Query 004513
Match_columns 747
No_of_seqs 479 out of 3227
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 00:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2E-107 5E-112 920.1 61.7 516 31-548 189-707 (716)
2 KOG0055 Multidrug/pheromone ex 100.0 5E-106 1E-110 952.3 55.9 520 28-548 69-591 (1228)
3 KOG0055 Multidrug/pheromone ex 100.0 2E-102 4E-107 921.9 63.5 516 31-546 708-1226(1228)
4 COG2274 SunT ABC-type bacterio 100.0 3.9E-95 9E-100 848.3 66.5 516 27-545 191-708 (709)
5 PRK11174 cysteine/glutathione 100.0 3.1E-89 6.7E-94 797.7 69.9 504 39-547 72-586 (588)
6 COG1132 MdlB ABC-type multidru 100.0 3.1E-88 6.6E-93 786.1 69.7 509 34-546 56-565 (567)
7 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.2E-87 6.9E-92 793.7 70.8 507 33-545 179-685 (686)
8 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-87 4.6E-92 796.9 68.3 501 38-541 209-710 (711)
9 PTZ00265 multidrug resistance 100.0 8.7E-88 1.9E-92 844.1 68.0 512 31-545 867-1465(1466)
10 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.9E-86 4.2E-91 789.9 68.3 505 33-542 197-709 (710)
11 TIGR01193 bacteriocin_ABC ABC- 100.0 3.1E-86 6.8E-91 787.7 69.0 501 38-543 204-707 (708)
12 PRK11160 cysteine/glutathione 100.0 3.7E-85 8E-90 761.0 69.3 501 39-543 69-572 (574)
13 TIGR03375 type_I_sec_LssB type 100.0 3.7E-85 8E-90 777.0 68.1 493 38-534 195-689 (694)
14 PRK11176 lipid transporter ATP 100.0 9.3E-85 2E-89 759.1 68.7 504 39-545 74-579 (582)
15 TIGR01846 type_I_sec_HlyB type 100.0 6.4E-84 1.4E-88 766.2 70.4 510 33-545 182-692 (694)
16 PRK10790 putative multidrug tr 100.0 1.1E-83 2.3E-88 751.7 69.4 501 41-547 76-577 (592)
17 TIGR02203 MsbA_lipidA lipid A 100.0 1.4E-82 3E-87 739.0 69.6 507 36-545 60-568 (571)
18 COG4988 CydD ABC-type transpor 100.0 1.5E-82 3.2E-87 707.1 66.4 506 38-547 48-557 (559)
19 PRK10789 putative multidrug tr 100.0 2E-82 4.4E-87 737.5 70.0 507 38-547 44-552 (569)
20 PTZ00265 multidrug resistance 100.0 2.4E-82 5.2E-87 795.1 68.3 514 31-546 98-729 (1466)
21 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-82 6E-87 801.2 67.9 502 38-544 1013-1519(1522)
22 TIGR02868 CydC thiol reductant 100.0 4.1E-82 8.9E-87 729.0 63.3 461 41-505 64-529 (529)
23 PRK13657 cyclic beta-1,2-gluca 100.0 3.3E-81 7.2E-86 730.1 71.6 493 51-546 77-571 (588)
24 TIGR02204 MsbA_rel ABC transpo 100.0 3.5E-81 7.6E-86 728.1 69.2 508 37-545 65-575 (576)
25 TIGR01192 chvA glucan exporter 100.0 1.1E-80 2.3E-85 724.9 70.7 493 51-546 77-571 (585)
26 KOG0056 Heavy metal exporter H 100.0 5.3E-84 1.1E-88 693.2 34.3 501 44-548 273-777 (790)
27 PLN03130 ABC transporter C fam 100.0 7.4E-81 1.6E-85 788.2 67.7 501 37-546 960-1475(1622)
28 KOG0057 Mitochondrial Fe/S clu 100.0 7.4E-81 1.6E-85 683.5 56.5 510 32-546 76-587 (591)
29 PTZ00243 ABC transporter; Prov 100.0 2.7E-80 5.9E-85 781.9 69.8 504 41-546 1009-1547(1560)
30 TIGR02857 CydD thiol reductant 100.0 6.8E-80 1.5E-84 710.6 65.0 481 34-517 48-529 (529)
31 PLN03232 ABC transporter C fam 100.0 5.3E-80 1.2E-84 779.4 65.6 502 37-546 957-1472(1495)
32 TIGR01842 type_I_sec_PrtD type 100.0 3.2E-78 6.9E-83 698.9 67.9 488 36-533 52-542 (544)
33 KOG0054 Multidrug resistance-a 100.0 5.4E-79 1.2E-83 737.8 56.2 501 35-544 863-1374(1381)
34 COG4987 CydC ABC-type transpor 100.0 7.3E-78 1.6E-82 659.6 58.5 498 42-543 70-571 (573)
35 TIGR01271 CFTR_protein cystic 100.0 2.9E-77 6.4E-82 753.6 70.0 498 43-548 938-1455(1490)
36 COG5265 ATM1 ABC-type transpor 100.0 1.3E-77 2.9E-82 639.4 40.0 489 52-543 4-496 (497)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-73 2.7E-78 661.9 60.0 478 36-525 59-551 (555)
38 PLN03130 ABC transporter C fam 100.0 3.4E-73 7.3E-78 718.5 67.9 469 55-544 366-839 (1622)
39 PLN03232 ABC transporter C fam 100.0 3E-73 6.4E-78 718.2 67.4 471 55-545 366-840 (1495)
40 KOG0054 Multidrug resistance-a 100.0 8.3E-73 1.8E-77 684.0 59.6 469 55-544 267-742 (1381)
41 COG4618 ArpD ABC-type protease 100.0 4.9E-73 1.1E-77 616.2 46.8 499 28-534 61-561 (580)
42 PRK10522 multidrug transporter 100.0 2.5E-69 5.5E-74 625.1 60.8 471 43-531 61-537 (547)
43 TIGR00957 MRP_assoc_pro multi 100.0 2.6E-66 5.6E-71 656.0 66.3 476 52-545 380-862 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 8.4E-64 1.8E-68 631.5 67.2 473 49-543 141-646 (1490)
45 TIGR00954 3a01203 Peroxysomal 100.0 7.9E-64 1.7E-68 589.4 56.6 460 41-519 150-653 (659)
46 PTZ00243 ABC transporter; Prov 100.0 6.2E-61 1.4E-65 606.1 65.2 479 48-543 303-879 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 5E-53 1.1E-57 448.2 26.4 238 307-546 1-238 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 9.7E-52 2.1E-56 410.2 21.1 213 308-534 2-226 (240)
49 PRK14257 phosphate ABC transpo 100.0 2.2E-49 4.8E-54 430.4 26.9 223 304-534 76-314 (329)
50 COG1135 AbcC ABC-type metal io 100.0 1.5E-49 3.3E-54 412.6 20.8 216 309-535 2-233 (339)
51 COG1125 OpuBA ABC-type proline 100.0 6.8E-50 1.5E-54 404.1 16.9 213 309-535 2-227 (309)
52 cd03252 ABCC_Hemolysin The ABC 100.0 1.2E-48 2.6E-53 405.7 26.1 233 309-542 1-234 (237)
53 cd03288 ABCC_SUR2 The SUR doma 100.0 8.9E-48 1.9E-52 404.6 27.7 240 304-544 15-255 (257)
54 COG1117 PstB ABC-type phosphat 100.0 1.4E-48 3E-53 386.0 17.8 218 307-534 6-238 (253)
55 cd03253 ABCC_ATM1_transporter 100.0 1.9E-47 4.1E-52 396.3 26.1 232 309-542 1-233 (236)
56 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-47 3.7E-52 394.8 25.4 226 307-534 1-227 (229)
57 cd03251 ABCC_MsbA MsbA is an e 100.0 1.7E-47 3.7E-52 396.1 25.4 230 309-539 1-231 (234)
58 cd03244 ABCC_MRP_domain2 Domai 100.0 2.1E-47 4.6E-52 392.1 25.1 220 307-527 1-220 (221)
59 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3E-47 6.5E-52 395.5 25.9 233 309-541 1-234 (238)
60 COG1120 FepC ABC-type cobalami 100.0 4.9E-47 1.1E-51 393.1 20.5 213 308-534 2-229 (258)
61 cd03245 ABCC_bacteriocin_expor 100.0 3.1E-46 6.7E-51 383.2 24.8 218 308-526 2-220 (220)
62 COG4615 PvdE ABC-type sideroph 100.0 4.8E-44 1E-48 378.5 41.4 473 34-526 52-530 (546)
63 COG1127 Ttg2A ABC-type transpo 100.0 9.7E-47 2.1E-51 379.8 20.0 224 307-543 7-246 (263)
64 COG3839 MalK ABC-type sugar tr 100.0 1.4E-46 3E-51 403.4 21.1 211 308-534 3-224 (338)
65 TIGR02314 ABC_MetN D-methionin 100.0 2.6E-46 5.6E-51 407.8 22.3 215 309-534 2-231 (343)
66 cd03261 ABC_Org_Solvent_Resist 100.0 7.1E-46 1.5E-50 384.6 23.4 220 309-538 1-231 (235)
67 PRK13631 cbiO cobalt transport 100.0 1.5E-45 3.2E-50 399.2 26.3 221 308-535 21-267 (320)
68 COG3842 PotA ABC-type spermidi 100.0 2.2E-46 4.9E-51 403.7 18.9 213 307-535 4-228 (352)
69 COG1116 TauB ABC-type nitrate/ 100.0 3E-46 6.5E-51 380.9 18.7 196 308-522 3-211 (248)
70 cd03260 ABC_PstB_phosphate_tra 100.0 6.1E-46 1.3E-50 383.0 20.8 209 309-531 1-227 (227)
71 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-45 2.8E-50 380.3 23.2 218 305-522 8-226 (226)
72 COG1122 CbiO ABC-type cobalt t 100.0 1E-45 2.2E-50 382.1 20.8 214 308-534 3-229 (235)
73 PRK13650 cbiO cobalt transport 100.0 3.5E-45 7.5E-50 389.5 24.2 217 308-535 4-231 (279)
74 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.1E-45 6.8E-50 377.9 22.3 209 308-534 4-228 (254)
75 COG1136 SalX ABC-type antimicr 100.0 3.8E-45 8.1E-50 372.2 22.2 205 309-524 2-222 (226)
76 PRK14269 phosphate ABC transpo 100.0 4.8E-45 1E-49 381.2 22.2 217 308-534 2-231 (246)
77 PRK13637 cbiO cobalt transport 100.0 7.8E-45 1.7E-49 388.3 24.1 215 309-534 3-235 (287)
78 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.5E-44 3.2E-49 367.7 24.6 203 307-528 5-207 (207)
79 cd03219 ABC_Mj1267_LivG_branch 100.0 7.6E-45 1.6E-49 376.8 22.8 220 309-533 1-232 (236)
80 PRK11650 ugpC glycerol-3-phosp 100.0 8.6E-45 1.9E-49 398.3 24.2 213 308-535 3-226 (356)
81 cd03256 ABC_PhnC_transporter A 100.0 8.6E-45 1.9E-49 377.3 22.3 214 309-532 1-233 (241)
82 PRK11153 metN DL-methionine tr 100.0 3.3E-44 7.2E-49 392.4 26.8 219 309-534 2-231 (343)
83 PRK13647 cbiO cobalt transport 100.0 1.2E-44 2.6E-49 384.5 22.5 212 308-532 4-226 (274)
84 cd03291 ABCC_CFTR1 The CFTR su 100.0 8.3E-44 1.8E-48 379.0 29.0 240 282-541 15-255 (282)
85 PRK14273 phosphate ABC transpo 100.0 1.8E-44 3.9E-49 378.5 23.6 217 308-534 7-239 (254)
86 cd03224 ABC_TM1139_LivF_branch 100.0 1.6E-44 3.4E-49 370.9 22.6 216 309-533 1-221 (222)
87 PRK13646 cbiO cobalt transport 100.0 3.1E-44 6.6E-49 383.6 25.7 221 308-535 2-237 (286)
88 PRK14242 phosphate transporter 100.0 1.5E-44 3.3E-49 378.7 22.7 217 308-534 6-238 (253)
89 TIGR00972 3a0107s01c2 phosphat 100.0 2.1E-44 4.6E-49 376.5 23.6 216 309-534 2-233 (247)
90 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-44 2.9E-49 376.5 22.0 220 309-532 2-234 (243)
91 COG3638 ABC-type phosphate/pho 100.0 7.7E-45 1.7E-49 365.2 19.3 213 308-533 3-237 (258)
92 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-44 4.2E-49 366.0 22.5 200 309-521 1-204 (204)
93 PRK14250 phosphate ABC transpo 100.0 3.8E-44 8.2E-49 373.5 25.1 213 308-534 3-222 (241)
94 PRK11432 fbpC ferric transport 100.0 1.5E-44 3.2E-49 395.7 22.9 211 308-534 6-227 (351)
95 COG1124 DppF ABC-type dipeptid 100.0 1.3E-44 2.9E-49 365.9 20.6 222 308-540 3-239 (252)
96 PRK10744 pstB phosphate transp 100.0 2.8E-44 6.1E-49 378.6 23.8 220 305-534 10-245 (260)
97 PRK13643 cbiO cobalt transport 100.0 5.6E-44 1.2E-48 381.9 26.1 219 309-534 2-234 (288)
98 cd03263 ABC_subfamily_A The AB 100.0 1.7E-44 3.8E-49 370.2 21.3 210 309-531 1-219 (220)
99 PRK13634 cbiO cobalt transport 100.0 5.2E-44 1.1E-48 382.6 25.7 215 309-534 3-236 (290)
100 cd03296 ABC_CysA_sulfate_impor 100.0 2.8E-44 6E-49 373.8 23.0 215 308-534 2-227 (239)
101 PRK13635 cbiO cobalt transport 100.0 3.8E-44 8.3E-49 381.5 24.4 217 308-536 5-232 (279)
102 TIGR03265 PhnT2 putative 2-ami 100.0 2.4E-44 5.3E-49 394.3 23.3 216 308-535 4-226 (353)
103 PRK13537 nodulation ABC transp 100.0 4.4E-44 9.6E-49 385.7 24.8 213 307-534 6-228 (306)
104 TIGR00960 3a0501s02 Type II (G 100.0 1.4E-44 3.1E-49 370.0 19.4 202 309-522 2-216 (216)
105 TIGR01186 proV glycine betaine 100.0 1.4E-44 3.1E-49 396.4 20.7 201 323-534 5-220 (363)
106 cd03258 ABC_MetN_methionine_tr 100.0 3.1E-44 6.7E-49 371.7 22.0 218 309-533 2-230 (233)
107 COG3840 ThiQ ABC-type thiamine 100.0 1.4E-44 3.1E-49 349.2 17.8 209 309-535 2-221 (231)
108 cd03259 ABC_Carb_Solutes_like 100.0 2.3E-44 5E-49 367.7 20.5 202 309-526 1-213 (213)
109 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.2E-44 4.8E-49 368.9 20.1 207 309-522 1-218 (218)
110 PRK13636 cbiO cobalt transport 100.0 6E-44 1.3E-48 380.8 23.9 215 308-535 5-233 (283)
111 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.7E-44 8E-49 373.5 21.8 217 309-534 1-226 (242)
112 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.4E-44 1.4E-48 370.4 23.0 215 309-534 2-222 (236)
113 PRK11629 lolD lipoprotein tran 100.0 7.4E-44 1.6E-48 369.2 23.3 213 308-527 5-228 (233)
114 PRK13642 cbiO cobalt transport 100.0 8E-44 1.7E-48 378.7 24.1 218 308-536 4-232 (277)
115 cd03218 ABC_YhbG The ABC trans 100.0 5.2E-44 1.1E-48 369.6 21.9 215 309-533 1-222 (232)
116 COG4178 ABC-type uncharacteriz 100.0 9.7E-41 2.1E-45 378.1 50.3 463 35-517 91-586 (604)
117 PRK09536 btuD corrinoid ABC tr 100.0 8E-44 1.7E-48 395.1 24.8 213 308-534 3-229 (402)
118 PRK14247 phosphate ABC transpo 100.0 6.4E-44 1.4E-48 373.3 22.6 217 308-534 3-235 (250)
119 COG2884 FtsE Predicted ATPase 100.0 1.5E-44 3.2E-49 351.7 16.1 206 309-527 2-220 (223)
120 TIGR03258 PhnT 2-aminoethylpho 100.0 4.3E-44 9.4E-49 393.2 21.9 213 307-535 4-230 (362)
121 PRK14235 phosphate transporter 100.0 8.5E-44 1.9E-48 376.4 23.3 219 306-534 17-252 (267)
122 PRK10851 sulfate/thiosulfate t 100.0 7.2E-44 1.6E-48 390.6 23.4 211 308-534 2-227 (353)
123 cd03226 ABC_cobalt_CbiO_domain 100.0 3.7E-44 8E-49 364.3 19.6 198 310-523 1-205 (205)
124 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-43 2.4E-48 369.6 23.6 220 309-533 3-231 (242)
125 PRK09452 potA putrescine/sperm 100.0 8.4E-44 1.8E-48 392.4 23.6 212 308-535 14-236 (375)
126 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-43 2.6E-48 363.9 23.0 210 310-521 2-218 (218)
127 PRK13651 cobalt transporter AT 100.0 1.9E-43 4E-48 380.6 25.5 215 309-534 3-255 (305)
128 PRK13644 cbiO cobalt transport 100.0 1.4E-43 3E-48 376.3 24.2 217 309-534 2-225 (274)
129 PRK14240 phosphate transporter 100.0 1.1E-43 2.5E-48 371.5 23.0 218 307-534 2-235 (250)
130 PRK14274 phosphate ABC transpo 100.0 1.2E-43 2.6E-48 373.5 23.2 217 308-534 12-244 (259)
131 cd03265 ABC_DrrA DrrA is the A 100.0 7.2E-44 1.6E-48 366.0 20.9 208 309-531 1-219 (220)
132 PRK14267 phosphate ABC transpo 100.0 1.2E-43 2.5E-48 372.0 22.9 217 308-534 4-238 (253)
133 cd03264 ABC_drug_resistance_li 100.0 5.7E-44 1.2E-48 364.3 19.8 202 309-526 1-211 (211)
134 cd03268 ABC_BcrA_bacitracin_re 100.0 8.1E-44 1.7E-48 362.4 20.7 202 309-526 1-208 (208)
135 PRK14237 phosphate transporter 100.0 1.5E-43 3.3E-48 374.5 23.5 221 304-534 16-252 (267)
136 PRK13632 cbiO cobalt transport 100.0 2.1E-43 4.6E-48 374.2 24.7 215 308-534 7-232 (271)
137 PRK14259 phosphate ABC transpo 100.0 2.1E-43 4.5E-48 374.0 24.5 218 307-534 12-254 (269)
138 PRK11000 maltose/maltodextrin 100.0 9.6E-44 2.1E-48 392.2 22.8 211 308-534 3-224 (369)
139 PRK14239 phosphate transporter 100.0 1.2E-43 2.6E-48 371.6 22.3 217 308-534 5-237 (252)
140 cd03266 ABC_NatA_sodium_export 100.0 8.8E-44 1.9E-48 364.5 20.9 206 309-526 2-218 (218)
141 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.7E-44 1.2E-48 378.2 20.1 211 310-534 26-251 (269)
142 COG1118 CysA ABC-type sulfate/ 100.0 3.3E-44 7.1E-49 371.9 17.5 211 308-534 2-228 (345)
143 PRK09493 glnQ glutamine ABC tr 100.0 1.5E-43 3.4E-48 368.3 22.6 216 309-534 2-226 (240)
144 PRK11614 livF leucine/isoleuci 100.0 2.7E-43 5.8E-48 365.8 24.1 217 308-533 5-226 (237)
145 PRK13652 cbiO cobalt transport 100.0 2.1E-43 4.6E-48 375.4 23.9 214 309-535 4-229 (277)
146 TIGR03410 urea_trans_UrtE urea 100.0 1.1E-43 2.4E-48 366.9 21.1 210 309-531 1-219 (230)
147 PRK14245 phosphate ABC transpo 100.0 1.1E-43 2.5E-48 371.6 21.4 217 308-534 3-235 (250)
148 TIGR03522 GldA_ABC_ATP gliding 100.0 2.2E-43 4.8E-48 379.6 24.0 215 309-534 3-222 (301)
149 PRK13633 cobalt transporter AT 100.0 2.3E-43 5E-48 375.7 23.8 217 308-535 4-235 (280)
150 COG1131 CcmA ABC-type multidru 100.0 1.6E-43 3.4E-48 378.8 22.6 213 308-534 4-227 (293)
151 cd03293 ABC_NrtD_SsuB_transpor 100.0 9E-44 2E-48 365.3 19.9 205 309-529 1-219 (220)
152 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-43 3.6E-48 363.2 21.8 208 309-523 2-220 (221)
153 cd03257 ABC_NikE_OppD_transpor 100.0 1.7E-43 3.6E-48 364.5 21.8 211 309-526 2-228 (228)
154 PRK14251 phosphate ABC transpo 100.0 1.3E-43 2.9E-48 371.1 21.3 217 308-534 4-236 (251)
155 PRK13649 cbiO cobalt transport 100.0 4.7E-43 1E-47 373.1 25.7 220 308-534 2-235 (280)
156 PRK10575 iron-hydroxamate tran 100.0 1.7E-43 3.6E-48 373.7 22.0 212 308-533 11-237 (265)
157 PRK11231 fecE iron-dicitrate t 100.0 2.1E-43 4.6E-48 370.7 22.6 211 309-533 3-227 (255)
158 PRK13640 cbiO cobalt transport 100.0 2.4E-43 5.2E-48 376.0 23.2 215 308-534 5-233 (282)
159 PRK14248 phosphate ABC transpo 100.0 2.2E-43 4.8E-48 373.3 22.7 217 308-534 21-253 (268)
160 PRK11264 putative amino-acid A 100.0 4.6E-43 1E-47 366.7 24.8 216 309-534 4-234 (250)
161 PRK10895 lipopolysaccharide AB 100.0 2.8E-43 6.1E-48 366.5 23.0 216 308-533 3-226 (241)
162 PRK13536 nodulation factor exp 100.0 2E-43 4.4E-48 385.3 22.9 216 308-534 41-262 (340)
163 cd03301 ABC_MalK_N The N-termi 100.0 1.3E-43 2.8E-48 362.0 19.9 202 309-526 1-213 (213)
164 PRK10247 putative ABC transpor 100.0 2.3E-43 4.9E-48 364.0 21.7 208 308-529 7-223 (225)
165 PRK13641 cbiO cobalt transport 100.0 4.1E-43 8.9E-48 375.1 24.4 220 308-534 2-235 (287)
166 PRK13645 cbiO cobalt transport 100.0 4E-43 8.6E-48 375.5 24.1 222 306-534 4-241 (289)
167 PRK14249 phosphate ABC transpo 100.0 6.1E-43 1.3E-47 366.3 25.0 217 308-534 4-236 (251)
168 PRK14268 phosphate ABC transpo 100.0 3.3E-43 7.2E-48 370.0 23.1 217 308-534 12-243 (258)
169 TIGR01288 nodI ATP-binding ABC 100.0 4.6E-43 1E-47 377.5 24.6 216 308-534 4-225 (303)
170 PRK14236 phosphate transporter 100.0 3.2E-43 7E-48 373.0 23.1 219 306-534 23-257 (272)
