RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 004509
(748 letters)
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 369 bits (948), Expect = e-123
Identities = 296/333 (88%), Positives = 316/333 (94%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYNPKNPYWFNRDRFVL
Sbjct: 6 LLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVL 65
Query: 147 SAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA 206
SAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETPG+EVTTGPLGQG+A
Sbjct: 66 SAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIA 125
Query: 207 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 266
NAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA SLAGH GLGKLIAF
Sbjct: 126 NAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAF 185
Query: 267 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 326
YDDNHISIDGDTEIAFTE+V RFE LGWH IWVKNGNTGYDDIRAAIKEAKAVTDKPTL
Sbjct: 186 YDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 245
Query: 327 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 386
I+VTTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F VPEDVK HWSRH E
Sbjct: 246 IKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPE 305
Query: 387 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 419
GA LEA+WNAKFAEYEKKY ++AA KSI +G+
Sbjct: 306 GAALEADWNAKFAEYEKKYADDAATLKSIITGE 338
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 355 bits (913), Expect = e-118
Identities = 188/333 (56%), Positives = 239/333 (71%), Gaps = 6/333 (1%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+ +V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS
Sbjct: 7 KLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSN 65
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GH L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NA
Sbjct: 66 GHAVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNA 123
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YD
Sbjct: 124 VGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYD 183
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 328
DN I+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI+
Sbjct: 184 DNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIK 243
Query: 329 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE- 386
+TTTIG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + +
Sbjct: 244 MTTTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKP 302
Query: 387 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 419
G +WN F+EY+KK+PE AE SGQ
Sbjct: 303 GVEANNKWNKLFSEYQKKFPELGAELARRLSGQ 335
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 344 bits (882), Expect = e-113
Identities = 183/327 (55%), Positives = 230/327 (70%), Gaps = 3/327 (0%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 8 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 67
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANAVG+A
Sbjct: 68 MLIYSLLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMA 126
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 127 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 186
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332
SIDG E FT++ RFE GWHV I+ A++EA+AVTDKP+L+ T
Sbjct: 187 SIDGHVEGWFTDDTAMRFEAYGWHV-IRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTI 245
Query: 333 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEA 392
IGFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W G E+
Sbjct: 246 IGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQW-DAKEAGQAKES 304
Query: 393 EWNAKFAEYEKKYPEEAAEFKSISSGQ 419
WN KFA Y K YP+EAAEF G+
Sbjct: 305 AWNEKFAAYAKAYPQEAAEFTRRMKGE 331
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 317 bits (813), Expect = e-103
Identities = 179/337 (53%), Positives = 231/337 (68%), Gaps = 3/337 (0%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
A +EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV
Sbjct: 2 ASIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFV 61
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
+S GHGC LQYALLH+AGY+ + DDLK FRQ GS+TPGHPE F TPG+EVTTGPLGQG+
Sbjct: 62 MSNGHGCALQYALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGI 120
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
ANAVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI
Sbjct: 121 ANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIV 180
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT 325
YD N+ISIDG T ++FTE +++ +G+HVI VKNG+T Y+ +R A+ EAKA KP
Sbjct: 181 IYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPK 240
