Consensus 229 ~EVIDLRTl~PlD~etIi--~SvkKTgR~-viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~--~~~l 303 (324)
T COG0022 229 AEVIDLRTLSPLDKETII--ASVKKTGRL-VIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPY--SAAL 303 (324)
T ss_pred eEEEeccccCccCHHHHH--HHHHhhCcE-EEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCc--chhH
Confidence 999999999999999984 899999975 477777778887542 3456666655 665542 4578
Q ss_pred HHHhCCCHHHHHHHHHHhC
Q 004509 730 YKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 730 ~~~~gl~~e~I~~~i~~ll 748 (748)
.+.+-++++.|++++++++
T Consensus 304 E~~~lp~~~~I~~av~~v~ 322 (324)
T COG0022 304 EKAYLPNPERIVAAVKKVL 322 (324)
T ss_pred HhhhCCCHHHHHHHHHHHh
Confidence 8899999999999999875
No 34
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=6.9e-42 Score=405.33 Aligned_cols=476 Identities=14% Similarity=0.114 Sum_probs=330.6
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc-chhhHHHHHHHHHHcCCC--cEEEEEECCCCcc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHISI 274 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~Eal~~A~~~~L~--~li~Ivd~N~~~i 274 (748)
.+++|...|+|+|.|+|.++++..+ .+.....++|+.|||++ .+|.++|+||+|+.|+|+ ++|+||+||+|++
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~----~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~ 388 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDG----QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGF 388 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCc----ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE
Confidence 3778999999999999999774200 11112678999999998 799999999999999995 6999999999999
Q ss_pred ccccccc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCc
Q 004509 275 DGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSA 350 (748)
Q Consensus 275 ~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~ 350 (748)
+++.... ....+.+++++||++++.| ||+ |++++++|++.|.+ ..+||++|++.|+|-+||...+++ .+
T Consensus 389 tT~~~~~~s~~~~sd~Ak~~giP~~~V-DG~-D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p-~y---- 461 (924)
T PRK09404 389 TTSPPDDRSTPYCTDVAKMVQAPIFHV-NGD-DPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEP-SF---- 461 (924)
T ss_pred eeCHHHhccchhHHHHHeecCCcEEEE-cCC-CHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCC-cC----
Confidence 9987543 3456788999999999999 999 99999999998876 357999999999999999876533 22
Q ss_pred CchhhHHHHHHhcCCCCCCCCCchhHHHHHHH-HHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCC----CCCccc
Q 004509 351 LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ----LPAGWE 425 (748)
Q Consensus 351 ~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~----~p~~~~ 425 (748)
.++++++..++. .+ ....|++ ++++|...++++.+...++.+. +.+.++.+.... ++..|.
T Consensus 462 r~p~ey~~~~~~----~d-------pi~~~~~~Li~~G~lt~~e~~~i~~~~~~~---v~~a~~~A~~~~~~~~~~~~~~ 527 (924)
T PRK09404 462 TQPLMYKKIKKH----PT-------TRELYADKLVAEGVITEEEADEMVNEYRDA---LDAGFEVVKEWRPADWLAGDWS 527 (924)
T ss_pred CCHHHHHHHHhc----CC-------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHHHHhcCcccccccccc
Confidence 245666654431 12 2345554 4555544444433332222221 111111111000 011121
Q ss_pred ------------c---------------cCCC-CC----------------CCCcchhHHHHHHHHHHHHHHhCCCEEEE
Q 004509 426 ------------K---------------ALPT-YT----------------PESPAEATRNLSQTCLNALAKTLPGLLGG 461 (748)
Q Consensus 426 ------------~---------------~~p~-~~----------------~~~~~~~~r~a~~~~L~~l~~~~p~vv~~ 461 (748)
. .+|. +. .+....++..|...++..+++++++|++.
T Consensus 528 ~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~ 607 (924)
T PRK09404 528 PYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLS 607 (924)
T ss_pred cccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 0 1121 10 11233578889999999999999999999
Q ss_pred ecCCCCC-------------ccccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCcc--EEE-eehhHHH
Q 004509 462 SADLASS-------------NMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP--YCA-TFFVFTD 524 (748)
Q Consensus 462 saDl~~s-------------~~~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~P--iv~-~f~~F~~ 524 (748)
++|++.. ++..+..+..+.+ +| |+|++|++|+|.+++|++.|+|+.| ++| |++ .|.+|+.
T Consensus 608 GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~-~~g~~rV~nsplsE~~~~G~~~G~a~~g--~~~l~i~E~qfgDF~~ 684 (924)
T PRK09404 608 GQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSE-GQASFEVYDSPLSEEAVLGFEYGYSTAE--PNTLVIWEAQFGDFAN 684 (924)
T ss_pred eeeCCCCcccccchhccccCCCCEeccccchhh-hcCCceEecCcchHHHHHHHHHHHHhcC--CCCceEEEEecccccc
Confidence 9999742 2222333445544 45 8999999999999999999999999 464 886 5999986
Q ss_pred ---HHHHHHHHhh----ccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcC--CCcEEEeeCCHHHHHHHHHHHH-Hc
Q 004509 525 ---YMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM--PNILMLRPADGNETAGAYKVAV-AN 594 (748)
Q Consensus 525 ---r~~dqIr~~a----~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~i--Pnl~V~~Psd~~e~~~~l~~a~-~~ 594 (748)
.++||+-+.+ ....++++++.|+ + +..|+-||+..-.++|.+. |||+|+.|+++.++.++|+.++ +.
T Consensus 685 ~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G-~--~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~ 761 (924)
T PRK09404 685 GAQVVIDQFISSGEQKWGRLSGLVMLLPHG-Y--EGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRP 761 (924)
T ss_pred chHHHHHHHHHHHHHHhcCccCeEEEecCc-C--CCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhC
Confidence 7799976543 1246788887544 3 3348888877777888666 6999999999999999999865 54
Q ss_pred CCCcEEEEEcCCCCCCCCC-CCccccccceeE-EecCCC-CCCCCE--EEEEeChhHHHHHHHHHHHHhCCCcEEEEecC
Q 004509 595 RKRPSILALSRQKLPHLAG-TSIDGVEKGAYI-ISDNSS-GNKPDV--ILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 669 (748)
Q Consensus 595 ~~~P~~irl~r~~~~~~~~-~~~~~~~~G~~~-v~~~~~-~~g~dv--tlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~ 669 (748)
..+|++|..+|.-+..... .+...+..|.+. ++.+.. -.+.|| +||++|-++..++++++.+. ..+++||+++
T Consensus 762 ~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le 839 (924)
T PRK09404 762 FRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDIDELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIE 839 (924)
T ss_pred CCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeecccccccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEee
Confidence 3599999987644321000 011112222221 111100 015689 79999999999999988553 2499999999
Q ss_pred ChhhHHHHHHHHhhhhccCC--CceEEEEccccccCcchhh
Q 004509 670 SWELFDEQSDAYKESVLPAA--VSARVSIEAGSTFGWEKIV 708 (748)
Q Consensus 670 ~l~pld~~~~~~~~~v~~~~--~~~vv~vE~~~~~G~~~~v 708 (748)
+|.|||.+.+. +++.|++ ..+|++.|+....|...|+
T Consensus 840 ~L~P~~~~~i~--~~v~k~~~~~~~v~vqEe~~n~G~~~~~ 878 (924)
T PRK09404 840 QLYPFPHEELA--AELAKYPNAKEVVWCQEEPKNQGAWYFI 878 (924)
T ss_pred eeCCCCHHHHH--HHHHhcCCCCeEEEEeeCCCCCCcHHHH
Confidence 99999998764 6776753 2466778888888865543
No 35
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=5.2e-44 Score=359.83 Aligned_cols=195 Identities=27% Similarity=0.436 Sum_probs=177.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCC
Q 004509 108 SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPE 187 (748)
Q Consensus 108 ~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~~~r~~~s~~~Ghp~ 187 (748)
+||+|++||++||+++||+. +|+ +|||||+|+||++ |++++++|+ .++|.+||+.++ ++|||+
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~gH~~---~~~~~~~g~----~~~l~~~~~~~~-~~g~p~ 63 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYV---FDS------PKDKIIWDVGHQA---YPHKILTGR----RDQFHTLRQYGG-LSGFTK 63 (195)
T ss_pred CCCCCcchhHHHHHHHHHHh---cCC------CCCeEEEecccHH---HHHHHHHCC----HHHHhhhhcCCC-CCCCCc
Confidence 59999999999999999964 553 6999999999999 777777994 689999999999 889999
Q ss_pred CCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEE
Q 004509 188 NFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267 (748)
Q Consensus 188 ~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Iv 267 (748)
+.++|++++++|++|+++|.|+|+|+|.|+++ .+++|||++|||+++||++|||+++|+++ +.|+++|+
T Consensus 64 ~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~~~li~vv 132 (195)
T cd02007 64 RSESEYDAFGTGHSSTSISAALGMAVARDLKG----------KKRKVIAVIGDGALTGGMAFEALNNAGYL-KSNMIVIL 132 (195)
T ss_pred CCCCCCceECCCchhhhHHHHHHHHHHHHHhC----------CCCeEEEEEcccccccChHHHHHHHHHHh-CCCEEEEE
Confidence 87889999999999999999999999999765 37899999999999999999999999999 56999999
Q ss_pred ECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCC
Q 004509 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGS 337 (748)
Q Consensus 268 d~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G~ 337 (748)
|||+++++++++ ++.++|+++||++..++||| |++++.++++++++ .++|++|+++|+||+|+
T Consensus 133 dnN~~~~~~~~~-----~~~~~~~a~G~~~~~~vdG~-d~~~l~~a~~~a~~-~~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 133 NDNEMSISPNVG-----TPGNLFEELGFRYIGPVDGH-NIEALIKVLKEVKD-LKGPVLLHVVTKKGKGY 195 (195)
T ss_pred ECCCcccCCCCC-----CHHHHHHhcCCCccceECCC-CHHHHHHHHHHHHh-CCCCEEEEEEEecccCc
Confidence 999999998776 47889999999999733999 99999999999987 78999999999999985
No 36
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=1e-44 Score=368.62 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHH
Q 004509 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (748)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l 161 (748)
++..| |++||++||..+++.+++ ++||++++||+||+++|||+. ||+ ++|++|||.|||+ |+|++|
T Consensus 13 ls~~e-L~~La~eiR~~ii~~vs~-~GGHl~snLGvVELTiALH~v---Fd~------p~DkivwDvGHQ~---Y~HKiL 78 (270)
T PF13292_consen 13 LSIEE-LEQLAQEIREFIIETVSK-TGGHLASNLGVVELTIALHYV---FDS------PKDKIVWDVGHQA---YVHKIL 78 (270)
T ss_dssp S-GGG-HHHHHHHHHHHHHHHCTC-CCSTHHHHHCCHHHHHHHHHH---S-T------TTSEEEESSSTT----HHHHHC
T ss_pred CCHHH-HHHHHHHHHHHHHHHHhh-cCCCCCCCccHHHHHHHHHHH---hCC------CCCeEEEeccccc---chhhhc
Confidence 44444 999999999999999987 899999999999999999999 886 8999999999999 999999
Q ss_pred cCCCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcch
Q 004509 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (748)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (748)
||+ .+.+.+.||.+|.+ |||.+.|++++.|.+|+.|+++|+|+|||.|+++.+ .+++||++||||
T Consensus 79 TGR----~~~f~TlRq~gGlS-GF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~----------~~~~vVaVIGDG 143 (270)
T PF13292_consen 79 TGR----RDRFHTLRQYGGLS-GFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKG----------EDRKVVAVIGDG 143 (270)
T ss_dssp TTT----CCCGGGTTSTTS---SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHT----------S---EEEEEETT
T ss_pred cCc----HHHhchhhhcCCcC-CCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcC----------CCCcEEEEECCc
Confidence 995 58899999999987 999999999999999999999999999999999886 378999999999
Q ss_pred hcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc---------------ccc---------------------c
Q 004509 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA---------------FTE---------------------N 285 (748)
Q Consensus 242 ~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~---------------~~~---------------------~ 285 (748)
++..||+|||||.|+..+ .++++|+|||+|+|+.+++.. ... .
T Consensus 144 alt~Gma~EALN~~g~~~-~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s 222 (270)
T PF13292_consen 144 ALTGGMAFEALNNAGHLK-SNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKES 222 (270)
T ss_dssp GGGSHHHHHHHHHHHHHT--SEEEEEEE-SBSSSB--SSHCCC-------------------------------------
T ss_pred chhHHHHHHHHHHHHhcC-CCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Confidence 999999999999999998 599999999999999886410 000 0
Q ss_pred H----HHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 286 V----DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 286 ~----~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
+ ...|+++||+|+.++||| |+++|.++|+++++ .++|++||+.|
T Consensus 223 ~K~~~~~lFe~LG~~Y~GPiDGH-dl~~Li~~l~~~K~-~~gPvllHV~T 270 (270)
T PF13292_consen 223 LKGFSPNLFEELGFDYIGPIDGH-DLEELIEVLENAKD-IDGPVLLHVIT 270 (270)
T ss_dssp ------CCCHHCT-EEEEEEETT--HHHHHHHHHHHCC-SSSEEEEEEE-
T ss_pred hhhhhHHHHHHcCCeEEeccCCC-CHHHHHHHHHHHhc-CCCCEEEEEeC
Confidence 1 135889999999999999 99999999999998 79999999988
No 37
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=6.7e-41 Score=394.87 Aligned_cols=471 Identities=15% Similarity=0.114 Sum_probs=327.0
Q ss_pred cccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc-chhhHHHHHHHHHHcCCCc--EEEEEECCCC
Q 004509 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLGK--LIAFYDDNHI 272 (748)
Q Consensus 196 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~Eal~~A~~~~L~~--li~Ivd~N~~ 272 (748)
...++|+...|+|+|.|.|.++++... .+..+..++|++|||++ .+|.++|+||+|+.|+|+. +|+||.||+|
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~----~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqy 387 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDS----PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQI 387 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCc----ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCE
Confidence 345789999999999999998764200 11125688999999997 7999999999999999943 4999999999
Q ss_pred ccccccccc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccC
Q 004509 273 SIDGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHG 348 (748)
Q Consensus 273 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~ 348 (748)
+++++.... ....+.+++++||++++.| ||+ |+++++.+++.|.+ ..+||++|++.|+|-+||...+++..+
T Consensus 388 g~tT~~~~~~s~~~~sd~Ak~ygiP~~~V-DG~-D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~y-- 463 (929)
T TIGR00239 388 GFTTNPLDARSTPYCSDLAKMIQAPIFHV-NAD-DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSAT-- 463 (929)
T ss_pred EEEEcHHHhcCccCHHHHheecCCCEEEE-CCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccC--
Confidence 999976443 3446788999999999999 999 99999999998876 357999999999999999876544322
Q ss_pred CcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHH-HHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCC--CCC--c
Q 004509 349 SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ--LPA--G 423 (748)
Q Consensus 349 ~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~--~p~--~ 423 (748)
.+++++..++. .+ .+..|++ ++++|...++++.+..+++.+. +.+.++.....+ .+. .
T Consensus 464 ---rp~~~~~i~~~----~d-------Pi~~~~~~Li~~Gv~te~e~~~i~~~~~~~---v~~a~~~~~~~~~~~~~~~~ 526 (929)
T TIGR00239 464 ---QPLMYQKIKKH----PT-------PRKVYADKLVSEGVATEEDVTEMVNLYRDA---LEAADCVVPSWREMNTASFT 526 (929)
T ss_pred ---CHHHHHHHHhC----CC-------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHhhhccCCccccccc
Confidence 13444433221 12 2345554 5555654444444333332221 111111111100 000 1
Q ss_pred ccc---------------------------cCCC-C---------------C--CCCcchhHHHHHHHHHHHHHHhCCCE
Q 004509 424 WEK---------------------------ALPT-Y---------------T--PESPAEATRNLSQTCLNALAKTLPGL 458 (748)
Q Consensus 424 ~~~---------------------------~~p~-~---------------~--~~~~~~~~r~a~~~~L~~l~~~~p~v 458 (748)
|.. .+|. + . .+....++..|...++..++.++++|
T Consensus 527 ~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V 606 (929)
T TIGR00239 527 WSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPV 606 (929)
T ss_pred cccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCE
Confidence 110 0111 1 0 01123578899999999999999999
Q ss_pred EEEecCCCCCcc-------------ccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCccE--EE-eehh
Q 004509 459 LGGSADLASSNM-------------TLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY--CA-TFFV 521 (748)
Q Consensus 459 v~~saDl~~s~~-------------~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~Pi--v~-~f~~ 521 (748)
++.++|++..+. ..+..+..+.. +| +.|++|++|+|.+++|++.|+|+.|. +|+ ++ +|.+
T Consensus 607 ~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~-~~g~~rV~nsplSE~a~~G~~~G~a~~g~--~~l~i~E~qfgD 683 (929)
T TIGR00239 607 RLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHN-GQGAFRVWNSVLSEESVLGFEYGYATTSP--RTLVIWEAQFGD 683 (929)
T ss_pred EEEeeeCCCcccccccccccccccCceeecccchhh-hcCCeeEEcCCccHHHHHHHHHhHHhcCC--CCceEEEEeccc
Confidence 999999975221 11223344544 45 79999999999999999999999994 774 65 6999
Q ss_pred HHH---HHHHHHHHhh----ccCCCeEEEEecCCCccCCCCCCCCChhhhHHH--hcCCCcEEEeeCCHHHHHHHHH-HH
Q 004509 522 FTD---YMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF--RAMPNILMLRPADGNETAGAYK-VA 591 (748)
Q Consensus 522 F~~---r~~dqIr~~a----~~~~pVi~v~t~~g~~~g~dG~THq~~edia~l--r~iPnl~V~~Psd~~e~~~~l~-~a 591 (748)
|+. .++||+-+.+ ....+++++..|+ + +..|+-||+..-.++| .++|||+|+.|+++.|++++|+ ++
T Consensus 684 F~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G-~--~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa 760 (929)
T TIGR00239 684 FANGAQVVIDQFISSGEQKWGQMSGLVMLLPHG-Y--EGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQA 760 (929)
T ss_pred hhcchHHHHHHHHHHHHHHhcCccCeEEEecCc-C--CCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHH
Confidence 985 7799986542 1347788887544 3 3357888776666888 8999999999999999999999 68
Q ss_pred HHcCCCcEEEEEcCCCCC---------CCCCCCccccccceeEEecCCC-CCCCCEE-EEEeChhHHHHHHHHHHHHhCC
Q 004509 592 VANRKRPSILALSRQKLP---------HLAGTSIDGVEKGAYIISDNSS-GNKPDVI-LIGTGSELEIAAKAAEELRKGG 660 (748)
Q Consensus 592 ~~~~~~P~~irl~r~~~~---------~~~~~~~~~~~~G~~~v~~~~~-~~g~dvt-lva~G~~v~~al~Aa~~L~~~G 660 (748)
+++.++|+++..+|.-+. .+++. .+..+++.. .+++. ....+++ ||.|+.++..++++ +.++++|
T Consensus 761 ~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i~~~--~~~~~~~~~~~v~~vv~~sg~v~~~l~~-~~~~~~~ 836 (929)
T TIGR00239 761 LRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVIGEI--EESGLSLDPEGVKRLVLCSGKVYYDLHE-QRRKNGQ 836 (929)
T ss_pred HhCCCCCEEEeccHhhhcCccccCccccCCCC-Ccccccccc--cccccccCccCCcEEEEECchHHHHHHH-HHHhcCC
Confidence 875589999998765432 12211 122233221 11100 0023666 77777799999988 6777889
Q ss_pred CcEEEEecCChhhHHHHHHHHhhhhccCC--CceEEEEccccccC
Q 004509 661 KAVRVVSFVSWELFDEQSDAYKESVLPAA--VSARVSIEAGSTFG 703 (748)
Q Consensus 661 i~v~VId~~~l~pld~~~~~~~~~v~~~~--~~~vv~vE~~~~~G 703 (748)
++++|||+++|.|||.+.+. +++.|+. ..+|++-|+....|
T Consensus 837 ~~v~iirle~L~Pf~~~~i~--~sl~k~~~~~~~vw~qEep~n~G 879 (929)
T TIGR00239 837 KDVAIVRIEQLYPFPHKAVK--EVLQQYPNLKEIVWCQEEPLNMG 879 (929)
T ss_pred CCEEEEEeeeeCCCCHHHHH--HHHHhcCCCCeEEEEeccCCCCC
Confidence 99999999999999998774 6777764 24667778887777
No 38
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2e-37 Score=309.54 Aligned_cols=295 Identities=16% Similarity=0.198 Sum_probs=239.6
Q ss_pred cchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCcc
Q 004509 436 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 514 (748)
Q Consensus 436 ~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~P 514 (748)
..++.|+|++++|.+.+++||++++++++++-+++.+. ..+.+.+ +| +.|++|++|.|.+..|+|.|.|+.| +||
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~Gayk-vtkGL~~-K~G~~RV~DTPItE~gFtG~avGAA~~G--LrP 108 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYK-VTKGLLD-KFGDKRVLDTPITEMGFTGIAVGAAMAG--LRP 108 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeee-hhhhHHH-hcCCceeecCcchhcccchhhHhHHHhC--cch
Confidence 46788999999999999999999999999987766532 2222333 45 6899999999999999999999999 799
Q ss_pred EEE-eehhHHHHHHHHHHHhh----c-----cCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHH
Q 004509 515 YCA-TFFVFTDYMRAAIRISA----L-----CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 584 (748)
Q Consensus 515 iv~-~f~~F~~r~~dqIr~~a----~-----~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~ 584 (748)
||. +-..|...+.|||-|+| | +++|++|++ +.|.+.| -|+.|. +.-.+|+.++||++|++|++++|+
T Consensus 109 i~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRG-PnG~~~g-v~AqHS-Q~f~~wy~siPGlkvvapysaeda 185 (359)
T KOG0524|consen 109 ICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRG-PNGAAAG-VAAQHS-QDFASWYGSIPGLKVVAPYSAEDA 185 (359)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeC-CCCcccc-hhhhhh-hhhHHHhccCCCceEeccCChhhh
Confidence 996 45678889999998864 2 589999998 4566655 478884 444589999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEc----CCCCCCCCC--CCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHh
Q 004509 585 AGAYKVAVANRKRPSILALS----RQKLPHLAG--TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK 658 (748)
Q Consensus 585 ~~~l~~a~~~~~~P~~irl~----r~~~~~~~~--~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~ 658 (748)
+++|+.|++ .++|+++... ....+...+ .+.+.+++|++++.++ |+|||||++..++..||+||+.|.+
T Consensus 186 kGLlKaAIR-d~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~----G~~iTivt~Sr~v~~~leAA~~L~~ 260 (359)
T KOG0524|consen 186 KGLLKAAIR-DENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIERE----GTHITIVTYSRMVGHCLEAAETLVA 260 (359)
T ss_pred hhHHHHhcc-CCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeec----CCceEEEEechhHHHHHHHHHHHHh
Confidence 999999997 6999998743 222222211 1245678999999998 7999999999999999999999999
Q ss_pred CCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccc-cCcch------------hhcCCccEEee-CcCCCCC
Q 004509 659 GGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEK------------IVGSKGKAIGI-DRFGASA 724 (748)
Q Consensus 659 ~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~------------~v~~~~~~ig~-d~f~~~G 724 (748)
+|++++|||+|+|+|||.+++. .+|.|+++ +|+||+... +|.+. |+++++.++.- |.+.++
T Consensus 261 ~Gvs~EVInlrSirP~D~~tI~--~Sv~KT~~--lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PY- 335 (359)
T KOG0524|consen 261 KGVSAEVINLRSIRPFDIETIG--ASVKKTNR--LVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPY- 335 (359)
T ss_pred cCCCceeEeeeccCcccHHHHH--HHHhhhce--EEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCcc-
Confidence 9999999999999999999986 78999874 599999875 56543 34556666544 766655
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 004509 725 PAGKIYKEFGITAEAVITAAKEVC 748 (748)
Q Consensus 725 ~~~~l~~~~gl~~e~I~~~i~~ll 748 (748)
..+|.+..-++++.|+.++++++
T Consensus 336 -a~~lE~~a~p~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 336 -AKTLEDWAVPQPADIVTAVKKLC 358 (359)
T ss_pred -chhhHhhcCCCHHHHHHHHHHhh
Confidence 34788888899999999999864
No 39
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1.2e-35 Score=289.22 Aligned_cols=154 Identities=42% Similarity=0.582 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhH
Q 004509 443 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVF 522 (748)
Q Consensus 443 a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F 522 (748)
+++++|.+++++||+++++++|++.++. +..|.+ +||+||||+||+|++|+|+|+|||+.| ++||+++|..|
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~-----~~~~~~-~~p~r~i~~gIaE~~~vg~A~GlA~~G--~~pi~~~~~~f 73 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTG-----LDKFAK-KFPDRFIDVGIAEQNMVGIAAGLALHG--LKPFVSTFSFF 73 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCC-----cHHHHH-hCCCCeEEeChhHHHHHHHHHHHHHCC--CeEEEEECHHH
Confidence 5788999999999999999999986543 355766 799999999999999999999999999 59999999889
Q ss_pred HHHHHHHHHH-hhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEE
Q 004509 523 TDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSIL 601 (748)
Q Consensus 523 ~~r~~dqIr~-~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~i 601 (748)
++|++||||+ .|++++||+++++++|++.|++|+|||+++|++++|++||++|++|+|+.|+++++++|++ .++|+||
T Consensus 74 ~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~i 152 (156)
T cd07033 74 LQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYI 152 (156)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEE
Confidence 9999999995 5999999999999999998899999999999999999999999999999999999999997 4789999
Q ss_pred EEcC
Q 004509 602 ALSR 605 (748)
Q Consensus 602 rl~r 605 (748)
|++|
T Consensus 153 rl~~ 156 (156)
T cd07033 153 RLPR 156 (156)
T ss_pred EeeC
Confidence 9986
No 40
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=3.4e-33 Score=277.91 Aligned_cols=168 Identities=26% Similarity=0.303 Sum_probs=142.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccchHHHHHHHHHHHhcC-CCCccE
Q 004509 437 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS-PGLIPY 515 (748)
Q Consensus 437 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G-~~~~Pi 515 (748)
+.++|++++++|.+++++||+++++++|++++++...++ ...+ ..|+||||+||+|++|+|+|+|||+.| . ++||
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~--~~~~-~~~~r~i~~gIaE~~~vg~a~GlA~~G~~-~~~~ 77 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFG--LAFP-FGPGRFINTGIAEQNMVGMAAGLALAGGL-RPPV 77 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTT--HHBH-HTTTTEEE--S-HHHHHHHHHHHHHHSSS-EEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhh--cccc-CCCceEEecCcchhhccceeeeeeecccc-ccee
Confidence 578999999999999999999999999998655432211 1111 126799999999999999999999999 2 3788
Q ss_pred EEeehhHHH----HHHHHHHH-hhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 004509 516 CATFFVFTD----YMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKV 590 (748)
Q Consensus 516 v~~f~~F~~----r~~dqIr~-~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~ 590 (748)
+.+|++|+. |+++|++. .+++++||+ +++++|+++|.+|+|||+++|+++||+||||+|++|+|+.|++++|++
T Consensus 78 ~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~ 156 (178)
T PF02779_consen 78 ESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRA 156 (178)
T ss_dssp EEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHH
T ss_pred Eeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 889999999 99999985 599999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCCcEEEEEcCCCCC
Q 004509 591 AVAN-RKRPSILALSRQKLP 609 (748)
Q Consensus 591 a~~~-~~~P~~irl~r~~~~ 609 (748)
+++. .++|+|||++|+.+|
T Consensus 157 a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 157 AIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHSSSSSEEEEEEESSEES
T ss_pred HHHhCCCCeEEEEeeHHhCC
Confidence 9973 589999999998775
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.98 E-value=3e-32 Score=267.14 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCC-CccccccchHHHHHHHHHHHhcCCCCccEEE-eeh
Q 004509 443 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFF 520 (748)
Q Consensus 443 a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~-R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~-~f~ 520 (748)
+++++|.+++++||+++++++|++.+++. ...++.|++ +||+ ||||+||+||+|+|+|+|||+.| ++||++ +|+
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~-~~~~~~~~~-~~p~~R~~~~gIaEq~~vg~AaGlA~~G--~~pi~~~~~a 77 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGV-FKVTKGLLD-KFGPDRVIDTPIAEAGIVGLAVGAAMNG--LRPIVEIMFA 77 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCc-chHhHHHHH-hCCCceEEeCCCcHHHHHHHHHHHHHcC--CEEEEEeehH
Confidence 68889999999999999999999654321 112466876 7999 99999999999999999999999 599998 799
Q ss_pred hHHHHHHHHHHHh-hcc--------CCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHH
Q 004509 521 VFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 591 (748)
Q Consensus 521 ~F~~r~~dqIr~~-a~~--------~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a 591 (748)
+|+.|++||||+. |++ ++||++++.+.| ++.+|+|| +.+|+++||+||||+|++|+|+.|++.+++++
T Consensus 78 ~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~th-s~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~ 154 (167)
T cd07036 78 DFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQH-SQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAA 154 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhh-hhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999986 776 599999996555 56789996 58999999999999999999999999999999
Q ss_pred HHcCCCcEEEEEcC
Q 004509 592 VANRKRPSILALSR 605 (748)
Q Consensus 592 ~~~~~~P~~irl~r 605 (748)
++ .++|++|+.+|
T Consensus 155 ~~-~~~P~~~~e~k 167 (167)
T cd07036 155 IR-DDDPVIFLEHK 167 (167)
T ss_pred Hh-CCCcEEEEecC
Confidence 96 68999999875
No 42
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2e-30 Score=288.72 Aligned_cols=511 Identities=23% Similarity=0.303 Sum_probs=337.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCC-eEEEeCCCccHHHHHHHHHcCCC-------CCCHHHHh----h
Q 004509 107 NSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRD-RFVLSAGHGCMLQYALLHLAGYD-------SVQEDDLK----N 174 (748)
Q Consensus 107 ~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rD-r~I~s~GH~~~~~Ya~~~l~G~~-------~~~~~~l~----~ 174 (748)
--||+|++.+..-+.+-|=...=++| -+ -+|+..||+.+++-+..+|.|.+ +.+.+.|. .
T Consensus 59 ~lGHwGt~pg~s~~Y~H~nr~i~~~d--------~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~q 130 (793)
T COG3957 59 LLGHWGTQPGLSFIYAHLNRLISKYD--------ANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQ 130 (793)
T ss_pred hcccccCCCCchhhhhhhhHHHHhhC--------cceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHh
Confidence 47999999998876654433321222 34 36777799999999999999965 23344443 4
Q ss_pred hhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhh---HHHH
Q 004509 175 FRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---ANEA 251 (748)
Q Consensus 175 ~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~---~~Ea 251 (748)
|+-.+| .++|..+ ++||.....|.||++++.|.|.|+-.+ +-.+.|++|||+-.+|. .|-+
T Consensus 131 Fs~PgG-i~SH~~p-etPGsIhEGGeLGy~l~ha~gAa~d~P--------------dli~~~vvGDGeaetgplatsWhs 194 (793)
T COG3957 131 FSFPGG-IGSHVAP-ETPGSIHEGGELGYALSHAYGAAFDNP--------------DLIVACVVGDGEAETGPLATSWHS 194 (793)
T ss_pred ccCCCC-cccccCC-CCCCccCcCcchhHHHHHHHHhhcCCC--------------CcEEEEEecccccccCcccccccc
Confidence 554445 3468875 799999999999999999999997543 78999999999777653 5555
Q ss_pred HHHHHHcCCCcEEEEEECCCCcccccccc--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHH----HHH---------
Q 004509 252 SSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA----IKE--------- 316 (748)
Q Consensus 252 l~~A~~~~L~~li~Ivd~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~a----l~~--------- 316 (748)
-.+..--+-..++-|+.-|+|.|..++.. ...+++.+.|++|||+.+.| +|+ |+++..+. +..
T Consensus 195 ~kf~np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~v-eg~-d~~d~hq~mAa~ldt~~~~i~~iq 272 (793)
T COG3957 195 NKFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFV-EGA-DPADMHQLMAAVLDTAFEEIQRIQ 272 (793)
T ss_pred ccccCccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEe-cCC-ChHHhhhhHHHHHHHHHHHHHHHH
Confidence 44444444567999999999999998854 34567999999999999999 898 88773322 222
Q ss_pred --HHh--cCCCCE--EEEEEeeeccCCCCC------CCCccccCCcCc-----hhhHHHHHHhcCCCCCCCCCchhHHHH
Q 004509 317 --AKA--VTDKPT--LIRVTTTIGFGSPNK------ANSYSVHGSALG-----AKEVDATRKNLGWPYEPFHVPEDVKKH 379 (748)
Q Consensus 317 --a~~--~~~~P~--vI~~~T~kg~G~~~~------~~~~~~H~~~~~-----~~e~~~~~~~~~~~~~~~~v~~e~~~~ 379 (748)
++. ...+|. +|+++|.||++.+.. ++....|..|+. ++.+..+.+-+. .+.| +| +
T Consensus 273 ~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~-sy~p----~e---l 344 (793)
T COG3957 273 RRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLK-SYKP----EE---L 344 (793)
T ss_pred HHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCCCCCCchhhHHHHHHHH-hcCh----Hh---h
Confidence 221 123443 577999999987754 234456777653 222222211100 1111 11 1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCCCc------ccccCCCC--------CCCCcchhHHHHHH
Q 004509 380 WSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAG------WEKALPTY--------TPESPAEATRNLSQ 445 (748)
Q Consensus 380 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~p~~------~~~~~p~~--------~~~~~~~~~r~a~~ 445 (748)
|. +.|+....-|+ .. |. . ++++. ..|.. .+..+|++ .++........+++
T Consensus 345 fd---e~gaL~~e~~~-----~a---p~---~-~~Rm~-~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~~t~~lg 408 (793)
T COG3957 345 FD---EHGALKPELRE-----LA---PK---G-EERMG-ANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAESTTALG 408 (793)
T ss_pred hc---ccCCCCHHHHH-----hc---cc---c-ccccC-CCCcccCccccccCCCCChhhcCcccCCCCccchhhHHHHH
Confidence 11 11222111111 00 00 0 11111 11211 11124433 22322333456789
Q ss_pred HHHHHHHHhCCC-EEEEecCCCCCccc--ccccc-----------ccccccCCCCCccccccchHHHHHHHHHHHhcCCC
Q 004509 446 TCLNALAKTLPG-LLGGSADLASSNMT--LLKMF-----------GDFQKDTPEERNVRFGVREHGMGAICNGIALHSPG 511 (748)
Q Consensus 446 ~~L~~l~~~~p~-vv~~saDl~~s~~~--~~k~~-----------~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~ 511 (748)
+.+.++++.|++ +.++++|...|+.. .++.+ ++|. ...+|+++ .++|+.+.|++.|+++.|.
T Consensus 409 ~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~l--sp~GRV~e-~LSEh~c~Gwlegy~LtGr- 484 (793)
T COG3957 409 RFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFL--SPDGRVME-VLSEHACQGWLEGYLLTGR- 484 (793)
T ss_pred HHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCccccc--CCCceeeh-hhcHHHHHHHHHHHHhcCC-
Confidence 999999999998 99999998877754 22222 1221 24589999 6999999999999999997
Q ss_pred CccEEEeehhHHH---HHHHHH--HH-hh--------ccCCCeEEEEecCCCccCCCCCCCCChhhhH-HHhcCCC-cEE
Q 004509 512 LIPYCATFFVFTD---YMRAAI--RI-SA--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPN-ILM 575 (748)
Q Consensus 512 ~~Piv~~f~~F~~---r~~dqI--r~-~a--------~~~~pVi~v~t~~g~~~g~dG~THq~~edia-~lr~iPn-l~V 575 (748)
+-++++|..|+. -|++|. .. .| +..++.++ |..-.--+.+|.|||...-+. ++..+|+ ++|
T Consensus 485 -~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~--TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRv 561 (793)
T COG3957 485 -HGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLL--TSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRV 561 (793)
T ss_pred -ccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCccccee--ehhhhhcccCCCccCCchHHHHHHhhccCceeE
Confidence 899999999984 577762 11 12 23344443 333344689999999755443 3445555 699
Q ss_pred EeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCC--CCccccccceeEEecCC-CCCCCCEEEEEeChhH-HHHHH
Q 004509 576 LRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG--TSIDGVEKGAYIISDNS-SGNKPDVILIGTGSEL-EIAAK 651 (748)
Q Consensus 576 ~~Psd~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~--~~~~~~~~G~~~v~~~~-~~~g~dvtlva~G~~v-~~al~ 651 (748)
|.|+|++.+-.++..|+++.+.-.+|..+|++.|+... .....+..|...+.-.+ +++.+||++.+.|.+. .++++
T Consensus 562 yfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~la 641 (793)
T COG3957 562 YFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLA 641 (793)
T ss_pred ecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHH
Confidence 99999999999999999987888888889999887543 12234556655543321 1125789999999976 79999
Q ss_pred HHHHHHhCC--CcEEEEecCChhhH
Q 004509 652 AAEELRKGG--KAVRVVSFVSWELF 674 (748)
Q Consensus 652 Aa~~L~~~G--i~v~VId~~~l~pl 674 (748)
|++.|++++ ++++||++..+.-|
T Consensus 642 Aa~~L~e~~p~l~vRvVnVvdl~rL 666 (793)
T COG3957 642 AAQILREEGPELRVRVVNVVDLMRL 666 (793)
T ss_pred HHHHHHHhCccceEEEEEEecchhc
Confidence 999999998 99999987765544
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=2.9e-30 Score=254.50 Aligned_cols=163 Identities=32% Similarity=0.457 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHHHHhCC-CEEEEecCCCCCccccccccccccc--cCCCCCccccccchHHHHHHHHHHHhcCCCCccE
Q 004509 439 ATRNLSQTCLNALAKTLP-GLLGGSADLASSNMTLLKMFGDFQK--DTPEERNVRFGVREHGMGAICNGIALHSPGLIPY 515 (748)
Q Consensus 439 ~~r~a~~~~L~~l~~~~p-~vv~~saDl~~s~~~~~k~~~~f~~--~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Pi 515 (748)
++|++++++|.+++++++ +++++++|++.++++.. .+.|.. ..+|+||+|+||+|++|+++|+|||++|+ +||
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~--~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~--~pi 76 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR--GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGL--RPV 76 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc--CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCC--CcE
Confidence 478999999999999965 89999999987765321 111211 01344599999999999999999999994 999
Q ss_pred EEeehhHHHHHHHHHHHhhccCCCeEEEEecC-CCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc
Q 004509 516 CATFFVFTDYMRAAIRISALCEAGVIYVMTHD-SIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 594 (748)
Q Consensus 516 v~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~-g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~ 594 (748)
+++|..|+.|+++|+|+.+.++ +++++++++ |...|.+|+|||+++|++++|+|||++|++|+|+.|++++|+++++.
T Consensus 77 ~~~~~~f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~ 155 (168)
T smart00861 77 VAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRR 155 (168)
T ss_pred EEeeHHHHHHHHHHHHHhCccc-CCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhC
Confidence 9999999999999999985554 555566664 67789999999999999999999999999999999999999999975
Q ss_pred CCCcEEEEEcCC
Q 004509 595 RKRPSILALSRQ 606 (748)
Q Consensus 595 ~~~P~~irl~r~ 606 (748)
.++|+|||++|+
T Consensus 156 ~~~p~~i~~~~~ 167 (168)
T smart00861 156 DDGPPVIRLERK 167 (168)
T ss_pred CCCCEEEEecCC
Confidence 578999999875
No 44
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.97 E-value=3.9e-30 Score=253.60 Aligned_cols=291 Identities=16% Similarity=0.141 Sum_probs=228.2
Q ss_pred cchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCC-CCCccccccchHHHHHHHHHHHhcCCCCcc
Q 004509 436 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 514 (748)
Q Consensus 436 ~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~-p~R~id~GIaE~~~vg~AaGlA~~G~~~~P 514 (748)
++++.-++++++|.-.++.||+-+++++|++-.+ .++..-++++ +| .+|+||++++||+++|+..|+|..|- +.
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fgg--vfrct~gl~~-kfgk~rvfntplceqgivgfgig~aa~g~--~a 113 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGG--VFRCTTGLAE-KFGKDRVFNTPLCEQGIVGFGIGLAAMGA--TA 113 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccce--EEEeecchHH-HhCccccccCchhhcccceechhhhhccc--ce
Confidence 4677788999999999999999999999997433 2333333443 45 49999999999999999999999995 89
Q ss_pred EEEe-ehhHHHHHHHHHHHhh----c-----cCCC-eEEEEecCCCccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHH
Q 004509 515 YCAT-FFVFTDYMRAAIRISA----L-----CEAG-VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 583 (748)
Q Consensus 515 iv~~-f~~F~~r~~dqIr~~a----~-----~~~p-Vi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~Psd~~e 583 (748)
|..+ |++++--+||||-+.+ | .++. ..++. +.|. +|..|--| ++.-.++|.+.||++|+.|..+.+
T Consensus 114 iaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~-p~ga-vghg~~yh-sqspeaff~h~pgikvviprsp~q 190 (362)
T KOG0525|consen 114 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRA-PWGA-VGHGALYH-SQSPEAFFCHVPGIKVVIPRSPRQ 190 (362)
T ss_pred EEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEec-cccc-cccccccc-cCCchhheecCCCceEEecCCcch
Confidence 9986 8888888999997742 2 2454 55554 3343 57645444 566779999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEc----CCCCCCCCCCCccccccceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHH-Hh
Q 004509 584 TAGAYKVAVANRKRPSILALS----RQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEEL-RK 658 (748)
Q Consensus 584 ~~~~l~~a~~~~~~P~~irl~----r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L-~~ 658 (748)
++++|..+++ .++|+++..| |+...+++..+ +.++++.+.+.++ |+|+|||+||..++.++|+|..- ++
T Consensus 191 akglllscir-dpnp~iffepk~lyr~a~edvp~~d-y~iplsqaevire----g~ditlv~wgtqvh~i~e~a~l~~ek 264 (362)
T KOG0525|consen 191 AKGLLLSCIR-DPNPCIFFEPKILYRQAVEDVPEGD-YMIPLSQAEVIRE----GSDITLVAWGTQVHVIMEQACLAKEK 264 (362)
T ss_pred hhceeeeecc-CCCceEEechHHHHHHhhhhCCCCC-ccccccHHHHhhc----CCceEEEEcchhhHHHHHHHHhhHHh
Confidence 9999999996 6999999865 56666666544 6799999999998 79999999999999999988754 45
Q ss_pred CCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCcchhhc------------CCc-cEEeeCcCCCCCC
Q 004509 659 GGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKG-KAIGIDRFGASAP 725 (748)
Q Consensus 659 ~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~v~------------~~~-~~ig~d~f~~~G~ 725 (748)
.|++++|||+.++-|||.+.++ ++|.|+|+ ++|++|...+.||+..+. +++ ...|+|..-++
T Consensus 265 ~giscevidlkti~pwd~d~v~--~sv~ktgr-llisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-- 339 (362)
T KOG0525|consen 265 LGISCEVIDLKTIIPWDKDTVE--ESVQKTGR-LLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-- 339 (362)
T ss_pred cCCceEEEeeecccCccHHHHH--HHHHhhce-EEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc--
Confidence 7999999999999999999886 79999996 469999999999876432 222 23566644332
Q ss_pred HHHHHHHhCCCHHHHHHHHHHh
Q 004509 726 AGKIYKEFGITAEAVITAAKEV 747 (748)
Q Consensus 726 ~~~l~~~~gl~~e~I~~~i~~l 747 (748)
...-.|-.+..+|.++|++.
T Consensus 340 --vfepfy~ptk~ki~daik~~ 359 (362)
T KOG0525|consen 340 --VFEPFYMPTKNKILDAIKKT 359 (362)
T ss_pred --cccccccCcHhHHHHHHHHh
Confidence 11225567888999998875
No 45
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.95 E-value=9.5e-27 Score=235.96 Aligned_cols=175 Identities=26% Similarity=0.407 Sum_probs=145.7
Q ss_pred CCCccHHHHHHHHHcCCC-------CCCHHHHh-hhhh---cCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHH
Q 004509 148 AGHGCMLQYALLHLAGYD-------SVQEDDLK-NFRQ---WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEK 216 (748)
Q Consensus 148 ~GH~~~~~Ya~~~l~G~~-------~~~~~~l~-~~r~---~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~ 216 (748)
.||+++++|+.++|.|.. ..+.+.|. .||+ .+| +++||+. ++||++.++|+||++++.|+|+|+.
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg-~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~d-- 77 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGG-IPSHAAP-ETPGSIHEGGELGYSLSHAYGAVFD-- 77 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCC-CCCCCcc-cCCCeeecccchhhHHHHHHHhhhc--
Confidence 599999999999999941 11222353 4566 455 8899996 7999999999999999999999852
Q ss_pred HhhhhcCCCCCCcCCcEEEEEEcchhcchhhH---HHHHHHHHHcCCCcEEEEEECCCCccccccccc--ccccHHHHHh
Q 004509 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIA---NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFE 291 (748)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~---~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~--~~~~~~~~~~ 291 (748)
+ .+.+|+|++||||++||.+ ||+.+++..+++++|+.|+++|+|+|++++... ..+++.++|+
T Consensus 78 -------~-----~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~ 145 (227)
T cd02011 78 -------N-----PDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFR 145 (227)
T ss_pred -------C-----CCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHH
Confidence 2 2779999999999999995 999999999999999999999999999999743 4689999999
Q ss_pred hCCcEEEEEccCCCCHHHHHHHHHHHHh-------------c----CCCCE--EEEEEeeeccCCCCC
Q 004509 292 GLGWHVIWVKNGNTGYDDIRAAIKEAKA-------------V----TDKPT--LIRVTTTIGFGSPNK 340 (748)
Q Consensus 292 a~G~~~~~v~dG~~D~~~l~~al~~a~~-------------~----~~~P~--vI~~~T~kg~G~~~~ 340 (748)
+|||+++.| ||| |++++.+++++|++ + ..+|. +|+++|.||+.-|..
T Consensus 146 ~yG~~~~~V-DG~-D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p~~ 211 (227)
T cd02011 146 GYGYEPYFV-EGD-DPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGPKE 211 (227)
T ss_pred hCCCceEEE-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCCcc
Confidence 999999999 999 99998888776543 1 12453 778999999987743
No 46
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.94 E-value=2.7e-25 Score=238.00 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=179.9
Q ss_pred CCCHHHHH--HHHHHHHHHHHHHHhhcCCCCCC----CCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHH
Q 004509 82 STDAALVE--KSVNTIRFLAVDAVEKANSGHPG----LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (748)
Q Consensus 82 ~~~~~~l~--~la~~iR~~~~~~~~~a~~GH~g----~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~ 155 (748)
.+..++++ +....+|.+=-++......|-++ ++.|- |...+.-...|+ + +.| +|++ .|.+
T Consensus 24 ~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~Gq-EA~~vg~~~aL~--~------~~D-~i~~-~YR~--- 89 (358)
T COG1071 24 LSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQ-EAVQVGAAAALR--P------GED-WIFP-TYRD--- 89 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccH-HHHHHHHHHhcC--C------CCC-Eeec-ccCc---
Confidence 34445444 34666777766666554445444 55552 222222222222 2 236 4555 5999
Q ss_pred HHHHHHcCCCCCCHHHHh--hhhhcCCCCCC--CCCC--CCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCc
Q 004509 156 YALLHLAGYDSVQEDDLK--NFRQWGSKTPG--HPEN--FETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEI 229 (748)
Q Consensus 156 Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~G--hp~~--~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~ 229 (748)
+++.+..|. +..++. -+.+..+.+.| .|.. +.-.++...+|++|+++|.|+|+|+|.|+++.
T Consensus 90 h~~~l~~G~---~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~--------- 157 (358)
T COG1071 90 HGHLLARGV---PLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGT--------- 157 (358)
T ss_pred cccceecCC---CHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCC---------
Confidence 777777884 777763 34455544444 2321 12235677899999999999999999998862
Q ss_pred CCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccc-cHHHHHhhCCcEEEEEccCCCCHH
Q 004509 230 VDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTE-NVDKRFEGLGWHVIWVKNGNTGYD 308 (748)
Q Consensus 230 ~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~-~~~~~~~a~G~~~~~v~dG~~D~~ 308 (748)
.++.++|++|||+.++|.+||+||+|+.|+| |+||+|+||+|+|+.+...+... .+..+..+||+..++| ||+ |+.
T Consensus 158 ~~~Va~~~~GDGat~qG~FhEalN~A~v~kl-Pvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~V-DG~-D~~ 234 (358)
T COG1071 158 KDGVAVAFFGDGATNQGDFHEALNFAAVWKL-PVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRV-DGN-DVL 234 (358)
T ss_pred CCcEEEEEecCCccccchHHHHHHHHHHhcC-CEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEE-CCc-CHH
Confidence 2459999999999999999999999999999 89999999999999776644444 4566999999999999 999 999
Q ss_pred HHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHH
Q 004509 309 DIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRK 361 (748)
Q Consensus 309 ~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~ 361 (748)
+++++.++|++ ..++|++||+.|+|..||+..+++.+| .+++|.+++++
T Consensus 235 avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~Y----RskeE~~~~~~ 286 (358)
T COG1071 235 AVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKY----RSKEEVEEWKK 286 (358)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCcccc----CCHHHHHHHhc
Confidence 99999999876 357999999999999999988766777 36777765543
No 47
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.94 E-value=4.3e-24 Score=232.37 Aligned_cols=228 Identities=20% Similarity=0.135 Sum_probs=167.4
Q ss_pred CCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHh--hhhhcCCCCCC-----CCCCCCCCccccccchhhHhHHHHHHHHH
Q 004509 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK--NFRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (748)
Q Consensus 141 rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~G-----hp~~~~~pgi~~~tG~lG~gl~~AvG~Al 213 (748)
.|. |+ ..|.+ +++....|. +.+++. -|.+..+.+.| |.... -.++....|++|+++|.|+|+|+
T Consensus 72 ~D~-~~-~~yR~---~~~~la~G~---~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~-~~~~~~~~g~lG~~lp~AvGaa~ 142 (341)
T CHL00149 72 TDY-VC-STYRD---HVHALSKGV---PPKNVMAELFGKETGCSRGRGGSMHIFSA-PHNFLGGFAFIGEGIPIALGAAF 142 (341)
T ss_pred CCE-EE-ccccc---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCCccccch-hcCccCCChhhhccHHHHHHHHH
Confidence 364 44 45999 677777884 677763 35566665544 55421 22344578999999999999999
Q ss_pred HHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc-cccccHHHHHhh
Q 004509 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEG 292 (748)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~-~~~~~~~~~~~a 292 (748)
|.++++..++.+ ..++.|+|++|||++++|.+||+|++|+.|+| |+++||.||+|+++.++.. ...+++.+++++
T Consensus 143 A~k~~~~~~~~~---~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-Pvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a 218 (341)
T CHL00149 143 QSIYRQQVLKEV---QPLRVTACFFGDGTTNNGQFFECLNMAVLWKL-PIIFVVENNQWAIGMAHHRSTSIPEIHKKAEA 218 (341)
T ss_pred HHHHhccccccC---CCCCEEEEEeCCchhhhcHHHHHHHHHhhcCC-CEEEEEEeCCeeeecchhheeCCccHHHHHHh
Confidence 998876432211 13788999999999999999999999999999 7999999999999887643 245789999999
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCC
Q 004509 293 LGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEP 369 (748)
Q Consensus 293 ~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~ 369 (748)
||+..++| ||+ |+.++++++++|.+ ..++|++|++.|+|.+||+..+ +..| .+++|++.+++ .||
T Consensus 219 ~G~~~~~V-dg~-d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D-~~~Y----R~~~e~~~~~~-----~DP 286 (341)
T CHL00149 219 FGLPGIEV-DGM-DVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLAD-PDEL----RSKQEKEAWVA-----RDP 286 (341)
T ss_pred CCCCEEEE-eCC-CHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCC-CccC----CCHHHHHHHhc-----CCH
Confidence 99999999 999 99887766655543 2578999999999999999764 3333 46777766543 344
Q ss_pred CCCchhHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 004509 370 FHVPEDVKKHWSR-HVAEGATLEAEWNAKFAE 400 (748)
Q Consensus 370 ~~v~~e~~~~~~~-~~~~g~~~~~~~~~~~~~ 400 (748)
+..|++ ++++|...+.++.+...+
T Consensus 287 -------i~~~~~~L~~~g~~~~~~~~~i~~e 311 (341)
T CHL00149 287 -------IKKLKSYIIDNELASQKELNKIQRE 311 (341)
T ss_pred -------HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345655 556675555555544443
No 48
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.93 E-value=2.5e-24 Score=230.75 Aligned_cols=223 Identities=26% Similarity=0.306 Sum_probs=161.7
Q ss_pred CeEEEeCCCccHHHHHHHHHcCCCCCCHHHHh--hhhhcCCCCCC-CCCCCCC--CccccccchhhHhHHHHHHHHHHHH
Q 004509 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK--NFRQWGSKTPG-HPENFET--PGIEVTTGPLGQGMANAVGLALAEK 216 (748)
Q Consensus 142 Dr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~G-hp~~~~~--pgi~~~tG~lG~gl~~AvG~AlA~~ 216 (748)
| +|++. |.+ .++....|. +.+++. -+.+..+...| ||-.... .++...++++|..+|.|+|+|+|.|
T Consensus 47 D-~v~~~-yR~---~~~~la~g~---~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k 118 (300)
T PF00676_consen 47 D-WVFPY-YRD---HGHALARGI---DLEEIFAELLGKAKGHGGGRHPLHFSDKGLNILGASSPVGAQVPIAAGVALAIK 118 (300)
T ss_dssp S-EEEEC-STT---HHHHHHTTT----HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHH
T ss_pred C-EEEec-ccc---hhhhhhccc---cccchhHHhcCcccCCCCCccccccccccceeeeccccccccCccccchhHhhh
Confidence 6 45554 999 555555783 676652 24444444333 3111112 2467789999999999999999999
Q ss_pred HhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc-cccccHHHHHhhCCc
Q 004509 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGW 295 (748)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~-~~~~~~~~~~~a~G~ 295 (748)
+.+ .+..++|++|||+.++|.++|+||+|+.|+| |+||||+||+|+|+++... ....++.+++++||+
T Consensus 119 ~~~----------~~~v~v~~~GDga~~qG~~~EalN~A~~~~l-PvifvveNN~~aist~~~~~~~~~~~~~~a~~~gi 187 (300)
T PF00676_consen 119 YRG----------KDGVVVCFFGDGATSQGDFHEALNLAALWKL-PVIFVVENNQYAISTPTEEQTASPDIADRAKGYGI 187 (300)
T ss_dssp HTT----------SSEEEEEEEETGGGGSHHHHHHHHHHHHTTT-SEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTS
T ss_pred hcC----------CceeEEEEecCcccccCccHHHHHHHhhccC-CeEEEEecCCcccccCccccccccchhhhhhccCC
Confidence 776 3789999999999999999999999999999 8999999999999998864 445678999999999
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCC
Q 004509 296 HVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHV 372 (748)
Q Consensus 296 ~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v 372 (748)
+.+.| ||+ |+.++++++++|++ ..++|+||++.|+|-.||+..+++..| .+++|++...+. .||
T Consensus 188 p~~~V-DG~-D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y----r~~~e~~~~~~~----~DP--- 254 (300)
T PF00676_consen 188 PGIRV-DGN-DVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY----RSPEEYEEWWKK----RDP--- 254 (300)
T ss_dssp EEEEE-ETT-SHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT----SHHHHHHHHHHC----T-H---
T ss_pred cEEEE-CCE-eHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc----CCHHHHHHHHhc----CcH---
Confidence 99999 999 99999999999876 357999999999999999988655554 346666655442 233
Q ss_pred chhHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 004509 373 PEDVKKHWSR-HVAEGATLEAEWNAKFAE 400 (748)
Q Consensus 373 ~~e~~~~~~~-~~~~g~~~~~~~~~~~~~ 400 (748)
+..|++ +++.|...++++.+...+
T Consensus 255 ----i~~~~~~L~~~g~~t~~~~~~i~~e 279 (300)
T PF00676_consen 255 ----IKRFRRYLIEEGVLTEEELDAIEAE 279 (300)
T ss_dssp ----HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456665 556666555555544443
No 49
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.93 E-value=4.4e-24 Score=228.79 Aligned_cols=219 Identities=24% Similarity=0.224 Sum_probs=168.0
Q ss_pred CCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHh--hhhhcCCCCCC-----CCCCCCCCccccccchhhHhHHHHHHHHH
Q 004509 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK--NFRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (748)
Q Consensus 141 rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~G-----hp~~~~~pgi~~~tG~lG~gl~~AvG~Al 213 (748)
.| +|++ .|++ +++...+|. +..++. -+.+..+.+.| |... ..+++...+|++|+++|.|+|+|+
T Consensus 48 ~D-~~~~-~yR~---~~~~la~G~---~~~~~~~e~~g~~~g~~~G~~g~~h~~~-~~~~~~~~~g~lG~~~p~a~G~a~ 118 (293)
T cd02000 48 GD-WVFP-TYRD---HGHALARGV---DLKEMLAELFGKETGPCKGRGGSMHIGD-KEKNFFGGNGIVGGQVPLAAGAAL 118 (293)
T ss_pred CC-EEEe-cchh---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCCCCCCc-hhcCccccccccccchhHHHHHHH
Confidence 37 4555 7999 777777895 677763 24444444332 5542 457888999999999999999999
Q ss_pred HHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc-ccccHHHHHhh
Q 004509 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEG 292 (748)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~-~~~~~~~~~~a 292 (748)
|.++.+ .+++|+|++|||++++|.+||+|++|+.++| |+++||+||+|+++.+.+.. ..+++.+++++
T Consensus 119 a~k~~~----------~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~l-Pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 187 (293)
T cd02000 119 ALKYRG----------EDRVAVCFFGDGATNEGDFHEALNFAALWKL-PVIFVCENNGYAISTPTSRQTAGTSIADRAAA 187 (293)
T ss_pred HHHHhC----------CCCEEEEEeCCCccccchHHHHHHHHHhhCC-CEEEEEeeCCeeccCCHHHHhCCccHHHHHHh
Confidence 998764 3789999999999999999999999999999 79999999999998876533 35789999999
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCC
Q 004509 293 LGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEP 369 (748)
Q Consensus 293 ~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~ 369 (748)
||++++.| ||+ |++++++++++|.+ ..++|++|++.|.+.+||+..+++..| .+++|++..++ .||
T Consensus 188 ~G~~~~~V-dg~-d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Y----r~~~e~~~~~~-----~dp 256 (293)
T cd02000 188 YGIPGIRV-DGN-DVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRY----RTKEEVEEWKK-----RDP 256 (293)
T ss_pred CCCCEEEE-CCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccC----CCHHHHHHHhc-----CCH
Confidence 99999999 999 99999998888764 257899999999999999976555443 45666664332 343
Q ss_pred CCCchhHHHHHHH-HHhhhhhhHHHHHHH
Q 004509 370 FHVPEDVKKHWSR-HVAEGATLEAEWNAK 397 (748)
Q Consensus 370 ~~v~~e~~~~~~~-~~~~g~~~~~~~~~~ 397 (748)
+..|++ ++.+|...++++.+.