171 PRK11300 livG leucine/isoleuci 100.0 4.1E-43 8.9E-48 368.1 23.6 221 308-533 5-243 (255)
172 PRK15079 oligopeptide ABC tran 100.0 2.5E-43 5.4E-48 383.4 22.6 226 308-540 8-259 (331)
173 PRK14243 phosphate transporter 100.0 5E-43 1.1E-47 370.0 24.1 217 308-534 10-249 (264)
174 PRK11831 putative ABC transpor 100.0 2.9E-43 6.4E-48 372.7 22.4 217 308-534 7-234 (269)
175 TIGR03005 ectoine_ehuA ectoine 100.0 3.3E-43 7.2E-48 368.5 22.4 216 309-534 1-237 (252)
176 PRK10619 histidine/lysine/argi 100.0 3.8E-43 8.3E-48 369.2 22.9 218 307-534 4-242 (257)
177 TIGR02769 nickel_nikE nickel i 100.0 5.3E-43 1.1E-47 369.9 24.1 223 309-538 3-245 (265)
178 PRK13648 cbiO cobalt transport 100.0 5.4E-43 1.2E-47 370.7 24.1 216 308-535 7-233 (269)
179 PRK13548 hmuV hemin importer A 100.0 7.5E-43 1.6E-47 367.5 24.8 211 309-533 3-230 (258)
180 PRK14253 phosphate ABC transpo 100.0 3.8E-43 8.3E-48 367.2 22.5 216 308-533 3-233 (249)
181 PRK14262 phosphate ABC transpo 100.0 3.1E-43 6.8E-48 368.1 21.7 217 308-534 3-235 (250)
182 PRK14261 phosphate ABC transpo 100.0 4.3E-43 9.4E-48 367.8 22.8 217 308-534 6-238 (253)
183 cd03225 ABC_cobalt_CbiO_domain 100.0 1.9E-43 4.1E-48 360.2 19.5 200 310-521 1-211 (211)
184 cd03247 ABCC_cytochrome_bd The 100.0 3.4E-43 7.3E-48 349.8 20.7 178 309-526 1-178 (178)
185 PRK14256 phosphate ABC transpo 100.0 4.9E-43 1.1E-47 367.2 22.9 218 307-534 3-237 (252)
186 PRK14244 phosphate ABC transpo 100.0 1.9E-43 4.1E-48 370.1 19.7 216 309-534 6-238 (251)
187 PRK11607 potG putrescine trans 100.0 5E-43 1.1E-47 386.8 23.8 213 307-535 18-241 (377)
188 TIGR02673 FtsE cell division A 100.0 2.3E-43 4.9E-48 360.5 19.5 200 309-521 2-214 (214)
189 PRK11124 artP arginine transpo 100.0 6.5E-43 1.4E-47 364.0 23.3 216 308-533 2-230 (242)
190 cd03292 ABC_FtsE_transporter F 100.0 3E-43 6.4E-48 359.4 20.2 201 309-522 1-214 (214)
191 PRK10253 iron-enterobactin tra 100.0 5.8E-43 1.3E-47 369.6 22.8 213 307-533 6-233 (265)
192 TIGR03873 F420-0_ABC_ATP propo 100.0 6.7E-43 1.5E-47 367.1 22.8 211 309-533 2-226 (256)
193 PRK13638 cbiO cobalt transport 100.0 8.3E-43 1.8E-47 369.6 23.4 213 309-535 2-227 (271)
194 PRK14238 phosphate transporter 100.0 1.2E-42 2.7E-47 368.4 24.7 217 308-534 24-256 (271)
195 PRK10584 putative ABC transpor 100.0 7.6E-43 1.6E-47 360.2 22.5 207 308-525 6-227 (228)
196 PRK11247 ssuB aliphatic sulfon 100.0 8E-43 1.7E-47 367.1 22.8 203 308-529 12-219 (257)
197 cd03235 ABC_Metallic_Cations A 100.0 3E-43 6.5E-48 359.5 18.9 197 310-526 1-213 (213)
198 PRK14266 phosphate ABC transpo 100.0 7.8E-43 1.7E-47 365.2 22.2 217 308-534 3-235 (250)
199 PRK13639 cbiO cobalt transport 100.0 1.1E-42 2.4E-47 369.6 23.6 213 309-534 2-227 (275)
200 PRK14270 phosphate ABC transpo 100.0 1.4E-42 3.1E-47 363.5 24.0 217 308-534 4-236 (251)
201 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.2E-43 1.8E-47 355.8 21.6 200 309-526 1-211 (211)
202 PRK10771 thiQ thiamine transpo 100.0 2.3E-42 5E-47 357.8 25.1 209 309-535 2-221 (232)
203 PRK10070 glycine betaine trans 100.0 7.2E-43 1.6E-47 387.2 22.2 199 325-534 42-255 (400)
204 PRK14252 phosphate ABC transpo 100.0 1.1E-42 2.5E-47 367.3 22.7 218 306-533 14-249 (265)
205 PRK14254 phosphate ABC transpo 100.0 1.5E-42 3.3E-47 370.3 23.7 218 307-534 38-270 (285)
206 cd03269 ABC_putative_ATPase Th 100.0 5.7E-43 1.2E-47 356.7 19.5 204 309-526 1-210 (210)
207 PRK14260 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 366.2 22.1 217 308-534 7-244 (259)
208 PRK10908 cell division protein 100.0 2.5E-42 5.5E-47 355.1 24.2 203 309-524 2-217 (222)
209 PRK14271 phosphate ABC transpo 100.0 1.8E-42 3.9E-47 368.1 23.7 219 308-534 21-252 (276)
210 cd03246 ABCC_Protease_Secretio 100.0 1.1E-42 2.4E-47 344.7 20.4 172 309-522 1-173 (173)
211 cd03262 ABC_HisP_GlnQ_permease 100.0 7.2E-43 1.6E-47 356.3 19.7 204 309-522 1-213 (213)
212 PRK11308 dppF dipeptide transp 100.0 2E-42 4.4E-47 375.8 24.2 223 308-540 5-252 (327)
213 PRK14272 phosphate ABC transpo 100.0 2.2E-42 4.8E-47 362.0 23.6 217 308-534 4-237 (252)
214 TIGR01188 drrA daunorubicin re 100.0 9.5E-43 2.1E-47 374.8 21.1 199 324-534 6-214 (302)
215 PRK09473 oppD oligopeptide tra 100.0 2.2E-42 4.7E-47 376.0 23.9 228 308-540 12-259 (330)
216 PRK14265 phosphate ABC transpo 100.0 3.8E-42 8.3E-47 365.2 25.2 218 307-534 19-259 (274)
217 PRK14263 phosphate ABC transpo 100.0 1.8E-42 4E-47 365.2 22.4 217 308-534 8-246 (261)
218 PRK09984 phosphonate/organopho 100.0 2.8E-42 6E-47 363.7 23.7 210 308-531 4-240 (262)
219 PRK11022 dppD dipeptide transp 100.0 2.5E-42 5.4E-47 375.1 23.9 223 309-539 4-250 (326)
220 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-42 2.3E-47 360.4 20.1 210 309-534 1-221 (232)
221 TIGR01978 sufC FeS assembly AT 100.0 2.3E-42 5E-47 359.5 22.4 214 309-532 1-233 (243)
222 PRK13547 hmuV hemin importer A 100.0 2.8E-42 6E-47 365.9 23.3 215 309-533 2-244 (272)
223 PRK14241 phosphate transporter 100.0 3.4E-42 7.3E-47 362.2 23.5 217 308-534 4-243 (258)
224 COG4555 NatA ABC-type Na+ tran 100.0 3.6E-43 7.8E-48 344.6 14.9 212 309-534 2-223 (245)
225 PRK15112 antimicrobial peptide 100.0 3.8E-42 8.2E-47 363.9 23.6 226 308-543 4-251 (267)
226 TIGR00968 3a0106s01 sulfate AB 100.0 3E-42 6.5E-47 358.3 22.3 214 309-534 1-221 (237)
227 PRK14264 phosphate ABC transpo 100.0 3.1E-42 6.7E-47 371.3 23.0 218 307-534 44-290 (305)
228 PRK14255 phosphate ABC transpo 100.0 3.2E-42 7E-47 360.9 22.2 217 308-534 5-237 (252)
229 TIGR03415 ABC_choXWV_ATP choli 100.0 2.4E-42 5.1E-47 380.7 21.9 200 324-534 37-255 (382)
230 PRK14275 phosphate ABC transpo 100.0 5.8E-42 1.3E-46 366.0 23.9 218 307-534 38-271 (286)
231 PRK14258 phosphate ABC transpo 100.0 4.6E-42 1E-46 362.0 22.4 218 307-534 6-246 (261)
232 PRK11144 modC molybdate transp 100.0 4.7E-42 1E-46 376.8 23.2 210 309-535 2-220 (352)
233 PRK11701 phnK phosphonate C-P 100.0 7.1E-42 1.5E-46 359.8 23.3 217 308-534 6-242 (258)
234 TIGR01277 thiQ thiamine ABC tr 100.0 5.3E-42 1.1E-46 350.7 21.5 201 309-527 1-212 (213)
235 PRK15093 antimicrobial peptide 100.0 9.2E-42 2E-46 371.4 24.3 224 309-540 4-256 (330)
236 cd03234 ABCG_White The White s 100.0 5.2E-42 1.1E-46 353.8 21.2 213 309-526 4-226 (226)
237 cd03299 ABC_ModC_like Archeal 100.0 6.8E-42 1.5E-46 355.2 22.2 209 309-534 1-220 (235)
238 COG0410 LivF ABC-type branched 100.0 9.8E-42 2.1E-46 342.9 21.6 221 308-536 3-229 (237)
239 PRK10419 nikE nickel transport 100.0 1.4E-41 3.1E-46 359.7 23.4 227 309-542 4-250 (268)
240 TIGR03740 galliderm_ABC gallid 100.0 9.3E-42 2E-46 351.1 21.4 204 309-530 1-210 (223)
241 PRK14246 phosphate ABC transpo 100.0 9.4E-42 2E-46 359.0 21.8 217 308-534 10-242 (257)
242 PRK11248 tauB taurine transpor 100.0 1E-41 2.2E-46 358.3 21.9 206 309-529 2-216 (255)
243 cd03233 ABC_PDR_domain1 The pl 100.0 1.4E-41 3.1E-46 345.1 21.3 191 308-526 3-202 (202)
244 PRK10418 nikD nickel transport 100.0 4.3E-41 9.4E-46 353.1 24.7 213 308-534 4-231 (254)
245 TIGR02982 heterocyst_DevA ABC 100.0 1.5E-41 3.2E-46 349.0 20.6 207 309-522 2-219 (220)
246 TIGR02142 modC_ABC molybdenum 100.0 2.3E-41 4.9E-46 371.7 22.9 210 313-534 4-222 (354)
247 COG1137 YhbG ABC-type (unclass 100.0 1.9E-42 4.2E-47 339.1 12.2 223 308-535 4-230 (243)
248 cd03297 ABC_ModC_molybdenum_tr 100.0 2E-41 4.4E-46 346.4 20.3 203 310-526 3-214 (214)
249 cd03228 ABCC_MRP_Like The MRP 100.0 2.6E-41 5.5E-46 334.3 20.2 171 309-521 1-171 (171)
250 cd03230 ABC_DR_subfamily_A Thi 100.0 2.5E-41 5.4E-46 335.0 19.9 170 309-522 1-173 (173)
251 cd03229 ABC_Class3 This class 100.0 2.7E-41 5.8E-46 336.3 19.9 172 309-521 1-178 (178)
252 COG4175 ProV ABC-type proline/ 100.0 1.2E-41 2.6E-46 353.1 17.8 225 308-543 4-266 (386)
253 TIGR02323 CP_lyasePhnK phospho 100.0 6.2E-41 1.3E-45 351.4 23.3 217 308-534 3-239 (253)
254 cd03232 ABC_PDR_domain2 The pl 100.0 5.8E-41 1.2E-45 338.0 19.9 182 308-526 3-192 (192)
255 TIGR03608 L_ocin_972_ABC putat 100.0 4E-41 8.6E-46 341.7 18.7 193 311-517 1-206 (206)
256 PRK15056 manganese/iron transp 100.0 9.3E-41 2E-45 354.2 22.0 209 308-533 6-230 (272)
257 cd03213 ABCG_EPDR ABCG transpo 100.0 7.4E-41 1.6E-45 337.8 20.1 183 308-526 3-194 (194)
258 cd03215 ABC_Carb_Monos_II This 100.0 6.5E-41 1.4E-45 334.7 19.3 172 308-522 4-182 (182)
259 CHL00131 ycf16 sulfate ABC tra 100.0 1.9E-40 4.2E-45 347.3 23.3 217 308-531 7-239 (252)
260 PRK09580 sufC cysteine desulfu 100.0 2.9E-40 6.4E-45 345.0 23.7 218 309-531 2-233 (248)
261 PRK09544 znuC high-affinity zi 100.0 2.6E-40 5.7E-45 346.9 23.3 208 308-542 4-217 (251)
262 cd03223 ABCD_peroxisomal_ALDP 100.0 1.5E-40 3.3E-45 327.5 20.0 164 309-521 1-164 (166)
263 PRK15439 autoinducer 2 ABC tra 100.0 4.1E-40 8.9E-45 378.4 25.4 212 308-533 11-229 (510)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.1E-40 6.7E-45 334.7 21.6 185 309-532 1-192 (200)
265 PRK03695 vitamin B12-transport 100.0 3.2E-40 7E-45 345.5 22.0 209 310-533 2-222 (248)
266 PRK13549 xylose transporter AT 100.0 2.9E-40 6.4E-45 379.3 23.6 216 308-533 5-232 (506)
267 PRK10762 D-ribose transporter 100.0 4.5E-40 9.8E-45 377.3 23.6 215 308-532 4-229 (501)
268 PRK09700 D-allose transporter 100.0 3.5E-40 7.7E-45 379.0 22.7 216 308-533 5-234 (510)
269 COG0411 LivG ABC-type branched 100.0 1E-40 2.2E-45 338.0 15.9 220 309-535 5-241 (250)
270 COG1123 ATPase components of v 100.0 3.3E-40 7.1E-45 369.7 20.9 225 308-542 280-529 (539)
271 PRK10261 glutathione transport 100.0 5.7E-40 1.2E-44 385.2 23.9 216 308-534 313-554 (623)
272 TIGR02770 nickel_nikD nickel i 100.0 3E-40 6.5E-45 341.7 19.0 199 326-534 1-216 (230)
273 cd03231 ABC_CcmA_heme_exporter 100.0 7.8E-40 1.7E-44 332.0 20.9 194 309-517 1-198 (201)
274 cd03214 ABC_Iron-Siderophores_ 100.0 3.5E-40 7.6E-45 328.8 17.9 177 310-526 1-180 (180)
275 cd03267 ABC_NatA_like Similar 100.0 7.8E-40 1.7E-44 340.1 20.7 195 324-526 34-236 (236)
276 TIGR01184 ntrCD nitrate transp 100.0 3.7E-40 8E-45 341.2 17.9 193 327-531 1-202 (230)
277 PRK13540 cytochrome c biogenes 100.0 1.1E-39 2.4E-44 330.5 20.4 193 309-516 2-198 (200)
278 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-39 3.4E-44 319.3 20.8 159 309-524 1-162 (163)
279 PRK10982 galactose/methyl gala 100.0 1.3E-39 2.8E-44 372.6 22.4 212 311-532 1-222 (491)
280 PRK10938 putative molybdenum t 100.0 9.4E-40 2E-44 373.7 21.1 211 309-534 4-225 (490)
281 PRK13538 cytochrome c biogenes 100.0 1.7E-39 3.7E-44 330.0 20.5 194 309-517 2-202 (204)
282 COG0444 DppD ABC-type dipeptid 100.0 1.6E-39 3.4E-44 342.1 20.2 227 309-543 2-255 (316)
283 PRK11288 araG L-arabinose tran 100.0 2.9E-39 6.3E-44 370.7 23.8 211 308-528 4-224 (501)
284 TIGR01257 rim_protein retinal- 100.0 4.3E-37 9.4E-42 388.0 45.0 219 307-534 1936-2160(2272)
285 PRK10261 glutathione transport 100.0 1.3E-39 2.9E-44 382.1 20.8 220 308-534 12-259 (623)
286 PRK15134 microcin C ABC transp 100.0 2.2E-39 4.7E-44 374.1 21.1 219 308-534 275-516 (529)
287 TIGR02633 xylG D-xylose ABC tr 100.0 4.1E-39 8.9E-44 369.3 23.2 214 309-532 2-229 (500)
288 PRK13543 cytochrome c biogenes 100.0 8.9E-39 1.9E-43 327.3 22.0 195 308-519 11-212 (214)
289 PRK13539 cytochrome c biogenes 100.0 5.9E-39 1.3E-43 327.0 20.5 193 309-519 3-200 (207)
290 PRK15134 microcin C ABC transp 100.0 7.2E-39 1.6E-43 369.7 23.0 219 308-534 5-247 (529)
291 TIGR01189 ccmA heme ABC export 100.0 7.8E-39 1.7E-43 323.7 19.8 192 309-516 1-197 (198)
292 PRK13546 teichoic acids export 100.0 2.6E-38 5.5E-43 334.1 24.4 215 308-542 4-241 (264)
293 TIGR03269 met_CoM_red_A2 methy 100.0 7.1E-39 1.5E-43 369.0 21.9 219 308-533 279-517 (520)
294 PRK13549 xylose transporter AT 100.0 5.9E-39 1.3E-43 368.6 21.0 218 308-532 259-493 (506)
295 TIGR02324 CP_lyasePhnL phospho 100.0 7.6E-39 1.7E-43 329.5 19.0 202 309-517 2-222 (224)
296 COG4619 ABC-type uncharacteriz 100.0 1.8E-39 3.8E-44 310.1 12.7 193 322-524 14-214 (223)
297 TIGR03269 met_CoM_red_A2 methy 100.0 9E-39 2E-43 368.2 21.1 215 309-533 1-258 (520)
298 COG1123 ATPase components of v 100.0 9E-39 2E-43 358.1 20.1 224 308-540 5-252 (539)
299 COG4559 ABC-type hemin transpo 100.0 1.2E-38 2.6E-43 315.1 18.5 212 309-534 2-231 (259)
300 TIGR01257 rim_protein retinal- 100.0 2.3E-38 4.9E-43 399.5 25.2 219 307-534 927-1150(2272)
301 COG4598 HisP ABC-type histidin 100.0 4.9E-39 1.1E-43 309.8 14.0 213 308-534 6-242 (256)
302 TIGR00955 3a01204 The Eye Pigm 100.0 7.4E-39 1.6E-43 375.4 18.5 203 323-533 37-256 (617)
303 PLN03211 ABC transporter G-25; 100.0 2.5E-38 5.4E-43 372.0 22.5 202 323-533 80-296 (659)
304 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-38 4.8E-43 326.5 18.9 186 332-534 1-202 (223)
305 PRK13541 cytochrome c biogenes 100.0 3.2E-38 6.8E-43 318.6 19.3 188 309-515 2-193 (195)
306 TIGR01166 cbiO cobalt transpor 100.0 3.2E-38 7E-43 317.0 18.7 174 323-507 4-189 (190)
307 PRK10535 macrolide transporter 100.0 7.2E-38 1.6E-42 368.9 23.1 218 308-532 4-231 (648)
308 PRK09700 D-allose transporter 100.0 4E-38 8.7E-43 362.0 20.5 211 308-530 265-495 (510)
309 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.6E-38 1.9E-42 322.4 20.5 196 309-526 23-224 (224)
310 TIGR02633 xylG D-xylose ABC tr 100.0 5.7E-38 1.2E-42 359.9 20.7 221 308-530 257-489 (500)
311 COG4608 AppF ABC-type oligopep 100.0 3.8E-38 8.3E-43 325.3 17.2 193 308-540 4-207 (268)
312 COG1129 MglA ABC-type sugar tr 100.0 1.3E-37 2.7E-42 346.9 22.3 208 308-527 8-228 (500)
313 COG4181 Predicted ABC-type tra 100.0 3.4E-38 7.4E-43 302.1 15.1 207 308-525 6-227 (228)
314 PRK13545 tagH teichoic acids e 100.0 3.4E-37 7.4E-42 346.7 25.2 209 308-540 21-239 (549)
315 COG4172 ABC-type uncharacteriz 100.0 2.2E-37 4.7E-42 329.3 21.4 222 308-540 276-524 (534)
316 PRK10762 D-ribose transporter 100.0 1.4E-37 3E-42 356.8 20.6 209 308-531 257-482 (501)
317 PRK15064 ABC transporter ATP-b 100.0 2.1E-37 4.5E-42 357.6 21.2 207 309-533 2-242 (530)
318 PRK11288 araG L-arabinose tran 100.0 1.7E-37 3.7E-42 356.0 20.2 211 308-532 257-484 (501)
319 COG4604 CeuD ABC-type enteroch 100.0 5.3E-38 1.2E-42 307.1 13.4 212 309-534 2-226 (252)
320 PRK11819 putative ABC transpor 100.0 4.6E-37 9.9E-42 356.6 22.9 208 308-533 6-250 (556)
321 COG4525 TauB ABC-type taurine 100.0 2E-37 4.4E-42 302.5 16.2 204 309-529 4-220 (259)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-37 6.5E-42 357.9 20.7 208 308-533 4-248 (552)
323 PRK15064 ABC transporter ATP-b 100.0 5.6E-37 1.2E-41 354.1 22.8 201 308-534 319-526 (530)
324 TIGR01187 potA spermidine/putr 100.0 4.5E-37 9.8E-42 334.0 18.9 180 342-534 1-191 (325)
325 COG4161 ArtP ABC-type arginine 100.0 2.6E-37 5.6E-42 293.3 13.7 212 308-533 2-230 (242)
326 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-36 3.2E-41 381.7 24.8 213 308-531 759-991 (1394)
327 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.3E-36 2.8E-41 318.0 18.8 192 316-532 1-206 (246)
328 PRK15439 autoinducer 2 ABC tra 100.0 9.1E-37 2E-41 350.7 19.1 211 308-533 268-492 (510)
329 PRK15177 Vi polysaccharide exp 100.0 2E-36 4.3E-41 310.1 19.4 191 326-539 2-198 (213)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.2E-36 4.7E-41 291.3 18.3 143 309-521 1-144 (144)
331 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.8E-37 1.5E-41 321.6 15.5 200 312-526 4-220 (255)
332 PRK10938 putative molybdenum t 100.0 1.5E-36 3.2E-41 347.4 18.8 205 308-526 260-485 (490)
333 COG4148 ModC ABC-type molybdat 100.0 9.2E-37 2E-41 312.0 14.5 197 328-535 15-220 (352)
334 COG3845 ABC-type uncharacteriz 100.0 4.5E-36 9.7E-41 328.4 20.1 212 308-526 4-222 (501)
335 COG4152 ABC-type uncharacteriz 100.0 1.6E-36 3.5E-41 305.4 15.0 213 308-534 2-220 (300)
336 PRK10982 galactose/methyl gala 100.0 8E-36 1.7E-40 341.5 21.3 211 308-530 250-477 (491)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.5E-35 1.2E-39 339.0 22.9 199 308-533 322-531 (552)
338 PRK11819 putative ABC transpor 100.0 5.9E-35 1.3E-39 339.0 23.1 200 308-534 324-534 (556)
339 cd00267 ABC_ATPase ABC (ATP-bi 100.0 8.5E-35 1.8E-39 283.4 18.5 154 311-521 2-157 (157)
340 KOG0060 Long-chain acyl-CoA tr 100.0 9.7E-33 2.1E-37 305.1 36.9 416 92-519 186-641 (659)
341 PRK10636 putative ABC transpor 100.0 8.5E-35 1.8E-39 342.1 22.0 198 308-532 312-516 (638)
342 PRK11147 ABC transporter ATPas 100.0 1.2E-34 2.5E-39 341.2 21.4 198 308-532 319-527 (635)