Query: 326 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHV 384
+I TTTIGF +K + VHG+ LG +++ + G P + + V +DV+ + H+
Sbjct: 241 MIVQTTTIGF-GSSKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHI 299
Query: 385 AEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLP 421
+ + + W A+Y +P E A F + G+LP
Sbjct: 300 DKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELP 336
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize
(Zea mays) [TaxId: 4577]}
Length = 192
Score = 212 bits (541), Expect = 4e-65
Identities = 173/192 (90%), Positives = 178/192 (92%)
Query: 420 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 479
LP GW ALP YTPESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDF
Sbjct: 1 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDF 60
Query: 480 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAG 539
QKDT EERNVRFGVREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAG
Sbjct: 61 QKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAG 120
Query: 540 VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPS 599
VIYVMTHDSIGLGEDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPS
Sbjct: 121 VIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPS 180
Query: 600 ILALSRQKLPHL 611
ILALSRQKLPHL
Sbjct: 181 ILALSRQKLPHL 192
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component,
PP module {Escherichia coli [TaxId: 562]}
Length = 415
Score = 212 bits (541), Expect = 2e-62
Identities = 64/387 (16%), Positives = 116/387 (29%), Gaps = 30/387 (7%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPY 137
+ L + + IR+ A+ V +A+ GH A + + ++ R
Sbjct: 19 NLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR----ARN 74
Query: 138 WFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVT 197
+ V GH YA L G + ++ L NFRQ E
Sbjct: 75 EQDGGDLVYFQGHISPGVYARAFLEGRLT--QEQLDNFRQEVHGNGLSSYPHPKLMPEFW 132
Query: 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH 257
P +G K L ++ + Y LGDG E + A ++A
Sbjct: 133 QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATR 192
Query: 258 LGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIK 315
L L+ + N +DG ++ FEG GW+VI V G+ + +R
Sbjct: 193 EKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTS 252
Query: 316 EAKAVTDKPTLIRVTTTIGFGSP--------NKANSYSVHGSALGAKEVDATRKNLGWPY 367
T+ T K + + +++ A + P
Sbjct: 253 GKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPK 312
Query: 368 EPFHVPEDVKKHWSRHVAE--------GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 419
+ + + ++ + G AE + +K + + +
Sbjct: 313 KIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVP 372
Query: 420 LPAGWEKALPTYTPESPAEATRNLSQT 446
+ + LP T +E L
Sbjct: 373 VSDADIEKLPYITFPEGSEEHTYLHAQ 399
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 197
Score = 190 bits (483), Expect = 8e-57
Identities = 106/197 (53%), Positives = 128/197 (64%), Gaps = 5/197 (2%)
Query: 420 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 479
LPA WE LPTYT + A ATR LS+T L + LP L+GGSADL SN+T K DF
Sbjct: 1 LPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDF 60
Query: 480 Q-----KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA 534
Q R +R+G+REH MGAI NGI+ PY TF F Y A+R+SA
Sbjct: 61 QPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA 120
Query: 535 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 594
L VI+V THDSIG+GEDGPTHQPIE LA FR++PNI + RPADGNE + AYK ++ +
Sbjct: 121 LSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLES 180
Query: 595 RKRPSILALSRQKLPHL 611
+ PSI+ALSRQ LP L
Sbjct: 181 KHTPSIIALSRQNLPQL 197
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 190
Score = 179 bits (454), Expect = 8e-53
Identities = 94/194 (48%), Positives = 124/194 (63%), Gaps = 6/194 (3%)
Query: 422 AGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD--F 479
+GWE LPT S A ATR S+ CL L +P L+GGSADL SN+T F
Sbjct: 1 SGWEAKLPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDF 57
Query: 480 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAG 539
+ E R +RFGVREH M AI NG+ H G+IP+ TF F Y A+R++A+
Sbjct: 58 SSSSKEGRYIRFGVREHAMCAILNGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHR 116
Query: 540 VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPS 599
VIYV THDSIG+GEDGPTHQP+E +A+ RAMPN+ ++RP+D ET+GA+ VA+++ P+
Sbjct: 117 VIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPT 176
Query: 600 ILALSRQKLPHLAG 613
+L LSRQ +G
Sbjct: 177 VLCLSRQNTEPQSG 190
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 149 bits (377), Expect = 4e-42
Identities = 85/196 (43%), Positives = 114/196 (58%), Gaps = 6/196 (3%)