T Consensus 257 -------i~~~~~~L~~~g~~~~~~~~~~ 278 (293)
T cd02000 257 -------ILRLRKYLIEAGILTEEELAAI 278 (293)
T ss_pred -------HHHHHHHHHHCCCCCHHHHHHH
Confidence 345655 556665555555443
No 50
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.93 E-value=1.2e-23 Score=233.65 Aligned_cols=224 Identities=20% Similarity=0.164 Sum_probs=161.6
Q ss_pred CeEEEeCCCccHHHHHHHHHcCCCCCCHHHHh--hhhhcCCCCCC-----CCCCCCCCccccccchhhHhHHHHHHHHHH
Q 004509 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK--NFRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLALA 214 (748)
Q Consensus 142 Dr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~G-----hp~~~~~pgi~~~tG~lG~gl~~AvG~AlA 214 (748)
| +|++ .|.. +++....|. +.+++. -|.+..+.+.| |... .-.++....|++|+++|.|+|+|+|
T Consensus 139 D-~v~~-~yR~---h~~~La~G~---~~~~~mael~Gk~~g~~~GrggsmH~~~-~~~~~~g~~g~lG~~lP~AvGaA~A 209 (433)
T PLN02374 139 D-SVVS-TYRD---HVHALSKGV---PARAVMSELFGKATGCCRGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFS 209 (433)
T ss_pred C-EEEc-cCcC---hHHhhhcCC---CHHHHHHHHcCCCCCCCCCCCCcCccCc-hhhCCCCCceeccCchhHHHHHHHH
Confidence 6 4566 6999 566666784 777763 24444443222 3321 1235556789999999999999999
Q ss_pred HHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc-ccccHHHHHhhC
Q 004509 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGL 293 (748)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~-~~~~~~~~~~a~ 293 (748)
.|+++..++.. ..++.|+|++|||++++|.+||+|++|+.|+| |+++||+||+|+|+.+.... ..+++.+++++|
T Consensus 210 ~k~~~~~~~~~---~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~L-PvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~ 285 (433)
T PLN02374 210 SKYRREVLKEE---SCDDVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNLWAIGMSHLRATSDPEIWKKGPAF 285 (433)
T ss_pred HHHhhcccccc---CCCCEEEEEECCCccccChHHHHHHHHHHhCC-CEEEEEeCCCEeecceeeeccCCCCHHHHHHhc
Confidence 99876433221 13789999999999999999999999999999 69999999999988765433 356899999999
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCC
Q 004509 294 GWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPF 370 (748)
Q Consensus 294 G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~ 370 (748)
||+++.| ||+ |+.++++++++|.+ ..++|++|++.|+|.+||+..+ ...| .+++|++.+++ .||+
T Consensus 286 G~~~~~V-DG~-D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D-~~~Y----R~~~e~~~~~~-----~DPi 353 (433)
T PLN02374 286 GMPGVHV-DGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PDEL----RDPAEKAHYAA-----RDPI 353 (433)
T ss_pred CCcEEEE-CCC-CHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCC-cccc----CCHHHHHHHHc-----CCcH
Confidence 9999999 999 99988866665544 2579999999999999999764 3333 45667665442 3442
Q ss_pred CCchhHHHHHHH-HHhhhhhhHHHHHHH
Q 004509 371 HVPEDVKKHWSR-HVAEGATLEAEWNAK 397 (748)
Q Consensus 371 ~v~~e~~~~~~~-~~~~g~~~~~~~~~~ 397 (748)
..|++ ++++|...+.++.+.
T Consensus 354 -------~~~~~~L~~~gi~te~e~~~i 374 (433)
T PLN02374 354 -------AALKKYLIENGLATEAELKAI 374 (433)
T ss_pred -------HHHHHHHHHcCCCCHHHHHHH
Confidence 34554 455665444444443
No 51
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.92 E-value=2.7e-23 Score=226.86 Aligned_cols=217 Identities=19% Similarity=0.179 Sum_probs=160.0
Q ss_pred CCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHh--hhhhcCCCCCC-----CCCCCCCCccccccchhhHhHHHHHHHHH
Q 004509 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK--NFRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (748)
Q Consensus 141 rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~G-----hp~~~~~pgi~~~tG~lG~gl~~AvG~Al 213 (748)
.| +|++ .|.. +++.+..|. +..++. -|.+..+.+.| |... ...++...++++|+++|.|+|+|+
T Consensus 82 ~D-~~~~-~yR~---hg~~la~G~---~~~~~~ae~~g~~~g~~~GrggsmH~~~-~~~~~~~~~~~vG~~~p~A~G~A~ 152 (362)
T PLN02269 82 ED-AIIT-AYRD---HCTHLGRGG---TVLEVFAELMGRKDGCSRGKGGSMHFYK-KDANFYGGHGIVGAQVPLGAGLAF 152 (362)
T ss_pred CC-EEEe-chhh---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCcccccc-hhcCccccCchhhccccHHHHHHH
Confidence 36 4555 5999 777777894 677763 34454444433 3321 234566789999999999999999
Q ss_pred HHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc-ccccHHHHHhh
Q 004509 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEG 292 (748)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~-~~~~~~~~~~a 292 (748)
|.|+++ .+.+++|++|||+++||.+||+||+|+.|+| |+++||+||+|++++++... ...++.+ ++
T Consensus 153 A~k~~~----------~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~l-PvvfvveNN~~aist~~~~~~~~~~~~~--~~ 219 (362)
T PLN02269 153 AQKYNK----------EENVAFALYGDGAANQGQLFEALNIAALWDL-PVIFVCENNHYGMGTAEWRAAKSPAYYK--RG 219 (362)
T ss_pred HHHHhC----------CCCeEEEEECCCCcccCHHHHHHHHhhccCc-CEEEEEeCCCEeccCchhhhccchHHHH--hh
Confidence 999875 3789999999999999999999999999999 79999999999999876543 2344543 34
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHHh--cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCC
Q 004509 293 LGWHVIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPF 370 (748)
Q Consensus 293 ~G~~~~~v~dG~~D~~~l~~al~~a~~--~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~ 370 (748)
++++.++| ||| |+.++++++++|.+ +.++|++|++.|+|.+||+..++...| .+++|++.+++. .||
T Consensus 220 ~~~p~~~V-DG~-D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~gHs~~D~~~~Y----R~~~E~~~~~~~----~DP- 288 (362)
T PLN02269 220 DYVPGLKV-DGM-DVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSDPGSTY----RTRDEISGVRQE----RDP- 288 (362)
T ss_pred cCCCeEEE-CCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCcCCCcCCCCCCccc----CCHHHHHHHHhC----CCH-
Confidence 57888998 999 99999999998865 127899999999999999876533233 467787765432 344
Q ss_pred CCchhHHHHHHH-HHhhhhhhHHHHHH
Q 004509 371 HVPEDVKKHWSR-HVAEGATLEAEWNA 396 (748)
Q Consensus 371 ~v~~e~~~~~~~-~~~~g~~~~~~~~~ 396 (748)
+..|++ ++++|...+.++.+
T Consensus 289 ------i~~~~~~L~~~g~~te~e~~~ 309 (362)
T PLN02269 289 ------IERVRKLLLAHELATEAELKD 309 (362)
T ss_pred ------HHHHHHHHHHcCCCCHHHHHH
Confidence 345655 45556544444433
No 52
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.92 E-value=7e-23 Score=221.20 Aligned_cols=216 Identities=22% Similarity=0.228 Sum_probs=164.2
Q ss_pred CCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHh--hhhhcCCCCCC-----CCCCCCCCccccccchhhHhHHHHHHHHH
Q 004509 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK--NFRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (748)
Q Consensus 141 rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~G-----hp~~~~~pgi~~~tG~lG~gl~~AvG~Al 213 (748)
.| +|++ .|.. +++....|. +.+++. -+.+..+.+.| |... .-.++....|+||+++|.|+|+|+
T Consensus 54 ~D-~~~~-~yR~---~~~~la~G~---~~~~~~~~~~g~~~g~~~Gr~g~~h~~~-~~~~~~~~~g~~G~~lp~AiGaa~ 124 (315)
T TIGR03182 54 DD-YVIT-SYRD---HGHALARGV---PPKEVMAELTGRATGCSKGKGGSMHMFD-REKNFYGGHGIVGAQVPLATGLAF 124 (315)
T ss_pred CC-EEEe-chhh---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCCCCcCc-hhhCcccCcCcccccccHHHHHHH
Confidence 36 5555 5999 667777884 677763 34455554444 4432 234566788999999999999999
Q ss_pred HHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc-cccccHHHHHhh
Q 004509 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEG 292 (748)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~-~~~~~~~~~~~a 292 (748)
|.++.+ .+++|+|++|||++++|.+||+|++|+.++| |+++||.||+|+++++++. ....++.+++++
T Consensus 125 A~~~~~----------~~~~vv~~~GDGa~~~g~~~ealn~A~~~~l-Pvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a 193 (315)
T TIGR03182 125 ANKYRG----------NDNVTACFFGDGAANQGQFYESFNMAALWKL-PVIFVIENNLYAMGTSVERSSSVTDLYKRGES 193 (315)
T ss_pred HHHHhC----------CCCEEEEEeCCCcccccHHHHHHHHhhccCc-CEEEEEEcCCccccCCHHHHhCCcCHHHHHHh
Confidence 998764 3789999999999999999999999999999 6889999999999987653 345789999999
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCC
Q 004509 293 LGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEP 369 (748)
Q Consensus 293 ~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~ 369 (748)
||++++.| ||+ |+.++++++++|.+ ..++|++|++.|+|..||+..+ ...| .+++|++..++ .||
T Consensus 194 ~G~~~~~V-dg~-d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D-~~~Y----r~~~e~~~~~~-----~dP 261 (315)
T TIGR03182 194 FGIPGERV-DGM-DVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSD-PAKY----RSKEEVEEWRK-----RDP 261 (315)
T ss_pred CCCCEEEE-CCC-CHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCC-cccc----CCHHHHHHHHh-----cCH
Confidence 99999999 999 99999888888765 2579999999999999999764 3333 46777776553 344
Q ss_pred CCCchhHHHHHHH-HHhhhhhhHHHHH
Q 004509 370 FHVPEDVKKHWSR-HVAEGATLEAEWN 395 (748)
Q Consensus 370 ~~v~~e~~~~~~~-~~~~g~~~~~~~~ 395 (748)
+ ..|++ ++++|...+.++.
T Consensus 262 i-------~~~~~~L~~~g~~~~~~~~ 281 (315)
T TIGR03182 262 I-------EKLKARLIEQGIASEEELK 281 (315)
T ss_pred H-------HHHHHHHHHCCCCCHHHHH
Confidence 2 45555 4556644444433
No 53
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.91 E-value=3.1e-22 Score=218.33 Aligned_cols=216 Identities=22% Similarity=0.189 Sum_probs=159.7
Q ss_pred CCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhh
Q 004509 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAA 220 (748)
Q Consensus 141 rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~ 220 (748)
.|. |++ .|.+ +++....|. +..++.. +..+...|-.. ..-.++...++++|.++|.|+|+|++.|+.+
T Consensus 75 ~D~-~~~-~yR~---h~~~l~~G~---~~~~~~a--e~~g~~~g~~~-~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~- 142 (341)
T TIGR03181 75 DDW-VFP-SYRD---HAAMLARGV---PLVEILL--YWRGDERGSWD-PEGVNILPPNIPIGTQYLHAAGVAYALKLRG- 142 (341)
T ss_pred CCE-EEc-chhh---HHHHHHcCC---CHHHHHH--HhcCcCcCCCC-chhcCccCCCchHhcchhHHHhHHHHHHhhC-
Confidence 474 444 5999 777777895 6777532 22333333211 1234566788999999999999999998764
Q ss_pred hcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc-cccccHHHHHhhCCcEEEE
Q 004509 221 RYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGWHVIW 299 (748)
Q Consensus 221 ~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~-~~~~~~~~~~~a~G~~~~~ 299 (748)
.+++|+|++|||++++|.+||+|++|++++| |+++||.||+|+++.+... ....++.+++++|||+++.
T Consensus 143 ---------~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~L-Pvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 212 (341)
T TIGR03181 143 ---------EDNVAVTYFGDGGTSEGDFYEALNFAGVFKA-PVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQ 212 (341)
T ss_pred ---------CCCEEEEEecCCccccChHHHHHHHHhccCC-CEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEE
Confidence 3789999999999999999999999999999 6999999999998876543 3457899999999999999
Q ss_pred EccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhH
Q 004509 300 VKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDV 376 (748)
Q Consensus 300 v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~ 376 (748)
| ||+ |..++++++++|.+ ..++|++|++.|+|.+||+..+++..| .+++|++.+++ .||
T Consensus 213 V-dg~-d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~Y----R~~~e~~~~~~-----~Dp------- 274 (341)
T TIGR03181 213 V-DGN-DVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRY----RTKEEEEEWRK-----KDP------- 274 (341)
T ss_pred E-CCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccC----CCHHHHHHHhc-----CCH-------
Confidence 9 999 99877777666544 257999999999999999987544444 45666665443 344
Q ss_pred HHHHHH-HHhhhhhhHHHHHH
Q 004509 377 KKHWSR-HVAEGATLEAEWNA 396 (748)
Q Consensus 377 ~~~~~~-~~~~g~~~~~~~~~ 396 (748)
+..|++ ++++|...+.++.+
T Consensus 275 i~~~~~~L~~~g~~~~~e~~~ 295 (341)
T TIGR03181 275 ILRLRKYLERKGLWDEEQEEA 295 (341)
T ss_pred HHHHHHHHHHCCCCCHHHHHH
Confidence 345555 45566544444443
No 54
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.81 E-value=4e-19 Score=183.71 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=148.2
Q ss_pred CCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHh--hhhhcCCCCCCCC-CC-CCCCccccccchhhHhHHHHHHHHHHHH
Q 004509 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK--NFRQWGSKTPGHP-EN-FETPGIEVTTGPLGQGMANAVGLALAEK 216 (748)
Q Consensus 141 rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~--~~r~~~s~~~Ghp-~~-~~~pgi~~~tG~lG~gl~~AvG~AlA~~ 216 (748)
.|-+|.+ ..| +.+.+++|. +..++. -+.+..|.+.|-- +. --.+....+.|.+|.++|.+.|+|+|+|
T Consensus 111 ~D~iIts--YR~---Hg~~~~~G~---S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k~FyGGnGIVGAQiPLGaGia~A~k 182 (394)
T KOG0225|consen 111 SDSIITS--YRC---HGWTYLRGV---SVREVLAELMGRQAGCSKGKGGSMHMYAKNFYGGNGIVGAQIPLGAGIAFAQK 182 (394)
T ss_pred CCceEEE--eee---eeEEeecCc---cHHHHHHHHhccccccccCCCcceeeecccccCccceeccCCCccccHHHHHH
Confidence 4766633 566 555667773 454432 2333333333310 01 1244566789999999999999999999
Q ss_pred HhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc-cccccHHHHHhhCCc
Q 004509 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGW 295 (748)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~-~~~~~~~~~~~a~G~ 295 (748)
+++ .+..++++-|||+.++|++||++|+|..|+| |+||||+||+|++.+.... +..+++.++- .| +
T Consensus 183 Y~~----------~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~L-P~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-i 249 (394)
T KOG0225|consen 183 YNR----------EDAVCFALYGDGAANQGQVFEAFNMAALWKL-PVIFVCENNHYGMGTSAERASASTEYYKRG-DY-I 249 (394)
T ss_pred hcc----------CCceEEEEeccccccchhHHHHhhHHHHhCC-CEEEEEccCCCccCcchhhhhcChHHHhcc-CC-C
Confidence 875 3788999999999999999999999999999 8999999999999887653 3455666665 34 8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCC
Q 004509 296 HVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPF 370 (748)
Q Consensus 296 ~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~ 370 (748)
+.++| ||. |+.++++|.+.|++ +.++|.++|+.|+|-.||+.++.-..| .+.||+...+. .+||+
T Consensus 250 PGl~V-dGm-dvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sY----RtReEiq~vR~----kRDPI 317 (394)
T KOG0225|consen 250 PGLKV-DGM-DVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSY----RTREEIQEVRQ----KRDPI 317 (394)
T ss_pred CceEE-CCc-chhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCccc----chHHHHHHHHh----ccChH
Confidence 88998 999 99999999999987 358999999999999999976421222 35677776665 25664
No 55
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.80 E-value=1.3e-18 Score=181.06 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=119.9
Q ss_pred ccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc-chhhHHHHHHHHHHcCCC--cEEEEEECCC
Q 004509 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNH 271 (748)
Q Consensus 195 ~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~Eal~~A~~~~L~--~li~Ivd~N~ 271 (748)
....+++|..+|.|+|+|+|.++++. +.+..+..++|++|||++ .+|.++|+||+|..|+|+ ++|+||+||+
T Consensus 109 ~~npS~l~~~~pva~G~A~A~k~~~~-----~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq 183 (265)
T cd02016 109 APNPSHLEAVNPVVMGKTRAKQDYRG-----DGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQ 183 (265)
T ss_pred cCCCcccccccCeehhHHHHHHHhcC-----CccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC
Confidence 34567899999999999999998752 001125788999999996 699999999999999995 4999999999
Q ss_pred Cccccccccc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCC
Q 004509 272 ISIDGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKA 341 (748)
Q Consensus 272 ~~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~ 341 (748)
|+++++.+.. ....+.+++++||++++.| ||+ |++++++++++|.+ ..++|++|++.|+|-+||...+
T Consensus 184 ~g~sT~~~~~~~~~~~~~~a~~~gip~~~V-dG~-D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D 255 (265)
T cd02016 184 IGFTTDPRDSRSSPYCTDVAKMIGAPIFHV-NGD-DPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELD 255 (265)
T ss_pred EEEEecHHHhcccccHHHHHeecCCCEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcC
Confidence 9999987643 4567899999999999999 999 99999999998876 3579999999999999998664
No 56
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.77 E-value=2.3e-18 Score=182.09 Aligned_cols=220 Identities=27% Similarity=0.391 Sum_probs=138.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhchhcCCCCCCCCCCC-eEEEeCCCccHHHHHHHHHcCCC-------CCCHHHHhh-hhh
Q 004509 107 NSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRD-RFVLSAGHGCMLQYALLHLAGYD-------SVQEDDLKN-FRQ 177 (748)
Q Consensus 107 ~~GH~g~~ls~~~i~~~L~~~~l~~~~~~p~~~~rD-r~I~s~GH~~~~~Ya~~~l~G~~-------~~~~~~l~~-~r~ 177 (748)
--||+|++.+..=+.+.|-+..=++| .| .+|...||+.|++.|..+|.|-+ +.+.+.|.. ||+
T Consensus 46 llGHWGt~PGlnfiyahlNrlI~~~~--------~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~ 117 (379)
T PF09364_consen 46 LLGHWGTSPGLNFIYAHLNRLIRKYD--------LDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQ 117 (379)
T ss_dssp --S-TTTHHHHHHHHHHHHHHHHHHT--------B-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHhcC--------CceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHh
Confidence 38999999988766665544432333 34 48899999999999999999932 234555644 444
Q ss_pred cCCCCCC---CCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH---HHH
Q 004509 178 WGSKTPG---HPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA---NEA 251 (748)
Q Consensus 178 ~~s~~~G---hp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~---~Ea 251 (748)
+ |...| |..+ ++||.....|-||++++.|.|+++-.+ |-.|+|++||||..+|.. |-+
T Consensus 118 F-S~PgGipSH~~p-~tPGsIhEGGELGYaLshA~GA~~DnP--------------dliv~~vvGDGEaETGplA~sWh~ 181 (379)
T PF09364_consen 118 F-SFPGGIPSHVSP-ETPGSIHEGGELGYALSHAFGAVFDNP--------------DLIVACVVGDGEAETGPLAASWHS 181 (379)
T ss_dssp B-TSTTSB-SSS-T-TSTT-S---SSTS-HHHHHHHHHTT-T--------------T-EEEEEEETTGGGSHHHHHHGGG
T ss_pred C-CCCCCCccccCc-CCCCccCcCcchhhHHHHHhhcccCCC--------------CeEEEEEecCCcccCCcccccccc
Confidence 4 43334 5554 799999999999999999999998554 789999999999999842 222
Q ss_pred HHHHHHcCCCcEEEEEECCCCccccccc--ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh----------
Q 004509 252 SSLAGHLGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---------- 319 (748)
Q Consensus 252 l~~A~~~~L~~li~Ivd~N~~~i~~~~~--~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---------- 319 (748)
-.+.---.-..++-|+.-|+|.|+.+|- ....+++.+.|+++||+.+.| +|. |++++...+..+.+
T Consensus 182 ~kflnP~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~V-eg~-dp~~~h~~ma~ald~a~~~I~~iq 259 (379)
T PF09364_consen 182 NKFLNPATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFV-EGD-DPADMHQAMAAALDWALEEIRAIQ 259 (379)
T ss_dssp GGSS-TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEE-E----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeCcccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEE-ecC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111123589999999999999984 344677999999999999999 998 98776554432211
Q ss_pred ---cC----CCCE--EEEEEeeeccCCCCC------CCCccccCCcCc
Q 004509 320 ---VT----DKPT--LIRVTTTIGFGSPNK------ANSYSVHGSALG 352 (748)
Q Consensus 320 ---~~----~~P~--vI~~~T~kg~G~~~~------~~~~~~H~~~~~ 352 (748)
+. .+|. +|+++|.||++.|.. +++...|..|+.
T Consensus 260 ~~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEGt~raHQVPl~ 307 (379)
T PF09364_consen 260 KAARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEGTFRAHQVPLP 307 (379)
T ss_dssp HHHTT--SS----EEEEEEE--TTTTS-SEETTEE-TTSGGGSS-SST
T ss_pred HHHHcCCCCCCCCCcEEEEECCcccCCccccCCccccCcceeeecccc
Confidence 11 2343 788999999998864 467788888764
No 57
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.72 E-value=5.4e-17 Score=159.32 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=98.4
Q ss_pred ccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcc
Q 004509 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (748)
Q Consensus 195 ~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i 274 (748)
....|+||+++|.|+|++++.+ +++|+|++|||+++ +.++++++|.+++++.+++|+||+.+.+
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~~--------------~~~vv~~~GDG~~~--~~~~~l~ta~~~~~~~~~iv~nN~~~~~ 105 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAAP--------------DRPVVCIAGDGGFM--MTGQELATAVRYGLPVIVVVFNNGGYGT 105 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhCC--------------CCcEEEEEcCcHHh--ccHHHHHHHHHcCCCcEEEEEECCccHH
Confidence 3467999999999999999875 67899999999999 4789999999999977777777777776
Q ss_pred cccc-----------cccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 275 DGDT-----------EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 275 ~~~~-----------~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
.+.. ......|+.+++++|||++++| ++++++.++++++.+ .++|++|+++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v----~~~~~l~~a~~~a~~-~~~p~~i~v~~ 168 (168)
T cd00568 106 IRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRV----EDPEDLEAALAEALA-AGGPALIEVKT 168 (168)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 5432 1123468999999999999999 378999999999987 78999999986
No 58
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.70 E-value=4.2e-17 Score=167.02 Aligned_cols=150 Identities=25% Similarity=0.284 Sum_probs=124.3
Q ss_pred CCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEE
Q 004509 185 HPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLI 264 (748)
Q Consensus 185 hp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li 264 (748)
|-...+..++ .-+.++.++||.|+|.|.|.|+... .+..+||++|||+..||.++.++|+|+..+. |+|
T Consensus 180 HyGs~elnf~-tissplatqlpqAvGaaYa~k~~~~---------nnac~V~yfGdG~aSEGD~HA~~NfAAtle~-Pvi 248 (432)
T KOG1182|consen 180 HYGSKELNFV-TISSPLATQLPQAVGAAYALKMRKK---------NNACAVTYFGDGAASEGDAHAAFNFAATLEC-PVI 248 (432)
T ss_pred ccCccccceE-Eecchhhhccchhhhhhhhhhhccc---------CCeEEEEEecCCcccccchhhhhhHHHHhCC-CEE
Confidence 3333344443 3457899999999999999997652 3678999999999999999999999999997 899
Q ss_pred EEEECCCCcccccccccc-cccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCC
Q 004509 265 AFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNK 340 (748)
Q Consensus 265 ~Ivd~N~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~ 340 (748)
|||-||+|+|+++++..+ .+-++-+-.+||+..++| ||| |..+++.|.++|++ ..++|++||+.|+|---|+..
T Consensus 249 f~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRV-DGn-D~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTS 326 (432)
T KOG1182|consen 249 FFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRV-DGN-DALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTS 326 (432)
T ss_pred EEEcCCCeeeccccHHHhcCCceEEeccccceEEEEe-cCc-chHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCC
Confidence 999999999999997554 345677788999999999 999 99999999999977 247999999999987556666
Q ss_pred CCCcccc
Q 004509 341 ANSYSVH 347 (748)
Q Consensus 341 ~~~~~~H 347 (748)
+|+.+|.
T Consensus 327 DDSt~YR 333 (432)
T KOG1182|consen 327 DDSTAYR 333 (432)
T ss_pred Ccccccc
Confidence 6666653
No 59
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.68 E-value=1.7e-16 Score=157.06 Aligned_cols=114 Identities=26% Similarity=0.275 Sum_probs=99.8
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|++++.+ +++|||++|||+++ +.+++|.+|++++|+.+++|+|||+|++..
T Consensus 46 ~~g~mG~~lp~AiGa~la~~--------------~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~ 109 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP--------------DKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGL 109 (172)
T ss_pred CCCcccchHHHHHHHHHhCC--------------CCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccch
Confidence 45889999999999999875 78899999999999 778999999999999899999999998865
Q ss_pred cccc------------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 277 DTEI------------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 277 ~~~~------------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
..+. ....|+.+++++||+++.+| ++++++.++++++.+ .++|++|++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~liev~i 171 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELV----TTPEELKPALKRALA-SGKPALINVII 171 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHH-cCCCEEEEEEc
Confidence 4321 12468999999999999999 389999999999987 68999999986
No 60
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.67 E-value=2.4e-16 Score=156.97 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=101.1
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH-HHHHHHHHHcCCCcEEEEEECCCCccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA-NEASSLAGHLGLGKLIAFYDDNHISID 275 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~-~Eal~~A~~~~L~~li~Ivd~N~~~i~ 275 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+++ +. +++|.+|.+++++.+++|+|||.|++.
T Consensus 49 ~~g~mG~gl~~AiGa~la~p--------------~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~ 112 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE--------------DKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMT 112 (178)
T ss_pred ccccCccHHHHHhhHHhhCC--------------CCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceecc
Confidence 46899999999999999975 67899999999998 55 899999999999999999999998765
Q ss_pred ccccc----------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 276 GDTEI----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 276 ~~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
+..+. ....|+.+++++|||++.+|.+++ |++++.+++++|.+ .++|++|+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~-~l~~~~~al~~a~~-~~gp~lI~v~~ 176 (178)
T cd02008 113 GGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPY-DLKAIREELKEALA-VPGVSVIIAKR 176 (178)
T ss_pred CCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCcc-CHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 53221 123689999999999999997887 89888899999987 78999999975
No 61
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.64 E-value=8.7e-16 Score=156.40 Aligned_cols=119 Identities=24% Similarity=0.356 Sum_probs=101.8
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+|+ +...+|.+|.+++|+.+++|+|||+|++..
T Consensus 46 ~~gsmG~~lpaAiGa~la~p--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 109 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP--------------DREVYVLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHGFGCIN 109 (205)
T ss_pred CcchhhhHHHHHHHHHHhCC--------------CCeEEEEEccchhh--ccHHHHHHHHHcCCCCEEEEEECCccHHHH
Confidence 56899999999999999865 77899999999999 566789999999999999999999998643
Q ss_pred ccc-----------c-------------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 277 DTE-----------I-------------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~-----------~-------------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
..+ . ....|+.+++++||+++.+| +++++|.+|++++.+ .++|++|++.|.
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v----~~~~el~~al~~a~~-~~gp~lIeV~v~ 184 (205)
T cd02003 110 NLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV----KTIEELKAALAKAKA-SDRTTVIVIKTD 184 (205)
T ss_pred HHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEee
Confidence 211 0 12368999999999999999 499999999999987 789999999998
Q ss_pred eccC
Q 004509 333 IGFG 336 (748)
Q Consensus 333 kg~G 336 (748)
+...
T Consensus 185 ~~~~ 188 (205)
T cd02003 185 PKSM 188 (205)
T ss_pred cccc
Confidence 7543
No 62
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.64 E-value=1.4e-15 Score=152.60 Aligned_cols=121 Identities=24% Similarity=0.352 Sum_probs=100.7
Q ss_pred cccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCC-cEEEEEECCCCcc
Q 004509 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG-KLIAFYDDNHISI 274 (748)
Q Consensus 196 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~-~li~Ivd~N~~~i 274 (748)
+++|+||+++|.|+|+++|.+ +++|+|++|||+++ +.+++|.++++++++ .+++|+||++|++
T Consensus 45 ~~~g~mG~~lpaAiGaala~p--------------~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~ 108 (188)
T cd03371 45 LTVGSMGHASQIALGIALARP--------------DRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDS 108 (188)
T ss_pred eecCccccHHHHHHHHHHhCC--------------CCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhc
Confidence 345999999999999999975 67899999999999 888999999999975 4677777777876
Q ss_pred ccccc-ccccccHHHHHhhCCcEE-EEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCC
Q 004509 275 DGDTE-IAFTENVDKRFEGLGWHV-IWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGS 337 (748)
Q Consensus 275 ~~~~~-~~~~~~~~~~~~a~G~~~-~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G~ 337 (748)
.+... .....|+.+.+++||+.+ ..| ++.+++.++++++.+ .++|++|++.|.++++.
T Consensus 109 ~~~~~~~~~~~d~~~~A~a~G~~~~~~v----~~~~el~~al~~a~~-~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 109 VGGQPTVSFDVSLPAIAKACGYRAVYEV----PSLEELVAALAKALA-ADGPAFIEVKVRPGSRS 168 (188)
T ss_pred cCCcCCCCCCCCHHHHHHHcCCceEEec----CCHHHHHHHHHHHHh-CCCCEEEEEEecCCCCC
Confidence 54321 123468999999999997 578 489999999999987 78999999999887663
No 63
>PRK06163 hypothetical protein; Provisional
Probab=99.62 E-value=4.9e-15 Score=149.99 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=99.8
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHc-CCCcEEEEEECCCCcccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-GLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~-~L~~li~Ivd~N~~~i~~ 276 (748)
.|+||+++|.|+|+++|.+ +++|||++|||+++ |...+|.+|+++ +++.++||+||++|++.+
T Consensus 56 ~GsMG~glpaAiGaalA~p--------------~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~ 119 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQP--------------KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQITG 119 (202)
T ss_pred ecccccHHHHHHHHHHhCC--------------CCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhcC
Confidence 6899999999999999975 78899999999999 888999999877 688888888888998754
Q ss_pred ccc--ccccccHHHHHhhCCcE-EEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeecc
Q 004509 277 DTE--IAFTENVDKRFEGLGWH-VIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 335 (748)
Q Consensus 277 ~~~--~~~~~~~~~~~~a~G~~-~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~ 335 (748)
... .....|+.+.+++||++ ..+| ++.++|.++++++++ .++|++|++++....
T Consensus 120 ~~~~~~~~~~Df~~lA~a~G~~~~~~v----~~~~el~~al~~a~~-~~~p~lIeV~i~~~~ 176 (202)
T PRK06163 120 GQPTLTSQTVDVVAIARGAGLENSHWA----ADEAHFEALVDQALS-GPGPSFIAVRIDDKP 176 (202)
T ss_pred CccCCCCCCCCHHHHHHHCCCceEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEecCCC
Confidence 322 12346899999999998 6788 499999999999987 789999999997654
No 64
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.61 E-value=2.7e-15 Score=146.32 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=98.4
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHc-CCCcEEEEEECCCCccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-GLGKLIAFYDDNHISID 275 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~-~L~~li~Ivd~N~~~i~ 275 (748)
..|+||+++|.|+|+++|.+ ++|||++|||+|+ |...++.+++++ +++.+++|+||++|++.
T Consensus 40 ~~gsmG~~lp~AiGa~~a~~---------------~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~ 102 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGLS---------------RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGST 102 (157)
T ss_pred eecchhhHHHHHHHHHhcCC---------------CcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccccc
Confidence 37999999999999999752 5799999999998 778889999998 48777888899999876
Q ss_pred ccccc-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 276 GDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 276 ~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
+.... ....|+.+.+++||+++.++ ++++++.++++++.+ .++|++|++++.+
T Consensus 103 ~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~-~~gp~vi~v~i~~ 156 (157)
T cd02001 103 GGQPTPSSNVNLEAWAAACGYLVLSA----PLLGGLGSEFAGLLA-TTGPTLLHAPIAP 156 (157)
T ss_pred CCcCCCCCCCCHHHHHHHCCCceEEc----CCHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 53322 22579999999999999998 489999999999997 7899999999865
No 65
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.61 E-value=3.2e-15 Score=149.96 Aligned_cols=116 Identities=24% Similarity=0.322 Sum_probs=99.6
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+++ +.+++|.+|.+++|+.+++|+||++|++..
T Consensus 48 ~~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~ 111 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVARP--------------DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVR 111 (186)
T ss_pred CccchhchHHHHHHHHHhCC--------------CCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccHHHH
Confidence 45889999999999999865 67899999999999 888999999999998888899999887543
Q ss_pred cc------------cccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT------------EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~------------~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. ......|+.+.+++||+++.+| ++.+++.++++++.+ .++|++|+|.|.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~liev~~~~ 175 (186)
T cd02015 112 QWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV----EKPEELEAALKEALA-SDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 21 0112468999999999999999 488999999999987 7899999999975
No 66
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.61 E-value=2.2e-15 Score=152.35 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=100.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+++|.|+|+++|.+ +++|+|++|||+++ |...+|.+|.+++|+.+++|+||++|++..
T Consensus 51 ~~g~mG~~lpaaiGa~la~p--------------~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~ 114 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAAP--------------DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWGAEK 114 (196)
T ss_pred CCcccccHHHHHHHHHHhCC--------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 45889999999999999865 77899999999999 788999999999998888888999998754
Q ss_pred ccc-----------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh--cCCCCEEEEEEeeecc
Q 004509 277 DTE-----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLIRVTTTIGF 335 (748)
Q Consensus 277 ~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~--~~~~P~vI~~~T~kg~ 335 (748)
..+ .....|+.+.+++||+++.+| ++.++|.+++++|.+ +.++|++|++.+.+..
T Consensus 115 ~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 115 KNQVDFYNNRFVGTELESESFAKIAEACGAKGITV----DKPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 211 112468999999999999999 489999999999975 2478999999997543
No 67
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.60 E-value=2.9e-15 Score=152.17 Aligned_cols=119 Identities=21% Similarity=0.276 Sum_probs=101.2
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+|+ |...+|.+|.+++|+.+++|+||++|++..
T Consensus 55 ~~GsmG~~lpaaiGa~la~p--------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~yg~~~ 118 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP--------------DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGLIR 118 (202)
T ss_pred CccchhhhhHHHHhHHhhCC--------------CCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchHHHHH
Confidence 46899999999999999975 78899999999999 888999999999999999999999998643
Q ss_pred ccc------------cc---------ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEee
Q 004509 277 DTE------------IA---------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~------------~~---------~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~ 332 (748)
..+ .. ...|+.+.+++||++..+| ++.++|.++|++|.+ ..++|++|++.+.
T Consensus 119 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~~~~~~~~p~liev~i~ 194 (202)
T cd02006 119 QAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRV----TKPEELAAAFEQAKKLMAEHRVPVVVEAILE 194 (202)
T ss_pred HHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHHhcccCCCcEEEEEEec
Confidence 211 00 1368999999999999999 489999999999984 2579999999986
Q ss_pred ecc
Q 004509 333 IGF 335 (748)
Q Consensus 333 kg~ 335 (748)
...
T Consensus 195 ~~~ 197 (202)
T cd02006 195 RVT 197 (202)
T ss_pred ccc
Confidence 543
No 68
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.60 E-value=3e-12 Score=149.01 Aligned_cols=464 Identities=16% Similarity=0.175 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc-chhhHHHHHHHHHHcCCC--cEEEEEECCCCccccccccc
Q 004509 205 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHISIDGDTEIA 281 (748)
Q Consensus 205 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~Eal~~A~~~~L~--~li~Ivd~N~~~i~~~~~~~ 281 (748)
=|..-|++-|.+-. .++.. +.....-+++-||++| .+|+++|.||++..++++ -.|.||.||+++..+.....
T Consensus 625 dpVleGivRakQd~---l~~g~-~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~ 700 (1228)
T PRK12270 625 DPVLEGIVRAKQDR---LDKGE-EGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESS 700 (1228)
T ss_pred chHhhhhhhhhhhh---hcccc-cCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcccc
Confidence 36777888876532 12111 1123456888999995 679999999999999983 28999999999988765422
Q ss_pred -ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHH
Q 004509 282 -FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVD 357 (748)
Q Consensus 282 -~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~ 357 (748)
......+++++++..++.| ||. |++++.++.+.|.+ .-+||+||++.|+|.+||-..+++... .+.-++
T Consensus 701 Rss~y~td~ak~~~~PifhV-NGd-DpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmt-----qP~mY~ 773 (1228)
T PRK12270 701 RSSEYATDVAKMIQAPIFHV-NGD-DPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMT-----QPLMYD 773 (1228)
T ss_pred ccchhhHHHHhhcCCCEEeE-CCC-CHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccC-----Cchhhh
Confidence 2223455667889999999 999 99999999998876 358999999999999999654433211 111111
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHH-HHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHH---HhcCCC--C----------
Q 004509 358 ATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKS---ISSGQL--P---------- 421 (748)
Q Consensus 358 ~~~~~~~~~~~~~~v~~e~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~---~l~~~~--p---------- 421 (748)
.+++ ...+.+.|.+ ++.+|...+++-...+.+|... +...|.+ ....+. |
T Consensus 774 -~i~~----------~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~---Le~~f~e~re~~~~~~~~~~~~~~~~~~~ 839 (1228)
T PRK12270 774 -LIDA----------KRSVRKLYTEALIGRGDITVEEAEQALRDYQGQ---LERVFNEVREAEKKPPEPPESVESDQGPP 839 (1228)
T ss_pred -hhhh----------cchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH---HHHHHHHHHhcccCCCCCCCCccccccCC
Confidence 1111 1234566766 5667766666655555555432 2222222 111111 1
Q ss_pred Ccccc---------------cCCC-CCCCCc---chhHH----------HHHHHHHH--HHHHhCCCEEEEecCCCCCcc
Q 004509 422 AGWEK---------------ALPT-YTPESP---AEATR----------NLSQTCLN--ALAKTLPGLLGGSADLASSNM 470 (748)
Q Consensus 422 ~~~~~---------------~~p~-~~~~~~---~~~~r----------~a~~~~L~--~l~~~~p~vv~~saDl~~s~~ 470 (748)
..+.. ++|. |..-.+ ...-| =+|++.|. .|+..--.|.+-+.|....+.
T Consensus 840 ~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF 919 (1228)
T PRK12270 840 AGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTF 919 (1228)
T ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcCceeeeeccccCCcce
Confidence 01111 1111 110000 00001 13444332 445455557777888654332
Q ss_pred c-------------cccccccccccCCCCC--ccccccchHHHHHHHHHHHhcCCCCccEE-EeehhHHH---HHHHHHH
Q 004509 471 T-------------LLKMFGDFQKDTPEER--NVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTD---YMRAAIR 531 (748)
Q Consensus 471 ~-------------~~k~~~~f~~~~~p~R--~id~GIaE~~~vg~AaGlA~~G~~~~Piv-~~f~~F~~---r~~dqIr 531 (748)
+ .+..+..+.. -..+ ++|..++|-+.+|+=-|++....--..+. ..|.+|.. -..|+.-
T Consensus 920 ~QRHavl~D~~tg~e~~Pl~~l~~--~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefI 997 (1228)
T PRK12270 920 SQRHAVLIDRETGEEYTPLQNLSD--DQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFI 997 (1228)
T ss_pred eeeeEEEecCCCCcccCcHhhcCC--CcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHH
Confidence 2 1111222211 1234 45999999999999999998875222333 35788863 4556643
Q ss_pred Hhh----ccCCCeEEEEecCCCccCCCCCCCCC--hhhhHHHhcCCCcEEEeeCCHHHHHHHHH-HHHHcCCCcEEEEEc
Q 004509 532 ISA----LCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYK-VAVANRKRPSILALS 604 (748)
Q Consensus 532 ~~a----~~~~pVi~v~t~~g~~~g~dG~THq~--~edia~lr~iPnl~V~~Psd~~e~~~~l~-~a~~~~~~P~~irl~ 604 (748)
-++ -|...|++...| |+ -..||-|.+ +|--=.|.+=.||+|..|+++..--.+|+ +|+....+|.++..|
T Consensus 998 ss~e~KWgQ~S~vvlLLPH-Gy--EGQGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTP 1074 (1228)
T PRK12270 998 SSGEAKWGQRSGVVLLLPH-GY--EGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTP 1074 (1228)
T ss_pred hhhHhhhccccceEEEccC-Cc--CCCCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEECh
Confidence 333 257889998865 44 345999987 45444566788999999999999999998 556556789999998
Q ss_pred CCCCCCCCC-CCccccccceeEE-ecCCC-CCC--CCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHH
Q 004509 605 RQKLPHLAG-TSIDGVEKGAYII-SDNSS-GNK--PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSD 679 (748)
Q Consensus 605 r~~~~~~~~-~~~~~~~~G~~~v-~~~~~-~~g--~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~ 679 (748)
|..+-.-.. .+.+.|.-|+++- +.+.. ..+ -+=+|+++|-.....++..+ +...-++.||-+-.+-||..+.+
T Consensus 1075 KSmLR~KaA~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R~--k~~~~d~AIvRvEQLyP~p~~~l 1152 (1228)
T PRK12270 1075 KSMLRLKAAVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARRE--KDGRDDTAIVRVEQLYPLPRAEL 1152 (1228)
T ss_pred HHhhcchhhcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHHH--hcCCCceEEEEhhhhCCCCHHHH
Confidence 876532111 1233455565542 22110 011 23457788988866554422 23335699999999999987654
Q ss_pred HHhhhhccC---CCceEEEEccccccC
Q 004509 680 AYKESVLPA---AVSARVSIEAGSTFG 703 (748)
Q Consensus 680 ~~~~~v~~~---~~~~vv~vE~~~~~G 703 (748)
. ..+.. ...++.+-||....|
T Consensus 1153 ~---~~l~~ypna~e~~wvQeEP~NqG 1176 (1228)
T PRK12270 1153 R---EALARYPNATEVVWVQEEPANQG 1176 (1228)
T ss_pred H---HHHHhCCCcceeEEeccCcccCC
Confidence 2 22322 224567778877666
No 69
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.59 E-value=4e-16 Score=146.08 Aligned_cols=110 Identities=27% Similarity=0.394 Sum_probs=91.5
Q ss_pred ceeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccc
Q 004509 622 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 701 (748)
Q Consensus 622 G~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~ 701 (748)
|++.+.++ |.|++||+||+|++.|++|++.|+++||+++|||++|++|||.+.+. +.+.+++ . ++|+|++..
T Consensus 1 Gk~~~~~~----g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~--~~~~~~~-~-vvvvee~~~ 72 (124)
T PF02780_consen 1 GKAEVLRE----GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALL--ESLKKTG-R-VVVVEEHYK 72 (124)
T ss_dssp TEEEEEES----SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHH--HHSHHHH-H-HHHSETCES
T ss_pred CEEEEEeC----CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchH--HHHHHhc-c-ccccccccc
Confidence 67788876 79999999999999999999999999999999999999999998874 2233332 3 589999975
Q ss_pred -cCcchhh---------c---CCccEEee-CcCCCCCCHHHHHHHhCCCHHHH
Q 004509 702 -FGWEKIV---------G---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAV 740 (748)
Q Consensus 702 -~G~~~~v---------~---~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I 740 (748)
.|+++.+ . .++.++|. |.|+++| .+++++.+|+|+++|
T Consensus 73 ~gg~g~~i~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 73 IGGLGSAIAEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp EEEEHSSHHHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred cccHHHHHHHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 4565432 1 35678999 8999999 999999999999987
No 70
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.59 E-value=3e-15 Score=148.91 Aligned_cols=112 Identities=27% Similarity=0.312 Sum_probs=94.8
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccc
Q 004509 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (748)
Q Consensus 199 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~ 278 (748)
|+||+++|.|+|+++|.+ +++|+|++|||+++.+ .++|.+|.+++++.+++|+||++|++....
T Consensus 49 g~mG~~lp~aiGaala~~--------------~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~~ 112 (178)
T cd02002 49 GGLGWGLPAAVGAALANP--------------DRKVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRSF 112 (178)
T ss_pred ccccchHHHHHHHHhcCC--------------CCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHHH
Confidence 999999999999999865 6789999999999955 578999999999877778888888875421
Q ss_pred c---------------c---cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 279 E---------------I---AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 279 ~---------------~---~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
+ . ....|+.+++++||+++.+| ++++++.++++++.+ .++|++|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~vi~v~v 178 (178)
T cd02002 113 LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV----ETPEELDEALREALA-EGGPALIEVVV 178 (178)
T ss_pred HHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 1 0 12368999999999999999 378999999999987 78999999874
No 71
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.58 E-value=1.3e-14 Score=144.43 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=100.5
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+++ +...+|.+|.+++++.+++|+||++|++..
T Consensus 46 ~~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~ 109 (177)
T cd02010 46 GLATMGVALPGAIGAKLVYP--------------DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLIK 109 (177)
T ss_pred CChhhhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcchHHH
Confidence 56899999999999999865 67899999999998 888999999999999899999999998753
Q ss_pred ccc---------cc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DTE---------IA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~~---------~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
..+ .. ...|+.+.+++||.+..+| .+.+++.++++++.+ .++|++|++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~liev~~~~ 171 (177)
T cd02010 110 WKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRI----ESADDLLPVLERALA-ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEecc
Confidence 211 11 2458999999999999999 499999999999998 7899999999854
No 72
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.58 E-value=1.1e-14 Score=145.68 Aligned_cols=117 Identities=25% Similarity=0.272 Sum_probs=99.2
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++++.+++|+|||+|++..
T Consensus 48 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~~~~ 111 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP--------------DRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIER 111 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC--------------CCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcEEEE
Confidence 56999999999999999875 67899999999998 566669999999999999999999998754
Q ss_pred ccc-------ccccccHHHHHhhCC----cEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DTE-------IAFTENVDKRFEGLG----WHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~~-------~~~~~~~~~~~~a~G----~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
... .....|+.+.+++|| +++.+| ++.+++.++|+++.+..++|++||+.|.+
T Consensus 112 ~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v----~~~~el~~al~~a~~~~~~p~liev~~~~ 175 (183)
T cd02005 112 AIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRV----KTEGELDEALKDALFNRDKLSLIEVILPK 175 (183)
T ss_pred EeccCCcCcccCCCCCHHHHHHHhCCCccccEEEe----cCHHHHHHHHHHHHhcCCCcEEEEEEcCc
Confidence 221 112468999999999 689998 49999999999998634799999999864
No 73
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.56 E-value=2.6e-14 Score=142.59 Aligned_cols=114 Identities=24% Similarity=0.332 Sum_probs=94.8
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCC-CcEEEEEECCCCcccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL-GKLIAFYDDNHISIDG 276 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L-~~li~Ivd~N~~~i~~ 276 (748)
.|+||+++|.|+|+++|. +++|+|++|||+++ +..++|.+|+++++ +.+++|+||++|++.+
T Consensus 41 ~gsmG~~lpaAiGa~la~---------------~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~ 103 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT---------------DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYGSTG 103 (181)
T ss_pred ccccccHHHHHHHHHHcC---------------CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCcccccc
Confidence 689999999999999985 35799999999999 66789999999995 6677777888888765
Q ss_pred ccc--ccccccHHHHHhhCCcEEEE-EccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DTE--IAFTENVDKRFEGLGWHVIW-VKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~~--~~~~~~~~~~~~a~G~~~~~-v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
... .....|+.+.+++|||++.+ | ++++++.++|+ +.+ .++|++|+|.+.++
T Consensus 104 ~q~~~~~~~~d~~~lA~a~G~~~~~~v----~~~~~l~~al~-a~~-~~~p~li~v~~~~~ 158 (181)
T TIGR03846 104 NQPTPASRRTDLELVAKAAGIRNVEKV----ADEEELRDALK-ALA-MKGPTFIHVKVKPG 158 (181)
T ss_pred CcCCCCCCCCCHHHHHHHCCCCeEEEe----CCHHHHHHHHH-HHc-CCCCEEEEEEeCCC
Confidence 321 11256899999999999998 7 48999999997 776 78999999998754
No 74
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.55 E-value=3.4e-14 Score=141.48 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=96.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+++ +...+|.++.+++++.+++|+||++|++..
T Consensus 49 ~~g~mG~~~~~aiGa~~a~~--------------~~~vv~i~GDG~f~--~~~~el~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAYP--------------DRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred CCchhhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCchhHHH
Confidence 45899999999999999864 67899999999999 556679999999998888888888887632
Q ss_pred cc---------cc-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT---------EI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. .. ....|+.+++++||+++..+ ++++++.++++++.+ .++|++|+++|.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~el~~~l~~a~~-~~~p~liev~~~~ 174 (178)
T cd02014 113 WEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRV----EDPDELEAALDEALA-ADGPVVIDVVTDP 174 (178)
T ss_pred HHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 11 11 12468999999999999998 488999999999987 7899999999864
No 75
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.55 E-value=1.2e-14 Score=140.93 Aligned_cols=115 Identities=23% Similarity=0.322 Sum_probs=97.6
Q ss_pred cccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccc
Q 004509 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (748)
Q Consensus 196 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~ 275 (748)
...|+||+++|.|+|+++|.+ +++|||++|||+++ +...+|.+|.+++++.++||+||+.|++.
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~p--------------~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~~~~ 88 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALARP--------------DRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGYGMT 88 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHST--------------TSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBSHHH
T ss_pred CCccccCCHHHhhhHHHhhcC--------------cceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcceEe
Confidence 367899999999999999854 78999999999999 77889999999999999999999999775
Q ss_pred cccc-----------c---cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004509 276 GDTE-----------I---AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 276 ~~~~-----------~---~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
+... . ....|+.+.+++||+++.+| +-. |++++.+++++|.+ .++|+||+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-~~~-~~~el~~al~~a~~-~~gp~vIeV 153 (153)
T PF02775_consen 89 GGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARV-TTP-DPEELEEALREALE-SGGPAVIEV 153 (153)
T ss_dssp HHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEE-SCH-SHHHHHHHHHHHHH-SSSEEEEEE
T ss_pred ccccccCcCcccccccccccccCCHHHHHHHcCCcEEEE-ccC-CHHHHHHHHHHHHh-CCCcEEEEc
Confidence 4321 0 23468999999999999998 433 55999999999997 899999986
No 76
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.54 E-value=8.9e-14 Score=152.51 Aligned_cols=130 Identities=24% Similarity=0.408 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcC
Q 004509 180 SKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLG 259 (748)
Q Consensus 180 s~~~Ghp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~ 259 (748)
...+|||..+ +..|+||+++|.|+|+|++.+ +++|||+.|||+++ |..++|.++++++
T Consensus 208 ~~~~~~~~~f------~~~GsMG~a~p~AlG~ala~p--------------~r~Vv~i~GDGsfl--m~~~eL~t~~~~~ 265 (361)
T TIGR03297 208 RIGQGHARDF------LTVGSMGHASQIALGLALARP--------------DQRVVCLDGDGAAL--MHMGGLATIGTQG 265 (361)
T ss_pred ccccCCCCce------EeechhhhHHHHHHHHHHHCC--------------CCCEEEEEChHHHH--HHHHHHHHHHHhC
Confidence 3456787643 346999999999999999865 68899999999999 8888999999999
Q ss_pred CCcEE-EEEECCCCccccccc-ccccccHHHHHhhCCc-EEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccC
Q 004509 260 LGKLI-AFYDDNHISIDGDTE-IAFTENVDKRFEGLGW-HVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 336 (748)
Q Consensus 260 L~~li-~Ivd~N~~~i~~~~~-~~~~~~~~~~~~a~G~-~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G 336 (748)
+.|++ +|+||+.|+..+... .....|+.+.+++||| .++.| ++.++|.++++++++ .++|++|++++.+|.+
T Consensus 266 ~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v----~~~~eL~~al~~a~~-~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 266 PANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEV----STLEELETALTAASS-ANGPRLIEVKVRPGSR 340 (361)
T ss_pred CCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEe----CCHHHHHHHHHHHHh-CCCcEEEEEEecCCCc
Confidence 75555 555555555443221 2235789999999998 56777 399999999999987 7899999999987653
No 77
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.54 E-value=3.6e-14 Score=141.40 Aligned_cols=116 Identities=21% Similarity=0.277 Sum_probs=97.2
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCC-CcEEEEEECCCCcccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL-GKLIAFYDDNHISIDG 276 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L-~~li~Ivd~N~~~i~~ 276 (748)
.|+||+++|.|+|+|+|.+ ++|+|++|||+++ +..+++.++.++++ +.+++|+|||+|++.+
T Consensus 41 ~g~mG~~lp~AiGaala~~---------------~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~ 103 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP---------------RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTG 103 (179)
T ss_pred ccchhhHHHHHHHHHhcCC---------------CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccccC
Confidence 6999999999999999853 4699999999998 66789999999996 4567778999999865
Q ss_pred cccc--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccC
Q 004509 277 DTEI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 336 (748)
Q Consensus 277 ~~~~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G 336 (748)
.... ....|+.+++++||+++..+ +| +++++.+++++++ ++|++|+++|.++.+
T Consensus 104 ~~~~~~~~~~d~~~lA~a~G~~~~~v-~~--~~~el~~al~~a~---~gp~lIev~~~~~~~ 159 (179)
T cd03372 104 NQPTHAGKKTDLEAVAKACGLDNVAT-VA--SEEAFEKAVEQAL---DGPSFIHVKIKPGNT 159 (179)
T ss_pred CCCCCCCCCCCHHHHHHHcCCCeEEe-cC--CHHHHHHHHHHhc---CCCEEEEEEEcCCCC
Confidence 4321 12468999999999999999 43 7999999999987 689999999987665
No 78
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.54 E-value=3e-14 Score=141.51 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=96.7
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|.||.++|.|+|+++|. +++|||++|||+++ +...+|.+|.+++++.+++|+||++|++..
T Consensus 49 g~g~mG~~l~~aiGa~la~---------------~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~ 111 (175)
T cd02009 49 GASGIDGTLSTALGIALAT---------------DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFS 111 (175)
T ss_pred CccchhhHHHHHHHHHhcC---------------CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchhe
Confidence 3478999999999999984 35699999999999 888999999999999999999999887643
Q ss_pred ccc---------cc----ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 277 DTE---------IA----FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 277 ~~~---------~~----~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
..+ .. ...|+.+.+++||+++.+| ++.+++.++|+++.+ .++|++|++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIev~v 174 (175)
T cd02009 112 LLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRV----SSLDELEQALESALA-QDGPHVIEVKT 174 (175)
T ss_pred eccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeC----CCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 211 01 1468999999999999999 499999999999987 78999999986
No 79
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.47 E-value=2.8e-13 Score=136.72 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=95.3
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchh-cchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 199 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~-~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
|+||+++|.|+|+++|.+ +++|||++|||+ ++ +...+|.+|.+++++.+++|+||+.|++.+.
T Consensus 51 g~mG~glpaAiGa~la~p--------------~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~ 114 (193)
T cd03375 51 TLHGRALAVATGVKLANP--------------DLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKG 114 (193)
T ss_pred hhhccHHHHHHHHHHhCC--------------CCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCC
Confidence 889999999999999865 789999999999 55 6778999999999988889999999887542
Q ss_pred ccc-----------------cccccHHHHHhhCCcEEE---EEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 278 TEI-----------------AFTENVDKRFEGLGWHVI---WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 278 ~~~-----------------~~~~~~~~~~~a~G~~~~---~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
... ....|+.+.+++||.+++ .| ++++++.+++++|.+ .++|++|++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v----~~~~el~~al~~al~-~~gp~vIev~~~ 184 (193)
T cd03375 115 QASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFS----GDIKQLKEIIKKAIQ-HKGFSFVEVLSP 184 (193)
T ss_pred ccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEec----CCHHHHHHHHHHHHh-cCCCEEEEEECC
Confidence 210 012588999999999985 55 389999999999998 789999999864
No 80
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.44 E-value=2.7e-13 Score=156.72 Aligned_cols=117 Identities=26% Similarity=0.320 Sum_probs=101.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+|+|.|+|++++.+ ++.|+|++|||+|+ |+.++|.+|.+++++.+++|+||+.|++..
T Consensus 406 ~~GtMG~glPaAIGAkla~P--------------~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~ 469 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAAP--------------DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMVR 469 (550)
T ss_pred CCccccchHHHHHHHHhhCC--------------CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccch
Confidence 67999999999999999976 78899999999999 999999999999998888888888887755
Q ss_pred cccc----------ccccc-HHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DTEI----------AFTEN-VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~~~----------~~~~~-~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
..+. ..... +.+.+++||++..+| ++.+++.++|++|.+ .++|++|++.+...
T Consensus 470 ~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v----~~~~el~~al~~al~-~~~p~lidv~id~~ 533 (550)
T COG0028 470 QWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV----ETPEELEEALEEALA-SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 4321 12223 999999999999999 599999999999998 88999999999865
No 81
>PRK12474 hypothetical protein; Provisional
Probab=99.44 E-value=2.9e-13 Score=156.62 Aligned_cols=113 Identities=25% Similarity=0.272 Sum_probs=98.3
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |..++|.+|.+++|+.++||+||++|.+...
T Consensus 388 ~gsmG~glpaAiGa~lA~p--------------~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~ 451 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAAP--------------DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAILNG 451 (518)
T ss_pred CCccCccHHHHHHHHHHCC--------------CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchHHHH
Confidence 4999999999999999975 78899999999999 8899999999999999999999999986431
Q ss_pred c-----------------cccc-cccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 278 T-----------------EIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 278 ~-----------------~~~~-~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
. +... ..|+.+++++||++..+| ++.++|.++++++.+ .++|++|++.+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv----~~~~eL~~al~~a~~-~~~p~liev~~ 518 (518)
T PRK12474 452 ELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRA----TTAEEFSAQYAAAMA-QRGPRLIEAMI 518 (518)
T ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 1 0011 248999999999999999 589999999999987 78999999874
No 82
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.43 E-value=4.6e-13 Score=155.74 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=101.5
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 406 ~~g~mG~~lpaaiGa~la~~--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~ 469 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVRP--------------NTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYNMVE 469 (539)
T ss_pred CccccccHHHHHHHHHHhCC--------------CCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 46899999999999999875 77899999999999 888999999999999999999999998643
Q ss_pred ccc----------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DTE----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
..+ .....|+.+.+++||++..+| +++++|.++|++|.+ .++|++|++.+.+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V----~~~~eL~~al~~a~~-~~~p~lIev~v~~~ 532 (539)
T TIGR02418 470 FQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRV----ESPDQLEPTLRQAME-VEGPVVVDIPVDYS 532 (539)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 211 012468999999999999999 599999999999987 78999999999653
No 83
>PRK06154 hypothetical protein; Provisional
Probab=99.42 E-value=5e-13 Score=156.06 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=101.1
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ |..++|.+|.+++|+.++||+||++|++..