343 PLN03073 ABC transporter F fam 100.0 1.4E-34 3.1E-39 342.2 22.2 198 308-531 508-712 (718)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 7.8E-35 1.7E-39 289.6 16.4 151 312-529 4-159 (177)
345 PRK13409 putative ATPase RIL; 100.0 1.5E-34 3.2E-39 336.2 20.5 193 308-529 340-538 (590)
346 PLN03140 ABC transporter G fam 100.0 3.8E-34 8.3E-39 359.2 24.5 213 308-530 867-1107(1470)
347 PRK10636 putative ABC transpor 100.0 5.6E-34 1.2E-38 335.2 23.4 207 309-533 2-236 (638)
348 COG1119 ModF ABC-type molybden 100.0 3E-34 6.6E-39 290.9 16.6 210 307-527 30-256 (257)
349 COG1101 PhnK ABC-type uncharac 100.0 4.1E-34 8.8E-39 283.5 16.5 203 323-527 18-232 (263)
350 COG4172 ABC-type uncharacteriz 100.0 8.8E-34 1.9E-38 301.9 18.5 229 308-544 6-260 (534)
351 cd03238 ABC_UvrA The excision 100.0 1.5E-33 3.4E-38 280.1 17.5 156 323-522 7-166 (176)
352 TIGR00956 3a01205 Pleiotropic 100.0 9.3E-34 2E-38 356.5 19.9 206 324-533 74-300 (1394)
353 PRK11147 ABC transporter ATPas 100.0 6.9E-33 1.5E-37 326.2 24.3 205 309-533 4-243 (635)
354 COG4167 SapF ABC-type antimicr 100.0 2E-33 4.3E-38 271.8 14.2 227 309-545 5-253 (267)
355 COG4674 Uncharacterized ABC-ty 100.0 5.3E-33 1.2E-37 271.7 16.4 213 308-534 5-236 (249)
356 PRK13409 putative ATPase RIL; 100.0 1.5E-33 3.2E-38 327.8 14.1 193 312-520 77-287 (590)
357 PLN03140 ABC transporter G fam 100.0 3.4E-33 7.3E-38 350.7 18.3 208 323-533 177-427 (1470)
358 COG1134 TagH ABC-type polysacc 100.0 2.7E-32 5.9E-37 277.0 19.8 187 324-534 40-237 (249)
359 COG0488 Uup ATPase components 100.0 9E-32 1.9E-36 306.6 21.7 208 308-534 3-241 (530)
360 PLN03073 ABC transporter F fam 100.0 9.2E-32 2E-36 318.4 20.3 220 307-533 176-431 (718)
361 COG4586 ABC-type uncharacteriz 100.0 3E-32 6.5E-37 278.6 13.2 205 324-538 37-251 (325)
362 COG4136 ABC-type uncharacteriz 100.0 6.9E-32 1.5E-36 253.7 14.5 194 308-517 2-207 (213)
363 PF00005 ABC_tran: ABC transpo 100.0 4.4E-32 9.5E-37 257.3 10.2 136 327-475 1-137 (137)
364 KOG0061 Transporter, ABC super 100.0 2.6E-31 5.7E-36 309.8 18.9 217 307-533 24-260 (613)
365 COG0396 sufC Cysteine desulfur 100.0 1E-30 2.2E-35 262.5 19.5 214 308-533 3-233 (251)
366 cd03270 ABC_UvrA_I The excisio 100.0 7.3E-30 1.6E-34 263.9 16.3 191 323-526 7-226 (226)
367 KOG0059 Lipid exporter ABCA1 a 100.0 5E-30 1.1E-34 310.8 16.6 215 307-534 563-788 (885)
368 COG4107 PhnK ABC-type phosphon 100.0 1.7E-29 3.7E-34 242.7 15.8 224 308-542 6-251 (258)
369 COG0488 Uup ATPase components 100.0 5.5E-29 1.2E-33 283.8 19.3 201 307-533 320-525 (530)
370 cd03271 ABC_UvrA_II The excisi 100.0 4.5E-29 9.7E-34 262.4 15.2 193 325-528 9-261 (261)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 3E-29 6.4E-34 254.1 13.0 164 328-519 14-190 (197)
372 COG4133 CcmA ABC-type transpor 100.0 3.5E-29 7.5E-34 244.4 12.9 186 309-509 3-194 (209)
373 KOG0064 Peroxisomal long-chain 100.0 1.6E-25 3.5E-30 244.8 42.3 435 60-516 183-680 (728)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.1E-28 4.6E-33 254.9 11.4 192 308-518 3-234 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 5.2E-28 1.1E-32 247.7 11.3 192 308-522 5-211 (213)
376 COG4778 PhnL ABC-type phosphon 99.9 1.2E-27 2.5E-32 229.5 8.1 202 308-519 4-227 (235)
377 cd03240 ABC_Rad50 The catalyti 99.9 3.6E-26 7.9E-31 232.8 12.7 163 330-519 16-197 (204)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.6E-26 5.6E-31 240.9 11.8 181 337-518 25-242 (251)
379 COG1129 MglA ABC-type sugar tr 99.9 2.1E-25 4.6E-30 249.2 17.7 215 308-530 263-487 (500)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.1E-26 2.5E-31 237.8 6.4 184 308-519 5-204 (212)
381 COG4138 BtuD ABC-type cobalami 99.9 3.9E-26 8.4E-31 219.9 6.8 207 309-534 4-222 (248)
382 KOG0927 Predicted transporter 99.9 4.6E-26 9.9E-31 250.9 8.1 197 308-529 389-592 (614)
383 PRK00349 uvrA excinuclease ABC 99.9 6.2E-25 1.3E-29 264.5 18.4 102 435-536 818-930 (943)
384 PRK00635 excinuclease ABC subu 99.9 2.8E-24 6.1E-29 268.6 20.0 211 308-534 600-907 (1809)
385 KOG0065 Pleiotropic drug resis 99.9 8.6E-25 1.9E-29 261.3 12.8 201 322-532 802-1020(1391)
386 PF00664 ABC_membrane: ABC tra 99.9 1.2E-21 2.5E-26 201.1 34.2 220 43-263 54-274 (275)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.4E-24 3.1E-29 227.3 8.5 202 308-519 3-233 (247)
388 COG3845 ABC-type uncharacteriz 99.9 1.2E-22 2.6E-27 223.2 20.9 216 307-530 256-489 (501)
389 TIGR00630 uvra excinuclease AB 99.9 6E-23 1.3E-27 247.0 18.8 97 435-531 816-923 (924)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.7E-22 3.7E-27 204.9 13.0 168 327-521 12-192 (198)
391 KOG0927 Predicted transporter 99.9 3.3E-22 7.2E-27 220.6 16.3 218 305-534 72-310 (614)
392 KOG0062 ATPase component of AB 99.9 6.3E-22 1.4E-26 217.3 12.6 194 307-524 361-559 (582)
393 KOG0062 ATPase component of AB 99.9 9.7E-23 2.1E-27 223.7 5.6 199 306-534 78-286 (582)
394 COG1245 Predicted ATPase, RNas 99.9 1.6E-21 3.5E-26 211.1 14.6 169 326-519 351-531 (591)
395 KOG0066 eIF2-interacting prote 99.9 2.9E-21 6.3E-26 207.1 13.6 187 308-519 586-776 (807)
396 cd03239 ABC_SMC_head The struc 99.8 8.4E-21 1.8E-25 189.4 12.6 85 429-519 83-172 (178)
397 COG4170 SapD ABC-type antimicr 99.8 2.6E-20 5.6E-25 184.3 12.5 221 309-540 4-256 (330)
398 KOG0065 Pleiotropic drug resis 99.8 3.6E-20 7.7E-25 222.1 14.8 206 323-533 127-351 (1391)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 3.7E-20 8E-25 187.9 10.9 145 327-526 17-172 (200)
400 KOG2355 Predicted ABC-type tra 99.8 4.2E-19 9.2E-24 175.4 15.1 210 306-532 11-236 (291)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.8 7.3E-20 1.6E-24 187.7 9.6 181 328-521 15-211 (213)
402 cd03241 ABC_RecN RecN ATPase i 99.8 2.5E-19 5.5E-24 190.7 13.4 77 446-522 170-250 (276)
403 COG1245 Predicted ATPase, RNas 99.8 3.3E-19 7.3E-24 193.3 9.7 190 313-518 79-287 (591)
404 cd01128 rho_factor Transcripti 99.8 5.5E-19 1.2E-23 184.9 11.0 197 332-545 11-229 (249)
405 COG0178 UvrA Excinuclease ATPa 99.8 3.9E-18 8.6E-23 195.8 15.6 105 435-539 810-925 (935)
406 PRK00635 excinuclease ABC subu 99.8 3.1E-18 6.8E-23 214.9 15.2 209 326-535 1505-1798(1809)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 8.1E-18 1.7E-22 165.3 11.5 136 330-519 14-155 (162)
408 COG2401 ABC-type ATPase fused 99.7 1.4E-17 3E-22 178.9 13.0 198 304-523 353-588 (593)
409 cd03242 ABC_RecF RecF is a rec 99.7 4.3E-17 9.4E-22 173.1 14.8 192 327-522 12-269 (270)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.7 9E-18 2E-22 173.3 7.7 152 324-527 17-175 (222)
411 TIGR00630 uvra excinuclease AB 99.7 1.1E-16 2.5E-21 193.1 13.4 100 435-534 475-584 (924)
412 PRK00349 uvrA excinuclease ABC 99.7 1.3E-16 2.8E-21 193.0 13.0 137 396-534 434-586 (943)
413 cd03283 ABC_MutS-like MutS-lik 99.7 1.1E-16 2.4E-21 162.5 8.3 144 324-517 14-163 (199)
414 cd03243 ABC_MutS_homologs The 99.7 9.6E-17 2.1E-21 163.1 6.4 153 329-530 21-176 (202)
415 cd00820 PEPCK_HprK Phosphoenol 99.6 5.1E-16 1.1E-20 141.4 6.4 76 324-407 2-77 (107)
416 TIGR02858 spore_III_AA stage I 99.6 1.6E-15 3.4E-20 160.7 9.6 142 338-532 112-268 (270)
417 KOG0066 eIF2-interacting prote 99.6 1.3E-15 2.8E-20 164.2 8.3 198 308-531 264-497 (807)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.4E-14 3.1E-19 147.6 9.7 139 323-510 15-156 (204)
419 KOG0063 RNAse L inhibitor, ABC 99.5 2.9E-14 6.4E-19 154.0 11.7 193 316-534 343-549 (592)
420 TIGR00606 rad50 rad50. This fa 99.5 2.3E-14 4.9E-19 181.7 12.2 118 396-517 1153-1288(1311)
421 cd03284 ABC_MutS1 MutS1 homolo 99.5 1.8E-14 3.9E-19 148.2 9.0 157 324-531 18-179 (216)
422 PRK00064 recF recombination pr 99.5 3.7E-13 8.1E-18 148.8 17.0 76 445-522 272-359 (361)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 4.3E-14 9.2E-19 145.2 8.2 72 446-517 136-211 (220)
424 PHA02562 46 endonuclease subun 99.4 1.6E-13 3.5E-18 160.0 7.3 91 431-522 447-555 (562)
425 PRK07721 fliI flagellum-specif 99.4 1E-11 2.2E-16 139.7 17.6 176 323-530 145-340 (438)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.4 2.7E-12 5.8E-17 131.9 10.6 135 325-511 17-160 (213)
427 PTZ00132 GTP-binding nuclear p 99.3 9.9E-13 2.1E-17 134.6 5.3 145 339-493 11-204 (215)
428 smart00534 MUTSac ATPase domai 99.3 1.1E-12 2.4E-17 131.7 4.4 80 442-522 57-139 (185)
429 TIGR00634 recN DNA repair prot 99.3 8.4E-12 1.8E-16 145.7 9.0 77 445-521 439-519 (563)
430 TIGR01069 mutS2 MutS2 family p 99.2 6.6E-12 1.4E-16 150.5 7.0 144 308-507 295-447 (771)
431 PRK10869 recombination and rep 99.2 1.8E-11 3.9E-16 142.2 9.1 76 446-521 430-509 (553)
432 PRK14079 recF recombination pr 99.2 1.3E-10 2.9E-15 128.0 14.7 76 446-526 263-347 (349)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.2 8.4E-11 1.8E-15 121.5 10.8 138 324-510 18-159 (222)
434 PRK13695 putative NTPase; Prov 99.2 2.7E-11 5.8E-16 120.2 6.1 81 442-525 74-156 (174)
435 KOG0063 RNAse L inhibitor, ABC 99.2 5.3E-11 1.2E-15 129.1 8.1 171 335-518 98-287 (592)
436 COG0178 UvrA Excinuclease ATPa 99.1 2.1E-10 4.5E-15 133.0 12.3 137 398-535 428-579 (935)
437 PRK08533 flagellar accessory p 99.1 3.1E-10 6.6E-15 118.1 11.9 157 309-518 8-184 (230)
438 TIGR02788 VirB11 P-type DNA tr 99.1 1.2E-10 2.5E-15 126.3 7.7 142 330-532 137-280 (308)
439 PRK00409 recombination and DNA 99.1 1.4E-10 3.1E-15 139.4 8.4 144 331-523 320-468 (782)
440 TIGR00618 sbcc exonuclease Sbc 99.0 5E-10 1.1E-14 139.7 9.3 78 443-520 947-1036(1042)
441 PRK01156 chromosome segregatio 99.0 5.5E-10 1.2E-14 137.5 9.3 76 443-518 798-883 (895)
442 PRK03918 chromosome segregatio 99.0 5.2E-10 1.1E-14 137.4 8.7 75 444-518 786-867 (880)
443 cd01124 KaiC KaiC is a circadi 99.0 1.6E-09 3.5E-14 107.9 9.3 85 435-519 60-164 (187)
444 TIGR02168 SMC_prok_B chromosom 99.0 6.8E-10 1.5E-14 139.6 6.8 75 443-517 1086-1164(1179)
445 TIGR03238 dnd_assoc_3 dnd syst 98.9 4.2E-10 9.1E-15 125.9 4.3 67 325-394 20-87 (504)
446 PRK13830 conjugal transfer pro 98.9 8.4E-09 1.8E-13 125.4 14.1 67 461-527 649-727 (818)
447 PF13304 AAA_21: AAA domain; P 98.9 3.8E-09 8.2E-14 107.2 9.3 64 445-508 235-302 (303)
448 cd03286 ABC_MSH6_euk MutS6 hom 98.9 3.7E-09 7.9E-14 109.1 9.1 138 324-510 17-158 (218)
449 PRK06793 fliI flagellum-specif 98.9 3.5E-09 7.6E-14 118.7 9.3 169 308-528 130-306 (432)
450 TIGR00767 rho transcription te 98.9 1.5E-08 3.1E-13 112.0 13.3 82 277-364 103-195 (415)
451 cd01120 RecA-like_NTPases RecA 98.9 1.3E-08 2.8E-13 97.7 11.3 128 339-507 1-139 (165)
452 TIGR02169 SMC_prok_A chromosom 98.9 3.1E-09 6.7E-14 133.9 7.8 75 445-519 1073-1151(1164)
453 cd01131 PilT Pilus retraction 98.9 2.9E-09 6.4E-14 108.2 6.1 119 339-518 3-122 (198)
454 PRK10733 hflB ATP-dependent me 98.8 6.3E-10 1.4E-14 131.7 1.0 165 165-362 38-210 (644)
455 smart00382 AAA ATPases associa 98.8 8.6E-08 1.9E-12 88.4 14.0 117 336-504 1-125 (148)
456 PRK10246 exonuclease subunit S 98.8 1.4E-08 3.1E-13 126.5 9.0 78 442-519 945-1032(1047)
457 PRK02224 chromosome segregatio 98.7 2.1E-08 4.5E-13 123.4 7.5 76 445-520 780-869 (880)
458 PRK00300 gmk guanylate kinase; 98.7 2.4E-08 5.2E-13 101.3 6.4 78 335-420 3-92 (205)
459 PRK06067 flagellar accessory p 98.6 1.6E-07 3.5E-12 97.7 11.3 148 333-519 21-187 (234)
460 PRK06995 flhF flagellar biosyn 98.6 6.8E-08 1.5E-12 109.9 7.4 146 327-504 246-401 (484)
461 PRK06002 fliI flagellum-specif 98.6 9E-08 1.9E-12 107.7 8.0 85 307-394 138-229 (450)
462 PRK11098 microcin B17 transpor 98.6 0.00025 5.3E-09 79.6 34.1 238 36-290 144-395 (409)
463 PRK12369 putative transporter; 98.5 0.00033 7.2E-09 76.7 34.0 240 36-289 69-320 (326)
464 PRK07196 fliI flagellum-specif 98.5 9.1E-08 2E-12 107.5 5.0 83 324-407 143-235 (434)
465 TIGR02655 circ_KaiC circadian 98.4 3.8E-08 8.2E-13 113.2 0.4 156 333-518 17-190 (484)
466 cd01130 VirB11-like_ATPase Typ 98.4 1.5E-07 3.2E-12 94.6 4.1 79 326-407 14-95 (186)
467 COG3910 Predicted ATPase [Gene 98.4 2E-06 4.3E-11 85.4 11.7 85 445-531 128-214 (233)
468 TIGR00611 recf recF protein. A 98.4 3.2E-07 7E-12 101.8 5.8 62 446-509 275-345 (365)
469 cd01125 repA Hexameric Replica 98.4 6.7E-07 1.4E-11 93.4 7.8 46 460-506 107-160 (239)
470 PF06472 ABC_membrane_2: ABC t 98.4 0.00027 5.9E-09 75.8 27.7 182 36-218 72-257 (281)
471 TIGR01420 pilT_fam pilus retra 98.4 7.3E-07 1.6E-11 98.3 7.8 123 334-517 119-242 (343)
472 TIGR01026 fliI_yscN ATPase Fli 98.4 2.7E-06 5.9E-11 96.3 12.1 182 323-531 150-346 (440)
473 PF09818 ABC_ATPase: Predicted 98.3 3.4E-06 7.4E-11 93.7 11.9 171 314-522 227-416 (448)
474 cd02023 UMPK Uridine monophosp 98.3 9.5E-07 2.1E-11 89.4 6.6 106 339-479 1-113 (198)
475 PRK01889 GTPase RsgA; Reviewed 98.3 4.1E-07 8.9E-12 100.7 4.3 81 326-409 184-264 (356)
476 TIGR00101 ureG urease accessor 98.3 9.7E-07 2.1E-11 89.9 6.4 105 339-451 3-108 (199)
477 PRK13891 conjugal transfer pro 98.3 7.7E-06 1.7E-10 100.3 15.1 54 457-510 680-735 (852)
478 TIGR03881 KaiC_arch_4 KaiC dom 98.2 1.5E-06 3.3E-11 89.8 6.5 64 327-394 9-77 (229)
479 PRK08149 ATP synthase SpaL; Va 98.2 1.3E-06 2.8E-11 98.1 6.0 70 323-393 138-214 (428)
480 PRK10078 ribose 1,5-bisphospho 98.2 1.9E-06 4.2E-11 86.5 5.4 56 337-395 2-57 (186)
481 TIGR02524 dot_icm_DotB Dot/Icm 98.2 2.8E-06 6.1E-11 94.0 6.8 88 335-423 132-234 (358)
482 TIGR02680 conserved hypothetic 98.1 4E-06 8.6E-11 107.1 7.5 61 443-505 1244-1316(1353)
483 PRK09825 idnK D-gluconate kina 98.1 2.1E-06 4.6E-11 85.7 4.0 53 336-394 2-55 (176)
484 PRK13898 type IV secretion sys 98.1 0.0001 2.2E-09 90.2 18.2 46 329-374 438-483 (800)
485 PLN03210 Resistant to P. syrin 98.1 1.4E-05 3E-10 101.3 11.1 43 330-372 200-243 (1153)
486 PRK10416 signal recognition pa 98.1 1.9E-05 4.1E-10 86.2 10.4 62 335-396 112-179 (318)
487 COG0419 SbcC ATPase involved i 98.0 7.2E-06 1.6E-10 101.4 7.8 78 443-520 812-898 (908)
488 PRK06315 type III secretion sy 98.0 7.5E-06 1.6E-10 92.5 6.6 83 324-407 152-252 (442)
489 TIGR00235 udk uridine kinase. 98.0 3.3E-06 7.1E-11 86.3 3.2 43 335-398 4-46 (207)
490 TIGR02322 phosphon_PhnN phosph 98.0 1.1E-05 2.3E-10 80.3 6.7 62 337-399 1-78 (179)
491 PLN02796 D-glycerate 3-kinase 98.0 2.5E-06 5.4E-11 93.1 2.1 61 325-385 80-151 (347)
492 PRK14723 flhF flagellar biosyn 98.0 1.5E-05 3.2E-10 95.1 8.0 41 326-366 174-214 (767)
493 TIGR00152 dephospho-CoA kinase 98.0 8.3E-06 1.8E-10 82.0 5.0 69 450-520 61-133 (188)
494 cd00009 AAA The AAA+ (ATPases 98.0 3.9E-05 8.5E-10 71.4 9.3 54 452-506 72-131 (151)
495 cd01123 Rad51_DMC1_radA Rad51_ 97.9 5.9E-05 1.3E-09 78.1 10.4 79 334-418 16-101 (235)
496 TIGR02903 spore_lon_C ATP-depe 97.9 3.6E-05 7.7E-10 91.2 9.3 107 337-491 175-291 (615)
497 PF05992 SbmA_BacA: SbmA/BacA- 97.9 0.064 1.4E-06 57.9 32.2 236 36-287 62-310 (315)
498 PTZ00035 Rad51 protein; Provis 97.8 3.9E-05 8.4E-10 84.4 8.3 80 333-418 114-200 (337)
499 PRK00454 engB GTP-binding prot 97.8 6.2E-06 1.3E-10 82.5 1.8 52 439-494 140-194 (196)
500 PRK15494 era GTPase Era; Provi 97.8 1.1E-05 2.3E-10 88.9 3.7 56 303-360 13-75 (339)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-107 Score=920.05 Aligned_cols=516 Identities=38% Similarity=0.589 Sum_probs=493.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004513 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG 110 (747)
Q Consensus 31 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~ 110 (747)
...+.+..+.++..++.+++.+++..+++++..++|..+|+++++++++|||. +.+||++||++.|+..+.+.++..+.
T Consensus 189 ~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls 267 (716)
T KOG0058|consen 189 RACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLS 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHH
Confidence 34455556666677888999999999999999999999999999999999999 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 004513 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (747)
Q Consensus 111 ~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~ 190 (747)
..+.+++..++++++||+++|+|++++++.+|+++++..++++++++.+++.|++.+++++..+|.++++||||+|+.|.
T Consensus 268 ~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~ 347 (716)
T KOG0058|consen 268 DGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEE 347 (716)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270 (747)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~ 270 (747)
.+.++|.+..++..+...+.....+++++...+...+..+.++++|++++..|.+|.|.++++++|......++..+...
