RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004509
(748 letters)
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 1310 bits (3394), Expect = 0.0
Identities = 582/674 (86%), Positives = 624/674 (92%), Gaps = 1/674 (0%)
Query: 74 AAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYN
Sbjct: 1 GAVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYN 60
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETP 192
PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETP
Sbjct: 61 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETP 120
Query: 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252
G+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA
Sbjct: 121 GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEAC 180
Query: 253 SLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRA 312
SLAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWVKNGNTGYDDIRA
Sbjct: 181 SLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRA 240
Query: 313 AIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHV 372
AIKEAKAVTDKPTLI+VTTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F V
Sbjct: 241 AIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFV 300
Query: 373 PEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT 432
PEDVK HWSRH EGA LEA+WNAKFAEYEKKY ++AA KSI +G+LP GW ALP YT
Sbjct: 301 PEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYT 360
Query: 433 PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFG 492
PESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFG
Sbjct: 361 PESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFG 420
Query: 493 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 552
VREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLG
Sbjct: 421 VREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLG 480
Query: 553 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 612
EDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL
Sbjct: 481 EDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLP 540
Query: 613 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 672
GTSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWE
Sbjct: 541 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 600
Query: 673 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 732
LFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE
Sbjct: 601 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 660
Query: 733 FGITAEAVITAAKE 746
+GIT E++I AAK
Sbjct: 661 YGITVESIIAAAKS 674
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 1257 bits (3254), Expect = 0.0
Identities = 359/693 (51%), Positives = 472/693 (68%), Gaps = 10/693 (1%)
Query: 60 RRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAP 119
+ + + + + ++ + S+NTIR L++DA+EKANSGHPG+PMG AP
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAP 61
Query: 120 MGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWG 179
M + L+ + M++NP NP WFNRDRFVLSAGHG ML Y+LLHL+GYD V DDLKNFRQWG
Sbjct: 62 MAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYD-VTMDDLKNFRQWG 120
Query: 180 SKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILG 239
SKTPGHPE T G++ TTGPLGQG+A AVG+A+AE+HLAA+YN+ IVDHYTY I G
Sbjct: 121 SKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180
Query: 240 DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW 299
DG MEG++ EASSLA HL LG+L+ YD N IS+DGD +F+E+V+ R++ GW VI
Sbjct: 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIR 240
Query: 300 VKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDAT 359
V++GN + I AI+EAKA +PTLI V TTIGFGSPNK+ + HGS LG +E T
Sbjct: 241 VEDGND-IEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLT 299
Query: 360 RKNLGWPYE-PFHVPEDVKKHWSRHVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISS 417
++ W E FHV E+V +++ + V + G T +AEWN EY + YPE A E ++ +
Sbjct: 300 KEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMN 359
Query: 418 GQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFG 477
G LP GWE+ LPTY S A ATRN S +NA+A+++P GGSADLA SN T +
Sbjct: 360 GLLPEGWEQNLPTYELGSKA-ATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEK 418
Query: 478 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCE 537
DF +D +N+ +GVRE MGA NGIALH GL Y TFFVF+DY+R AIR++AL +
Sbjct: 419 DFTRDDYSGKNIWYGVREFAMGAAMNGIALHG-GLKTYGGTFFVFSDYLRPAIRLAALMQ 477
Query: 538 AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKR 597
V YV THDSI +GEDGPTH+PIE LA+ RAMPN+ ++RPADGNE+ A+++A+ + +
Sbjct: 478 LPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALESTNK 537
Query: 598 PSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAE 654
P+ L L+RQ LP L G + + V KGAY++S S DVIL+ TGSE+ +A +A +
Sbjct: 538 PTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSA-SKKETADVILLATGSEVSLAVEAQK 596
Query: 655 ELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA 714
L G VVS S + F+ Q+ YKESVLP AV+ R +IE G+TFGW + VG +G
Sbjct: 597 ALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDV 656
Query: 715 IGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 747
+GID FGASAP KI +E+G T E V+ KE+
Sbjct: 657 LGIDTFGASAPGEKIMEEYGFTVENVVRKVKEM 689
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 1244 bits (3221), Expect = 0.0
Identities = 306/693 (44%), Positives = 412/693 (59%), Gaps = 21/693 (3%)
Query: 73 AAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
+A + +V+TIR LA DAV+K +GHPG M AP+ + L+ MR++
Sbjct: 8 SALTRPRHPDYWTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHD 67
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETP 192
P + +W RDRFVLSAGH + Y L+L G+ ++ D+++ R WGSKTPGHPE TP
Sbjct: 68 PSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFG-LELSDIESLRTWGSKTPGHPEFRHTP 126
Query: 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYN---KPDNEIVDHYTYVILGDGCQMEGIAN 249
G+E+TTGPLGQG+A+AVG+A+A ++ ++ +P DHY YVI DG EG+ +
Sbjct: 127 GVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTS 186
Query: 250 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDD 309
EASSLA LG LI FYD N ISI+ DT IA E+ R+ GWHV V+ G
Sbjct: 187 EASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENV-VG 245
Query: 310 IRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE- 368
I AI A+AVTD+P+ I + T IG+ +PN ++ HG+ALG EV A +K +G+ +
Sbjct: 246 IEEAIANAQAVTDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDK 305
Query: 369 PFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKAL 428
F V EDV H VA G W +F + ++ PE A + + +LP GW+ L
Sbjct: 306 TFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADL 365
Query: 429 PTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-- 486
P + P S A ATR S L+AL LP L GGSADLA SN T +K F +
Sbjct: 366 PHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKE 425
Query: 487 -------RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAG 539
R + FGVREH MGAI +GI LH Y TF F+DYMR A+R++AL +
Sbjct: 426 YTAHWYGRTLHFGVREHAMGAILSGIVLHG-PTRAYGGTFLQFSDYMRPAVRLAALMDID 484
Query: 540 VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA--NRKR 597