Query: 420 LPAGWEKALPTYTPESPAE----ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKM 475
+P+ ++ + + A A+R SQ + A LP LGGSADLA SN+TL
Sbjct: 1 MPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG 60
Query: 476 FGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL 535
+D + +GVRE GM AI NGI+LH G +PY +TF +F +Y R A+R++AL
Sbjct: 61 SKAINEDAAG-NYIHYGVREFGMTAIANGISLH-GGFLPYTSTFLMFVEYARNAVRMAAL 118
Query: 536 CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 595
+ + V THDSIGLGEDGPTHQP+E +AS R PN+ RP D E+A A+K V +
Sbjct: 119 MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQ 178
Query: 596 KRPSILALSRQKLPHL 611
P+ L LSRQ L
Sbjct: 179 DGPTALILSRQNLAQQ 194
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize
(Zea mays) [TaxId: 4577]}
Length = 136
Score = 130 bits (327), Expect = 5e-36
Identities = 108/133 (81%), Positives = 123/133 (92%)
Query: 613 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 672
GTSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWE
Sbjct: 2 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 61
Query: 673 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 732
LFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE
Sbjct: 62 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 121
Query: 733 FGITAEAVITAAK 745
+GIT E++I AAK
Sbjct: 122 YGITVESIIAAAK 134
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 118 bits (296), Expect = 9e-32
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 8/134 (5%)
Query: 614 TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 673
+SI+GV GAY + D ++++ +GSE+ +A AA+ L + RVVS EL
Sbjct: 1 SSIEGVRHGAYSVVDVP---DLQLVIVASGSEVSLAVDAAKALSGELRV-RVVSMPCQEL 56
Query: 674 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 733
FD Q D Y+++VLPA V VS+EA +FGWEK +G+ FGASAPAG +YK+F
Sbjct: 57 FDAQPDTYRQAVLPAGVP-VVSVEAYVSFGWEKYSH---AHVGMSGFGASAPAGVLYKKF 112
Query: 734 GITAEAVITAAKEV 747
GIT E V+ +E+
Sbjct: 113 GITVEEVVRTGREL 126
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 118 bits (295), Expect = 1e-31
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 615 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 674
+ + +G Y++ D +P++I I TGSE+E+A A E+L G RVVS S + F
Sbjct: 5 QLANIARGGYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAF 62
Query: 675 DEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 734
D+Q AY+ESVLP AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG
Sbjct: 63 DKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFG 122
Query: 735 ITAEAVITAAKEV 747
T + V+ AKE+
Sbjct: 123 FTVDNVVAKAKEL 135
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 116 bits (291), Expect = 5e-31
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 613 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 672
G+SI+ KG Y++ D + PD+IL+ TGSE+ ++ +AA+ L RVVS +
Sbjct: 2 GSSIESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFF 58
Query: 673 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 732
FD+Q Y+ SVLP V +S+E +T W K ++ GIDRFGAS A +++K
Sbjct: 59 TFDKQPLEYRLSVLPDNVP-IMSVEVLATTCWGKYAH---QSFGIDRFGASGKAPEVFKF 114
Query: 733 FGITAEAVITAAKEV 747
FG T E V A++
Sbjct: 115 FGFTPEGVAERAQKT 129
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component,
C-domain {Escherichia coli [TaxId: 562]}
Length = 186
Score = 92.9 bits (230), Expect = 2e-22
Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 617 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAE-ELRKGGKAVRVVSFVSWELFD 675
+G+ KG Y + G+K V L+G+GS L +AAE + G V S S+
Sbjct: 7 EGIRKGIYKLET-IEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELA 65
Query: 676 EQSDAYKES-----------------VLPAAVSARVSIEAGSTFG-WEKIVGSKGKAIGI 717
+ + A A + + +G
Sbjct: 66 RDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGT 125
Query: 718 DRFGASAPAGKIYKEFGITAEAVITAAKEV 747
D FG S + F + A V+ AA
Sbjct: 126 DGFGRSDSRENLRHHFEVDASYVVVAALGE 155
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 32.6 bits (74), Expect = 0.067
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 635 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARV 694
+ +++ GS E + L G+ + ++ + F ++ + LPA+
Sbjct: 11 AERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFF---AALPASAKVIT 67
Query: 695 SIEAGSTFGW 704
++ G
Sbjct: 68 VLDRTKEPGA 77
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 31.8 bits (71), Expect = 0.19
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 265 AFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKP 324
Y++ F N + ++ + K ++ AIK A A TD P
Sbjct: 117 GPYNNIKNWDYAGLMEVF--NGNGGYDSGAAKGLKAKT----GGELAEAIKVALANTDGP 170