T Consensus 348 ~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ 427 (716)
T KOG0058|consen 348 QEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSF 427 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC-CCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCC
Q 004513 271 FYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG 349 (747)
Q Consensus 271 ~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~-~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsG 349 (747)
+..+.++..|.+|++|+++++|..+.. +...| ...|.|+|+||+|+||.+++.+||+|+||+|+|||+||+|||||+|
T Consensus 428 ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsG 506 (716)
T KOG0058|consen 428 YSELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSG 506 (716)
T ss_pred HHHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCC
Confidence 999999999999999999998876544 54444 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Q 004513 350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTF 428 (747)
Q Consensus 350 KSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~ 428 (747)
|||++++|++||+|++|+|.+||+||++++..+||++||+|.|||.||++||+|||.||. .+++|++.+|++.|++|+|
T Consensus 507 KSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~F 586 (716)
T KOG0058|consen 507 KSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEF 586 (716)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred HHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchh
Q 004513 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (747)
Q Consensus 429 i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i 508 (747)
|..+|+||||.|||+|.+|||||||||||||||++||.||||||||||||+++|..+++++.+..+++|||+|+|||+++
T Consensus 587 I~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 587 ITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTV 666 (716)
T ss_pred HHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEeCceEeEecChHHHhhcc-hHHHHHHHhHhhh
Q 004513 509 RNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEEAA 548 (747)
Q Consensus 509 ~~aD~I~vl~~G~ive~Gt~~eL~~~~-~~~~~l~~~~~~~ 548 (747)
++||+|+|+++|+|+|.|+|+||++.. |.|+++++.|...
T Consensus 667 ~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 667 RHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred hhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 999999999999999999999999986 8999999887643
No 2
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-106 Score=952.27 Aligned_cols=520 Identities=52% Similarity=0.876 Sum_probs=500.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 004513 28 WLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSE 107 (747)
Q Consensus 28 ~l~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~ 107 (747)
....+++++++++++.++..|++..||.+.++|+..++|.++++++|+++++|||+ +.+|++.+|+++|++.+++.+++
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~-~~~g~~~~~l~~d~~~I~d~~ge 147 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDT-NSTGELVTRLSDDIELIQDAIGE 147 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeec-ccccceEEEecCcHHHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999999999 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 004513 108 KVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFT 187 (747)
Q Consensus 108 ~l~~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~ 187 (747)
.++.+++.+.++++++++.|++.|+|+++++.+.|++++...++.+.+.+...+.+..++++.+.++|++.++|||.+|+
T Consensus 148 Kvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~ 227 (1228)
T KOG0055|consen 148 KVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFN 227 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHH
Q 004513 188 NETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQA 267 (747)
Q Consensus 188 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~ 267 (747)
.|+.+.++|.+.+....+.+.+...+.++..++.+++.++++++.+|+|+.++..+..++|.+++.+++++.....+++.
T Consensus 228 gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 228 GEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC--CCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCC
Q 004513 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYD--GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGR 345 (747)
Q Consensus 268 ~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~ 345 (747)
...+..+.++++|+.+|++.++..++.+... +.......|.|+|+||+|+||.+++.++|+|+||+|++|+++|||||
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~ 387 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGP 387 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECC
Confidence 9999999999999999999999877644322 22333467899999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHH
Q 004513 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAH 424 (747)
Q Consensus 346 sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~ 424 (747)
|||||||++++|.|+|+|++|+|+|||.|+++++.+|+|++||+|+|+|.||++||+|||.||+ +++++++.+|++.++
T Consensus 388 SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~an 467 (1228)
T KOG0055|consen 388 SGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAAN 467 (1228)
T ss_pred CCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 004513 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (747)
Q Consensus 425 l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~ 504 (747)
+++||..||+||+|.|||+|.+|||||||||||||||++||+||||||||||||+++|+.++++|++..+|||+|+||||
T Consensus 468 a~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHR 547 (1228)
T KOG0055|consen 468 AHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHR 547 (1228)
T ss_pred HHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhHhhh
Q 004513 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA 548 (747)
Q Consensus 505 l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~~~ 548 (747)
|+++++||+|+||++|+|+|.|+|+||++.+|.|.++++.|+..
T Consensus 548 LStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~ 591 (1228)
T KOG0055|consen 548 LSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELE 591 (1228)
T ss_pred hhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988754
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-102 Score=921.92 Aligned_cols=516 Identities=41% Similarity=0.669 Sum_probs=497.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004513 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG 110 (747)
Q Consensus 31 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~ 110 (747)
.|++++++++++.++..+++.+++...|+++..++|..+|+++++++++|||..+++|.+.+|+.+|...++..+...+.
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHH
Confidence 47888899999999999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 004513 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (747)
Q Consensus 111 ~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~ 190 (747)
.+++++..+++++++.|+++|+|+++++++.|++++..+...+++.....+.++.+.++++.+.|++++||||++|+.|+
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~ 867 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEE 867 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270 (747)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~ 270 (747)
++.+.|.+.++...+...+.+.+.++.+++.+.+.++..++.+|+|++++..|.++..+++..+..+.+....+.+....
T Consensus 868 ~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~ 947 (1228)
T KOG0055|consen 868 KFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSY 947 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCC
Q 004513 271 FYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (747)
Q Consensus 271 ~~~~~~~~~s~~Ri~~~l~~~~~~~~~--~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGs 348 (747)
++++.+|+.|+.++++++++++..+.. .+...+..+|+|+++||+|+||.+++.+||+|+||+|++|+++||||||||
T Consensus 948 ~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGs 1027 (1228)
T KOG0055|consen 948 APDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGS 1027 (1228)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCC
Confidence 999999999999999999998754432 233355678999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHH
Q 004513 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (747)
Q Consensus 349 GKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~ 427 (747)
||||++.+|.|+|+|++|.|.|||.|++++++++||++||+|+|||.||++||||||+||. .++++|+.+|++.+++|+
T Consensus 1028 GKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1028 GKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999994 689999999999999999
Q ss_pred HHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcch
Q 004513 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (747)
Q Consensus 428 ~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~ 507 (747)
||.+||+||||.|||+|.+||||||||||||||++|||+||||||+|||||.++|+.+|++|++...+||+|+|||||++
T Consensus 1108 FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST 1187 (1228)
T ss_pred HHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhHh
Q 004513 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (747)
Q Consensus 508 i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~ 546 (747)
+++||.|+|+++|+|+|+|||+||++.+|.|.+|++.|.
T Consensus 1188 IqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1188 IQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred hhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 999999999999999999999999999999999988764
No 4
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.9e-95 Score=848.27 Aligned_cols=516 Identities=33% Similarity=0.487 Sum_probs=489.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHH
Q 004513 27 VWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALS 106 (747)
Q Consensus 27 ~~l~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~ 106 (747)
.++..+++.++++++...++.+++.++..+++.|+..++-.++|+|++++|++||++ +++|++++|+ +|.+.|+++++
T Consensus 191 ~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r~~Ge~~sR~-~el~~Ir~flt 268 (709)
T COG2274 191 STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEIISRV-RELEQIREFLT 268 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-CChhhHHHHH-HHHHHHHHHHH
Confidence 345566677777888888999999999999999999999999999999999999998 5999999998 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 004513 107 EKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAF 186 (747)
Q Consensus 107 ~~l~~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf 186 (747)
..+...+.+++++++.+++|++++|+|++++++.+|+++++..++.+.+++..++..+..++.++...|++.|+++||+.
T Consensus 269 ~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~ 348 (709)
T COG2274 269 GSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKAL 348 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHH
Q 004513 187 TNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQ 266 (747)
Q Consensus 187 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~ 266 (747)
+.|..+..+|.+...+..+...+..........+..++..++.++++|+|+++|..|.+|+|.++++......+..|+..
T Consensus 349 ~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~ 428 (709)
T COG2274 349 AAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITR 428 (709)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999998888888999999999999999999999999999999988888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCC
Q 004513 267 AATNFYSFDQGRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGR 345 (747)
Q Consensus 267 ~~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~ 345 (747)
++..+.++++++.+.+|+.++++.++|.+.... ...+...|+|+|+||+|+|+.+ +.++|+|+||+|++||++||||+
T Consensus 429 L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~ 507 (709)
T COG2274 429 LSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGR 507 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECC
Confidence 999999999999999999999999877554332 3455678899999999999754 34799999999999999999999
Q ss_pred CCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHH
Q 004513 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAH 424 (747)
Q Consensus 346 sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~ 424 (747)
||||||||+|+|+|+|+|++|+|++||.|+++++..++|++||||+||+.||+|||+|||++++ ++++|++.+||+.++
T Consensus 508 SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag 587 (709)
T COG2274 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG 587 (709)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 788899999999999
Q ss_pred HHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 004513 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (747)
Q Consensus 425 l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~ 504 (747)
+|+||..+|.||+|.|||+|.+|||||||||+||||+++||+||||||||||||+++|+.|.+.+.++..++|+|+||||
T Consensus 588 ~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHR 667 (709)
T COG2274 588 AHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR 667 (709)
T ss_pred cHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhH
Q 004513 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 505 l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
+++++.||||+||++|||+++|+|+||++.+|.|+++++.|
T Consensus 668 l~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 668 LSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred chHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999999998754
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.1e-89 Score=797.66 Aligned_cols=504 Identities=22% Similarity=0.240 Sum_probs=441.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (747)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~ 118 (747)
+.++..++.+++.++....+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++..++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~ 150 (588)
T PRK11174 72 LFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLV 150 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677788888889999999999999999999999999999 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Q 004513 119 FFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (747)
Q Consensus 119 ~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~ 198 (747)
+++.++++++++|.+++++++++|+++++..++.+..++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+
T Consensus 151 ~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 230 (588)
T PRK11174 151 PLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRS 230 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHH----H--HHH---HHHHHHHHHHHHHHH
Q 004513 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEI----V--TAL---FAVILSGLGLNQAAT 269 (747)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l----~--~~~---~~~~~~~~~l~~~~~ 269 (747)
..++..+...+..........+...+..+..+++++++++.+. |.+++|.+ . ..+ .+...+..|+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~ 309 (588)
T PRK11174 231 ASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGT 309 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9888888777776666555555555554444444455555443 77887764 1 111 122223457888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC-CCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCC
Q 004513 270 NFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (747)
Q Consensus 270 ~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~-~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGs 348 (747)
.+..+.+++.+++|+.++++.+++.........+ ...+.|+|+||+|.|++ ++++|+|+||+|++|+++||||||||
T Consensus 310 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGs 387 (588)
T PRK11174 310 FYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGA 387 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCC
Confidence 8889999999999999999876532211111111 12356999999987753 35799999999999999999999999
Q ss_pred CHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHH
Q 004513 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (747)
Q Consensus 349 GKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~ 427 (747)
|||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||||+|+||++||||||++|+ ++++++++++++.|++++
T Consensus 388 GKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~ 466 (588)
T PRK11174 388 GKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSE 466 (588)
T ss_pred CHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999997 699999999999999999
Q ss_pred HHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcch
Q 004513 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (747)
Q Consensus 428 ~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~ 507 (747)
++..+|+||||.|||+|.+|||||||||+||||+++||+|||||||||+||+++++.|+++|++..+++|+|+||||+++
T Consensus 467 ~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~ 546 (588)
T PRK11174 467 FLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546 (588)
T ss_pred HHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred hhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhHhh
Q 004513 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (747)
Q Consensus 508 i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~~ 547 (747)
++.||+|++|++|+|+|+|+|+||+++++.|++++..|.+
T Consensus 547 i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586 (588)
T ss_pred HHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence 9999999999999999999999999999999999977653
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.1e-88 Score=786.12 Aligned_cols=509 Identities=35% Similarity=0.514 Sum_probs=466.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI 113 (747)
Q Consensus 34 l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i 113 (747)
.+++++.++..++.+...++..+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.++..+......+.
T Consensus 56 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~ 134 (567)
T COG1132 56 LLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVF 134 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHH
Confidence 33444445566777778888888889999999999999999999999999 58999999999999999999998866666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 004513 114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK 193 (747)
Q Consensus 114 ~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~ 193 (747)
..++++++.+++++..+|.+++++++..|++.++..++.++.++..++.++..++..+.+.|.++|+++||+|+.++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~ 214 (567)
T COG1132 135 TSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDREL 214 (567)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHH
Confidence 67888889999999999999999999999999998888887788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS 273 (747)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~ 273 (747)
+++.+..+...+...+.....+...++...+..+..++++++|++++..+.+++|.+++++.+......++..+...+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (567)
T COG1132 215 KRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSL 294 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887778777777888888888899999999999999999999999988888888899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHH
Q 004513 274 FDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI 353 (747)
Q Consensus 274 ~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL 353 (747)
++.+..+++|++++++.+++..+.... .....+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl 371 (567)
T COG1132 295 LQRASAAAERLFELLDEEPEVEDPPDP-LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTL 371 (567)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCC-CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999999986543222111 2234567999999999963 4689999999999999999999999999999
Q ss_pred HHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhc
Q 004513 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSL 432 (747)
Q Consensus 354 l~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~l 432 (747)
+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||+||++||+|||.+|+ +++++++++|++.++++++|..+
T Consensus 372 ~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l 451 (567)
T COG1132 372 IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANL 451 (567)
T ss_pred HHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999998 58999999999999999999999
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCC
Q 004513 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNAD 512 (747)
Q Consensus 433 p~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD 512 (747)
|+||||.|||+|.+|||||||||+||||+++||+|||||||||+||+++|+.|++.++++.++||+|+||||++++++||
T Consensus 452 p~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD 531 (567)
T COG1132 452 PDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNAD 531 (567)
T ss_pred cccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred EEEEEeCceEeEecChHHHhhcchHHHHHHHhHh
Q 004513 513 YIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (747)
Q Consensus 513 ~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~ 546 (747)
+|+||++|+|+|.|+|+||++.+|.|+++++.+.
T Consensus 532 ~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 532 RIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred EEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 9999999999999999999999999999998765
No 7
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.2e-87 Score=793.65 Aligned_cols=507 Identities=27% Similarity=0.320 Sum_probs=463.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112 (747)
Q Consensus 33 ~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~ 112 (747)
++.++++.++.+++.+++.++....+.++..++|.++|+|++++|++||++ .++|++++|++ |++.+++.+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~g~~~~r~~-~~~~i~~~~~~~~~~~ 256 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-YSTGDLASRAM-GISQIRRILSGSTLTT 256 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChhHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 334444555566788888888899999999999999999999999999999 59999999997 7999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 004513 113 IHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (747)
Q Consensus 113 i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~ 192 (747)
+.+++.+++.++++++++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+++.|+.+
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 336 (686)
T TIGR03797 257 LLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRA 336 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHH
Confidence 88888888888999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (747)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~ 272 (747)
..+|.+...+..+...+......+...+...+..+..++++++|++++..|.+++|.++++..++..+..|+..+...+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~ 416 (686)
T TIGR03797 337 FARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLI 416 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888777777777778888899999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHH
Q 004513 273 SFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (747)
Q Consensus 273 ~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKST 352 (747)
.+++++.+.+|+.++++.+++..... .......+.|+++||+|+|++. ++++|+|+||+|++||++||||+|||||||
T Consensus 417 ~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKST 494 (686)
T TIGR03797 417 SILAVIPLWERAKPILEALPEVDEAK-TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKST 494 (686)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCc-CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHH
Confidence 99999999999999998765432211 1112235679999999999643 467999999999999999999999999999
Q ss_pred HHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc
Q 004513 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432 (747)
Q Consensus 353 Ll~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~l 432 (747)
|+++|+|+|+|++|+|.+||+|+++++.+++|++||||||||++|++||||||.+++++++++++++++.+++++++..+
T Consensus 495 LlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~l 574 (686)
T TIGR03797 495 LLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAM 574 (686)
T ss_pred HHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCC
Q 004513 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNAD 512 (747)
Q Consensus 433 p~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD 512 (747)
|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++. ++|+|+||||+++++.||
T Consensus 575 p~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D 652 (686)
T TIGR03797 575 PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNAD 652 (686)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999876 689999999999999999
Q ss_pred EEEEEeCceEeEecChHHHhhcchHHHHHHHhH
Q 004513 513 YIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 513 ~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
+|+||++|+|++.|+|+||+++++.|+++++.|
T Consensus 653 ~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 653 RIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred EEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 999999999999999999999999999988643
No 8
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-87 Score=796.87 Aligned_cols=501 Identities=33% Similarity=0.472 Sum_probs=456.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (747)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~ 117 (747)
++.++..++.+++.++..+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++.+++
T Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 209 LLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667778888889999999999999999999999999999 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 004513 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (747)
Q Consensus 118 ~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~ 197 (747)
.+++.++++++++|.+++++++..|+++++..++.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.
T Consensus 288 ~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~ 367 (711)
T TIGR00958 288 MLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367 (711)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (747)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (747)
+..++..+...+.....+........+..+..++++++|++++..|.+++|.++++..+......++..+...+..++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~ 447 (711)
T TIGR00958 368 EALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQA 447 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877777666666666666666677788899999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhH
Q 004513 278 RIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357 (747)
Q Consensus 278 ~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll 357 (747)
+.+++|++++++.+++........+.+..+.|+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|
T Consensus 448 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 527 (711)
T TIGR00958 448 VGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL 527 (711)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999876543322111112345679999999999865556899999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccc
Q 004513 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGY 436 (747)
Q Consensus 358 ~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~ 436 (747)
+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||||||.+|. ++++++++++++.++++++++++|+||
T Consensus 528 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gl 607 (711)
T TIGR00958 528 QNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGY 607 (711)
T ss_pred HhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999997 688999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEE
Q 004513 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (747)
Q Consensus 437 ~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~v 516 (747)
||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+++ ....+++|+|+||||+++++.||+|++
T Consensus 608 dT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~Iiv 685 (711)
T TIGR00958 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILV 685 (711)
T ss_pred CCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999999998 334578999999999999999999999
Q ss_pred EeCceEeEecChHHHhhcchHHHHH
Q 004513 517 MDEGRLFEMGTHDELLATGDLYAEL 541 (747)
Q Consensus 517 l~~G~ive~Gt~~eL~~~~~~~~~l 541 (747)
|++|+|+|+|+|+||+++++.|+++
T Consensus 686 L~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 686 LKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999998888865
No 9
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.7e-88 Score=844.13 Aligned_cols=512 Identities=28% Similarity=0.470 Sum_probs=449.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCChhHHHHHHHHHHHHHHHHHHHHH
Q 004513 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDT-YGNNGDIVSQVLSDVLLIQSALSEKV 109 (747)
Q Consensus 31 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~-~~~sG~ilsrl~~Di~~i~~~l~~~l 109 (747)
.+++++++++++.+++.+++.++..+.++++..++|.++|++++++|++||++ .+++|++++|+++|++.+++.+...+
T Consensus 867 ~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l 946 (1466)
T PTZ00265 867 KYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNI 946 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788888999999999999999999999999999999999985 23689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHH
Q 004513 110 GNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLA-EN-----------------IQDAYAEAAS 171 (747)
Q Consensus 110 ~~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~ 171 (747)
..++..++.++++++++++++|.++++++++++++. .++.+..+... ++ .++..++.+.
T Consensus 947 ~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1466)
T PTZ00265 947 VIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFM---RVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSF 1023 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHH
Confidence 999999999999999999999999887665443332 23333222111 11 1233566788
Q ss_pred HHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Q 004513 172 IAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIV 251 (747)
Q Consensus 172 ~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~ 251 (747)
.+.|+++|+++||+|+.|+.+.++|.+..+...+...+...+.++..++..++..+..++++|+|++++..|.+++|.++
T Consensus 1024 ~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~ 1103 (1466)
T PTZ00265 1024 LIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFM 1103 (1466)
T ss_pred HHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999999888888888888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCCC---CCCCcccEEEEeEEEEecCCCCCCc
Q 004513 252 TALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTN--YDGNT---LPSVHGNIEFRNVYFSYLSRPEIPI 326 (747)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~--~~~~~---~~~~~~~I~~~~v~f~y~~~~~~~v 326 (747)
+++.++++...++..++..+..+++++++++|++++++.+++.+. ..+.. .+...+.|+|+||+|+|+++++.++
T Consensus 1104 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v 1183 (1466)
T PTZ00265 1104 KSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI 1183 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc
Confidence 887666555556777888888999999999999999987643211 11111 1224568999999999986656689
Q ss_pred eeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-------------------------------------------
Q 004513 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP------------------------------------------- 363 (747)
Q Consensus 327 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p------------------------------------------- 363 (747)
|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1184 L~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1466)
T PTZ00265 1184 YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263 (1466)
T ss_pred ccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999
Q ss_pred -----------CCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHh
Q 004513 364 -----------TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (747)
Q Consensus 364 -----------~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~ 431 (747)
++|+|++||+|+++++.+++|++||||+|+|+||++||||||.||+ +++++++++|++.+++++||..
T Consensus 1264 ~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~ 1343 (1466)
T PTZ00265 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIES 1343 (1466)
T ss_pred cccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 6999999999999999999999999999999999999999999997 6899999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh
Q 004513 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR 509 (747)
Q Consensus 432 lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~ 509 (747)
||+||||.|||+|.+|||||||||||||||+++|+||||||||||||+++|+.|+++|++.. +++|+|+||||+++++
T Consensus 1344 LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~ 1423 (1466)
T PTZ00265 1344 LPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK 1423 (1466)
T ss_pred CccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874 6899999999999999
Q ss_pred cCCEEEEEeC----ceEe-EecChHHHhh-cchHHHHHHHhH
Q 004513 510 NADYIAVMDE----GRLF-EMGTHDELLA-TGDLYAELLKCE 545 (747)
Q Consensus 510 ~aD~I~vl~~----G~iv-e~Gt~~eL~~-~~~~~~~l~~~~ 545 (747)
.||+|+||++ |+++ |+|+|+||++ .+|.|+++++.+
T Consensus 1424 ~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1424 RSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred hCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9999999999 9955 8999999998 589999998654
No 10
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.9e-86 Score=789.88 Aligned_cols=505 Identities=26% Similarity=0.312 Sum_probs=462.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112 (747)
Q Consensus 33 ~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~ 112 (747)
.+.+++++++.+++.+++.++....+.++..++|.++|+|++++|++||++ .++|++++|+++| +.+++++...+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~~~g~~~~r~~~~-~~i~~~~~~~~~~~ 274 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-RHAGDIASRVQLN-DQVAEFLSGQLATT 274 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CcccHHHHHhhhH-HHHHHHHHHHHHHH
Confidence 333444455556778888889999999999999999999999999999999 5999999999888 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 004513 113 IHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (747)
Q Consensus 113 i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~ 192 (747)
+.+++.+++.++++++++|.+++++++++|+++++..++.+...+..++.++..++..+.+.|.++|+++||+++.|+.+
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 354 (710)
T TIGR03796 275 ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDF 354 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (747)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~ 272 (747)
.++|.+...+..+...+......+...+..++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~ 434 (710)
T TIGR03796 355 FSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGG 434 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888887777777777778888899999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCC------CCCC-CCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCC
Q 004513 273 SFDQGRIAAYRLYEMISRSSSTTNYD------GNTL-PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGR 345 (747)
Q Consensus 273 ~~~~~~~s~~Ri~~~l~~~~~~~~~~------~~~~-~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~ 345 (747)
.+++++.+.+|+.++++.+++..... .... +...+.|+++||+|+|+.. ++++|+|+||+|++||++|||||
T Consensus 435 ~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~ 513 (710)
T TIGR03796 435 TLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGG 513 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECC
Confidence 99999999999999998765432211 0111 2335689999999999743 46799999999999999999999
Q ss_pred CCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHH
Q 004513 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAH 424 (747)
Q Consensus 346 sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~ 424 (747)
||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||||||.+++ ++++++++++++.++
T Consensus 514 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~ 593 (710)
T TIGR03796 514 SGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAA 593 (710)
T ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 689999999999999
Q ss_pred HHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 004513 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (747)
Q Consensus 425 l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~ 504 (747)
+++++..+|+||+|.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.|.+.+++ .++|+|+||||
T Consensus 594 l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHr 671 (710)
T TIGR03796 594 IHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHR 671 (710)
T ss_pred CHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 58999999999
Q ss_pred cchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHH
Q 004513 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (747)
Q Consensus 505 l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~ 542 (747)
+++++.||+|++|++|+|++.|+|+||++.++.|++++
T Consensus 672 l~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 672 LSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999999999999999999999998876
No 11
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.1e-86 Score=787.71 Aligned_cols=501 Identities=26% Similarity=0.342 Sum_probs=458.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (747)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~ 117 (747)
++.+...++.+++.++..+.+.++..++|.++|+|++++|+.||++ .++|++++|++ |++.+++++...+...+.+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~ 281 (708)
T TIGR01193 204 IAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTGEIVSRFT-DASSIIDALASTILSLFLDMW 281 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677888888899999999999999999999999999999 59999999997 899999999988888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 004513 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (747)
Q Consensus 118 ~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~ 197 (747)
.+++.++++++++|++++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+++.|+.+.++|.