IYV THDSIGLGEDGPTHQPIEHL++ RA+P + ++RPAD NETA A++ +A N
Sbjct: 485 TIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSG 544
Query: 598 PSILALSRQKLPHLAGTSIDGVEKGAYIISDNS---SGNKPDVILIGTGSELEIAAKAAE 654
P L L+RQ +P L GT +GV +G Y++SD G +PDVILI TGSE+++A A
Sbjct: 545 PVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQT 604
Query: 655 ELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA 714
L RVVS E F+ Q Y+++VLP VSARV++EAG W ++VG G+
Sbjct: 605 LLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEI 664
Query: 715 IGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 747
+ I+ +G SA +++E+G TAEAV AA+
Sbjct: 665 VSIEHYGESADHKTLFREYGFTAEAVAAAAERA 697
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 1240 bits (3212), Expect = 0.0
Identities = 330/665 (49%), Positives = 435/665 (65%), Gaps = 13/665 (1%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
++ N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 64
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GHG ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANA
Sbjct: 65 GHGSMLIYSLLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANA 123
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+A+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYD
Sbjct: 124 VGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYD 183
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 328
DN ISIDG E FT++ RFE GWHVI +G+ I+ A++EA+AVTDKP+L+
Sbjct: 184 DNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHD-AASIKRAVEEARAVTDKPSLLM 242
Query: 329 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGA 388
T IGFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W G
Sbjct: 243 CKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQW-DAKEAGQ 301
Query: 389 TLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATRNLS 444
E+ WN KFA Y K YP+EAAEF G++P+ ++ + + A A+R S
Sbjct: 302 AKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKAS 361
Query: 445 QTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNG 504
Q + A LP LGGSADLA SN+TL +D + +GVRE GM AI NG
Sbjct: 362 QNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINED-AAGNYIHYGVREFGMTAIANG 420
Query: 505 IALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564
I+LH G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +
Sbjct: 421 ISLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479
Query: 565 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKG 622
AS R PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G
Sbjct: 480 ASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARG 539
Query: 623 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 682
Y++ D +P++I I TGSE+E+A A E+L G RVVS S + FD+Q AY+
Sbjct: 540 GYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYR 597
Query: 683 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 742
ESVLP AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+
Sbjct: 598 ESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVA 657
Query: 743 AAKEV 747
AKE+
Sbjct: 658 KAKEL 662
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 1237 bits (3204), Expect = 0.0
Identities = 345/673 (51%), Positives = 446/673 (66%), Gaps = 18/673 (2%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
+ + + +V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NR
Sbjct: 2 TQFTDIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINR 60
Query: 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPL 201
DRFVLS GH L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPL
Sbjct: 61 DRFVLSNGHAVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPL 118
Query: 202 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261
GQG++NAVG+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG
Sbjct: 119 GQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG 178
Query: 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT 321
LIA YDDN I+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK
Sbjct: 179 NLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 238
Query: 322 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHW 380
DKPTLI++TTTIG+GS + A S+SVHG+ L A +V + G+ + F VP++V H+
Sbjct: 239 DKPTLIKMTTTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHY 297
Query: 381 SRHVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEA 439
+ + + G +WN F+EY+KK+PE AE SGQLPA WE LPTYT + A A
Sbjct: 298 QKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVA 357
Query: 440 TRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-----RNVRFGVR 494
TR LS+T L + LP L+GGSADL SN+T K DFQ + R +R+G+R
Sbjct: 358 TRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIR 417
Query: 495 EHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGED 554
EH MGAI NGI+ PY TF F Y A+R+SAL VI+V THDSIG+GED
Sbjct: 418 EHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGED 477
Query: 555 GPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT 614
GPTHQPIE LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+
Sbjct: 478 GPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGS 537
Query: 615 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 674
SI+ KG Y++ D + PD+IL+ TGSE+ ++ +AA+ L RVVS + F
Sbjct: 538 SIESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTF 594
Query: 675 DEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 734
D+Q Y+ SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG
Sbjct: 595 DKQPLEYRLSVLPDNV-PIMSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFG 650
Query: 735 ITAEAVITAAKEV 747
T E V A++
Sbjct: 651 FTPEGVAERAQKT 663
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 1234 bits (3196), Expect = 0.0
Identities = 350/708 (49%), Positives = 441/708 (62%), Gaps = 20/708 (2%)
Query: 53 LRTPTSRRRLSTSQASLPIRAAAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHP 111
+ T ++ + S +P + L+ T++ A N IR LA+DAV++ANSGHP
Sbjct: 9 MGTLEAQTQGPGSMPPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHP 68
Query: 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDD 171
G+PMG A +G L+ +++NP NP+W +RDRFVLS GHG ML Y+LLHL GYD + ++
Sbjct: 69 GMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYD-LPIEE 127
Query: 172 LKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVD 231
LKNFRQ SKTPGHPE TPG+E TTGPLGQG+ANAVG+AL E LAA +N+ D +IVD
Sbjct: 128 LKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVD 187
Query: 232 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFE 291
H+TYV LGDGC MEGI++EA SLAG L L KLIA YDDN ISIDGD F ++ KRFE
Sbjct: 188 HHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFE 247
Query: 292 GLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSAL 351
GW+VI NG+ D I AAI +AK +DKP+LI T IG G+ KA + VHG+ L
Sbjct: 248 AYGWNVIPNVNGHD-VDAIDAAIAKAKR-SDKPSLICCKTRIGNGAATKAGGHDVHGAPL 305
Query: 352 GAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAE 411
GA E+ TR+ LGW + PF +P++V W G E +WNA FA+Y KYP EAAE
Sbjct: 306 GADEIAKTREALGWTWAPFVIPQEVYAAW-DAKEAGKRSEDDWNAAFAQYRAKYPAEAAE 364