Query: 325 TLIRV 329
TLI
Sbjct: 171 TLIEC 175
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 228
Score = 30.6 bits (68), Expect = 0.59
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 285 NVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIRVTTT 332
+ K +G+ V + + ++AKA+ +P LI T
Sbjct: 136 DFSKIADGVHMQAFRVNK----IEQLPDVFEQAKAIAQHEPVLIDAVIT 180
>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli
[TaxId: 562]}
Length = 152
Score = 30.0 bits (67), Expect = 0.62
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 123 ILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ 177
++ +V+ + + HG LHL GYD +++D+ +
Sbjct: 87 VICRQVVEKEAQEQGKPLEAHWAHMVVHGS------LHLLGYDHIEDDEAEEMEA 135
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 28.2 bits (62), Expect = 1.9
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 637 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSI 696
++LIG G E+ +L G + +VS + + + ++
Sbjct: 16 ILLIGGG---EVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKD-----QPDYR 67
Query: 697 EAGSTFGWEKIVGSKGKAI 715
E F +K +
Sbjct: 68 EDAKRFINPNWDPTKNEIY 86
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 27.2 bits (60), Expect = 2.0
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 371 HVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 409
+PE K + + + + E+ A + + +P+
Sbjct: 51 ELPEKKKMKY---IQDFQREKQEFERNLARFREDHPDLI 86
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId:
69002]}
Length = 183
Score = 28.6 bits (63), Expect = 2.0
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 637 VILIGTGSELEIAA-KAAE---ELRKGGKAVRVVSFVSWELFDEQS 678
+++ GS I++ + + K +RVV + E
Sbjct: 9 LLIGICGS---ISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAH 51
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 27.3 bits (60), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 635 PDVILIGTGSELEIAA-KAAEELRKGGKAVRV 665
D+ L+ +G++ + AA AE LR V++
Sbjct: 4 VDIYLVASGADTQSAAMALAERLRDELPGVKL 35
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 177
Score = 27.4 bits (60), Expect = 5.2
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 625 IISDNSSGNKPDVILIG--TGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 673
+ + ++ G TG+ E A + +++ + G ++L
Sbjct: 7 FVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDL 57
>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex
aeolicus [TaxId: 63363]}
Length = 141
Score = 26.9 bits (59), Expect = 5.9
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 114 PMGCAPMGHILYDE------VMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV 167
PMG G+ + + + + HG ++HL GYD
Sbjct: 66 PMGEEFGGYKILGDVVISQDTAERQARELGHSLEEEVKRLIVHG------IVHLLGYDHE 119
Query: 168 QEDDLKN 174
+ + +
Sbjct: 120 KGGEEEK 126
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 27.3 bits (59), Expect = 6.3
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVS 695
+LIG G+ A AA +R RV+ + ++ Y L +
Sbjct: 6 PFLLIGGGT---AAFAAARSIRARDPGARVL-----IVSEDPELPYMRPPLSKELWFSDD 57
Query: 696 IEAGSTFGWEKIVGS-KGKAIGIDRFGASAPAGKIYKEFGIT 736
T +++ G + F SA + G+
Sbjct: 58 PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVA 99
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 27.3 bits (59), Expect = 6.4
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 672
D+++IG GS AA A L K V V+
Sbjct: 5 DLVVIGAGSGGLEAAWNAATL--YKKRVAVIDVQMVH 39
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 27.2 bits (59), Expect = 6.7
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSW 671
D+++IG GS A A L K V V+
Sbjct: 5 DLVVIGAGSGGLEAGWNAASL--HKKRVAVIDLQKH 38
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.8 bits (58), Expect = 7.6
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 263 LIAFYDDNHISIDGDTEI 280
L++ Y++ + + GD +
Sbjct: 147 LLSTYENIIVKVQGDATV 164
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 27.0 bits (58), Expect = 7.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 636 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 666
++++G G AA A V V+
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVI 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.388
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,763,499
Number of extensions: 132484
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 30
Length of query: 748
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 656
Effective length of database: 1,144,436
Effective search space: 750750016
Effective search space used: 750750016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)