T Consensus 429 ~~gsmG~glpaaiGa~la~p--------------~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~ 492 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLARP--------------DALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGGYD 492 (565)
T ss_pred CCcccccHHHHHHHHHHhCC--------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccceee
Confidence 35899999999999999975 78899999999999 888999999999999999999999998643
Q ss_pred ccc---------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh--cCCCCEEEEEEeeec
Q 004509 277 DTE---------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~~---------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~--~~~~P~vI~~~T~kg 334 (748)
... .....|+.+++++||.++.+| ++.++|.++|++|.+ ..++|++|++.+.+.
T Consensus 493 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V----~~~~el~~al~~a~~~~~~~~p~lIev~v~~~ 557 (565)
T PRK06154 493 KVMPVSTTKYRATDISGDYAAIARALGGYGERV----EDPEMLVPALLRALRKVKEGTPALLEVITSEE 557 (565)
T ss_pred hhhhhhcCcccccCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHhhccCCCeEEEEEEeChH
Confidence 211 112358999999999999999 599999999999985 257899999998654
No 84
>PRK07586 hypothetical protein; Validated
Probab=99.42 E-value=5.3e-13 Score=154.40 Aligned_cols=113 Identities=24% Similarity=0.280 Sum_probs=98.0
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+++|.|+|+++|.+ +++|+|++|||+|+ |..++|.+|.+++|+.++||+||++|++...
T Consensus 384 ~g~mG~~lpaaiGa~lA~p--------------~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~ 447 (514)
T PRK07586 384 GGAIGQGLPLATGAAVACP--------------DRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAYAILRG 447 (514)
T ss_pred CcccccHHHHHHHHHHhCC--------------CCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchhHHHHH
Confidence 3889999999999999975 78899999999999 8899999999999999999999999986431
Q ss_pred c-----------------ccc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 278 T-----------------EIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 278 ~-----------------~~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
. ... ...|+.+.+++||+++.+| ++.++|.++++++.+ .++|++|++.+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V----~~~~el~~al~~a~~-~~~p~liev~~ 514 (514)
T PRK07586 448 ELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRV----TTAEEFADALAAALA-EPGPHLIEAVV 514 (514)
T ss_pred HHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEe----CCHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 0 011 1358999999999999999 589999999999987 78999999874
No 85
>PRK08266 hypothetical protein; Provisional
Probab=99.42 E-value=4.6e-13 Score=155.90 Aligned_cols=117 Identities=26% Similarity=0.346 Sum_probs=100.0
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+++|.|+|++++.+ +++|+|++|||+|+ +.+++|.+|.+++|+.+++|+|||+|++...
T Consensus 401 ~GsmG~~lp~aiGa~la~p--------------~~~vv~v~GDG~f~--~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 401 QGTLGYGFPTALGAKVANP--------------DRPVVSITGDGGFM--FGVQELATAVQHNIGVVTVVFNNNAYGNVRR 464 (542)
T ss_pred CcccccHHHHHHHHHHhCC--------------CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 4899999999999999864 77899999999999 6689999999999998888999999975321
Q ss_pred cc----------c-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeecc
Q 004509 278 TE----------I-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 335 (748)
Q Consensus 278 ~~----------~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~ 335 (748)
.+ . ....|+.+++++||.++.+| ++.+++.++++++.+ .++|++|++.|.++.
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~liev~i~~~~ 528 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV----DSPEELRAALEAALA-HGGPVLIEVPVPRGS 528 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe----CCHHHHHHHHHHHHh-CCCcEEEEEEecCCC
Confidence 11 0 12358999999999999999 489999999999987 789999999998764
No 86
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.42 E-value=3.7e-13 Score=157.90 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=99.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 416 ~~gsmG~glpaaiGa~lA~p--------------dr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~ 479 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAADP--------------KRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYLGLIR 479 (588)
T ss_pred ccccccchHhHHHhhhhhCC--------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHH
Confidence 35899999999999999975 78899999999999 888999999999999999999999997643
Q ss_pred ccc------------cc---------ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEee
Q 004509 277 DTE------------IA---------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~------------~~---------~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~ 332 (748)
..+ .. ...|+.+.+++||.+..+| ++.++|.++|+++.+ ..++|+||+|.+.
T Consensus 480 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V----~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~ 555 (588)
T TIGR01504 480 QAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV----FKPEEIAPAFEQAKALMAEHRVPVVVEVILE 555 (588)
T ss_pred HHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 211 00 1368999999999999999 499999999999974 2589999999996
Q ss_pred e
Q 004509 333 I 333 (748)
Q Consensus 333 k 333 (748)
+
T Consensus 556 ~ 556 (588)
T TIGR01504 556 R 556 (588)
T ss_pred c
Confidence 4
No 87
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.41 E-value=8.6e-13 Score=154.62 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=100.5
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 406 ~~G~mG~~lpaAiGa~la~p--------------~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~ 469 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAHP--------------GRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGFVA 469 (574)
T ss_pred CcccccchHHHHHHHHHhCC--------------CCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCccccHH
Confidence 45899999999999999875 78899999999999 888999999999999999999999898742
Q ss_pred cc---------cc-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT---------EI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. .. ....|+.+.+++||+++.+| ++.++|.++++++.+ .++|++|+|.+.+
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~lIev~i~~ 531 (574)
T PRK09124 470 MEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRV----EKASELDGALQRAFA-HDGPALVDVVTAK 531 (574)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 10 01 12358999999999999999 499999999999987 7899999999865
No 88
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.41 E-value=7.8e-13 Score=155.26 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=100.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|||++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 435 ~~gsmG~glpaaiGa~lA~p--------------~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~~~i~ 498 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAHP--------------DDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYLGMVR 498 (587)
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcchHHH
Confidence 45899999999999999975 67899999999999 888999999999999999999999887543
Q ss_pred cc---------ccc---ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DT---------EIA---FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~---------~~~---~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
.. ... ...|+.+++++||++..+| ++.++|.++|++|.+..++|+||+|.+.+-
T Consensus 499 ~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v----~~~~eL~~al~~a~~~~~~p~lieV~i~~~ 564 (587)
T PRK06965 499 QWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRI----EKTSDVEPALREALRLKDRTVFLDFQTDPT 564 (587)
T ss_pred HHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 21 111 2368999999999999999 599999999999986347899999999753
No 89
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.41 E-value=1.3e-12 Score=135.68 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=94.1
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhc-chhhHHHHHHHHHHcCCCcEEEEEECCCCccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~ 275 (748)
..|+||+|+|.|+|.+++.+ +++|||++|||++ + +..++|.+|.+++++.+++|+||..|++.
T Consensus 60 ~~gsmG~GlpaAiGa~~a~p--------------~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~t 123 (235)
T cd03376 60 NAAAVASGIEAALKALGRGK--------------DITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMNT 123 (235)
T ss_pred CHHHHHHHHHHHHHHhccCC--------------CCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCcccccC
Confidence 34799999999999877654 6789999999995 6 77889999999999877778888777742
Q ss_pred cccc----------------------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 276 GDTE----------------------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 276 ~~~~----------------------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
+... .....|+.+.+++||++++....-. +++++.++++++.+ .++|++|++.+.
T Consensus 124 g~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~-~~~el~~al~~a~~-~~gP~lIev~~~ 200 (235)
T cd03376 124 GIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVA-YPEDLYKKVKKALS-IEGPAYIHILSP 200 (235)
T ss_pred CCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCC-CHHHHHHHHHHHHh-CCCCEEEEEECC
Confidence 1110 0023589999999999986411335 99999999999998 789999999875
No 90
>PRK07524 hypothetical protein; Provisional
Probab=99.41 E-value=8.7e-13 Score=153.34 Aligned_cols=119 Identities=22% Similarity=0.313 Sum_probs=101.5
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 405 ~~g~mG~~lp~aiGa~lA~p--------------~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~g~i~ 468 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGAP--------------ERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGYGEIR 468 (535)
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCchHHHH
Confidence 45999999999999999965 78899999999998 777889999999998888899998997532
Q ss_pred c---------ccc-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccC
Q 004509 277 D---------TEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 336 (748)
Q Consensus 277 ~---------~~~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G 336 (748)
. ... ....|+.+.+++||+++.+| ++.+++.++++++.+ .++|++|+|++.+-.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~liev~~~~~~~ 533 (535)
T PRK07524 469 RYMVARDIEPVGVDPYTPDFIALARAFGCAAERV----ADLEQLQAALRAAFA-RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEECCcccc
Confidence 1 111 12468999999999999999 499999999999998 7899999999987554
No 91
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.41 E-value=7.9e-13 Score=153.75 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=99.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |..++|.+|.+++|+.++||+||++|++..
T Consensus 402 ~~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~ 465 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTACP--------------NRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVER 465 (539)
T ss_pred hhhhhhhHHHHHHHHHhcCC--------------CCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEE
Confidence 45999999999999999865 78899999999999 999999999999999999999999998643
Q ss_pred ccc-------ccccccHHHHHhhCCcE----EEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 277 DTE-------IAFTENVDKRFEGLGWH----VIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~-------~~~~~~~~~~~~a~G~~----~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
... .....|+.+.+++||.+ +.+| ++.++|.++++++.+ .++|++|++.+.
T Consensus 466 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v----~~~~el~~al~~a~~-~~~p~liev~i~ 527 (539)
T TIGR03393 466 AIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRV----SEAEQLADVLEKVAA-HERLSLIEVVLP 527 (539)
T ss_pred eecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEe----ccHHHHHHHHHHHhc-cCCeEEEEEEcC
Confidence 211 12246899999999985 8898 599999999999987 789999999985
No 92
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.40 E-value=6.5e-13 Score=156.06 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=100.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 428 ~~gsmG~glpaaiGa~lA~p--------------~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~ 491 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAHP--------------DALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYMGMVR 491 (595)
T ss_pred CchhhhhhHHHHHHHHHhCC--------------CCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 45899999999999999975 78899999999999 888999999999999999999999998643
Q ss_pred cc---------ccc---ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT---------EIA---FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~~~---~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. ... ...|+.+.+++||.+..+| ++.++|.++|+++.+ .++|+||+|.+.+
T Consensus 492 ~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIeV~i~~ 555 (595)
T PRK09107 492 QWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRC----EKPGDLDDAIQEMID-VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 11 111 1368999999999999999 499999999999987 7899999999974
No 93
>PRK07064 hypothetical protein; Provisional
Probab=99.40 E-value=6.2e-13 Score=154.89 Aligned_cols=115 Identities=28% Similarity=0.331 Sum_probs=99.6
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++...
T Consensus 404 ~g~mG~~lpaAiGa~lA~p--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~ 467 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAGP--------------GRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGYGVIRN 467 (544)
T ss_pred CCccccccchhhhhhhhCc--------------CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChhHHHHH
Confidence 3789999999999999965 77899999999999 8889999999999998999999999986431
Q ss_pred cc-----------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 278 TE-----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 278 ~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.+ .....|+.+.+++||+++.+| ++.++|.++++++.+ .++|++|++.+..
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~lIeV~~~~ 529 (544)
T PRK07064 468 IQDAQYGGRRYYVELHTPDFALLAASLGLPHWRV----TSADDFEAVLREALA-KEGPVLVEVDMLS 529 (544)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHc-CCCCEEEEEEccc
Confidence 11 112468999999999999999 489999999999987 7899999999863
No 94
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.39 E-value=7.7e-13 Score=154.88 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=100.4
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 419 ~~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~ 482 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAMP--------------DETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFLGMVK 482 (572)
T ss_pred CcccccchhhHHHhhhhhCC--------------CCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCccHHHH
Confidence 44899999999999999975 78899999999999 888999999999999999999999888643
Q ss_pred cc----------cc--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT----------EI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~----------~~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. .. ....|+.+++++||.+..+| ++.++|.++++++.+..++|++|++.+.+
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v----~~~~eL~~al~~a~~~~~~p~lIev~i~~ 547 (572)
T PRK08979 483 QWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRI----SDPDELESGLEKALAMKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 11 11 12368999999999999999 59999999999998733899999999864
No 95
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.39 E-value=1.3e-12 Score=152.59 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=100.6
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++|+.++||+||++|.+..
T Consensus 412 ~~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~ 475 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGKP--------------DKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYLGMVR 475 (561)
T ss_pred CccccccHHHHHHHHHHhCC--------------CCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCccHHHH
Confidence 34899999999999999864 77899999999999 888999999999999999999999997643
Q ss_pred cc----------cc--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT----------EI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~----------~~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. .. ....|+.+++++||.++.+| ++.++|.++|+++.+ .++|++|++.+.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~t~~el~~al~~a~~-~~~p~liev~~~~ 539 (561)
T PRK06048 476 QWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV----EKPSEVRPAIEEAVA-SDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 11 11 13468999999999999999 499999999999987 7899999999965
No 96
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.39 E-value=1.7e-12 Score=152.15 Aligned_cols=117 Identities=20% Similarity=0.274 Sum_probs=100.5
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 406 ~~gsmG~~~paAiGa~la~p--------------~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~ 469 (578)
T PRK06546 406 RHGSMANALPHAIGAQLADP--------------GRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGMVK 469 (578)
T ss_pred CcccccchhHHHHHHHHhCC--------------CCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCccccHH
Confidence 35899999999999999875 67899999999999 777889999999999889999999988642
Q ss_pred cc-------c--c-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DT-------E--I-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~-------~--~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
.. . . ....|+.+.+++||++..+| +++++|.++++++.+ .++|++|++.+.+.
T Consensus 470 ~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v----~~~~el~~al~~a~~-~~gp~lIev~~~~~ 532 (578)
T PRK06546 470 LEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRV----EDPKDVRGALREAFA-HPGPALVDVVTDPN 532 (578)
T ss_pred HHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 10 0 1 23468999999999999999 499999999999988 78999999998654
No 97
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.39 E-value=1.3e-12 Score=152.19 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=100.3
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+|+|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++++.+++|+||++|++...
T Consensus 400 ~g~mG~glpaAiGa~la~p--------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~ 463 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVARP--------------DDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRLGMVRQ 463 (548)
T ss_pred hhhhhchHHHHHHHHHhCC--------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 4899999999999999965 67899999999999 8889999999999999999999999986431
Q ss_pred c---------c---ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 278 T---------E---IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 278 ~---------~---~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
. . .....|+.+.+++||+++.+| ++.++|.++++++.+ .++|++|++.+.+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIeV~id~ 526 (548)
T PRK08978 464 WQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTI----TRKDQVEAALDTLLN-SEGPYLLHVSIDE 526 (548)
T ss_pred HHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 1 0 112368999999999999999 599999999999987 7899999999975
No 98
>PRK05858 hypothetical protein; Provisional
Probab=99.39 E-value=1.2e-12 Score=152.37 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=101.6
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+|+ +...+|.+|.+++|+.++||+||+.|++..
T Consensus 405 ~~gsmG~~lp~aiGa~la~p--------------~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~ 468 (542)
T PRK05858 405 PFGCLGTGPGYALAARLARP--------------SRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWGLEK 468 (542)
T ss_pred CccccccchhHHHHHHHhCC--------------CCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchhhHH
Confidence 35899999999999999875 78899999999999 888999999999999999999999998643
Q ss_pred ccc-----------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DTE-----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
... .....|+.+.+++||..+.+| ++.++|.++++++.+ .++|++|++.|.+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~lIev~~~~~ 532 (542)
T PRK05858 469 HPMEALYGYDVAADLRPGTRYDEVVRALGGHGELV----TVPAELGPALERAFA-SGVPYLVNVLTDPS 532 (542)
T ss_pred HHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCcEEEEEEECCC
Confidence 211 112468999999999999999 599999999999998 78999999999754
No 99
>PRK08611 pyruvate oxidase; Provisional
Probab=99.39 E-value=1.2e-12 Score=153.34 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=101.0
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+|+|.|+|++++.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++...
T Consensus 407 ~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAFP--------------DRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQLAFIKY 470 (576)
T ss_pred chhhhhhHHHHHHHHHhCC--------------CCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 5999999999999999865 77899999999999 8889999999999999999999999986421
Q ss_pred cc---------c-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 278 TE---------I-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 278 ~~---------~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
.+ . ....|+.+.+++||.++.+| ++.++|.++|+++.+ .++|++|++.+.+.
T Consensus 471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~lIeV~vd~~ 532 (576)
T PRK08611 471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRV----EKAEELDPAFEEALA-QDKPVIIDVYVDPN 532 (576)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCCc
Confidence 10 0 12468999999999999999 599999999999987 78999999999753
No 100
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.39 E-value=1.9e-12 Score=151.82 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=97.8
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+++|.|+|+++|.+ +++|+|++|||+++ +.+++|++|.+++|+.++||+||+.|++..
T Consensus 435 g~gsmG~~l~~aiGa~la~~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVARP--------------GAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred CccccccHHHHHHHHHhhCC--------------CCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEE
Confidence 34889999999999999864 67899999999998 889999999999998777888887665432
Q ss_pred ccc---------c--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DTE---------I--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~~---------~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
..+ . ....|+.+++++||+++.+| ++.+++.++++++.+ .++|++|+|++.+.
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v----~~~~el~~al~~a~~-~~gp~lIev~~~~~ 562 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARACGCDGVRV----EDPAELAQALAAAMA-APGPTLIEVITDPS 562 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEcCcc
Confidence 111 0 12458899999999999999 489999999999987 78999999999754
No 101
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.39 E-value=1.1e-12 Score=152.18 Aligned_cols=113 Identities=25% Similarity=0.294 Sum_probs=96.5
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+++|.|+|++++.+ +++|+|++|||+++ +..++|.+|.+++|+.+++|+|||+|++...
T Consensus 406 ~g~mG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~~ 469 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP--------------GRRVIGLIGDGSAM--YSIQALWSAAQLKLPVTFVILNNGRYGALRW 469 (530)
T ss_pred CCcccchHHHHHHHHHhCC--------------CCeEEEEEeCchHh--hhHHHHHHHHHhCCCcEEEEEeChHHHHHHH
Confidence 5899999999999999864 67899999999999 5568999999999988888888888876422
Q ss_pred c----------c-ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 278 T----------E-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 278 ~----------~-~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
. . .....|+.+++++||+++..| ++.+++.++++++.+ .++|++|++.|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v----~~~~~l~~al~~a~~-~~~p~liev~~ 529 (530)
T PRK07092 470 FAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRV----SDAAELADALARALA-ADGPVLVEVEV 529 (530)
T ss_pred HHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEc
Confidence 1 1 113468999999999999999 389999999999987 78999999987
No 102
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.38 E-value=9.5e-13 Score=154.23 Aligned_cols=116 Identities=24% Similarity=0.350 Sum_probs=101.2
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 419 ~~g~mG~glpaAiGa~la~p--------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~ 482 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLARP--------------DKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLGLVR 482 (572)
T ss_pred CcccccchhHHHHHHHHhCC--------------CCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchHHHH
Confidence 35899999999999999975 67899999999999 888999999999999999999999998754
Q ss_pred ccc----------cc--ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DTE----------IA--FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
..+ .. ...|+.+.+++||.+..+| ++.++|.++|++|.+ .++|++|+|.+.+
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~lIev~v~~ 546 (572)
T PRK06456 483 QVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV----TTYEDIEKSLKSAIK-EDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCc
Confidence 211 11 2368999999999999999 599999999999987 7899999999975
No 103
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.38 E-value=1.6e-12 Score=152.35 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=100.6
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 421 ~~gsmG~glpaAiGa~la~p--------------~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~ 484 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAFP--------------DQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGALGMVR 484 (574)
T ss_pred CcchhhchHHHHHHHHHhCC--------------CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 45899999999999999975 78899999999999 888999999999999999999999998643
Q ss_pred cc---------c-c--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT---------E-I--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~-~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. . . ....|+.+++++||.+..+| ++.++|.++|++|.+..++|++|++.+.+
T Consensus 485 ~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~~~~~p~lIev~i~~ 549 (574)
T PRK06466 485 QWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRI----TDLKDLKPKLEEAFAMKDRLVFIDIYVDR 549 (574)
T ss_pred HHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 21 1 1 12368999999999999999 59999999999998722899999999975
No 104
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.38 E-value=1.6e-12 Score=152.23 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=100.4
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 419 ~~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~ 482 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMALP--------------EETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYLGMVK 482 (574)
T ss_pred CccchhhHHHHHHHHHHhCC--------------CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchhhHHH
Confidence 45899999999999999975 67899999999999 889999999999999999999999888633
Q ss_pred cc---------c-cc--ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhc--CCCCEEEEEEeee
Q 004509 277 DT---------E-IA--FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV--TDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~-~~--~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~--~~~P~vI~~~T~k 333 (748)
.. . .. ...|+.+++++||.+..+| ++.++|.++++++.+. .++|++|++.+.+
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v----~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 483 QWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQI----SHPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 11 1 11 2368999999999999999 4999999999999872 3899999999964
No 105
>PLN02573 pyruvate decarboxylase
Probab=99.38 E-value=1.6e-12 Score=152.20 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=100.1
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|.+..
T Consensus 426 ~~gsmG~glpaaiGa~lA~p--------------~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~ 489 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAAP--------------DKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEV 489 (578)
T ss_pred chhhhhhhhhHHHHHHHhCC--------------CCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEE
Confidence 46899999999999999975 78899999999999 999999999999999999999999998754
Q ss_pred ccc-----ccccccHHHHHhhCC-----cEEEEEccCCCCHHHHHHHHHHHHh-cCCCCEEEEEEee
Q 004509 277 DTE-----IAFTENVDKRFEGLG-----WHVIWVKNGNTGYDDIRAAIKEAKA-VTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~-----~~~~~~~~~~~~a~G-----~~~~~v~dG~~D~~~l~~al~~a~~-~~~~P~vI~~~T~ 332 (748)
... .....|+.+++++|| +++.+| ++.++|.+++++|.+ ..++|++|++.+.
T Consensus 490 ~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V----~~~~eL~~al~~a~~~~~~~p~lieV~v~ 552 (578)
T PLN02573 490 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKV----RTEEELIEAIATATGEKKDCLCFIEVIVH 552 (578)
T ss_pred eecccCccccCCCCHHHHHHHhcCcCCceeEEEe----cCHHHHHHHHHHHHhhCCCCcEEEEEEcC
Confidence 221 113468999999985 899999 489999999999974 2589999999985
No 106
>PRK08322 acetolactate synthase; Reviewed
Probab=99.38 E-value=2e-12 Score=150.80 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=101.4
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++++.+++|+||++|++..
T Consensus 404 ~~g~mG~~lpaaiGa~la~p--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~ 467 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVHP--------------DRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMIR 467 (547)
T ss_pred CcccccchhHHHHHHHHhCC--------------CCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchHH
Confidence 45899999999999999865 77899999999999 888999999999999999999999998643
Q ss_pred cc---------ccc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DT---------EIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~---------~~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
.. ... ...|+.+.+++||+++.+| ++.++|.++++++.+ .++|++|+|.|.+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~lIev~v~~~ 530 (547)
T PRK08322 468 WKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRV----ESADDLLPTLEEALA-QPGVHVIDCPVDYS 530 (547)
T ss_pred HHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 21 011 2468999999999999999 499999999999987 78999999998653
No 107
>PLN02470 acetolactate synthase
Probab=99.38 E-value=1.1e-12 Score=154.01 Aligned_cols=116 Identities=24% Similarity=0.228 Sum_probs=100.1
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 424 ~~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~ 487 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAANP--------------DAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHLGMVV 487 (585)
T ss_pred ccccccchHHHHHHHHHhCC--------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 35899999999999999975 67899999999999 888999999999999999999999987542
Q ss_pred cc----------ccc--c-------cccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT----------EIA--F-------TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~----------~~~--~-------~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. ... . ..|+.+.+++||.++.+| ++.++|.++++++.+ .++|++|+|.+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lieV~i~~ 558 (585)
T PLN02470 488 QWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV----TRKSDLREAIQKMLD-TPGPYLLDVIVPH 558 (585)
T ss_pred HHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 11 011 0 158999999999999999 599999999999987 7899999999975
No 108
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.38 E-value=1.8e-12 Score=151.52 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=100.3
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.+++|+||++|++..
T Consensus 412 ~~g~mG~~l~~aiGa~la~p--------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~ 475 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAVP--------------DKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLGMVR 475 (563)
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcchhHH
Confidence 34899999999999999875 67899999999999 777889999999999889999999888643
Q ss_pred cc------------cccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DT------------EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~------------~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
.. ......|+.+++++||.++.+| ++.+++.++|+++.+ .++|+||+|.+.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lieV~v~~~ 540 (563)
T PRK08527 476 QWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRV----TTKEEFDKALKEALE-SDKVALIDVKIDRF 540 (563)
T ss_pred HHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEECCc
Confidence 21 1112358999999999999999 599999999999987 78999999999753
No 109
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.37 E-value=1.6e-12 Score=151.46 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=100.6
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ .+++|+|++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 394 ~~g~mG~glpaaiGa~la~p-------------~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~ 458 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAVE-------------NKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLGMIK 458 (549)
T ss_pred CcchhhhhHHHHHHHHhcCC-------------CCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccchHH
Confidence 45999999999999999863 157899999999999 888999999999999999999999998642
Q ss_pred ccc---------c-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DTE---------I-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~~---------~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
..+ . ....|+.+.+++||.++.+| ++.++|.++++++.+ .++|++|+|+|.+
T Consensus 459 ~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIeV~i~~ 520 (549)
T PRK06457 459 FEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRL----EEPKEAEEIIEEFLN-TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCc
Confidence 110 1 12458999999999999999 599999999999987 7899999999964
No 110
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.37 E-value=1.4e-12 Score=152.44 Aligned_cols=116 Identities=20% Similarity=0.281 Sum_probs=98.2
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+|+|.|+|++++.+ +++|+|++|||+|+ +.+++|.+|.+++|+.+++|+||+.|++...
T Consensus 414 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~ 477 (557)
T PRK08199 414 SGSMGYGLPAAIAAKLLFP--------------ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGTIRM 477 (557)
T ss_pred CccccchHHHHHHHHHhCC--------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 5999999999999999865 78899999999999 8899999999999977777777777875321
Q ss_pred cc----------c-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 278 TE----------I-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 278 ~~----------~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
.+ . ....|+.+.+++||+++.+| ++.+++.++++++.+ .++|++|+|.|.+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~el~~al~~a~~-~~gp~li~v~~~~~ 540 (557)
T PRK08199 478 HQEREYPGRVSGTDLTNPDFAALARAYGGHGETV----ERTEDFAPAFERALA-SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCHH
Confidence 10 0 12358999999999999999 489999999999987 78999999999653
No 111
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.37 E-value=2.2e-12 Score=151.10 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=100.1
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|++++|||+|+ +...+|.++.+++|+.++||+|||+|++..
T Consensus 406 ~~gsmG~glpaAiGa~la~p--------------~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~ 469 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNYP--------------DRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTYGFIK 469 (575)
T ss_pred CcchhhchHHHHHHHHHhCC--------------CCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 35999999999999999865 78899999999999 888999999999999999999999998642
Q ss_pred cc-----c-----ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHH--hcCCCCEEEEEEeee
Q 004509 277 DT-----E-----IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK--AVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~-----~-----~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~--~~~~~P~vI~~~T~k 333 (748)
.. . .....|+.+++++||.++.+| ++.++|.++++++. + .++|++|++++.+
T Consensus 470 ~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v----~~~~el~~al~~a~~~~-~~~p~liev~i~~ 533 (575)
T TIGR02720 470 DEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV----NKIEQLPAVFEQAKAIK-QGKPVLIDAKITG 533 (575)
T ss_pred HHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe----CCHHHHHHHHHHHHhhC-CCCcEEEEEEeCC
Confidence 11 0 012468999999999999999 48999999999998 5 6899999999965
No 112
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.37 E-value=1.2e-12 Score=153.92 Aligned_cols=117 Identities=24% Similarity=0.327 Sum_probs=99.3
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|||++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 417 ~~G~mG~glpaAiGa~la~p--------------~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~ 480 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP--------------DRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYLGLIR 480 (591)
T ss_pred ccccccchhhhHHhhhhhCC--------------CCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCchhHHH
Confidence 45899999999999999865 67899999999999 888999999999999999999999887532
Q ss_pred ccc----------cc-----------ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEee
Q 004509 277 DTE----------IA-----------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~----------~~-----------~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~ 332 (748)
..+ .. ...|+.+.+++||.++.+| +++++|.+|+++|.+ ..++|+||+|.+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v----~~~~eL~~al~~a~~~~~~~~gp~lieV~v~ 556 (591)
T PRK11269 481 QAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRV----FKPEDIAPALEQAKALMAEFRVPVVVEVILE 556 (591)
T ss_pred HHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 110 00 1268999999999999999 599999999999974 2589999999996
Q ss_pred e
Q 004509 333 I 333 (748)
Q Consensus 333 k 333 (748)
+
T Consensus 557 ~ 557 (591)
T PRK11269 557 R 557 (591)
T ss_pred c
Confidence 4
No 113
>PRK08617 acetolactate synthase; Reviewed
Probab=99.37 E-value=1.5e-12 Score=152.02 Aligned_cols=117 Identities=23% Similarity=0.281 Sum_probs=100.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 412 ~~g~mG~~lpaaiGa~la~p--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~ 475 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVRP--------------GKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYNMVE 475 (552)
T ss_pred ccccccccccHHHhhHhhcC--------------CCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccchHH
Confidence 45799999999999999865 67899999999999 888999999999998888999999998643
Q ss_pred ccc---------cc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DTE---------IA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~~---------~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
..+ .. ...|+.+.+++||.++.+| +++++|.++|+++.+ .++|++|++.+.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~liev~~~~~ 538 (552)
T PRK08617 476 FQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV----TSPDELEPVLREALA-TDGPVVIDIPVDYS 538 (552)
T ss_pred HHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCcEEEEEEeccc
Confidence 211 01 2468999999999999999 599999999999987 78999999999753
No 114
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.37 E-value=2e-12 Score=151.69 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=101.0
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 428 ~~g~mG~~lpaaiGa~la~p--------------~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~ 491 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAAP--------------DRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQWGAEK 491 (579)
T ss_pred ccccccchHHHHHhhhhhCC--------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcchHHHH
Confidence 45899999999999999865 67899999999999 888999999999999999999999998643
Q ss_pred ccc----------ccc-c-ccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh--cCCCCEEEEEEeeecc
Q 004509 277 DTE----------IAF-T-ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLIRVTTTIGF 335 (748)
Q Consensus 277 ~~~----------~~~-~-~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~--~~~~P~vI~~~T~kg~ 335 (748)
..+ ... . .|+.+.+++||.++.+| ++.++|.++|+++.+ ..++|++|++.+.+-.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v----~~~~el~~al~~a~~~~~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 492 KNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVV----DKPEDVGPALKKAIAAQAEGKTTVIEIVCTREL 560 (579)
T ss_pred HHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCc
Confidence 111 111 2 48999999999999999 499999999999975 2478999999997644
No 115
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.37 E-value=1.6e-12 Score=153.57 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=100.3
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|||++|||+|+ |...+|.+|.+++|+.++||+||+.|++..
T Consensus 432 ~~g~mG~glpaAiGA~lA~p--------------~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~ 495 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVALP--------------DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQGMVR 495 (616)
T ss_pred CccccccHHHHHHHHHHhCC--------------CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 45899999999999999975 78899999999999 888999999999999899999999887633
Q ss_pred ccc----------cc---ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DTE----------IA---FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~~----------~~---~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
..+ .. ...|+.+++++||.++.+| ++.++|.+++++|.+ .++|+||++.+.+
T Consensus 496 ~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V----~~~~el~~al~~a~~-~~~p~lIeV~i~~ 560 (616)
T PRK07418 496 QWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVI----SERDQLKDAIAEALA-HDGPVLIDVHVRR 560 (616)
T ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 111 01 2368999999999999999 599999999999987 7899999999974
No 116
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.37 E-value=1.4e-12 Score=152.75 Aligned_cols=116 Identities=18% Similarity=0.266 Sum_probs=100.1
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 422 ~~g~mG~glpaAiGaala~p--------------~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~ 485 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAKP--------------DETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEALGMVR 485 (571)
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchHHHHH
Confidence 34899999999999999864 77899999999999 777889999999999999999999988643
Q ss_pred cc---------c-c--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT---------E-I--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~-~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. . . ....|+.+++++||.++.+| ++.++|.++++++.+ .++|++|++.|..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lieV~vd~ 549 (571)
T PRK07710 486 QWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI----DDELEAKEQLQHAIE-LQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 21 0 0 12468999999999999999 489999999999987 7899999999975
No 117
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.36 E-value=2.6e-12 Score=151.22 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=99.4
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH-HHHHHHHHHc-----CCCcEEEEEECC
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA-NEASSLAGHL-----GLGKLIAFYDDN 270 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~-~Eal~~A~~~-----~L~~li~Ivd~N 270 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ |. .++|.+|.++ +|+.++||+||+
T Consensus 413 ~~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~ 476 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAHP--------------DRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNR 476 (597)
T ss_pred ccccccchHHHHHHHHHhCC--------------CCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCC
Confidence 34899999999999999975 78899999999998 88 5889999999 899899999999
Q ss_pred CCcccccc---------c---c-cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 271 HISIDGDT---------E---I-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 271 ~~~i~~~~---------~---~-~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
+|++.... . . ....|+.+.+++||+.+.+| ++.++|.+++++|.+ .++|++|+|.+.+.
T Consensus 477 ~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~eL~~al~~a~~-~~~p~lIeV~~~~~ 548 (597)
T PRK08273 477 DLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRV----DDPEQLGAAWDEALA-ADRPVVLEVKTDPN 548 (597)
T ss_pred cchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 88653211 0 0 12357999999999999999 599999999999987 78999999999653
No 118
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.36 E-value=3.6e-12 Score=149.65 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=99.8
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|.+..
T Consensus 428 ~~g~mG~glpaaiGaala~p--------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~ 491 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP--------------NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQGMVR 491 (585)
T ss_pred cccchhhhHHHHHHHHHhCC--------------CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 45899999999999999965 67899999999999 888999999999999888888888887532
Q ss_pred cc---------c---cc-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT---------E---IA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~---~~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. . .. ...|+.+++++||.++.+| ++.++|.++++++.+ .++|+||++.|..
T Consensus 492 ~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~liev~v~~ 556 (585)
T CHL00099 492 QWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRI----KSRKDLKSSLKEALD-YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEECC
Confidence 11 0 01 1368999999999999999 489999999999987 7899999999974
No 119
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=3.5e-12 Score=149.52 Aligned_cols=118 Identities=18% Similarity=0.276 Sum_probs=98.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ +..++|.+|.+++|+.++||+||++|++..
T Consensus 419 ~~g~mG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~ 482 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAHP--------------EATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFLGMVK 482 (574)
T ss_pred CcccccchhHHHHHHHhhcC--------------CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 45889999999999999965 67899999999999 778999999999998888888888887532
Q ss_pred cc---------c-c--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 277 DT---------E-I--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 277 ~~---------~-~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
.. . . ....|+.+++++||+++.+| ++.++|.++|+++.+..++|+||+|.+.+.
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~eL~~al~~a~~~~~~p~liev~i~~~ 548 (574)
T PRK06882 483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQI----DTPDELEEKLTQAFSIKDKLVFVDVNVDET 548 (574)
T ss_pred HHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 11 1 1 12358999999999999999 489999999999987337899999999753
No 120
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=2.6e-12 Score=150.24 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=99.7
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...++.+|.+++|+.++||+||++|++..
T Consensus 420 ~~gsmG~~lp~aiGa~lA~p--------------~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~ 483 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAKE--------------EELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGMVR 483 (570)
T ss_pred CcccccchhhHHHhhHhhcC--------------CCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHHHH
Confidence 45999999999999999864 78899999999998 778889999999998888888888887643
Q ss_pred ccc-----------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DTE-----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
..+ .....|+.+++++||.+..+| ++.+++.++++++.+ .++|++|++.+..
T Consensus 484 ~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~~l~~al~~a~~-~~~p~liev~id~ 546 (570)
T PRK06725 484 QWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA----TNSTEAKQVMLEAFA-HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 211 112468999999999999999 499999999999987 7899999999864
No 121
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.34 E-value=3.1e-12 Score=149.61 Aligned_cols=116 Identities=23% Similarity=0.303 Sum_probs=99.2
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 417 ~~g~mG~~lpaaiGa~la~~--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~ 480 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALANP--------------ERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEALGLVH 480 (564)
T ss_pred CcccccchhHHHHHHHHhCC--------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcccccH
Confidence 45899999999999999975 67899999999999 677789999999998888888888898754
Q ss_pred ccc----------c--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DTE----------I--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~~----------~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
..+ . ....|+.+.+++||.++++| ++.+++.++++++.+ .++|++|++.+.+
T Consensus 481 ~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIeV~~~~ 544 (564)
T PRK08155 481 QQQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDL----NNEADPQAALQEAIN-RPGPALIHVRIDA 544 (564)
T ss_pred HHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 211 1 12368999999999999999 489999999999987 7899999999964
No 122
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.34 E-value=3.3e-12 Score=149.25 Aligned_cols=116 Identities=20% Similarity=0.286 Sum_probs=98.2
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++|+.+++|+||++|++..
T Consensus 410 ~~g~mG~~l~aaiGa~la~~--------------~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~ 473 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAKP--------------ESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRYLGMVR 473 (558)
T ss_pred ccccccchhhHHHhhhhhCC--------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHH
Confidence 45889999999999999864 67899999999999 677789999999998888888888887532
Q ss_pred cc------------cccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT------------EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~------------~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. ......|+.+++++||+++.+| ++.+++.++++++.+ .++|++|++++.+
T Consensus 474 ~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v----~~~~~l~~al~~a~~-~~~p~liev~~~~ 537 (558)
T TIGR00118 474 QWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRI----EKPEELDEKLKEALS-SNEPVLLDVVVDK 537 (558)
T ss_pred HHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 10 1112368999999999999999 489999999999987 6899999999975
No 123
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.34 E-value=3.6e-12 Score=149.68 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=99.4
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|||++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 417 ~~gsmG~~lpaaiGa~la~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~ 480 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAKP--------------DANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLGMVY 480 (586)
T ss_pred CccccccchhHHHhhhhhcC--------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHH
Confidence 34899999999999999865 67899999999999 888899999999999899999999887532
Q ss_pred cc---------c-c--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT---------E-I--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~---------~-~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. . . ....|+.+.+++||.++.+| ++.++|.++|+++.+ .++|++|+|.+..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIeV~i~~ 544 (586)
T PRK06276 481 QWQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRV----EKPDEIKEALKEAIK-SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEecc
Confidence 11 1 1 12468999999999999999 599999999999987 7899999999964
No 124
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.34 E-value=5e-12 Score=148.03 Aligned_cols=116 Identities=28% Similarity=0.340 Sum_probs=97.2
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCC--cc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SI 274 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~--~i 274 (748)
..|+||+|+|.|+|+++| + +++|+|++|||+|+ |...+|.+|.+++|+.++||+||+++ ..
T Consensus 422 ~~gsmG~glpaaiGa~la-~--------------~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~ 484 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVE-T--------------GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIYRGD 484 (569)
T ss_pred CCccccccHHHHHHHHhc-C--------------CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHHHHH
Confidence 458999999999999998 3 56799999999999 88899999999999888888888875 11
Q ss_pred c----c--cc---cccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 275 D----G--DT---EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 275 ~----~--~~---~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
. . .. ......|+.+++++||+++.+| ++.++|.+++++|.+ .++|++|+|.+.+-
T Consensus 485 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIev~id~~ 548 (569)
T PRK09259 485 DVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNV----TTPDELRHALTEAIA-SGKPTLINVVIDPA 548 (569)
T ss_pred HHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHh-CCCCEEEEEEECCC
Confidence 1 1 11 1112468999999999999999 599999999999987 78999999999753
No 125
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.34 E-value=5.4e-12 Score=147.31 Aligned_cols=116 Identities=24% Similarity=0.292 Sum_probs=97.3
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccc-
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID- 275 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~- 275 (748)
..|+||+|+|.|+|+++| + +++|+|++|||+|+ |+.++|.+|.+++|+.++||+||++|...
T Consensus 415 ~~gsmG~~lpaaiGaala-~--------------~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~ 477 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVE-T--------------GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYRGD 477 (554)
T ss_pred CCCcCCchHHHHHHHHhc-C--------------CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhhhh
Confidence 348999999999999997 2 56899999999999 88889999999999988889988876221
Q ss_pred -----c--cc--cccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 276 -----G--DT--EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 276 -----~--~~--~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
+ .. ......|+.+++++||++..+| ++.++|.+++++|.+ .++|++|+|.+.+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v----~~~~el~~al~~a~~-~~~p~lIev~id~~ 540 (554)
T TIGR03254 478 DVNVVGADPAPTVLVHGARYDKMMKAFGGVGYNV----TTPDELKAALNEALA-SGKPTLINAVIDPS 540 (554)
T ss_pred hhhhcCCCCCccccCCCCCHHHHHHHCCCeEEEe----CCHHHHHHHHHHHHh-CCCCEEEEEEECCC
Confidence 0 01 1113468999999999999999 599999999999987 78999999998753
No 126
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.33 E-value=3.6e-12 Score=149.10 Aligned_cols=115 Identities=16% Similarity=0.249 Sum_probs=98.7
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|+++|.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 416 ~~g~mG~glpaaiGa~lA~p--------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~ 479 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIANP--------------DKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLGMVR 479 (566)
T ss_pred ccccccchhhHhheeheecC--------------CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCchHHH
Confidence 45899999999999999975 77899999999999 888999999999999999999999998643
Q ss_pred cc----------cc--cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT----------EI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~----------~~--~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. .. ....|+.+++++||.+..+| ++.++|.++++. .. .++|+||++.+.+
T Consensus 480 ~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~-~~-~~~p~lIeV~v~~ 542 (566)
T PRK07282 480 QWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKF----DNPETLAQDLEV-IT-EDVPMLIEVDISR 542 (566)
T ss_pred HHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEE----CCHHHHHHHHHH-hc-CCCCEEEEEEeCC
Confidence 11 11 12468999999999999999 589999999974 44 6899999999975
No 127
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.32 E-value=5.7e-12 Score=148.08 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=99.8
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+|+|.|+|+++|.+ +++|+|++|||+|+ +...+|.+|.+++|+.++||+||++|++..
T Consensus 433 ~~g~mG~glp~aiGa~la~p--------------~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~ 496 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIACP--------------DRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQWGAEK 496 (588)
T ss_pred cccccccHHHHHHHHHHhCC--------------CCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 45899999999999999875 67899999999999 777889999999999888999999997532
Q ss_pred ccc------------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhc--CCCCEEEEEEeeecc
Q 004509 277 DTE------------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV--TDKPTLIRVTTTIGF 335 (748)
Q Consensus 277 ~~~------------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~--~~~P~vI~~~T~kg~ 335 (748)
..+ .....|+.+++++||.++.+| ++.++|.++++++.+. .++|+||+|.+.+..
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~el~~al~~a~~~~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 497 KNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVV----DTQEELGPALKRAIDAQNEGKTTVIEIMCNQEL 565 (588)
T ss_pred HHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 110 112358999999999999999 4899999999999873 258999999997543
No 128
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.32 E-value=6.2e-12 Score=146.00 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=98.0
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|+||+|+|.|+|+++|. ++++++++|||+|+ |...+|.+|.+++|+.++||+||++|.+...
T Consensus 402 ~g~mG~glpaaiGa~lA~---------------~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~ 464 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS---------------GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRV 464 (535)
T ss_pred cchhhhHHHHHHHHHhCC---------------CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeeh
Confidence 489999999999999984 24568899999999 9999999999999999999999999987543
Q ss_pred cc------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 278 TE------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 278 ~~------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.+ .....|+.+.+++||.+..+| ++.++|.++++++.+..++|++|++.+.+
T Consensus 465 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v----~~~~eL~~al~~a~~~~~~p~lIev~i~~ 522 (535)
T TIGR03394 465 FQPESAFNDLDDWRFADMAAGMGGDGVRV----RTRAELAAALDKAFATRGRFQLIEAMLPR 522 (535)
T ss_pred hccCCCcccCCCCCHHHHHHHcCCCceEe----CCHHHHHHHHHHHHhcCCCeEEEEEECCc
Confidence 21 112468999999999999999 48999999999998734568999999864
No 129
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.32 E-value=6.1e-11 Score=139.27 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=162.8
Q ss_pred ccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhc--cCCCeEEEEecCCCccCCCCCCCCChhhhHHH
Q 004509 490 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 567 (748)
Q Consensus 490 d~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~--~~~pVi~v~t~~g~~~g~dG~THq~~edia~l 567 (748)
.....|...+.+|.|-|..|. |.++.|=..=+.+|.|++...++ +.+|++++.. ++. |. ++|+..+.|..+.
T Consensus 50 ~~~~~E~~a~~~~~GAs~aG~--ra~t~ts~~Gl~~~~e~l~~~~~~g~~~~iV~~~~-~~~--gp-~~~~~~q~d~~~~ 123 (595)
T TIGR03336 50 EWSVNEKVAVEVAAGAAWSGL--RAFCTMKHVGLNVAADPLMTLAYTGVKGGLVVVVA-DDP--SM-HSSQNEQDTRHYA 123 (595)
T ss_pred EECcCHHHHHHHHHHHHhcCc--ceEEEccCCchhhhHHHhhhhhhhcCcCceEEEEc-cCC--CC-ccchhhHhHHHHH
Confidence 444589999999999999995 99998877777889999877653 4778887764 332 32 5787777887766
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCC--CCCCC-CCc--cccccc-----------
Q 004509 568 RAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKL--PHLAG-TSI--DGVEKG----------- 622 (748)
Q Consensus 568 r~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~r------~~~--~~~~~-~~~--~~~~~G----------- 622 (748)
+. -++.|+.|+|..|+..+...|++- ..-|+++++.. +.+ +..+. ... ...+..
T Consensus 124 ~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (595)
T TIGR03336 124 KF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARV 202 (595)
T ss_pred Hh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHH
Confidence 65 478899999999999999888742 46799998631 111 10000 000 000000
Q ss_pred -------------------eeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhh
Q 004509 623 -------------------AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 683 (748)
Q Consensus 623 -------------------~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~ 683 (748)
.+..... .+.|++||++|+++..++++.+.| |+++.|+++++++|||.+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~--- 273 (595)
T TIGR03336 203 RHKKLLSKQHKLREELNESPLNRLEI---NGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVE--- 273 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceecc---CCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHH---
Confidence 0111111 257999999999999999987664 999999999999999998763
Q ss_pred hhccCCCceEEEEccccccCcchhh----c---CCccEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 004509 684 SVLPAAVSARVSIEAGSTFGWEKIV----G---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 746 (748)
Q Consensus 684 ~v~~~~~~~vv~vE~~~~~G~~~~v----~---~~~~~ig~-d~f~~~G~~~~l~~~~gl~~e~I~~~i~~ 746 (748)
.+++.. ..|||+|++.. +++..+ . .++.++|+ |.|++ +..+||++.|.+++++
T Consensus 274 ~~~~~~-~~vivvEe~~~-~~~~~~~~~~~~~~~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~ 334 (595)
T TIGR03336 274 EFLSGV-EEVLVVEELEP-VVEEQVKALAGTAGLNIKVHGKEDGFLP--------REGELNPDIVVNALAK 334 (595)
T ss_pred HHHhcC-CeEEEEeCCcc-HHHHHHHHHHHhcCCCeEEecccCCccC--------cccCcCHHHHHHHHHH
Confidence 344433 34799999983 333221 1 14578888 68887 5789999999999875
No 130
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.32 E-value=8.4e-12 Score=129.81 Aligned_cols=122 Identities=19% Similarity=0.149 Sum_probs=93.0
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+|+|.|+|.+++.-.. .. .+++|||++|||++.. +...++.++.+++++.+++|+||+.|++.+
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~----~~-----p~~~Vv~i~GDG~~~~-~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~ 131 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRE----LD-----KKKDVVVIGGDGATYD-IGFGALSHSLFRGEDITVIVLDNEVYSNTG 131 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccc----cC-----CCCcEEEEeCchHHHh-ccHHHHHHHHHcCCCeEEEEECCccccCCC
Confidence 3499999999999999882110 01 2788999999999841 134467888889998888888888887653
Q ss_pred ccc-----------------ccccccHHHHHhhCCcEEEE---EccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 277 DTE-----------------IAFTENVDKRFEGLGWHVIW---VKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~-----------------~~~~~~~~~~~~a~G~~~~~---v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
... .....|+.+.+++||+.+++ | .+++++.++|++|.+..++|++|++.+.
T Consensus 132 ~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v----~~~~~l~~al~~al~~~~GP~lI~v~i~ 203 (237)
T cd02018 132 GQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSP----ALKKHFLKVVKEAISRTDGPTFIHAYTP 203 (237)
T ss_pred CCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEcc----CCHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 111 01236899999999999986 6 3899999999999842578999999964
No 131
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.32 E-value=5.2e-12 Score=149.02 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=100.3
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|+||+|+|.|+|++++.+ +++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++..
T Consensus 445 ~~G~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~ 508 (612)
T PRK07789 445 GLGTMGYAVPAAMGAKVGRP--------------DKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNLGMVR 508 (612)
T ss_pred CcccccchhhhHHhhhccCC--------------CCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCchHHHH
Confidence 45899999999999999975 67899999999999 889999999999999999999999998643
Q ss_pred cc------------ccc----ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 277 DT------------EIA----FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 277 ~~------------~~~----~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. ... ...|+.+.+++||..+.+| ++.++|.++|++|.+..++|+||++.+.+
T Consensus 509 ~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V----~~~~eL~~al~~a~~~~~~p~lIev~i~~ 577 (612)
T PRK07789 509 QWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC----EREEDVDAVIEKARAINDRPVVIDFVVGK 577 (612)
T ss_pred HHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEE----CCHHHHHHHHHHHHhcCCCcEEEEEEECC
Confidence 11 000 1258999999999999999 59999999999998733799999999975
No 132
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.31 E-value=4e-12 Score=148.85 Aligned_cols=114 Identities=17% Similarity=0.105 Sum_probs=97.2
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|++|+++|.|+|+++| + +++|+|++|||+|+ +...++.+|.+++|+.++||+||++|++.+.
T Consensus 424 ~~~~G~~lpaaiGaala-~--------------~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~ 486 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-S--------------AKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGIFSL 486 (568)
T ss_pred ccchhhHHHHHHHHHhc-C--------------CCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCccccC
Confidence 47799999999999998 5 56799999999999 7778899999999999999999999885432
Q ss_pred cc-------------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 278 TE-------------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 278 ~~-------------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
.. .....|+.+.+++||+++.+| ++.++|.++++++.+ .++|++|+|.+.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V----~~~~eL~~al~~a~~-~~~p~lIev~id~ 550 (568)
T PRK07449 487 LPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRP----ETWAELEEALADALP-TPGLTVIEVKTNR 550 (568)
T ss_pred CCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCC----CCHHHHHHHHHHHhc-CCCCEEEEEeCCh
Confidence 10 112468999999999999999 499999999999987 7899999999853
No 133
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.30 E-value=6.8e-12 Score=146.83 Aligned_cols=118 Identities=21% Similarity=0.305 Sum_probs=96.3
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+.+..-+++++|.+++|+.++||+||++|++..
T Consensus 428 ~~gsmG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~ 493 (569)
T PRK08327 428 SAGGLGWALGAALGAKLATP--------------DRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVK 493 (569)
T ss_pred CCCCCCcchHHHHHHhhcCC--------------CCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccch
Confidence 45899999999999999864 7899999999999966544579999999998888888888887642
Q ss_pred c----------------c-ccc--ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhc---CCCCEEEEEEee
Q 004509 277 D----------------T-EIA--FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV---TDKPTLIRVTTT 332 (748)
Q Consensus 277 ~----------------~-~~~--~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~---~~~P~vI~~~T~ 332 (748)
. . ... ...|+.+++++||+.+.+| ++.+++.++++++.+. .++|++|++.+.
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v----~~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 494 EAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERV----EDPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred hHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEe----CCHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 1 0 111 2468999999999999999 4899999999998762 268999999863
No 134
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.29 E-value=1.4e-11 Score=130.41 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=92.3
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccc
Q 004509 200 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE 279 (748)
Q Consensus 200 ~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~ 279 (748)
++|.++|.|+|+++|.+ +++|||++|||+++. +....+.+|++++++.+++|+||+.|++.+...
T Consensus 69 ~~G~alPaAiGaklA~P--------------dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~ 133 (277)
T PRK09628 69 THGRAVAYATGIKLANP--------------DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQT 133 (277)
T ss_pred ccccHHHHHHHHHHHCC--------------CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecc
Confidence 67899999999999975 788999999999862 344567789999999899999999888744111
Q ss_pred --------------c-c--ccccHHHHHhhCCcEEE---EEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 280 --------------I-A--FTENVDKRFEGLGWHVI---WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 280 --------------~-~--~~~~~~~~~~a~G~~~~---~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
. . ...|+.+.+++||+.++ .| ++++++.+++++|.+ .++|++|++.+.
T Consensus 134 ~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v----~~~~el~~al~~Al~-~~Gp~lIeV~~~ 201 (277)
T PRK09628 134 SPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESV----IDPQKLEKLLVKGFS-HKGFSFFDVFSN 201 (277)
T ss_pred cCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc----CCHHHHHHHHHHHHh-CCCCEEEEEcCC
Confidence 0 0 12367999999999985 66 489999999999998 789999999875
No 135
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.26 E-value=2.7e-10 Score=125.09 Aligned_cols=203 Identities=16% Similarity=0.118 Sum_probs=147.1
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 485 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 485 p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
...|++ .-.|...+++|.|.|..|. |.++.|=.+.+.+++++|-..+...+|++++... +.+.+. |.|+..+.|+
T Consensus 48 ~~~~vq-~E~E~aA~~~a~GAs~aG~--Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~-R~~p~~-g~t~~eq~D~ 122 (352)
T PRK07119 48 GGVFVQ-AESEVAAINMVYGAAATGK--RVMTSSSSPGISLKQEGISYLAGAELPCVIVNIM-RGGPGL-GNIQPSQGDY 122 (352)
T ss_pred CCEEEe-eCcHHHHHHHHHHHHhhCC--CEEeecCcchHHHHHHHHHHHHHccCCEEEEEec-cCCCCC-CCCcchhHHH
Confidence 345666 6899999999999999995 9999998889999999999999999998877643 434333 5577777787
Q ss_pred HHHhc-----CCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc------CCCC--CCC---CCCCccccccce--
Q 004509 565 ASFRA-----MPNILMLRPADGNETAGAYKVAVAN---RKRPSILALS------RQKL--PHL---AGTSIDGVEKGA-- 623 (748)
Q Consensus 565 a~lr~-----iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~------r~~~--~~~---~~~~~~~~~~G~-- 623 (748)
-+.+. --++.|+.|+|+.|+..+...|++- ..-|++++.. ++.+ |.. ..........|.
T Consensus 123 ~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~ 202 (352)
T PRK07119 123 FQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKG 202 (352)
T ss_pred HHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCC
Confidence 65542 2248999999999999999888742 4569999863 2221 110 000000000110
Q ss_pred --------------------------e----------EEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEe
Q 004509 624 --------------------------Y----------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 667 (748)
Q Consensus 624 --------------------------~----------~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId 667 (748)
+ ..... .+.|++||++|+++..|++|++.|+++|+++.||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~---~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~ 279 (352)
T PRK07119 203 RRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNT---EDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFR 279 (352)
T ss_pred CceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecC---CCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEe
Confidence 0 00111 25789999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhhhccCCCceEEEEccc
Q 004509 668 FVSWELFDEQSDAYKESVLPAAVSARVSIEAG 699 (748)
Q Consensus 668 ~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~ 699 (748)
+++++|||.+.+. ..++.. +.|+|+|..
T Consensus 280 ~~~l~Pfp~~~i~---~~l~~~-k~VivvE~n 307 (352)
T PRK07119 280 PITLWPFPEKALE---ELADKG-KGFLSVEMS 307 (352)
T ss_pred eceecCCCHHHHH---HHHhCC-CEEEEEeCC
Confidence 9999999998763 334433 346999997
No 136
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.24 E-value=3.3e-11 Score=128.87 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=94.0
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccc
Q 004509 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (748)
Q Consensus 199 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~ 278 (748)
|.+|.++|+|+|+++|.+ +++|||+.|||++. ++....|.+|++++++.+++|+||+.|++.+..
T Consensus 70 g~mG~alpaAiGaklA~p--------------d~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ 134 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP--------------DLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQ 134 (301)
T ss_pred hhhccHHHHHHHHHHHCC--------------CCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhcccCc
Confidence 678999999999999975 78899999999972 355678999999999988999999988765421
Q ss_pred c-----------c------cccccHHHHHhhCCcEEE---EEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 279 E-----------I------AFTENVDKRFEGLGWHVI---WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 279 ~-----------~------~~~~~~~~~~~a~G~~~~---~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
. . ....|+.+.++++|+.++ .+ .+.+++.++|++|.+ .++|++|++.+.
T Consensus 135 ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v----~~~~eL~~ai~~A~~-~~GpalIeV~~~ 203 (301)
T PRK05778 135 ASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFA----GDVKQLVELIKKAIS-HKGFAFIDVLSP 203 (301)
T ss_pred ccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEecc----CCHHHHHHHHHHHHh-CCCCEEEEEcCC
Confidence 1 0 023588999999999987 45 389999999999997 789999998764
No 137
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.23 E-value=3.5e-11 Score=127.24 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=94.3
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH-HHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA-NEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 199 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~-~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
+.+|.++|.|+|+++|.+ ++.|||++|||++. +. .++|.+|++++++.+++|+||+.|++.+.
T Consensus 60 ~~mG~alp~AiGaklA~p--------------d~~VVai~GDG~~~--~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~ 123 (280)
T PRK11869 60 TLHGRAIPAATAVKATNP--------------ELTVIAEGGDGDMY--AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKG 123 (280)
T ss_pred cccccHHHHHHHHHHHCC--------------CCcEEEEECchHHh--hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcc
Confidence 448999999999999865 67899999999987 44 77899999999988888888888875431
Q ss_pred cc-----------------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 278 TE-----------------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 278 ~~-----------------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
.. .....|+.+.++++|..++...+-. +++++.+++++|.+ .++|++|++.+.
T Consensus 124 Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~-~~~~l~~~i~~Al~-~~Gp~lIeV~~p 193 (280)
T PRK11869 124 QASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSG-DIEETKEILKEAIK-HKGLAIVDIFQP 193 (280)
T ss_pred eecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCC-CHHHHHHHHHHHHh-CCCCEEEEEECC
Confidence 11 0123589999999999998832223 89999999999998 789999999875
No 138
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.22 E-value=5.6e-11 Score=125.76 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=96.1
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcch-hcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG-~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
.|.+|.++|.|+|+++|.+ +.+||+++||| +++ +....|.+|.+++++.+++|+||+.|++.+
T Consensus 58 ~~~~G~alp~A~GaklA~P--------------d~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~i~vIV~nN~~ygmtg 121 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANP--------------KLTVIGYGGDGDGYG--IGLGHLPHAARRNVDITYIVSNNQVYGLTT 121 (279)
T ss_pred ccccccHHHHHHHHHHHCC--------------CCcEEEEECChHHHH--ccHHHHHHHHHHCcCcEEEEEEChhhhhhc
Confidence 3668999999999999975 67899999999 688 667789999999998888888888887755
Q ss_pred ccc-c----------c------ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 277 DTE-I----------A------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~-~----------~------~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
... . . ...|+.+.++++|..++...... +++++.+++++|.+ .++|++|++.+.