Query: 412 FKSISSGQLPAGWEKALPTYTP----ESPAEATRNLSQTCLNALAKTLPGLLGGSADLAS 467
F+ +G LPA W ATR SQ + LA LP LLGGSADL
Sbjct: 365 FERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTG 424
Query: 468 SNMTLLKMFGDFQKDTPEE-----RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVF 522
SN+T K + + ++ +GVRE GM A NG+ LH G P+ TF F
Sbjct: 425 SNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLHG-GYKPFGGTFLTF 483
Query: 523 TDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGN 582
+DY R A+R++AL + I+V THDSIGLGEDGPTHQ +EH+AS R +PN+ + RPAD
Sbjct: 484 SDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTV 543
Query: 583 ETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISD-NSSGNKPDVIL 639
ETA A+ AV + PS L SRQ L A T + VEKG Y++ D + +IL
Sbjct: 544 ETAVAWTYAV-AHQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWDEEIVARKIIL 602
Query: 640 IGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 699
I TGSE+E+A KA E L + G A RVVS S ++FD Q Y+E VLP V RV+IEAG
Sbjct: 603 IATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGV-RRVAIEAG 661
Query: 700 STFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 747
T W K VG +G +GID FG SAPAG ++K FG T E VI AK V
Sbjct: 662 VTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTVEHVIETAKAV 709
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 1230 bits (3184), Expect = 0.0
Identities = 334/663 (50%), Positives = 440/663 (66%), Gaps = 17/663 (2%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
+EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV+S
Sbjct: 6 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMS 65
Query: 148 AGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMAN 207
GHGC LQYALLH+AGY+ + DDLK FRQ GS+TPGHPE F TPG+EVTTGPLGQG+AN
Sbjct: 66 NGHGCALQYALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIAN 124
Query: 208 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
AVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI Y
Sbjct: 125 AVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIY 184
Query: 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLI 327
D N+ISIDG T ++FTE +++ +G+HVI VKNG+T Y+ +R A+ EAKA KP +I
Sbjct: 185 DSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMI 244
Query: 328 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE 386
TTTIGFGS +K + VHG+ LG +++ + G P + + V +DV+ + H+ +
Sbjct: 245 VQTTTIGFGS-SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDK 303
Query: 387 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 446
+ + W A+Y +P E A F + G+LP+GWE LPT S A ATR S+
Sbjct: 304 CSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTN---SSAIATRKASEN 360
Query: 447 CLNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTPEERNVRFGVREHGMGAICNG 504
CL L +P L+GGSADL SN+T DF + E R +RFGVREH M AI NG
Sbjct: 361 CLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNG 420
Query: 505 IALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 564
+ H G+IP+ TF F Y A+R++A+ VIYV THDSIG+GEDGPTHQP+E +
Sbjct: 421 LDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479
Query: 565 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAY 624
A+ RAMPN+ ++RP+D ET+GA+ VA+++ P++L LSRQ +G+SI+GV GAY
Sbjct: 480 AALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGAY 539
Query: 625 IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKES 684
+ D ++++ +GSE+ +A AA+ L + VRVVS ELFD Q D Y+++
Sbjct: 540 SVVDVP---DLQLVIVASGSEVSLAVDAAKALSGELR-VRVVSMPCQELFDAQPDTYRQA 595
Query: 685 VLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAA 744
VLPA V VS+EA +FGWEK +G+ FGASAPAG +YK+FGIT E V+
Sbjct: 596 VLPAGV-PVVSVEAYVSFGWEKYS---HAHVGMSGFGASAPAGVLYKKFGITVEEVVRTG 651
Query: 745 KEV 747
+E+
Sbjct: 652 REL 654
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 1224 bits (3169), Expect = 0.0
Identities = 338/666 (50%), Positives = 439/666 (65%), Gaps = 17/666 (2%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
L SVN IRFLA+DAVEKA SGHPG+PMG AP+ ++L+ EVMR+NP +P W +R
Sbjct: 2 KETRDLETLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDR 61
Query: 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPL 201
DRFVLSAGHG ML YA+LHL GYD + ++LK+FRQWGSKTPGHPE TPG+EVTTGPL
Sbjct: 62 DRFVLSAGHGSMLLYAVLHLTGYD-LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPL 120
Query: 202 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261
GQG++ AVGLALAE+ LAA +N+P + +VDHYTYV+ DG MEG++ EA+SLAGH GL
Sbjct: 121 GQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLS 180
Query: 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT 321
KLI F+DDN ISIDG T++AFTE+V R+ GW + V++ N + +R AIK AK
Sbjct: 181 KLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVND-LEALRKAIKLAKL-D 238
Query: 322 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWS 381
++PTLI V + IGFGSP K +S HG LG + V+ATR+NLGWPY PF VPE+V +H
Sbjct: 239 ERPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHM- 296
Query: 382 RHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATR 441
+G + W Y + YP+ E G+LP E+ P++ ATR
Sbjct: 297 DMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEE-PPSF---DKPIATR 352
Query: 442 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 501
S LN LA LP LLGGSADL SN T + DF + P R + FGVREH MGAI
Sbjct: 353 AASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAI 412
Query: 502 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 561
NG+ LH G Y TF VF+DYMR AIR++AL ++V THDSI LGEDGPTHQP+
Sbjct: 413 LNGLNLHG-GYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPV 471
Query: 562 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEK 621
EHL S RAMPN+ ++RPAD ET A+ VA+ ++ P+ L L+RQ +P L+ G+ +
Sbjct: 472 EHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLR 531
Query: 622 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAY 681
G Y++ D +P +L+ TGSE+ +A +A LR+ G VRVVS S+ELF Q +AY
Sbjct: 532 GGYVLEDVE---EPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAY 588
Query: 682 KESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 741
++ VLP + V++EAG++ GWE+ K + +DRFGASAP ++Y+ G T E V
Sbjct: 589 RKEVLPPGL-PVVAVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVA 644
Query: 742 TAAKEV 747
A +
Sbjct: 645 EAFLSL 650
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 1223 bits (3166), Expect = 0.0
Identities = 311/669 (46%), Positives = 416/669 (62%), Gaps = 17/669 (2%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
++ + N IRFL++DA KA SGHPG+PMG A + +L+ + +++NP NP+W NRDRFV
Sbjct: 4 SIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFV 63
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
LS GHG ML Y+LLHL GYD + +D+KNFRQ SKTPGHPE TPG+E TTGPLGQG+
Sbjct: 64 LSNGHGSMLLYSLLHLTGYD-LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGV 122
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
ANAVG+AL EK L+ RYN PD +++DH+TYV LGDGC MEG+++EA SLAG LGL KL+A
Sbjct: 123 ANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVA 182
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT 325