T Consensus 282 ~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 361 (708)
T TIGR01193 282 ILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKID 361 (708)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (747)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (747)
+...+..+...+.....+....+...+..+..++++++|++++..|.+|+|.++++..+...+..|+.++...+..++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~ 441 (708)
T TIGR01193 362 SEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAA 441 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888877777776666667777778888999999999999999999998888888888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCC-CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHh
Q 004513 278 RIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (747)
Q Consensus 278 ~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~l 356 (747)
+.+.+|+.++++.+++...... ...+...+.|+++||+|+|+. ++++|+|+||+|++|+++|||||||||||||+++
T Consensus 442 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlkl 519 (708)
T TIGR01193 442 RVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKL 519 (708)
T ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 9999999999987654332211 112234568999999999963 4579999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhccc
Q 004513 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEK 434 (747)
Q Consensus 357 l~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~--~~~~~~i~~a~~~~~l~~~i~~lp~ 434 (747)
|+|+|+|++|+|++||+|+++++.+++|++||||||+|+||++||||||.++. ++++++++++++.+++++++..+|+
T Consensus 520 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~ 599 (708)
T TIGR01193 520 LVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL 599 (708)
T ss_pred HhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999983 6889999999999999999999999
Q ss_pred cccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEE
Q 004513 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (747)
Q Consensus 435 G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I 514 (747)
||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++. +++|+|+||||+++++.||+|
T Consensus 600 gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i 678 (708)
T TIGR01193 600 GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKI 678 (708)
T ss_pred ccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEE
Confidence 9999999999999999999999999999999999999999999999999999999875 689999999999999999999
Q ss_pred EEEeCceEeEecChHHHhhcchHHHHHHH
Q 004513 515 AVMDEGRLFEMGTHDELLATGDLYAELLK 543 (747)
Q Consensus 515 ~vl~~G~ive~Gt~~eL~~~~~~~~~l~~ 543 (747)
++|++|++++.|+|+||++.++.|+++++
T Consensus 679 ~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 99999999999999999999999998864
No 12
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.7e-85 Score=760.96 Aligned_cols=501 Identities=24% Similarity=0.289 Sum_probs=449.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (747)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~ 118 (747)
++++..++.+++.++....+.++..++|.++|+|++++|+.||++ .++|++++|+++|++.+++++...+..++.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 69 AAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677788888889999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 004513 119 FFSGLAIAFVNCWQIALITLCTGPFIVAA-GGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (747)
Q Consensus 119 ~i~~li~~~~~~w~L~li~l~~~pli~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~ 197 (747)
+++.++++++++|.+++++++++|+++++ ..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 99999999999999999998888876553 45667777888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 004513 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVIL-SGLGLNQAATNFYSFDQ 276 (747)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~-~~~~l~~~~~~~~~~~~ 276 (747)
+..++..+...+.....+...++..++..+..++++++|+++ ..|.++.|.+++++.+... ...++..+...+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQ 306 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888777777777777778888999988 4788999998887655433 33466677777888899
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHh
Q 004513 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (747)
Q Consensus 277 ~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~l 356 (747)
+..+++|+.++++.+++.............+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++
T Consensus 307 ~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~l 385 (574)
T PRK11160 307 VIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385 (574)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999876542211111112234679999999999642 3579999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcccc
Q 004513 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (747)
Q Consensus 357 l~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G 435 (747)
|+|+|+|++|+|.+||+|+++++.+.+|++|+||+|+|++|++||+|||.+++ ++++++++++++.+++++++.. |+|
T Consensus 386 l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~G 464 (574)
T PRK11160 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKG 464 (574)
T ss_pred HhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccc
Confidence 99999999999999999999999999999999999999999999999999997 6899999999999999999999 999
Q ss_pred ccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEE
Q 004513 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (747)
Q Consensus 436 ~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~ 515 (747)
|||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|+
T Consensus 465 ldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~ 544 (574)
T PRK11160 465 LNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544 (574)
T ss_pred cCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCceEeEecChHHHhhcchHHHHHHH
Q 004513 516 VMDEGRLFEMGTHDELLATGDLYAELLK 543 (747)
Q Consensus 516 vl~~G~ive~Gt~~eL~~~~~~~~~l~~ 543 (747)
+|++|++++.|+|+||+++++.|+++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999999999999875
No 13
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.7e-85 Score=776.95 Aligned_cols=493 Identities=26% Similarity=0.381 Sum_probs=453.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (747)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~ 117 (747)
++.++..++.+++.++..+.+.++..++|.++|+|++++|++| ++ +++|++++|+ +|++.+++++...+...+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~ 271 (694)
T TIGR03375 195 LAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLP 271 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHH
Confidence 3344456778888889999999999999999999999999998 56 5899999999 8999999999988888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 004513 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (747)
Q Consensus 118 ~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~ 197 (747)
++++.++++++++|.+++++++++|+++++.+++.+..++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.
T Consensus 272 ~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 351 (694)
T TIGR03375 272 FALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWE 351 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (747)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (747)
+...+..+...+......+...+...+..++.++++++|++++..|.+++|.++++..+...+..|+..+...+..++++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~ 431 (694)
T TIGR03375 352 QTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQA 431 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888887777777777888889999999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCC-CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHh
Q 004513 278 RIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (747)
Q Consensus 278 ~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~l 356 (747)
+.+.+|+.++++.+++...... ...+...+.|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++
T Consensus 432 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlkl 510 (694)
T TIGR03375 432 KTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKL 510 (694)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 9999999999987654322111 1122345679999999999642 4579999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcccc
Q 004513 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (747)
Q Consensus 357 l~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G 435 (747)
|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+++ ++++++++++++.+++++++..+|+|
T Consensus 511 L~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~g 590 (694)
T TIGR03375 511 LLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDG 590 (694)
T ss_pred HhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999998 58999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEE
Q 004513 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (747)
Q Consensus 436 ~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~ 515 (747)
|||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+
T Consensus 591 l~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ii 670 (694)
T TIGR03375 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRII 670 (694)
T ss_pred ccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCceEeEecChHHHhhc
Q 004513 516 VMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 516 vl~~G~ive~Gt~~eL~~~ 534 (747)
+|++|+|+|+|+|+||+++
T Consensus 671 vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 671 VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999864
No 14
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=9.3e-85 Score=759.08 Aligned_cols=504 Identities=31% Similarity=0.480 Sum_probs=461.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (747)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~ 118 (747)
++++.+++.++..++..+.+.++...+|.++|+++++.|+++|++ .+.|++++|+++|++.+++.+...+..++.+++.
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 74 LMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777778888899999999999999999999999999 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Q 004513 119 FFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (747)
Q Consensus 119 ~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~ 198 (747)
+++.++++++++|.+++++++++|+++++..+..+.+++..++.++..++....+.|.++|+++||+|+.|+.+.++|.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 99999999999999999999999998888888888888889899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (747)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (747)
..+...+...+......+...+..++..+..++++++|++.+..|.+++|.+++++.++..+..|+..+...+..+++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777777777777777778888999999999999999998888777777789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHh
Q 004513 279 IAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (747)
Q Consensus 279 ~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 358 (747)
.+.+|+.++++.+++.... ....++..+.|+++||+|+|+++ +.++|+|+||+|++||++||||+||||||||+++|+
T Consensus 313 ~~~~ri~~~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 313 AACQTLFAILDLEQEKDEG-KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred HHHHHHHHHhcCCCcCCCC-CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999999999865442211 11122334579999999999643 467999999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhccccc
Q 004513 359 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGY 436 (747)
Q Consensus 359 g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~--~~~~~~i~~a~~~~~l~~~i~~lp~G~ 436 (747)
|+|+|++|+|++||.|+++++.+++|++|+||||+|++|++||+|||.+|+ ++++++++++++.++++++++.+|+||
T Consensus 391 gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gl 470 (582)
T PRK11176 391 RFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL 470 (582)
T ss_pred hccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999986 378999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEE
Q 004513 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (747)
Q Consensus 437 ~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~v 516 (747)
||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++
T Consensus 471 dt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~ 550 (582)
T PRK11176 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILV 550 (582)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999988789999999999999999999999
Q ss_pred EeCceEeEecChHHHhhcchHHHHHHHhH
Q 004513 517 MDEGRLFEMGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 517 l~~G~ive~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
|++|+|+|.|+|++|++.++.|++++..+
T Consensus 551 l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 551 VEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred EECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 99999999999999999999999998754
No 15
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.4e-84 Score=766.17 Aligned_cols=510 Identities=29% Similarity=0.417 Sum_probs=466.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112 (747)
Q Consensus 33 ~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~ 112 (747)
.+.+++++++.+++.+++.++....+.++..++|.++|+|++++|++||++ .++|++++|+ +|++.+++++...+..+
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~~~g~~~~rl-~d~~~i~~~~~~~~~~~ 259 (694)
T TIGR01846 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-RRVGDTVARV-RELEQIRNFLTGSALTV 259 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-CCHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 334444555566788888999999999999999999999999999999999 5999999999 79999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 004513 113 IHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (747)
Q Consensus 113 i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~ 192 (747)
+.+++.+++.++++++++|.+++++++++|+++++..++.+.+++..++..+..++.++.+.|+++|+++||+++.|+.+
T Consensus 260 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 339 (694)
T TIGR01846 260 VLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQF 339 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHH
Confidence 88888777788899999999999999999999988888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (747)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~ 272 (747)
.++|.+...+..+...+..........+...+..+..++++++|++++..|.+++|.++++..+...+..|+..+...+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~ 419 (694)
T TIGR01846 340 QNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQ 419 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888777777777778888899999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHH
Q 004513 273 SFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (747)
Q Consensus 273 ~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKST 352 (747)
.+++++.+++|+.++++.+++.........+...+.|+++||+|+|+.. ++++|+|+||+|++||++||||+|||||||
T Consensus 420 ~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKST 498 (694)
T TIGR01846 420 DFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKST 498 (694)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999999876543221111123345689999999999643 357999999999999999999999999999
Q ss_pred HHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHh
Q 004513 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (747)
Q Consensus 353 Ll~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~ 431 (747)
|+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|++++|++||+|||.+++ ++++++++++++.+++++++..
T Consensus 499 L~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~ 578 (694)
T TIGR01846 499 LTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE 578 (694)
T ss_pred HHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 6889999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcC
Q 004513 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA 511 (747)
Q Consensus 432 lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~a 511 (747)
+|+||||.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.|
T Consensus 579 lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 658 (694)
T TIGR01846 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC 658 (694)
T ss_pred CcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CEEEEEeCceEeEecChHHHhhcchHHHHHHHhH
Q 004513 512 DYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 512 D~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
|+|++|++|+|++.|+|+||++.++.|+++++.+
T Consensus 659 d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 659 DRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692 (694)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence 9999999999999999999999999999998754
No 16
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-83 Score=751.73 Aligned_cols=501 Identities=24% Similarity=0.319 Sum_probs=442.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 41 GGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFF 120 (747)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i 120 (747)
++..++.+++.++....+.++..++|.++|+++++.|+++|++ .++|++++|+++|++.+++.+...+..++..++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 154 (592)
T PRK10790 76 LLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIG 154 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777788888899999999999999999999999999 599999999999999999999999999999998888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Q 004513 121 SGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSL 200 (747)
Q Consensus 121 ~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~ 200 (747)
+.++++++++|.+++++++++|+++++..+..++.++..++.++..++....+.|.+.|+++||+|+.|+.+.++|.+..
T Consensus 155 ~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~ 234 (592)
T PRK10790 155 AMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEAS 234 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHH
Confidence 88899999999999999988888887777777777888888888888999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 201 QATLRYGILISLVQGLG-LGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRI 279 (747)
Q Consensus 201 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (747)
++..+...+.....++. ..+..++..+..+++++++++ +..|.+++|.++++..+...+..|+..+...+..++++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~ 313 (592)
T PRK10790 235 RSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVV 313 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766655554432 222223332222233333444 5789999999998888887888899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhc
Q 004513 280 AAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (747)
Q Consensus 280 s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 359 (747)
+++|+.++++.+++.... ...+...+.|+++||+|+|+. +.++|+|+||+|++||++||||+||||||||+++|+|
T Consensus 314 s~~ri~~~l~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 314 AGERVFELMDGPRQQYGN--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred HHHHHHHHhcCCCccCCC--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 999999999865432111 112223467999999999973 3579999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcccccccc
Q 004513 360 FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439 (747)
Q Consensus 360 ~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~ 439 (747)
+|+|++|+|.+||.|+++++.+.+|++|+||||+|++|++||||||.+++++++++++++++.+++++++..+|+||||.
T Consensus 390 l~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 390 YYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred ccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 440 vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
+||+|.+|||||||||+||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.++.||+|++|++
T Consensus 470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ceEeEecChHHHhhcchHHHHHHHhHhh
Q 004513 520 GRLFEMGTHDELLATGDLYAELLKCEEA 547 (747)
Q Consensus 520 G~ive~Gt~~eL~~~~~~~~~l~~~~~~ 547 (747)
|++++.|+|+||++.++.|+++++.+..
T Consensus 550 G~i~~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred CEEEEEcCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999999999987643
No 17
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.4e-82 Score=738.99 Aligned_cols=507 Identities=31% Similarity=0.475 Sum_probs=467.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (747)
Q Consensus 36 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~ 115 (747)
++++.++.+++.++..++....+.++...+|..+|+++++.|.++|++ .+.|++++|+++|++.+++++...+..++.+
T Consensus 60 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~ 138 (571)
T TIGR02203 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRE 138 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777888888999999999999999999999999999998 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 004513 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (747)
Q Consensus 116 i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~ 195 (747)
++.+++.++++++++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||.++.++.+.++
T Consensus 139 ~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 218 (571)
T TIGR02203 139 TLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRR 218 (571)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD 275 (747)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (747)
|.+..++..+...+.....++...+..++..+..++++++|++++..|.+++|.++++..++..+..|+..+...+..++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~ 298 (571)
T TIGR02203 219 FDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQ 298 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888777777777777888889999999999999999999999888888889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHH
Q 004513 276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (747)
Q Consensus 276 ~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ 355 (747)
+++.+.+|+.++++.+++..... ...++..+.|+++||+|+|+++ +.++|+|+||+|++||+++|+|+||||||||++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDTGT-RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVN 376 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 99999999999998655432111 1122234679999999999743 457999999999999999999999999999999
Q ss_pred hHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcc
Q 004513 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLE 433 (747)
Q Consensus 356 ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~--~~~~~~i~~a~~~~~l~~~i~~lp 433 (747)
+|+|+++|++|+|.+||+++++++.+++|++|+||||+|++|++|+||||.+++ +.++++++++++.+++++++..+|
T Consensus 377 lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp 456 (571)
T TIGR02203 377 LIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP 456 (571)
T ss_pred HHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999996 589999999999999999999999
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCE
Q 004513 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (747)
Q Consensus 434 ~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~ 513 (747)
+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+
T Consensus 457 ~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ 536 (571)
T TIGR02203 457 LGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADR 536 (571)
T ss_pred CcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCceEeEecChHHHhhcchHHHHHHHhH
Q 004513 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 514 I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
|++|++|++++.|+|+++++.++.|++++..+
T Consensus 537 ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999998888999887654
No 18
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-82 Score=707.05 Aligned_cols=506 Identities=26% Similarity=0.301 Sum_probs=453.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (747)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~ 117 (747)
++.++-.++.|.+.......+.++...||.++++++.++++.|-.. .++|++.+.+...++.++.+++..++..+..++
T Consensus 48 ~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~i 126 (559)
T COG4988 48 IALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAI 126 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445667777777788899999999999999999999999998 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 004513 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (747)
Q Consensus 118 ~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~ 197 (747)
..++.++.+|+++|.-++|+++++|++.++++++++..++..++....+...++.+.+.++|+.|+|.|+..+...++..
T Consensus 127 vp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~ 206 (559)
T COG4988 127 VPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIR 206 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH-NKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (747)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~-g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (747)
+...+.++..++.-++.-+-.....++++++.+++..+.++.... |.++....+.++...--++.|++.+...++.-+.
T Consensus 207 ~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~ 286 (559)
T COG4988 207 KDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAA 286 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 888888887777666665556666777777777766666666666 7887665555544444566799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCC--CCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHH
Q 004513 277 GRIAAYRLYEMISRSSSTTNYDGN--TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354 (747)
Q Consensus 277 ~~~s~~Ri~~~l~~~~~~~~~~~~--~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl 354 (747)
+..+.+.++.+++.+.+....... ........+..+|++|+|++. +++++|+||++++|+++||||+||||||||+
T Consensus 287 g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl 364 (559)
T COG4988 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLL 364 (559)
T ss_pred hhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHH
Confidence 999999999999887654332211 111122345556999999743 3899999999999999999999999999999
Q ss_pred HhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcc
Q 004513 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLE 433 (747)
Q Consensus 355 ~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp 433 (747)
++|+|+++|++|+|.+||+++.+++.+.||++++||+|+|+||++||||||++++ +.++++++++++.+++.+++.. |
T Consensus 365 ~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p 443 (559)
T COG4988 365 NLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-P 443 (559)
T ss_pred HHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-C
Confidence 9999999999999999999999999999999999999999999999999999999 6899999999999999999999 9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCE
Q 004513 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (747)
Q Consensus 434 ~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~ 513 (747)
+|+||.+||+|.+|||||+|||+||||+++++++||||||||+||.++|+.|.+.|.++.+++|+|+||||++.+.+||+
T Consensus 444 ~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~ 523 (559)
T COG4988 444 DGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR 523 (559)
T ss_pred CcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCceEeEecChHHHhhcchHHHHHHHhHhh
Q 004513 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (747)
Q Consensus 514 I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~~ 547 (747)
|+||++|+++|+|+|++|.++++.|++++..|..
T Consensus 524 I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 524 IVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred EEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 9999999999999999999999999999987654
No 19
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-82 Score=737.47 Aligned_cols=507 Identities=25% Similarity=0.354 Sum_probs=454.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (747)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~ 117 (747)
++.++..++.++..++....+.++..++|.++|++++++|++||++ .++|++++|+++|++.++..+...+..++..++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~ 122 (569)
T PRK10789 44 LIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR-HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLV 122 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667777778888899999999999999999999999998 589999999999999999888777777777766
Q ss_pred HHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 004513 118 TFFSGLAIA-FVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (747)
Q Consensus 118 ~~i~~li~~-~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~ 196 (747)
.++++++++ ++++|.+++++++++|+++++..++.+.+.+..++.++..++..+.+.|.+.|+++||+|+.|+.+.++|
T Consensus 123 ~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~ 202 (569)
T PRK10789 123 MGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALF 202 (569)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 666665555 5899999999999999998888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (747)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (747)
.+...+..+...+.....+....+...+..+..++++++|++++..|.+++|.++++..+......|+..+...+..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 282 (569)
T PRK10789 203 AADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVER 282 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777776666666666667777889999999999999999999888888888889889988999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHh
Q 004513 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (747)
Q Consensus 277 ~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~l 356 (747)
++.+.+|+.++++.+++.... ....+...+.|+++|++|+|+.. +.++|+|+||+|++|+++|||||||||||||+++
T Consensus 283 ~~~a~~ri~~ll~~~~~~~~~-~~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~l 360 (569)
T PRK10789 283 GSAAYSRIRAMLAEAPVVKDG-SEPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSL 360 (569)
T ss_pred HHHHHHHHHHHHcCCCcccCC-CCCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999876432211 11122334679999999999742 4579999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcccc
Q 004513 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (747)
Q Consensus 357 l~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G 435 (747)
|+|+|+|++|+|.+||.++.+++.+.+|++|+||+|+|++|++|++|||.++. ++++++++++++.+++++++..+|+|
T Consensus 361 l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g 440 (569)
T PRK10789 361 IQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQG 440 (569)
T ss_pred HhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCc
Confidence 99999999999999999999999999999999999999999999999999996 68899999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEE
Q 004513 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (747)
Q Consensus 436 ~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~ 515 (747)
++|.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|+
T Consensus 441 l~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~ 520 (569)
T PRK10789 441 YDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEIL 520 (569)
T ss_pred ccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred EEeCceEeEecChHHHhhcchHHHHHHHhHhh
Q 004513 516 VMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (747)
Q Consensus 516 vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~~ 547 (747)
+|++|++++.|+|+|+++..+.|+++++.+..
T Consensus 521 ~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 521 VMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred EEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence 99999999999999999999999999887653
No 20
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-82 Score=795.10 Aligned_cols=514 Identities=30% Similarity=0.476 Sum_probs=467.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004513 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG 110 (747)
Q Consensus 31 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~ 110 (747)
.+++++++++++.+++.+++.+++.++++++..++|.++|++++++|++|||. .++|++++|+++|++.++..+...+.
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~~l~s~l~~d~~~i~~~i~~~~~ 176 (1466)
T PTZ00265 98 DIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-NPGSKLTSDLDFYLEQVNAGIGTKFI 176 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888999999999999999999999999999999999999999 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 004513 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (747)
Q Consensus 111 ~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~ 190 (747)
.++..+++++++++++|+++|+|++++++++|+++++..++.+++++..++.++..++..+.+.|+++|+++||+|+.|+
T Consensus 177 ~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 256 (1466)
T PTZ00265 177 TIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEK 256 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCH
Confidence 99999999999999999999999999999999999999999999988888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cccHHHHHHHHHHHHHHHH
Q 004513 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHN--------KAHGGEIVTALFAVILSGL 262 (747)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g--------~~~~G~l~~~~~~~~~~~~ 262 (747)
.+.++|.+......+...+...+.++..++..++..+++++++|+|++++..| .+++|.+++++++.+....