T Consensus 122 gQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~-~~~~l~~~l~~Al~-~~Gps~I~v~~p 192 (279)
T PRK11866 122 GQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSG-DVKHLKEIIKEAIK-HKGFSFIDVLSP 192 (279)
T ss_pred ccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCC-CHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 211 0 0 01288999999999877654555 89999999999998 789999999864
No 139
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.18 E-value=5.5e-11 Score=131.10 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=97.6
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
.|++|+.+|+|+|.++|.+ ++|++.++|||++| ++.+++.+.-+|+|+|++||+||++|.|...
T Consensus 410 WGSIG~t~pAalGa~~A~~--------------drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYTIEr~ 473 (557)
T COG3961 410 WGSIGYTLPAALGAALAAP--------------DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYTIERA 473 (557)
T ss_pred hhhcccccHhhhhhhhcCC--------------CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcEEEeh
Confidence 5999999999999999986 89999999999999 9999999999999999999999999998765
Q ss_pred ccc-------cccccHHHHHhhCC---cEE-EEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 278 TEI-------AFTENVDKRFEGLG---WHV-IWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 278 ~~~-------~~~~~~~~~~~a~G---~~~-~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
... ....|..++.++|| ++. ..+ +.-+++..+++.+.+..+++++|||++.+
T Consensus 474 IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~i~lIEv~lp~ 536 (557)
T COG3961 474 IHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRA----TTGEELALALDVAFANNDRIRLIEVMLPV 536 (557)
T ss_pred hcCCCcCcccccccchhhhhhhcCCCCceEEEee----cChHHHHHHHHHHhcCCCceEEEEEecCc
Confidence 532 23456777888876 455 333 36788889999888766799999999754
No 140
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.18 E-value=1.1e-10 Score=124.46 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=93.6
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchh-cchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc
Q 004509 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (748)
Q Consensus 199 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~-~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~ 277 (748)
|.+|.++|.|+|+++|.+ +++|||++|||+ ++ +....|.+|.+++++.+++|+||+.|++.+.
T Consensus 69 g~mG~alpaAiGaklA~P--------------d~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~ 132 (286)
T PRK11867 69 TIHGRALAIATGLKLANP--------------DLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYGLTKG 132 (286)
T ss_pred hhhhcHHHHHHHHHHhCC--------------CCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHhhhcC
Confidence 689999999999999965 788999999995 77 5567899999999999999999998876442
Q ss_pred cc-------c----c------ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 278 TE-------I----A------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 278 ~~-------~----~------~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
.. . . ...++.+.++++|...+....-. +++++.++|++|.+ .++|++|++.+.
T Consensus 133 q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~-~~~el~~al~~Al~-~~Gp~lIev~~~ 202 (286)
T PRK11867 133 QYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDS-DVKQLTELIKAAIN-HKGFSFVEILQP 202 (286)
T ss_pred ccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCC-CHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 11 0 0 12468899999999876421223 89999999999997 789999999864
No 141
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.18 E-value=2.2e-10 Score=110.69 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=99.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHhcCCCCccEEEe-ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCCh
Q 004509 483 TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 561 (748)
Q Consensus 483 ~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~-f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ 561 (748)
+.|++.+..++.|++++++|.|+|+.|+ +|++.+ +.+|+.++++||+..+..++||+++.++.+.. +.++.+||.+
T Consensus 32 ~~~~~~~~~~~~E~~a~~~A~G~a~~~~--~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~~~~~~-~~~~~~~q~~ 108 (154)
T cd06586 32 EGDKRIIDTVIHELGAAGAAAGYARAGG--PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGIS-AQAKQTFQSM 108 (154)
T ss_pred ccCCceEEeeCCHHHHHHHHHHHHHhhC--CEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeCCCChh-hhccCccccc
Confidence 3579999999999999999999999994 888765 69999999999998788899999998665543 4457789999
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHH---HHHcCCCcEEEEEcC
Q 004509 562 EHLASFRAMPNILMLRPADGNETAGAYKV---AVANRKRPSILALSR 605 (748)
Q Consensus 562 edia~lr~iPnl~V~~Psd~~e~~~~l~~---a~~~~~~P~~irl~r 605 (748)
+++++++.+|++.+..|++.++...+.+. +.. ..+|++|++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~-~~gPv~l~ip~ 154 (154)
T cd06586 109 FDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYA-SQGPVVVRLPR 154 (154)
T ss_pred CHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEccC
Confidence 99999999999999999887766555433 333 47899999874
No 142
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.16 E-value=1.1e-10 Score=123.78 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=91.6
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccc
Q 004509 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (748)
Q Consensus 199 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~ 278 (748)
+.+|.++|+|+|+++|.+ ++.|||++|||++ .++....|.+|.+++++.+++|+||+.|++.+..
T Consensus 53 t~mG~alPaAiGaklA~P--------------d~~VVai~GDG~f-~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ 117 (287)
T TIGR02177 53 GLHGRALPVATGIKLANP--------------HLKVIVVGGDGDL-YGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQ 117 (287)
T ss_pred cccccHHHHHHHHHHHCC--------------CCcEEEEeCchHH-HhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcc
Confidence 457999999999999975 7889999999997 2466778999999999888888888888765422
Q ss_pred cc--------c-----------ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 279 EI--------A-----------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 279 ~~--------~-----------~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
.. . ...++.++++++|+...... .+++++.++|++|.+ .++|++|++.+.
T Consensus 118 ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~---~~~~eL~~ai~~Al~-~~GpslIeV~~p 186 (287)
T TIGR02177 118 ASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS---GDVAHLKEIIKEAIN-HKGYALVDILQP 186 (287)
T ss_pred cccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec---CCHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 10 0 12245677888888877732 389999999999998 789999999864
No 143
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.13 E-value=2.8e-09 Score=118.10 Aligned_cols=202 Identities=21% Similarity=0.182 Sum_probs=145.8
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhH
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 565 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia 565 (748)
..|+.+- .|...+++|.|.|..|. |.++.|=++=+.+|.+++-..+..++|++++.. .+.+.+..-+|+..+.|+-
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~--Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~-~R~gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGA--KAMTATSGPGFSLMQENIGYAAMTETPCVIVNV-QRGGPSTGQPTKPAQGDMM 124 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCC--CeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEe-ecCCCCCCCCCCcCcHHHH
Confidence 4566665 99999999999999995 999988788888999999888888999888764 4444333347787777876
Q ss_pred HHh-----cCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc------CCCC--CC---CC-------C---C--
Q 004509 566 SFR-----AMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALS------RQKL--PH---LA-------G---T-- 614 (748)
Q Consensus 566 ~lr-----~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~------r~~~--~~---~~-------~---~-- 614 (748)
..| .. ++.|+.|+|..|+..+...|++- ..-|++++.. +..+ |+ +. . .
T Consensus 125 ~~~~~~hgd~-~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (376)
T PRK08659 125 QARWGTHGDH-PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAY 203 (376)
T ss_pred HHhcccCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcccc
Confidence 666 22 36899999999999998888742 4569999852 1111 00 00 0 0
Q ss_pred -Cc----cccc----cc--ee------------------------------------------EEecCCCCCCCCEEEEE
Q 004509 615 -SI----DGVE----KG--AY------------------------------------------IISDNSSGNKPDVILIG 641 (748)
Q Consensus 615 -~~----~~~~----~G--~~------------------------------------------~v~~~~~~~g~dvtlva 641 (748)
+. ..++ .| .. ...+ ..+.|++||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~---~~~ad~~iv~ 280 (376)
T PRK08659 204 KPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYM---LEDAEVVVVA 280 (376)
T ss_pred CCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeec---CCCCCEEEEE
Confidence 00 0000 01 11 0001 0257899999
Q ss_pred eChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccc
Q 004509 642 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 699 (748)
Q Consensus 642 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~ 699 (748)
+|++...+++|++.|+++|+++.++++++++||+.+.+. ..++. ++.|+|+|++
T Consensus 281 ~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~---~~~~~-~k~VivvEe~ 334 (376)
T PRK08659 281 YGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIR---ELAKK-VKAIVVPEMN 334 (376)
T ss_pred eCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHH---HHHhc-CCEEEEEeCC
Confidence 999999999999999999999999999999999998653 44443 3447999999
No 144
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.12 E-value=1.9e-10 Score=135.17 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=97.4
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhH-HHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA-NEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~-~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
.|.||.++|.|+|+++|.+ +++|++++|||+|+ +. ..+|.+|.+++++.+++|+||+.|++.+
T Consensus 402 ~~~mG~~~~~AiGa~~a~p--------------~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAGE--------------KQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAMTG 465 (595)
T ss_pred eeccCchHHHHhhhhhcCC--------------CCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceeccC
Confidence 5899999999999999865 67899999999999 65 6789999999998888899999888765
Q ss_pred cccc-----------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 277 DTEI-----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 277 ~~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
.... ....|+.+.+++||++..+|.+-. |++++.++++++.+ .++|++|+++.
T Consensus 466 ~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~-~l~~l~~al~~a~~-~~gp~li~v~~ 529 (595)
T TIGR03336 466 HQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPL-NVKETIEVFKAALA-AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcC-CHHHHHHHHHHHHh-cCCCEEEEEcc
Confidence 3211 023589999999999999995544 77888999999997 78999999875
No 145
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.10 E-value=4e-08 Score=108.13 Aligned_cols=538 Identities=17% Similarity=0.200 Sum_probs=292.5
Q ss_pred HHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCCCCCCCccccc
Q 004509 118 APMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVT 197 (748)
Q Consensus 118 ~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l~~~r~~~s~~~Ghp~~~~~pgi~~~ 197 (748)
+|-+.+.|+..|+-... .+-..+|+.-.|..-.- .+++...++.+ ..||++.|.+ -+|+..+-.|+-.+
T Consensus 191 AESM~aFF~eLl~~sa~----~~ie~viigmpHRGRln----Llt~Ll~fpP~--~mFRK~~G~s-EFpE~~~A~gDVlS 259 (913)
T KOG0451|consen 191 AESMLAFFWELLRDSAQ----ANIEHVIIGMPHRGRLN----LLTALLNFPPA--KMFRKLSGAS-EFPEDIEAMGDVLS 259 (913)
T ss_pred HHHHHHHHHHHHHHHHh----cCcceEEEeccccCcch----HHHHHhcCCHH--HHHHHhcCcc-cCchhhhHHHHHHH
Confidence 45556666666663221 13355899999986221 12222111443 3688887765 36654222221111
Q ss_pred ----------------------cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCc-----CCcEE--EEEEcchhcc-hhh
Q 004509 198 ----------------------TGPLGQGMANAVGLALAEKHLAARYNKPDNEI-----VDHYT--YVILGDGCQM-EGI 247 (748)
Q Consensus 198 ----------------------tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~-----~~~~v--~~iiGDG~~~-eG~ 247 (748)
-.+|-.-=|.|+|-+-++.... ++.++.. ...+| +.+-|||+|. +|+
T Consensus 260 Hl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr---~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGi 336 (913)
T KOG0451|consen 260 HLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSR---GEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGI 336 (913)
T ss_pred HhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhh---cCCCCCCCCcCCCCCceEEEEEecchhhccCcc
Confidence 1223333477888877655332 2222211 12344 4456999986 499
Q ss_pred HHHHHHHHH--HcCCCcEEEEEECCCCcccccccccc-cccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cC
Q 004509 248 ANEASSLAG--HLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VT 321 (748)
Q Consensus 248 ~~Eal~~A~--~~~L~~li~Ivd~N~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~ 321 (748)
+||.++++- +.++.--+-++-||+.+..++.+... ..--.+.+++++..++.| +|. |++++.+|-+-|.+ +-
T Consensus 337 v~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHV-NGD-~PEevvraTrLAf~Yqr~F 414 (913)
T KOG0451|consen 337 VQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHV-NGD-DPEEVVRATRLAFRYQREF 414 (913)
T ss_pred cHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEe-CCC-CHHHHHHHHHHHHHHHHHh
Confidence 999988764 66666667777789888776654321 111244677889999999 999 99999999887755 23
Q ss_pred CCCEEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 004509 322 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAE 400 (748)
Q Consensus 322 ~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~-~~~~g~~~~~~~~~~~~~ 400 (748)
.|-++|...+.|.+||...+++. +- .|.--++++ .+ +.+.+.|.+ ++++|-..+.+-.+...+
T Consensus 415 RKDvfIdL~CfRrwgHnelddp~-ft-spvmyk~v~---aR-----------eSvPdlya~~L~~eg~~tee~vkE~~~~ 478 (913)
T KOG0451|consen 415 RKDVFIDLNCFRRWGHNELDDPT-FT-SPVMYKEVE---AR-----------ESVPDLYAQQLAKEGVLTEEKVKEMRDE 478 (913)
T ss_pred hhhheeehHHHHHhccccccCcc-cc-ChhHHHHHH---hh-----------hcccHHHHHHHHhcccccHHHHHHHHHH
Confidence 67899999999999998765432 21 111112222 22 112345554 556665555544444444
Q ss_pred HHhhCHHHHHHHHHHhcCCCCC------------------cccccCC---------------C-CC--------------
Q 004509 401 YEKKYPEEAAEFKSISSGQLPA------------------GWEKALP---------------T-YT-------------- 432 (748)
Q Consensus 401 ~~~~~p~~~~~~~~~l~~~~p~------------------~~~~~~p---------------~-~~-------------- 432 (748)
|.+.. ..++...-.-..|+ .|...++ . +.
T Consensus 479 y~~~L---n~eL~~~~~y~Pp~~~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm 555 (913)
T KOG0451|consen 479 YMKYL---NEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRM 555 (913)
T ss_pred HHHHH---HHHHhcCCccCCCchhhHHhhhhhccChhhhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHH
Confidence 43321 11111100000111 1221111 0 00
Q ss_pred ---CCCcchhHHHHHHHHHHHHHHhCCCEEEEecCCCCCccccc------cc-------ccccccc-CCCCCccccccch
Q 004509 433 ---PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLL------KM-------FGDFQKD-TPEERNVRFGVRE 495 (748)
Q Consensus 433 ---~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~------k~-------~~~f~~~-~~p~R~id~GIaE 495 (748)
....+.....|=.-++-.++.+--+|.+-+.|++..+..-. .. +.....+ +--=-+-|..++|
T Consensus 556 ~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSE 635 (913)
T KOG0451|consen 556 KKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSE 635 (913)
T ss_pred HHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccH
Confidence 00012222333344566777788889999999986543210 00 0001000 0001234778999
Q ss_pred HHHHHHHHHHHhcCCCCccEEE-eehhHHHHHHHHHHH-----hh----ccCCCeEEEEecCCCccCCCCCCCCChhhhH
Q 004509 496 HGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRI-----SA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 565 (748)
Q Consensus 496 ~~~vg~AaGlA~~G~~~~Piv~-~f~~F~~r~~dqIr~-----~a----~~~~pVi~v~t~~g~~~g~dG~THq~~edia 565 (748)
.++.|+--||+.......|+.. .|.+|..-+ ||-. ++ +....+++... .|+. | -||-|.+---.-
T Consensus 636 EAvLGFEyGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLP-HGyD-G-AgpeHSSCRiER 710 (913)
T KOG0451|consen 636 EAVLGFEYGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLP-HGYD-G-AGPEHSSCRIER 710 (913)
T ss_pred hhhhhhhcccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEcc-CCcC-C-CCCccchhhHHH
Confidence 9999999999998764667775 477776422 4321 11 23445555554 4552 2 478897654445
Q ss_pred HHhc-----------CCCcEEEeeCCHHHHHHHHHH-HHHcCCCcEEEEEcCCCC--CCCCCCCccccc--------cce
Q 004509 566 SFRA-----------MPNILMLRPADGNETAGAYKV-AVANRKRPSILALSRQKL--PHLAGTSIDGVE--------KGA 623 (748)
Q Consensus 566 ~lr~-----------iPnl~V~~Psd~~e~~~~l~~-a~~~~~~P~~irl~r~~~--~~~~~~~~~~~~--------~G~ 623 (748)
+|.. --||.|+-|.++.+...+|+. .+++...|.++.-||--+ |.... ..+.+. +|.
T Consensus 711 FLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~S-T~~ef~PGTtf~nVigd 789 (913)
T KOG0451|consen 711 FLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATS-THEEFQPGTTFHNVIGD 789 (913)
T ss_pred HHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhh-hHhhcCCCccccccccc
Confidence 5432 237999999999999999985 445567788776554322 11000 011222 232
Q ss_pred eEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccC-C-CceEEEEccccc
Q 004509 624 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA-A-VSARVSIEAGST 701 (748)
Q Consensus 624 ~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~-~-~~~vv~vE~~~~ 701 (748)
-....+ .-+-+|+..|--.....+..+.+-.+ -.+.+|-+-++-||..+.+. ..+.+- + ...|..-||+..
T Consensus 790 ~~~~p~----kvkkvifcSGKH~y~l~k~Re~rgak-d~~AI~RvE~LCPFPi~~LQ--a~l~kY~~vqdfvWSQEEprN 862 (913)
T KOG0451|consen 790 TIAKPE----KVKKVIFCSGKHYYTLAKEREKRGAK-DTVAILRVESLCPFPIQELQ--AQLAKYGNVQDFVWSQEEPRN 862 (913)
T ss_pred cccChh----HheEEEEecCcchhhHHHHHHhcccc-cceeeEehhhcCCCchHHHH--HHHHhcCChhhhccccccccc
Confidence 211111 22445666787665555555554222 23778888888888766543 122221 1 134678899887
Q ss_pred cC
Q 004509 702 FG 703 (748)
Q Consensus 702 ~G 703 (748)
.|
T Consensus 863 mG 864 (913)
T KOG0451|consen 863 MG 864 (913)
T ss_pred CC
Confidence 76
No 146
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.06 E-value=1.5e-09 Score=115.52 Aligned_cols=125 Identities=16% Similarity=0.050 Sum_probs=100.5
Q ss_pred ccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcc
Q 004509 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (748)
Q Consensus 195 ~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i 274 (748)
......+|.+++.|.|+++|.+.++. .+..|++++|||++.++-. |+|+.|..+++ |+++||.||++.+
T Consensus 65 ~~i~~~~G~~~~~A~G~a~A~~~~~~---------~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~-~v~~vv~dN~~~~ 133 (300)
T PRK11864 65 PVLHTAFAATAAVASGIEEALKARGE---------KGVIVVGWAGDGGTADIGF-QALSGAAERNH-DILYIMYDNEAYM 133 (300)
T ss_pred cceeehhhChHHHHHHHHHHHHhhCC---------CCcEEEEEEccCccccccH-HHHHHHHHhCc-CEEEEEECCeeee
Confidence 34567899999999999999886541 1356777999999988764 99999999998 7888899997755
Q ss_pred cccccc------------------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 275 DGDTEI------------------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 275 ~~~~~~------------------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
.+..+. ...-|+.+.+.++|..++...+-. |+.++.+++++|.+ .++|.+|++.+.
T Consensus 134 ~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~-~~~~~~~~i~~A~~-~~Gps~I~~~sp 207 (300)
T PRK11864 134 NTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIA-YPEDFIRKLKKAKE-IRGFKFIHLLAP 207 (300)
T ss_pred cCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 433221 123578899999999888665777 99999999999998 889999999865
No 147
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.99 E-value=9.5e-10 Score=142.06 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=96.9
Q ss_pred ccchhhH--hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHc--CCCcEEEEEECCCC
Q 004509 197 TTGPLGQ--GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL--GLGKLIAFYDDNHI 272 (748)
Q Consensus 197 ~tG~lG~--gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~--~L~~li~Ivd~N~~ 272 (748)
.-|.+|. ++|.|+|++++. +++|+|++|||+|+ +...+|.+|.++ +++.++||+||+++
T Consensus 757 ~~G~mG~~G~lpaAIGaala~---------------~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg 819 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC---------------NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG 819 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC---------------CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc
Confidence 4588999 599999999874 35799999999999 999999999985 99888899999987
Q ss_pred cccccc------c---------ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 273 SIDGDT------E---------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 273 ~i~~~~------~---------~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
+|.... + .....|+.+.+++||+++.+| ++.++|.++++++.+ .++|+||+|.|.+
T Consensus 820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV----~~~~eL~~aL~~a~~-~~~p~lIEV~t~~ 890 (1655)
T PLN02980 820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHV----GTKSELEDALFTSQV-EQMDCVVEVESSI 890 (1655)
T ss_pred HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeec----CCHHHHHHHHHHhhc-cCCCEEEEEecCh
Confidence 765421 0 012468999999999999999 599999999999987 7899999999953
No 148
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.99 E-value=2e-08 Score=112.52 Aligned_cols=201 Identities=18% Similarity=0.163 Sum_probs=144.9
Q ss_pred chHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCCc
Q 004509 494 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNI 573 (748)
Q Consensus 494 aE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPnl 573 (748)
.|...+++|.|.|..|. |.+..|=.+=+.+|.|.|...+...+|++++...-+++ + .-++|....|+...| -.++
T Consensus 64 ~E~~A~~~~~GAs~aGa--Ra~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~-~-~~~i~~d~~D~~~~r-~~g~ 138 (407)
T PRK09622 64 SEHAAMSACVGAAAAGG--RVATATSSQGLALMVEVLYQASGMRLPIVLNLVNRALA-A-PLNVNGDHSDMYLSR-DSGW 138 (407)
T ss_pred cHHHHHHHHHHHHhhCc--CEEeecCcchHHHHhhHHHHHHHhhCCEEEEEeccccC-C-CcCCCchHHHHHHHh-cCCe
Confidence 89999999999999995 98888877778899999999999999977776433332 2 267787788887776 4679
Q ss_pred EEEeeCCHHHHHHHHHHHHHc---C--CCcEEEEEcC-------CCCCCCCCC----------Ccc-------ccccce-
Q 004509 574 LMLRPADGNETAGAYKVAVAN---R--KRPSILALSR-------QKLPHLAGT----------SID-------GVEKGA- 623 (748)
Q Consensus 574 ~V~~Psd~~e~~~~l~~a~~~---~--~~P~~irl~r-------~~~~~~~~~----------~~~-------~~~~G~- 623 (748)
.++.|++..|+..+...|.+- . .-|+++++.- +.+.....+ +.. +...|.
T Consensus 139 ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 218 (407)
T PRK09622 139 ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQ 218 (407)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCC
Confidence 999999999999999888753 2 5799987521 111100000 000 000000
Q ss_pred --------------------------------------eEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEE
Q 004509 624 --------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 665 (748)
Q Consensus 624 --------------------------------------~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~V 665 (748)
|...+.-...+.|++||++|+++..+.+|++.|+++|+++.|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgv 298 (407)
T PRK09622 219 TEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGV 298 (407)
T ss_pred CCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEE
Confidence 000000000257899999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHhhhhccCCCceEEEEccccccC
Q 004509 666 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 703 (748)
Q Consensus 666 Id~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G 703 (748)
|++++++|||.+.+. .+++.. +.|+|+|++...|
T Consensus 299 i~~r~~~Pfp~~~l~---~~l~~~-k~VvVvE~~~~~G 332 (407)
T PRK09622 299 ATIRVLRPFPYERLG---QALKNL-KALAILDRSSPAG 332 (407)
T ss_pred EEeeEhhhCCHHHHH---HHHhcC-CEEEEEeCCCCCC
Confidence 999999999998653 344433 4479999997654
No 149
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.98 E-value=2.1e-08 Score=110.90 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=142.1
Q ss_pred chHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHh-----
Q 004509 494 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR----- 568 (748)
Q Consensus 494 aE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr----- 568 (748)
.|...+++|.|.|..|. |.++.|=.+=+.+|.+++-..+..++|++++. ..+.|.+..-||...+.|+...+
T Consensus 55 ~E~aA~~~a~GAs~aG~--Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~-~~R~GpstG~p~~~~q~D~~~~~~~~hg 131 (375)
T PRK09627 55 DEISGISVALGASMSGV--KSMTASSGPGISLKAEQIGLGFIAEIPLVIVN-VMRGGPSTGLPTRVAQGDVNQAKNPTHG 131 (375)
T ss_pred CHHHHHHHHHHHHhhCC--CEEeecCCchHHHHhhHHHHHHhccCCEEEEE-eccCCCcCCCCCccchHHHHHHhcCCCC
Confidence 89999999999999995 99998877878889999998899999988865 24444333347877778887777
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc------CCCC--CC---CC---------CCC---cccccc-
Q 004509 569 AMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALS------RQKL--PH---LA---------GTS---IDGVEK- 621 (748)
Q Consensus 569 ~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~------r~~~--~~---~~---------~~~---~~~~~~- 621 (748)
..|.+ |+.|+|..|+..+...|++- ..-|++++.. +..+ |+ +. ..+ ...+..
T Consensus 132 d~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (375)
T PRK09627 132 DFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVA 210 (375)
T ss_pred CcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccC
Confidence 55666 99999999999998887742 4569998752 2221 10 00 000 000000
Q ss_pred -------------ceeEE--------------------------------------ecCCCCCCCCEEEEEeChhHHHHH
Q 004509 622 -------------GAYII--------------------------------------SDNSSGNKPDVILIGTGSELEIAA 650 (748)
Q Consensus 622 -------------G~~~v--------------------------------------~~~~~~~g~dvtlva~G~~v~~al 650 (748)
+.+.+ .+.-.....|+.||++|+....+.
T Consensus 211 ~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~k 290 (375)
T PRK09627 211 QDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAK 290 (375)
T ss_pred CCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHH
Confidence 00000 000000136799999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcccc
Q 004509 651 KAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS 700 (748)
Q Consensus 651 ~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~ 700 (748)
+|.+.|+++|+++.++.++++.||+.+.+. ..++.. +.|+++|.+.
T Consensus 291 eAv~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~-k~viVvE~n~ 336 (375)
T PRK09627 291 EAIKRLREEGIKVGLFRPITLWPSPAKKLK---EIGDKF-EKILVIELNM 336 (375)
T ss_pred HHHHHHHhcCCeEEEEEeCeEECCCHHHHH---HHHhcC-CEEEEEcCCh
Confidence 999999999999999999999999987542 445433 4469999986
No 150
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.85 E-value=7.3e-09 Score=112.42 Aligned_cols=120 Identities=24% Similarity=0.348 Sum_probs=101.1
Q ss_pred ccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCC
Q 004509 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (748)
Q Consensus 193 gi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~ 272 (748)
+.+++-.-||+-++.++|+.+|.+ ++-||+++|||+++ |..-+|.++..++++..++++||.+|
T Consensus 438 H~EYgfSCMGYEiaG~lG~K~a~p--------------dreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~Gy 501 (617)
T COG3962 438 HLEYGFSCMGYEIAGGLGAKAAEP--------------DREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGY 501 (617)
T ss_pred eeeecccccccccccccccccCCC--------------CCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCc
Confidence 445667779999999999986654 78899999999999 99999999999999777778888888
Q ss_pred cccccccc-------------------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 273 SIDGDTEI-------------------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 273 ~i~~~~~~-------------------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
+...+.+. ....|+++.+++||.++.+| .++++|.+||+.|++ ..++++|+++|..
T Consensus 502 GCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv----~~i~eL~aAL~~Ak~-~~~ttvi~I~t~P 576 (617)
T COG3962 502 GCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKV----GTIEELEAALADAKA-SDRTTVIVIDTDP 576 (617)
T ss_pred chhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEec----CCHHHHHHHHHHHHh-CCCCEEEEEecCC
Confidence 76544321 12357899999999999999 499999999999998 8899999999975
No 151
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.84 E-value=5.8e-09 Score=111.78 Aligned_cols=119 Identities=22% Similarity=0.244 Sum_probs=102.5
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
+.|.||+|||+|+|...|.+ +..|+-+-||++|. |...+|.++.+.+++..|+|+||..+++-.
T Consensus 522 GLGtMGfGLPAAIGAsVA~P--------------~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqGMVt 585 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVANP--------------DAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQGMVT 585 (675)
T ss_pred CccccccCcchhhcccccCc--------------ccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhhhHH
Confidence 67899999999999999876 78999999999999 999999999999998888888888777655
Q ss_pred cccc-----------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccC
Q 004509 277 DTEI-----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 336 (748)
Q Consensus 277 ~~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G 336 (748)
..+. ...+|+.++++++|++..+| +.-++|++.+++... ..+|+++++.+.+-..
T Consensus 586 QWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV----~K~edL~~k~kefls-TkGPvLleV~v~~keh 651 (675)
T KOG4166|consen 586 QWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV----TKKEDLREKIKEFLS-TKGPVLLEVIVPHKEH 651 (675)
T ss_pred HHHHHHHHhhhccccccCccHHHHHHhcCCchhee----ehHHHHHHHHHHHhC-CCCCeEEEEEccCccc
Confidence 4321 23578999999999999999 578999999999987 8899999999876443
No 152
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.80 E-value=1.1e-08 Score=112.69 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=96.1
Q ss_pred cccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCc
Q 004509 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 273 (748)
Q Consensus 194 i~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~ 273 (748)
..+--|++|+.++.++|+|+|.+ +++|+.++|||++| +..+.+.++.+|+|++++|++||++|.
T Consensus 410 ~q~~wgsIG~svga~lG~a~a~~--------------e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYT 473 (561)
T KOG1184|consen 410 SQMQWGSIGWSVGATLGYAQAAP--------------EKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYT 473 (561)
T ss_pred EEEEEeeccccchhhhhhhhccC--------------CceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceE
Confidence 34567999999999999999976 78999999999999 888899999999999999999999999
Q ss_pred ccccccc-----cccccHHHHHhhCCcE-----EEEEccCCCCHHHHHHHHHHHH-hcCCCCEEEEEEee
Q 004509 274 IDGDTEI-----AFTENVDKRFEGLGWH-----VIWVKNGNTGYDDIRAAIKEAK-AVTDKPTLIRVTTT 332 (748)
Q Consensus 274 i~~~~~~-----~~~~~~~~~~~a~G~~-----~~~v~dG~~D~~~l~~al~~a~-~~~~~P~vI~~~T~ 332 (748)
|...... ....|+.+++++||-. ...+ . .-.++.++++.+. +..++|++|||+..
T Consensus 474 IE~~IH~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v---~-~~~e~~~~~~~~~~~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 474 IEVEIHDGPYNDIQNWDYTALLEAFGAGEGKYETHKV---R-TEEELVEAIKDATFEKNDKIRLIEVILP 539 (561)
T ss_pred EEEeecCCCccccccchHHHHHHhhcCccceeEEeee---c-cchHHHHHHhhhhhcccCceEEEEEecC
Confidence 8765532 2346778889998733 3444 2 4567788887776 34578999999854
No 153
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.79 E-value=3.7e-08 Score=107.79 Aligned_cols=126 Identities=26% Similarity=0.310 Sum_probs=97.9
Q ss_pred CCCCCCCCccccccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEE
Q 004509 185 HPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLI 264 (748)
Q Consensus 185 hp~~~~~pgi~~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li 264 (748)
+|.++--+| +.|.||-|++.|++.|++.+ +++|||+-||++|. ...-++.++.+++|+.++
T Consensus 419 ~Pr~rLDaG---tfgTMGVG~Gfalaaa~~~P--------------~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~ 479 (571)
T KOG1185|consen 419 GPRRRLDAG---TFGTMGVGLGFALAAALAAP--------------DRKVVCVEGDSAFG--FSAMELETFVRYKLPVVI 479 (571)
T ss_pred CcccccCCc---cccccccchhHHHHHHhhCC--------------CCeEEEEecCcccC--cchhhHHHHHHhcCCeEE
Confidence 455544444 67889999988888888765 78999999999997 777779999999998888
Q ss_pred EEEECCCC-cccccc--cc--------------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004509 265 AFYDDNHI-SIDGDT--EI--------------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLI 327 (748)
Q Consensus 265 ~Ivd~N~~-~i~~~~--~~--------------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI 327 (748)
+|+|||++ +.+... ++ .......+..++||-+...| +.+++|..+++++.+.+++|++|
T Consensus 480 vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v----~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 480 VVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFV----STVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred EEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceee----CCHHHHHHHHHHHHhcCCCCeEE
Confidence 88888875 222111 11 12345678899999999988 48999999999998866799999
Q ss_pred EEEeee
Q 004509 328 RVTTTI 333 (748)
Q Consensus 328 ~~~T~k 333 (748)
.+...+
T Consensus 556 NVlI~p 561 (571)
T KOG1185|consen 556 NVLIGP 561 (571)
T ss_pred EEEecc
Confidence 887654
No 154
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.64 E-value=1.4e-06 Score=96.95 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=146.1
Q ss_pred cchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCC
Q 004509 493 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 572 (748)
Q Consensus 493 IaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPn 572 (748)
=.|...+++|.|.|..|. |.++.|=.+=+.+|.|++...++..+|++++.. .+.+.+ .++||..+.|+-+.|.- +
T Consensus 56 E~E~aA~~~aiGAs~aGa--Ra~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~-~R~~p~-~~~~~~~q~D~~~~~d~-g 130 (390)
T PRK08366 56 ESEHSAMAACIGASAAGA--RAFTATSAQGLALMHEMLHWAAGARLPIVMVDV-NRAMAP-PWSVWDDQTDSLAQRDT-G 130 (390)
T ss_pred CCHHHHHHHHHHHHhhCC--CeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe-ccCCCC-CCCCcchhhHHHHHhhc-C
Confidence 479999999999999995 999998888888999999999999999887763 454443 47888888887776654 8
Q ss_pred cEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC-------CCC--CC-------CC---C-----CCccccc-----
Q 004509 573 ILMLRPADGNETAGAYKVAVAN---RKRPSILALSR-------QKL--PH-------LA---G-----TSIDGVE----- 620 (748)
Q Consensus 573 l~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~r-------~~~--~~-------~~---~-----~~~~~~~----- 620 (748)
+.++.|+|..|+..+...|.+- ..-|+++++.. ..+ +. ++ . ....++.
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 8999999999999998887742 46799887621 110 00 00 0 0000000
Q ss_pred ---------------------------------cc-eeE-EecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEE
Q 004509 621 ---------------------------------KG-AYI-ISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 665 (748)
Q Consensus 621 ---------------------------------~G-~~~-v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~V 665 (748)
.| .|. ..+.-.....|+.||++|+....+.+|.+.|+++|+++.+
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 00 000 0010000136899999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHhhhhccCCCceEEEEccccccC
Q 004509 666 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 703 (748)
Q Consensus 666 Id~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G 703 (748)
+-++++.||+.+.+. .+++. ++.|+++|.....|
T Consensus 291 l~i~~~~PfP~~~i~---~~l~~-~k~ViVvE~n~~~G 324 (390)
T PRK08366 291 AKVRWFRPFPKEELY---EIAES-VKGIAVLDRNFSFG 324 (390)
T ss_pred EEEeeecCCCHHHHH---HHHhc-CCEEEEEeCCCCCC
Confidence 999999999987553 44544 34569999987644
No 155
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.61 E-value=1.4e-06 Score=101.80 Aligned_cols=206 Identities=19% Similarity=0.144 Sum_probs=146.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhH
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 565 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia 565 (748)
+-.+--.=.|...+++|.|.|..|. |.++.|=.+=+.+|.|.+...+...+|++++.. ++.+.+..-+|+..+.|+-
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~--Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~~-~R~gpstg~~t~~eq~D~~ 313 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGA--RAMTATSGPGFALMTEALGLAGMTETPLVIVDV-QRGGPSTGLPTKTEQSDLL 313 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCC--ceeecCCCCChhHhHHHHhHHHhccCCEEEEEc-ccCCCCCCCCCCccHHHHH
Confidence 3344455899999999999999995 999888777777899999777789999888864 5554444457888888887
Q ss_pred HHhcCC----CcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc------CCCC--CC---CC---------------
Q 004509 566 SFRAMP----NILMLRPADGNETAGAYKVAVAN---RKRPSILALS------RQKL--PH---LA--------------- 612 (748)
Q Consensus 566 ~lr~iP----nl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~------r~~~--~~---~~--------------- 612 (748)
+.+.-- ++.|++|+|..|+..+...|.+- ..-|++++.. ++.+ |. +.
T Consensus 314 ~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 393 (562)
T TIGR03710 314 FALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYK 393 (562)
T ss_pred HHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCC
Confidence 776432 38999999999999998887742 4679988752 1111 00 00
Q ss_pred ----CC-Ccccc-ccce---------------------------------------------eEEecCCCCCCCCEEEEE
Q 004509 613 ----GT-SIDGV-EKGA---------------------------------------------YIISDNSSGNKPDVILIG 641 (748)
Q Consensus 613 ----~~-~~~~~-~~G~---------------------------------------------~~v~~~~~~~g~dvtlva 641 (748)
++ ..... ..|. +.... ....|+.||+
T Consensus 394 ~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~---~~da~~~iv~ 470 (562)
T TIGR03710 394 RYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYG---DEDADVLVIG 470 (562)
T ss_pred CCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeec---CCCCCEEEEE
Confidence 00 00000 0110 00000 0135799999
Q ss_pred eChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccc
Q 004509 642 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 701 (748)
Q Consensus 642 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~ 701 (748)
+|++...+.+|.+.|+++|+++.++.++++.||+.+.+. ..++. ++.|+++|.+..
T Consensus 471 ~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~-~k~v~VvE~n~~ 526 (562)
T TIGR03710 471 WGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELA---ELLEG-AKKVIVVEQNAT 526 (562)
T ss_pred eCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHH---HHHhc-CCEEEEEccChh
Confidence 999999999999999999999999999999999987553 34443 344699999855
No 156
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.58 E-value=1.5e-06 Score=84.45 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCC-EEEEecCCCCCcccc--ccccc-----cccc--c---CCCCCccccccchHHHHHHHHHHHhc
Q 004509 442 NLSQTCLNALAKTLPG-LLGGSADLASSNMTL--LKMFG-----DFQK--D---TPEERNVRFGVREHGMGAICNGIALH 508 (748)
Q Consensus 442 ~a~~~~L~~l~~~~p~-vv~~saDl~~s~~~~--~k~~~-----~f~~--~---~~p~R~id~GIaE~~~vg~AaGlA~~ 508 (748)
.++++.|+++++.||. +.++++|...|+... ++.++ +... + .-+++-+..-++|+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 3577889999999874 999999998887642 21111 1100 0 11334444559999999999999999
Q ss_pred CCCCccEEEeehhHHH---HHHHH-H---HHhh---c-cCC-CeEEEEecCCCccCCCCCCCCChhhhH-HHhcCCC-cE
Q 004509 509 SPGLIPYCATFFVFTD---YMRAA-I---RISA---L-CEA-GVIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPN-IL 574 (748)
Q Consensus 509 G~~~~Piv~~f~~F~~---r~~dq-I---r~~a---~-~~~-pVi~v~t~~g~~~g~dG~THq~~edia-~lr~iPn-l~ 574 (748)
|. .-++.+|..|+. -|+.| + +... . ... .+.++.|....--+.+|.|||...-+. ++.-.|+ ++
T Consensus 82 Gr--hglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~R 159 (179)
T PF03894_consen 82 GR--HGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVR 159 (179)
T ss_dssp T---EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EE
T ss_pred CC--cccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccce
Confidence 97 899999999985 56776 2 2221 1 122 255555555565689999999654333 3444444 69
Q ss_pred EEeeCCHHHHHHHHHHHHH
Q 004509 575 MLRPADGNETAGAYKVAVA 593 (748)
Q Consensus 575 V~~Psd~~e~~~~l~~a~~ 593 (748)
||.|.|++.+-.++..|++
T Consensus 160 vylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 160 VYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEE-SSHHHHHHHHHHHHH
T ss_pred eecCCcHhHHHHHHHHHhc
Confidence 9999999999999999985
No 157
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.56 E-value=2e-06 Score=95.91 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCC
Q 004509 493 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 572 (748)
Q Consensus 493 IaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPn 572 (748)
=+|...+++|.|-|..|. |.+..|=++=+.+|.|.+...+...+|++++.. .+ +.+.-.++|....|....|.. +
T Consensus 57 EsE~aA~~~~~GAs~aGa--Ra~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv~-~R-~~~~p~~i~~d~~D~~~~rd~-g 131 (394)
T PRK08367 57 ESEHSAISACVGASAAGV--RTFTATASQGLALMHEVLFIAAGMRLPIVMAIG-NR-ALSAPINIWNDWQDTISQRDT-G 131 (394)
T ss_pred CCHHHHHHHHHHHHhhCC--CeEeeeccchHHHHhhHHHHHHHccCCEEEEEC-CC-CCCCCCCcCcchHHHHhcccc-C
Confidence 579999999999999994 999988888888999999999999999999873 22 233333677777786666654 4
Q ss_pred cEEEeeCCHHHHHHHHHHHHHcCC-----CcEEEEEcCC-------CC--CC-------CCC--------CCccccc---
Q 004509 573 ILMLRPADGNETAGAYKVAVANRK-----RPSILALSRQ-------KL--PH-------LAG--------TSIDGVE--- 620 (748)
Q Consensus 573 l~V~~Psd~~e~~~~l~~a~~~~~-----~P~~irl~r~-------~~--~~-------~~~--------~~~~~~~--- 620 (748)
+.++.|+|..|+..+...|.+-.. -|+++++..- ++ |. ++. ++..+..
T Consensus 132 ~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~ 211 (394)
T PRK08367 132 WMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGA 211 (394)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCC
Confidence 778899999999999888775322 4999875321 10 00 000 0000000
Q ss_pred -----------------------------------cc-eeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEE
Q 004509 621 -----------------------------------KG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVR 664 (748)
Q Consensus 621 -----------------------------------~G-~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~ 664 (748)
.| +|...+.-.....|+.||++|+....+.+|.+.|+++|+++.
T Consensus 212 ~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVG 291 (394)
T PRK08367 212 LAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVG 291 (394)
T ss_pred CCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcce
Confidence 11 121111000014689999999999999999999999999999
Q ss_pred EEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCc
Q 004509 665 VVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 704 (748)
Q Consensus 665 VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~ 704 (748)
++-++.+.||+.+.+ ..+++. ++.|+|+|-+...|.
T Consensus 292 llri~~~rPFP~~~i---~~~l~~-~k~ViVvE~n~s~g~ 327 (394)
T PRK08367 292 AAKLTVYRPFPVEEI---RALAKK-AKVLAFLEKNISFGL 327 (394)
T ss_pred eEEEeEecCCCHHHH---HHHHcc-CCEEEEEeCCCCCCC
Confidence 999999999998765 345544 345699999876654
No 158
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.55 E-value=9.8e-07 Score=94.26 Aligned_cols=123 Identities=21% Similarity=0.163 Sum_probs=92.4
Q ss_pred cccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECC-CCcc
Q 004509 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN-HISI 274 (748)
Q Consensus 196 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N-~~~i 274 (748)
...+.+|.+.+.|.|++.|.+.++ .+..|||+.|||.+-. .-.++|..|...+.+ +++||-|| -|+.
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~----------~~~~Vv~~~GDG~~~d-IG~~~L~~a~~r~~n-i~~ivlDNe~Y~n 133 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALG----------KKVNVVAIGGDGGTAD-IGFQSLSGAMERGHN-ILYLMYDNEAYMN 133 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhc----------CCCeEEEEeCCchHhh-ccHHHHHHHHHcCCC-eEEEEECCccccC
Confidence 456778889999999999987543 2568999999998743 234899999999974 55555555 4443
Q ss_pred cccc-----cc-----------------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 275 DGDT-----EI-----------------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 275 ~~~~-----~~-----------------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
.|.. .. ....|+.+++.++|..++...+-. |+.++.+++++|.+ .++|.+|++.+.
T Consensus 134 TGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~-~~~~l~~~i~~A~~-~~Gps~I~v~sP 211 (299)
T PRK11865 134 TGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIG-YPEDFMEKVKKAKE-VEGPAYIQVLQP 211 (299)
T ss_pred CCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEEEECC
Confidence 3221 10 113578899999999988655766 99999999999998 789999999864
No 159
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.35 E-value=0.00042 Score=79.06 Aligned_cols=465 Identities=15% Similarity=0.159 Sum_probs=255.0
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcc-hhhHHHHHHHHHH--cCCCcEEEEEECCCCcccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGH--LGLGKLIAFYDDNHISIDGDTEI 280 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~-eG~~~Eal~~A~~--~~L~~li~Ivd~N~~~i~~~~~~ 280 (748)
.=|..+|---|..+.. .|.+.....-+.+-||++|. +|++||.+.+-.. +--.-.|-|+-||+++-.+....
T Consensus 379 ~DPVV~GKtrA~q~y~-----~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~ 453 (1017)
T KOG0450|consen 379 VDPVVMGKTRAEQFYT-----GDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRF 453 (1017)
T ss_pred cCceeechHHHHHHhc-----cccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCccc
Confidence 3355666666655432 12222345568889999996 4999998876542 22223567777888776554432
Q ss_pred c-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCCCCCCCCccccCCcCchhhH
Q 004509 281 A-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEV 356 (748)
Q Consensus 281 ~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~ 356 (748)
. ..+--.+.+++.+...+.| ++. |++++.-+.+-|.+ .-.+-+||.+.++|.+||-.++.+. +- .+.-+
T Consensus 454 aRSspYcTDvar~v~aPIFHV-NaD-D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FT----QPlMY 526 (1017)
T KOG0450|consen 454 ARSSPYCTDVARVVNAPIFHV-NAD-DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FT----QPLMY 526 (1017)
T ss_pred ccCCCCchhHHHHhCCCeEee-cCC-ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-cc----chHHH
Confidence 1 1111234566777888888 999 99999888876654 2367899999999999998764322 11 11222
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHH-HHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHH-----------HhcCCCCCcc
Q 004509 357 DATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKS-----------ISSGQLPAGW 424 (748)
Q Consensus 357 ~~~~~~~~~~~~~~~v~~e~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~-----------~l~~~~p~~~ 424 (748)
++.++. +.+++.|.+ ++.+|.-..++..+...+|... +.+.|++ .++. .|
T Consensus 527 k~I~k~-----------~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I---~eeafe~sKd~~~~~~rdWL~s----pW 588 (1017)
T KOG0450|consen 527 KQIRKH-----------KPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNI---LEEAFERSKDYKPLHIRDWLDS----PW 588 (1017)
T ss_pred HHHHcC-----------CcHHHHHHHHHHhcCcccHHHHHHHHHHHHHH---HHHHHHhhccccchhhhhhhcC----CC
Confidence 332221 124566665 5566655555544444433321 1112211 1111 11
Q ss_pred cc---------cCC-------------------CCCCCCc-------chhHH----------HHHHHHHH--HHHHhCCC
Q 004509 425 EK---------ALP-------------------TYTPESP-------AEATR----------NLSQTCLN--ALAKTLPG 457 (748)
Q Consensus 425 ~~---------~~p-------------------~~~~~~~-------~~~~r----------~a~~~~L~--~l~~~~p~ 457 (748)
.. .+| .++.+-+ -...| -+.+++|. .|.++--.
T Consensus 589 ~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~~~iDwal~EalAFgsLl~EG~h 668 (1017)
T KOG0450|consen 589 PGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKSEGVDWALAEALAFGSLLKEGIH 668 (1017)
T ss_pred ccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhcCce
Confidence 10 000 0000000 00011 12233322 44555556
Q ss_pred EEEEecCCCCCcccc----cc----------ccccccccCCCCCccccccchHHHHHHHHHHHhcCCCCccEEE-eehhH
Q 004509 458 LLGGSADLASSNMTL----LK----------MFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVF 522 (748)
Q Consensus 458 vv~~saDl~~s~~~~----~k----------~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~-~f~~F 522 (748)
|.+-+.|+...+..- +- .+..+..++-|=-+-|.-++|-+.+|+--|+++.......+.+ .|.+|
T Consensus 669 VRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDF 748 (1017)
T KOG0450|consen 669 VRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDF 748 (1017)
T ss_pred EEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccc
Confidence 778888886443210 00 0111111111223458899999999999999998854455554 58888
Q ss_pred H---HHHHHHHHHhh----ccCCCeEEEEecCCCccCCCCCCCCChhhhHHHh-------cCC-------------CcEE
Q 004509 523 T---DYMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR-------AMP-------------NILM 575 (748)
Q Consensus 523 ~---~r~~dqIr~~a----~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr-------~iP-------------nl~V 575 (748)
. |.++||.--.+ +....+++...| |+ -..||-|.+---+-+|. .+| |+.|
T Consensus 749 aNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-Gy--eG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~v 825 (1017)
T KOG0450|consen 749 ANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-GY--EGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQV 825 (1017)
T ss_pred cccchhhHHhHhccchhhhhhhcCeEEEccC-Cc--CCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEE
Confidence 6 46788854332 356777777754 44 33589997543333321 122 6789
Q ss_pred EeeCCHHHHHHHHHHHHHc-CCCcEEEEEcCCCCCCCCC-CCccccc-----------cceeEEecCCCCCCCCEEEEEe
Q 004509 576 LRPADGNETAGAYKVAVAN-RKRPSILALSRQKLPHLAG-TSIDGVE-----------KGAYIISDNSSGNKPDVILIGT 642 (748)
Q Consensus 576 ~~Psd~~e~~~~l~~a~~~-~~~P~~irl~r~~~~~~~~-~~~~~~~-----------~G~~~v~~~~~~~g~dvtlva~ 642 (748)
+.++++.....+|+.-+.. -..|.+|..||.-+..... .+...+. -|+.....+ +-+=.|+.+
T Consensus 826 vn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe----~vkrlv~cs 901 (1017)
T KOG0450|consen 826 VNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPE----NVKRLVFCS 901 (1017)
T ss_pred EecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChh----hceEEEEec
Confidence 9999999999999976642 3579999988765421100 0111111 122222222 234556777
Q ss_pred ChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhcc-CCCceEEEEccccccCcchhh
Q 004509 643 GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGSTFGWEKIV 708 (748)
Q Consensus 643 G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~-~~~~~vv~vE~~~~~G~~~~v 708 (748)
|-....--++.+.... --++.+.-+-.+.||..+.+. .++.+ .+.-++..-||+...|.-.|+
T Consensus 902 GkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~--~e~~~YpnaEivWcQEE~~NmG~w~Yv 965 (1017)
T KOG0450|consen 902 GKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQ--QELNKYPNAEIVWCQEEHKNMGAWDYV 965 (1017)
T ss_pred ceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHH--HHHHhCCCceeeehhhhhcccCchhhc
Confidence 8766554444443321 125666666677776665543 23222 133455677999887754554
No 160
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.35 E-value=9.5e-05 Score=87.70 Aligned_cols=543 Identities=16% Similarity=0.171 Sum_probs=270.9
Q ss_pred CCCCHHHHHHHHHhhchhcCCCCCCCCCCCeEEEeCCCccHHHHHHHHHcCCCCCCHHHH-hhhhhcCC--CCCC----C
Q 004509 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KNFRQWGS--KTPG----H 185 (748)
Q Consensus 113 ~~ls~~~i~~~L~~~~l~~~~~~p~~~~rDr~I~s~GH~~~~~Ya~~~l~G~~~~~~~~l-~~~r~~~s--~~~G----h 185 (748)
++=|.++++-.|.....+. +-+.+|+.-.|..-+---+.. .|. +.+++ ..|..... ...| |
T Consensus 208 G~eslip~l~~~i~~~~~~--------G~~~vviGMaHRGRLNvL~nv-lgK---p~~~if~eF~g~~~~~~~sGDVKYH 275 (906)
T COG0567 208 GGESLIPMLDELIDRAGKQ--------GVKEVVIGMAHRGRLNVLVNV-LGK---PYRDIFDEFEGKSAEPDLSGDVKYH 275 (906)
T ss_pred chhhHHHHHHHHHHHHHhc--------CcceEEecccccchHHHHHHH-hCC---CHHHHHHHhCCCCCCCCcccccccc
Confidence 4455677776666553332 346689999998744333333 442 45554 33432110 0012 1
Q ss_pred C---CCCCCCccc------cccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE--EEEEcchhcc-hhhHHHHHH
Q 004509 186 P---ENFETPGIE------VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT--YVILGDGCQM-EGIANEASS 253 (748)
Q Consensus 186 p---~~~~~pgi~------~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v--~~iiGDG~~~-eG~~~Eal~ 253 (748)
- ....+++-. +.-.||=.--|+..|.+-|..-.. +.. ...++ +.+.||.+++ +|.+.|.++
T Consensus 276 ~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~---~d~----~~~k~lpiliHGDAAfaGQGVV~Etln 348 (906)
T COG0567 276 LGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRL---GDT----ERDKVLPILIHGDAAFAGQGVVAETLN 348 (906)
T ss_pred cccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhh---ccC----ccceeEEEEEecChhcCCccHHHHHHH
Confidence 1 111122211 122445445588888888765332 111 12234 5899999987 499999999
Q ss_pred HHHHcC--CCcEEEEEECCCCcccccccc----cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCC
Q 004509 254 LAGHLG--LGKLIAFYDDNHISIDGDTEI----AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKP 324 (748)
Q Consensus 254 ~A~~~~--L~~li~Ivd~N~~~i~~~~~~----~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P 324 (748)
+....+ .+..+-|+-||+++-.+.... ....| .++.++.+++.| +|. |++++..+.+.|.+ .-.++
T Consensus 349 ls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TD---vAKm~~aPifHV-N~D-DPEAv~~a~~~A~e~R~~F~kD 423 (906)
T COG0567 349 LSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTD---VAKMIEAPIFHV-NAD-DPEAVLFAPALALEYRNGFKKD 423 (906)
T ss_pred hhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCC---hhhccCCceeec-ccC-CchhhhhhHHHHHHHHhhcCCC
Confidence 987544 556777777887766554321 12345 455567799998 999 99999888887755 34799
Q ss_pred EEEEEEeeeccCCCCCCCCccccCCcCchhhHHHHHHhcCCCCCCCCCchhHHHHHHH-HHhhhhhhHHHHHHHHHHHHh
Q 004509 325 TLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEK 403 (748)
Q Consensus 325 ~vI~~~T~kg~G~~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~~~v~~e~~~~~~~-~~~~g~~~~~~~~~~~~~~~~ 403 (748)
++|.+.+++-+||-..+.+... .+.=++..++. +.+.+.|.+ ++++|.....+......++..
T Consensus 424 vvIDlvcYRr~GHNE~DePs~T-----qP~mY~~I~~h-----------~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~ 487 (906)
T COG0567 424 VVIDLVCYRRHGHNEGDEPSVT-----QPLMYQKIKKH-----------PTVRKLYADKLIAEGVISEEEADELVNDYRD 487 (906)
T ss_pred eeeecccCCCCCCCcccccccc-----CHHHHHHHhcC-----------CChhhhHHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999999876533211 11111111111 011233333 233332222221111111111
Q ss_pred hC---HHHHHHHH--HHhcCCC-------CCcccccCC------------CCCCCCc-chhHHHHH--------------
Q 004509 404 KY---PEEAAEFK--SISSGQL-------PAGWEKALP------------TYTPESP-AEATRNLS-------------- 444 (748)
Q Consensus 404 ~~---p~~~~~~~--~~l~~~~-------p~~~~~~~p------------~~~~~~~-~~~~r~a~-------------- 444 (748)
.. -+...... ..+...- +......++ .++.+-. -...+..+
T Consensus 488 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iD 567 (906)
T COG0567 488 ALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGID 567 (906)
T ss_pred HhhhhhhHHhHHHhhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccccccc
Confidence 00 00001111 0000000 000000000 0000000 00000000
Q ss_pred ---HH--HHHHHHHhCCCEEEEecCCCCCcccc----cc---------ccccccccCCCCCccccccchHHHHHHHHHHH
Q 004509 445 ---QT--CLNALAKTLPGLLGGSADLASSNMTL----LK---------MFGDFQKDTPEERNVRFGVREHGMGAICNGIA 506 (748)
Q Consensus 445 ---~~--~L~~l~~~~p~vv~~saDl~~s~~~~----~k---------~~~~f~~~~~p~R~id~GIaE~~~vg~AaGlA 506 (748)
.+ +...+......+.+-+.|.+..+..- +- .+..+....-.=.++|.+++|.+++|+=-|.+
T Consensus 568 W~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs 647 (906)
T COG0567 568 WGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYS 647 (906)
T ss_pred hhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhh
Confidence 01 11122223344555556654332210 00 00111110111245689999999999999999
Q ss_pred hcCCCCccEE-EeehhHHH---HHHHHHHHhh----ccCCCeEEEEecCCCccCCCCCCCCChhhhHHHh--cCCCcEEE
Q 004509 507 LHSPGLIPYC-ATFFVFTD---YMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR--AMPNILML 576 (748)
Q Consensus 507 ~~G~~~~Piv-~~f~~F~~---r~~dqIr~~a----~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr--~iPnl~V~ 576 (748)
..-.....+. ..|.+|+. ..+||.-.+. ...+.+++...| |+ -..||.|.+--...+|. +=-||+|.
T Consensus 648 ~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPH-gy--EGQGPEHSSaRlER~LQLcaE~NmqV~ 724 (906)
T COG0567 648 LANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPH-GY--EGQGPEHSSARLERFLQLCAENNMQVV 724 (906)
T ss_pred hcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccC-CC--CCCCCcCccchhHHHHHhhHHhCCEEE
Confidence 8774222222 35777763 4567643332 245677777655 33 33599998755445544 44499999
Q ss_pred eeCCHHHHHHHHHH-HHHcCCCcEEEEEcCCCCCCCC-CCCccccccceeE-EecCCCCCCCCEE-EEEeChhHHHHHHH
Q 004509 577 RPADGNETAGAYKV-AVANRKRPSILALSRQKLPHLA-GTSIDGVEKGAYI-ISDNSSGNKPDVI-LIGTGSELEIAAKA 652 (748)
Q Consensus 577 ~Psd~~e~~~~l~~-a~~~~~~P~~irl~r~~~~~~~-~~~~~~~~~G~~~-v~~~~~~~g~dvt-lva~G~~v~~al~A 652 (748)
.|+++.....+++. ++.....|.+|.-||..+-.-. ..+...+..|... ++.+...-.+++. ||-|-..+...+.+
T Consensus 725 ~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvyydl~~ 804 (906)
T COG0567 725 VPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVYYDLLE 804 (906)
T ss_pred ecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEeeccchHHHHHH
Confidence 99999999999984 4444567888877765442100 0111222223222 2221000022233 33344444444433
Q ss_pred HHHHHhCC-CcEEEEecCChhhHHHHHHHHhhhhccC---CCceEEEEccccccC
Q 004509 653 AEELRKGG-KAVRVVSFVSWELFDEQSDAYKESVLPA---AVSARVSIEAGSTFG 703 (748)
Q Consensus 653 a~~L~~~G-i~v~VId~~~l~pld~~~~~~~~~v~~~---~~~~vv~vE~~~~~G 703 (748)
.. ++.| .++.+|=+..+-||..+.+. +.+.. ..-++..-|+....|
T Consensus 805 ~r--~~~g~~dvaiiRiEqLyPfP~~~l~---~~l~~y~~~~e~vW~QEEp~N~G 854 (906)
T COG0567 805 QR--EKDGRDDVAIVRIEQLYPFPAKALA---ALLAKYPNVKEFVWCQEEPKNQG 854 (906)
T ss_pred HH--hhcCCcceeEEeeecccCchHHHHH---HHHHhccccccccccccCCCccc
Confidence 33 4445 36788888899999987652 33332 122345556655544
No 161
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.14 E-value=1.3e-06 Score=91.56 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=90.3
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 197 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
..|+||+-+|.|+|+-.|.+ ++.|+++.||-.|| ...|+|...++++|+-+-+++||..+++..