F+DDN+ISIDGDT+ F++N +RF GWHVI +G+ + I AI EA + KPT
Sbjct: 183 FWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHD-FVAIEKAINEAHSQQQKPT 241
Query: 326 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 385
LI T IGFGSP KA + SVHGS L +E + K L W Y+ F +P+DV K+W
Sbjct: 242 LICCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYW-DARE 300
Query: 386 EGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATR 441
+G LEA W + + K + EF+ + S +LP G E A+ Y + ATR
Sbjct: 301 KGQALEANWQGQRNLF--KDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATR 358
Query: 442 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 501
SQ L L K +P + GGSADL SN T + +GVRE GM AI
Sbjct: 359 KASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAI 418
Query: 502 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 561
NG++L+ G+ PY TF VF+DY R AIR+SAL + V++VM+HDSIGLGEDGPTHQPI
Sbjct: 419 MNGLSLYG-GIKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPI 477
Query: 562 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGV 619
EH+ S R +PN+ + RPAD ET A+K AV ++ PS++ L+RQ L + T + +
Sbjct: 478 EHVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMPVVQTQHQVANI 537
Query: 620 EKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSD 679
+G Y++ DN + ++ TGSE+E+A K A E K G + V S E+F Q+
Sbjct: 538 ARGGYLVKDNP---DAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAH 594
Query: 680 AYKESVLPAAVSARVSIEAGSTFGWEKIVGSK-GKAIGIDRFGASAPAGKIYKEFGITAE 738
YK++V+ + V +E W K + G+ GI FG SAPA ++K FG T E
Sbjct: 595 EYKKTVIKDDI-PAVFVEMAQPDMWYKYMPKAGGEVKGIYSFGESAPAEDLFKRFGFTVE 653
Query: 739 AVITAAKEV 747
+ +
Sbjct: 654 NISNIVAKY 662
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 1155 bits (2991), Expect = 0.0
Identities = 273/664 (41%), Positives = 380/664 (57%), Gaps = 35/664 (5%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143
+ ++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W NRDR
Sbjct: 2 NIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY-HLKHNPKNPTWLNRDR 60
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQ 203
V S GH L Y+ LHL+GYD + +DLKNFRQ SKTPGHPE T G+E+ TGPLGQ
Sbjct: 61 LVFSGGHASALLYSFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQ 118
Query: 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 263
G+ANAVG A+A K ++DH Y + GDG EGI+ EA SLAG L
Sbjct: 119 GVANAVGFAMAAKKAQNLLGSD---LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNF 175
Query: 264 IAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 323
I YD N+ISI+GD +AF ENV RFE G+ V+ + NG+ Y++I A+++AK + K
Sbjct: 176 ILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSI-NGHD-YEEINKALEQAKK-STK 232
Query: 324 PTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSR 382
P LI TTI G+ S+ HG+ LG + + ++ G+ FH+P+ K +
Sbjct: 233 PCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFES 292
Query: 383 HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRN 442
V G EA+W K + K E + P + A P + + ATR+
Sbjct: 293 AVELGDLEEAKWKDKLEKSAK--KELLERLLN------PDFNKIAYPDFKGKD--LATRD 342
Query: 443 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 502
+ LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH M AI
Sbjct: 343 SNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDF----VEGKNIHFGIREHAMAAIN 398
Query: 503 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 562
N A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE
Sbjct: 399 NAFARYG-IFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIE 457
Query: 563 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 622
L++FRAMPN L RPADG E A+++A+ N PS LSRQKL L V+ G
Sbjct: 458 QLSTFRAMPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNG 516
Query: 623 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 682
AY++ ++ + L+ +GSE+ + ++A EL K G A VVS +ELF++Q AY+
Sbjct: 517 AYLLKES---KEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQ 573
Query: 683 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 742
E +L V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 574 ERLLKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVN 627
Query: 743 AAKE 746
Sbjct: 628 FILS 631
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 880 bits (2276), Expect = 0.0
Identities = 170/676 (25%), Positives = 277/676 (40%), Gaps = 70/676 (10%)
Query: 77 ETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNP 136
+ AL + + N +R ++ A A SGHP A + +L+ MRY ++P
Sbjct: 3 HKPDQQKLQAL-KDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDP 61
Query: 137 YWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEV 196
+ DRFVLS GH + YA+ AG+ + E +L N R+ S GHP + +V
Sbjct: 62 RNPHNDRFVLSKGHAAPILYAVWAEAGF--LAEAELLNLRKISSDLDGHPVP-KQAFTDV 118
Query: 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 256
TG LGQG+ A G+A K+ + + Y +LGDG EG EA + A
Sbjct: 119 ATGSLGQGLGAACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFAS 169
Query: 257 HLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIK 315
L L+A D N + + + KR E GWH I V +G++ +++ A
Sbjct: 170 IYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGHS-VEELCKAFG 227
Query: 316 EAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPED 375
+AK +PT I T G G + S HG L + + +
Sbjct: 228 QAK---HQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYS---------- 274
Query: 376 VKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPES 435
+ +K + P+E A I++ ++P+ LP+Y
Sbjct: 275 -----------------QIQSK-KKILATPPQEDAPSVDIANIRMPS-----LPSYKVGD 311
Query: 436 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVRE 495
ATR L L ++ D +S + F+K+ P+ R + + E
Sbjct: 312 KI-ATRKAYGQALAKLGHASDRIIALDGDTKNSTFS-----EIFKKEHPD-RFIECYIAE 364
Query: 496 HGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG 555
M +I G A + +P+C+TF F IR++A+ E+ + +H + +GEDG
Sbjct: 365 QNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDG 423
Query: 556 PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS 615
P+ +E LA FR++P + P+DG T A ++A AN K + SR + + +
Sbjct: 424 PSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNN 482
Query: 616 IDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS----- 670
D A ++ V +IG G L A AAE L+K +RV+ +
Sbjct: 483 EDFQVGQAKVVLK---SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLD 539
Query: 671 WELFDEQSDAYKESVLPA-AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKI 729
+L + + A K +L I + G + ++R S ++
Sbjct: 540 RKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAEL 599
Query: 730 YKEFGITAEAVITAAK 745
K FGI +A+ A +
Sbjct: 600 LKMFGIDRDAIAQAVR 615
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 337 bits (866), Expect = e-104
Identities = 116/799 (14%), Positives = 216/799 (27%), Gaps = 123/799 (15%)
Query: 46 KSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAAL--------VEKSVNTIRF 97
+ P+ A+E ++ + +
Sbjct: 12 SGLVPRGSHMTNPVIGTPWQKLDRPVSEEAIEGMDKYWRVTNYMSIGQIYLRSNPLMKEP 71
Query: 98 LAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYA 157
D V+ GH G G L + R + F++ GHG +
Sbjct: 72 FTRDDVKHRLVGHWGTTPGLN----FLLAHINRLIADHQ---QNTVFIMGPGHGGPAGTS 124