T Consensus 257 ~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~ 336 (1466)
T PTZ00265 257 TILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMF 336 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888889999999999999986 5788988887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEE
Q 004513 263 GLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNY-DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVA 341 (747)
Q Consensus 263 ~l~~~~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~va 341 (747)
.+..++..+..++.++.|++|++++++.+++.... .+...+. .+.|+++||+|+|+.+++.++|+|+||+|++||++|
T Consensus 337 ~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~va 415 (1466)
T PTZ00265 337 MLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEE
Confidence 66677777889999999999999999876643221 1111222 247999999999986545679999999999999999
Q ss_pred EeCCCCCCHHHHHHhHhcCCCCCCceEEE-CCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-----------
Q 004513 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLL-DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR----------- 409 (747)
Q Consensus 342 ivG~sGsGKSTLl~ll~g~~~p~~G~I~i-~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~----------- 409 (747)
||||||||||||+++|+|+|+|++|+|.+ ||+++++++.+++|++||||+|+|.||++||+|||.+|.
T Consensus 416 IvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~ 495 (1466)
T PTZ00265 416 FVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSN 495 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcc
Confidence 99999999999999999999999999999 579999999999999999999999999999999999973
Q ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHHHHHHhccccccccccC
Q 004513 410 -----------------------------------------------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGR 442 (747)
Q Consensus 410 -----------------------------------------------~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge 442 (747)
++++++++++++.+++++++..||+||+|.+|+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~ 575 (1466)
T PTZ00265 496 YYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575 (1466)
T ss_pred ccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC
Confidence 135678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCc
Q 004513 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEG 520 (747)
Q Consensus 443 ~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G 520 (747)
+|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999885 489999999999999999999999986
Q ss_pred -----------------------------------------------eEeEecChHHHhh-cchHHHHHHHhHh
Q 004513 521 -----------------------------------------------RLFEMGTHDELLA-TGDLYAELLKCEE 546 (747)
Q Consensus 521 -----------------------------------------------~ive~Gt~~eL~~-~~~~~~~l~~~~~ 546 (747)
+|+|+|||+||++ .+|.|+.+++.|.
T Consensus 656 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 656 ERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 6899999987764
No 21
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-82 Score=801.23 Aligned_cols=502 Identities=20% Similarity=0.231 Sum_probs=428.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (747)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~ 117 (747)
+++++.+++.++..++....+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.++..+..++..++
T Consensus 1013 ~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~ 1091 (1522)
T TIGR00957 1013 ALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLF 1091 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666677777888899999999999999999999999999 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 004513 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (747)
Q Consensus 118 ~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~ 197 (747)
.+++.++++++.+|.++++++.++++++++..++.+..++..+......+...+.+.|+++|+++||+|++|+.+.+++.
T Consensus 1092 ~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~ 1171 (1522)
T TIGR00957 1092 NVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSD 1171 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHH
Confidence 99999988888888766655544444433333333333333333445566778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVT-HNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (747)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (747)
+..+...+........+.+.......+ ..+++++++++.+. .|.++.|.+.+++.+...+..++..++..+..++.
T Consensus 1172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~ 1248 (1522)
T TIGR00957 1172 LKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMET 1248 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777666555554443333322 22334445555554 57899999988888888888889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCC-CCC-CC--CCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHH
Q 004513 277 GRIAAYRLYEMISRSSSTTNY-DGN-TL--PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (747)
Q Consensus 277 ~~~s~~Ri~~~l~~~~~~~~~-~~~-~~--~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKST 352 (747)
+++|++|+.++++.+++.... .+. .. .+..|.|+|+||+|+|+.+ ..++|+||||+|++||++||||+|||||||
T Consensus 1249 ~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKST 1327 (1522)
T TIGR00957 1249 NIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSS 1327 (1522)
T ss_pred HHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHH
Confidence 999999999999876543211 111 11 1346789999999999743 247999999999999999999999999999
Q ss_pred HHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc
Q 004513 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432 (747)
Q Consensus 353 Ll~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~l 432 (747)
|+++|+|+|+|++|+|.|||+|+++++++++|++|+||||||.||+|||||||++..+++++++++|++.|+++++|..+
T Consensus 1328 L~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~l 1407 (1522)
T TIGR00957 1328 LTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSAL 1407 (1522)
T ss_pred HHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999965589999999999999999999999
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCC
Q 004513 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNAD 512 (747)
Q Consensus 433 p~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD 512 (747)
|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+||
T Consensus 1408 p~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~D 1487 (1522)
T TIGR00957 1408 PDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT 1487 (1522)
T ss_pred ccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEEEEeCceEeEecChHHHhhcchHHHHHHHh
Q 004513 513 YIAVMDEGRLFEMGTHDELLATGDLYAELLKC 544 (747)
Q Consensus 513 ~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~ 544 (747)
+|+||++|+|+|.|+|+||+++++.|+++++.
T Consensus 1488 rIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1488 RVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred EEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999989999998865
No 22
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.1e-82 Score=729.01 Aligned_cols=461 Identities=22% Similarity=0.253 Sum_probs=412.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 41 GGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFF 120 (747)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i 120 (747)
++..++.++..++....+.++..++|.++|++++++|.+||++ .++|++++|+++|++.+++.+...+..++..++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~ 142 (529)
T TIGR02868 64 IGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888888999999999999999999999999999 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 004513 121 SGLAIAFVNCWQIALITLCTGPFIVAAGGISN-IFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATS 199 (747)
Q Consensus 121 ~~li~~~~~~w~L~li~l~~~pli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~ 199 (747)
++++++++++|.+++++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+.
T Consensus 143 ~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 222 (529)
T TIGR02868 143 AAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAA 222 (529)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999999888777766554443 44455667777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 200 LQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRI 279 (747)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (747)
.++..+...+.....+....+...+..+..++++++|++++..|.+++|.++++..+......++..+...+..+++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (529)
T TIGR02868 223 DRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRA 302 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888887777777777777788889999999999999999998888777777788888888889999999
Q ss_pred HHHHHHHHhcCCCCCCCCCC---CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHh
Q 004513 280 AAYRLYEMISRSSSTTNYDG---NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (747)
Q Consensus 280 s~~Ri~~~l~~~~~~~~~~~---~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~l 356 (747)
+.+|+.++++.+++...... ...++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++
T Consensus 303 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 303 AAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLML 380 (529)
T ss_pred HHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999987654221111 111123457999999999964 2469999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcccc
Q 004513 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (747)
Q Consensus 357 l~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G 435 (747)
|+|+|+|++|+|.+||+|++++ .+++|++|+||||+|+||++||||||++|+ +++++++++|++.|++++++..||+|
T Consensus 381 L~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~G 459 (529)
T TIGR02868 381 LTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDG 459 (529)
T ss_pred HhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCccc
Confidence 9999999999999999999999 999999999999999999999999999997 68999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCc
Q 004513 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (747)
Q Consensus 436 ~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l 505 (747)
|||.|||+|.+|||||||||+||||++++|+|||||||||+||+++++.|++.+++..+++|+|+||||+
T Consensus 460 ldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 460 LDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999888899999999996
No 23
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.3e-81 Score=730.14 Aligned_cols=493 Identities=27% Similarity=0.392 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004513 51 VSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNC 130 (747)
Q Consensus 51 ~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~ 130 (747)
.++......++..+++.++|++++++|+.+|++ .+.|++++|+++|++.+.+.+...+..++..++.+++.++++++++
T Consensus 77 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (588)
T PRK13657 77 ARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMN 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555566667779999999999999999 5999999999999999998888888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 004513 131 WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (747)
Q Consensus 131 w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~ 210 (747)
|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.+.|+++||.|+.++.+.++|.+..++..+...+.
T Consensus 156 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
T PRK13657 156 WRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPV 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888888899999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004513 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (747)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~ 290 (747)
.....+...+..++..+..++++++|++++..|.+++|.++++..++..+..|+..+...+..+..++.+++|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 315 (588)
T PRK13657 236 LSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDA 315 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77777766666677777778888999999999999999999988888778888889988889999999999999999876
Q ss_pred CCCCCCCCC-CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE
Q 004513 291 SSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369 (747)
Q Consensus 291 ~~~~~~~~~-~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~ 369 (747)
+++.+...+ ...+...+.|+++||+|+|+. +.++|+|+||++++||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 316 VPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred CcccCCCCCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 543221111 111223457999999999963 24699999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 370 LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 370 i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
+||.++.+++.+.+|++|+||||+|++|++||||||++++ +.++++++++++.+++++++..+|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 9999999999999999999999999999999999999997 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecCh
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~ 528 (747)
|||||||+||||++++|+|||||||||+||+++++.+.+.|+...+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999988789999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHhHh
Q 004513 529 DELLATGDLYAELLKCEE 546 (747)
Q Consensus 529 ~eL~~~~~~~~~l~~~~~ 546 (747)
++|++.++.|.+++..+.
T Consensus 554 ~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVARGGRFAALLRAQG 571 (588)
T ss_pred HHHHHCCChHHHHHHHhh
Confidence 999998999999887553
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.5e-81 Score=728.07 Aligned_cols=508 Identities=34% Similarity=0.522 Sum_probs=455.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (747)
Q Consensus 37 v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i 116 (747)
+++.++..++.+++.++..+++.++...+|.++|++++++|.++|++ .+.|++++|+++|++.+++++...+..++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 143 (576)
T TIGR02204 65 LVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNA 143 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667777888889999999999999999999999999998 58999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 004513 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (747)
Q Consensus 117 ~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~ 196 (747)
+.+++.++++++++|.+++++++..|+++++..++.+.+++..++.++..++..+.+.|.++|+++||+++.|+.+..+|
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~ 223 (576)
T TIGR02204 144 LMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRF 223 (576)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHH
Confidence 99999999999999999999999889888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (747)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (747)
.+...+..+...+......+...+...+..+..++++++|++++..|.+++|.++++..+......|+..+...+..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~ 303 (576)
T TIGR02204 224 GGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQR 303 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777666666655555555555566677888999999999999999998888887778889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC-CCCC-CCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHH
Q 004513 277 GRIAAYRLYEMISRSSSTTNYD-GNTL-PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354 (747)
Q Consensus 277 ~~~s~~Ri~~~l~~~~~~~~~~-~~~~-~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl 354 (747)
++.+++|+.++++.+++..... .... .+..+.|+++||+|+|+.+.++++|+|+||+|+|||++||+|+||||||||+
T Consensus 304 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLl 383 (576)
T TIGR02204 304 AAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLF 383 (576)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHH
Confidence 9999999999998654322111 1111 1223579999999999753336799999999999999999999999999999
Q ss_pred HhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcc
Q 004513 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLE 433 (747)
Q Consensus 355 ~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp 433 (747)
++|+|+|+|++|+|.+||.++.+++.+.+|++|+|+||+|++|++||||||.+++ +.++++++++++.+++++++..+|
T Consensus 384 klL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~ 463 (576)
T TIGR02204 384 QLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALP 463 (576)
T ss_pred HHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999987 578899999999999999999999
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCE
Q 004513 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (747)
Q Consensus 434 ~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~ 513 (747)
+|++|.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.++.+.+++|+|+||||++.++.||+
T Consensus 464 ~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~ 543 (576)
T TIGR02204 464 EGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADR 543 (576)
T ss_pred CCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCceEeEecChHHHhhcchHHHHHHHhH
Q 004513 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 514 I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
|++|++|++++.|+|+++.+..+.|++++..+
T Consensus 544 vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 544 IVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred EEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 99999999999999999999999999887643
No 25
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.1e-80 Score=724.86 Aligned_cols=493 Identities=26% Similarity=0.374 Sum_probs=441.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004513 51 VSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNC 130 (747)
Q Consensus 51 ~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~ 130 (747)
.++....+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++
T Consensus 77 ~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (585)
T TIGR01192 77 AREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMD 155 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555667779999999999999998 5899999999999999999998888888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 004513 131 WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (747)
Q Consensus 131 w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~ 210 (747)
|.+++++++++|+++++..++.+.+++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (585)
T TIGR01192 156 WRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPV 235 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004513 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (747)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~ 290 (747)
....++...+...+..+..++++++|++++..|.+++|.++++..++..+..|+.++...+..+..++.+++|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~ 315 (585)
T TIGR01192 236 LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS 315 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77666666666666667777888999999999999999999988777777778888888889999999999999999886
Q ss_pred CCCCCCCCC-CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE
Q 004513 291 SSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369 (747)
Q Consensus 291 ~~~~~~~~~-~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~ 369 (747)
+++...... ...+...+.|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 316 VFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CccccCCccCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 543221111 111223457999999999963 24689999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 370 LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 370 i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
+||.++.+++.+.+|++++||+|+|++|++|++|||.++. ++++++++++++.+++++++..+|+|++|.+|++|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 9999999999999999999999999999999999999986 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecCh
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~ 528 (747)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHhHh
Q 004513 529 DELLATGDLYAELLKCEE 546 (747)
Q Consensus 529 ~eL~~~~~~~~~l~~~~~ 546 (747)
+|++++++.|++++..+.
T Consensus 554 ~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQKDGRFYKLLRRSG 571 (585)
T ss_pred HHHHHCCChHHHHHHhCc
Confidence 999999999999987654
No 26
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-84 Score=693.17 Aligned_cols=501 Identities=27% Similarity=0.372 Sum_probs=438.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 44 FAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL 123 (747)
Q Consensus 44 ~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~l 123 (747)
.+++-++.++|....+-..+++-.++|+|+.++++.|+-. +.+|+++.-+++..+.+. ++...+.++...++-+.+++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~-rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN-RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec-ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 4566778888888889999999999999999999999988 589999988888777666 55544444444444444444
Q ss_pred H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 004513 124 A-IAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQA 202 (747)
Q Consensus 124 i-~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~ 202 (747)
+ +...++|+.+++++++..+++.+.+.+..+-.+..++......+......+++-+.+|||-||+|+++.++|.++...
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~ 430 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK 430 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHH
Confidence 4 234578999999999998888877777777777777777777788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 203 TLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAY 282 (747)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 282 (747)
+++..++....-.+......++..+..+....+.+|+|..+.+++|+.+.+..+++..+.|++.....+..+++..+-.+
T Consensus 431 Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmE 510 (790)
T KOG0056|consen 431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDME 510 (790)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHH
Confidence 99887776554444444444444444444444556778899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCC-CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC
Q 004513 283 RLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (747)
Q Consensus 283 Ri~~~l~~~~~~~~~~~-~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~ 361 (747)
+++++++++++..+..+ .+.....|.|+|+||+|.|+ +++|+|+||||+++||+.+|+|||||+||||++++|+|++
T Consensus 511 nmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff 588 (790)
T KOG0056|consen 511 NMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF 588 (790)
T ss_pred HHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence 99999998776543322 22334578999999999995 5689999999999999999999999999999999999999
Q ss_pred CCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccc
Q 004513 362 DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQV 440 (747)
Q Consensus 362 ~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~v 440 (747)
+.++|.|.|||+||++....++|++||+||||..||+.||..||.|++ .+++|++.+|++++++||.|.++|+||+|.|
T Consensus 589 dv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~V 668 (790)
T KOG0056|consen 589 DVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRV 668 (790)
T ss_pred hccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhh
Confidence 999999999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCc
Q 004513 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (747)
Q Consensus 441 ge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G 520 (747)
||||..||||||||+||||+++++|.|++|||+|||||..+|+.||.++.++..+||.|+|+|||+++-+||.|+|+++|
T Consensus 669 GERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 669 GERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred hhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeEecChHHHhhc-chHHHHHHHhHhhh
Q 004513 521 RLFEMGTHDELLAT-GDLYAELLKCEEAA 548 (747)
Q Consensus 521 ~ive~Gt~~eL~~~-~~~~~~l~~~~~~~ 548 (747)
+|+|.|+|+||+++ +|.|+.+|+.|+..
T Consensus 749 ~IvErG~HeeLl~rdgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 749 RIVERGRHEELLKRDGGAYADMWQAQQAM 777 (790)
T ss_pred eEeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence 99999999999998 89999999877654
No 27
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.4e-81 Score=788.16 Aligned_cols=501 Identities=21% Similarity=0.269 Sum_probs=400.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (747)
Q Consensus 37 v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i 116 (747)
++++++.+++.+++.+++...+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..++..+..++..+
T Consensus 960 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~ 1038 (1622)
T PLN03130 960 ALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQI 1038 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888888999999999999999999999999999 59999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 004513 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAEN----IQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (747)
Q Consensus 117 ~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~ 192 (747)
+.+++.++++++++|.. ++++ +|+++++. +..++..+..++ .....+...+.+.|+++|+++||+|+.++.+
T Consensus 1039 ~~~i~~~i~i~~~~~~~-~~~~--~pl~~~~~-~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f 1114 (1622)
T PLN03130 1039 FQLLSTFVLIGIVSTIS-LWAI--MPLLVLFY-GAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 1114 (1622)
T ss_pred HHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHH
Confidence 98888888888777733 2222 23322221 222223333333 3334456778899999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cc-----HHHHHHHHHHHHHHHHHHHH
Q 004513 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNK-AH-----GGEIVTALFAVILSGLGLNQ 266 (747)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~-~~-----~G~l~~~~~~~~~~~~~l~~ 266 (747)
.+.+.+..+...+........+.+...... .+..+++++.+.+.+..+. .. .+.+..++.+.+.....+..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~---~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~ 1191 (1622)
T PLN03130 1115 AEINGRSMDNNIRFTLVNMSSNRWLAIRLE---TLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTA 1191 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 877776666555544333322222211111 1222223333444444332 11 12222222233334445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CCCCC--CCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEE
Q 004513 267 AATNFYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTL--PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVAL 342 (747)
Q Consensus 267 ~~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~--~~~~~--~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vai 342 (747)
+...+..++.++++++|+.++++.+++.+.. ...+. .+..|.|+|+||+|+|+++ ..++|+||||+|++||++||
T Consensus 1192 l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaI 1270 (1622)
T PLN03130 1192 VLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGI 1270 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEE
Confidence 6666677889999999999999876653211 11111 1346789999999999632 34799999999999999999
Q ss_pred eCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHH
Q 004513 343 VGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKI 422 (747)
Q Consensus 343 vG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~ 422 (747)
||+||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|+||||||.||+|||||||.++++++++++++|++.
T Consensus 1271 VGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~ 1350 (1622)
T PLN03130 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLER 1350 (1622)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEe
Q 004513 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502 (747)
Q Consensus 423 ~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~it 502 (747)
|+++++|..+|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||
T Consensus 1351 a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IA 1430 (1622)
T PLN03130 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1430 (1622)
T ss_pred cCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcchhhcCCEEEEEeCceEeEecChHHHhhc-chHHHHHHHhHh
Q 004513 503 RRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCEE 546 (747)
Q Consensus 503 H~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~-~~~~~~l~~~~~ 546 (747)
||++++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++...
T Consensus 1431 HRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1431 HRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999999999999999987 689999987643
No 28
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-81 Score=683.46 Aligned_cols=510 Identities=30% Similarity=0.380 Sum_probs=443.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGN 111 (747)
Q Consensus 32 ~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~ 111 (747)
..+.+.++.++..+++.++.+++.+..+++.+..-.+.|+++++++++||.+ ..+|++.+.+.+-...|..++...+..
T Consensus 76 ~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 76 LLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 3345556667777888999999999999999999999999999999999998 589999999999999999999888888
Q ss_pred HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 004513 112 YIHNMATFFSGLA-IAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (747)
Q Consensus 112 ~i~~i~~~i~~li-~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~ 190 (747)
++..++.+..... +-.-.....+++++.++..+..+.+....+-.+..++..++.+.++..+.+.+.|.++||+||.|+
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~ 234 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEE 234 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHH
Confidence 7777766555443 334466777778877777777777777777777778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270 (747)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~ 270 (747)
++.++|...+....+.+.+.....++.......+.....+.+.+.|..-+..+.+|+|.++...........|++.+...
T Consensus 235 ~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~v 314 (591)
T KOG0057|consen 235 YEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSV 314 (591)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHH
Confidence 99999999999999998888777766655555555555666667777778889999999988776667777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCH
Q 004513 271 FYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGK 350 (747)
Q Consensus 271 ~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGK 350 (747)
+..+.++..-..-++.+......... ...+.....+.|+|+||+|.|+ +++++|+++||+|++||+|||||+|||||
T Consensus 315 yr~~~q~l~Dm~~~~~l~~~~~~i~~-~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGK 391 (591)
T KOG0057|consen 315 YRELRQALTDMRTLFILLEVDEDIQE-AALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGK 391 (591)
T ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhh-ccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCH
Confidence 88877776666665554433221111 1112223456799999999996 45679999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHH
Q 004513 351 SSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFI 429 (747)
Q Consensus 351 STLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i 429 (747)
||++++|+||++ ++|+|+|||+|+++++++.+|+.|||||||..||++||.+||.||+ .++++++.++||.+++||-|
T Consensus 392 STilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i 470 (591)
T KOG0057|consen 392 STILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVI 470 (591)
T ss_pred HHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh
Q 004513 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR 509 (747)
Q Consensus 430 ~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~ 509 (747)
.++|+||+|.|||+|..|||||||||+||||+++||+|++||||||+||.++|+.+.+.|.....+||+|+|.||+++++
T Consensus 471 ~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 471 SRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred HhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhHh
Q 004513 510 NADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (747)
Q Consensus 510 ~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~ 546 (747)
+||+|++|++|++.|.|+|+||++..+.|+++|..|.
T Consensus 551 ~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 551 DFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred cCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence 9999999999999999999999998899999987654
No 29
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-80 Score=781.86 Aligned_cols=504 Identities=19% Similarity=0.210 Sum_probs=414.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 41 GGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFF 120 (747)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i 120 (747)
++.++..++..+.....+.+...++|.++|++++++|+.|||+ +++|++++|+++|++.+++.+...+..++..++.++
T Consensus 1009 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i 1087 (1560)
T PTZ00243 1009 LLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555566677888899999999999999999999 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Q 004513 121 SGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSL 200 (747)
Q Consensus 121 ~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~ 200 (747)
+.++++++.+|.++++++.++.++..+..++.+..++..+......+...+.+.|+++|+++||+|+.++.+.++|.+..
T Consensus 1088 ~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~ 1167 (1560)
T PTZ00243 1088 SSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRL 1167 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHH
Confidence 99888888888544332222212222222222333333333445666778999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 201 QATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLV--THNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (747)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv--~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (747)
+...+..........+......++..+..+++.+++.+.. ..+.+++|.+..++.+...+..++..++..+..++.++
T Consensus 1168 d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~ 1247 (1560)
T PTZ00243 1168 DVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADM 1247 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666555555444444444333333333443332 34457788777777666777778888898999999999
Q ss_pred HHHHHHHHHhcCCCCCC-CC-------------------------CCC-----CCCCCcccEEEEeEEEEecCCCCCCce
Q 004513 279 IAAYRLYEMISRSSSTT-NY-------------------------DGN-----TLPSVHGNIEFRNVYFSYLSRPEIPIL 327 (747)
Q Consensus 279 ~s~~Ri~~~l~~~~~~~-~~-------------------------~~~-----~~~~~~~~I~~~~v~f~y~~~~~~~vL 327 (747)
.+++|+.++++..+++. .. ... +.++..|.|+|+||+|+|+++ ..++|
T Consensus 1248 ~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL 1326 (1560)
T PTZ00243 1248 NSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVL 1326 (1560)
T ss_pred HHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCcee
Confidence 99999999996432211 00 000 011234789999999999642 34699
Q ss_pred eeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhc
Q 004513 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAY 407 (747)
Q Consensus 328 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~ 407 (747)
+||||+|++||++||||+||||||||+++|+|+|+|++|+|.|||+|+++++.+++|++|+||||||.||+|||||||++
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC-CCEEEEeCCCCCCCHHHHHHHH
Q 004513 408 GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN-PSILLLDEVTGGLDFEAERAVQ 486 (747)
Q Consensus 408 g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~-p~illLDEpTsaLD~~~~~~i~ 486 (747)
+..++++++++|++.|+++++|..+|+||||.|||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|+
T Consensus 1407 ~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1407 FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhc-chHHHHHHHhHh
Q 004513 487 EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCEE 546 (747)
Q Consensus 487 ~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~-~~~~~~l~~~~~ 546 (747)
+.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++.+.