T Consensus 417 qagplgwtipaalgv~~adp--------------~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylglir 480 (592)
T COG3960 417 QAGPLGWTIPAALGVCAADP--------------KRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLGLIR 480 (592)
T ss_pred ccCCcccccchhhceeecCC--------------CCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHHHHH
Confidence 57999999999999988765 67899999999999 999999999999995444555444333322
Q ss_pred ccc----------cc-----------ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEee
Q 004509 277 DTE----------IA-----------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTT 332 (748)
Q Consensus 277 ~~~----------~~-----------~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~ 332 (748)
..+ .. ..-|-.+..+++|++.++| .+++++..||++|+. ...-|+++++.-.
T Consensus 481 qaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv----~~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 481 QAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV----FKPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEe----cChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 211 10 1223456789999999999 489999999999865 4678999998866
Q ss_pred ec
Q 004509 333 IG 334 (748)
Q Consensus 333 kg 334 (748)
|-
T Consensus 557 rv 558 (592)
T COG3960 557 RV 558 (592)
T ss_pred Hh
Confidence 63
No 162
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.00 E-value=0.00019 Score=90.20 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=134.9
Q ss_pred cchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCC
Q 004509 493 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 572 (748)
Q Consensus 493 IaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPn 572 (748)
=.|.+.++++.|-+..|. +.+..|=++=+.+|.+.+...+-+.+|+++... .+.+.+..+..|....|+...|. -|
T Consensus 58 EsE~~A~~av~GA~~aGa--ra~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~va-~R~~~~~~~~i~~dh~Dv~~~R~-~G 133 (1165)
T TIGR02176 58 QSEAGAAGAVHGALQTGA--LTTTFTASQGLLLMIPNMYKIAGELLPCVFHVS-ARAIAAHALSIFGDHQDVMAARQ-TG 133 (1165)
T ss_pred cchHHHHHHHHhHhhcCC--CEEEecChhHHHHHHHHHHHHHhccCCEEEEEe-cCCCCCCCCccCCCchHHHHhhc-CC
Confidence 479999999999999994 777776666667888888655556899888873 33322222345655667655554 46
Q ss_pred cEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC-----C--CCCCC---------CCCCc-----------cccc--
Q 004509 573 ILMLRPADGNETAGAYKVAVA---NRKRPSILALSR-----Q--KLPHL---------AGTSI-----------DGVE-- 620 (748)
Q Consensus 573 l~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r-----~--~~~~~---------~~~~~-----------~~~~-- 620 (748)
+.|++|++..|+..+...|.+ +...|+++.+.- . .+... +.... ....
T Consensus 134 ~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G 213 (1165)
T TIGR02176 134 FAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRG 213 (1165)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeC
Confidence 799999999999887766653 246688876531 0 11000 00000 0000
Q ss_pred ------------------------------------cc-eeEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcE
Q 004509 621 ------------------------------------KG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAV 663 (748)
Q Consensus 621 ------------------------------------~G-~~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v 663 (748)
.| .|...+.-+....+.+||++|+....+.+|.+.|+++|+++
T Consensus 214 ~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kV 293 (1165)
T TIGR02176 214 TAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKV 293 (1165)
T ss_pred CCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCce
Confidence 11 11111110001468999999999999999999999999999
Q ss_pred EEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccC
Q 004509 664 RVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 703 (748)
Q Consensus 664 ~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G 703 (748)
.+|.++.+.||+.+.+. .+++.+++.|+|+|.....|
T Consensus 294 Gli~vr~~rPFp~e~l~---~aLp~svK~I~Vler~~~~g 330 (1165)
T TIGR02176 294 GLLKVRLYRPFSAETFF---AALPKSVKRIAVLDRTKEPG 330 (1165)
T ss_pred eEEEEeEeCCCCHHHHH---HHHHhcCCEEEEEECCCCCC
Confidence 99999999999987552 44544445578999885544
No 163
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.59 E-value=0.0015 Score=74.97 Aligned_cols=202 Identities=16% Similarity=0.173 Sum_probs=133.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccC--CCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCE--AGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~--~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
+-||+.+..|--+..+|.|-+..| .+.+++.=-.=+.++-|.+...+|.. -.++++...| - |. . +-|..+|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G--~ral~~mKhVGlNvAsDpl~s~ay~Gv~GGlviv~aDD-p--g~-~-SSqneqd 130 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAG--VRALVTMKHVGLNVASDPLMSLAYAGVTGGLVIVVADD-P--GM-H-SSQNEQD 130 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcC--ceeeEEecccccccchhhhhhhhhcCccccEEEEEccC-C--Cc-c-cccchhH
Confidence 567889999999999999999999 48887665555668889888777654 3455554222 1 11 1 1133456
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCC-------CCCCCCC-ccccccceeEE
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKL-------PHLAGTS-IDGVEKGAYII 626 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~r------~~~-------~~~~~~~-~~~~~~G~~~v 626 (748)
--++...-.+-|+.|+|+.|+..+++.+++- ..-|++||... +.+ +...... ...-..|.|+.
T Consensus 131 sr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~ 210 (640)
T COG4231 131 SRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVR 210 (640)
T ss_pred hHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceee
Confidence 5677777788899999999999999998852 46799998631 111 1000000 00011223322
Q ss_pred e-----------------------------cCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHH
Q 004509 627 S-----------------------------DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQ 677 (748)
Q Consensus 627 ~-----------------------------~~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~ 677 (748)
. +-.+....++-||+.|-...-+.+| |++.|++..++-+-+..||+.+
T Consensus 211 ~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeA---l~~lgl~~~~lklg~~~Plp~~ 287 (640)
T COG4231 211 VPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEA---LEDLGLDDELLKLGTPYPLPEQ 287 (640)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHH---HHHcCCCceeEEecCCcCCCHH
Confidence 1 0000012689999999999888877 5556899999999999999988
Q ss_pred HHHHhhhhccCCCceEEEEccccc
Q 004509 678 SDAYKESVLPAAVSARVSIEAGST 701 (748)
Q Consensus 678 ~~~~~~~v~~~~~~~vv~vE~~~~ 701 (748)
.++ +.++ +...|+++||...
T Consensus 288 ~i~---~F~~-g~~~vlVVEE~~P 307 (640)
T COG4231 288 LIE---NFLK-GLERVLVVEEGEP 307 (640)
T ss_pred HHH---HHHh-cCcEEEEEecCCc
Confidence 764 3333 3344799999865
No 164
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.52 E-value=0.0008 Score=72.22 Aligned_cols=115 Identities=20% Similarity=0.146 Sum_probs=82.1
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcch-hcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccc
Q 004509 200 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (748)
Q Consensus 200 ~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG-~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~ 278 (748)
.-|-.++.|.|+.+|.+ +..||++.||| ++..| ...+..+.+.+.+..++++||--|+..+-.
T Consensus 71 ~~gra~a~atGik~A~~--------------~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTggQ 134 (294)
T COG1013 71 LHGRAAAVATGIKLANP--------------ALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGGQ 134 (294)
T ss_pred ccCcchhhHHHHHHhcc--------------CCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCCCc
Confidence 34567889999999987 56799999999 56644 557889999998555555555445443321
Q ss_pred c-------c----------c-ccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 279 E-------I----------A-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 279 ~-------~----------~-~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
. . . ..-|+..++-++|..++--.-=- ++..+.+.+++|.+ .+||.+|++.+.
T Consensus 135 ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~-~~~~l~~~i~kA~~-~~Gps~I~v~sP 204 (294)
T COG1013 135 ASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVG-DPKDLTEKIKKAAE-HKGPSFIDVLSP 204 (294)
T ss_pred cCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEeccc-CHHHHHHHHHHHHh-ccCCeEEEEecC
Confidence 1 0 0 22377888999998876321222 68999999999998 789999999864
No 165
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.47 E-value=0.0003 Score=80.55 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=85.9
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccc
Q 004509 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (748)
Q Consensus 199 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~ 278 (748)
-.+|.++++|-|++++. ++++++++|||.|..- -..++..|...+.+.+++|+||.--++.|..
T Consensus 428 ~~mGssig~a~g~~~~~---------------~k~~va~iGDsTF~Hs-Gi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQ 491 (640)
T COG4231 428 TMMGSSIGIAGGLSFAS---------------TKKIVAVIGDSTFFHS-GILALINAVYNKANILVVVLDNRTTAMTGGQ 491 (640)
T ss_pred hhccchhhhcccccccc---------------CCceEEEecccccccc-CcHHHHHHHhcCCCeEEEEEeccchhccCCC
Confidence 34566677777776643 4789999999999752 2346999999998666666666554555433
Q ss_pred cc-----------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q 004509 279 EI-----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 279 ~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T 331 (748)
.. ....++.+..+++|...+.++|=+ |++++.+++++|++ ..+|.||+++.
T Consensus 492 p~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~-~~~~~~~~~keale-~~gpsViiak~ 553 (640)
T COG4231 492 PHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPY-DVKELSEAIKEALE-VPGPSVIIAKR 553 (640)
T ss_pred CCCCcccccCCCccceeEhhHhhhhcCceeeeccCCc-chHHHHHHHHHHhc-CCCceEEEEcC
Confidence 21 123467899999999999987866 99999999999998 78899998774
No 166
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.44 E-value=0.0062 Score=67.59 Aligned_cols=180 Identities=19% Similarity=0.179 Sum_probs=124.1
Q ss_pred cchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCCC
Q 004509 493 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 572 (748)
Q Consensus 493 IaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iPn 572 (748)
=+|.+.++++.|.+..|. +.+..|-.+=+.+|.+.|-..+.+.+|++++.. .+.+....=||+....|+...|.. +
T Consensus 54 EsE~~a~s~v~GA~~aGa--r~~TaTSg~Gl~Lm~E~l~~a~~~~~P~Vi~~~-~R~~ps~g~p~~~dq~D~~~~r~~-g 129 (365)
T COG0674 54 ESEIGAISAVIGASYAGA--RAFTATSGQGLLLMAEALGLAAGTETPLVIVVA-QRPLPSTGLPIKGDQSDLMAARDT-G 129 (365)
T ss_pred ccHHHHHHHHHHHHhhCc--ceEeecCCccHHHHHHHHHHHHhccCCeEEEEe-ccCcCCCcccccccHHHHHHHHcc-C
Confidence 468999999999999994 888888888888899999999999999888874 344344433499999999999877 8
Q ss_pred cEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc--------------CCCCC--CC-----C--CCCccccccc----
Q 004509 573 ILMLRPADGNETAGAYKVAVAN---RKRPSILALS--------------RQKLP--HL-----A--GTSIDGVEKG---- 622 (748)
Q Consensus 573 l~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~--------------r~~~~--~~-----~--~~~~~~~~~G---- 622 (748)
+.+++=+|..|+..+...|.+- .--|+++.+. +++.+ .+ + .........|
T Consensus 130 ~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (365)
T COG0674 130 FPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAV 209 (365)
T ss_pred ceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCC
Confidence 8888888888877666555532 3457766531 11100 00 0 0000000011
Q ss_pred -----------------------------------e---eEEecCCCCCCCCEEEEEeChhHHHHHHHHHHH-HhCCCcE
Q 004509 623 -----------------------------------A---YIISDNSSGNKPDVILIGTGSELEIAAKAAEEL-RKGGKAV 663 (748)
Q Consensus 623 -----------------------------------~---~~v~~~~~~~g~dvtlva~G~~v~~al~Aa~~L-~~~Gi~v 663 (748)
. +.+... ...+++||++|+....+.+++..+ +++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~---~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kv 286 (365)
T COG0674 210 PDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGY---EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKV 286 (365)
T ss_pred CceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecC---CCcCEEEEEeccchHhHHHHHHHHHHhcCceE
Confidence 0 011110 145789999998887777776665 5889999
Q ss_pred EEEecCChhhHHHHHH
Q 004509 664 RVVSFVSWELFDEQSD 679 (748)
Q Consensus 664 ~VId~~~l~pld~~~~ 679 (748)
.++-++.+.||+.+.+
T Consensus 287 g~l~vr~~rPFp~~~i 302 (365)
T COG0674 287 GLLKVRTLRPFPAEEI 302 (365)
T ss_pred EEEEEEEeCCCCHHHH
Confidence 9999999999998755
No 167
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.17 E-value=0.001 Score=75.33 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc----
Q 004509 205 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI---- 280 (748)
Q Consensus 205 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~---- 280 (748)
++.|+|++.+. .+.++.++||=++-- -.-+|........+-.|||+|||+-+|-.....
T Consensus 428 vSTA~Gi~~a~---------------~~ptv~liGDLS~lh--D~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~ 490 (566)
T COG1165 428 VSTALGIARAT---------------QKPTVALIGDLSFLH--DLNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSE 490 (566)
T ss_pred HHHHhhhhhhc---------------CCceEEEEechhhhh--ccchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCc
Confidence 57788999875 345999999999984 344666777777777888899998887543211
Q ss_pred ---------cccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Q 004509 281 ---------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 333 (748)
Q Consensus 281 ---------~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~k 333 (748)
-..-|++..++.||.++..+ .+++++.++++.+-. ..+-++||++|.+
T Consensus 491 ~~fe~~F~tPh~ldF~~la~~y~l~y~~~----~s~~~l~~~~~~~~~-~~g~~viEvkt~r 547 (566)
T COG1165 491 PVFERLFGTPHGLDFAHLAATYGLEYHRP----QSWDELGEALDQAWR-RSGTTVIEVKTDR 547 (566)
T ss_pred chHHHhcCCCCCCCHHHHHHHhCcccccc----CcHHHHHHHHhhhcc-CCCcEEEEEecCh
Confidence 12357889999999999998 389999999998875 5678999999976
No 168
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.08 E-value=0.22 Score=55.31 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=63.8
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhccC-CCeEEEEecCCCccCCCC--CCCC
Q 004509 485 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALCE-AGVIYVMTHDSIGLGEDG--PTHQ 559 (748)
Q Consensus 485 p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~~-~pVi~v~t~~g~~~g~dG--~THq 559 (748)
|.+|+.+|-- .+..++|.|+|+.-. =+++++... .|+..+ .-+-..+..+ .|+++++-..+. ++..| +++.
T Consensus 214 ~~~f~~~GsM-G~a~p~AlG~ala~p-~r~Vv~i~GDGsflm~~-~eL~t~~~~~~~nli~VVlNNg~-~~~~g~q~~~~ 289 (361)
T TIGR03297 214 ARDFLTVGSM-GHASQIALGLALARP-DQRVVCLDGDGAALMHM-GGLATIGTQGPANLIHVLFNNGA-HDSVGGQPTVS 289 (361)
T ss_pred CCceEeechh-hhHHHHHHHHHHHCC-CCCEEEEEChHHHHHHH-HHHHHHHHhCCCCeEEEEEcCcc-ccccCCcCCCC
Confidence 6777764221 122356777776543 266776644 454332 1233333344 477766655544 22222 2332
Q ss_pred ChhhhH-HHhcCCCc-EEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 560 PIEHLA-SFRAMPNI-LMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 560 ~~edia-~lr~iPnl-~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
...|.. +.++. |. ..+...+..|+..+++.+.+ .++|++|.+
T Consensus 290 ~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~-~~gp~lIeV 333 (361)
T TIGR03297 290 QHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASS-ANGPRLIEV 333 (361)
T ss_pred CCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCcEEEEE
Confidence 223333 33443 53 56788999999999999986 589999865
No 169
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=96.76 E-value=0.0054 Score=63.71 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=79.7
Q ss_pred ccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhc
Q 004509 490 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 569 (748)
Q Consensus 490 d~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~ 569 (748)
--.-.|...++++.|.|+.|. |.++.|=..=+..|.|.|...+..++|++++.. .+.+.+..+++|+...|+-+.|
T Consensus 40 ~~~E~E~~A~~~~~GAs~aG~--ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~-~R~g~~~g~~~~~~q~D~~~~~- 115 (230)
T PF01855_consen 40 VQAESEHAAMEAAIGASAAGA--RAMTATSGPGLNLMAEPLYWAAGTELPIVIVVV-QRAGPSPGLSTQPEQDDLMAAR- 115 (230)
T ss_dssp EE-SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHHHHHHTT--EEEEEE-EB---SSSB--SB-SHHHHHTT-
T ss_pred EEecchHHHHHHHHHHHhcCC--ceEEeecCCcccccHhHHHHHHHcCCCEEEEEE-ECCCCCCCCcCcCChhHHHHHH-
Confidence 345789999999999999995 999988778788899999888999999888874 3444444478999899987777
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 004509 570 MPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS 604 (748)
Q Consensus 570 iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~ 604 (748)
--++.|+.|+|..|+..+...|.+ +..-|++++..
T Consensus 116 d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~D 153 (230)
T PF01855_consen 116 DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFD 153 (230)
T ss_dssp TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 556789999999999999888763 24679998863
No 170
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.67 E-value=0.016 Score=56.13 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=82.2
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccE-EE-eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPY-CA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Pi-v~-~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
-|++.+ ..|+.++.+|.|+++.+. +|- +. +..+=+..+.+.|.+....+.|++++....+. ....-.+||....
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~--~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~-~~~~~~~~q~~d~ 110 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATG--KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPT-AGEGRGAFQEIDQ 110 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHC--CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCcc-ccccCCcccccCH
Confidence 456665 799999999999999864 443 33 44565566778888877779999999743332 2322334677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSR 605 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r 605 (748)
..+++.+-.. .+...++.++...+..|++. .++|+||-+|+
T Consensus 111 ~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 111 VALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 7888888655 66677888888888887754 26799998763
No 171
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.42 E-value=0.035 Score=54.00 Aligned_cols=114 Identities=16% Similarity=0.051 Sum_probs=78.6
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCC--CCCCCChh
Q 004509 485 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGED--GPTHQPIE 562 (748)
Q Consensus 485 p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~d--G~THq~~e 562 (748)
.-|++.+- .|+..+.+|.|.++.|. +.++.+-.+-+..+.+.+......+.||+++....+. .+.. ...||.+.
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~--~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~-~~~~~~~~~~~~~~ 116 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGA--RAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPG-PSTGLPKPDQSDLM 116 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCC--cEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCC-CCCCCCCcCcHHHH
Confidence 35777775 99999999999999985 5444566777777888877765568999999744333 2221 11233344
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALS 604 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~ 604 (748)
...+++. -.-++.+.++.|+..+++.|++. .++|++|++.
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 117 AARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4444433 56778899999988888877743 2479999863
No 172
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.27 E-value=0.025 Score=55.98 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
-|++.+ -.|++++.+|.|+++.+. +|.+.+ ..+=+..+...|.+....+.||+++....+...-..|..|+....
T Consensus 40 i~~i~~-~~E~~A~~~A~g~ar~~g--~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~ 116 (172)
T PF02776_consen 40 IRFIPV-RHEQGAAFMADGYARATG--RPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQ 116 (172)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHHS--SEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHH
T ss_pred eeeecc-cCcchhHHHHHHHHHhhc--cceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhh
Confidence 466664 899999999999996553 555543 333333455555555567999999986555543335777767778
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~irl~r~ 606 (748)
..+++.+-.. .+.+.++.++...++.|+ ...++|+||-+|+.
T Consensus 117 ~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 117 QSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp HHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 8889987754 555556666555555544 34689999999864
No 173
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.17 E-value=0.033 Score=61.18 Aligned_cols=98 Identities=21% Similarity=0.172 Sum_probs=69.3
Q ss_pred CcEEEEEEcchhc-chhhHHHHHHHHHHcCCCcEEEEEECCCCccccc-----cc------------ccccccHHHHHhh
Q 004509 231 DHYTYVILGDGCQ-MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD-----TE------------IAFTENVDKRFEG 292 (748)
Q Consensus 231 ~~~v~~iiGDG~~-~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~-----~~------------~~~~~~~~~~~~a 292 (748)
+..||++.|||.. .-| +..+..+...+.+..++++||.-|+..+. +. ....-|+..++.+
T Consensus 151 ~~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a 228 (365)
T cd03377 151 KKSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMS 228 (365)
T ss_pred ccceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHH
Confidence 3589999999954 534 55787788888755566666665654331 11 1123578888999
Q ss_pred CCcEEEE-EccCCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 293 LGWHVIW-VKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 293 ~G~~~~~-v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
+|..|+- +.=|- ++.++.+++++|.+ .+||.+|++.+.
T Consensus 229 ~g~~YVA~~s~~~-~~~~~~~~i~eA~~-~~Gps~I~v~sP 267 (365)
T cd03377 229 YGNVYVAQIALGA-NDNQTLKAFREAEA-YDGPSLIIAYSP 267 (365)
T ss_pred cCCCEEEEEeccc-CHHHHHHHHHHHhc-CCCCEEEEEEcc
Confidence 9987763 21234 89999999999998 899999999875
No 174
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.78 E-value=0.023 Score=70.90 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=78.6
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcch-hhHHHHHHHHHHcCCCcEEEEEECCCCcccc
Q 004509 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME-GIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (748)
Q Consensus 198 tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e-G~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~ 276 (748)
.-.||.+.+.++|++...+ +++||+++|||.+.- |+ -++..|...+.+.++.|++|.--++.|
T Consensus 480 ~~~MG~eg~~~~G~a~f~~--------------~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTG 543 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFTD--------------EKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTG 543 (1165)
T ss_pred eeccCCcchhhceeccccC--------------CCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccC
Confidence 3456667777777776422 467999999999874 43 368888888886666666666666665
Q ss_pred cccc---cccccHHHHHhhCCcEEEEEc--cCCCCHHHH--------------HHHHHHHHhcCCCCEEEEEE
Q 004509 277 DTEI---AFTENVDKRFEGLGWHVIWVK--NGNTGYDDI--------------RAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 277 ~~~~---~~~~~~~~~~~a~G~~~~~v~--dG~~D~~~l--------------~~al~~a~~~~~~P~vI~~~ 330 (748)
.... ....++.+.+++.|.+-+.++ |=. +++.. .++++++....+++++|+.+
T Consensus 544 gQ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~-~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~ 615 (1165)
T PRK09193 544 GQPVDGGLSVPQITRQLAAEGVKRIVVVTDEPE-KYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD 615 (1165)
T ss_pred CCCCCCCcchhhHHHHHHhCCCCEEEEeCCChh-hhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 4421 234678899999999988886 333 44433 55666666336778888765
No 175
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.77 E-value=0.024 Score=70.87 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=73.3
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcch-hhHHHHHHHHHHcCCCcEEEEEECCCCcccccc
Q 004509 200 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME-GIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (748)
Q Consensus 200 ~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e-G~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~ 278 (748)
.||.+.+.++|++.+.. +++|++++|||.+.- |+. ++..|...+.+.+++|++|.--++.|..
T Consensus 469 ~MG~~g~~~~G~a~~~~--------------~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQ 532 (1159)
T PRK13030 469 QMGGEGVDWIGHAPFTE--------------TKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQ 532 (1159)
T ss_pred ccCccchhhceeccccC--------------CCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCC
Confidence 46666677777776532 457999999999875 444 8889999997555555555555665544
Q ss_pred ccc---ccccHHHHHhhCCcEEEEEc--cCCCC-----HH--------HHHHHHHHHHhcCCCCEEEEEE
Q 004509 279 EIA---FTENVDKRFEGLGWHVIWVK--NGNTG-----YD--------DIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 279 ~~~---~~~~~~~~~~a~G~~~~~v~--dG~~D-----~~--------~l~~al~~a~~~~~~P~vI~~~ 330 (748)
..- ..+.+....++.|.+.+.++ |=. + +. +..++++++....++|++|+.+
T Consensus 533 p~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~-~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~~ 601 (1159)
T PRK13030 533 PVDGSISVPQIARQVEAEGVSRIVVVSDEPE-KYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIYD 601 (1159)
T ss_pred CCCCCCCHHHHHHHHHhCCCcEEEEecCChh-hccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 322 22334448889999988875 211 1 22 3445566665325788888754
No 176
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.61 E-value=0.2 Score=62.94 Aligned_cols=204 Identities=11% Similarity=-0.037 Sum_probs=122.0
Q ss_pred CccccccchHHHHHHHHHHHhcCC-------CCccEEEeehhHHHHHHHHHHHhhcc----CCCeEEEEecCCCccCCCC
Q 004509 487 RNVRFGVREHGMGAICNGIALHSP-------GLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLGEDG 555 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~-------~~~Piv~~f~~F~~r~~dqIr~~a~~----~~pVi~v~t~~g~~~g~dG 555 (748)
-+|+.|+.|--...++.|-+..|. |.+-+++.=.+=++++-|.++...|. +-.|+++...|-...+
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~S--- 151 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVS--- 151 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCcc---
Confidence 678899999999999999995442 02335554445567899998865543 4467766643322111
Q ss_pred CCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCC--------CCCCCCCccc
Q 004509 556 PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKL--------PHLAGTSIDG 618 (748)
Q Consensus 556 ~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~------r~~~--------~~~~~~~~~~ 618 (748)
-|--.|--++...-+|-|+.|+|+.|+..+.+.+++ ..+-|+.+|.. ++.+ +..+.. ..
T Consensus 152 --Sq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~--f~ 227 (1159)
T PRK13030 152 --SSMPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPED--FT 227 (1159)
T ss_pred --CcCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccc--cC
Confidence 111222233344445669999999999999998874 24679999852 1111 001100 00
Q ss_pred cccc----eeEE--------------------------ec-CCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCC-----c
Q 004509 619 VEKG----AYII--------------------------SD-NSSGNKPDVILIGTGSELEIAAKAAEELRKGGK-----A 662 (748)
Q Consensus 619 ~~~G----~~~v--------------------------~~-~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi-----~ 662 (748)
.+.| +|.. .+ .-.+.+.++-||++|....-+.||.+.|...++ .
T Consensus 228 ~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lg 307 (1159)
T PRK13030 228 PPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAG 307 (1159)
T ss_pred CCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccC
Confidence 0010 0000 00 000013579999999999999999888754332 3
Q ss_pred EEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccc
Q 004509 663 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 701 (748)
Q Consensus 663 v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~ 701 (748)
++|+-+-...||+.+.+. ...+ +...|+||||...
T Consensus 308 irilKvgm~~PL~~~~i~---~F~~-g~d~VlVVEE~~p 342 (1159)
T PRK13030 308 IRIYKVGLSWPLEPTRLR---EFAD-GLEEILVIEEKRP 342 (1159)
T ss_pred ccEEEeCCccCCCHHHHH---HHHh-cCCEEEEEeCCch
Confidence 566666676699988653 2232 3334799999865
No 177
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.34 E-value=0.1 Score=51.03 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=65.5
Q ss_pred ccchHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHhh-ccCCCeEEEEecCCCccCCCCCCC--CChhhhHHHh
Q 004509 492 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA-LCEAGVIYVMTHDSIGLGEDGPTH--QPIEHLASFR 568 (748)
Q Consensus 492 GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a-~~~~pVi~v~t~~g~~~g~dG~TH--q~~edia~lr 568 (748)
.-+|...+++|+|..+.|+ +|.+++-.+-+..+.+.+.... ..+.||+++.+.-|- .|++-+.| ++......|.
T Consensus 40 ~~~ee~aa~~aAg~~~~~~--~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~g~~~~~~l~ 116 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGK--KPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPMGRATPKLLD 116 (157)
T ss_pred cCChHHHHHHHHHHHHhcC--CcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccchhhhhHHHHH
Confidence 5788999999999998886 7777654444445666666655 678999999854433 23321122 2222222222
Q ss_pred --cCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004509 569 --AMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 606 (748)
Q Consensus 569 --~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r~ 606 (748)
.+| .....+++++ ..++.|++ +.++|++|.+++.
T Consensus 117 ~~~i~---~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 117 TLGIP---YTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred HcCCC---eEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 334 4444556666 55555552 2359999998764
No 178
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.02 E-value=0.066 Score=66.92 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=71.8
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcch-hhHHHHHHHHHHcCCCcEEEEEECCCCcccccc
Q 004509 200 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME-GIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (748)
Q Consensus 200 ~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e-G~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~ 278 (748)
.||.+...++|++... .+.+|++++|||.+.- |+ -++..|...+.+.++.|++|.--++.|..
T Consensus 496 ~MGgeg~~~~G~a~f~--------------~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQ 559 (1186)
T PRK13029 496 QMGGEGVAWIGQMPFS--------------RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQ 559 (1186)
T ss_pred ccCcchhhheeecccC--------------CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCC
Confidence 3555555566665432 1467999999999875 43 36888888887656666666655666544
Q ss_pred cc---cccccHHHHHhhCCcEEEEEcc--CCCCHH--------------HHHHHHHHHHhcCCCCEEEEEE
Q 004509 279 EI---AFTENVDKRFEGLGWHVIWVKN--GNTGYD--------------DIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 279 ~~---~~~~~~~~~~~a~G~~~~~v~d--G~~D~~--------------~l~~al~~a~~~~~~P~vI~~~ 330 (748)
.. ...+.+....++.|.+-+.|+| =. +++ +..++++++....+++++|+.+
T Consensus 560 p~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~-~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 560 PVDGVLTVPQIARQVHAEGVRRIVVVTDEPG-KYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred CCCCcCCHHHHHHHHHhCCccEEEEeCCCcc-ccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 32 2234455588999998888865 11 232 3345555555335678888765
No 179
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.89 E-value=0.21 Score=49.09 Aligned_cols=114 Identities=17% Similarity=0.074 Sum_probs=74.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
|++.+ -.|++.+.+|-|+|.... +|-++ +..+-+..+..-|.+.-..+.||+++....... ..+-.+||.+.+.
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~d~~ 112 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASG--RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPE-LRGTGANQTIDQV 112 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhC--CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHH-hcCCCCCcccchh
Confidence 55554 789999999999997553 56553 466666666666666667899999997332222 2223357878878
Q ss_pred HHHhcCCCc--EEEeeCC-------HHHHHHHHHHHHHcCCCcEEEEEc
Q 004509 565 ASFRAMPNI--LMLRPAD-------GNETAGAYKVAVANRKRPSILALS 604 (748)
Q Consensus 565 a~lr~iPnl--~V~~Psd-------~~e~~~~l~~a~~~~~~P~~irl~ 604 (748)
.+++.+=.. +|-.|.+ +..+..+++.|.....||++|-+|
T Consensus 113 ~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 113 GLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 888876654 3334444 445555666665445789999764
No 180
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.60 E-value=0.34 Score=47.19 Aligned_cols=76 Identities=20% Similarity=0.154 Sum_probs=56.7
Q ss_pred hhHHHHHH-HHHHcCCCcEEEEEECCCCcc--cccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcC
Q 004509 246 GIANEASS-LAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVT 321 (748)
Q Consensus 246 G~~~Eal~-~A~~~~L~~li~Ivd~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~ 321 (748)
...++.+. .++.+++ |++++....+++. ++++.. ..+....++.+ |+.++.+ .|..++...++++.+ .
T Consensus 75 ~ra~dqi~~~~a~~~~-pv~~~~~~~g~~~~~~G~tH~--~~~~~a~~~~iPg~~v~~P----s~~~~~~~ll~~a~~-~ 146 (156)
T cd07033 75 QRAYDQIRHDVALQNL-PVKFVGTHAGISVGEDGPTHQ--GIEDIALLRAIPNMTVLRP----ADANETAAALEAALE-Y 146 (156)
T ss_pred HHHHHHHHHHHhccCC-CeEEEEECCcEecCCCCcccc--hHHHHHHhcCCCCCEEEec----CCHHHHHHHHHHHHh-C
Confidence 36788877 8888887 7888888766654 554432 22334567776 9999998 599999999999998 6
Q ss_pred CCCEEEEE
Q 004509 322 DKPTLIRV 329 (748)
Q Consensus 322 ~~P~vI~~ 329 (748)
++|++|..
T Consensus 147 ~~P~~irl 154 (156)
T cd07033 147 DGPVYIRL 154 (156)
T ss_pred CCCEEEEe
Confidence 77999864
No 181
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.47 E-value=0.48 Score=46.58 Aligned_cols=115 Identities=10% Similarity=-0.035 Sum_probs=76.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
|++. .-.|++++.+|.|+|.... +|-++ +..+=+..+...+.+....+.||+++........ .....+|.+...
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg--~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~-~~~~~~q~~d~~ 115 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTG--KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDE-LGTDYFQEVDLL 115 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccc-cCCCCCcccCHH
Confidence 4554 4789999999999998643 45543 4555555566666666678999999973222211 112247878888
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcCC
Q 004509 565 ASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSRQ 606 (748)
Q Consensus 565 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~r~ 606 (748)
.+++.+-.+ ...+.++.++..+++.|++. ..+|+||-+|+.
T Consensus 116 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 116 ALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 889888764 44555777777666666632 469999998764
No 182
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=94.33 E-value=0.6 Score=58.77 Aligned_cols=200 Identities=13% Similarity=0.040 Sum_probs=122.1
Q ss_pred CCccccccchHHHHHHH---------HHHHhcCCCCccEEEeehhHHHHHHHHHHHhhcc----CCCeEEEEecCCCccC
Q 004509 486 ERNVRFGVREHGMGAIC---------NGIALHSPGLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLG 552 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~A---------aGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~a~~----~~pVi~v~t~~g~~~g 552 (748)
+-+|+.|+.|.-...++ .|-+..| .+-+++.=.+=++++-|.++-..+. +-.|+++...|-...+
T Consensus 82 ~i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~G--v~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~S 159 (1165)
T PRK09193 82 DIVFQPGLNEDLAATAVWGSQQVNLFPGAKYDG--VFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKS 159 (1165)
T ss_pred ceEEeeccCHHHHHHHHhhhcccccccceeecc--ceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCcc
Confidence 36778999999999999 5557777 3667666566678999998765443 4467766543322111
Q ss_pred CCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCC-----C---CCCCCC
Q 004509 553 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKL-----P---HLAGTS 615 (748)
Q Consensus 553 ~dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~------r~~~-----~---~~~~~~ 615 (748)
. =.-|| .+..+.+ -+|-|+.|+|..|+..+.+.+++ ..+-|+.+|.. +..+ + ..+.
T Consensus 160 S-q~eqd-Sr~~~~~---a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~-- 232 (1165)
T PRK09193 160 S-TLPHQ-SEHAFKA---AGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE-- 232 (1165)
T ss_pred c-cchhh-hHHHHHH---cCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--
Confidence 0 01122 2333334 45569999999999999998874 24679999852 1111 0 0110
Q ss_pred ccccccc----eeEE--------------------------ec-CCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc--
Q 004509 616 IDGVEKG----AYII--------------------------SD-NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA-- 662 (748)
Q Consensus 616 ~~~~~~G----~~~v--------------------------~~-~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~-- 662 (748)
....+.| .|.. .+ .-+..+.++-||++|-...-+.+|.+.| |++
T Consensus 233 ~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~ 309 (1165)
T PRK09193 233 DFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEE 309 (1165)
T ss_pred cccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChh
Confidence 0011111 1100 00 0000135799999999988888776654 454
Q ss_pred ------EEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccc
Q 004509 663 ------VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 701 (748)
Q Consensus 663 ------v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~ 701 (748)
++|+-+-...||+.+.+. ...+ +...|+||||...
T Consensus 310 ~~~~~gi~ilKvgm~~PL~~~~i~---~Fa~-g~~~vlVVEE~~p 350 (1165)
T PRK09193 310 TAARLGIRLYKVGMVWPLEPQGVR---AFAE-GLDEILVVEEKRQ 350 (1165)
T ss_pred hhcccCCCEEEeCCCCCCCHHHHH---HHHh-cCCEEEEEecCch
Confidence 788888888899988663 2222 3334799999754
No 183
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=93.68 E-value=0.41 Score=50.87 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred EEEEEEcchh--cchhhHHHHHHHHHHcCCCcEEEEEECC--CCccccccccc---ccc-cHHHHHhhCCcEEEEEccCC
Q 004509 233 YTYVILGDGC--QMEGIANEASSLAGHLGLGKLIAFYDDN--HISIDGDTEIA---FTE-NVDKRFEGLGWHVIWVKNGN 304 (748)
Q Consensus 233 ~v~~iiGDG~--~~eG~~~Eal~~A~~~~L~~li~Ivd~N--~~~i~~~~~~~---~~~-~~~~~~~a~G~~~~~v~dG~ 304 (748)
+++.++.||+ ..+|..-+++..|...++..+++++|+. .-+|....... ... .+..+|+.|+++|..|+ +
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~--~ 243 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV--R 243 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe--c
Confidence 8999999999 8899888888999999997788888775 45655332211 112 67889999999999886 4
Q ss_pred CCHHHHHHHHHHHHh
Q 004509 305 TGYDDIRAAIKEAKA 319 (748)
Q Consensus 305 ~D~~~l~~al~~a~~ 319 (748)
|+.+|-+.|..+..
T Consensus 244 -~~~~lp~~l~~~lr 257 (266)
T cd01460 244 -DLNQLPSVLSDALR 257 (266)
T ss_pred -ChhHhHHHHHHHHH
Confidence 99988888876653
No 184
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=93.49 E-value=0.47 Score=55.51 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=75.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++.+ -.|++++.+|.|+|.... +|-++. -.+-+..+..-|..+...+.||+++........-..+..+|.+..
T Consensus 49 i~~i~~-~hE~~A~~~Adgyar~tg--~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~ 125 (530)
T PRK07092 49 FRYVLG-LQEAVVVGMADGYAQATG--NAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQA 125 (530)
T ss_pred CCEEEE-ccHHHHHHHHHHHHHHhC--CceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCH
Confidence 366654 899999999999998553 566542 334444566666666677999998863322222122333444566
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
..+++.+-...... .++.++..+++.|++ ...||+||-+|+.
T Consensus 126 ~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 78888887755544 556776666666554 2368999999864
No 185
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=93.22 E-value=1.1 Score=44.36 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHH-HHHHHc--------CCCcEEEEEECCCCcc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SLAGHL--------GLGKLIAFYDDNHISI 274 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal-~~A~~~--------~L~~li~Ivd~N~~~i 274 (748)
.++.|.|+|+. ..++|+-+.=+.|.. -.+|-+ +.++.+ ++ |++++...-++.-
T Consensus 56 ~vg~AaGlA~~----------------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~-pv~i~~~~gg~~~ 117 (167)
T cd07036 56 IVGLAVGAAMN----------------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKV-PIVIRGPNGGGIG 117 (167)
T ss_pred HHHHHHHHHHc----------------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccC-CEEEEEeCCCCCC
Confidence 34667777763 335555444455543 466665 344544 35 7888887666554
Q ss_pred cccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004509 275 DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 328 (748)
Q Consensus 275 ~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~ 328 (748)
++.+. ..++ ...++++ |+.++.+ .|..+...+++.+.+ .++|++|.
T Consensus 118 ~G~th--s~~~-~a~lr~iPg~~V~~P----sd~~e~~~~l~~~~~-~~~P~~~~ 164 (167)
T cd07036 118 GGAQH--SQSL-EAWFAHIPGLKVVAP----STPYDAKGLLKAAIR-DDDPVIFL 164 (167)
T ss_pred cChhh--hhhH-HHHHhcCCCCEEEee----CCHHHHHHHHHHHHh-CCCcEEEE
Confidence 55542 2334 5788887 9999999 599999999999987 77899884
No 186
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.02 E-value=0.37 Score=61.35 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=70.6
Q ss_pred cEEEEEEcchhc-chhhHHHHHHHHHHcCCCcEEEEEECCCCcccc-----ccc------------ccccccHHHHHhhC
Q 004509 232 HYTYVILGDGCQ-MEGIANEASSLAGHLGLGKLIAFYDDNHISIDG-----DTE------------IAFTENVDKRFEGL 293 (748)
Q Consensus 232 ~~v~~iiGDG~~-~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~-----~~~------------~~~~~~~~~~~~a~ 293 (748)
..||++.|||.. .-| +..+..+...+.+..++++||.-|+..+ .+. ....-|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 579999999944 544 4578888888876666666666665543 111 11235788889999
Q ss_pred CcEEEEEcc-CCCCHHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 294 GWHVIWVKN-GNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 294 G~~~~~v~d-G~~D~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
|..|+--.- |- ++.++.+++++|.+ .+||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~-~~~~~~~~~~~A~~-~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGA-NMQQTLKAFREAEA-YDGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEeccc-CHHHHHHHHHHHHc-CCCCEEEEEECC
Confidence 987764323 54 79999999999987 899999999875
No 187
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=92.50 E-value=1.7 Score=54.79 Aligned_cols=199 Identities=16% Similarity=0.078 Sum_probs=117.1
Q ss_pred CccccccchHHHHH---------HHHHHHhcCCCCccEEEeehhHHHHHHHHHHHh--hcc--CCCeEEEEecCCCccCC
Q 004509 487 RNVRFGVREHGMGA---------ICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS--ALC--EAGVIYVMTHDSIGLGE 553 (748)
Q Consensus 487 R~id~GIaE~~~vg---------~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~--a~~--~~pVi~v~t~~g~~~g~ 553 (748)
=+|+.|+.|.-..+ ++.|-+..| .+-+++.=.+=++++-|.++-. ++. +-.|+++...|-...+
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dG--v~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S- 162 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDG--VFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS- 162 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeecc--ceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc-
Confidence 67788999998844 444445566 3566665556678999998754 354 4457666644322111
Q ss_pred CCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC---C-----CCCCCCc
Q 004509 554 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL---P-----HLAGTSI 616 (748)
Q Consensus 554 dG~THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r------~~~---~-----~~~~~~~ 616 (748)
-.+-|..+..... -+|-|+.|+|..|+..+...+++ ..+-|+.+|... ..+ + ..+. +
T Consensus 163 -Sq~eqdSr~~~~~---a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~-~- 236 (1186)
T PRK13029 163 -SSVAHQSDHTFIA---WGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD-D- 236 (1186)
T ss_pred -ccCHHHHHHHHHH---cCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc-c-
Confidence 1111222333334 45569999999999999998874 246799998531 111 0 0110 0
Q ss_pred cccccce----eE--------------------------Eec-CCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc---
Q 004509 617 DGVEKGA----YI--------------------------ISD-NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA--- 662 (748)
Q Consensus 617 ~~~~~G~----~~--------------------------v~~-~~~~~g~dvtlva~G~~v~~al~Aa~~L~~~Gi~--- 662 (748)
...+.|+ |. +.+ .-.++..++-||++|....-+.+|.+.| |++
T Consensus 237 f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~~ 313 (1186)
T PRK13029 237 FVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDAT 313 (1186)
T ss_pred ccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChhh
Confidence 0001110 00 000 0000136799999999998888876655 443
Q ss_pred -----EEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccc
Q 004509 663 -----VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 701 (748)
Q Consensus 663 -----v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~ 701 (748)
++|+-+-...||+.+.+. ... .+...|+||||...
T Consensus 314 ~~~~gi~ilKvgm~~PL~~~~i~---~Fa-~g~d~vlVVEE~~p 353 (1186)
T PRK13029 314 CAALGIRLLKVGCVWPLDPQSVR---EFA-QGLEEVLVVEEKRA 353 (1186)
T ss_pred ccccCCCEEEeCCCCCCCHHHHH---HHH-hcCCEEEEEecCch
Confidence 788888888899988663 222 23344799999754
No 188
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=92.21 E-value=5.6 Score=41.59 Aligned_cols=118 Identities=12% Similarity=-0.024 Sum_probs=64.8
Q ss_pred CCCCccccccchHHHHHHHHHHHh----c-----CCCCccEEEeehh--HHHHHHHHHHHhhccCCCeEEEEecCCCccC
Q 004509 484 PEERNVRFGVREHGMGAICNGIAL----H-----SPGLIPYCATFFV--FTDYMRAAIRISALCEAGVIYVMTHDSIGLG 552 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA~----~-----G~~~~Piv~~f~~--F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g 552 (748)
+|.++++..+.-...+|.+...|+ . -. =+|++.+-.+ |++..+..+-.....++||++++-..+. +|
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p-~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~-yg 128 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDK-KKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEV-YS 128 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCC-CCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCcc-cc
Confidence 455666665444455554433332 2 11 2677766444 4433333333344578998888766553 33
Q ss_pred CCCCCCCC------------------hhhhH-HHh--cCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 553 EDGPTHQP------------------IEHLA-SFR--AMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 553 ~dG~THq~------------------~edia-~lr--~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
.-+.+++. .-|.+ +.+ .++......+.++.|++.+|+.+++..++|++|-.
T Consensus 129 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 129 NTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22211110 01222 222 34444444699999999999999952589999865
No 189
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.20 E-value=0.91 Score=53.25 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=77.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
|++.+ ..|++++.+|-|+|..-+ +|-+ .++.+-+..+..-|.++...+.||+++....... .+ -..||.+.+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~ 112 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITG--KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDN 112 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhC--CceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccch
Confidence 56665 699999999999996442 4433 3566766666666766667789999997322222 23 234888888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
..+++.+-.... ...++.++...++.|++ ...||+||-+|+.
T Consensus 113 ~~~~~~~tk~~~-~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 113 VALFRPITKYSA-EVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhhhhcceeeee-ecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 899998776433 33566666666655543 2468999999875
No 190
>PRK05858 hypothetical protein; Provisional
Probab=92.15 E-value=1.1 Score=52.57 Aligned_cols=116 Identities=10% Similarity=0.040 Sum_probs=78.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++.+ .-|++++.+|-|+|.... +|-++ +..+=+..+...|.++-..+.||+++........ .+-.++|.+..
T Consensus 43 i~~i~~-rhE~~A~~~AdGyar~tg--~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~ 118 (542)
T PRK05858 43 IRLIDV-RHEQTAAFAAEAWAKLTR--VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALR-WGMGSLQEIDH 118 (542)
T ss_pred CCEEee-ccHHHHHHHHHHHHHhcC--CCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCccc-CCCCCCcccch
Confidence 466665 899999999999998743 55553 4455455566667666678999998863222221 11234677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
.++++.+-.. .....++.++...++.|++ ...||+||-+|+.
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 119 VPFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 8888887763 4444567777766666653 2468999999875
No 191
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=91.78 E-value=1.1 Score=52.69 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=77.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++.+ ..|++++.+|.|+|.... +|-++ ++.+-+..+..-|..+-..+.||+++........-..+ .+|.+..
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTG--RPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRERE-AFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcC--CCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-cccccCH
Confidence 356665 889999999999997653 55553 56676666666676666789999998732222211122 3577777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
..+++.+=...... .++.++..+++.|++ ..+||+||-+|+.
T Consensus 123 ~~l~~~~tk~~~~v-~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 123 RRMFGPMAKWVAEI-DDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHhhhhhhceeeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 88888776654443 567776666666554 2468999999865
No 192
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=91.76 E-value=1.2 Score=44.99 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=61.0
Q ss_pred CCCEEEEEeChhH-HHHHHHHHHHHhC--CCcEEEEecCChhhHHHHH-------HHHhhhhccCCCceEEEEccccc--
Q 004509 634 KPDVILIGTGSEL-EIAAKAAEELRKG--GKAVRVVSFVSWELFDEQS-------DAYKESVLPAAVSARVSIEAGST-- 701 (748)
Q Consensus 634 g~dvtlva~G~~v-~~al~Aa~~L~~~--Gi~v~VId~~~l~pld~~~-------~~~~~~v~~~~~~~vv~vE~~~~-- 701 (748)
.+||+|.++|... .++++|++.|++. +++++|||+..+.-|-... .+-..+++-+.+++++...-+..
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFafHGYp~~i 113 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFAFHGYPWLI 113 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEEESSEHHHH
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEEcCCCHHHH
Confidence 6899999999976 7999999999987 9999999998876553211 01123556556664333222110
Q ss_pred cC--cchhhcCCccEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 004509 702 FG--WEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 746 (748)
Q Consensus 702 ~G--~~~~v~~~~~~ig~d~f~~~G~~~~l~~~~gl~~e~I~~~i~~ 746 (748)
.+ +++--..++..-|..+=|..-++=+++-..++|-=+++..+.+
T Consensus 114 ~~L~~~R~n~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~dai~ 160 (203)
T PF09363_consen 114 HRLLFGRPNHDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDAIR 160 (203)
T ss_dssp HHHTTTSTTGGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHHHH
T ss_pred HHHhcCCCCCCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHHHH
Confidence 01 1111011223334433344445667888888888777765543
No 193
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.55 E-value=0.78 Score=54.24 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=77.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++.+ -.|++++.+|-|+|.... +|-++ ++.+=+..+..-|.++-..+.||+++........-..| .||.++.
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q~~d~ 118 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATG--KTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGED-AFQETDM 118 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC-cccccch
Confidence 456665 899999999999996443 45443 46665566666677666789999999733332211122 4777788
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
..+++.+-... +...++.++..+++.|++ ...||+||-+|+.
T Consensus 119 ~~l~~~itk~s-~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 119 VGISRPIVKHS-FMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhhhccceeE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 88888877643 334466666666665553 2369999999886
No 194
>PRK07586 hypothetical protein; Validated
Probab=91.48 E-value=1.4 Score=51.32 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=72.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
|++.+ --|++.+.+|.|+|.... +|-++ ++.+=+..+..-|.++-..+.||+++....... ...-..||.....
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~-~~~~~~~q~~d~~ 116 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAG--KPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATY-HRKYDAPLTSDIE 116 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHC--CCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchh-ccCCCcccccchh
Confidence 66665 889999999999997543 55543 456655555555665566799999987322211 1111235656666
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCCC
Q 004509 565 ASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQK 607 (748)
Q Consensus 565 a~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~irl~r~~ 607 (748)
.+++.+=. -.+...++.++..+++.|+ ....||+||-+|+.-
T Consensus 117 ~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 117 ALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred hhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 77776543 2334555555555555444 334799999998753
No 195
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.27 E-value=1.1 Score=52.97 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++. ..-|++++.+|.|+|.... +|-+ .++.+=+..++..|..+-+.+.||+++....... .+. ..+|.+.
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 126 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTG--KPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVD 126 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcC--CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccc
Confidence 46777 4899999999999998653 5644 3566666666677777667899999987332222 122 2467777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
..++++.+--...-. .++.++..+++.|++. ..||+||-+|+.
T Consensus 127 ~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 127 TYGISIPITKHNYLV-RDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhhccceEEEEc-CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 778888776654443 4677777777766642 369999999864
No 196
>PRK07064 hypothetical protein; Provisional
Probab=91.23 E-value=1.6 Score=51.13 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=76.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCC-CCCCCChh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPIE 562 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~d-G~THq~~e 562 (748)
|++.+ ..|++++.+|.|+|.... +|-| .++.+=+..+...|..+-..+.||+++....... .+.+ +..||.+.
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 119 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSG--GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPD 119 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcC--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccC
Confidence 56654 889999999999997542 4444 3566655566666776667899999987322221 2322 23566667
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
...+++.+-... +...++.++..+++.|++ ..+||+||-+|..
T Consensus 120 ~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 120 QLTMLRAVSKAA-FRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHHhhhhcceE-EEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 888888777643 334556666655555553 2479999999875
No 197
>PRK07524 hypothetical protein; Provisional
Probab=91.22 E-value=1.5 Score=51.36 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=77.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCcc-EEE-eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCC-CCCCCChh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPIE 562 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~P-iv~-~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~d-G~THq~~e 562 (748)
|++.+ -.|++++.+|-|+|.... +| +|. +..+=+..+..-|.++-..+.||+++....... .+.+ +..|+.+.
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d 117 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSG--KPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPD 117 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCcccccccc
Confidence 56665 889999999999996543 55 332 456655556666666667899999987322221 2322 34566556
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
...+++.+=- -.+...++.++...++.|++ ...||+||-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 118 QRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 7788887664 44566667777777776663 2479999999875
No 198
>PRK08322 acetolactate synthase; Reviewed
Probab=91.20 E-value=1.4 Score=51.82 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=77.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ ..|++++.+|.|+|.... +|-++ +..+=+..+..-|.++-..+.||+++....... .+. + .||.+.
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~-~-~~q~~d 113 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTG--KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQ-G-SFQIVD 113 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhC--CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCC-C-cccccc
Confidence 355554 899999999999997643 45543 455655556666666667899999987322222 122 2 367677
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
...+++.+-. ..+...++.++..+++.|++. ..||+||-+|+.
T Consensus 114 ~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 114 VVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 7788887665 345566777777766666542 468999999875
No 199
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.18 E-value=0.96 Score=53.55 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=76.8
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++.+ .-|++++.+|.|+|.... +|-++ +-.+.+..+..-|.++-..+.||+++........ .+-..+|.+..
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~-~~~~~~Q~~d~ 125 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSG--KVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQ-TDRNAFQELDH 125 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccc-CCCCCccccCh
Confidence 466665 799999999999997532 56554 4556666666667666677999999873322222 12234677778
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~irl~r~ 606 (748)
..+++.+-.. .+...++.++...++.|+ ....||+||-+|..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 126 IALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 8888877764 233445555555555554 33468999999865
No 200
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=90.84 E-value=2.7 Score=41.20 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=70.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE-eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCC-----
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQ----- 559 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~-~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq----- 559 (748)
|++. .-.|++.+.+|.|++...+ ..+|. +-.+=+..+...|.+....+.||+++....... .+.....|+
T Consensus 37 ~~i~-~rhE~~A~~mA~gyar~t~--~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWVG-NCNELNAGYAADGYARVKG--LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEEe-eCCHHHHHHHHHHHHHhhC--CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 4554 4889999999999998763 33433 344555556666666666799999997332221 222122232
Q ss_pred Chh-hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC
Q 004509 560 PIE-HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR 605 (748)
Q Consensus 560 ~~e-dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl~r 605 (748)
.++ +..+++.+=.+..- ..++.++..+++.|++. .++|+||-+||
T Consensus 114 ~~~d~~~~~~~~tk~~~~-v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCAAAR-LTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeEEEE-eCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 233 36778766554433 34666666666655532 35899998876
No 201
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.75 E-value=1.3 Score=51.98 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=78.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
|++.+ ..|++.+.+|-|+|..-. +|-++ ++.+=+..+...+.++-..+.||+++....... .+. | .+|.+..
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg--~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 114 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATG--KVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGT-D-AFQEIDV 114 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-C-CCcccch
Confidence 55555 899999999999997543 45543 566666666667776667899999997433322 132 2 3677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
.++++.+-...... .++.++..+++.|++. .+||+||-+|+.
T Consensus 115 ~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 115 LGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred hccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 78888777655544 3677777777766642 369999999874
No 202
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=90.73 E-value=5.6 Score=39.48 Aligned_cols=105 Identities=18% Similarity=0.066 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcch---hhHHHHHH-HHHHcCCCcEEEEEECC-CCcccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME---GIANEASS-LAGHLGLGKLIAFYDDN-HISIDGDT 278 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e---G~~~Eal~-~A~~~~L~~li~Ivd~N-~~~i~~~~ 278 (748)
.++.|.|+|++.+ .+.++..-=+.|.. -..++.+. ..+..++ |+.+++... +++.++.+
T Consensus 60 ~vg~a~GlA~~G~---------------~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~-~v~v~~~~g~~~~~~G~t 123 (178)
T PF02779_consen 60 MVGMAAGLALAGG---------------LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQL-PVPVGTRAGLGYGGDGGT 123 (178)
T ss_dssp HHHHHHHHHHHSS---------------SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS--EEEEEEESGGGSTTGTT
T ss_pred ccceeeeeeeccc---------------ccceeEeeccccccccchhhhhhhhhhhhcccc-eecceeecCccccccccc
Confidence 4577888887531 12333333344443 35677776 7778887 454433332 34555544
Q ss_pred cccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhc-CCCCEEEEEE
Q 004509 279 EIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIRVT 330 (748)
Q Consensus 279 ~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~-~~~P~vI~~~ 330 (748)
. ...+....++++ ||.++.+ .|..++..+++.+.+. .++|++|...
T Consensus 124 H--~s~~d~~~~~~iPg~~v~~P----sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 124 H--HSIEDEAILRSIPGMKVVVP----SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp T--SSSSHHHHHHTSTTEEEEE-----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred c--cccccccccccccccccccC----CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 3 233456678887 9999999 5999999999999873 4789998654
No 203
>PRK08617 acetolactate synthase; Reviewed
Probab=90.62 E-value=1 Score=52.95 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=77.3
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ ..|++++.+|.|+|.... +|-++ +..+=+..+..-+.++...+.||+++....... .+. ..||.+.
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d 117 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTG--KPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMD 117 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcC--CCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccc
Confidence 456665 889999999999998643 45443 456655556666666666789999987322222 232 2478888
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
...+++.+-.. .+.-.++.++..+++.|++ ...||+||-+|+.
T Consensus 118 ~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 118 NVALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 88889887653 3444566676666666654 2468999999865
No 204
>PRK11269 glyoxylate carboligase; Provisional
Probab=90.60 E-value=1.9 Score=51.22 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=77.6
Q ss_pred CCccccccchHHHHHHHHHHHhcC-CCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCCh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHS-PGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 561 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G-~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ 561 (748)
=|++.+ .-|++++.+|-|+|... . +|-+ .++.+-+..+..-+.++-..+.||+++....... .+. ..+|.+
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~ 117 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAV 117 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--Cccccc
Confidence 367776 89999999999999754 3 3443 3577766666666666667799999987332222 122 236777
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 562 EHLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 562 edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
....+++.+=-... ...++.++..+++.|++. ..||+||-+|+.
T Consensus 118 d~~~l~~~itk~s~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 118 DIESIAKPVTKWAV-TVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred ChhhHhhcceeEEE-EcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 77888887655433 346667777777666542 468999999875
No 205
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=90.56 E-value=2.1 Score=40.76 Aligned_cols=85 Identities=18% Similarity=0.091 Sum_probs=51.5
Q ss_pred cchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHH
Q 004509 239 GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK 318 (748)
Q Consensus 239 GDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~ 318 (748)
|.|..+ ..+++..|...++ |+++|..+.+....+ .......+....++.+.+-...+.+-.+..+.+.++++.+.
T Consensus 68 gpg~~~---~~~~l~~a~~~~~-Pvl~i~~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 142 (154)
T cd06586 68 GTGLLN---AINGLADAAAEHL-PVVFLIGARGISAQA-KQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAY 142 (154)
T ss_pred CCcHHH---HHHHHHHHHhcCC-CEEEEeCCCChhhhc-cCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHh
Confidence 788764 7788888888887 788888666543211 11112234466778876655555211113445666666665
Q ss_pred hcCCCCEEEEE
Q 004509 319 AVTDKPTLIRV 329 (748)
Q Consensus 319 ~~~~~P~vI~~ 329 (748)
. ..+|++|.+
T Consensus 143 ~-~~gPv~l~i 152 (154)
T cd06586 143 A-SQGPVVVRL 152 (154)
T ss_pred c-CCCCEEEEc
Confidence 5 478999875
No 206
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=90.54 E-value=1.5 Score=51.95 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=75.9
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCCh
Q 004509 485 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 561 (748)
Q Consensus 485 p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ 561 (748)
+=+++.+ .-|++.+.+|.|+|...+ +|-++ ++.+=+..++.-|.++-..+.||+++....... .+. | .+|.+
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~-~-~~q~~ 127 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISG--KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGS-D-AFQEA 127 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Ccccc
Confidence 4577866 899999999999997543 45443 456655555566666566799999986322221 122 2 35667
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 562 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 562 edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
+..++++.+-.... ...++.++..+++.|++ ..+||+||-+|+.