Query: 158 LLHLAGYDSVQ-------EDDLKNFRQWGSKTPGHPE--NFETPGIEVTTGPLGQGMANA 208
++ G + E L+ F + S G P ETPG G LG +++A
Sbjct: 125 QSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHA 184
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN---EASSLAGHLGLGKLIA 265
G + + I+GDG G +++ L G ++
Sbjct: 185 YGAVMNNP--------------SLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLP 230
Query: 266 FYDDNHISIDGDTEIAF--TENVDKRFEGLGWHVIWVKNGNTGYD--------------- 308
N I T +A E + F G+G+H G D
Sbjct: 231 ILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETI 290
Query: 309 -----DIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNK------ANSYSVHGSALGAKEVD 357
DI+AA + ++ T G+ P S+ H L +
Sbjct: 291 FDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSWRAHQVPLASARDT 350
Query: 358 ATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS 417
+ + + PE++ + + + A
Sbjct: 351 EEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGA-----NPNANGGVIRED 405
Query: 418 GQLPAGWEKALPTYTPESP----AEATRNLSQTCLNALAKTLPGLLGGSADLASSN---- 469
+LP + + EA R L C + + D +SN
Sbjct: 406 LKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNA 465
Query: 470 -MTLLK---MFGDFQKDTPEERNVRFGVREHGMGAICNGIALH-----SPGLIPYCATFF 520
+ G E V V E C G G+ +F
Sbjct: 466 TYEVTDKQWDNGYLSGLVDEHMAVTGQVTEQLSEHQCEGFLEAYLLTGRHGIWSSYESFV 525
Query: 521 VFTDYM--------RAAIRISALCE--AGVIYVMTHDSIGLGEDGPTHQP---IEHLASF 567
D M A +R + + V +++ +G +HQ L +
Sbjct: 526 HVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINK 585
Query: 568 RAMPNILM--LRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL--AGTSIDGVEKGA 623
+ + D N + + + + + +Q P + +E GA
Sbjct: 586 TFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGA 645
Query: 624 YII---SDNSSGNKPDVILIGTGSELEIAA-KAAEELRKGGKAVRVVSFVSWELFDEQ-- 677
S+ + ++ V+L G A++ L K G +VV+ V +
Sbjct: 646 AEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSREN 705
Query: 678 -----SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA----IGIDRFGASAPAGK 728
+D + A + + + I +G G++
Sbjct: 706 NDEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFD 765
Query: 729 IYKEFGITAEAVITAAKEV 747
+ + + A+ AA ++
Sbjct: 766 MVRVNDMDRYALQAAALKL 784
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 9e-12
Identities = 129/752 (17%), Positives = 196/752 (26%), Gaps = 313/752 (41%)
Query: 2 ASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRR 61
S+ TLS HG S EH L + T S S L+ + L PT
Sbjct: 4 YSTRPLTLS----------HG---SLEHV-LLVPTASFFIASQLQEQFNKILPEPTEGFA 49
Query: 62 LS---TSQASLPIR-----AAAVETLETSTDAALVEKSVNTI--RFLA------------ 99
T+ A L + ++ VE + ++ + +L
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 100 -----------------VDAVEKAN----SGHPGLPMGCAPMGHI-LY------------ 125
+ A A G+ L
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 126 -DEVMR-----YNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWG 179
+E +R Y+ D SA L + + V L N +W
Sbjct: 170 FEE-LRDLYQTYHV-----LVGDLIKFSAET---LSELIRTTLDAEKVFTQGL-NILEWL 219
Query: 180 SKTPGHPENFETPGIEVT-----TGPLGQGMANAVGL-ALAEKHLAARYNKPDNEIVDHY 233
+P N TP + + PL +G+ LA HY
Sbjct: 220 E----NPSN--TPDKDYLLSIPISCPL-------IGVIQLA-----------------HY 249
Query: 234 TYVILGDGCQMEGI--ANEASSLAGHLGLGK--LIAFYDDNHISIDGDTEIAFTENVDKR 289
V ++ G S L G G + + A I+ D+ +F +V K
Sbjct: 250 -VVT----AKLLGFTPGELRSYLKGATGHSQGLVTAVA----IAE-TDSWESFFVSVRKA 299
Query: 290 FEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTD-KPTLIRVTTTIGFGSPNKANSY--SV 346
L + G R EA T P+++ + G P S S+
Sbjct: 300 ITVLFF---------IGV---RC--YEAYPNTSLPPSILEDSLENNEGVP----SPMLSI 341
Query: 347 HGSALGA--KEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKK 404
V+ T H+P + V +L N
Sbjct: 342 SNLTQEQVQDYVNKTNS---------HLPAG------KQVE--ISL---VNG-------- 373
Query: 405 YPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSAD 464
A + SG P P+S L GL
Sbjct: 374 ----AKNL--VVSG--P-----------PQS-------------------LYGL------ 389
Query: 465 LASSNMTLLKMF---GDFQKDTP-EERNVRFGVREHGMGAICNGIAL------HSPGLIP 514
N+TL K G Q P ER ++F R L HS L+P
Sbjct: 390 ----NLTLRKAKAPSGLDQSRIPFSERKLKFSNR-----------FLPVASPFHSHLLVP 434
Query: 515 YCATFFVFTDYMRAAIRISALCEAGV-IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNI 573
A+ + D ++ + +A + + +Y T D G D
Sbjct: 435 --ASDLINKDLVKNNVSFNA-KDIQIPVY-DTFD----GSD------------------- 467
Query: 574 LMLRPADGNETAGAYKVAVANRKRPSIL-ALSRQ-----KLPHLAGTSI-D---GVEKG- 622
LR G+ + I+ + R T I D G G
Sbjct: 468 --LRVLSGSIS-------------ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 623 AYIISDNSSGNKPDVILIGT---GSELEIAAK 651
+ N G VI+ GT + + K
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 56.2 bits (135), Expect = 3e-08
Identities = 44/244 (18%), Positives = 76/244 (31%), Gaps = 71/244 (29%)
Query: 56 PTSRRRLSTSQASLPIRAAAVE-TLETSTDAALVEKSVNTIRFLAVDAVEKANS---GHP 111
P + + IR ET D L + + F ++ E + S
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI----FKEIN--EHSTSYTFRSE 1722
Query: 112 -GL--------P----MGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH--GCMLQY 156
GL P M A E ++ AGH G +Y
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAF------EDLKS------KGLIPADATFAGHSLG---EY 1767
Query: 157 -ALLHLAGYDSVQEDDLK--NFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA----NAV 209
AL LA S+ E ++ +R G P E+ G GM V
Sbjct: 1768 AALASLADVMSI-ESLVEVVFYR-------GMTMQVAVPRDEL--GRSNYGMIAINPGRV 1817
Query: 210 GLALAE---KHLAARYNKPDNEIV-------DHYTYVILGDGCQMEGIANEASSLAGHLG 259
+ ++ +++ R K +V ++ YV GD + + + +++ +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD---LRAL-DTVTNVLNFIK 1873
Query: 260 LGKL 263
L K+
Sbjct: 1874 LQKI 1877
Score = 49.3 bits (117), Expect = 5e-06
Identities = 98/585 (16%), Positives = 160/585 (27%), Gaps = 221/585 (37%)
Query: 245 EGIA--NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTE---NVDKRFEG--LGWHV 297
EG A +E ++ A L +GK + + ++ F + FE L
Sbjct: 46 EGFAADDEPTTPA-EL-VGKFLGYVSS---LVEPSKVGQFDQVLNLCLTEFENCYLE--- 97
Query: 298 IWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVD 357
GN DI A AK + + T + T + +Y +
Sbjct: 98 -----GN----DIHALA--AKLLQENDTTLVKTKEL-------IKNY-----------IT 128
Query: 358 ATRKNLGWPYEPFHVPEDVKKHWSRHVAEG-ATLEA---------EWNAKFAE----YEK 403
A R P++ R V EG A L A ++ F E Y+
Sbjct: 129 A-RIMAKRPFDKKSNSA-----LFRAVGEGNAQLVAIFGGQGNTDDY---FEELRDLYQT 179
Query: 404 KYPEEAAEFKSISSGQL------PAGWEKALPTY--------TPES-PAEATRNLSQTCL 448
Y + S+ L EK P + P + L
Sbjct: 180 -YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-------L 231
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 508
++ + P + G LA + K+ G TP E + + G H
Sbjct: 232 LSIPISCPLI--GVIQLAHY-VVTAKLLGF----TPGE-----------LRSYLKGATGH 273
Query: 509 SPGLIPYCATFFV-------FTDYMRAAIRIS------ALCEAGVIYV---MTHDSIGLG 552
S GL+ A F +R AI + + + DS+
Sbjct: 274 SQGLVT--AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 553 EDGPTH----------QPIEHLASFRA-MP----------N-----------------IL 574
E P+ Q +++ + +P N L
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 575 MLR----PADGNETAGAYKVAVANRKRPSILALSRQKLP-----H---LAGTSIDGVEKG 622