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999998899999999999999999999999999999999999999975 789999987654
No 30
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.8e-80 Score=710.59 Aligned_cols=481 Identities=24% Similarity=0.291 Sum_probs=427.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI 113 (747)
Q Consensus 34 l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i 113 (747)
+.+++++++..++.++..++....+.++..++|.++|++++++|+.+|++ .++|++++|+++|++.+++.+...+..++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~~ 126 (529)
T TIGR02857 48 GALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQLV 126 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445555666788888899999999999999999999999999999999 59999999999999999999998888889
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 004513 114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK 193 (747)
Q Consensus 114 ~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~ 193 (747)
..++.+++.++++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 206 (529)
T TIGR02857 127 LAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQA 206 (529)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHH
Confidence 88888888889999999999999999989888877788888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS 273 (747)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~ 273 (747)
++|.+..++..+...+..........+...+..+..++++.++++.+..|.+++|.++++..+......|+..+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~ 286 (529)
T TIGR02857 207 AAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHA 286 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777666665555555555555555555677777799999999998877777777788888888999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHH
Q 004513 274 FDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI 353 (747)
Q Consensus 274 ~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL 353 (747)
+++++.+++|+.++++.+++..... ...+...+.|+++||+|+|+++ ++++|+|+||+|++|+++|||||||||||||
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL 364 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLAGKA-PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTL 364 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCc-CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHH
Confidence 9999999999999998543222111 1111123579999999999743 3579999999999999999999999999999
Q ss_pred HHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhc
Q 004513 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSL 432 (747)
Q Consensus 354 l~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~l 432 (747)
+++|+|+|+|++|+|.+||.|+++++.+++|++|+||+|+|++|++||+|||.++. ++++++++++++.++++++++.+
T Consensus 365 ~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 365 LNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAAL 444 (529)
T ss_pred HHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987 67899999999999999999999
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCC
Q 004513 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNAD 512 (747)
Q Consensus 433 p~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD 512 (747)
|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||
T Consensus 445 p~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d 524 (529)
T TIGR02857 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERAD 524 (529)
T ss_pred cccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred EEEEE
Q 004513 513 YIAVM 517 (747)
Q Consensus 513 ~I~vl 517 (747)
+|++|
T Consensus 525 ~i~~l 529 (529)
T TIGR02857 525 RIVVL 529 (529)
T ss_pred EEEeC
Confidence 99986
No 31
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.3e-80 Score=779.44 Aligned_cols=502 Identities=19% Similarity=0.246 Sum_probs=401.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (747)
Q Consensus 37 v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i 116 (747)
++++++..++.+++.++....+.++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..+
T Consensus 957 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~ 1035 (1495)
T PLN03232 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNMFMNQL 1035 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888889999999999999999999999999999 59999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 004513 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAG--GIS-NIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK 193 (747)
Q Consensus 117 ~~~i~~li~~~~~~w~L~li~l~~~pli~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~ 193 (747)
+.+++.+++++++++... +++ +|+++++. ..+ .+..++..+......+...+.+.|+++|+++||+|+.++.+.
T Consensus 1036 ~~~i~~~i~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~ 1112 (1495)
T PLN03232 1036 WQLLSTFALIGTVSTISL-WAI--MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMA 1112 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHH
Confidence 888888877777665332 222 23322221 111 122222333344555667789999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccc-----HHHHHHHHHHHHHHHHHHHHH
Q 004513 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH-NKAH-----GGEIVTALFAVILSGLGLNQA 267 (747)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~-g~~~-----~G~l~~~~~~~~~~~~~l~~~ 267 (747)
+++.+..+...+..........+.... +..+..+++++.|.+.+.. +.+. .+.+..++.+...+..++..+
T Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l 1189 (1495)
T PLN03232 1113 KINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGV 1189 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 877776665555444332222221111 1122223333334444432 3221 111222233333344467777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CC-CCC--CCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEe
Q 004513 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNY-DG-NTL--PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALV 343 (747)
Q Consensus 268 ~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~-~~~--~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaiv 343 (747)
...+..++.++.+++|+.++++.+++.+.. .. ... .+..|.|+|+||+|+|+.+ .+++|+|+||+|++||++|||
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIV 1268 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVV 1268 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEE
Confidence 888888999999999999999876553321 11 111 1345789999999999532 357999999999999999999
Q ss_pred CCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHH
Q 004513 344 GRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIA 423 (747)
Q Consensus 344 G~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~ 423 (747)
||||||||||+++|+|+|+|++|+|.|||+|+++++.+++|++|+||||||.||+|||||||+++++++++++++|++.|
T Consensus 1269 G~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a 1348 (1495)
T PLN03232 1269 GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348 (1495)
T ss_pred CCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEee
Q 004513 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR 503 (747)
Q Consensus 424 ~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH 503 (747)
++++++..+|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+|||
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAH 1428 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAH 1428 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred CcchhhcCCEEEEEeCceEeEecChHHHhhcc-hHHHHHHHhHh
Q 004513 504 RLSLIRNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEE 546 (747)
Q Consensus 504 ~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~-~~~~~l~~~~~ 546 (747)
|++++.+||+|+||++|+|+|.|+|+||++++ +.|+++++.+.
T Consensus 1429 Rl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1429 RLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999876 58999987654
No 32
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-78 Score=698.94 Aligned_cols=488 Identities=24% Similarity=0.294 Sum_probs=429.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004513 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEK-VGNYIH 114 (747)
Q Consensus 36 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~-l~~~i~ 114 (747)
++++.++..++.+++.++....+.++..++|.++|++++++|+.. .+...+++++|++.+++.+... +..++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~ 125 (544)
T TIGR01842 52 ALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR------GKIDGLQALRDLDQLRQFLTGPGLFAFFD 125 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC------ccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333444556677888888899999999999999999999999842 2556889999999999988773 444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Q 004513 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKY 194 (747)
Q Consensus 115 ~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~ 194 (747)
.++ .++.++++++++|.+++++++.+|+++++..+..++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+
T Consensus 126 ~~~-~~~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 204 (544)
T TIGR01842 126 APW-MPIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTK 204 (544)
T ss_pred HHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHH
Confidence 444 3444567889999999999988888877777777888888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 195 SYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSF 274 (747)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~ 274 (747)
+|.+..++..+...+.....+....+...+..+..++++++|++++..|.+++|.++++..++.....|+..+...+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~ 284 (544)
T TIGR01842 205 RWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQF 284 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777777776666666666777788899999999999999999998888888888999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHH
Q 004513 275 DQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354 (747)
Q Consensus 275 ~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl 354 (747)
++++.+++|+.++++.+++.... ...+...+.|+++||+|+|+.. +.++|+|+||+|++|+++|||||||||||||+
T Consensus 285 ~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~ 361 (544)
T TIGR01842 285 SGARQAYKRLNELLANYPSRDPA--MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLA 361 (544)
T ss_pred HHHHHHHHHHHHHHhCCccccCC--CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999999765543211 1122234579999999999642 35799999999999999999999999999999
Q ss_pred HhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcc
Q 004513 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLE 433 (747)
Q Consensus 355 ~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp 433 (747)
++|+|+++|++|+|.+||+++.+++.+.+|+.|+||||+|++|++|++|||.++. ++++++++++++.++++++++.+|
T Consensus 362 ~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 441 (544)
T TIGR01842 362 RLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLP 441 (544)
T ss_pred HHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999776 588999999999999999999999
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCC
Q 004513 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNAD 512 (747)
Q Consensus 434 ~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD 512 (747)
+|++|.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++.. +++|+|+||||++.++.||
T Consensus 442 ~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d 521 (544)
T TIGR01842 442 DGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVD 521 (544)
T ss_pred cccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999998875 6899999999999999999
Q ss_pred EEEEEeCceEeEecChHHHhh
Q 004513 513 YIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 513 ~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|++|++|++++.|+|+|+++
T Consensus 522 ~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 522 KILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999875
No 33
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-79 Score=737.78 Aligned_cols=501 Identities=22% Similarity=0.279 Sum_probs=425.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 35 YIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH 114 (747)
Q Consensus 35 ~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~ 114 (747)
.+.+++++..++..++.+.+...+.+.++.||.++++++++.|++|||+ +|+|+|+||+++|++.+|..++..+..+++
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~ 941 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEFFLQ 941 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHHHHH
Confidence 3445556666777788888999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHhcchH
Q 004513 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAY----AEAASIAEQAVSYIRTLYAFTNET 190 (747)
Q Consensus 115 ~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~tIkaf~~e~ 190 (747)
.++.+++.++++.+..|++.++++ |+.+ +.+++.+++.+.+++.++.. +-..+++.|++.|+.|||+|+.++
T Consensus 942 ~~~~~l~~~~vi~~~~P~fli~~~---pl~v-~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 942 SLLNVLGILVVISYVTPWFLIAII---PLGV-IYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHHH---HHHH-HHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 999999999888888776654443 3333 33445666667777766543 345689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c-ccHHHHHHHHHHHHHHHHHHHHHH
Q 004513 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHN-K-AHGGEIVTALFAVILSGLGLNQAA 268 (747)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g-~-~~~G~l~~~~~~~~~~~~~l~~~~ 268 (747)
++.+++....+...+..+.....+.+..- -+-.++.++++..+...+... . .+.|.+..++.+.+.....++.++
T Consensus 1018 rf~~~~~~~~D~~~~~~f~~~~a~RWla~---Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~v 1094 (1381)
T KOG0054|consen 1018 RFIQENDELIDENSRAFFLSISANRWLAV---RLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLV 1094 (1381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887776555443333222 222233333333333333322 2 567888777777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC--C--CCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeC
Q 004513 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNY--D--GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVG 344 (747)
Q Consensus 269 ~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~--~--~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG 344 (747)
.....++..++|++|+.++.+.++|.+.. . .....|.+|.|+|+|++.+|..+ ..+||+||||+|+|||+|||||
T Consensus 1095 R~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVG 1173 (1381)
T KOG0054|consen 1095 RQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVG 1173 (1381)
T ss_pred HHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeC
Confidence 88889999999999999999976652111 1 12223568999999999999643 4689999999999999999999
Q ss_pred CCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHH
Q 004513 345 RNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH 424 (747)
Q Consensus 345 ~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~ 424 (747)
++|||||||+++|.|+.+|.+|+|.|||+||.++++++||++++++||||.||+||+|.||++...++|+++|+|++.|+
T Consensus 1174 RTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~ 1253 (1381)
T KOG0054|consen 1174 RTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQ 1253 (1381)
T ss_pred CCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 004513 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (747)
Q Consensus 425 l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~ 504 (747)
|++.++++|.|+|+.|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|...||+.|++..+++|+|.|+||
T Consensus 1254 Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1254 LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR 1333 (1381)
T ss_pred hHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcCCEEEEEeCceEeEecChHHHhhc-chHHHHHHHh
Q 004513 505 LSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKC 544 (747)
Q Consensus 505 l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~-~~~~~~l~~~ 544 (747)
++++.+||||+|||+|+|+|.|+|++|+++ ++.|+.++..
T Consensus 1334 l~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1334 LNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred cchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999999999999986 6667655443
No 34
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-78 Score=659.57 Aligned_cols=498 Identities=24% Similarity=0.295 Sum_probs=422.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 42 GVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFS 121 (747)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~ 121 (747)
.--+..|......+....++...||.++|+++...++.-..+. .+||+++|+..|++.+++.+-..+..++..+..+++
T Consensus 70 ~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~ 148 (573)
T COG4987 70 LRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAV 148 (573)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHH
Confidence 3345666677777788889999999999999999999999984 899999999999999999999999888888888777
Q ss_pred HHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Q 004513 122 GLAIAFVNCWQIALITLCT-GPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSL 200 (747)
Q Consensus 122 ~li~~~~~~w~L~li~l~~-~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~ 200 (747)
..+.+.+++|.+++.+.+. ..+++++..++.++-++..++.....+...+.+.+.+.|...++.||+++.+.+.+.+..
T Consensus 149 ~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e 228 (573)
T COG4987 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATE 228 (573)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHH
Confidence 7777767888877665443 344445556666777778888888889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 004513 201 QATLRYGILISLVQGLGLGFTYGLAICSCA-LQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA-TNFYSFDQGR 278 (747)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 278 (747)
....+...+...+.++...+..++..+..+ .++|+++ .+-.|..+.-....+++.++....++..+. ..+....+..
T Consensus 229 ~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~ 307 (573)
T COG4987 229 ASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVI 307 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHH
Confidence 888888888888887777666666555444 4445443 344555543223222222222222233333 4566778889
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHh
Q 004513 279 IAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (747)
Q Consensus 279 ~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 358 (747)
.|+.|+.++++.+++...++ ...+.....++++||+|+|+++ +.++|+|+||++++||++||+|+|||||||++++|.
T Consensus 308 ~Sa~Rl~~i~~q~~e~~~~~-~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 308 ASARRLNDILDQKPEVTFPD-EQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred HHHHHHhhhccCCcccCCCc-cccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence 99999999999887654331 1122222279999999999864 568999999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcccccc
Q 004513 359 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYE 437 (747)
Q Consensus 359 g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~ 437 (747)
|.|+|++|+|.++|.++..++.+.+|+.|++++|.++||++|+||||.+++ +++||+++++++++++++.+++.|+||+
T Consensus 386 ~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 386 GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred hccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhh
Confidence 999999999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEE
Q 004513 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 438 t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
|.+||+|.+||||||||++|||+|++|++++||||||.|||+.||+.+.+.|....+|||+|+||||+..++.||+|+||
T Consensus 466 t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl 545 (573)
T COG4987 466 TWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVL 545 (573)
T ss_pred chhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceEeEecChHHHhhcchHHHHHHH
Q 004513 518 DEGRLFEMGTHDELLATGDLYAELLK 543 (747)
Q Consensus 518 ~~G~ive~Gt~~eL~~~~~~~~~l~~ 543 (747)
++|+|+|+|+|.+|++.+|.|+++++
T Consensus 546 ~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 546 DNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred ECCeeeecCCHHhhhccccHHHHHhc
Confidence 99999999999999999999998875
No 35
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.9e-77 Score=753.57 Aligned_cols=498 Identities=17% Similarity=0.200 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 43 VFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122 (747)
Q Consensus 43 ~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~ 122 (747)
..++.+++.+++...+.+...++|.++|+++++.|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888899999999999999999999999999 59999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 004513 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQA 202 (747)
Q Consensus 123 li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~ 202 (747)
++++++++|.++++++.++.+++++..++.+..++..+......+...+.+.|++.|+.+||+|++++.+.+++.+..+.
T Consensus 1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~ 1096 (1490)
T TIGR01271 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNL 1096 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99888888876554333222222222222222233333334455667789999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 203 TLRYGILISLVQGLGLGFTYGLAICSC--ALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIA 280 (747)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s 280 (747)
..+..........+.......+..+.. +++++++. ..+..|.+..++.+.+.+..++..++..+..+..++.+
T Consensus 1097 ~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s 1171 (1490)
T TIGR01271 1097 HTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS 1171 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444433333332222222111111 11122222 22344544444444445555677777788889999999
Q ss_pred HHHHHHHhcCCCCCCCCCC---------------CC---CCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEE
Q 004513 281 AYRLYEMISRSSSTTNYDG---------------NT---LPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVAL 342 (747)
Q Consensus 281 ~~Ri~~~l~~~~~~~~~~~---------------~~---~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vai 342 (747)
++|+.++++.+++...... .. ..+..|.|+|+||+|+|+. ..+++|+||||+|++||++||
T Consensus 1172 ~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~-~~~~vL~~is~~I~~GekvaI 1250 (1490)
T TIGR01271 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGL 1250 (1490)
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC-CCcceeeccEEEEcCCCEEEE
Confidence 9999999977654321100 00 1134578999999999974 246899999999999999999
Q ss_pred eCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHH
Q 004513 343 VGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKI 422 (747)
Q Consensus 343 vG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~ 422 (747)
||+||||||||+++|+|+++ .+|+|.|||+|+++++.+.+|++|+||||+|.||+|||||||.+...++++++++|++.
T Consensus 1251 vGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEE 1329 (1490)
T ss_pred ECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHH
Confidence 99999999999999999997 79999999999999999999999999999999999999999998778899999999999
Q ss_pred HHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEe
Q 004513 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502 (747)
Q Consensus 423 ~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~it 502 (747)
|++++++..+|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred eCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhHhhh
Q 004513 503 RRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA 548 (747)
Q Consensus 503 H~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~~~ 548 (747)
||++++.+||+|+||++|+|+|.|+|++|++.++.|+++++.....
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRL 1455 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChh
Confidence 9999999999999999999999999999998889999998876544
No 36
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-77 Score=639.36 Aligned_cols=489 Identities=30% Similarity=0.426 Sum_probs=430.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 004513 52 SCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL-AIAFVNC 130 (747)
Q Consensus 52 ~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~l-i~~~~~~ 130 (747)
.++...++...+.+--+.|.|+.++++.|.-+ +.+|.+...+.....-|+..+...+...+..++-+.... ++...++
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 34556677888888999999999999999988 588988877777777777777777777766666544443 3455689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 004513 131 WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (747)
Q Consensus 131 w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~ 210 (747)
|+.++++++++.+++++.....-+-....++..++.++++....+++-+.+++|.|+.|+.+..+|.+.++.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999998888887776666666666777888899999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004513 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (747)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~ 290 (747)
....++.......+......++...+...+..|.+|.|+++..-.++...+.|++.+...+..+.++..-.++++++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 65555444444444455556667778888999999999999888777888889999998999999999999999999987
Q ss_pred CCCCCCC-CCCCCC-CCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceE
Q 004513 291 SSSTTNY-DGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (747)
Q Consensus 291 ~~~~~~~-~~~~~~-~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I 368 (747)
+.+.... +..+.. -..+.+.|+||+|.|. +.+++|+++||++++|+++|+||++|+||||++++|.|||++++|.|
T Consensus 243 ~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred chhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 6553322 112222 3357899999999996 56789999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCC
Q 004513 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (747)
Q Consensus 369 ~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~L 447 (747)
.+||+|+++...+.+|+.||.||||..||+.|+..||.||+ ++++++++.+++.++++++|+.+|+||+|.|||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecC
Q 004513 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 448 SGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt 527 (747)
|||||||+||||+++++|+||+|||+|||||.++|+.|+..|++..+++|+++|+|||+++.+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcchHHHHHHH
Q 004513 528 HDELLATGDLYAELLK 543 (747)
Q Consensus 528 ~~eL~~~~~~~~~l~~ 543 (747)
|+||++.+|.|+++|.
T Consensus 481 h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHHHcCChHHHHhc
Confidence 9999999999999985
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-73 Score=661.93 Aligned_cols=478 Identities=19% Similarity=0.151 Sum_probs=404.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (747)
Q Consensus 36 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~ 115 (747)
+++++++.+++.++..++....+.++..++|.++|+|++++|+.||++ .++|++++|+++|++.+++++.. +..++..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~ 136 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHH
Confidence 334455556778888889999999999999999999999999999999 58999999999999999999864 7778888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHH
Q 004513 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET--LAK 193 (747)
Q Consensus 116 i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~--~~~ 193 (747)
++++++.++++++++|.+++++++++|+.+++..+..++.++..++.++..++.++.+.|.+.|++++|+|+.++ ...
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~ 216 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH 216 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH
Confidence 888888889999999999999998888888877777777778888888899999999999999999999999954 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS 273 (747)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~ 273 (747)
+++.+..++..+...+..........+...+..+..++.+++|++. |.+++|.++++..+...+..|+..+...+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~ 293 (555)
T TIGR01194 217 GAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPI 293 (555)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788777777776665554444333333333333344444555443 7899999999888888888899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCC--CC-C-CCCC-----CCCCCcccEEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEE
Q 004513 274 FDQGRIAAYRLYEMISRSSS--TT-N-YDGN-----TLPSVHGNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVAL 342 (747)
Q Consensus 274 ~~~~~~s~~Ri~~~l~~~~~--~~-~-~~~~-----~~~~~~~~I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vai 342 (747)
+++++.+++|+.++++.+.+ .. + .... ......+.|+++||+|+|++.+ ..++|+|+||+|++|+++||
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~ai 373 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFI 373 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEE
Confidence 99999999999999763211 11 0 1000 0112235799999999997431 23699999999999999999
Q ss_pred eCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHH
Q 004513 343 VGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKI 422 (747)
Q Consensus 343 vG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~ 422 (747)
|||||||||||+++|+|+|+|++|+|.+||.++++++.+++|++++||+|++++|++|+++|+ ..++++++++++++.
T Consensus 374 vG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~ 451 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQR 451 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 235778899999999
Q ss_pred HHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEE
Q 004513 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-LL-MLGRSTII 500 (747)
Q Consensus 423 ~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~-~~-~~~~t~I~ 500 (747)
+++++++..+|+||+|. .+|||||||||+||||++++|+|||||||||+||+++++.+.+.+. .. .+++|+|+
T Consensus 452 ~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 452 LEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred cCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999995 7899999999999999999999999999999999999999988663 33 46899999
Q ss_pred EeeCcchhhcCCEEEEEeCceEeEe
Q 004513 501 IARRLSLIRNADYIAVMDEGRLFEM 525 (747)
Q Consensus 501 itH~l~~i~~aD~I~vl~~G~ive~ 525 (747)
||||+++++.||+|++|++|+|+|.
T Consensus 527 isH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 527 ISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999875
No 38
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-73 Score=718.53 Aligned_cols=469 Identities=19% Similarity=0.261 Sum_probs=389.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004513 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (747)
Q Consensus 55 ~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~w~L~ 134 (747)
..++.++...++..+|+|+++++..++++ .++|++++++++|++.+++.+. .+..++...+.+++++++++. .++
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~---~lg 440 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQ---QLG 440 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 46778888889999999999999999988 5899999999999999999873 444444444444444443332 233
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 004513 135 LITLCT---GPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211 (747)
Q Consensus 135 li~l~~---~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 211 (747)
+++++. +.+++.+..++.+++++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..+...+...+..
T Consensus 441 ~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~ 520 (1622)
T PLN03130 441 VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ 520 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 22333334455666777777888888889999999999999999999999999999888777777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004513 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291 (747)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~~ 291 (747)
....+...+..... ..+.++++|++++..|.+++|.+++++.++.....|+..+...+..+.+++++++|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 521 LLSAFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 55554433322222 1344567889999999999999999888887778889888888999999999999999999765
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCC-ceEEE
Q 004513 292 SSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-GEVLL 370 (747)
Q Consensus 292 ~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~-G~I~i 370 (747)
+....... ......+.|+++|++|+|+.+++.++|+|+||+|++|+++|||||||||||||+++|+|+++|++ |+|.+
T Consensus 599 e~~~~~~~-~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 599 ERVLLPNP-PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI 677 (1622)
T ss_pred ccccccCC-cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE
Confidence 43211111 11112346999999999975445679999999999999999999999999999999999999999 99986
Q ss_pred CCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHH
Q 004513 371 DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (747)
Q Consensus 371 ~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGG 450 (747)
.| +|+||+|+||||++||||||+||++++++++++++++|+++++++.||+|++|.|||+|.+||||
T Consensus 678 ~~-------------~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 678 RG-------------TVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred cC-------------eEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 55 89999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChH
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i-~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~ 529 (747)
|||||+||||+|++|+||||||||||||+++++.+ .++++...+++|+|+|||+++.++.||+|++|++|+|+++|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999876 56888777899999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHh
Q 004513 530 ELLATGDLYAELLKC 544 (747)
Q Consensus 530 eL~~~~~~~~~l~~~ 544 (747)
||++.++.|.++++.