T Consensus 128 d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 128 DIMGITMPVTKHNY-QVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred chhhhhhcccceEE-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 77888887765544 33455566666655553 2369999999874
No 207
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=90.51 E-value=2 Score=50.61 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=77.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
|++.+ -.|++++.+|-|+|..-. +|-+ .++.+=+..+..-|..+-..+.||+++...... .......+|.++..
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~ 116 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASG--KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPT-SLIGSDAFQEADIL 116 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCc-cccCCCCCcccChh
Confidence 67765 899999999999996442 4444 356665555666676666789999999732222 11112346777777
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 565 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 565 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
.+++.+=....- ..++.++..+++.|++. ..||+||-+|+.
T Consensus 117 ~~~~~~tk~~~~-v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 117 GITMPITKHSFQ-VKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hhhcCccceeEE-eCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 888876664443 35677777777777642 368999999875
No 208
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=90.48 E-value=1.7 Score=51.27 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=77.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
|++.+ .-|++++.+|.|+|..-+ +|-++ ++.+-+..+...|.++-..+.||+++....... .+. + .+|.+..
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 119 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASG--VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGK-M-AFQEADA 119 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhC--CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccCC-C-Cccccch
Confidence 55554 889999999999997532 55554 577777767777777667899999997332222 132 2 3566667
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
..+++.+-....-. .++.++..+++.|++ ...||+||-+|+.
T Consensus 120 ~~i~~~~tk~~~~v-~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 120 MGVFENVTKYVIGI-KRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhhccceeEEEe-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 78888777654444 566676666666553 2469999999864
No 209
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.45 E-value=2.2 Score=50.69 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=76.7
Q ss_pred CccccccchHHHHHHHHHHHhcC-CCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHS-PGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G-~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
|++.+ --|++++.+|-|+|... + +|-|+ ++.+=+..+...|.++-..+.||+++......... ....+|.+..
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g--~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~-~~~~~q~~D~ 118 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARL-HKEDFQAVDI 118 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCC--CeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc-CCCcccccCH
Confidence 56654 67999999999999753 3 44443 45554455556666666679999999743332211 1223677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQK 607 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~~ 607 (748)
.++++.+=....- ..++.++..+++.|++ ...||+||-+|+.-
T Consensus 119 ~~~~~~vtk~~~~-v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 119 AAIAKPVSKMAVT-VREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HHHhhhhceEEEE-cCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 7888877654333 3467777777777664 34689999998853
No 210
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=90.35 E-value=6 Score=38.51 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=64.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhcc-CCCeEEEEecCCCccCCCC--CC
Q 004509 483 TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALC-EAGVIYVMTHDSIGLGEDG--PT 557 (748)
Q Consensus 483 ~~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~-~~pVi~v~t~~g~~~g~dG--~T 557 (748)
..|.+|+..|=-- .-++.|.|+++.-+ +|+++... .|..-. .-+...... ++|+++++...+. +|.-+ .+
T Consensus 33 ~~~~~~~~~gsmG-~~lp~AiGa~~a~~--~~Vv~i~GDG~f~m~~-~el~t~~~~~~~~i~~vV~nN~~-~g~~~~~~~ 107 (157)
T cd02001 33 DRDGHFYMLGSMG-LAGSIGLGLALGLS--RKVIVVDGDGSLLMNP-GVLLTAGEFTPLNLILVVLDNRA-YGSTGGQPT 107 (157)
T ss_pred cCCCCEEeecchh-hHHHHHHHHHhcCC--CcEEEEECchHHHhcc-cHHHHHHHhcCCCEEEEEEeCcc-ccccCCcCC
Confidence 4578887632211 11236677776543 67776644 454322 113333333 5898777744432 22222 22
Q ss_pred CCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 558 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 558 Hq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
++..-|.+-+..-=|+.-+...+..|+..+++.++. .++|++|-+
T Consensus 108 ~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 108 PSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred CCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 222233333333335666677899999999999996 689999865
No 211
>PRK08266 hypothetical protein; Provisional
Probab=90.30 E-value=1.3 Score=52.10 Aligned_cols=117 Identities=20% Similarity=0.197 Sum_probs=75.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCC-CCCCCCh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPI 561 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~d-G~THq~~ 561 (748)
=|++.+ ..|++++.+|-|+|.... +|-++ +..+=+..++.-|.+.-..+.||+++....... .+.+ +.+|+.+
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 120 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTG--RPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMP 120 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecc
Confidence 466665 899999999999997543 55443 566656666667776677899999987322221 2322 2345545
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 004509 562 EHLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 606 (748)
Q Consensus 562 edia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~irl~r~ 606 (748)
....+++.+-.. .....++.++..+++.|+ ....||+||-+|..
T Consensus 121 d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 121 DQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred cHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 777888877664 333444555555555444 33579999999874
No 212
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=90.26 E-value=10 Score=39.54 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=55.5
Q ss_pred ccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCCh-----------------------hhhH-H
Q 004509 513 IPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI-----------------------EHLA-S 566 (748)
Q Consensus 513 ~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~-----------------------edia-~ 566 (748)
+|+++. -..|.+..+..+......++||++++-..+. +|.-|..++.. -|.. +
T Consensus 81 r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~-yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i 159 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEA-YMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI 159 (235)
T ss_pred CeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcc-cccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence 688776 3445444555566667789999888866554 34222222111 1222 2
Q ss_pred Hhc--CCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 567 FRA--MPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 567 lr~--iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
.++ ++++..+...+..|+..+|+.+++ .++|++|-+
T Consensus 160 A~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 160 MAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 222 233334678999999999999997 689999865
No 213
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=90.08 E-value=4.6 Score=39.70 Aligned_cols=118 Identities=12% Similarity=-0.040 Sum_probs=67.1
Q ss_pred CCCCCccccccc--hHHHHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhccCCCeEEEEecCC-CccCC---C
Q 004509 483 TPEERNVRFGVR--EHGMGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGE---D 554 (748)
Q Consensus 483 ~~p~R~id~GIa--E~~~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~~~pVi~v~t~~g-~~~g~---d 554 (748)
..|.+++..|.- =...+++|.|.++... =+|+++... .|.. ....+...+..++|+++++...+ ++.-. .
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~-~~~vv~i~GDG~f~~-~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARP-DKRVVLVEGDGAFGF-SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCC-CCeEEEEEcchhhcC-CHHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 357888876431 2224456667766653 256766543 3432 12334445667999877776654 33211 0
Q ss_pred ----CCCCC----ChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 555 ----GPTHQ----PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 555 ----G~THq----~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
+..+. ...|.+-+..-=|+..+.-.+..|++.+++.+.. .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00000 1123332222225667777899999999999996 589998854
No 214
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.02 E-value=2 Score=50.85 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=77.7
Q ss_pred CccccccchHHHHHHHHHHHhc-CCCCccEEE-eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~-G~~~~Piv~-~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
|++.+ -.|++.+.+|.|+|.. |+ ..+|. ++.+-+..+..-|.++-..+.||+++....... .+. | .+|.++.
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~--~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 118 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGE--VGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGY-D-AFQECDM 118 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCC--ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccCC-C-CCceecH
Confidence 56664 7899999999999964 63 34443 466666666666666666799999997333222 232 2 3666777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQK 607 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~~ 607 (748)
..+++.+=... +...++.++..+++.|++. .+||+||.+|+.-
T Consensus 119 ~~l~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 119 VGISRPVVKHS-FLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HHHhhcccceE-EEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 78888766533 3345777777777777642 4699999998753
No 215
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=89.74 E-value=2.4 Score=50.31 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCccccccchHHHHHHHHHHHhc-CCCCccEE-EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~-G~~~~Piv-~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ -.|++++.+|.|+|.. |+ ..+| .++.+=+..+..-|.+.-..+.||+++....... .+. ..+|.+.
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d 118 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGR--MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQ--GGFQEAE 118 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCC--CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccCCC--CCCcccc
Confidence 466665 8999999999999975 53 3333 3455555555555665556799999997322221 122 2477777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQK 607 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r~~ 607 (748)
+..+++.+=.. .+...++.++...++.|++ ...+|+||-+|+.-
T Consensus 119 ~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 119 QMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 78888876553 3444566666655555552 24799999998753
No 216
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=89.73 E-value=2.2 Score=50.63 Aligned_cols=115 Identities=15% Similarity=0.063 Sum_probs=77.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
|++.+ -.|++++.+|-|+|.... +|-+. ++.+=+..+...|.++-+.+.||+++....... ......+|.+.+.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~-~~~~~~~q~~d~~ 115 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASG--KVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTK-LIGNDAFQEIDAL 115 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcc-ccCCCCCccccHh
Confidence 56665 799999999999997532 45443 466655556667777677899999987322221 1122346777777
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 565 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 565 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
++++.+=...... .++.++..+++.|++. .+||+||-+|+.
T Consensus 116 ~l~~~~tk~s~~v-~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 116 GIFMPITKHNFQI-KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred hHHhhhcceEEec-CCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 8888776654443 5566677677666642 368999999875
No 217
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.68 E-value=2 Score=50.49 Aligned_cols=116 Identities=11% Similarity=-0.008 Sum_probs=74.8
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++. .--|++++.+|.|+|.... +|.++ +..+=+..++..|.++-+.+.||+++........ ..-.++|.+..
T Consensus 40 i~~v~-~~hE~~A~~mAdgyar~tg--kpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~-~~~~~~q~~d~ 115 (549)
T PRK06457 40 VKYVQ-VRHEEGAALAASVEAKITG--KPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDM-IGHDYFQEVNL 115 (549)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhC--CCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccc-cCCCcccccch
Confidence 34444 4889999999999997553 56664 4565555566666666678999999863222211 11224677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r~ 606 (748)
..+++.+--. .+...++.++..+++.|++ ...||++|-+|..
T Consensus 116 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 116 TKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 8888876654 3444555565555555543 2469999999864
No 218
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.38 E-value=2.5 Score=50.30 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=76.2
Q ss_pred CCccccccchHHHHHHHHHHHh-cCCCCccEEE-eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIAL-HSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~-~G~~~~Piv~-~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ --|++++.+|-|+|. .|+ ..+|. ++.+=+..+..-|.+.-..+.||+++....... .+. .++|.+.
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~--~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 124 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGK--PGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECD 124 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCC--CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccc
Confidence 467776 899999999999995 563 23333 466655556666666666799999987322221 122 2467676
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQK 607 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~~ 607 (748)
..++++.+=-.. +...++.++..+++.|++. .+||+||-+|+.-
T Consensus 125 ~~~l~~~vtk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 125 TVGITRPCTKHN-WLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhhhhhheEEE-EEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 677777654432 3346677777777666642 3699999998753
No 219
>PRK08611 pyruvate oxidase; Provisional
Probab=89.33 E-value=2.4 Score=50.26 Aligned_cols=116 Identities=8% Similarity=-0.064 Sum_probs=75.8
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++. ...|++++.+|.|+|.... +|-++ ++.+=+..+...|.++-..+.||+++........-..| .+|.+..
T Consensus 44 i~~i~-~rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~-~~q~~d~ 119 (576)
T PRK08611 44 IKFIQ-VRHEEVAALAAAAYAKLTG--KIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTD-FFQEVNL 119 (576)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhC--CceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccCCC-CccccCH
Confidence 36665 4889999999999996443 45543 46665556666666666679999999733222211122 3666777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r~ 606 (748)
..+++.+--.. +...++.++..+++.|++ +..+|+||-+|..
T Consensus 120 ~~l~~~itk~~-~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 120 EKMFEDVAVYN-HQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred HHHhhccccee-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 88898776543 345566666665555442 2469999999875
No 220
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.27 E-value=2.6 Score=49.84 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=73.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
|++.+ --|++++.+|-|+|.... +|-+++ ..+=...+...|..+-..+.||+++....... .+. ..||.+.+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~ 117 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTG--ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHP 117 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhC--CcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccCh
Confidence 55554 689999999999998653 565543 44444455566666666799999986322222 232 24787788
Q ss_pred hHHHhcCCCcEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e----~~~~l~~a~~~~~~P~~irl~r~ 606 (748)
..+++.+-..... ..++.+ +..+++.|+. ..+|+||-+|+.
T Consensus 118 ~~l~~~itk~~~~-v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP~D 162 (574)
T PRK09124 118 QELFRECSHYCEL-VSNPEQLPRVLAIAMRKAIL-NRGVAVVVLPGD 162 (574)
T ss_pred hhhcccceeeeEE-eCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 8888866543332 445555 4455555564 569999999865
No 221
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=89.19 E-value=16 Score=36.29 Aligned_cols=118 Identities=9% Similarity=-0.038 Sum_probs=65.3
Q ss_pred CCCCCcccccc--chHHHHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhccCCCeEEEEec-CCCccCC----
Q 004509 483 TPEERNVRFGV--REHGMGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALCEAGVIYVMTH-DSIGLGE---- 553 (748)
Q Consensus 483 ~~p~R~id~GI--aE~~~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~~~pVi~v~t~-~g~~~g~---- 553 (748)
..|.||+..+- +=...+..|.|.++.-. =+|++.+-. .|.... .-+......++|+++++-. .+++.-.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~m~~-~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYP-DRKVVAVSGDGGFMMNS-QELETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhHH-HHHHHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 45788886532 11222335566554321 267776544 453221 2244445568898877544 4443200
Q ss_pred --CCC-CCC--ChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004509 554 --DGP-THQ--PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 604 (748)
Q Consensus 554 --dG~-THq--~~edia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~ 604 (748)
.+. .+. ..-|.+ +-+++ |+.-+.-.+..|++.+++.+++ .++|++|-+.
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 011 111 011333 33333 6777888999999999999996 6999998753
No 222
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=89.18 E-value=14 Score=36.57 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=67.5
Q ss_pred CCCCCcccccc-ch-HHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCC-CccC-----
Q 004509 483 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLG----- 552 (748)
Q Consensus 483 ~~p~R~id~GI-aE-~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g-~~~g----- 552 (748)
..|.+++..+. .= ...++.|.|.++... =++++.+ -..|+.-..+ +......++|+++++-..+ ++..
T Consensus 39 ~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~-~~~vv~i~GDG~f~~~~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~ 116 (178)
T cd02014 39 NGKQRFILSGLLATMGNGLPGAIAAKLAYP-DRQVIALSGDGGFAMLMGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQE 116 (178)
T ss_pred CCCCcEEcCCCCchhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhhHHH-HHHHHHhCCCcEEEEEECCchhHHHHHHH
Confidence 45778876543 11 113345556555432 1566655 4456543222 4445567899877776665 3310
Q ss_pred -CCCC-CC--CChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 553 -EDGP-TH--QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 553 -~dG~-TH--q~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
..++ .+ +..-|+.-+..--|+..+...+..|++..++.+++ .++|++|-+
T Consensus 117 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 117 VMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0011 11 11224443333337888889999999999999996 589999865
No 223
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=89.12 E-value=1.3 Score=52.29 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=78.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccE--EEeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPY--CATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Pi--v~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
|++.+ .-|++++.+|-|+|...+ +|- +.|+.+=+..++..|..+-..+.||+++........-..| .||.+...
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg--~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~-~~q~~d~~ 124 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASK--RPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTADRPPELRDCG-ANQAIDQL 124 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhC--CCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEECCCCHHHhcCC-CCceecHh
Confidence 56654 789999999999996553 554 3467776666777777767789999999733222211123 36788889
Q ss_pred HHHhcCCCcEEEeeCCHH-----HHHHHHHH---HHHcCCCcEEEEEcCC
Q 004509 565 ASFRAMPNILMLRPADGN-----ETAGAYKV---AVANRKRPSILALSRQ 606 (748)
Q Consensus 565 a~lr~iPnl~V~~Psd~~-----e~~~~l~~---a~~~~~~P~~irl~r~ 606 (748)
++++.+-...+-.|.+.. .+..+++. +.....+|+||-+|..
T Consensus 125 ~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 125 GLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 999987766666676621 13445555 3333579999999875
No 224
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=88.97 E-value=2.7 Score=49.66 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=75.8
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|+|.+ --|++++.+|.|+|.... +|-+ .++.+=+..+..-|..+-..+.||+++....... .+. ..+|.++
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 123 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTG--KLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGK--DAFQEAD 123 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCCC--CCccccC
Confidence 377776 899999999999997532 3433 3455555556666665556799999997432222 232 2466667
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
..++++.+=..... ..++.++..+++.|++. .++|+||-+|+.
T Consensus 124 ~~~~~~~itk~s~~-v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 124 IVGITMPITKYNYQ-IRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred hhchhcCCCceeEE-cCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 77788876665443 34666666666666643 369999999875
No 225
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.82 E-value=2.8 Score=49.80 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ --|++++.+|-|+|.... +|-+ .++.+=+..+..-|.++...+.||+++....... .+.+ .+|.+.
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d 134 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATG--KVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD--AFQECD 134 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--Cccccc
Confidence 467765 899999999999997643 4444 3466655666666776667899999997333222 2322 366666
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~----~~l~~a~~~~~~P~~irl~r~ 606 (748)
...+++.+=..... ..++.++. .+++.|.....||+||-+|+.
T Consensus 135 ~~~l~~~itk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 135 TVGITRPIVKHNFL-VKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHHhcCCcceeEE-eCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 67778776654332 33444444 445555433469999999885
No 226
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=88.66 E-value=3.3 Score=49.42 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=77.1
Q ss_pred CCccccccchHHHHHHHHHHHhc-CCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~-G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~e 562 (748)
=+++.+ -.|++++.+|.|+|.. | +|-+ .+..+=+..+..-|.+.-..+.||+++........ ..-..+|.+.
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg---~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~-~~~~~~q~~d 144 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATG---RVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGL-IGTDAFQEAD 144 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC---CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc-cCCCcCcccc
Confidence 366665 8999999999999965 5 4444 34566555566666666677999999974333221 1112367777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
...+++.+-.... ...++.++..+++.|++. ..||+||-+|+.
T Consensus 145 ~~~l~~~~tk~s~-~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 145 IVGITMPITKHNF-LVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred hhhhhhcceeEEE-EcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 7788887665433 345777777777666642 469999999875
No 227
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.43 E-value=3.9 Score=48.48 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=74.5
Q ss_pred CCccccccchHHHHHHHHHHHhc-CCCCccEE-EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~-G~~~~Piv-~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++.+ --|++++.+|.|+|.. |+ ..+| .+..+=+..+...|.++-..+.||+++....+.. ......||.+..
T Consensus 40 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~-~~~~~~~Q~~d~ 115 (579)
T TIGR03457 40 IRFIPV-VHEQGAGHMADGFARVTGR--MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTK-TIGLGGFQEADQ 115 (579)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCC--CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccc-cCCCCCCcccch
Confidence 356665 7899999999999964 53 2333 3466655556666666667799999997322221 111234777777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQK 607 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r~~ 607 (748)
..+++.+=... +...++.++..+++.|++ ...||+||-+|+.-
T Consensus 116 ~~l~~~vtk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 116 LPMFQEFTKYQ-GHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhhhhcceeEE-EecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 78888766533 333455666555554442 23589999999754
No 228
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.39 E-value=10 Score=41.00 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhc----CCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCC-----------
Q 004509 496 HGMGAICNGIALH----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH----------- 558 (748)
Q Consensus 496 ~~~vg~AaGlA~~----G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~TH----------- 558 (748)
.+..++|.|++.. |.+-+.++.. -.+|.+-.++.+-..++.++||++++-+-.+.....|..|
T Consensus 72 G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 72 AATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred hChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 3344566666543 1111445533 3345554455566667899999999866544322112111
Q ss_pred ---------CChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 004509 559 ---------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 605 (748)
Q Consensus 559 ---------q~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~r 605 (748)
-.+..++.-..+|-+....|+++.++...++.|++ .+||.+|....
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~~s 206 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHLLA 206 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 12344444456777888999999999999999996 69999998643
No 229
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=88.11 E-value=2.2 Score=48.63 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=76.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
+++.+ .-|++++-+|-|+|.... +|-++ ++.+=...+...|...-..+.||+++....... .+. | .+|.+.+
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 114 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASG--RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGC-G-ANQTIDQ 114 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccC--CCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCC-C-CCcccch
Confidence 55554 889999999999998642 45443 566655556666666667899999986322221 132 2 3666777
Q ss_pred hHHHhcCCCcEEE--eeCC-------HHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 004509 564 LASFRAMPNILML--RPAD-------GNETAGAYKVAVANRKRPSILALSRQK 607 (748)
Q Consensus 564 ia~lr~iPnl~V~--~Psd-------~~e~~~~l~~a~~~~~~P~~irl~r~~ 607 (748)
..+++.+=....- .|.+ +..+..+++.|+...+||+||-+|..-
T Consensus 115 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 115 PGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 8888877654433 3443 245666676666545799999998653
No 230
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.01 E-value=11 Score=40.54 Aligned_cols=105 Identities=12% Similarity=0.023 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCCCccEEEeehh--HHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCC--------------
Q 004509 496 HGMGAICNGIALHSPGLIPYCATFFV--FTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ-------------- 559 (748)
Q Consensus 496 ~~~vg~AaGlA~~G~~~~Piv~~f~~--F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq-------------- 559 (748)
...+.+|.|+++... =++++..-.+ +.+.....+-..+..++|+++++-..+. +|.-|.+-+
T Consensus 62 G~alp~A~GaklA~P-d~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~-ygmtggQ~s~~t~~g~~t~~t~~ 139 (279)
T PRK11866 62 GRVLPIATGVKWANP-KLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQV-YGLTTGQASPTTPRGVKTKTTPD 139 (279)
T ss_pred ccHHHHHHHHHHHCC-CCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChh-hhhhcccccCCCCCCceeeccCC
Confidence 444567778766543 3667765443 3343444455567789998888765543 333221110
Q ss_pred -------ChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 560 -------PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 560 -------~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
....++.--.++.+....+.++.|++.+++.|++ .++|++|-.
T Consensus 140 g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 140 GNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1112333334455556677999999999999997 699999976
No 231
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.01 E-value=3.6 Score=48.57 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=78.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
+++.+ -.|++.+.+|.|+|.... +|-+ .++.+=+..+..-|.++-..+.||+++....... .+. ..+|.+.+
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 117 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASG--KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT--DAFQEIDA 117 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 66665 899999999999996442 4444 3466655556666666667799999987322221 122 24677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
.++++.+=.. .+...++.++..+++.|++. ..||+||-+|..
T Consensus 118 ~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 118 VGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7888877653 34557888888888877753 458999999864
No 232
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.98 E-value=3.6 Score=48.68 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=75.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi 564 (748)
|++.+ --|++.+.+|-|+|...+ +|-++ +..+=+..++.-|.++-..+.||+++....... ...-..+|.+...
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~-~~~~~~~q~~d~~ 119 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTG--KVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSN-LIGTDAFQECDML 119 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcc-ccCCCcccccchh
Confidence 66665 899999999999997542 45443 455555556666666667899999987322222 1112246777777
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 565 ASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 565 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
.+++.+=.. .....++.++..+++.|++ ...||+||-+|+.
T Consensus 120 ~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 120 GISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 888866543 3344566666666666654 2469999999875
No 233
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=87.98 E-value=2.3 Score=50.10 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=74.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCcc-CCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~-g~dG~THq~~ed 563 (748)
|++.+ --|++++.+|.|+|.... +|-++ +..+=+..+..-|.++-..+.||+++........ +..-..||.+..
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 118 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQ 118 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhC--CCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhH
Confidence 66665 889999999999996532 44443 4555555566666666667999999873322211 111224677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a----~~~~~~P~~irl~r~ 606 (748)
.++++.+=.. .+...++.++..+++.| +...+||+||-+|+.
T Consensus 119 ~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 119 LAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 8888876654 33444566655555544 433578999999864
No 234
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=87.82 E-value=9.8 Score=37.60 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCCCcc-ccccch-HHHHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhccCCCeEEEEecCCC-ccCCCCCC-
Q 004509 484 PEERNV-RFGVRE-HGMGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPT- 557 (748)
Q Consensus 484 ~p~R~i-d~GIaE-~~~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~~~pVi~v~t~~g~-~~g~dG~T- 557 (748)
.|.|++ +.|..- ..-++.|.|.++.-. +|+++... .|..-+ .-+......++|+++++-..+. +.-.....
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~--~~Vv~i~GDGsf~m~~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATD--KPTVLLTGDLSFLHDL-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCC--CCEEEEEehHHHHHhH-HHHHhccccCCCeEEEEEECCCCchheeccCC
Confidence 467887 444321 123355666555432 67776544 454322 2233344568998776655543 21000000
Q ss_pred --------C----CChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 558 --------H----QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 558 --------H----q~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
. +...-.++.+++ |+.-+.-.++.|++.+|+.+++ .++|++|-+
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 011112233332 5666777899999999999996 689998854
No 235
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.81 E-value=2.4 Score=50.20 Aligned_cols=116 Identities=8% Similarity=-0.065 Sum_probs=75.0
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~ed 563 (748)
=|++.+ --|++.+.+|-|+|...+ +|-++ ++.+=+..+...|.++-..+.||+++...... ...+-.++|.+..
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~-~~~~~~~~q~id~ 114 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTG--KIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPT-TGMNMDTFQEMNE 114 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhC--CceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcc-ccCCCCCcceech
Confidence 456655 789999999999996443 45443 45665555666666666679999999733222 2223445777777
Q ss_pred hHHHhcCCCcEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCCC
Q 004509 564 LASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQK 607 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e----~~~~l~~a~~~~~~P~~irl~r~~ 607 (748)
.++++.+=... ....++.+ +..+++.|+. ..+|+||-+|+.-
T Consensus 115 ~~~~~~vtk~~-~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 160 (575)
T TIGR02720 115 NPIYADVAVYN-RTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDF 160 (575)
T ss_pred hhhhhhcceEE-EEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcch
Confidence 78888665432 23333444 4555666665 6799999999763
No 236
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=87.77 E-value=4.9 Score=44.66 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=67.3
Q ss_pred cccchhhH-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEE-cchhcchhhHHHHH-HHHHHcC--------CCcEE
Q 004509 196 VTTGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVIL-GDGCQMEGIANEAS-SLAGHLG--------LGKLI 264 (748)
Q Consensus 196 ~~tG~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~ii-GDG~~~eG~~~Eal-~~A~~~~--------L~~li 264 (748)
+.+|..=+ .++.|.|+|++- .+.++++. .|-.. -.||-+ +.++.++ + |++
T Consensus 77 ~d~GIAEq~~vg~AaGlA~~G---------------~~P~v~~~~~~f~~---ra~dQi~~dva~~~~~~~g~~~~-pV~ 137 (356)
T PLN02683 77 LDTPITEAGFTGIGVGAAYAG---------------LKPVVEFMTFNFSM---QAIDHIINSAAKTNYMSAGQISV-PIV 137 (356)
T ss_pred EECchhHHHHHHHHHHHHHCC---------------CEEEEEEehhhHHH---HHHHHHHHHHHHhccccCCCccC-CEE
Confidence 33444333 456777888742 23344443 33222 456654 5556555 7 788
Q ss_pred EEEECCCCcccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004509 265 AFYDDNHISIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 265 ~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
++..+....-.+.+. .......+++. |+.++.+ .|..++..+++.+.+ .++|++|..
T Consensus 138 i~~~~G~~~g~G~tH---~~~~~a~lr~iPnl~V~~P----ad~~e~~~~l~~a~~-~~gPv~ir~ 195 (356)
T PLN02683 138 FRGPNGAAAGVGAQH---SQCFAAWYSSVPGLKVLAP----YSSEDARGLLKAAIR-DPDPVVFLE 195 (356)
T ss_pred EEEeCCCCCCCCCcc---ccCHHHHHhcCCCCEEEEe----CCHHHHHHHHHHHHh-CCCcEEEEE
Confidence 888774322233333 12225788887 9999999 599999999999987 678999964
No 237
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=87.70 E-value=15 Score=39.53 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCccccccccccccccCCCCCccccccch---HHHHHHHHHHHhcCCCCccEE
Q 004509 440 TRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVRE---HGMGAICNGIALHSPGLIPYC 516 (748)
Q Consensus 440 ~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~k~~~~f~~~~~p~R~id~GIaE---~~~vg~AaGlA~~G~~~~Piv 516 (748)
...++.++|.++.-...+.++. .|+|-+.. .| ++++..--- ...+.+|.|+++... =+|++
T Consensus 12 i~~~~~~a~~~l~~~p~d~iiv-sdiGc~~~-------------~~-~~l~~~~~~t~mG~alPaAiGaklA~P-d~~VV 75 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVV-SGIGCSAK-------------TP-HYVNVNGFHGLHGRALPVATGIKLANP-HLKVI 75 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCCcccc-------------cC-CeEecCCcccccccHHHHHHHHHHHCC-CCcEE
Confidence 3455666666654333344443 46654321 23 444432110 234457777666543 26777
Q ss_pred Eee--hhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCC--------------C----hhhhHHHh---cCCCc
Q 004509 517 ATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ--------------P----IEHLASFR---AMPNI 573 (748)
Q Consensus 517 ~~f--~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq--------------~----~edia~lr---~iPnl 573 (748)
..- ..|......-+-..+..++||++++-..+. +|.-|.+.. + ..|+.++. ...-.
T Consensus 76 ai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~-yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~v 154 (287)
T TIGR02177 76 VVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQV-YGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFV 154 (287)
T ss_pred EEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHH-HHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeE
Confidence 653 344332222333345678998888755443 322220000 0 01222222 22222
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004509 574 LMLRPADGNETAGAYKVAVANRKRPSILALS 604 (748)
Q Consensus 574 ~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~ 604 (748)
-.....+..|+..+++.|++ +++|++|-..
T Consensus 155 a~~~~~~~~eL~~ai~~Al~-~~GpslIeV~ 184 (287)
T TIGR02177 155 ARGFSGDVAHLKEIIKEAIN-HKGYALVDIL 184 (287)
T ss_pred EEEecCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 22335899999999999996 6999998763
No 238
>PLN02470 acetolactate synthase
Probab=87.60 E-value=3.7 Score=48.73 Aligned_cols=115 Identities=16% Similarity=0.069 Sum_probs=76.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ --|++.+.+|.|+|..-. +|-+ .++.+=+..+..-|.++-..+.||+++....... .+. ..+|.+.
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d 126 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASG--KVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGT--DAFQETP 126 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCC--CcCcccc
Confidence 466766 889999999999996532 4444 3566666666666666666799999997322221 122 2356666
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~ 606 (748)
...+++.+=.... ...++.++..+++.|++. .+||+||-+|..
T Consensus 127 ~~~l~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 127 IVEVTRSITKHNY-LVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhhheEEEE-EcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 7778876654333 345777777777777642 469999999875
No 239
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.38 E-value=3.6 Score=48.54 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=74.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=+++.+ ..|++.+.+|-|+|.... +|-++ ++.+=+..+..-|.++-..+.||+++....... .+. + .+|.+.
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg--~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d 120 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATG--KVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGN-D-AFQEAD 120 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Cccccc
Confidence 466666 899999999999996532 45543 456655556666776667899999987332222 122 2 345566
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
..++++.+=.... .-.++.++..+++.|++ ..+||+||-+|+.
T Consensus 121 ~~~~~~~itk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 121 ITGITMPITKHNY-LVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhhccCcceEEE-EeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 6677776554332 33566777766666664 2469999999875
No 240
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=87.21 E-value=3.8 Score=48.46 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=77.2
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ --|++++.+|.|+|..-. +|-+ .+..+-+..+..-|.++-..+.||+++....... .+..-.++|.+.
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d 124 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELD 124 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccc
Confidence 366665 889999999999997642 3444 2466766667777777777899999987322211 111112467777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
...+++.+=.... ...++.++...++.|++ ..+||+||-+|+.
T Consensus 125 ~~~~~~~~tk~s~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 125 QLNAAKPFCKAAF-RVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhhheeeeE-EcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 7788887665433 33566766665555553 3578999999865
No 241
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.97 E-value=4.4 Score=47.97 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=76.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ --|++++.+|-|+|.... +|-+ .++.+=+..+..-|.++-..+.||+++....... .+. ..+|.+.
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d 127 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASG--KVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGK--DGFQEAD 127 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccccC--CCCcccc
Confidence 466665 789999999999996432 3433 3466655555556665556799999987332222 122 2366667
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQK 607 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~~~P~~irl~r~~ 607 (748)
...+++.+=.... ...++.++..+++.|++. .+||+||-+|+.-
T Consensus 128 ~~~l~~~itk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 128 VVGITVPVTKHNY-QVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhhccceeEE-EcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 7778887665433 345777777777777642 4799999998753
No 242
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=86.68 E-value=10 Score=37.08 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=61.2
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHH-HcCCCcEEEEEECCCC-ccccc
Q 004509 200 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG-HLGLGKLIAFYDDNHI-SIDGD 277 (748)
Q Consensus 200 ~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~-~~~L~~li~Ivd~N~~-~i~~~ 277 (748)
.=+++.+.|.|.+++. ...++|+.+=|- |...-++..|. ..+. |+++|+-..+. .-..+
T Consensus 42 ~ee~aa~~aAg~~~~~---------------~~~~v~~~~sG~---gn~~~~l~~a~~~~~~-Pvl~i~g~rg~~~~~~~ 102 (157)
T TIGR03845 42 REEEGVGICAGAYLAG---------------KKPAILMQSSGL---GNSINALASLNKTYGI-PLPILASWRGVYKEKIP 102 (157)
T ss_pred ChHHHHHHHHHHHHhc---------------CCcEEEEeCCcH---HHHHHHHHHHHHcCCC-CEEEEEeccCCCCCCCc
Confidence 3456667777777442 345788877772 35777888888 8887 67777633322 11111
Q ss_pred ccccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEE
Q 004509 278 TEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVT 330 (748)
Q Consensus 278 ~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~ 330 (748)
.+.....-....+..+++.+..+. +++++ .++++|.+ ..++|++|.+.
T Consensus 103 ~q~~~g~~~~~~l~~~~i~~~~i~----~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 103 AQIPMGRATPKLLDTLGIPYTIPR----EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred cccchhhhhHHHHHHcCCCeEEeC----CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 111111112335566777788882 55555 55555433 25699998764
No 243
>PRK05899 transketolase; Reviewed
Probab=86.59 E-value=6.3 Score=47.19 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=62.4
Q ss_pred EcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcc--cccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHH
Q 004509 238 LGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAI 314 (748)
Q Consensus 238 iGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al 314 (748)
..-..|. ...++++.+.+..++ |++++....+++. ++++. ...+|+. .+++. |+.++.+ .|..++..++
T Consensus 397 ~t~~~F~-~r~~~qir~~~~~~~-pv~~v~~~~G~~~g~~G~tH-q~~edia-~~r~iP~~~V~~P----~d~~e~~~~l 468 (624)
T PRK05899 397 GTFLVFS-DYARNAIRLAALMKL-PVIYVFTHDSIGVGEDGPTH-QPVEQLA-SLRAIPNLTVIRP----ADANETAAAW 468 (624)
T ss_pred EEcHHHH-HHHHHHHHHHHhcCC-CEEEEEECCCcCcCCCCCCc-ccHHHHH-HHHhCCCcEEEeC----CCHHHHHHHH
Confidence 3445665 678999999888887 7888888777654 55555 3334443 56665 9999999 5999999999
Q ss_pred HHHHhcCCCCEEEEE
Q 004509 315 KEAKAVTDKPTLIRV 329 (748)
Q Consensus 315 ~~a~~~~~~P~vI~~ 329 (748)
+.+.+..++|++|..
T Consensus 469 ~~a~~~~~~P~~ir~ 483 (624)
T PRK05899 469 KYALERKDGPSALVL 483 (624)
T ss_pred HHHHHcCCCCEEEEE
Confidence 999873379999976
No 244
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=86.49 E-value=4.4 Score=48.07 Aligned_cols=115 Identities=11% Similarity=-0.002 Sum_probs=73.1
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ --|++++.+|-|+|...+ +|-++ +..+=+..+..-|.++-..+.||+++....... .+ .| .+|.+.
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tg--k~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~-~~-~~Qe~d 116 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTG--KLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIG-SG-FFQETH 116 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhC--CceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccC-CC-CccccC
Confidence 356665 789999999999998643 55554 244445555556666666799999997322221 12 23 366677
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~r~ 606 (748)
+..+++.+=.. .+...++.++..+++.|++ ...||+||-+|..
T Consensus 117 ~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 117 PDRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 77788765442 3455566666655554442 2579999999874
No 245
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.38 E-value=3.1 Score=49.20 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=75.2
Q ss_pred CCccccccchHHHHHHHHHHHhc-CCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCCh
Q 004509 486 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 561 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~-G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ 561 (748)
=|+|.+ --|++++.+|.|+|.. | +|-|+ ++.+=+..+..-|..+-..+.||+++....... .+. | .+|.+
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg---~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~ 116 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATG---KVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGN-D-AFQEC 116 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhC---CCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccCC-C-CCccc
Confidence 366665 8999999999999975 5 34443 455555555556665556799999987333222 122 2 36667
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 562 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 562 edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
...++++.+=.... ...++.++..+++.|++ ...+|+||-+|+.
T Consensus 117 d~~~~~~~itk~~~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 117 DMIGISRPVVKHSF-LVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred chhHHhhhceeEEE-ecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 77788887655433 33467777766766664 2469999999875
No 246
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.28 E-value=8.9 Score=41.51 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhc----CCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCC-----------
Q 004509 496 HGMGAICNGIALH----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH----------- 558 (748)
Q Consensus 496 ~~~vg~AaGlA~~----G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~TH----------- 558 (748)
.+.+++|.|++.. +. -++++.. -..|.+-.+..+-...+.+.++++++-+.+. ++.-|.+-
T Consensus 72 g~~~a~a~Gi~~a~~~~~~-~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~Tp~Ga~t~ 149 (299)
T PRK11865 72 ENAAAVASGIERAVKALGK-KVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGSTPFGASTT 149 (299)
T ss_pred cchHHHHHHHHHHHHHhcC-CCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCCCCCCcccc
Confidence 4556777777654 42 1345544 3467666666666667788899888765544 32222111
Q ss_pred ---------------CChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004509 559 ---------------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 604 (748)
Q Consensus 559 ---------------q~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl~ 604 (748)
-.+..++.-..+|-+....|.++.|+...++.|++ .+||++|...
T Consensus 150 tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v~ 209 (299)
T PRK11865 150 TSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQVL 209 (299)
T ss_pred cCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 12344444467777888899999999999999996 6999999763
No 247
>PRK12474 hypothetical protein; Provisional
Probab=86.17 E-value=5.3 Score=46.62 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=74.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
|++.+ --|++.+.+|-|+|.... +|-+ .++.+=+..+...|.++-..+.||+++....... .+. ..||....
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg--~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 119 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAG--KPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDI 119 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhC--CCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCH
Confidence 67765 889999999999996532 4544 3455555545555555555789999987322211 121 23555666
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQK 607 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~~ 607 (748)
.++++.+-.. .+...++.++..+++.|++ ...+|+||-+|+.-
T Consensus 120 ~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 120 DGFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred HHhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 6788865543 3356777877777777763 24689999999753
No 248
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=86.16 E-value=3.1 Score=49.23 Aligned_cols=116 Identities=19% Similarity=0.116 Sum_probs=74.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEE--EeehhHHHHHHHHHHHhhccCCCeEEEEecCCCcc-CCCC------CC
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDG------PT 557 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv--~~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~-g~dG------~T 557 (748)
|+|.+ --|++++.+|-|+|.... +|-+ .+..+=+..+..-|...-..+.||+++........ +.++ ..
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~ 128 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTG--KPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHW 128 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhC--CCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCccc
Confidence 67766 779999999999998653 4443 35666666666666666677999999873322211 1110 12
Q ss_pred CCC-hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 558 HQP-IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 558 Hq~-~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
+|. +....+++.+=. -.+...++.++..+++.|++ ..++|+||-+|..
T Consensus 129 ~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 129 TQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred chhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 344 466677876554 23355566777666666654 2478999999854
No 249
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=86.08 E-value=8.3 Score=37.92 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=55.6
Q ss_pred cEEEEEE--cchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCC-HH
Q 004509 232 HYTYVIL--GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTG-YD 308 (748)
Q Consensus 232 ~~v~~ii--GDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D-~~ 308 (748)
+..+|+. |=|.++ ..-++..|...+. |+++|.-+-.....+........|....++.+.-...++.+-. + .+
T Consensus 64 ~~~v~~~~~GpG~~n---~~~~l~~A~~~~~-Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~-~~~~ 138 (172)
T PF02776_consen 64 RPGVVIVTSGPGATN---ALTGLANAYADRI-PVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPD-DLPE 138 (172)
T ss_dssp SEEEEEEETTHHHHT---THHHHHHHHHTT--EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGG-GHHH
T ss_pred cceEEEeecccchHH---HHHHHhhccccee-eEEEEecccchhhhcccccccchhhcchhccccchhcccCCHH-HHHH
Confidence 3344443 445554 5556777888887 6777766554433331112223467788998875566773333 3 34
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEe
Q 004509 309 DIRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 309 ~l~~al~~a~~~~~~P~vI~~~T 331 (748)
.+.+|++.+.....+|+.|++..
T Consensus 139 ~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 139 ALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp HHHHHHHHHHHCSTSEEEEEEEH
T ss_pred HHHHHHHHhccCCCccEEEEcCh
Confidence 56666666633367899998764
No 250
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=85.71 E-value=6.1 Score=47.21 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=75.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=||+.+ --|+.++.+|.|+|.... +|-|+ +..+=+..++.-|.+.-+.+.||+++....... .+. ..+|.+.
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tg--k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~Qe~d 135 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATG--KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGT--DAFQETD 135 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC--CCccccc
Confidence 467776 899999999999996542 45443 456655566666776667899999987332222 122 2356566
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 563 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
...+++.+-.. .....++.++..+++.|++ ...||+||-+|+.
T Consensus 136 ~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 136 IFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 66777755432 2335666677666666654 3469999999874
No 251
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=85.67 E-value=3.1 Score=49.38 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=72.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChhh
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 563 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~ed 563 (748)
|++.+ .-|++++.+|.|+|..-. +|-++ ++.+=+..+..-|.++-..+.||+++....... .+.+ .+|.++.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~ 127 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTG--KVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDI 127 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--Cccccch
Confidence 56664 799999999999996532 45443 456655556666666667799999987322211 2222 2555555
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 564 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 564 ia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
..+++.+=.. .....++.++..+++.|++ ..+||+||-+|+.
T Consensus 128 ~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 128 FGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 5666654332 3334566666666666653 2468999999875
No 252
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=85.53 E-value=8.9 Score=45.86 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=71.3
Q ss_pred cccchhhH-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHH-HHHHHcCCCcEEEEEECCCCc
Q 004509 196 VTTGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SLAGHLGLGKLIAFYDDNHIS 273 (748)
Q Consensus 196 ~~tG~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal-~~A~~~~L~~li~Ivd~N~~~ 273 (748)
+.+|..=+ .++.|.|+|+. ..+.||.+ -+.|.. -.++-+ +.++..++ |++++.+..++.
T Consensus 355 ~d~GIaEq~~vg~AaGlA~~----------------G~~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~l-pV~i~~~~~G~~ 415 (617)
T TIGR00204 355 FDVAIAEQHAVTFAAGMAIE----------------GYKPFVAI-YSTFLQ-RAYDQVVHDVCIQKL-PVLFAIDRAGIV 415 (617)
T ss_pred ccCCccHHHHHHHHHHHHHC----------------CCEEEEEe-cHHHHH-HHHHHHHHHHHhcCC-CEEEEEECCCcC
Confidence 33444333 34667777763 23444444 556664 677766 56788888 788998877764
Q ss_pred -ccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004509 274 -IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 274 -i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~ 330 (748)
-++++. ...+|+ ..+++. |+.++.+ .|..++..+++.|.+..++|++|...
T Consensus 416 g~dG~tH-~~~~di-a~lr~iPgl~V~~P----sd~~e~~~~l~~a~~~~~~Pv~ir~~ 468 (617)
T TIGR00204 416 GADGETH-QGAFDI-SYLRCIPNMVIMAP----SDENELRQMLYTGYHYDDGPIAVRYP 468 (617)
T ss_pred CCCCccc-ccchHH-HHHhcCCCcEEEee----CCHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 223332 223454 467775 9999999 59999999999998733489998544
No 253
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=85.50 E-value=6.9 Score=47.09 Aligned_cols=84 Identities=24% Similarity=0.219 Sum_probs=61.0
Q ss_pred cchhcchhhHHHHHHHHHHcCCCcEEEEEECCCC--cccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHH
Q 004509 239 GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIK 315 (748)
Q Consensus 239 GDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~ 315 (748)
.-..|.. ..++++..++..++ |+++|.-..++ +-+|++. ...++++ .+++. |+.++.+ .|..++..+++
T Consensus 427 tf~~F~~-r~~~~ir~~a~~~l-pV~~v~th~g~~~G~dG~TH-q~iedia-~lr~iPn~~v~~P----aD~~E~~~~~~ 498 (653)
T TIGR00232 427 TFLMFVD-YARPAIRLAALMKL-PVIYVYTHDSIGVGEDGPTH-QPIEQLA-SLRAIPNLSVWRP----CDGNETAAAWK 498 (653)
T ss_pred EhHHHHH-HHHHHHHHHHhcCC-CEEEEEeCCccCCCCCCccc-CCHHHHH-HHhcCCCCEEEee----CCHHHHHHHHH
Confidence 3446654 77889999999998 78888855444 4455554 3344544 56776 9999999 58999999999
Q ss_pred HHHhcCCCCEEEEEE
Q 004509 316 EAKAVTDKPTLIRVT 330 (748)
Q Consensus 316 ~a~~~~~~P~vI~~~ 330 (748)
.+.+..++|++|...
T Consensus 499 ~a~~~~~gP~~irl~ 513 (653)
T TIGR00232 499 YALESQDGPTALILS 513 (653)
T ss_pred HHHhcCCCcEEEEEc
Confidence 998436799988543
No 254
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=84.72 E-value=10 Score=45.64 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=71.9
Q ss_pred cccchhhHh-HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHH-HHHHHcCCCcEEEEEECCCCc
Q 004509 196 VTTGPLGQG-MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SLAGHLGLGKLIAFYDDNHIS 273 (748)
Q Consensus 196 ~~tG~lG~g-l~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal-~~A~~~~L~~li~Ivd~N~~~ 273 (748)
+.+|.-=++ ++.|.|+|+.- -+.++++. ..|.. ..++.+ +.++..++ |++++++.-++.
T Consensus 364 id~GIaE~~mvg~AaGlA~~G---------------~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~l-pv~~v~~~~G~~ 424 (641)
T PRK12571 364 FDVGIAEQHAVTFAAGLAAAG---------------LKPFCAVY--STFLQ-RGYDQLLHDVALQNL-PVRFVLDRAGLV 424 (641)
T ss_pred cccCccHHHHHHHHHHHHHCC---------------CEEEEEeh--HHHHH-HHHHHHHHHHhhcCC-CeEEEEECCCcC
Confidence 444444443 46677777621 23445554 44554 678887 55888998 788888777653
Q ss_pred -ccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004509 274 -IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 274 -i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~ 330 (748)
.+|++.. ..+|+ ..+++. |+.++.+ .|..++..+++.|.+..++|++|...
T Consensus 425 g~dG~THq-~~~di-a~lr~iPnl~V~~P----sd~~e~~~~l~~a~~~~~~P~~ir~~ 477 (641)
T PRK12571 425 GADGATHA-GAFDL-AFLTNLPNMTVMAP----RDEAELRHMLRTAAAHDDGPIAVRFP 477 (641)
T ss_pred CCCCcccc-ccHHH-HHHhcCCCCEEEee----CCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3333321 22343 467776 9999999 59999999999998733789999544
No 255
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=84.67 E-value=16 Score=34.94 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=48.6
Q ss_pred EEEEE-cchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHHHH
Q 004509 234 TYVIL-GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRA 312 (748)
Q Consensus 234 v~~ii-GDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~ 312 (748)
+++.. |=|.++ ..+++..|...++ |+++|.-+....-.+... ....|....++.+--...++ ++.+++.+
T Consensus 62 v~~~~~gpG~~n---~~~~l~~A~~~~~-Pll~i~~~~~~~~~~~~~-~q~~d~~~~~~~~~~~~~~i----~~~~~~~~ 132 (155)
T cd07035 62 VVLVTSGPGLTN---AVTGLANAYLDSI-PLLVITGQRPTAGEGRGA-FQEIDQVALFRPITKWAYRV----TSPEEIPE 132 (155)
T ss_pred EEEEcCCCcHHH---HHHHHHHHHhhCC-CEEEEeCCCccccccCCc-ccccCHHHHHHHHhceEEEc----CCHHHHHH
Confidence 44444 555554 6788999999998 677765444322211111 11234455555553336666 26666666
Q ss_pred HHHHHHh---cC-CCCEEEEE
Q 004509 313 AIKEAKA---VT-DKPTLIRV 329 (748)
Q Consensus 313 al~~a~~---~~-~~P~vI~~ 329 (748)
.+.+|.+ .. .+|+.|++
T Consensus 133 ~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 133 ALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHHhcCCCCCcEEEEe
Confidence 5555544 13 67999876
No 256
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=84.45 E-value=9.5 Score=37.28 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCCCcEEEEEEC--CCCcccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCC
Q 004509 247 IANEASSLAGHLGLGKLIAFYDD--NHISIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 323 (748)
Q Consensus 247 ~~~Eal~~A~~~~L~~li~Ivd~--N~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~ 323 (748)
..++.+.+...++ ++.+++..+ ..++.++++.. ..+...+++.+ |+.++.+ .|..++...++.+.+..++
T Consensus 86 ~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH~--~~~~~~~~~~iP~~~v~~P----~~~~e~~~~l~~a~~~~~~ 158 (168)
T smart00861 86 RAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTHH--SQEDEALLRAIPGLKVVAP----SDPAEAKGLLRAAIRRDDG 158 (168)
T ss_pred HHHHHHHHhCccc-CCCEEEEecCccccCCCCcccc--chhHHHHHhcCCCcEEEec----CCHHHHHHHHHHHHhCCCC
Confidence 5788888888887 334444443 33344444432 22344466665 8999988 5999999999999863468
Q ss_pred CEEEEE
Q 004509 324 PTLIRV 329 (748)
Q Consensus 324 P~vI~~ 329 (748)
|++|..
T Consensus 159 p~~i~~ 164 (168)
T smart00861 159 PPVIRL 164 (168)
T ss_pred CEEEEe
Confidence 987754
No 257
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=84.44 E-value=6.9 Score=45.03 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEE-cchhcchhhHHHHH-HHHH--------HcCCCcEEEEEECCCCc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVIL-GDGCQMEGIANEAS-SLAG--------HLGLGKLIAFYDDNHIS 273 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~ii-GDG~~~eG~~~Eal-~~A~--------~~~L~~li~Ivd~N~~~ 273 (748)
.++.|.|+|++- -+.++++. .+-.+ ..++-+ +.++ .+++ |++|+..+.+.+
T Consensus 201 ~vg~AaGlA~~G---------------~rPiv~~~~~~f~~---ra~dQI~n~~ak~~~~sgg~~~~-pVv~~g~~G~~~ 261 (464)
T PRK11892 201 FAGIGVGAAFAG---------------LKPIVEFMTFNFAM---QAIDQIINSAAKTLYMSGGQMGC-PIVFRGPNGAAA 261 (464)
T ss_pred HHHHHHHHHhCC---------------CEEEEEEehHHHHH---HHHHHHHHHHhHHhhhcCCccCC-CEEEEecCCCCC
Confidence 346777888742 23444443 33332 344444 5556 8888 788887776654
Q ss_pred ccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004509 274 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 328 (748)
Q Consensus 274 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~ 328 (748)
-.+. ....+...+++.. |+.++.. .|..+....++.+.+ .++|++|.
T Consensus 262 ~~G~---hhs~~d~a~~~~iPgl~V~~P----~d~~d~~~ll~~ai~-~~~Pv~il 309 (464)
T PRK11892 262 RVAA---QHSQDYAAWYSHIPGLKVVAP----YSAADAKGLLKAAIR-DPNPVIFL 309 (464)
T ss_pred CCCC---ccccCHHHHHhhCCCCEEEEe----CCHHHHHHHHHHHhh-CCCcEEEE
Confidence 4333 2333445788887 9999999 589999999999987 67899874
No 258
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=83.61 E-value=7.4 Score=46.81 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred cccchhhH-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHH-HHHHcCCCcEEEEEECCCCc
Q 004509 196 VTTGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASS-LAGHLGLGKLIAFYDDNHIS 273 (748)
Q Consensus 196 ~~tG~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~-~A~~~~L~~li~Ivd~N~~~ 273 (748)
+-+|..=| .+..|.|+|+.- -+.++++.. .|.. -.|+-+. .++..++ |+.++++.-++.
T Consensus 426 fDvGIAEQhaVt~AAGLA~~G---------------~kPvv~iys--tFlq-RAyDQI~~Dval~~l-pV~~vid~aGlv 486 (701)
T PLN02225 426 FNVGMAEQHAVTFSAGLSSGG---------------LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRK-AVRFVITSAGLV 486 (701)
T ss_pred cccCccHHHHHHHHHHHHHCC---------------CEEEEEeeh--hHHH-HHHHHHHHHHHhhcC-CceEEEECCccC
Confidence 33444333 456677777532 245667774 5654 5666554 4678888 788888876653
Q ss_pred c-cccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004509 274 I-DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 274 i-~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~ 330 (748)
- ++++. ....|+ .+++.. |+.++.+ .|..++..+++.|....++|++|...
T Consensus 487 g~DG~TH-~g~~Di-a~lr~IPnm~V~aP----sD~~El~~mL~~A~~~~~gPv~IR~p 539 (701)
T PLN02225 487 GSDGPVQ-CGAFDI-AFMSSLPNMIAMAP----ADEDELVNMVATAAYVTDRPVCFRFP 539 (701)
T ss_pred CCCCccc-cccHHH-HHHhcCCCCEEEee----CCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2 33332 123444 467776 9999999 59999999999877435689998543
No 259
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=83.59 E-value=20 Score=34.37 Aligned_cols=116 Identities=18% Similarity=0.055 Sum_probs=67.1
Q ss_pred CCCCCcccc--ccchHHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-c-C----
Q 004509 483 TPEERNVRF--GVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-L-G---- 552 (748)
Q Consensus 483 ~~p~R~id~--GIaE~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~-g---- 552 (748)
..|.||+.. .-+=...++.|.|.++... =++++.. -..|..- ...+......++|+++++-..+.. . +
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p-~~~vv~i~GDG~f~~~-~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARP-DRPVVAITGDGSFLMS-LQELATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHST-TSEEEEEEEHHHHHHH-GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcC-cceeEEecCCcceeec-cchhHHHhhccceEEEEEEeCCcceEeccccc
Confidence 347888762 2233455667777776632 2666665 4456543 334555566788977776655432 1 0
Q ss_pred CCCC---------CCCChhhhHHHhcCCCcEEEeeCCH--HHHHHHHHHHHHcCCCcEEEE
Q 004509 553 EDGP---------THQPIEHLASFRAMPNILMLRPADG--NETAGAYKVAVANRKRPSILA 602 (748)
Q Consensus 553 ~dG~---------THq~~edia~lr~iPnl~V~~Psd~--~e~~~~l~~a~~~~~~P~~ir 602 (748)
..+. +.+.+.-..+.+++ |+..+.=.++ .|++.+|+.+++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 12222223334443 6666664444 999999999996 69999984
No 260
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=83.43 E-value=8.2 Score=42.36 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=43.3
Q ss_pred cEEEEEECCCCcccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004509 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 262 ~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
|+++...+..++-++.+. ...+...+++. |+.++.+ .|..++..+++.|.+ .++|++|.-
T Consensus 112 ~vv~~~~~g~~~~~G~tH---~~~~ea~~r~iP~l~V~~P----~d~~e~~~~l~~a~~-~~~Pv~i~~ 172 (327)
T PRK09212 112 PIVFRGPNGAAARVAAQH---SQCYAAWYSHIPGLKVVAP----YFAADCKGLLKTAIR-DPNPVIFLE 172 (327)
T ss_pred cEEEEeCCCCCCCCCccc---ccCHHHHHhcCCCCEEEee----CCHHHHHHHHHHHHh-CCCcEEEEE
Confidence 566665554444444443 22334788887 9999999 599999999999987 688999854
No 261
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=83.23 E-value=12 Score=44.48 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=70.0
Q ss_pred cccchhhHh-HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHH-HHHHcCCCcEEEEEECCCCc
Q 004509 196 VTTGPLGQG-MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASS-LAGHLGLGKLIAFYDDNHIS 273 (748)
Q Consensus 196 ~~tG~lG~g-l~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~-~A~~~~L~~li~Ivd~N~~~ 273 (748)
+.+|..=++ ++.|.|+|+. ..+.|+.+ =..|.. ..+|.+. .++..++ |++++....++.
T Consensus 324 i~~GIaE~~mvg~A~GlA~~----------------G~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~-pv~~v~~~~G~~ 384 (580)
T PRK05444 324 FDVGIAEQHAVTFAAGLATE----------------GLKPVVAI-YSTFLQ-RAYDQVIHDVALQNL-PVTFAIDRAGLV 384 (580)
T ss_pred cCCChHHHHHHHHHHHHHHC----------------CCeeEEEe-eHHHHH-HHHHHHHHHhhhcCC-CEEEEEeCCCcC
Confidence 344443333 3667788873 23444444 556664 6777554 4788888 788888755543
Q ss_pred -ccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004509 274 -IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 274 -i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
-++++. ...+|+ ..+++. |+.++.+ .|..++..+++.|.+..++|++|..
T Consensus 385 g~dG~tH-~~~edi-a~lr~iP~l~V~~P----sd~~e~~~~l~~a~~~~~~P~~ir~ 436 (580)
T PRK05444 385 GADGPTH-QGAFDL-SYLRCIPNMVIMAP----SDENELRQMLYTALAYDDGPIAIRY 436 (580)
T ss_pred CCCCccc-cccHHH-HHHhcCCCCEEEee----CCHHHHHHHHHHHHhCCCCcEEEEe
Confidence 223332 123343 467776 9999999 5999999999999863478998854
No 262
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=83.14 E-value=14 Score=37.54 Aligned_cols=114 Identities=15% Similarity=0.036 Sum_probs=63.9
Q ss_pred CCCCCccccccchHHHHH----HHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCC-cc----
Q 004509 483 TPEERNVRFGVREHGMGA----ICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL---- 551 (748)
Q Consensus 483 ~~p~R~id~GIaE~~~vg----~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~-~~---- 551 (748)
..|.+|+..+- ...+| .|.|.++... =+|++.. -..|+.-. .-+-.....++|+++++...+. +.
T Consensus 36 ~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p-~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEYG--YSCMGYEIAAGLGAKLAKP-DREVYVLVGDGSYLMLH-SEIVTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCCC--cchhhhHHHHHHHHHHhCC-CCeEEEEEccchhhccH-HHHHHHHHcCCCCEEEEEECCccHHHHHH
Confidence 45788886522 33344 5555554432 2566665 33454321 1133345568898776655543 21
Q ss_pred ----CC--CCCC--------------CCChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 552 ----GE--DGPT--------------HQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 552 ----g~--dG~T--------------Hq~~edia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
+. .+.. .+. .|.. +.+++ |+..+.-.++.|++.+++.+++ .++|++|-.