LR P+ +++ ++ + RK L S + LP H L S
Sbjct: 392 TLRKAKAPSGLDQS----RIPFSERK----LKFSNRFLPVASPFHSHLLVPAS------- 436
Query: 623 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 682
I D N + +++I V S +
Sbjct: 437 DLINKDLVKNN----VSF-NAKDIQIP---------------VYDTFDGSDLRVLSGSIS 476
Query: 683 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAG 727
E ++ + V WE K I +D FG +G
Sbjct: 477 ERIVDCIIRLPVK--------WETTTQFKATHI-LD-FGPGGASG 511
Score = 40.4 bits (94), Expect = 0.002
Identities = 53/310 (17%), Positives = 83/310 (26%), Gaps = 120/310 (38%)
Query: 353 AKEV----DA-TRKNLGWPYEPFHVPEDVK---KHWSRHV--AEGATLEAEWNA-KFAEY 401
A++V D + G F + + V + + H +G + ++A F
Sbjct: 1642 AQDVWNRADNHFKDTYG-----FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 402 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGG 461
+ FK I+ + +YT S LS T T P L
Sbjct: 1697 VDGKLKTEKIFKEIN---------EHSTSYTFRSEKGL---LSAT-----QFTQPALT-- 1737
Query: 462 SADLAS-SNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFF 520
L + LK G D A G HS G
Sbjct: 1738 ---LMEKAAFEDLKSKGLIPAD-----------------ATFAG---HSLG--------- 1765
Query: 521 VFTDYMRAAIRISAL-CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPA 579
+Y +AL A V+ IE L ++ R
Sbjct: 1766 ---EY-------AALASLADVM------------------SIESLVE------VVFYR-- 1789
Query: 580 DGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVIL 639
G A R ++A++ P S E Y++ + +
Sbjct: 1790 -GMTMQVAVPRDELGRSNYGMIAIN----PGRVAASFS-QEALQYVV---------ERVG 1834
Query: 640 IGTGSELEIA 649
TG +EI
Sbjct: 1835 KRTGWLVEIV 1844
Score = 37.7 bits (87), Expect = 0.019
Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 59/167 (35%)
Query: 120 MGHILYD-------------------------EVMRYNPKNPYWFNRDRFVLSAGHGCML 154
MG LY +++ NP N F G
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH----FGGEKGKRIRE 1686
Query: 155 QYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA-VGLAL 213
Y+ + + K F++ + + F + G L L L
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSE-----KGLLSA-TQFTQPALTL 1738
Query: 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH-LG 259
E AA + L + +G+ ++ AGH LG
Sbjct: 1739 ME--KAA--------------FEDL----KSKGLIPADATFAGHSLG 1765
Score = 33.5 bits (76), Expect = 0.36
Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 57/151 (37%)
Query: 2 ASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRR 61
++S +F + LL+ T FTQ AL+ + +F LK
Sbjct: 1714 STSYTFRSEKGLLSA-TQ---FTQP------ALTLMEKAAFEDLK--------------- 1748
Query: 62 LSTSQASLPIRA----------------AAVETLETSTDAA-LVEKSVNTIRFLAV-DAV 103
S+ +P A A V ++E +V R + + AV
Sbjct: 1749 ---SKGLIPADATFAGHSLGEYAALASLADVMSIE---SLVEVVFY-----RGMTMQVAV 1797
Query: 104 EKANSGHPGLPM-GCAP--MGHILYDEVMRY 131
+ G M P + E ++Y
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 51.0 bits (123), Expect = 1e-06
Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%)
Query: 550 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 608
G+ G DG THQ L+ R +P ++++ P+D NE PS + R
Sbjct: 422 GIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNA 481
Query: 609 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 667
+ T ++ + G + + ++ G+ + AAK AE L +V
Sbjct: 482 VGVELTPLEKLPIGKGIVKRRGE-----KLAILNFGTLMPEAAKVAESLN-----ATLVD 531
Query: 668 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 712
FV L E + +++ A V++E + G
Sbjct: 532 MRFVKPLDEALILEMAASHE---------ALVTVEENAIMGGAGSGVNEVLMAHRKPVPV 582
Query: 713 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 746
IG+ D F ++ E G+ A + K
Sbjct: 583 LNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKA 617
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 47.1 bits (113), Expect = 2e-05
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 37/215 (17%)
Query: 550 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 608
G+ G DG TH + L+ R++P + + P D E G K A + P + R
Sbjct: 425 GIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGPFAIRYPRGNT 483
Query: 609 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 667
+ + ++ G + DV+++ G L+ A KAAE+L G VV+
Sbjct: 484 AQVPAGTWPDLKWGEWERLKGGD-----DVVILAGGKALDYALKAAEDLPGVG----VVN 534
Query: 668 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 712
FV E+ E + A +++E + G +
Sbjct: 535 ARFVKPLDEEMLREVGGRAR---------ALITVEDNTVVGGFGGAVLEALNSMNLHPTV 585
Query: 713 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 746
+ +GI D F A A ++ GI A A+ T E
Sbjct: 586 RVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAE 620
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 43.6 bits (103), Expect = 2e-04
Identities = 60/253 (23%), Positives = 97/253 (38%), Gaps = 45/253 (17%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHI--------LYDEVMRYNPKN 135
+ L + + IR+ A+ V +A+ L G GH+ +YD N
Sbjct: 74 NLELERRIRSAIRWNAIMTVLRASKKDLEL--G----GHMASFQSSATIYDVCF-----N 122
Query: 136 PYWFNRDR-----FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ--WGSKTPGHPEN 188
++ R+ V GH YA L G + ++ L NFRQ G+ +P
Sbjct: 123 HFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLT--QEQLDNFRQEVHGNGLSSYPHP 180
Query: 189 FETPGI-EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247
P + T +G G A+ A K+L R K + Y LGDG E
Sbjct: 181 KLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTS---KQTVYAFLGDGEMDEPE 237
Query: 248 ANEASSLAGHLGLGKLIAFYDDNHISID----GDTEIAFTENVDKRFEGLGW---HVIWV 300
+ A ++A L L+ + N +D G+ +I ++ FEG GW V+W
Sbjct: 238 SKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII--NELEGIFEGAGWNVIKVMW- 294
Query: 301 KNGNTGYDDIRAA 313
+ +D++
Sbjct: 295 ---GSRWDELLRK 304
Score = 36.7 bits (85), Expect = 0.031
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 617 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSW-ELF 674
+G+ KG Y + G+K V L+G+GS L +AAE L K G V S S+ EL
Sbjct: 707 EGIRKGIYKLET-IEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELA 765
Query: 675 DEQSDAYKESVLPAAVSARVS 695
+ D + ++L + RV
Sbjct: 766 RDGQDCERWNMLHPLETPRVP 786
Score = 29.0 bits (65), Expect = 6.9
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 306 GYDD--IRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSY-SVHGS-ALGAKEVDATRK 361
G+D I AA K+A+ K T+I T G+G + A H + V R
Sbjct: 363 GHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422
Query: 362 NLGWPYE-------PFHVPEDVKKH 379
P P+ + +
Sbjct: 423 RFNVPVSDADIEKLPYITFPEGSEE 447
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.005
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 24/50 (48%)
Query: 402 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPES-PAEATRNLSQTCLNA 450
EK+ K + + +L Y +S PA A + A
Sbjct: 18 EKQ------ALKKL---------QASLKLYADDSAPALA--------IKA 44
Score = 30.3 bits (67), Expect = 1.4
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 13/38 (34%)
Query: 354 KEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLE 391
K++ A+ K Y P +A AT+E
Sbjct: 23 KKLQASLK----LYADDSAPA---------LAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.064
Identities = 66/461 (14%), Positives = 120/461 (26%), Gaps = 135/461 (29%)
Query: 306 GYDDIRAAIKEA-------KAVTDKPTLIRVTTTIG--FGSPNKAN-SYSVHGSALGAKE 355
Y DI + ++A K V D P I I S + + + + + L +E
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 356 -------VDATRKNLGWPYEPFHV----PEDVKKHWSRHVAEGATLEAEWNA--KFAEYE 402
+ R N + P P + + + + +N FA+Y
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI------EQRDRLYNDNQVFAKYN 130
Query: 403 KKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLG-G 461
+ + + +AL P +N+ + G+LG G
Sbjct: 131 VSRLQPYLKLR------------QALLELRPA------KNV----------LIDGVLGSG 162
Query: 462 ----SADLASSNMTLLKM-FGDF-----QKDTPEER-------NVRFGVREHGMGAICNG 504
+ D+ S KM F F ++PE + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 505 IALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV---------IYVMTHD-SI--GLG 552
I L + Y + + + A I + T + L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 553 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 612
TH ++H + L P E L Q LP
Sbjct: 283 AATTTHISLDHHSM--------TLTPD---EVKSLL----LK-----YLDCRPQDLPREV 322
Query: 613 GTSIDGVEKGAYIISDNSSGNKPDVI-LIGTGSELEIAAKAAEELRK-GGKAVRVVSFVS 670
+ N P + +I + + + + + S
Sbjct: 323 -----------------LTTN-PRRLSIIAE--SIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 671 WELFD--EQSDAYKE-SVLPAAVSARVSIEAGSTFGWEKIV 708
+ + E + SV P SA + S W ++
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPP--SAHIPTILLSLI-WFDVI 400
Score = 35.6 bits (81), Expect = 0.070
Identities = 64/434 (14%), Positives = 97/434 (22%), Gaps = 162/434 (37%)
Query: 6 SFTLS-QALL-TRGTS-------HHGFTQSSEHHRLALS---TLSLPSFSGLKSTSSSTL 53
+F LS + LL TR S +HH + L+ SL
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LL---------- 308
Query: 54 RTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI---RFLAVDAVEKA---- 106
+ L LP S A + + T + + D +
Sbjct: 309 ------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 107 -NSGHPGLPMGCAPMGHILYDE--VMRYNPKNP------YWFNRDRFV------------ 145
N P +D V + P WF+ +
Sbjct: 363 LNVLEPAEYRKM-------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
L ++ + +LK EN
Sbjct: 416 LVEKQPKESTISIPSIY-------LELK----------VKLEN----------------- 441
Query: 206 ANAVGLALAEKH--LAARYNKPDN--------EIVDHYTYVILG---DGCQMEGIANEAS 252
H + YN P +D Y Y +G +
Sbjct: 442 -------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 253 SLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDK-RFEGLGWHVIWVKNGNTGYDDIR 311
+ F D F E K R + W N + +
Sbjct: 495 MV-----------FLDFR-----------FLEQ--KIRHDSTAW------NASGSILNTL 524
Query: 312 AAIKEAKA-VTDK-PTLIRVTTTIG-FGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE 368
+K K + D P R+ I F + N +K D R L E
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC-------SKYTDLLRIALMAEDE 577
Query: 369 PFHVPEDVKKHWSR 382
E+ K R
Sbjct: 578 AIF--EEAHKQVQR 589
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 34.0 bits (78), Expect = 0.098
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 591 AVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSEL-EIA 649
AV +L + V++GA + + PDVI IG G +
Sbjct: 52 AVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA-FDDVPDNPDVIFIGGGLTAPGVF 110
Query: 650 AKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 683
A A + L GG+ V + V+ E K+
Sbjct: 111 AAAWKRLPVGGRL--VANAVTVESEQMLWALRKQ 142
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 34.7 bits (80), Expect = 0.10
Identities = 38/169 (22%), Positives = 52/169 (30%), Gaps = 32/169 (18%)
Query: 175 FRQWGSKTPGH------PENFETPGIEVTT--GPLGQGMANAVGLALAEKHLAARYNKPD 226
Q S P + T G L AVG A+A K D
Sbjct: 149 ICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAI------KGD 202
Query: 227 NEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH--ISIDGDTEIAFTE 284
+I + GDG E + A + A +I +N IS +
Sbjct: 203 TKIASAWI----GDGATAESDFHTALTFAHVYRAP-VILNVVNNQWAISTFQAIAGGEST 257
Query: 285 NVDKRFEGLGWHVIWVKNGNTGYDDI---RAAIKEA--KAVT-DKPTLI 327
R G G + V +GN D AA + A +A P+LI
Sbjct: 258 TFAGRGVGCGIASLRV-DGN----DFVAVYAASRWAAERARRGLGPSLI 301
>2vu4_A Oxygen-evolving enhancer protein 2; kDa protein, transit peptide,
higher plants, photosynthes photosystem II, membrane,
thylakoid, chloroplast; 1.98A {Spinacia oleracea}
Length = 273
Score = 33.5 bits (75), Expect = 0.19
Identities = 12/76 (15%), Positives = 22/76 (28%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS++ F A ++ + G + ++ L + SRR
Sbjct: 7 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 66
Query: 61 RLSTSQASLPIRAAAV 76
T + V
Sbjct: 67 LALTVLIGAAAVGSKV 82
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 30.4 bits (69), Expect = 0.78
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 634 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 668
+ D+ + GS+ E+L++ G + ++
Sbjct: 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYL 47
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 30.6 bits (70), Expect = 1.9
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 387 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLS 444
+E K A ++I LP +A + EA R L+
Sbjct: 232 AGAVEPAAEQGLQAAIKAAERAGASVQAID---LPEAVHEAWRIHPIIQDFEAHRALA 286
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 30.6 bits (69), Expect = 2.0
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 633 NKPDVILIGTGSELEIAAKAAEELRKGG 660
+L EL + A+A E + G
Sbjct: 71 EGVTALLTLIDPELGLLAQATERFQAIG 98
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 30.4 bits (68), Expect = 2.3
Identities = 13/73 (17%), Positives = 23/73 (31%)
Query: 502 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 561
+G L + + V + A + E V ++ +G DG H
Sbjct: 327 LSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDER 386
Query: 562 EHLASFRAMPNIL 574
H + P +L
Sbjct: 387 PHPRLWGTFPRVL 399
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bordetella parapertussis 12822} PDB:
2k2e_A
Length = 150
Score = 29.3 bits (65), Expect = 2.5
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 633 NKPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFVS 670
N P+V+L+GTG + + L G V + +
Sbjct: 87 NAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 30.1 bits (68), Expect = 2.5
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 585 AGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 644
G R+ + Q + T+ G + D+ DVI+ TG+
Sbjct: 203 YGLEVWMANRREPTEV----EQTVIEETKTNYYNSSNGYDKLKDSVGK--FDVIIDATGA 256
Query: 645 ELEIAAKAAEELRKGGKAV 663
++ I L + G
Sbjct: 257 DVNILGNVIPLLGRNGVLG 275
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 93
Score = 28.3 bits (62), Expect = 2.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 392 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTP 433
++W E ++KY E A E+++ + G+ P EK P +T
Sbjct: 48 SDWALLREEEKEKYAEMAREWRA-AQGKDPGPSEKQKPVFTS 88
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 30.2 bits (67), Expect = 3.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
F+ G ML + + G ++VQ + GS+TPGH EN + + GP
Sbjct: 214 FMRVTSTGNMLSHVGHTILGMNTVQ----LYMKVPGSRTPGHQENNNFCSVNINIGP 266