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLP-VDFAANARSL-GARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCC-CCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 10 0000 011 2333 33333 6777777999999999999996 689998864
No 263
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=82.98 E-value=6 Score=47.08 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=72.3
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=||+.+ -.|++++.+|-|+|.... +|-++ ++.+=+..+..-|.++-..+.||+++....... .+.+ .+|.+.
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d 117 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTG--EVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGGH--YQQEVD 117 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhcCCC--CCCccC
Confidence 456665 889999999999996532 44443 466666666666666666799999987322222 1322 466666
Q ss_pred hhHHHhcCC-CcEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCC
Q 004509 563 HLASFRAMP-NILMLRPADGNETAG----AYKVAVANRKRPSILALSRQ 606 (748)
Q Consensus 563 dia~lr~iP-nl~V~~Psd~~e~~~----~l~~a~~~~~~P~~irl~r~ 606 (748)
...+++.+= -. .....++.++.. +++.|+. ..+|+||-+|..
T Consensus 118 ~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~-~~gPV~i~iP~D 164 (597)
T PRK08273 118 LQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALA-ERTVTAVILPND 164 (597)
T ss_pred HHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCcc
Confidence 667787654 22 334445555544 4455554 468999999875
No 264
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=82.87 E-value=12 Score=40.16 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCCCCCCCccccccchhhHh-HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHH-HcCCCc
Q 004509 185 HPENFETPGIEVTTGPLGQG-MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG-HLGLGK 262 (748)
Q Consensus 185 hp~~~~~pgi~~~tG~lG~g-l~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~-~~~L~~ 262 (748)
||++. +..|..=|. ++.|.|+|++-+ .-.+++=+.|..+-.||=+...- +.+| |
T Consensus 47 fPdR~------~NvGIaEQ~mvg~AAGLA~~Gk-----------------~Pfv~tfa~F~s~Ra~EQir~~iay~~l-n 102 (312)
T COG3958 47 FPDRF------FNVGIAEQDMVGTAAGLALAGK-----------------KPFVSTFAAFLSRRAWEQIRNSIAYNNL-N 102 (312)
T ss_pred Cchhh------eecchHHHHHHHHHHHHHhcCC-----------------CceeechHHHHHHHHHHHHHHHhhhccC-C
Confidence 67763 556666664 478888888643 33456778999989999887555 5556 8
Q ss_pred EEEEEECCCCcc--cccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeecc
Q 004509 263 LIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 335 (748)
Q Consensus 263 li~Ivd~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~ 335 (748)
+-+|.-+-+++- ++++. +..+|++ .++++ ++.++.+ .|.-+..+++..+.+ .++|+.+ ++.|++
T Consensus 103 VKiv~t~~G~t~g~dG~sH-q~~EDia-imR~lpn~~V~~P----~D~v~~~~i~~~~~~-~~GP~Y~--Rl~R~~ 169 (312)
T COG3958 103 VKIVATHAGVTYGEDGSSH-QALEDIA-IMRGLPNMTVIAP----ADAVETRAILDQIAD-YKGPVYM--RLGRGK 169 (312)
T ss_pred eEEEEecCCcccCCCCccc-hhHHHHH-HHhcCCCceEEcc----CcHHHHHHHHHHHHh-cCCCEEE--EecCCC
Confidence 888888888764 33332 2345654 67776 6777776 377788888988887 7899988 555544
No 265
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=82.34 E-value=8.6 Score=37.12 Aligned_cols=100 Identities=18% Similarity=0.049 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCC------------CCCChhhh
Q 004509 499 GAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGP------------THQPIEHL 564 (748)
Q Consensus 499 vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~------------THq~~edi 564 (748)
++.|.|+++..+ =++++.. -..|.. .++.+......++|+++++...+... ..+. ......|+
T Consensus 52 ~~~a~Gaa~a~~-~~~vv~~~GDG~~~~-~~~~l~ta~~~~~~~~~iv~nN~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 52 LPAAIGAALAAP-DRPVVCIAGDGGFMM-TGQELATAVRYGLPVIVVVFNNGGYG-TIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred HHHHHHHHHhCC-CCcEEEEEcCcHHhc-cHHHHHHHHHcCCCcEEEEEECCccH-HHHHHHHHHcCCCcccccCCCCCH
Confidence 346666666542 1455544 334443 33334445567899888887766531 1110 11112233
Q ss_pred H-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 565 A-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 565 a-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
. +.++ -|+......+..|++.+++.+.. .++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 3 3333 37777788889999999999985 689998864
No 266
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=81.72 E-value=12 Score=42.06 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 283 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~ 283 (748)
++..|+|.+++ ..++++...=+++. ..+|.+.+++-..+|-+++++++-+-+..-++.....
T Consensus 60 A~~~a~GAs~a----------------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~ 121 (376)
T PRK08659 60 SMAAVIGASWA----------------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQG 121 (376)
T ss_pred HHHHHHhHHhh----------------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcH
Confidence 56677777776 45688887777777 8899999999999965666655544332222222222
Q ss_pred ccHHHHHhh---CCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeee
Q 004509 284 ENVDKRFEG---LGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTI 333 (748)
Q Consensus 284 ~~~~~~~~a---~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~k 333 (748)
+-...++.+ ++|-++.. .|+++.++...+|.+ ..+-|+++...+.-
T Consensus 122 D~~~~~~~~hgd~~~ivl~p----~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~l 173 (376)
T PRK08659 122 DMMQARWGTHGDHPIIALSP----SSVQECFDLTIRAFNLAEKYRTPVIVLADEVV 173 (376)
T ss_pred HHHHHhcccCCCcCcEEEeC----CCHHHHHHHHHHHHHHHHHHCCCEEEEechHh
Confidence 223345543 45877777 388776665555543 24569999777643
No 267
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=81.70 E-value=11 Score=38.07 Aligned_cols=118 Identities=11% Similarity=-0.010 Sum_probs=65.1
Q ss_pred CCCCCcccccc-ch-HHHHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhccCCCeEEEEec-CCCcc-C----
Q 004509 483 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALCEAGVIYVMTH-DSIGL-G---- 552 (748)
Q Consensus 483 ~~p~R~id~GI-aE-~~~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~~~pVi~v~t~-~g~~~-g---- 552 (748)
..|.+|+..+- .= ...+..|.|.++... =+|++++-. .|..- ..-+......++|+++++-. .+++. .
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~p-~r~vv~i~GDG~f~m~-~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAAP-DRPVVAIAGDGAWGMS-MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhCC-CCcEEEEEcchHHhcc-HHHHHHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 45788886421 11 223446666555432 267776543 45442 22244445568998877744 44431 0
Q ss_pred -CCCC-----CCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH--cCCCcEEEEE
Q 004509 553 -EDGP-----THQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA--NRKRPSILAL 603 (748)
Q Consensus 553 -~dG~-----THq~~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~--~~~~P~~irl 603 (748)
..+. .+.. -|.+-+..-=|+.-+.-.++.|+..+|+.+++ +.++|++|-+
T Consensus 119 ~~~~~~~~~~~~~~-~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 119 DFYNNRFVGTELES-ESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHcCCCcccccCCC-CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 0010 1111 23333332226677788899999999999985 1489999865
No 268
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=81.52 E-value=13 Score=44.14 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=71.9
Q ss_pred cccchhhH-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHH-HHHHHcCCCcEEEEEECCCCc
Q 004509 196 VTTGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SLAGHLGLGKLIAFYDDNHIS 273 (748)
Q Consensus 196 ~~tG~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal-~~A~~~~L~~li~Ivd~N~~~ 273 (748)
+.+|..=+ .++.|.|+|+.- -+.+++...+ |.. -.++-+ +.++..++ |++++++..+++
T Consensus 323 id~GIaEq~~v~~AaGlA~~G---------------~~Pvv~~fs~--Fl~-ra~dQi~~d~a~~~l-pv~~~~~~~g~~ 383 (581)
T PRK12315 323 VDVGIAEQESVAFASGIAANG---------------ARPVIFVNST--FLQ-RAYDQLSHDLAINNN-PAVMIVFGGSIS 383 (581)
T ss_pred cCCCchHHHHHHHHHHHHHCc---------------CeEEEEeeHH--HHH-HHHHHHHHHHHhcCC-CEEEEEECCccc
Confidence 34444333 356777888632 2345555555 332 456643 44678888 899999877776
Q ss_pred ccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004509 274 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 274 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
-+|++.. ..+|+ ..+++. |+.++.+ .|..++..+++.|.+..++|++|..
T Consensus 384 ~dG~TH~-~~~Di-a~lr~iPnl~V~~P----~d~~e~~~~l~~a~~~~~gP~~ir~ 434 (581)
T PRK12315 384 GNDVTHL-GIFDI-PMISNIPNLVYLAP----TTKEELIAMLEWALTQHEHPVAIRV 434 (581)
T ss_pred CCCcccc-ccHHH-HHHhcCCCCEEEec----CCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5665542 23444 467776 9999999 5899999999999863368999955
No 269
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=81.24 E-value=17 Score=43.78 Aligned_cols=105 Identities=18% Similarity=0.118 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHH-HHHHHHcCCCcEEEEEECCCCcc-ccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEA-SSLAGHLGLGKLIAFYDDNHISI-DGDTEIA 281 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Ea-l~~A~~~~L~~li~Ivd~N~~~i-~~~~~~~ 281 (748)
.++.|.|+|+.- -+.++++. ..|.. -.++- .+.++..+| |++++++..++.. ++++..
T Consensus 410 ~vg~AaGLA~~G---------------~kPvv~~f--s~Fl~-RA~DQI~~dval~~l-pVv~v~~~aG~vg~dG~TH~- 469 (677)
T PLN02582 410 AVTFAAGLACEG---------------LKPFCAIY--SSFLQ-RGYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC- 469 (677)
T ss_pred HHHHHHHHHHCC---------------CeEEEEec--HHHHH-HHHHHHHHHHHhcCC-CEEEEEECCCcccCCCCccc-
Confidence 346677777631 23455554 44543 56664 467788888 7888888766532 344321
Q ss_pred ccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeecc
Q 004509 282 FTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 335 (748)
Q Consensus 282 ~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~ 335 (748)
..+|+. ++++. |+.++.+ .|..++..+++.|.+..++|++|. ..|+.
T Consensus 470 ~~~Dia-~lr~iPnl~V~~P----sd~~E~~~~l~~al~~~~gPv~IR--~pr~~ 517 (677)
T PLN02582 470 GAFDVT-YMACLPNMVVMAP----SDEAELFHMVATAAAIDDRPSCFR--YPRGN 517 (677)
T ss_pred ccHHHH-HHhcCCCCEEEee----CCHHHHHHHHHHHHhCCCCCEEEE--EecCC
Confidence 223433 45665 9999999 589999999999986345899984 44554
No 270
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=81.17 E-value=51 Score=35.52 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCCCccEEEeehhH--HHHHHHHHHHhhccCCCeEEEEecCCCccCCCC----C----------CCCC-
Q 004509 498 MGAICNGIALHSPGLIPYCATFFVF--TDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG----P----------THQP- 560 (748)
Q Consensus 498 ~vg~AaGlA~~G~~~~Piv~~f~~F--~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG----~----------THq~- 560 (748)
.+++|.|+++... =++++.+-.+- ++....-+-..+..++|+++++-..+. +|.-+ + +.++
T Consensus 74 alpaAiGaklA~P-d~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~-yGmt~~q~s~tt~~g~~~~~~~~g~ 151 (286)
T PRK11867 74 ALAIATGLKLANP-DLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQI-YGLTKGQYSPTSPVGFVTKTTPYGS 151 (286)
T ss_pred HHHHHHHHHHhCC-CCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHH-HhhhcCccCCCCCCCcccccccCCC
Confidence 3456677665542 25666654433 232223333345678898877755443 22111 1 0011
Q ss_pred ----hhhhHHHhcCCC--cEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 561 ----IEHLASFRAMPN--ILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 561 ----~edia~lr~iPn--l~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
..-.++..+... +......+..|++.+|+.|++ .++|++|-+
T Consensus 152 ~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 152 IEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred CCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111233333332 223357899999999999997 699999876
No 271
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=80.86 E-value=15 Score=38.74 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=62.5
Q ss_pred HHHHHHHHhc----CCCCccEEEe-ehhHHH-HHHHHHHHhhccCCC-eEEEEecCCCccCCCCCCC--CChhhhH-HHh
Q 004509 499 GAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH--QPIEHLA-SFR 568 (748)
Q Consensus 499 vg~AaGlA~~----G~~~~Piv~~-f~~F~~-r~~dqIr~~a~~~~p-Vi~v~t~~g~~~g~dG~TH--q~~edia-~lr 568 (748)
++.|.|+|+. +..-+.||.+ -..|.. ..++.+...+..++| +++|+...++ +.+++++ ...+|++ .++
T Consensus 111 l~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~--~~~~~~~~~~~~~~~~~~~~ 188 (255)
T cd02012 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRI--QIDGPTDDILFTEDLAKKFE 188 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCc--cccCcHhhccCchhHHHHHH
Confidence 4566676654 1112344433 445543 456777767777886 6767655554 4456553 2334443 344
Q ss_pred cCCCcEEEeeC--CHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 569 AMPNILMLRPA--DGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 569 ~iPnl~V~~Ps--d~~e~~~~l~~a~~~~~~P~~irl 603 (748)
++ |+.++.-. |..++..+++.+.+..++|++|..
T Consensus 189 a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 189 AF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred Hc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 44 78887766 899999999988863378998875
No 272
>PLN02573 pyruvate decarboxylase
Probab=80.83 E-value=6.8 Score=46.46 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=70.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE-eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCCh---
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 561 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~-~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~--- 561 (748)
+++.+ --|++++.+|-|.|..-+ .++|. ++.+=+..+..-+.++-..+.||+++....... .+.++..||.+
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg--~gv~~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEecCccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 55554 789999999999997652 46654 455544445555555445689999997332222 24555566542
Q ss_pred ---hhhHHHhcCCCcEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCCC
Q 004509 562 ---EHLASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQK 607 (748)
Q Consensus 562 ---edia~lr~iPnl~V~~Psd~~e----~~~~l~~a~~~~~~P~~irl~r~~ 607 (748)
.++.+++.+-... ....++.+ +..+++.|+. ..+|+||-+|+.-
T Consensus 133 ~~~~~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~-~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCYQ-AVINNLEDAHELIDTAISTALK-ESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEEE-EEeCCHHHHHHHHHHHHHHHHh-cCCCEEEEeehhh
Confidence 2345666544322 22334444 4555666664 4689999998753
No 273
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=80.80 E-value=19 Score=36.25 Aligned_cols=101 Identities=14% Similarity=0.026 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCCCccEEEeehh--HHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCC--------------CC---
Q 004509 500 AICNGIALHSPGLIPYCATFFV--FTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------QP--- 560 (748)
Q Consensus 500 g~AaGlA~~G~~~~Piv~~f~~--F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~TH--------------q~--- 560 (748)
+.|.|.++... =+|++..-.+ |.+.....+......++||++++-..+. +|.-+..+ ++
T Consensus 58 paAiGa~la~p-~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~-yg~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
T cd03375 58 AVATGVKLANP-DLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQI-YGLTKGQASPTTPEGFKTKTTPYGNIE 135 (193)
T ss_pred HHHHHHHHhCC-CCeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCcc-cccCCCccCCCCCCCCcccCCCCCCCC
Confidence 35666555432 2677765433 3333333455556678998877655443 33222111 00
Q ss_pred -hhhh-HHHhcC--CCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 561 -IEHL-ASFRAM--PNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 561 -~edi-a~lr~i--Pnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
.-|. .+.+++ ++.......++.|++.+++.+++ .++|++|-+
T Consensus 136 ~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 136 EPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 0122 223332 22222468999999999999997 699999876
No 274
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=80.76 E-value=18 Score=34.91 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=49.4
Q ss_pred EEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccc--cHHHHHhhCCcEEEEEccCCCCHHHH
Q 004509 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTE--NVDKRFEGLGWHVIWVKNGNTGYDDI 310 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~--~~~~~~~a~G~~~~~v~dG~~D~~~l 310 (748)
.+++..|-|..+ ...+|..|...+. |+++|+-+......+... .... +....++. .+.+..+ .+.+++
T Consensus 67 v~~~~~gpG~~n---~~~~l~~a~~~~~-P~v~i~g~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~----~~~~~~ 136 (160)
T cd07034 67 AMTATSGPGLNL---MAEALYLAAGAEL-PLVIVVAQRPGPSTGLPK-PDQSDLMAARYGGH-PWPVLAP----SSVQEA 136 (160)
T ss_pred EEEeeCcchHHH---HHHHHHHHHhCCC-CEEEEEeeCCCCCCCCCC-cCcHHHHHHHhCCC-CEEEEeC----CCHHHH
Confidence 445556777776 6677888888876 777777554332221101 1112 22334444 5777777 366665
Q ss_pred HHHHHHHHh---cCCCCEEEEEE
Q 004509 311 RAAIKEAKA---VTDKPTLIRVT 330 (748)
Q Consensus 311 ~~al~~a~~---~~~~P~vI~~~ 330 (748)
.+.+++|.. ..++|++|...
T Consensus 137 ~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 137 FDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcC
Confidence 555555433 14579988653
No 275
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=80.64 E-value=27 Score=34.70 Aligned_cols=117 Identities=17% Similarity=0.069 Sum_probs=66.4
Q ss_pred CCCCCcccccc-c-hHHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCC-cc------
Q 004509 483 TPEERNVRFGV-R-EHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL------ 551 (748)
Q Consensus 483 ~~p~R~id~GI-a-E~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~-~~------ 551 (748)
..|.+|+..+- . =...++.|.|.++... =+|++.. -..|...+ .-+...+..++|+++++...+. +.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~~~~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARP-DKTVICIDGDGSFQMNI-QELATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCC-CCeEEEEEcccHHhccH-HHHHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 35788886532 1 1123456666665532 1566654 34455322 2244456678998877766653 21
Q ss_pred ---CCC-CCCCC-ChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 552 ---GED-GPTHQ-PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 552 ---g~d-G~THq-~~edia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
+.. ..++. ..-|.+ +.+++ |+.-+.-.+..|++.+++.+++ .++|++|-+
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 000 11111 112333 33333 6667777889999999999996 589999865
No 276
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=80.33 E-value=5.9 Score=52.81 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=80.7
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCChh
Q 004509 486 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 562 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~~e 562 (748)
=|++.+ .-|++++-+|-|+|.... +|.++ |..+-+..++..+-.+.+.+.||+++....... .+. | .+|.+.
T Consensus 340 i~~i~~-rhErsAafmAdGyAR~Tg--kpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~~~-g-a~Q~iD 414 (1655)
T PLN02980 340 TTCIAC-FDERSLAFHALGYARGSL--KPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQDA-G-ANQAIN 414 (1655)
T ss_pred CeEEec-cCcchHHHHHHHHHHHhC--CCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhcC-C-CCcccc
Confidence 366654 899999999999998654 66664 566666666777766677899999986332222 132 3 478888
Q ss_pred hhHHHhcCCCcEEEe--eCCH-------HHHHHHHHHHHHcCCCcEEEEEcC
Q 004509 563 HLASFRAMPNILMLR--PADG-------NETAGAYKVAVANRKRPSILALSR 605 (748)
Q Consensus 563 dia~lr~iPnl~V~~--Psd~-------~e~~~~l~~a~~~~~~P~~irl~r 605 (748)
+.++++.+-....-. |.+. ..+..+++.|.....||++|-+|.
T Consensus 415 q~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 415 QVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 889999888765554 4452 456666666665457999999984
No 277
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=79.54 E-value=4 Score=38.79 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHhcCCCCccEEEeehhHHHHHHHHHHHh-hccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCC-
Q 004509 494 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMP- 571 (748)
Q Consensus 494 aE~~~vg~AaGlA~~G~~~~Piv~~f~~F~~r~~dqIr~~-a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iP- 571 (748)
+|..-+|+|+|..+.|+ +|-.-+-.+=+..+.+.+-.. ..-+.|..++++|-|. +++ |--- ++.+-|++|
T Consensus 50 REEeg~GIcAGa~lAGk--k~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E-~i~A----QVpmGr~~~k 121 (172)
T COG4032 50 REEEGVGICAGAYLAGK--KPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGV-LKE-GIEA----QVPMGRALPK 121 (172)
T ss_pred chhcceeeehhhhhcCC--CcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccch-hhc-CCcc----ccccchhhHH
Confidence 57777899999999997 888766555555454444322 3468899999887665 444 2222 233444444
Q ss_pred -----CcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 004509 572 -----NILMLRPADGNETAGAYKVAVA---NRKRPSILALS 604 (748)
Q Consensus 572 -----nl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl~ 604 (748)
++-.+.|-.+.|+..++..+.. ....|+.+.++
T Consensus 122 iLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 122 ILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred HHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 3456778888886666655442 14778888764
No 278
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=79.32 E-value=20 Score=39.88 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=41.7
Q ss_pred cEEEEEECCCCcccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004509 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 328 (748)
Q Consensus 262 ~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~ 328 (748)
+++++.....++.++++.- ..+...+++. |+.++.+ .|..++..+++.+.+ .++|++|.
T Consensus 143 ~vv~~~~~g~~g~~G~tHs---~~~ea~lr~iPn~~V~~P----sd~~e~~~~l~~a~~-~~~P~~i~ 202 (355)
T PTZ00182 143 PIVIRGPNGAVGHGGAYHS---QSFEAYFAHVPGLKVVAP----SDPEDAKGLLKAAIR-DPNPVVFF 202 (355)
T ss_pred CEEEEeCCCCCCCCCCccc---chHHHHHhcCCCCEEEee----CCHHHHHHHHHHHHh-CCCcEEEE
Confidence 4555543334444555532 2334788887 9999999 589999999999987 68999885
No 279
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=78.96 E-value=22 Score=42.57 Aligned_cols=92 Identities=18% Similarity=0.123 Sum_probs=59.0
Q ss_pred EEEEEEcchhcchhhHHHHH-HHHHHcCCCcEEEEEECCCCc-ccccccccccccHHHHHhhC-CcEEEEEccCCCCHHH
Q 004509 233 YTYVILGDGCQMEGIANEAS-SLAGHLGLGKLIAFYDDNHIS-IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDD 309 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal-~~A~~~~L~~li~Ivd~N~~~-i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~ 309 (748)
.++++. +.|.. ..++-+ +.++..+| |++++++..++. .+|++.. ..+|+. .++++ |+.++.+ .|..+
T Consensus 425 Pvv~~f--s~Fl~-RA~DQI~~dva~~~l-pV~~v~~~aG~~g~dG~TH~-~~~Dia-~lr~iPnl~V~~P----sd~~E 494 (641)
T PLN02234 425 PFCTIY--SSFMQ-RAYDQVVHDVDLQKL-PVRFAIDRAGLMGADGPTHC-GAFDVT-FMACLPNMIVMAP----SDEAE 494 (641)
T ss_pred EEEEeh--HHHHH-HHHHHHHHHHhhcCC-CEEEEEeCCccCCCCCcccc-ccHHHH-HHhcCCCCEEEee----CCHHH
Confidence 344443 44543 556554 56678888 788888877753 2333321 223333 45565 9999999 58999
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeeeccC
Q 004509 310 IRAAIKEAKAVTDKPTLIRVTTTIGFG 336 (748)
Q Consensus 310 l~~al~~a~~~~~~P~vI~~~T~kg~G 336 (748)
+..+++.|....++|++| +..|+..
T Consensus 495 ~~~~l~~a~~~~~~Pv~i--r~~R~~~ 519 (641)
T PLN02234 495 LFNMVATAAAIDDRPSCF--RYHRGNG 519 (641)
T ss_pred HHHHHHHHHhCCCCCEEE--Eeecccc
Confidence 999999876534689998 5555543
No 280
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=78.66 E-value=36 Score=33.32 Aligned_cols=90 Identities=13% Similarity=-0.022 Sum_probs=52.8
Q ss_pred cEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHH--
Q 004509 232 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDD-- 309 (748)
Q Consensus 232 ~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~-- 309 (748)
..+++..|=|..+ ..-++..|...+. |+++|.-+......+.-. ....|..+.++.+--...++ .+.++
T Consensus 65 ~v~~~t~GpG~~n---~~~~l~~A~~~~~-Pvl~I~g~~~~~~~~~~~-~q~~d~~~~~~~~tk~~~~v----~~~~~~~ 135 (164)
T cd07039 65 GVCLGSSGPGAIH---LLNGLYDAKRDRA-PVLAIAGQVPTDELGTDY-FQEVDLLALFKDVAVYNETV----TSPEQLP 135 (164)
T ss_pred EEEEECCCCcHHH---HHHHHHHHHhcCC-CEEEEecCCcccccCCCC-CcccCHHHHHHHhhcEEEEe----CCHHHHH
Confidence 3445555777766 5567888888887 788886544322211111 11125677788775444556 25444
Q ss_pred --HHHHHHHHHhcCCCCEEEEEEe
Q 004509 310 --IRAAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 310 --l~~al~~a~~~~~~P~vI~~~T 331 (748)
+.+|++.+.. ..+|+.|++..
T Consensus 136 ~~i~~A~~~a~~-~~GPV~l~iP~ 158 (164)
T cd07039 136 ELLDRAIRTAIA-KRGVAVLILPG 158 (164)
T ss_pred HHHHHHHHHHhc-CCCCEEEEeCh
Confidence 5555555554 56899998753
No 281
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=78.27 E-value=15 Score=40.32 Aligned_cols=39 Identities=13% Similarity=0.345 Sum_probs=33.2
Q ss_pred cHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004509 285 NVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 328 (748)
Q Consensus 285 ~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~ 328 (748)
.+..+++.. ||.++.+ .|..++...++.+.+ .++|++|.
T Consensus 132 ~~ea~~~~iPgl~V~~P----sd~~d~~~~l~~a~~-~~~Pv~ir 171 (327)
T CHL00144 132 RLESYFQSVPGLQIVAC----STPYNAKGLLKSAIR-SNNPVIFF 171 (327)
T ss_pred cHHHHHhcCCCCEEEEe----CCHHHHHHHHHHHHh-CCCcEEEE
Confidence 455888886 9999999 599999999999987 68999986
No 282
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=78.03 E-value=17 Score=36.69 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=65.4
Q ss_pred CCCCCccccccchHH----HHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhccCCCeEEEEecCC-CccCC--
Q 004509 483 TPEERNVRFGVREHG----MGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGE-- 553 (748)
Q Consensus 483 ~~p~R~id~GIaE~~----~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~~~pVi~v~t~~g-~~~g~-- 553 (748)
..|.+|++.+- .+ .++.|.|.++... =+|++++-. .|..-+ .-+......++|+++++-..+ ++.-.
T Consensus 45 ~~~~~~~~~~~--~GsmG~~lpaaiGa~la~p-~~~vv~i~GDG~f~m~~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~ 120 (202)
T cd02006 45 YKPRHWINCGQ--AGPLGWTVPAALGVAAADP-DRQVVALSGDYDFQFMI-EELAVGAQHRIPYIHVLVNNAYLGLIRQA 120 (202)
T ss_pred CCCCeEEccCC--ccchhhhhHHHHhHHhhCC-CCeEEEEEeChHhhccH-HHHHHHHHhCCCeEEEEEeCchHHHHHHH
Confidence 45788887642 23 3345666555432 267776544 454322 123444566889877766554 33100
Q ss_pred -----CC----CCCCC---------hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 004509 554 -----DG----PTHQP---------IEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 603 (748)
Q Consensus 554 -----dG----~THq~---------~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~irl 603 (748)
++ ..+.. .-|.+-+..-=|+.-+.-.++.|+..+|+.+++ ..++|++|-+
T Consensus 121 q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 121 QRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 00 00110 012222222226777888999999999999985 2588998865
No 283
>PTZ00089 transketolase; Provisional
Probab=77.75 E-value=21 Score=43.15 Aligned_cols=103 Identities=18% Similarity=0.032 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCC--Cccccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH--ISIDGDTEIA 281 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~--~~i~~~~~~~ 281 (748)
.++.|.|+|+..- -..+++.. ..|.. -.++.+..++..+| |+++|....+ ++.+|+|..
T Consensus 415 mv~~AaGlA~~~G--------------~~P~~~tf--~~Fl~-Ra~dqir~~al~~l-pV~~v~thdg~~~g~DG~THq- 475 (661)
T PTZ00089 415 MCAIMNGIAAHGG--------------FIPFGATF--LNFYG-YALGAVRLAALSHH-PVIYVATHDSIGLGEDGPTHQ- 475 (661)
T ss_pred HHHHHHHHHHcCC--------------CeEEEEeh--HHHHH-HHHHHHHHHHhcCC-CeEEEEeCCceecCCCCCCcc-
Confidence 4567778877211 12344443 47765 78999999999999 7888875444 445555542
Q ss_pred ccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004509 282 FTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 282 ~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~ 330 (748)
..+|+. .+++. |+.++.+ .|..++..+++.|.+..++|++|...
T Consensus 476 ~iedia-~lR~iPn~~V~~P----aD~~E~~~~l~~al~~~~gP~~irl~ 520 (661)
T PTZ00089 476 PVETLA-LLRATPNLLVIRP----ADGTETSGAYALALANAKTPTILCLS 520 (661)
T ss_pred cHHHHH-HHhcCCCcEEEec----CCHHHHHHHHHHHHHcCCCCEEEEec
Confidence 234444 56776 9999999 58999999999998536799999643
No 284
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=77.50 E-value=19 Score=35.67 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCCccEEEee--hhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCC-----------CCChhhhH-
Q 004509 500 AICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT-----------HQPIEHLA- 565 (748)
Q Consensus 500 g~AaGlA~~G~~~~Piv~~f--~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~T-----------Hq~~edia- 565 (748)
+.|.|+++... =++++..- ..|+.-.+.-+......++|+++++...+. +|.-+.. .+...|.+
T Consensus 58 ~~AiGa~la~p-~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~-~g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASE-DKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRT-TAMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCC-CCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcc-eeccCCCCCCCCcccccCCCCccCHHH
Confidence 35566655442 25666653 345432233355556678998777766553 3322211 01112222
Q ss_pred HHhc--CCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 566 SFRA--MPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 566 ~lr~--iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
+.++ ++...|-.|.+-.++..+++.+++ .++|++|..
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 333444444455555588899886 589998865
No 285
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=77.33 E-value=20 Score=35.23 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=53.3
Q ss_pred EEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCC------
Q 004509 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTG------ 306 (748)
Q Consensus 233 ~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D------ 306 (748)
.+++..|=|..+ ..-++..|...+. |+++|.-+-.....+.... ...|....++.+--...++.+.. +
T Consensus 63 v~~~t~GpG~~n---~~~gl~~A~~~~~-Pvl~i~g~~~~~~~~~~~~-q~~d~~~l~~~vtk~~~~v~~~~-~~~~~~~ 136 (162)
T cd07037 63 AVVCTSGTAVAN---LLPAVVEAYYSGV-PLLVLTADRPPELRGTGAN-QTIDQVGLFGDYVRWSVDLPPPE-DDDDLWY 136 (162)
T ss_pred EEEECCchHHHH---HhHHHHHHHhcCC-CEEEEECCCCHHhcCCCCC-cccchhhhccceeeEEEecCCcc-cchhHHH
Confidence 344444666666 4457888888886 7888865433322221111 11244556666543344453444 5
Q ss_pred -HHHHHHHHHHHHhcCCCCEEEEEE
Q 004509 307 -YDDIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 307 -~~~l~~al~~a~~~~~~P~vI~~~ 330 (748)
.+.+.+|+..|..-..+|++|++.
T Consensus 137 ~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 137 LLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEecc
Confidence 466777777776534589999864
No 286
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=77.22 E-value=65 Score=32.27 Aligned_cols=115 Identities=16% Similarity=0.045 Sum_probs=58.5
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCC-CeEE-EEecCCCccCCCCCCCC
Q 004509 484 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEA-GVIY-VMTHDSIGLGEDGPTHQ 559 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~-pVi~-v~t~~g~~~g~dG~THq 559 (748)
.|.+|+..|-- ...++.|.|+++... =+|++.+ -..|..- ..-+...+..++ |+++ |....+++.-....+..
T Consensus 40 ~~~~~~~~g~m-G~~lpaAiGaala~p-~~~Vv~i~GDG~f~m~-~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~ 116 (188)
T cd03371 40 HAQDFLTVGSM-GHASQIALGIALARP-DRKVVCIDGDGAALMH-MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVS 116 (188)
T ss_pred ccCceeecCcc-ccHHHHHHHHHHhCC-CCcEEEEeCCcHHHhh-ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCC
Confidence 45888864221 112356666665432 1566655 3445421 122334444554 5544 44444433210011111
Q ss_pred ChhhhH-HHhcCCCcEE-EeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 560 PIEHLA-SFRAMPNILM-LRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 560 ~~edia-~lr~iPnl~V-~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
..-|.+ +.+++ |+.- ....+..|+..+++.+++ .++|++|.+
T Consensus 117 ~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 117 FDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112222 33333 4543 456799999999999996 589999865
No 287
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=76.38 E-value=18 Score=39.20 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCC--------------CC---
Q 004509 499 GAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT--------------HQ--- 559 (748)
Q Consensus 499 vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~T--------------Hq--- 559 (748)
+.+|.|+++... =++++.+ -.+|.......+-..+..++||++++-..+. +|.-+.+ .+
T Consensus 76 lpaAiGaklA~p-d~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~-YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 76 IAFATGAKLANP-DLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGI-YGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHCC-CCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCch-hhcccCcccCCcCCCcccccccCCCc
Confidence 456667655432 2566655 3344333333444456778998887755443 3221211 01
Q ss_pred -ChhhhHHHhcCCCcEEE---eeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 560 -PIEHLASFRAMPNILML---RPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 560 -~~edia~lr~iPnl~V~---~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
...|+..+..--|...+ ...+..|+..+++.|++ +++|++|-+
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233333333355544 68999999999999996 699999875
No 288
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=75.95 E-value=15 Score=43.21 Aligned_cols=117 Identities=18% Similarity=0.091 Sum_probs=71.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCC-CCC--
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPT-HQP-- 560 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~T-Hq~-- 560 (748)
|++.+ --|++++-+|-|+|..-. +|-|+ ++.+=...+...|..+...+.||+++....... .+.+... ||.
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~ 116 (535)
T TIGR03394 40 PLHTL-SHEPAVGFAADAAARYRG--TLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRT 116 (535)
T ss_pred eEEcc-cCcchHHHHHhHHHHhhC--CceEEEEecchHHHhhhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccc
Confidence 67764 889999999999997542 34443 455655556666666666799999997322221 2332222 453
Q ss_pred hh-hhHHHhcCCCc--EEEeeCC-HHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 004509 561 IE-HLASFRAMPNI--LMLRPAD-GNETAGAYKVAVANRKRPSILALSRQK 607 (748)
Q Consensus 561 ~e-dia~lr~iPnl--~V~~Psd-~~e~~~~l~~a~~~~~~P~~irl~r~~ 607 (748)
+. ...+++.+=.. .|..|.+ +..+..+++.|+. .++|+||-+|+.-
T Consensus 117 ~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 117 LDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred hHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 32 34677765433 2233433 3345666666665 5799999998753
No 289
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=75.92 E-value=52 Score=32.79 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=59.5
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCccEEEee--hhHHHHHHHHHHHhhccC-CCeEEEEecCCCccCCCCC--CC
Q 004509 484 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCE-AGVIYVMTHDSIGLGEDGP--TH 558 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f--~~F~~r~~dqIr~~a~~~-~pVi~v~t~~g~~~g~dG~--TH 558 (748)
.|.+++..|--= ..++.|.|.++.-. +|+++.- ..|..-+ .-+...+..+ +|+++++-..+. +|.-+. +.
T Consensus 34 ~~~~~~~~gsmG-~~lpaAiGa~la~~--~~Vv~i~GDG~f~m~~-~el~ta~~~~~~pv~~vV~NN~~-yg~~~~q~~~ 108 (181)
T TIGR03846 34 RPLNFYMLGSMG-LASSIGLGLALATD--RTVIVIDGDGSLLMNL-GVLPTIAAESPKNLILVILDNGA-YGSTGNQPTP 108 (181)
T ss_pred CCCCeeeccccc-cHHHHHHHHHHcCC--CcEEEEEcchHHHhhh-hHHHHHHHhCCCCeEEEEEeCCc-cccccCcCCC
Confidence 477877533211 12346666665432 6777653 3454221 2233344455 588777755543 232221 11
Q ss_pred C-ChhhhH-HHhcCCCcEEEe-eCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 559 Q-PIEHLA-SFRAMPNILMLR-PADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 559 q-~~edia-~lr~iPnl~V~~-Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
. ..-|.+ +.+++ |+.-.. ..++.|+..+|+ +++ .++|++|-.
T Consensus 109 ~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~li~v 153 (181)
T TIGR03846 109 ASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPTFIHV 153 (181)
T ss_pred CCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCEEEEE
Confidence 1 011222 23332 455555 788999999997 775 689999865
No 290
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=75.31 E-value=17 Score=40.30 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=50.1
Q ss_pred HHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhh----HHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcE
Q 004509 527 RAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL----ASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPS 599 (748)
Q Consensus 527 ~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edi----a~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~ 599 (748)
++.+..++..++||+|++-+-+++.+. --..|.-.++ +.--.||+++| -=.|...+..+.+.|+++ .++|+
T Consensus 177 hEalN~A~v~klPvvf~ieNN~yAiSv-p~~~q~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPt 254 (358)
T COG1071 177 HEALNFAAVWKLPVVFVIENNQYAISV-PRSRQTAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPT 254 (358)
T ss_pred HHHHHHHHHhcCCEEEEEecCCceeec-chhhcccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCE
Confidence 445555689999999999988887652 2222333322 23338999999 666666666666666643 46899
Q ss_pred EEEE
Q 004509 600 ILAL 603 (748)
Q Consensus 600 ~irl 603 (748)
+|-.
T Consensus 255 LIE~ 258 (358)
T COG1071 255 LIEA 258 (358)
T ss_pred EEEE
Confidence 9864
No 291
>PRK06154 hypothetical protein; Provisional
Probab=74.36 E-value=23 Score=41.90 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCccccccchHHHHHHHHHHHhc-C-CCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCCCCCC
Q 004509 486 ERNVRFGVREHGMGAICNGIALH-S-PGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQP 560 (748)
Q Consensus 486 ~R~id~GIaE~~~vg~AaGlA~~-G-~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~THq~ 560 (748)
=|+|.+ --|++.+.+|.|+|.. | . +|-++ ++.+=+..+..-|.+....+.||+++....... .+. ++.
T Consensus 55 i~~i~~-rhE~~A~~mAdgyar~t~g~--~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~-~~~--- 127 (565)
T PRK06154 55 IRPVIA-RTERVAVHMADGYARATSGE--RVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDV-APN--- 127 (565)
T ss_pred CeEEee-CcHHHHHHHHHHHHHhcCCC--CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccccC-CCC---
Confidence 466664 8999999999999974 2 2 34443 466655556666666667899999987221111 121 112
Q ss_pred hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 561 IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 561 ~edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
+....+++.+=. -.....++.++..+++.|++ ...||+||-+|+.
T Consensus 128 ~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 128 FESLRNYRHITK-WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred cchhhhHhhcce-eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 233466776554 33455666666666665553 2479999999865
No 292
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=74.26 E-value=21 Score=38.32 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCCccEEEeehh--HHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCC-----------------
Q 004509 498 MGAICNGIALHSPGLIPYCATFFV--FTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH----------------- 558 (748)
Q Consensus 498 ~vg~AaGlA~~G~~~~Piv~~f~~--F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~TH----------------- 558 (748)
.+..|.|+.+... =+|++..-.+ |..-....+-..+..++||++++-..+. +|.-|.+.
T Consensus 65 alp~AiGaklA~p-d~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~-Yg~t~~Q~s~~t~~g~~~~~~p~g~ 142 (280)
T PRK11869 65 AIPAATAVKATNP-ELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQV-YGLTKGQASPTTLKGFKTPTQPWGV 142 (280)
T ss_pred HHHHHHHHHHHCC-CCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHH-HhhhcceecCCCCCCcccccCCCCc
Confidence 3456667666553 2677765443 4332244455556779998888765443 22111000
Q ss_pred -CChhhhHHHhcCCCcEEEe---eCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 559 -QPIEHLASFRAMPNILMLR---PADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 559 -q~~edia~lr~iPnl~V~~---Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
..--|+.-+..--|...++ +.++.|++.+++.|++ .++|++|-.
T Consensus 143 ~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 143 FEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred cCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0111333333333555555 9999999999999997 699999976
No 293
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=72.97 E-value=29 Score=38.57 Aligned_cols=106 Identities=9% Similarity=-0.014 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 283 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~ 283 (748)
++..|+|.+++ ..|+++.+.|+.+. ..+|.+..|+-..+|-++++++.-+=+. +.+.. ..
T Consensus 60 A~~~a~GAs~a----------------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~~p~~-g~t~~-eq 119 (352)
T PRK07119 60 AINMVYGAAAT----------------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRGGPGL-GNIQP-SQ 119 (352)
T ss_pred HHHHHHHHHhh----------------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccCCCCC-CCCcc-hh
Confidence 56677787776 45789999999999 9999999999999955554444331111 11111 11
Q ss_pred ccHH-H-HHh---hCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeee
Q 004509 284 ENVD-K-RFE---GLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTI 333 (748)
Q Consensus 284 ~~~~-~-~~~---a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~k 333 (748)
.|+. . +.. .++|-++.+ .|+++.++...+|.+ ...-|+++-..+.-
T Consensus 120 ~D~~~~~~~~ghgd~~~~vl~p----~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~l 173 (352)
T PRK07119 120 GDYFQAVKGGGHGDYRLIVLAP----SSVQEMVDLTMLAFDLADKYRNPVMVLGDGVL 173 (352)
T ss_pred HHHHHHHhcCCCCCcceEEEeC----CCHHHHHHHHHHHHHHHHHhCCCEEEEcchhh
Confidence 2222 1 111 346888777 377766555544433 14669998777654
No 294
>PRK12754 transketolase; Reviewed
Probab=72.64 E-value=31 Score=41.64 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=60.6
Q ss_pred chhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcc--cccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHH
Q 004509 240 DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKE 316 (748)
Q Consensus 240 DG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~ 316 (748)
=..|.. ..++++.+++..+| |+++|...-+++. +|+|. ...+|++ .+++. |+.++++ .|..++..+++.
T Consensus 434 f~~F~~-r~~~qir~~a~~~l-~V~~v~th~gi~~G~DG~TH-q~iEdla-~lR~iPn~~V~~P----aD~~E~~~~~~~ 505 (663)
T PRK12754 434 FLMFVE-YARNAVRMAALMKQ-RQVMVYTHDSIGLGEDGPTH-QPVEQVA-SLRVTPNMSTWRP----CDQVESAVAWKY 505 (663)
T ss_pred eHHHHH-HHHHHHHHHHHcCC-CeEEEEECCccccCCCCCCc-ccHHHHH-HHhcCCCcEEecC----CCHHHHHHHHHH
Confidence 346665 89999999999998 7888877766654 44443 2334544 56776 9999999 488899999999
Q ss_pred HHhcCCCCEEEEEE
Q 004509 317 AKAVTDKPTLIRVT 330 (748)
Q Consensus 317 a~~~~~~P~vI~~~ 330 (748)
+.+..++|+.|...
T Consensus 506 a~~~~~gP~yirl~ 519 (663)
T PRK12754 506 GVERQDGPTALILS 519 (663)
T ss_pred HHhCCCCCEEEEeC
Confidence 88744799987543
No 295
>PRK12753 transketolase; Reviewed
Probab=72.40 E-value=37 Score=41.03 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=61.3
Q ss_pred cchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcc--cccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHH
Q 004509 239 GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIK 315 (748)
Q Consensus 239 GDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~ 315 (748)
.-..|.. ..++++.+++..+| |+++|.-.-+++. +|+|.. ..+|++ .+++. |+.++.+ .|..++..+++
T Consensus 433 tf~~F~~-r~~~qir~~a~~~l-~V~~v~thdg~~~G~DG~THq-~iedla-~lR~iPn~~v~~P----aD~~E~~~~~~ 504 (663)
T PRK12753 433 TFLMFVE-YARNAARMAALMKA-RQIMVYTHDSIGLGEDGPTHQ-PVEQLA-SLRLTPNFSTWRP----CDQVEAAVAWK 504 (663)
T ss_pred ehHHHHH-HHHHHHHHHHhcCC-CeEEEEeCCCcccCCCCcccc-cHHHHH-HHhcCCCCEEEcc----CCHHHHHHHHH
Confidence 3456765 89999999999998 7888766665554 454432 334544 57776 9999999 48889999999
Q ss_pred HHHhcCCCCEEEEEE
Q 004509 316 EAKAVTDKPTLIRVT 330 (748)
Q Consensus 316 ~a~~~~~~P~vI~~~ 330 (748)
.|.+..++|++|...
T Consensus 505 ~al~~~~gP~~irl~ 519 (663)
T PRK12753 505 LAIERHNGPTALILS 519 (663)
T ss_pred HHHhcCCCCEEEEec
Confidence 988635789988554
No 296
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=72.08 E-value=14 Score=38.41 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 283 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~ 283 (748)
++..++|.+++ ..++++...=.++. ...|.|..++..+++-++++++.-+-+-..++.. ..
T Consensus 48 A~~~~~GAs~a----------------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~-~q 108 (230)
T PF01855_consen 48 AMEAAIGASAA----------------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP-EQ 108 (230)
T ss_dssp HHHHHHHHHHT----------------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB--S
T ss_pred HHHHHHHHHhc----------------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC-Ch
Confidence 45566677765 34677887777777 8899999999999965555554332211111211 11
Q ss_pred ccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeec
Q 004509 284 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIG 334 (748)
Q Consensus 284 ~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg 334 (748)
.|+. ..+.+||-++.. .|.++..+....|.+ ....|+++...+..+
T Consensus 109 ~D~~-~~~d~~~~vl~p----~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 109 DDLM-AARDSGWIVLAP----SSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp HHHH-HTTTSS-EEEE------SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred hHHH-HHHhcCeEEEeC----CCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 2222 234789999888 377765555444433 246799987776553
No 297
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=72.06 E-value=49 Score=32.29 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=49.9
Q ss_pred EEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccc-c---c-c--cccccHHHHHhhCCcEEEEEccCCCC
Q 004509 234 TYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD-T---E-I--AFTENVDKRFEGLGWHVIWVKNGNTG 306 (748)
Q Consensus 234 v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~-~---~-~--~~~~~~~~~~~a~G~~~~~v~dG~~D 306 (748)
+++..|=|..+ ..-++..|...+. |+++|.-+......+. . + . ...+|....++.+-=...++.+..+-
T Consensus 63 ~~~t~GpG~~n---~~~gl~~A~~~~~-Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i 138 (162)
T cd07038 63 LVTTYGVGELS---ALNGIAGAYAEHV-PVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENA 138 (162)
T ss_pred EEEcCCccHHH---HHHHHHHHHHcCC-CEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHH
Confidence 33334666655 5557888888887 7888865443221111 1 0 0 11124567787775455556222201
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEE
Q 004509 307 YDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 307 ~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
.+.+.+|++.|.. ..+|+.|++
T Consensus 139 ~~~v~~A~~~a~s-~~gPV~l~i 160 (162)
T cd07038 139 AEEIDRVLRTALR-ESRPVYIEI 160 (162)
T ss_pred HHHHHHHHHHHHH-CCCCEEEEc
Confidence 2345566666665 458999976
No 298
>PLN02790 transketolase
Probab=71.64 E-value=37 Score=40.98 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCCcEEEEEECCCC--cccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCC
Q 004509 247 IANEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 323 (748)
Q Consensus 247 ~~~Eal~~A~~~~L~~li~Ivd~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~ 323 (748)
..++++..++..+| |+++|+...+. +.+|+|.. ..+|+. .+++. |+.++.+ .|..++.++++.+.+..++
T Consensus 431 ~~~~~ir~~al~~l-pV~~v~thdg~~~G~DG~THq-~iedla-~lR~iPnl~V~~P----aD~~E~~~~l~~al~~~~g 503 (654)
T PLN02790 431 YMRAAMRLSALSEA-GVIYVMTHDSIGLGEDGPTHQ-PIEHLA-SLRAMPNILMLRP----ADGNETAGAYKVAVTNRKR 503 (654)
T ss_pred HHHHHHHHHHhcCC-CeEEEEECCceeecCCCCCcc-cHHHHH-HhcCCCCcEEEeC----CCHHHHHHHHHHHHHcCCC
Confidence 57788899999999 78888854444 44555542 234444 56775 9999999 5889999999998764578
Q ss_pred CEEEEE
Q 004509 324 PTLIRV 329 (748)
Q Consensus 324 P~vI~~ 329 (748)
|++|..
T Consensus 504 P~~irl 509 (654)
T PLN02790 504 PTVLAL 509 (654)
T ss_pred CEEEEe
Confidence 998854
No 299
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=71.61 E-value=78 Score=33.97 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHH-HHHhhccCCCeEEEEecCCCccCCCCCCC--------------C
Q 004509 497 GMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAA-IRISALCEAGVIYVMTHDSIGLGEDGPTH--------------Q 559 (748)
Q Consensus 497 ~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dq-Ir~~a~~~~pVi~v~t~~g~~~g~dG~TH--------------q 559 (748)
..+..|.|+++.-. =++++.. -..|.. +-.+ +-..+..++||++++-..+. +|.-+.+. .
T Consensus 72 ~alPaAiGaklA~P-dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~-yGmt~~Q~~~~t~~g~~~~~~~~ 148 (277)
T PRK09628 72 RAVAYATGIKLANP-DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFI-YGLTNSQTSPTTPKGMWTVTAQY 148 (277)
T ss_pred cHHHHHHHHHHHCC-CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChH-HhcceecccCCCCCCceeeeccC
Confidence 45567777665432 2566655 344532 1122 22246678998888765544 33322100 0
Q ss_pred ----ChhhhHHHhcCCCcEE---EeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004509 560 ----PIEHLASFRAMPNILM---LRPADGNETAGAYKVAVANRKRPSILALS 604 (748)
Q Consensus 560 ----~~edia~lr~iPnl~V---~~Psd~~e~~~~l~~a~~~~~~P~~irl~ 604 (748)
+..|.+-+..-=|+.- ....++.|++.+++.|++ .++|++|-+.
T Consensus 149 g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~-~~Gp~lIeV~ 199 (277)
T PRK09628 149 GNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS-HKGFSFFDVF 199 (277)
T ss_pred CCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 1112233322224443 578999999999999997 6999999763
No 300
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=71.38 E-value=21 Score=39.43 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=48.4
Q ss_pred ccEEEeehh--HHHH-HHHHHHHhhccCCCeEEEEecCCCccCCCCCCCC--ChhhhHHH---hcCCCcEEEeeCCHHH-
Q 004509 513 IPYCATFFV--FTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLASF---RAMPNILMLRPADGNE- 583 (748)
Q Consensus 513 ~Piv~~f~~--F~~r-~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq--~~edia~l---r~iPnl~V~~Psd~~e- 583 (748)
+++++++.+ |..- .++.+...+..++||++++-..+++.+ .++++ ...|++-+ -.+|++.|= -.|..+
T Consensus 145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~--~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~d~~av 221 (341)
T TIGR03181 145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAIS--VPRSKQTAAPTLAQKAIAYGIPGVQVD-GNDVLAV 221 (341)
T ss_pred CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccc--cchhhhhCCcCHHHHHhhCCCCEEEEC-CCCHHHH
Confidence 566666554 5432 234466667899999999988775432 22221 22333322 245555541 122221
Q ss_pred ---HHHHHHHHHHcCCCcEEEEE
Q 004509 584 ---TAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 584 ---~~~~l~~a~~~~~~P~~irl 603 (748)
++.+++.+.. .++|++|-+
T Consensus 222 ~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 222 YAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred HHHHHHHHHHHHc-CCCCEEEEE
Confidence 3566666664 589999965
No 301
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=69.88 E-value=58 Score=32.89 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=58.6
Q ss_pred HHHHHHHHhc----CCCCccEEEeehh--HHH-HHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhHHHhcCC
Q 004509 499 GAICNGIALH----SPGLIPYCATFFV--FTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMP 571 (748)
Q Consensus 499 vg~AaGlA~~----G~~~~Piv~~f~~--F~~-r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia~lr~iP 571 (748)
+++|.|+|+. |.. .++++...+ |.. ..++.+...+....|+++++...+++ .+++|- ... ..++. -
T Consensus 81 l~~A~G~Ala~k~~~~~-~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~--~~~~~~-~~~--~~~~a-~ 153 (195)
T cd02007 81 ISAALGMAVARDLKGKK-RKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMS--ISPNVG-TPG--NLFEE-L 153 (195)
T ss_pred HHHHHHHHHHHHHhCCC-CeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcc--cCCCCC-CHH--HHHHh-c
Confidence 4567777653 211 344444333 332 45677776666699999998666654 445543 222 33444 3
Q ss_pred CcEE---EeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 572 NILM---LRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 572 nl~V---~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
|+.+ +...|..++..+++.+.+ .++|++|..
T Consensus 154 G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~ 187 (195)
T cd02007 154 GFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHV 187 (195)
T ss_pred CCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 4444 455577888888888775 578999865
No 302
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=68.79 E-value=36 Score=33.35 Aligned_cols=114 Identities=19% Similarity=0.133 Sum_probs=63.6
Q ss_pred CCCCccccccchHHH---HHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCC-CccCC----
Q 004509 484 PEERNVRFGVREHGM---GAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGE---- 553 (748)
Q Consensus 484 ~p~R~id~GIaE~~~---vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g-~~~g~---- 553 (748)
.|.+|+..+- ..| +..|.|.++.-. -+++++. -..|..- ..-+......++|+++++...+ ++.-.
T Consensus 39 ~~~~~~~~~~--g~mG~~lp~aiGaala~~-~~~vv~i~GDG~f~~~-~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~ 114 (178)
T cd02002 39 RPGSYFTLRG--GGLGWGLPAAVGAALANP-DRKVVAIIGDGSFMYT-IQALWTAARYGLPVTVVILNNRGYGALRSFLK 114 (178)
T ss_pred CCCCeeccCC--ccccchHHHHHHHHhcCC-CCeEEEEEcCchhhcc-HHHHHHHHHhCCCeEEEEEcCccHHHHHHHHH
Confidence 5788887533 333 345666655431 1456654 3445432 2224344456899888876664 33200
Q ss_pred ----C--------CC-CCCChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 554 ----D--------GP-THQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 554 ----d--------G~-THq~~edia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
+ +. ......|.+ +.+++ |+..+.-.+..|++.+++.+++ .++|++|-.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 115 RVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 00 001112333 33333 6666677889999999999996 589998854
No 303
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=67.21 E-value=27 Score=41.29 Aligned_cols=109 Identities=14% Similarity=0.032 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 283 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~ 283 (748)
++..|+|.++| ..++++.+.=.++. ...|.+.+|+-..+|-+++++++-+-+..-++.....
T Consensus 249 A~~~a~GAs~a----------------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~ 310 (562)
T TIGR03710 249 AINMAIGASYA----------------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQS 310 (562)
T ss_pred HHHHHHhHHhc----------------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHH
Confidence 55667777776 34677887777887 8999999999999965555555544332222322222
Q ss_pred ccHHHHHh---hCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeec
Q 004509 284 ENVDKRFE---GLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIG 334 (748)
Q Consensus 284 ~~~~~~~~---a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~kg 334 (748)
+-+..++. .++|-++.. .|+++.++...+|.+ ...-|+++...+...
T Consensus 311 D~~~~~~~~hgd~~~ivl~p----~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~ 363 (562)
T TIGR03710 311 DLLFALYGGHGEFPRIVLAP----GSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLA 363 (562)
T ss_pred HHHHHhcCCCCCcCceEEcC----CCHHHHHHHHHHHHHHHHHhcCCEEEEechHHh
Confidence 22233333 356888777 377765555544433 256799987776653
No 304
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=65.15 E-value=29 Score=40.78 Aligned_cols=115 Identities=16% Similarity=0.025 Sum_probs=72.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCccEEE-eehhHHHHHHHHHHHhhccCCCeEEEEecCCCc-cCCCCC--------
Q 004509 487 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGP-------- 556 (748)
Q Consensus 487 R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~-~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~-~g~dG~-------- 556 (748)
|++.+ --|++++.+|.|.|.... +.+|. +..+-+..+..-|.++-..+.||+++....... .+.+-.
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg--~gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 117 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG--AAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDG 117 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC--ceEEEEecCccHHHHhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCC
Confidence 56654 889999999999998753 46654 566766666666666556789999987322110 000001
Q ss_pred CCCChhhhHHHhcCCCcE-EEeeCC-HHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 004509 557 THQPIEHLASFRAMPNIL-MLRPAD-GNETAGAYKVAVANRKRPSILALSRQK 607 (748)
Q Consensus 557 THq~~edia~lr~iPnl~-V~~Psd-~~e~~~~l~~a~~~~~~P~~irl~r~~ 607 (748)
.+|.. ..+++.+--.. ++.|.+ +..+..+++.|+. ..+|+||-+|+.-
T Consensus 118 ~~q~~--~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP~Dv 167 (539)
T TIGR03393 118 DFRHF--YRMAAEVTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLPVDV 167 (539)
T ss_pred chHHH--HHHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 12211 23444332221 225666 7889999999996 4799999998753
No 305
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=64.83 E-value=28 Score=38.46 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=49.7
Q ss_pred ccEEEeehh--HHH-HHHHHHHHhhccCCCeEEEEecCCCccCCCCCCC-C----ChhhhHHHhcCCCcEEEeeCCHHHH
Q 004509 513 IPYCATFFV--FTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-Q----PIEHLASFRAMPNILMLRPADGNET 584 (748)
Q Consensus 513 ~Piv~~f~~--F~~-r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~TH-q----~~edia~lr~iPnl~V~~Psd~~e~ 584 (748)
+++++.+.+ |.. ..++.+...+..++||++++-+.+++++. +++ + .+.+.+---.+|+++|=- .|..++
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~--~~~~~~~~~d~a~~a~a~G~~~~~Vdg-~d~~av 234 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGM--AHHRSTSIPEIHKKAEAFGLPGIEVDG-MDVLAV 234 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeec--chhheeCCccHHHHHHhCCCCEEEEeC-CCHHHH
Confidence 566665544 322 12334555678899999999888865442 222 1 233344444678777633 344333
Q ss_pred ----HHHHHHHHHcCCCcEEEEE
Q 004509 585 ----AGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 585 ----~~~l~~a~~~~~~P~~irl 603 (748)
+.+++.+.. .++|++|-.
T Consensus 235 ~~a~~~A~~~ar~-~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQ-GDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 445555553 478999864
No 306
>PRK06163 hypothetical protein; Provisional
Probab=64.76 E-value=1.3e+02 Score=30.63 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=61.5
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCccEEEeehh--HHHHHHHHHHHh-hccCCCeEEEEecC-CCccCCCCCCCC
Q 004509 484 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFV--FTDYMRAAIRIS-ALCEAGVIYVMTHD-SIGLGEDGPTHQ 559 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~~--F~~r~~dqIr~~-a~~~~pVi~v~t~~-g~~~g~dG~THq 559 (748)
.|.+|+-.|- =...+..|.|.++... =+++++.-.+ |..-+ .-+... .+.++|+++++-.. +++. ..+..+.