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 29.8 bits (67), Expect = 4.0
Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 20/100 (20%)
Query: 375 DVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE 434
D K++ + + + L + F E K + +
Sbjct: 652 DTKEYIYKQIGD--KLNDVYYKMFKSLEAKADD----------------LTYFNDESHVD 693
Query: 435 SPAEATRNLSQTCLNALAKTLPGLLGGSAD--LASSNMTL 472
R L T L+ L+K + S +
Sbjct: 694 FDQMNMRTLRNTLLSLLSKAQYPNILNEIIEHSKSPYPSN 733
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 29.6 bits (67), Expect = 4.1
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 618 GVEKGAYIISDNSSGNKPDVILIGTGSELEIAA-KAAEELRKGGKAVRVVSFVSWELFDE 676
++ ++ N + I +E A + A + R G+AV + D
Sbjct: 319 RIDLLVEALNGEIISNGHEQTCILFSNERRFEAIELARKKRANGEAVVLQDLAGVTDVDA 378
Query: 677 QSDAYKESV 685
S Y++ +
Sbjct: 379 MSSNYQDVI 387
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 29.4 bits (67), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 666
D+ +I G+ + + KAA EL K G + VV
Sbjct: 203 DITIIAYGAMVHESLKAAAELEKEGISAEVV 233
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 29.4 bits (67), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 666
D+ LI G+ + +AA EL K G + V+
Sbjct: 204 DLTLICYGTVMPEVLQAAAELAKAGVSAEVL 234
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 29.1 bits (66), Expect = 4.9
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 18/90 (20%)
Query: 175 FRQWGSKTPGH------PENFETPGIEVTT--GPLGQGMANAVGLALAEKHLAARYNKPD 226
Q + PE+ + + T P+ + A G A++ K +
Sbjct: 112 LGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMK-----LLRTG 166
Query: 227 NEIVDHYTYVILGDGCQMEGIANEASSLAG 256
GDG EG + A
Sbjct: 167 Q-----VAVCTFGDGATSEGDWYAGINFAA 191
>2wsc_G Photosystem I reaction center subunit V, chloroplastic;
photosynthesis, electron transfer, membrane proteins,
large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL;
3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G*
3lw5_G*
Length = 167
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSS-TLRTPTSR 59
MA++++ S L + Q +H + L SFSGL+ + + +S
Sbjct: 1 MAAATASLSSTLLAPCSSKQPQPQQQHQHQQ-----LKCKSFSGLRPLKLNISSNNSSSS 55
Query: 60 RRLSTSQASLPIRAAAVETLETSTDAAL 87
+S+++ S+ RA +L S L
Sbjct: 56 LSMSSARRSMTCRAELSPSLVISLSTGL 83
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 29.3 bits (65), Expect = 5.1
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 124 LYDEVMRYNPKNP-YWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSK 181
++ PKN W +R R ++ L+ L + D KN+ W +
Sbjct: 154 YITAIIEEQPKNYQVWHHR-RVLVE-----WLRDPSQELEFIADILNQDAKNYHAWQHR 206
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 28.7 bits (65), Expect = 5.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 638 ILIG-TGSELEIAA-KAAE---ELRKGGKAVRVV 666
+LIG GS I++ + + K +RVV
Sbjct: 11 LLIGICGS---ISSVGISSYLLYFKSFFKEIRVV 41
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 29.2 bits (66), Expect = 5.2
Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
R+ VL L+ + G DL RQ +F T + P
Sbjct: 114 REAGVLMY-RDYPLELFMAQCYG----NISDLGKGRQMPVHYGCKERHFVTI-----SSP 163
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 256
L + AVG A A K N +V Y G+G EG A+ + A
Sbjct: 164 LATQIPQAVGAAYAAKR------ANANRVVICYF----GEGAASEGDAHAGFNFAA 209
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
decline, ATP-binding, DNA DAMA repair, DNA-binding,
helicase, hydrolase; 1.95A {Escherichia coli} PDB:
2b2n_A* 4dfc_A
Length = 483
Score = 29.3 bits (66), Expect = 5.6
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 396 AKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPA 437
+++ + + + ++ +S G LPAG E P + E
Sbjct: 229 SQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLP 270
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 28.8 bits (65), Expect = 5.8
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 308 DDIRAAIKEAKAVTDKP 324
+ + A I + +TD+P
Sbjct: 53 EALAAEIARCRELTDRP 69
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 28.6 bits (64), Expect = 6.9
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 284 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK 318
NV E LG+H NG I ++E K
Sbjct: 178 ANV-ATAERLGFHTYCPDNGENWIPAITRLLREQK 211
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 28.9 bits (64), Expect = 7.0
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 124 LYDEVMRYNPKNP-YWFNRDRFVLSAGHGCMLQYALLH-LAGYDSVQEDDLKNFRQWG 179
+E+ N KN W R + + +++ D KN W
Sbjct: 91 WCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWS 148
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 28.7 bits (65), Expect = 7.1
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 499 GAICN--------GIALHSPGLIPYCATFFVFTDYMRAA--------IRISALCEAGVIY 542
G+I G+ PG + Y A MR IR++++ +GV
Sbjct: 151 GSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVET 210
Query: 543 VMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPAD 580
M ++ + + + +L P D
Sbjct: 211 PMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPED 248
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 28.8 bits (65), Expect = 7.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 308 DDIRAAIKEAKAVTDKP 324
+ ++A I + K++TDKP
Sbjct: 49 EVVKANIDKIKSLTDKP 65
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 28.8 bits (65), Expect = 8.0
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 41 SFSGLKSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI 95
+FSGL ++ +R + RL SL + A L T+ AL + +
Sbjct: 203 AFSGLL---TAAMRAYDAGERLEDICYSL--QEYAFSMLTEITERALAHTNKGEV 252
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 28.7 bits (65), Expect = 8.2
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 41 SFSGLKSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI 95
+FSG+ ++ L+ + + + S+ + A L + AL + I
Sbjct: 204 AFSGIL---TAALQYLKTGQAIEDISYSI--QETAFAMLVEVLERALYVSGKDEI 253
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 28.4 bits (64), Expect = 9.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 308 DDIRAAIKEAKAVTDKP 324
DD+R AI E + TDKP
Sbjct: 63 DDLRKAISELRQKTDKP 79
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 28.3 bits (64), Expect = 9.3
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 303 GNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKN 362
+TG + AAI+ AK VT K + +GF A S+ HG A AT
Sbjct: 108 LSTGAESNEAAIRMAKLVTGKYEI------VGF-----AQSW--HGMTGAA--ASATYSA 152
Query: 363 LGWPYEPF-----HVP 373
P +P
Sbjct: 153 GRKGVGPAAVGSFAIP 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.388
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,759,274
Number of extensions: 756076
Number of successful extensions: 2232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2099
Number of HSP's successfully gapped: 81
Length of query: 748
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 647
Effective length of database: 3,881,772
Effective search space: 2511506484
Effective search space used: 2511506484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)