T Consensus 49 ~~~~~~~~Gs-MG~glpaAiGaalA~p-~r~Vv~i~GDG~f~m~~-~eL~Ta~~~~~lpi~ivV~NN~~yg~-~~~~~~~ 124 (202)
T PRK06163 49 RPQNFYMLGS-MGLAFPIALGVALAQP-KRRVIALEGDGSLLMQL-GALGTIAALAPKNLTIIVMDNGVYQI-TGGQPTL 124 (202)
T ss_pred CCCCeEeecc-cccHHHHHHHHHHhCC-CCeEEEEEcchHHHHHH-HHHHHHHHhcCCCeEEEEEcCCchhh-cCCccCC
Confidence 4666663221 1112235666665432 2667766444 43322 113333 35577877666555 4432 1111111
Q ss_pred --ChhhhH-HHhcCCCcE-EEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004509 560 --PIEHLA-SFRAMPNIL-MLRPADGNETAGAYKVAVANRKRPSILALS 604 (748)
Q Consensus 560 --~~edia-~lr~iPnl~-V~~Psd~~e~~~~l~~a~~~~~~P~~irl~ 604 (748)
..-|.+ +.+++ |+. -+.-.+..|+..+|+.+++ .++|++|-+.
T Consensus 125 ~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV~ 171 (202)
T PRK06163 125 TSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSFIAVR 171 (202)
T ss_pred CCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 112333 33333 565 5667899999999999996 6999998663
No 307
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=60.81 E-value=50 Score=38.99 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=75.0
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCccEEE--eehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCC-CCCCCh
Q 004509 485 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG-PTHQPI 561 (748)
Q Consensus 485 p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~--~f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG-~THq~~ 561 (748)
.=|++.+ --||..+.+|.|+|..-+ +|=|+ +-.+=+.....-|.+.-+...||+++... .....-| ..+|.+
T Consensus 39 ~i~~I~~-RHEq~Aa~mAdgyar~TG--kpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGq--v~~~~~g~~afQe~ 113 (550)
T COG0028 39 GIRHILV-RHEQGAAFAADGYARATG--KPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQ--VPTSLIGTDAFQEV 113 (550)
T ss_pred CCcEEEe-ccHHHHHHHHHHHHHHcC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCC--ccccccCcchhhhc
Confidence 4567765 789999999999997443 56554 34444444555555555668999988632 2221222 246777
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004509 562 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 606 (748)
Q Consensus 562 edia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~irl~r~ 606 (748)
...++++.+-.. .+...+++|+-.+++.|++ ...||++|-+|+.
T Consensus 114 D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 114 DQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred chhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 777788766543 3455666777777666653 3568999999874
No 308
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=59.42 E-value=90 Score=30.95 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=57.0
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCccEEEeeh--hHHHHHHHHHHHhhccC-CCeEEE-EecCCCccCCCCCCCC
Q 004509 484 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFF--VFTDYMRAAIRISALCE-AGVIYV-MTHDSIGLGEDGPTHQ 559 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA~~G~~~~Piv~~f~--~F~~r~~dqIr~~a~~~-~pVi~v-~t~~g~~~g~dG~THq 559 (748)
.|.+++..|.- ...+..|.|+++... ++++++.. .|..- ...+...+..+ .|++++ +...+++. .+..+.
T Consensus 34 ~~~~~~~~g~m-G~~lp~AiGaala~~--~~vv~i~GDG~f~m~-~~el~ta~~~~~~~l~vvV~NN~~~~~--~~~~~~ 107 (179)
T cd03372 34 RPLNFYMLGSM-GLASSIGLGLALAQP--RKVIVIDGDGSLLMN-LGALATIAAEKPKNLIIVVLDNGAYGS--TGNQPT 107 (179)
T ss_pred cccccccccch-hhHHHHHHHHHhcCC--CcEEEEECCcHHHhC-HHHHHHHHHcCCCCEEEEEEcCccccc--cCCCCC
Confidence 46777643221 122246777777653 66776544 45321 12233333344 455555 54444442 222211
Q ss_pred C---hhhhH-HHhcCCCcEEEeeC-CHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 560 P---IEHLA-SFRAMPNILMLRPA-DGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 560 ~---~edia-~lr~iPnl~V~~Ps-d~~e~~~~l~~a~~~~~~P~~irl 603 (748)
. .-|.+ +.+++ |+..+... +.+|+..+++.+. ++|.+|-.
T Consensus 108 ~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 108 HAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 1 11222 23332 55555666 9999999999887 68998764
No 309
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=59.23 E-value=60 Score=36.40 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 283 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~ 283 (748)
++..|+|.++| ..++++.+.=+++. ...|.+.+++-..+|-++++++.-+-+..-++.....
T Consensus 59 A~~~a~GAs~a----------------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~ 120 (375)
T PRK09627 59 GISVALGASMS----------------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQG 120 (375)
T ss_pred HHHHHHHHHhh----------------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchH
Confidence 55667777776 34688888777777 8899999999999954444443323333223322222
Q ss_pred ccHHHHHh---hCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEeee
Q 004509 284 ENVDKRFE---GLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTI 333 (748)
Q Consensus 284 ~~~~~~~~---a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T~k 333 (748)
+-...++. .|+|-++.+ .|+++..+...+|.+ .-.-|+++...+..
T Consensus 121 D~~~~~~~~hgd~~~ivl~p----~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~l 172 (375)
T PRK09627 121 DVNQAKNPTHGDFKSIALAP----GSLEEAYTETVRAFNLAERFMTPVFLLLDETV 172 (375)
T ss_pred HHHHHhcCCCCCcCcEEEeC----CCHHHHHHHHHHHHHHHHHHcCceEEecchHH
Confidence 22333444 357776666 377766555544433 24679998776644
No 310
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=57.31 E-value=35 Score=36.95 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=61.8
Q ss_pred HHHHHHHHh----cCCCCccEE-EeehhHHH---HHHHHHHHhhccCCCeEEEEecCCCccCCC---CCCCCChhhhHHH
Q 004509 499 GAICNGIAL----HSPGLIPYC-ATFFVFTD---YMRAAIRISALCEAGVIYVMTHDSIGLGED---GPTHQPIEHLASF 567 (748)
Q Consensus 499 vg~AaGlA~----~G~~~~Piv-~~f~~F~~---r~~dqIr~~a~~~~pVi~v~t~~g~~~g~d---G~THq~~edia~l 567 (748)
+.+++|+|+ .|. ..++ +.|.+=.. ..++.+..+++.++||+|++.+-+++.+.. ..+-..+.+.+..
T Consensus 107 ~p~a~G~A~a~k~~~~--~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~ 184 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGK--DGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKG 184 (300)
T ss_dssp HHHHHHHHHHHHHTTS--SEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGG
T ss_pred CccccchhHhhhhcCC--ceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhc
Confidence 445555553 453 3333 33444332 345667777899999999999888775321 1111235565666
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEE
Q 004509 568 RAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILAL 603 (748)
Q Consensus 568 r~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~irl 603 (748)
-.||+++| -=.|..++..+++.|+++ -++|++|-+
T Consensus 185 ~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 185 YGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp TTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred cCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 67887775 557777777777777743 478999864
No 311
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=53.66 E-value=57 Score=38.70 Aligned_cols=77 Identities=29% Similarity=0.334 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCCcEEEEEECCCCc--ccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCC
Q 004509 248 ANEASSLAGHLGLGKLIAFYDDNHIS--IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKP 324 (748)
Q Consensus 248 ~~Eal~~A~~~~L~~li~Ivd~N~~~--i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P 324 (748)
..-|+.+++..++ |+++|+-...++ -||||.. ..+.+ ..+++. |+.++++. |-.+...|.+.|.++.++|
T Consensus 441 ~r~AiRlaALm~l-~~~~V~THDSIgvGEDGPTHq-PiEqL-a~LRaiPN~~V~RPa----D~~Et~~aw~~Al~~~~gP 513 (663)
T COG0021 441 ARPAVRLAALMGL-PVIYVFTHDSIGVGEDGPTHQ-PVEQL-ASLRAIPNLSVIRPA----DANETAAAWKYALERKDGP 513 (663)
T ss_pred hhHHHHHHHhcCC-CeEEEEecCceecCCCCCCCC-cHHHH-HHhhccCCceeEecC----ChHHHHHHHHHHHhcCCCC
Confidence 4458999999999 788888776554 5666642 22333 346664 99999994 5556778888888766899
Q ss_pred EEEEEEe
Q 004509 325 TLIRVTT 331 (748)
Q Consensus 325 ~vI~~~T 331 (748)
++|...-
T Consensus 514 t~LiltR 520 (663)
T COG0021 514 TALILTR 520 (663)
T ss_pred eEEEEec
Confidence 9996653
No 312
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=53.58 E-value=1.2e+02 Score=34.32 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccc-cc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AF 282 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~-~~ 282 (748)
++..|+|.++| ..++++.+.=+++. ...|.+..|+-.++ |+++++ -|+-.- ++... ..
T Consensus 61 A~~~aiGAs~a----------------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~l-PiVi~~-~~R~~p-~~~~~~~~ 119 (390)
T PRK08366 61 AMAACIGASAA----------------GARAFTATSAQGLA--LMHEMLHWAAGARL-PIVMVD-VNRAMA-PPWSVWDD 119 (390)
T ss_pred HHHHHHHHHhh----------------CCCeEeeeCcccHH--HHhhHHHHHHhcCC-CEEEEE-eccCCC-CCCCCcch
Confidence 56777888876 35688888888888 89999999999999 444433 333211 21111 11
Q ss_pred cccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEe
Q 004509 283 TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTT 331 (748)
Q Consensus 283 ~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~---~~~~P~vI~~~T 331 (748)
..|+. ..+.-||-++.. .|+++.++...+|.+ .-.-|+++-..+
T Consensus 120 q~D~~-~~~d~g~i~~~~----~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg 166 (390)
T PRK08366 120 QTDSL-AQRDTGWMQFYA----ENNQEVYDGVLMAFKVAETVNLPAMVVESA 166 (390)
T ss_pred hhHHH-HHhhcCEEEEeC----CCHHHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 23333 223348866666 377665554444433 256799886654
No 313
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=52.31 E-value=36 Score=38.98 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCCccccccchHHHHHHHHHHH-hcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCC
Q 004509 484 PEERNVRFGVREHGMGAICNGIA-LHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP 560 (748)
Q Consensus 484 ~p~R~id~GIaE~~~vg~AaGlA-~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~ 560 (748)
..=|||++ =.||+++=.|..++ +.| +|-++. =.+=+.-+..-+.|+-.+.-|+++++..+.-..-.-|. -|-
T Consensus 50 lGIk~I~~-RnEqaA~yAA~A~gyLt~---kpGV~lVvsGPGl~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGa-fQe 124 (571)
T KOG1185|consen 50 LGIKFIGT-RNEQAAVYAASAYGYLTG---KPGVLLVVSGPGLTHALAGVANAQMNCWPLLLIGGSASTLLENRGA-FQE 124 (571)
T ss_pred cCCeEeec-ccHHHHHHHHHHhhhhcC---CCeEEEEecCChHHHHHHHhhhhhhccCcEEEEecccchhhhcccc-ccc
Confidence 45677776 67898887776666 466 566653 23334444444555445566888886222111111232 355
Q ss_pred hhhhHHHhcCCCcEEEeeCCHHHH----HHHHHHHHHcCCCcEEEEEcCC
Q 004509 561 IEHLASFRAMPNILMLRPADGNET----AGAYKVAVANRKRPSILALSRQ 606 (748)
Q Consensus 561 ~edia~lr~iPnl~V~~Psd~~e~----~~~l~~a~~~~~~P~~irl~r~ 606 (748)
+.++.++|..=. -+..|.+..+. +.+++.|+.-++||+|+-+|-.
T Consensus 125 ~dQvel~rp~~K-~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 125 LDQVELFRPLCK-FVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred ccHHhhhhhhhh-hccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 777777774332 24567775555 4455555544789999987654
No 314
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=51.68 E-value=80 Score=31.39 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=62.1
Q ss_pred CCCCcccccc--chHHHHHHHHHHHhcCCCCccEEEe--ehhHHHHHHHHHHHhhccCCCeEEEEecCCC-ccC---C-C
Q 004509 484 PEERNVRFGV--REHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLG---E-D 554 (748)
Q Consensus 484 ~p~R~id~GI--aE~~~vg~AaGlA~~G~~~~Piv~~--f~~F~~r~~dqIr~~a~~~~pVi~v~t~~g~-~~g---~-d 554 (748)
.|.+++..+- +=...++.|.|.++.-. -++++.. -..|..-+ .-+......++|+++++...+. +.- . .
T Consensus 39 ~~~~~~~~~~~g~mG~~l~~aiGaala~~-~~~vv~i~GDG~f~~~~-~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~ 116 (183)
T cd02005 39 KGTRFISQPLWGSIGYSVPAALGAALAAP-DRRVILLVGDGSFQMTV-QELSTMIRYGLNPIIFLINNDGYTIERAIHGP 116 (183)
T ss_pred CCCEEEeccchhhHhhhHHHHHHHHHhCC-CCeEEEEECCchhhccH-HHHHHHHHhCCCCEEEEEECCCcEEEEEeccC
Confidence 4677776421 11112344555554432 2566654 44564322 2244445556776666655443 320 0 1
Q ss_pred CCCCCCh--hhhH-HHhcC---CCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004509 555 GPTHQPI--EHLA-SFRAM---PNILMLRPADGNETAGAYKVAVANRKRPSILAL 603 (748)
Q Consensus 555 G~THq~~--edia-~lr~i---Pnl~V~~Psd~~e~~~~l~~a~~~~~~P~~irl 603 (748)
+..+... .|.. +..++ |++..+...+..|+..+++.++++.++|++|-+
T Consensus 117 ~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 117 EASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred CcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1112111 2322 33333 236777789999999999999963489998865
No 315
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.22 E-value=78 Score=28.99 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEE-ccCCCCHHHHHHHHHHHHhcCCCCE
Q 004509 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-KNGNTGYDDIRAAIKEAKAVTDKPT 325 (748)
Q Consensus 247 ~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v-~dG~~D~~~l~~al~~a~~~~~~P~ 325 (748)
..-|-+..++..|. -.|| ||+-.-..+ +.....++.+.+++.|+.++.+ +++..--.+-.++|.++.+...+|+
T Consensus 15 ~~~~d~~~la~~Gf--ktVI--nlRpd~E~~-~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pv 89 (110)
T PF04273_consen 15 PSPEDLAQLAAQGF--KTVI--NLRPDGEEP-GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPV 89 (110)
T ss_dssp --HHHHHHHHHCT----EEE--E-S-TTSTT-T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSE
T ss_pred CCHHHHHHHHHCCC--cEEE--ECCCCCCCC-CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 34556777777775 3333 232111111 1113345778899999888753 2333122455566667766568899
Q ss_pred EEEEEee
Q 004509 326 LIRVTTT 332 (748)
Q Consensus 326 vI~~~T~ 332 (748)
+++|+|-
T Consensus 90 l~hC~sG 96 (110)
T PF04273_consen 90 LAHCRSG 96 (110)
T ss_dssp EEE-SCS
T ss_pred EEECCCC
Confidence 9999974
No 316
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=50.32 E-value=98 Score=34.55 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=44.9
Q ss_pred HHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCCChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHc--CCCcEEE
Q 004509 525 YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVAN--RKRPSIL 601 (748)
Q Consensus 525 r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq~~edia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~--~~~P~~i 601 (748)
..++.+...+..++||++++...+++.+.--.-.....+++ ....+|+++| -=-|..++..+++.|++. .++|++|
T Consensus 176 ~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lI 254 (362)
T PLN02269 176 QLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVL 254 (362)
T ss_pred HHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 35666767788999999999887765432101112222231 1135787766 334444555555555431 2789999
Q ss_pred EE
Q 004509 602 AL 603 (748)
Q Consensus 602 rl 603 (748)
-.
T Consensus 255 e~ 256 (362)
T PLN02269 255 EM 256 (362)
T ss_pred EE
Confidence 75
No 317
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=48.14 E-value=1e+02 Score=33.11 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=49.7
Q ss_pred ccEEEeeh--hHHHH-HHHHHHHhhccCCCeEEEEecCCCccCCCCCCCC--ChhhhHHHh---cCCCcEEEeeCCHHHH
Q 004509 513 IPYCATFF--VFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLASFR---AMPNILMLRPADGNET 584 (748)
Q Consensus 513 ~Piv~~f~--~F~~r-~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq--~~edia~lr---~iPnl~V~~Psd~~e~ 584 (748)
+++++++. .|.+- .++-+...+..++||++++.+.+++.. .++.. +..|++-+. .+|++.| .=.|..++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~--~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAIS--TPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeecc--CCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 44554444 35432 234566667889999999988876432 22211 123333332 4555443 22356677
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 004509 585 AGAYKVAVA---NRKRPSILAL 603 (748)
Q Consensus 585 ~~~l~~a~~---~~~~P~~irl 603 (748)
...++.|++ ..++|++|-+
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 777776663 2478999865
No 318
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=45.58 E-value=86 Score=35.87 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=47.0
Q ss_pred ccEEEeehh--HHH-HHHHHHHHhhccCCCeEEEEecCCCccCC--CCCCCC-ChhhhHHHhcCCCcEEEeeCCHHHHH-
Q 004509 513 IPYCATFFV--FTD-YMRAAIRISALCEAGVIYVMTHDSIGLGE--DGPTHQ-PIEHLASFRAMPNILMLRPADGNETA- 585 (748)
Q Consensus 513 ~Piv~~f~~--F~~-r~~dqIr~~a~~~~pVi~v~t~~g~~~g~--dG~THq-~~edia~lr~iPnl~V~~Psd~~e~~- 585 (748)
.++++.+.+ |.. -.++.+...+..++||+|++-..+++.|. .-.|.. .+...+---.+|++.| .=.|..++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~ 302 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVRE 302 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHH
Confidence 455555544 322 23555666788999999999877754332 000111 1222333335666654 223333333
Q ss_pred ---HHHHHHHHcCCCcEEEEE
Q 004509 586 ---GAYKVAVANRKRPSILAL 603 (748)
Q Consensus 586 ---~~l~~a~~~~~~P~~irl 603 (748)
.+++.+.+ .++|++|-+
T Consensus 303 a~~~A~~~Ar~-g~gP~LIe~ 322 (433)
T PLN02374 303 VAKEAIERARR-GEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHH-cCCCEEEEE
Confidence 44555553 478998864
No 319
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=44.30 E-value=1.2e+02 Score=33.04 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=50.8
Q ss_pred ccEEEeehh--HHH-HHHHHHHHhhccCCCeEEEEecCCCccCCCCCCC--C---ChhhhHHHhcCCCcEEEeeCCHHHH
Q 004509 513 IPYCATFFV--FTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--Q---PIEHLASFRAMPNILMLRPADGNET 584 (748)
Q Consensus 513 ~Piv~~f~~--F~~-r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~TH--q---~~edia~lr~iPnl~V~~Psd~~e~ 584 (748)
+++++++.+ |.+ ..++.+...++.++||++++-..+++.. .++. . .+.+++---.+|+++| .=.|..++
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s--~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMG--TSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcccc--CCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 455555444 543 2234466667889999999988876532 2211 1 2334444446777654 33355565
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 004509 585 AGAYKVAVA---NRKRPSILAL 603 (748)
Q Consensus 585 ~~~l~~a~~---~~~~P~~irl 603 (748)
..+++.|++ ..++|++|-+
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 556665553 3478999865
No 320
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.27 E-value=1e+02 Score=26.11 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=38.8
Q ss_pred CCEEEEEeCh-hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccc
Q 004509 635 PDVILIGTGS-ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 699 (748)
Q Consensus 635 ~dvtlva~G~-~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~ 699 (748)
.++.|+..+. ....|++.+..|++.|+++++ |.+. +.+..+... ..+.|.+.++++.+.
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~----a~~~g~~~~iiig~~ 61 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIRE----AQLQKIPYILVVGDK 61 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHH----HHHcCCCEEEEECcc
Confidence 3677777765 457999999999999999977 4444 456554321 123455655666644
No 321
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=40.84 E-value=94 Score=26.79 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=39.0
Q ss_pred CEEEEEeCh----hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcc
Q 004509 636 DVILIGTGS----ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEA 698 (748)
Q Consensus 636 dvtlva~G~----~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~ 698 (748)
+|.|+..|. ....|.+.++.|.+.|+.+.+-+ .-..+..+... ....|.+.++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~----a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIKY----ADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHH----HHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHH----HhhcCCeEEEEECc
Confidence 477888888 44789999999999999998887 44556654322 22245566566543
No 322
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=40.71 E-value=1.7e+02 Score=33.00 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc-c
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-F 282 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~-~ 282 (748)
+++.++|.+++ ..++++.+.=.++. ...|.+..|+-.++ |+++++ -|+ ++..+.... .
T Consensus 62 A~~~~~GAs~a----------------GaRa~TaTS~~Gl~--lm~E~l~~aag~~l-P~V~vv-~~R-~~~~p~~i~~d 120 (394)
T PRK08367 62 AISACVGASAA----------------GVRTFTATASQGLA--LMHEVLFIAAGMRL-PIVMAI-GNR-ALSAPINIWND 120 (394)
T ss_pred HHHHHHHHHhh----------------CCCeEeeeccchHH--HHhhHHHHHHHccC-CEEEEE-CCC-CCCCCCCcCcc
Confidence 56677777776 34677777777777 89999999999999 555554 222 232232221 1
Q ss_pred cccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhc-----CCCCEEEEEEee
Q 004509 283 TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-----TDKPTLIRVTTT 332 (748)
Q Consensus 283 ~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~-----~~~P~vI~~~T~ 332 (748)
..|+. --+..||-.+.. .|+++..+-..+|.+. -.-|+++-..+.
T Consensus 121 ~~D~~-~~rd~g~~~~~a----~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 121 WQDTI-SQRDTGWMQFYA----ENNQEALDLILIAFKVAEDERVLLPAMVGFDAF 170 (394)
T ss_pred hHHHH-hccccCeEEEeC----CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechh
Confidence 22322 345678988776 3777655544444331 225988876654
No 323
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=39.67 E-value=84 Score=29.62 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=44.9
Q ss_pred CcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHHH
Q 004509 231 DHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDI 310 (748)
Q Consensus 231 ~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l 310 (748)
.++.++++.||.-+ +...+.+..+...+. ++.+|.-.... .....+.+.++.-|..++.+ + . +.++|
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i-~i~~v~~~~~~--------~~~~~l~~la~~tgG~~~~~-~-~-~~~~l 165 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGI-TIYTVGIGSDS--------DANEFLQRLAEATGGRYFHV-D-N-DPEDL 165 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTE-EEEEEEES-TT---------EHHHHHHHHHHTEEEEEEE---S-SSHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCC-eEEEEEECCCc--------cHHHHHHHHHHhcCCEEEEe-c-C-CHHHH
Confidence 56789999999766 455677777776665 33333211110 01235667777888899887 3 2 56888
Q ss_pred HHHHHH
Q 004509 311 RAAIKE 316 (748)
Q Consensus 311 ~~al~~ 316 (748)
.++|++
T Consensus 166 ~~~~~~ 171 (172)
T PF13519_consen 166 DDAFQQ 171 (172)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888875
No 324
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=39.17 E-value=2e+02 Score=32.55 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccccc
Q 004509 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 283 (748)
Q Consensus 204 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~ 283 (748)
++..++|.+++ ..++++.+.=.++. ...|.+..|+-.++| +++++-+....-.-++. ...
T Consensus 68 A~~~~~GAs~a----------------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P-~V~~~~~R~~~~~~~i~-~d~ 127 (407)
T PRK09622 68 AMSACVGAAAA----------------GGRVATATSSQGLA--LMVEVLYQASGMRLP-IVLNLVNRALAAPLNVN-GDH 127 (407)
T ss_pred HHHHHHHHHhh----------------CcCEEeecCcchHH--HHhhHHHHHHHhhCC-EEEEEeccccCCCcCCC-chH
Confidence 56677788876 34678887777777 899999999999994 44443333322111111 112
Q ss_pred ccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhc---C--CCCEEEEEEee
Q 004509 284 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV---T--DKPTLIRVTTT 332 (748)
Q Consensus 284 ~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~---~--~~P~vI~~~T~ 332 (748)
.|+.. .+.-||-++.. .|+++.++...+|.+. . .-|+++-..+.
T Consensus 128 ~D~~~-~r~~g~ivl~p----~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~ 176 (407)
T PRK09622 128 SDMYL-SRDSGWISLCT----CNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGF 176 (407)
T ss_pred HHHHH-HhcCCeEEEeC----CCHHHHHHHHHHHHHHHHHhccCCCEEEEechh
Confidence 23332 34558888877 4887766665555441 2 67888866655
No 325
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=38.53 E-value=2.2e+02 Score=33.51 Aligned_cols=100 Identities=24% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHH-------HhhCCcEEEEE--
Q 004509 230 VDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKR-------FEGLGWHVIWV-- 300 (748)
Q Consensus 230 ~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~-------~~a~G~~~~~v-- 300 (748)
.|=.|.++-+|-+++. ++.||+..|...+. |+++-+|- ||.+- ...+.+.+- .+.+|-++..|
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~V-piVvAinK----iDkp~--a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANV-PIVVAINK----IDKPG--ANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCC-CEEEEEec----cCCCC--CCHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 4566777777777763 69999999999997 55555442 33331 111222222 34555444322
Q ss_pred --ccCCCCHHHHHHHHHHH---Hh---cCCCC---EEEEEEeeeccCCC
Q 004509 301 --KNGNTGYDDIRAAIKEA---KA---VTDKP---TLIRVTTTIGFGSP 338 (748)
Q Consensus 301 --~dG~~D~~~l~~al~~a---~~---~~~~P---~vI~~~T~kg~G~~ 338 (748)
.-|. |++.|.+|+-.- .+ ..++| .+||..+.||+|..
T Consensus 297 SAl~g~-nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 297 SALTGE-NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred ecccCC-ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccce
Confidence 1477 999998887422 22 23456 49999999999964
No 326
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=35.14 E-value=3.4e+02 Score=27.48 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=48.0
Q ss_pred CcEEEEEEcchhcchhh--HHH-HHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCH
Q 004509 231 DHYTYVILGDGCQMEGI--ANE-ASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGY 307 (748)
Q Consensus 231 ~~~v~~iiGDG~~~eG~--~~E-al~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~ 307 (748)
+.+|+.++-||..+.|. -.+ |..+|...++...+|-+-.. ..+.+...++.=|-+++++ .|.
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~-----------d~~~l~~iA~~tgG~~F~A----~d~ 175 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL-----------SDEADQLQRELPAGKAFVC----MDT 175 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC-----------CHHHHHHHHhCCCCcEEEe----CCH
Confidence 57899999999976554 344 45778888874444433210 1223445566668899998 377
Q ss_pred HHHHHHHHHHHh
Q 004509 308 DDIRAAIKEAKA 319 (748)
Q Consensus 308 ~~l~~al~~a~~ 319 (748)
++|.+.+++...
T Consensus 176 ~~L~~iy~~I~~ 187 (191)
T cd01455 176 SELPHIMQQIFT 187 (191)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 327
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.03 E-value=1.4e+02 Score=27.41 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=38.7
Q ss_pred CCEEEEEeC--h-hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccc
Q 004509 635 PDVILIGTG--S-ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 699 (748)
Q Consensus 635 ~dvtlva~G--~-~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~ 699 (748)
.++.|+..+ . ....|++.++.|++.|+.+++-+ . +.+..+.. ...+.+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~--~sl~kqlk----~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S--GSIGRRYA----RQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C--CCHHHHHH----HhHhcCCCEEEEECcC
Confidence 578899988 5 45789999999999999998843 3 55555432 1223455555655543
No 328
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=34.25 E-value=1.8e+02 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=32.0
Q ss_pred CCCEEEEEeC----hhHHHHHHHHHHHHhCCCcEEEEecCC
Q 004509 634 KPDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 670 (748)
Q Consensus 634 g~dvtlva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 670 (748)
..+|+|++.| +....|.+|.+.|++.|+..+.+|+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3689999988 467889999999999999999999864
No 329
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=33.80 E-value=90 Score=34.18 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccCCCeEEEEecCCCccCCCCCCCC-Chhhh-HHHh--cCCCcEEEeeCCHHHHHHHHHHHHHc---CCC
Q 004509 525 YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ-PIEHL-ASFR--AMPNILMLRPADGNETAGAYKVAVAN---RKR 597 (748)
Q Consensus 525 r~~dqIr~~a~~~~pVi~v~t~~g~~~g~dG~THq-~~edi-a~lr--~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~ 597 (748)
..|+...+++++++|||||+-...+|. |.+|- +..+. -+.| -|||+.| ---|.--++.+.++|.+. -++
T Consensus 203 Q~fEa~NMA~LW~LP~IFvCENN~yGM---GTs~~Rasa~teyykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~G 278 (394)
T KOG0225|consen 203 QVFEAFNMAALWKLPVIFVCENNHYGM---GTSAERASASTEYYKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKG 278 (394)
T ss_pred hHHHHhhHHHHhCCCEEEEEccCCCcc---CcchhhhhcChHHHhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCC
Confidence 355555667899999999997777654 44442 22222 2333 5898775 222333344444444432 378
Q ss_pred cEEEEE
Q 004509 598 PSILAL 603 (748)
Q Consensus 598 P~~irl 603 (748)
|+++-+
T Consensus 279 PilmE~ 284 (394)
T KOG0225|consen 279 PILMEM 284 (394)
T ss_pred CEEEEE
Confidence 998854
No 330
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=32.82 E-value=36 Score=31.04 Aligned_cols=35 Identities=40% Similarity=0.619 Sum_probs=23.7
Q ss_pred CCCEEEEEeChhHH-HHHHHHHHHHhCCCcEEEEec
Q 004509 634 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSF 668 (748)
Q Consensus 634 g~dvtlva~G~~v~-~al~Aa~~L~~~Gi~v~VId~ 668 (748)
.+|+.||++|.... .--+..+.|++.||.+++-|-
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 68999999998542 234556778899999888863
No 331
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=32.48 E-value=4.1e+02 Score=31.63 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=54.0
Q ss_pred HHHHHHcCCCcEEEEEECCCC-cccccccccccccHHHHHhhC-CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004509 252 SSLAGHLGLGKLIAFYDDNHI-SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 329 (748)
Q Consensus 252 l~~A~~~~L~~li~Ivd~N~~-~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~ 329 (748)
+.-.+-++| |++|.+|..+. +.|++|... .-|+. +++.. |+.+... .|.++++..+..|....++|+.|.
T Consensus 401 iHDvaiqnL-PV~faIDRAGivG~DG~TH~G-~fDls-~l~~iPnmvi~aP----~de~el~~ml~ta~~~~~gP~AiR- 472 (627)
T COG1154 401 IHDVAIQNL-PVTFAIDRAGIVGADGPTHQG-LFDLS-FLRCIPNMVIMAP----RDEEELRQMLYTALAQDDGPVAIR- 472 (627)
T ss_pred HHHHHhccC-CeEEEEecCcccCCCCCcccc-HHHHH-HHhcCCCcEEecC----CCHHHHHHHHHHHHhcCCCCeEEE-
Confidence 345667788 89999997764 566666421 11332 34443 8888887 499999999999998455899984
Q ss_pred EeeeccCCCC
Q 004509 330 TTTIGFGSPN 339 (748)
Q Consensus 330 ~T~kg~G~~~ 339 (748)
-.||.|...
T Consensus 473 -yPrg~~~~~ 481 (627)
T COG1154 473 -YPRGNGVGV 481 (627)
T ss_pred -ecCCCCCCC
Confidence 456655543
No 332
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=32.44 E-value=4.2e+02 Score=29.86 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=32.0
Q ss_pred HHHHHHHHhhccCC-CeEEEEecCCCccCCCCCCCC---ChhhhH-HHhcCCCcEEEee
Q 004509 525 YMRAAIRISALCEA-GVIYVMTHDSIGLGEDGPTHQ---PIEHLA-SFRAMPNILMLRP 578 (748)
Q Consensus 525 r~~dqIr~~a~~~~-pVi~v~t~~g~~~g~dG~THq---~~edia-~lr~iPnl~V~~P 578 (748)
..|+.+...+..++ +++++....++ .-||+|-- ..++++ -|++. |+.|+.-
T Consensus 163 ~vwEA~~~Ag~~kL~NLivIvD~N~~--qidG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 163 ESLGAIGLAAREKLDNLIFVVNCNLQ--RLDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCC--ccCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 57788777766675 67777644444 45677653 355553 45555 8888864
No 333
>PRK10329 glutaredoxin-like protein; Provisional
Probab=31.29 E-value=1.8e+02 Score=24.88 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=37.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCc
Q 004509 637 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 704 (748)
Q Consensus 637 vtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~ 704 (748)
|+|.+. ...+.|..+-+.|++.||..+.+|+..-. +..+.+...-....|+ |++.+....||
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~~~----~~~~~~~~~g~~~vPv-v~i~~~~~~Gf 64 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDRVP----EAAETLRAQGFRQLPV-VIAGDLSWSGF 64 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCCCH----HHHHHHHHcCCCCcCE-EEECCEEEecC
Confidence 555543 44578888888999999999999998532 1111111111124564 66666555676
No 334
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=30.84 E-value=1.5e+02 Score=30.89 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=38.2
Q ss_pred cEEEEEECCCCcc-ccccc--ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHh
Q 004509 262 KLIAFYDDNHISI-DGDTE--IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 319 (748)
Q Consensus 262 ~li~Ivd~N~~~i-~~~~~--~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~ 319 (748)
-+.+|++|..|.- -.+-. ......+++.|+.+||++....| -+.+++.+++++..+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~n--lt~~~~~~~l~~f~~ 68 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNN--LTAEEILEELKEFAS 68 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCC--CCHHHHHHHHHHHHh
Confidence 4677777776643 11111 12345688999999999988744 367899999988764
No 335
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=30.67 E-value=1.9e+02 Score=32.94 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=52.5
Q ss_pred cEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCC-----
Q 004509 232 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTG----- 306 (748)
Q Consensus 232 ~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D----- 306 (748)
..+++..|=|.++ ..-++..|-..+. |+++|.=+-.....+ .+.....|..+.|+.+--...+|.+-. +
T Consensus 65 gv~~~t~GpG~~N---~l~gl~~A~~~~~-Pvl~i~g~~~~~~~~-~~~~q~~d~~~~~~~~tk~~~~v~~~~-~~~~~~ 138 (432)
T TIGR00173 65 VAVVCTSGTAVAN---LLPAVIEASYSGV-PLIVLTADRPPELRG-CGANQTIDQPGLFGSYVRWSLDLPLPE-ADEPLA 138 (432)
T ss_pred EEEEECCcchHhh---hhHHHHHhcccCC-cEEEEeCCCCHHHhC-CCCCcccchhhHHhhccceeeeCCCCC-ccccHH
Confidence 3455555777776 4556777878886 677775332211111 010111255667777643334453433 3
Q ss_pred --HHHHHHHHHHHHhcCCCCEEEEEEee
Q 004509 307 --YDDIRAAIKEAKAVTDKPTLIRVTTT 332 (748)
Q Consensus 307 --~~~l~~al~~a~~~~~~P~vI~~~T~ 332 (748)
...+.+|++.|.....||+.|.+...
T Consensus 139 ~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 139 YLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 24577777777653458999987643
No 336
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=30.11 E-value=3.3e+02 Score=30.44 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=59.0
Q ss_pred HhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccc
Q 004509 203 QGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF 282 (748)
Q Consensus 203 ~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~ 282 (748)
.+++.++|.+++.. +-.-..-|.|=. ...|++..|+-..+ |+++++-.......+..-...
T Consensus 58 ~a~s~v~GA~~aGa---------------r~~TaTSg~Gl~---Lm~E~l~~a~~~~~-P~Vi~~~~R~~ps~g~p~~~d 118 (365)
T COG0674 58 GAISAVIGASYAGA---------------RAFTATSGQGLL---LMAEALGLAAGTET-PLVIVVAQRPLPSTGLPIKGD 118 (365)
T ss_pred HHHHHHHHHHhhCc---------------ceEeecCCccHH---HHHHHHHHHHhccC-CeEEEEeccCcCCCccccccc
Confidence 46778888888643 223344455544 58999999999998 666665555444333311112
Q ss_pred cccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004509 283 TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 283 ~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~ 330 (748)
..|+.....+ ||..+...|-.+-++....|++.|.+ ..-|+++-..
T Consensus 119 q~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~-~~~Pvi~~~D 164 (365)
T COG0674 119 QSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEK-VLTPVIVLLD 164 (365)
T ss_pred HHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHH-hcCCEEEeec
Confidence 2344433333 99988772111112223444555554 4568776443
No 337
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=30.01 E-value=1.2e+02 Score=33.49 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=45.1
Q ss_pred HHHHHHHHhhccCCC-eEEEEecCCCccCCCCCCCCC-hhhh-HHHhcCCCcEEEeeC---CHHHHHHHHHHHHHcCCCc
Q 004509 525 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQP-IEHL-ASFRAMPNILMLRPA---DGNETAGAYKVAVANRKRP 598 (748)
Q Consensus 525 r~~dqIr~~a~~~~p-Vi~v~t~~g~~~g~dG~THq~-~edi-a~lr~iPnl~V~~Ps---d~~e~~~~l~~a~~~~~~P 598 (748)
.+++.+...+..++. ++++. |.=...-||.|--. .+|+ .-+++. |+.|+.-+ |..++..++..|-...+.|
T Consensus 159 ~~~EA~~~A~~~~L~nLi~i~--D~N~~q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 159 SVWEAASLAGHYKLDNLIVIY--DSNGIQIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHHHHHHHTT-TTEEEEE--EEESEETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-
T ss_pred hhHHHHHHHHHhCCCCEEEEE--ecCCcccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCC
Confidence 467777777667775 55555 33334557777521 3444 335555 89998874 5555666666666545889
Q ss_pred EEEEE
Q 004509 599 SILAL 603 (748)
Q Consensus 599 ~~irl 603 (748)
++|..
T Consensus 236 ~~Ii~ 240 (332)
T PF00456_consen 236 TVIIA 240 (332)
T ss_dssp EEEEE
T ss_pred ceeec
Confidence 99986
No 338
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=29.60 E-value=93 Score=30.55 Aligned_cols=44 Identities=27% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHH
Q 004509 635 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 678 (748)
Q Consensus 635 ~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~ 678 (748)
.=+.|++.|+.---++-+|+.|.++|+++.|+-+...+.+..+.
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~ 70 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDA 70 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHH
Confidence 34667888888889999999999999999996554444444443
No 339
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=29.41 E-value=1.3e+02 Score=35.18 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHhhC---CcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCCCCCC
Q 004509 287 DKRFEGL---GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKA 341 (748)
Q Consensus 287 ~~~~~a~---G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg~G~~~~~ 341 (748)
.++-+.+ |++++...-|. ++++...++-|++....|.+|++.--++-||..-+
T Consensus 140 ~ElI~~L~~~G~~yv~fKPGt--IeqI~svi~IAka~P~~pIilq~egGraGGHHSwe 195 (717)
T COG4981 140 VELIEELGDDGFPYVAFKPGT--IEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWE 195 (717)
T ss_pred HHHHHHHhhcCceeEEecCCc--HHHHHHHHHHHhcCCCCceEEEEecCccCCccchh
Confidence 3344444 99999886665 99999999999886678999998888887877554
No 340
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=29.37 E-value=2.1e+02 Score=23.32 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=39.2
Q ss_pred CEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEccccccCc
Q 004509 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 704 (748)
Q Consensus 636 dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~ 704 (748)
+|+|.+. +....|.+|.+.|++.||..+.+|+..-.+...+... ..-....|. |.+......|+
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~---~~g~~~vP~-v~i~~~~iGg~ 65 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEE---RTGSSVVPQ-IFFNEKLVGGL 65 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH---HhCCCCcCE-EEECCEEEeCH
Confidence 4666654 4456788898999999999999999875544333221 111133464 55555444444
No 341
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=29.10 E-value=2.5e+02 Score=22.70 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=38.5
Q ss_pred EEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccC-CCceEEEEccccccCcc
Q 004509 637 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA-AVSARVSIEAGSTFGWE 705 (748)
Q Consensus 637 vtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~-~~~~vv~vE~~~~~G~~ 705 (748)
|+|.+ -+..+.|.+|.+.|++.|+..+.+|+..-...-.+.. +..-.. ..|. |.++.....|+.
T Consensus 2 i~ly~-~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~---~~~~~~~~vP~-v~i~g~~igg~~ 66 (75)
T cd03418 2 VEIYT-KPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMI---NRSGGRRTVPQ-IFIGDVHIGGCD 66 (75)
T ss_pred EEEEe-CCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH---HHhCCCCccCE-EEECCEEEeChH
Confidence 44444 3556788899999999999999999976422211111 111111 4564 666665555553
No 342
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=29.03 E-value=3.8e+02 Score=27.75 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=51.1
Q ss_pred hHhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCccccccccc
Q 004509 202 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA 281 (748)
Q Consensus 202 G~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~ 281 (748)
|..++..+|+|.|.+.. +.+++||+=|-.-.. ..-++|..++.... +=||+-+
T Consensus 52 g~~~~ttiaLaaAAr~T------------gGR~vCIvp~~~~~~-~~~~~l~~~~~~~~--vEfvvg~------------ 104 (218)
T PF07279_consen 52 GGAISTTIALAAAARQT------------GGRHVCIVPDEQSLS-EYKKALGEAGLSDV--VEFVVGE------------ 104 (218)
T ss_pred CCchHhHHHHHHHHHhc------------CCeEEEEcCChhhHH-HHHHHHhhcccccc--ceEEecC------------
Confidence 45667788888888753 678899987754431 23333333332221 1222200
Q ss_pred ccccHHHHHhhCCcEEEEEccCCCCHHHHH-HHHHHHHhcCCCCEEEEEEe
Q 004509 282 FTENVDKRFEGLGWHVIWVKNGNTGYDDIR-AAIKEAKAVTDKPTLIRVTT 331 (748)
Q Consensus 282 ~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~-~al~~a~~~~~~P~vI~~~T 331 (748)
..+++...++ |.+.+-| |++ .++.. +.|+.++- ..+=.||.++-
T Consensus 105 ~~e~~~~~~~--~iDF~vV-Dc~--~~d~~~~vl~~~~~-~~~GaVVV~~N 149 (218)
T PF07279_consen 105 APEEVMPGLK--GIDFVVV-DCK--REDFAARVLRAAKL-SPRGAVVVCYN 149 (218)
T ss_pred CHHHHHhhcc--CCCEEEE-eCC--chhHHHHHHHHhcc-CCCceEEEEec
Confidence 1223444455 6666666 765 34444 77776654 33334555553
No 343
>PRK13683 hypothetical protein; Provisional
Probab=28.49 E-value=70 Score=27.92 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=31.5
Q ss_pred HhhCCcEEEEEccCCCCHHHHHHHHHHHHhcCCCCEEEEEEeeec
Q 004509 290 FEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 334 (748)
Q Consensus 290 ~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~~~~P~vI~~~T~kg 334 (748)
+..+-+.+.+= +-. |.+++++-+.+|.+ .+.|.++|..+.|-
T Consensus 10 ~sP~P~SVQRK-e~e-dA~alYq~I~~am~-sg~P~llELtCek~ 51 (87)
T PRK13683 10 YSPMPISVQRK-EAE-DAEALYQQIRQAMR-SGNPRLLELTCEKV 51 (87)
T ss_pred cCCcceEEEec-cHH-HHHHHHHHHHHHHh-cCCCcEEEEEecCc
Confidence 34445555553 433 88899999999997 78899999999874
No 344
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=28.24 E-value=2.4e+02 Score=24.95 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCCEEEEEeC----hhHHHHHHHHHHHHhCCCcEEEEecCC
Q 004509 634 KPDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 670 (748)
Q Consensus 634 g~dvtlva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 670 (748)
..+|+|++.| +....|.+|.+.|++.|+..+.+|+..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~ 51 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE 51 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999888 567889999999999999999999864
No 345
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=27.93 E-value=2.1e+02 Score=29.80 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=45.2
Q ss_pred cEEEEEECCCCccccccc--ccccccHHHHHhhCCcEEEEEccCCCCHHHHHHHHHHHHhc-C--CCCEEEEEEeeeccC
Q 004509 262 KLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-T--DKPTLIRVTTTIGFG 336 (748)
Q Consensus 262 ~li~Ivd~N~~~i~~~~~--~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~l~~al~~a~~~-~--~~P~vI~~~T~kg~G 336 (748)
-+.+|++|..|.-..+-. ......+.+.|+.+||++....| - +..++.+++++..+. . +.=+++.+ +-++|
T Consensus 9 g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~d-l-t~~em~~~l~~~~~~~~~~~~d~~v~~--~~sHG 84 (241)
T smart00115 9 GLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNN-L-TAEEMLEELKEFAERPEHSDSDSFVCV--LLSHG 84 (241)
T ss_pred cEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHHhccccCCCCEEEEE--EcCCC
Confidence 467788887774211111 12345688999999999998855 3 678999999887552 1 22344433 45666
Q ss_pred C
Q 004509 337 S 337 (748)
Q Consensus 337 ~ 337 (748)
.
T Consensus 85 ~ 85 (241)
T smart00115 85 E 85 (241)
T ss_pred C
Confidence 3
No 346
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.28 E-value=8.3e+02 Score=26.55 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=50.2
Q ss_pred CcEEEEEEcchhcchhhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCC-cEEEEEccCCCCHHH
Q 004509 231 DHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLG-WHVIWVKNGNTGYDD 309 (748)
Q Consensus 231 ~~~v~~iiGDG~~~eG~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G-~~~~~v~dG~~D~~~ 309 (748)
.+.++.++|-|+=- | -.=|+.+|.+. ..++++|-|..+.. +..+..+..| .++..+ |=. |.++
T Consensus 37 ~g~~vLITGgg~Gl-G-r~ialefa~rg---~~~vl~Din~~~~~---------etv~~~~~~g~~~~y~c-dis-~~ee 100 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-G-RLIALEFAKRG---AKLVLWDINKQGNE---------ETVKEIRKIGEAKAYTC-DIS-DREE 100 (300)
T ss_pred cCCEEEEeCCCchH-H-HHHHHHHHHhC---CeEEEEeccccchH---------HHHHHHHhcCceeEEEe-cCC-CHHH
Confidence 45688888877543 1 22234555544 36777777754432 2334444334 556666 766 9999
Q ss_pred HHHHHHHHHhcCCCCEEEEEE
Q 004509 310 IRAAIKEAKAVTDKPTLIRVT 330 (748)
Q Consensus 310 l~~al~~a~~~~~~P~vI~~~ 330 (748)
+++..++.++ .-||+-|.+.
T Consensus 101 i~~~a~~Vk~-e~G~V~ILVN 120 (300)
T KOG1201|consen 101 IYRLAKKVKK-EVGDVDILVN 120 (300)
T ss_pred HHHHHHHHHH-hcCCceEEEe
Confidence 9999988887 4456555444
No 347
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=26.71 E-value=4.8e+02 Score=25.78 Aligned_cols=71 Identities=6% Similarity=-0.013 Sum_probs=45.3
Q ss_pred CcEEEEEEcchhcch-hhHHHHHHHHHHcCCCcEEEEEECCCCcccccccccccccHHHHHhhCCcEEEEEccCCCCHHH
Q 004509 231 DHYTYVILGDGCQME-GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDD 309 (748)
Q Consensus 231 ~~~v~~iiGDG~~~e-G~~~Eal~~A~~~~L~~li~Ivd~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~D~~~ 309 (748)
+++++++++||+-.. +...+.+..+...+....++=+. .. ..-+.+.+++-|-.++.+ .|.++
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG-------~~-----~~~L~~ia~~tgG~~~~~----~~~~~ 170 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLS-------AE-----MHICKEICKATNGTYKVI----LDETH 170 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEec-------hH-----HHHHHHHHHHhCCeeEee----CCHHH
Confidence 456888899987543 33445666777777632222221 11 123677888889899988 47888
Q ss_pred HHHHHHHH
Q 004509 310 IRAAIKEA 317 (748)
Q Consensus 310 l~~al~~a 317 (748)
+.+.+.++
T Consensus 171 l~~~~~~~ 178 (183)
T cd01453 171 LKELLLEH 178 (183)
T ss_pred HHHHHHhc
Confidence 88887764
No 348
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.11 E-value=1.1e+02 Score=25.68 Aligned_cols=40 Identities=33% Similarity=0.437 Sum_probs=28.9
Q ss_pred EEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCCh--hhHHHHHH
Q 004509 637 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSW--ELFDEQSD 679 (748)
Q Consensus 637 vtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l--~pld~~~~ 679 (748)
++||+.|. .+++.|..|.+.|.++.+|+.... .-+|.+..
T Consensus 2 vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~ 43 (80)
T PF00070_consen 2 VVVIGGGF---IGIELAEALAELGKEVTLIERSDRLLPGFDPDAA 43 (80)
T ss_dssp EEEESSSH---HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHH
T ss_pred EEEECcCH---HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHH
Confidence 67887776 567788889899999999987652 22555543
No 349
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.96 E-value=1.3e+02 Score=24.93 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=26.9
Q ss_pred CCEEEEEeCh-hHHHHHHHHHHHHhCCCcEEEEec
Q 004509 635 PDVILIGTGS-ELEIAAKAAEELRKGGKAVRVVSF 668 (748)
Q Consensus 635 ~dvtlva~G~-~v~~al~Aa~~L~~~Gi~v~VId~ 668 (748)
.+|.|+..+. ....|++.+..|++.|+.+++...
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 3678888777 457899999999999998877543
No 350
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.53 E-value=59 Score=30.03 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=26.2
Q ss_pred CCCEEEEEeChhH-HHHHHHHHHHHhCCCcEEEEec
Q 004509 634 KPDVILIGTGSEL-EIAAKAAEELRKGGKAVRVVSF 668 (748)
Q Consensus 634 g~dvtlva~G~~v-~~al~Aa~~L~~~Gi~v~VId~ 668 (748)
..++.||++|... ..--+..+.|++.||.++|.|-
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 5789999999843 2333455678899999998873
No 351
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=22.80 E-value=1.3e+02 Score=29.44 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=28.8
Q ss_pred CCCEEEEEeChhHHHHHHHHHHHHhCCCcEEEE
Q 004509 634 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVV 666 (748)
Q Consensus 634 g~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VI 666 (748)
+.++.++++|-.....+..|+.|++.|.+|.+=
T Consensus 57 ~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~q 89 (155)
T PF12500_consen 57 GERVLVLGTGEFMYLPLLLAEELEQAGADVRYQ 89 (155)
T ss_pred CCcEEEEccchHHHHHHHHHHHHHhcCCceEEe
Confidence 578999999999999999999999999665554
No 352
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=22.62 E-value=2.8e+02 Score=23.36 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=36.6
Q ss_pred CEEEEEeCh----hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHHhhhhccCCCceEEEEcc
Q 004509 636 DVILIGTGS----ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEA 698 (748)
Q Consensus 636 dvtlva~G~----~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~~v~~~~~~~vv~vE~ 698 (748)
++.|+..+. ....|++.+..|++.|+.+++-+ .. +.+..+... ..+.|.+.++++.+
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~----a~~~g~~~~iiig~ 63 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFRE----ADLRGVPFAVVVGE 63 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHH----HHhCCCCEEEEECC
Confidence 577777764 45789999999999999888744 22 455544221 12345455566654
No 353
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=22.61 E-value=2.7e+02 Score=27.68 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCC---CCccccccceeEEecCC-----CCCCCCEEEEEeChhHHHHHHHH
Q 004509 582 NETAGAYKVAVANRKRPSILALSRQKLPHLAG---TSIDGVEKGAYIISDNS-----SGNKPDVILIGTGSELEIAAKAA 653 (748)
Q Consensus 582 ~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~---~~~~~~~~G~~~v~~~~-----~~~g~dvtlva~G~~v~~al~Aa 653 (748)
+|++.+|.+|+- .+|-+||.=.. .+.-+.. .+.++++. ..++..+. -..-..|.|++-.+.-.+|.+.|
T Consensus 25 edaARlLAQA~v-geG~IYi~G~~-Em~~v~~~Al~g~E~l~~-~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 25 EDAARLLAQAIV-GEGTIYIYGFG-EMEAVEAEALYGAEPLPS-AKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHH-TT--EEEEE-G-GGGGGHHHHHCSTT--TT-EEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHh-cCCEEEEEecC-hHHHHHHHHHcCCCCCch-hhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 578889999986 58999986332 2211110 01122221 11111110 00124688999888888999999
Q ss_pred HHHHhCCCcEEEEe
Q 004509 654 EELRKGGKAVRVVS 667 (748)
Q Consensus 654 ~~L~~~Gi~v~VId 667 (748)
++|.++|+.+-+|+
T Consensus 102 ~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 102 KQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHT--EEEEE
T ss_pred HHHHHCCCCEEEEE
Confidence 99999999999998
No 354
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=22.40 E-value=2.6e+02 Score=27.22 Aligned_cols=30 Identities=37% Similarity=0.396 Sum_probs=21.5
Q ss_pred CEEEEEeC-hhHHHHHHHHHHHHhCCCcEEE
Q 004509 636 DVILIGTG-SELEIAAKAAEELRKGGKAVRV 665 (748)
Q Consensus 636 dvtlva~G-~~v~~al~Aa~~L~~~Gi~v~V 665 (748)
+|.||.-| +-...+.++++.|++.||..++
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~ 32 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV 32 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45555433 4778999999999999987654
No 355
>PF03180 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR004872 This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to IPR001638 from INTERPRO which are solute binding proteins.; PDB: 4EF2_A 4EF1_B 3GXA_C 3IR1_D 3TQW_A 3K2D_B 3UP9_A 1XS5_A 1P99_A.
Probab=22.11 E-value=1.8e+02 Score=30.44 Aligned_cols=92 Identities=25% Similarity=0.329 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHH------------HHHhhhhccC-CCceEEEEccccc--cCcch-
Q 004509 643 GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS------------DAYKESVLPA-AVSARVSIEAGST--FGWEK- 706 (748)
Q Consensus 643 G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~------------~~~~~~v~~~-~~~~vv~vE~~~~--~G~~~- 706 (748)
|+.......+.+.|+++||+++|+.+....-.+... ..|++..-+. +.. ++.+..... .|+.+
T Consensus 8 ~~~~~i~~~v~~~~~~~Gi~vevv~f~D~~~~N~AL~~G~iDaN~fQh~~yl~~~n~~~~~~-L~~v~~~~~~p~glYS~ 86 (237)
T PF03180_consen 8 GPDAEILEAVKEKLKKKGIDVEVVEFSDYVQPNEALADGEIDANFFQHIPYLEQFNKENGYN-LVPVGPTYIEPMGLYSK 86 (237)
T ss_dssp TCHHHHHHHHHHHHHHTTEEEEEEEESSTTHHHHHHHTTSSSEEEEEEHHHHHHHHHHHT---EEEEEEEEE---EEEES
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEecchhhcChHHHCCCcceeccCCHHHHHHHHHHCCCc-EEEecceeEEeEEEeec
Confidence 444544456778889999999999888765555432 1233333332 323 344444322 34321
Q ss_pred -h--hc--CCccEEee-CcCCCCCCHHHHHHHhCC
Q 004509 707 -I--VG--SKGKAIGI-DRFGASAPAGKIYKEFGI 735 (748)
Q Consensus 707 -~--v~--~~~~~ig~-d~f~~~G~~~~l~~~~gl 735 (748)
+ +. ..+.+|++ +....-+..-.||+..||
T Consensus 87 k~~sl~~lp~Ga~VaIpnD~sN~~RaL~lLq~aGL 121 (237)
T PF03180_consen 87 KYKSLDDLPDGATVAIPNDPSNQARALKLLQEAGL 121 (237)
T ss_dssp SSSSGGGS-TTEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred ccCchhhcCCCCEEEEeCCccchhHHHHHHHhCCe
Confidence 1 11 24567888 445444555678888876
No 356
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.01 E-value=64 Score=29.42 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=25.8
Q ss_pred CCEEEEEeChhH-HHHHHHHHHHHhCCCcEEEEecC
Q 004509 635 PDVILIGTGSEL-EIAAKAAEELRKGGKAVRVVSFV 669 (748)
Q Consensus 635 ~dvtlva~G~~v-~~al~Aa~~L~~~Gi~v~VId~~ 669 (748)
+++.||+||... ..--+..+.|++.||.+++-|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 789999999844 22234567788999999987743
No 357
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.70 E-value=2.6e+02 Score=28.13 Aligned_cols=29 Identities=7% Similarity=-0.071 Sum_probs=22.7
Q ss_pred cEEEEEEcch-hcchhhHHHHHHHHHHcCC
Q 004509 232 HYTYVILGDG-CQMEGIANEASSLAGHLGL 260 (748)
Q Consensus 232 ~~v~~iiGDG-~~~eG~~~Eal~~A~~~~L 260 (748)
.++++|+|++ +..+|...++...+...++
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I 137 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNV 137 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 3667777766 8888988888888888876
No 358
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=20.65 E-value=4.1e+02 Score=23.54 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=29.8
Q ss_pred CCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEecCC
Q 004509 635 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS 670 (748)
Q Consensus 635 ~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~ 670 (748)
.+|+|.+. +..+.|.+|.+.|++.|+..+++|+..
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~ 42 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK 42 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC
Confidence 57888876 667888999999999999999999875
No 359
>PRK13685 hypothetical protein; Provisional
Probab=20.57 E-value=7.7e+02 Score=26.80 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=50.7
Q ss_pred cEEEEEEcchhcchhh-------HHHHHHHHHHcCCCcEEEEEECCCCcc--ccccc--ccccccHHHHHhhCCcEEEEE
Q 004509 232 HYTYVILGDGCQMEGI-------ANEASSLAGHLGLGKLIAFYDDNHISI--DGDTE--IAFTENVDKRFEGLGWHVIWV 300 (748)
Q Consensus 232 ~~v~~iiGDG~~~eG~-------~~Eal~~A~~~~L~~li~Ivd~N~~~i--~~~~~--~~~~~~~~~~~~a~G~~~~~v 300 (748)
.++++++.||.-+.|. ..++...+...+....++-+-...-++ ++... ......+.+.++.-|-.++.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4578899999987653 356788888888743333332211111 11110 112234677788888888888
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 004509 301 KNGNTGYDDIRAAIKEAKA 319 (748)
Q Consensus 301 ~dG~~D~~~l~~al~~a~~ 319 (748)
+|.+++.+++++..+
T Consensus 274 ----~~~~~L~~if~~I~~ 288 (326)
T PRK13685 274 ----ASLEELRAVYATLQQ 288 (326)
T ss_pred ----CCHHHHHHHHHHHHH
Confidence 377788888877643
No 360
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=20.39 E-value=1.3e+02 Score=32.34 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=24.8
Q ss_pred CCEEEEEeChhHHHHHHHHHHHHhCCCcEEEEe
Q 004509 635 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 667 (748)
Q Consensus 635 ~dvtlva~G~~v~~al~Aa~~L~~~Gi~v~VId 667 (748)
++|+||+.|..- +.+|..|+++|+++.|++
T Consensus 2 ~siaIVGaGiAG---l~aA~~L~~aG~~vtV~e 31 (331)
T COG3380 2 PSIAIVGAGIAG---LAAAYALREAGREVTVFE 31 (331)
T ss_pred CcEEEEccchHH---HHHHHHHHhcCcEEEEEE
Confidence 469999988743 557778999999999997
Done!