T Consensus 825 eL~~~~~~~~~l~~~ 839 (1622)
T PLN03130 825 ELSNNGPLFQKLMEN 839 (1622)
T ss_pred HHHhcchhHHHHHHh
Confidence 999988888887754
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-73 Score=718.17 Aligned_cols=471 Identities=18% Similarity=0.235 Sum_probs=389.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004513 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (747)
Q Consensus 55 ~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~w~L~ 134 (747)
.+.+.++...++..+|+|+++++..+|++ .++|++++++++|++.+++.+ ..+..++...+.+++++++ +.+.++
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~---l~~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVL---LYQQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 56778888888899999999999999998 589999999999999999976 3344343333333333322 223344
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 004513 135 LITLCTGPFIV---AAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211 (747)
Q Consensus 135 li~l~~~pli~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 211 (747)
+++++.+++++ .+..++.+++++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322222 234456677788888888888999999999999999999999999999999988888777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004513 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291 (747)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~~ 291 (747)
...++...+..... ..+.++++|++++..|.+++|.+++++.++.....|+..+...+..+.+++++++|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 521 LLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 65554433222222 2233467899999999999999999888888888889888888899999999999999999866
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEEC
Q 004513 292 SSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371 (747)
Q Consensus 292 ~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~ 371 (747)
++...... ......+.|+++|++|+|+.+++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|.+.
T Consensus 599 ~~~~~~~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 599 ERILAQNP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred cccccccC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 43221111 111123469999999999754456899999999999999999999999999999999999999998763
Q ss_pred CeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 372 GENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 372 G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
.+|++|+||+|+||||++||||||+||++++++++++++++|+++++++.||+||+|.|||+|.+|||||
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 3566999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHH
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i-~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~e 530 (747)
||||+||||+|++|+||||||||||||+++++.+ .++++...+++|+|+||||++.++.||+|++|++|+|+++|+|+|
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999977 556777778999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHhH
Q 004513 531 LLATGDLYAELLKCE 545 (747)
Q Consensus 531 L~~~~~~~~~l~~~~ 545 (747)
|++.++.|.++++.+
T Consensus 826 L~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 826 LSKSGSLFKKLMENA 840 (1495)
T ss_pred HHhcchhHHHHHHhc
Confidence 999888898887543
No 40
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.3e-73 Score=684.04 Aligned_cols=469 Identities=20% Similarity=0.255 Sum_probs=396.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004513 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (747)
Q Consensus 55 ~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~w~L~ 134 (747)
.+.|.|+...+-..+|+|.+++.-.--.. .+.|+++|-++.|++.++++.. +++.++.....+++..++.|.+.
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~-~t~G~ivNlms~D~~ri~~~~~-----~~h~~w~~Plqi~~~l~lLy~~L 340 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGE-TTVGEIVNLMSVDAQRLSDAAC-----FLHLLWSAPLQIILALYLLYGLL 340 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccC-CCcchhhhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677778889999988886655 4789999999999999998764 67777777777777776666665
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 004513 135 LITLCTGPFIVAAGGI----SNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (747)
Q Consensus 135 li~l~~~pli~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~ 210 (747)
.+..+++.++++++.. +.+++++..++..+..++..+.++|.++||++||.|+||+.|.++..+..++..+.-++.
T Consensus 341 G~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~ 420 (1381)
T KOG0054|consen 341 GPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS 420 (1381)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444 444555555556666677788999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004513 211 SLVQGLGLGFTYGLAICSCALQLWVGRFL-VTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMIS 289 (747)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~l-v~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~ 289 (747)
..+.++...+..+...+..++.| +++. ...+.++....++++.++.....|+..+...+..+.++.++.+|+.+++.
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~~tF--~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~ 498 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSVVTF--VVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLL 498 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888877777666665554444 4444 44566777788888888888888898888888999999999999999998
Q ss_pred CCCCCCCCCC-CCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceE
Q 004513 290 RSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (747)
Q Consensus 290 ~~~~~~~~~~-~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I 368 (747)
.++....... ....+.+..|+++|.+|+|++....+.|+||||+|++|+.+||||++|||||||+.+|+|+++..+|+|
T Consensus 499 ~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v 578 (1381)
T KOG0054|consen 499 SEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV 578 (1381)
T ss_pred CcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE
Confidence 7654322211 122233457999999999986445569999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 369 ~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
.++| .++||||+||+|+|||||||+||.++++++|++++++|+|+++++.||.|+.|.|||||.|||
T Consensus 579 ~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLS 645 (1381)
T KOG0054|consen 579 AVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLS 645 (1381)
T ss_pred EEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCc
Confidence 9999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecC
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i-~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt 527 (747)
|||||||+||||+|+|+||||||||+||||+|+.+.+ .+||+.+.++||+|+|||+++++++||+|+||++|+|+++|+
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gt 725 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGT 725 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccC
Confidence 9999999999999999999999999999999977755 679999999999999999999999999999999999999999
Q ss_pred hHHHhhcchHHHHHHHh
Q 004513 528 HDELLATGDLYAELLKC 544 (747)
Q Consensus 528 ~~eL~~~~~~~~~l~~~ 544 (747)
|+||++.++.|.++...
T Consensus 726 y~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 726 YEELLKSGGDFAELAHE 742 (1381)
T ss_pred HHHHHhcchhHHHHhhc
Confidence 99999999999888433
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.9e-73 Score=616.25 Aligned_cols=499 Identities=23% Similarity=0.305 Sum_probs=448.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 004513 28 WLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSE 107 (747)
Q Consensus 28 ~l~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~ 107 (747)
++..+.+..+++.+...++.+++.....+++.++..++..++|...++.+..- +..|+=..- -+|.++++.+++.
T Consensus 61 TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~----~~~g~~~Q~-LrDL~qvR~Fltg 135 (580)
T COG4618 61 TLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR----RGSGDGLQP-LRDLDQVRQFLTG 135 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh----cCCCccccc-hhhHHHHHHHHcC
Confidence 34444444455555566788889999999999999999999999998777763 234443333 3899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 004513 108 KVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFT 187 (747)
Q Consensus 108 ~l~~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~ 187 (747)
.-+..+.+...+.+.+++.|.+++++++++++...+++.+.++-.+..++..++..+...+.+....-+.+|.++|++.+
T Consensus 136 ~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMG 215 (580)
T COG4618 136 TGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMG 215 (580)
T ss_pred CCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 88888888888888889999999999999999988888888888888888888888888899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHH
Q 004513 188 NETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQA 267 (747)
Q Consensus 188 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~ 267 (747)
+.....++|.+....+.....+.+-..+...+++..+-++....++.+|+|++..|++|.|.+++..........|+.++
T Consensus 216 M~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~a 295 (580)
T COG4618 216 MLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLA 295 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHH
Confidence 99999999999999999998888888888889999999999999999999999999999999999877777777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCC
Q 004513 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG 347 (747)
Q Consensus 268 ~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sG 347 (747)
...|.++..++.|.+|+.+++...+... ..-..|..++.+.++++++.=|. .++++|+||||++++|+.+|||||||
T Consensus 296 I~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~--~~m~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 296 IANWKQFVAARQSYKRLNELLAELPAAA--ERMPLPAPQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccc--CCCCCCCCCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCC
Confidence 9999999999999999999998765433 22445667889999999997654 46799999999999999999999999
Q ss_pred CCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHh-cCCCCCHHHHHHHHHHHHHH
Q 004513 348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA-YGRDATLDQIEEAAKIAHAH 426 (747)
Q Consensus 348 sGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~-~g~~~~~~~i~~a~~~~~l~ 426 (747)
||||||.++|.|..+|.+|.|++||-|+++++.+.+-++|||.||+..||+|||+|||+ |+.+.+++.+.+|++.++.|
T Consensus 373 SGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvH 452 (580)
T COG4618 373 SGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVH 452 (580)
T ss_pred ccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChH
Confidence 99999999999999999999999999999999999999999999999999999999997 66689999999999999999
Q ss_pred HHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCc
Q 004513 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRL 505 (747)
Q Consensus 427 ~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l 505 (747)
|.|..||+||||.|||+|..|||||||||+||||+|.||.+++||||-|+||.+.|+.+.++|...+ +|.|+|+||||.
T Consensus 453 elIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 453 ELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred HHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 9999999999999999999999999999999999999999999999999999999999999987764 689999999999
Q ss_pred chhhcCCEEEEEeCceEeEecChHHHhhc
Q 004513 506 SLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 506 ~~i~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+.+..+|+|+||++|++...|+-+|.+++
T Consensus 533 s~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 533 SALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999998874
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-69 Score=625.11 Aligned_cols=471 Identities=18% Similarity=0.205 Sum_probs=372.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 43 VFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122 (747)
Q Consensus 43 ~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~ 122 (747)
.+++.++..++....+.++..++|.++|++++++|++||++ .++|++++|+++|++.+...+. .++.++.+++.+++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~ 138 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGS 138 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34566778888888999999999999999999999999999 5899999999999999998765 477788888888999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHHH
Q 004513 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE---TLAKYSYATS 199 (747)
Q Consensus 123 li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e---~~~~~~~~~~ 199 (747)
++++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+.
T Consensus 139 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~ 217 (547)
T PRK10522 139 AAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPD 217 (547)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHH
Confidence 99999999999999999999988888888888888888889999999999999999999995 4443 3556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 200 LQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRI 279 (747)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (747)
.++..+...+..........+...+..+..++.+++++.+ ..+ +.+.+..+..+......|+..+...+..++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 294 (547)
T PRK10522 218 AQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQV 294 (547)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665555444333322222222222222222333222 112 2222222222233344578888888899999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhc
Q 004513 280 AAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (747)
Q Consensus 280 s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 359 (747)
+.+|+.++++.+++......... +..+.|+++||+|+|++ +.++|+|+||+|++|+++|||||||||||||+++|+|
T Consensus 295 a~~ri~~l~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 295 AFNKLNKLALAPYKAEFPRPQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred HHHHHHHHhcccccccccccccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999998765432211111111 11357999999999963 3469999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcccccccc
Q 004513 360 FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439 (747)
Q Consensus 360 ~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~ 439 (747)
+|+|++|+|.+||.++++++.+.+|++|+||+|++++|++|++|| +.+.++++++++++.+++.+++.. ++|.
T Consensus 372 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--- 444 (547)
T PRK10522 372 LYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR--- 444 (547)
T ss_pred CCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC---
Confidence 999999999999999999999999999999999999999999999 445667777777777665554432 3331
Q ss_pred ccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEE
Q 004513 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 440 vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
.+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+.+.. .++|+|+||||+++++.||+|++|
T Consensus 445 --~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l 522 (547)
T PRK10522 445 --ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEM 522 (547)
T ss_pred --CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEE
Confidence 2489999999999999999999999999999999999999999999886543 489999999999999999999999
Q ss_pred eCceEeEe-cChHHH
Q 004513 518 DEGRLFEM-GTHDEL 531 (747)
Q Consensus 518 ~~G~ive~-Gt~~eL 531 (747)
++|+++|. |++.+-
T Consensus 523 ~~G~i~e~~~~~~~~ 537 (547)
T PRK10522 523 RNGQLSELTGEERDA 537 (547)
T ss_pred ECCEEEEecCCchhh
Confidence 99999987 444443
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.6e-66 Score=655.96 Aligned_cols=476 Identities=19% Similarity=0.230 Sum_probs=385.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004513 52 SCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCW 131 (747)
Q Consensus 52 ~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~w 131 (747)
+...+.+.++...++..+|+|+++++..++++ .++|+++|++++|++.+.+... .+..++...+.+++++++++....
T Consensus 380 ~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g 457 (1522)
T TIGR00957 380 HICFVSGMRIKTAVMGAVYRKALVITNSARKS-STVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLG 457 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456788999999999999999999999998 5899999999999999888553 333333333333333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 004513 132 QIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211 (747)
Q Consensus 132 ~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 211 (747)
..+++.++++++++.+..++.+.+++..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+......+...+..
T Consensus 458 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~ 537 (1522)
T TIGR00957 458 PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSA 537 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444445555556667778888888888899999999999999999999999999999999888877777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004513 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTH--NKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMIS 289 (747)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~--g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~ 289 (747)
....+......... ..+.++.++.+++.. +.++.+.+++++.++..+..|+..+...+..+.+++++.+|+.++++
T Consensus 538 ~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~ 615 (1522)
T TIGR00957 538 YLHAVGTFTWVCTP--FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLS 615 (1522)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55444322221111 112223345666653 56788888887766666777899999999999999999999999998
Q ss_pred CCCCCCCC-CCCCCCC-CcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCce
Q 004513 290 RSSSTTNY-DGNTLPS-VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367 (747)
Q Consensus 290 ~~~~~~~~-~~~~~~~-~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~ 367 (747)
.+++.... ......+ ..+.|+++|++|+|+.. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~ 694 (1522)
T TIGR00957 616 HEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694 (1522)
T ss_pred CcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE
Confidence 65432211 0011111 12369999999999642 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCC
Q 004513 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (747)
Q Consensus 368 I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~L 447 (747)
|.++| +|+||+|+||+|++||+|||.||.++++++++++++.|++.+++..+|+|++|.+|++|.+|
T Consensus 695 i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L 761 (1522)
T TIGR00957 695 VHMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNL 761 (1522)
T ss_pred EEECC-------------EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCC
Confidence 99998 69999999999999999999999888888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeE
Q 004513 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD---LLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524 (747)
Q Consensus 448 SGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~---~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive 524 (747)
||||||||+||||++++|+|||||||||+||+++++.+.+.+. ...+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 9999999999999999999999999999999999999988774 3457899999999999999999999999999999
Q ss_pred ecChHHHhhcchHHHHHHHhH
Q 004513 525 MGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 525 ~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
+|+++|+.+..+.|.+++..+
T Consensus 842 ~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 842 MGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred eCCHHHHHhcchhHHHHHHhh
Confidence 999999998888888877543
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.4e-64 Score=631.49 Aligned_cols=473 Identities=18% Similarity=0.188 Sum_probs=390.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 49 IEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFV 128 (747)
Q Consensus 49 ~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~ 128 (747)
...+.....+.++...+...+|+|+++++...+++ .++|+++|++++|++.+.+.+... ..++...+.+++++++++.
T Consensus 141 ~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~ 218 (1490)
T TIGR01271 141 PAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWE 218 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34445556677777778888899999999999998 589999999999999999976533 3333444445555555555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 004513 129 NCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208 (747)
Q Consensus 129 ~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~ 208 (747)
...+.+++.++++++++.+..++.+++.+..++.+...++..+.+.|.++||++||.+++|+.+.+++.+......+...
T Consensus 219 ~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~ 298 (1490)
T TIGR01271 219 LLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTR 298 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777778888888888888888888889999999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004513 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLN-QAATNFYSFDQGRIAAYRLYEM 287 (747)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~s~~Ri~~~ 287 (747)
+...+..+...+..... ..+.++.+++|.+..+ .+.+.+++++.++.+...++. .+...+..+.++.++++||.++
T Consensus 299 ~~~~~~~~~~~~~~~~~--~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~f 375 (1490)
T TIGR01271 299 KIAYLRYFYSSAFFFSG--FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDF 375 (1490)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665544333332222 2334455667766644 578888887766666655653 5677778889999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCC-------------------------------CCCCceeeeeEEecC
Q 004513 288 ISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSR-------------------------------PEIPILSGFYLTVPA 336 (747)
Q Consensus 288 l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~-------------------------------~~~~vL~~isl~i~~ 336 (747)
+..++...... ......|+++|++|.|+.. ...++|+|+||+|++
T Consensus 376 L~~~e~~~~~~----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~ 451 (1490)
T TIGR01271 376 LCKEEYKTLEY----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEK 451 (1490)
T ss_pred hcCcccccccc----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECC
Confidence 98654321110 0112359999999999531 013689999999999
Q ss_pred CeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHH
Q 004513 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQI 416 (747)
Q Consensus 337 Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i 416 (747)
|++++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||.||..++++++
T Consensus 452 G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 452 GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 999999999999999999999999999999999999 6999999999999999999999987778889
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCC
Q 004513 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE-ALDLLMLG 495 (747)
Q Consensus 417 ~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~-~i~~~~~~ 495 (747)
.++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||++++|+||||||||||||+++++.+.+ +++...++
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~ 598 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 67777789
Q ss_pred CeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHH
Q 004513 496 RSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543 (747)
Q Consensus 496 ~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~ 543 (747)
+|+|+|||+++.+..||+|++|++|+|++.|+++++.+..+.|...+.
T Consensus 599 ~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred CeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 999999999999999999999999999999999999987677766653
No 45
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=7.9e-64 Score=589.37 Aligned_cols=460 Identities=14% Similarity=0.090 Sum_probs=389.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 41 GGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFF 120 (747)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i 120 (747)
++..+..++..++......++..++|.++|++....++.|||+ ++|++.+|+++|++.+.+.+...+..++..++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii 227 (659)
T TIGR00954 150 FINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVI 227 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666677788888999999999988899999986 67999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 004513 121 SGLAIAFV-NCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATS 199 (747)
Q Consensus 121 ~~li~~~~-~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~ 199 (747)
++++.++. ++|.+++++++.+|+.+++..++.+.+.+..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+.
T Consensus 228 ~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~ 307 (659)
T TIGR00954 228 LYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSS 307 (659)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHH
Confidence 88887776 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----ccccHHHHHHHHH-H---HHHHHHHHHHHH
Q 004513 200 LQATLRYGILISLVQGLGLGFTYGLAIC--SCALQLWVGRFLVT-H----NKAHGGEIVTALF-A---VILSGLGLNQAA 268 (747)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~lv~-~----g~~~~G~l~~~~~-~---~~~~~~~l~~~~ 268 (747)
.++..+...+...+.+....+..++... ..++.++.|...+. . |.++.|.+++.+. + +..+..++..++
T Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~ 387 (659)
T TIGR00954 308 FYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLM 387 (659)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888777776666432 23333334443332 2 6788888766333 2 223355788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC---------CC-CC--------------CCCCCCcccEEEEeEEEEecCCCCC
Q 004513 269 TNFYSFDQGRIAAYRLYEMISRSSSTT---------NY-DG--------------NTLPSVHGNIEFRNVYFSYLSRPEI 324 (747)
Q Consensus 269 ~~~~~~~~~~~s~~Ri~~~l~~~~~~~---------~~-~~--------------~~~~~~~~~I~~~~v~f~y~~~~~~ 324 (747)
..+..++++..+.+|++++++.+++.. .. .+ .......+.|+++||+|+|++ +.
T Consensus 388 ~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~ 465 (659)
T TIGR00954 388 LAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GD 465 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CC
Confidence 889999999999999999997532110 00 00 001112356999999999963 34
Q ss_pred CceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHH
Q 004513 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (747)
Q Consensus 325 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireN 404 (747)
++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ |++|+||+|+|++|++|++||
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~en 534 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQ 534 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHH
Confidence 699999999999999999999999999999999999999999999875 568999999999999999999
Q ss_pred HhcCC--------CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCC
Q 004513 405 IAYGR--------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (747)
Q Consensus 405 i~~g~--------~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsa 476 (747)
|.++. ..++++++++++.+++++++.. |.||||..+ .+.+|||||||||+||||++++|+++|||||||+
T Consensus 535 i~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 535 IIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred HhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 99873 3467889999999999999887 999999976 5779999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 477 LDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 477 LD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
||+++++.+.+.+++. ++|+|+||||++.++.||+|++|+.
T Consensus 613 LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 613 VSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999998774 8999999999999999999999963
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.2e-61 Score=606.10 Aligned_cols=479 Identities=17% Similarity=0.194 Sum_probs=390.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 48 WIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDT-YGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIA 126 (747)
Q Consensus 48 ~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~-~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~ 126 (747)
....+...+.+.++...+...+|+|+++++...+.. ..++|+++|.+++|++.+.+++. .+..++...+.++++++++
T Consensus 303 ~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL 381 (1560)
T PTZ00243 303 HRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLL 381 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334455567788888899999999999999987752 13689999999999999999984 3445555555666666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 004513 127 FVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRY 206 (747)
Q Consensus 127 ~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~ 206 (747)
+.+..+.+++.++++++++.+..++.+++.+..++..+..++..+.+.|.++||++||.+++|+.+.+++.+..+...+.
T Consensus 382 ~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~ 461 (1560)
T PTZ00243 382 SRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRY 461 (1560)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666777777777778888888889999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 207 GILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYE 286 (747)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~ 286 (747)
.++......+...+......+.. ++.+++|.+..+.++++.+++++.++.....|+..+...+..+.++.++++||.+
T Consensus 462 l~~~~~~~~~~~~~~~~~p~l~~--~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~ 539 (1560)
T PTZ00243 462 LRDVQLARVATSFVNNATPTLMI--AVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIST 539 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666655544444433333 2345678888899999999999988888888999999999999999999999999
Q ss_pred HhcCCCCCC----C--C---------C--C-----C----------CC---------------------------CCCcc
Q 004513 287 MISRSSSTT----N--Y---------D--G-----N----------TL---------------------------PSVHG 307 (747)
Q Consensus 287 ~l~~~~~~~----~--~---------~--~-----~----------~~---------------------------~~~~~ 307 (747)
++..++... . . . . . .. ....+
T Consensus 540 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1560)
T PTZ00243 540 FLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSP 619 (1560)
T ss_pred HHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 997653100 0 0 0 0 0 00 00112
Q ss_pred cEEEEeEEEEecCC-------------------------------------CCCCceeeeeEEecCCeEEEEeCCCCCCH
Q 004513 308 NIEFRNVYFSYLSR-------------------------------------PEIPILSGFYLTVPAKKAVALVGRNGSGK 350 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-------------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGK 350 (747)
.+.++|++|.++.. .++++|+|+||+|++|++++|+|||||||
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGK 699 (1560)
T PTZ00243 620 SVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGK 699 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcH
Confidence 46777877765310 13468999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 004513 351 SSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFIS 430 (747)
Q Consensus 351 STLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~ 430 (747)
|||+++|+|+++|++|+|.+++ +||||+|+||+|++||+|||.|+...+.+++.++++.|+++++++
T Consensus 700 STLL~~i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~ 766 (1560)
T PTZ00243 700 STLLQSLLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLA 766 (1560)
T ss_pred HHHHHHHhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999998753 799999999999999999999988777778999999999999999
Q ss_pred hccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCCeEEEEeeCcchhh
Q 004513 431 SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLMLGRSTIIIARRLSLIR 509 (747)
Q Consensus 431 ~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~-~~i~~~~~~~t~I~itH~l~~i~ 509 (747)
.+|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+. +++....+++|+|+|||+++.+.
T Consensus 767 ~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~ 846 (1560)
T PTZ00243 767 QLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP 846 (1560)
T ss_pred HhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999887765 45655567899999999999999
Q ss_pred cCCEEEEEeCceEeEecChHHHhhcchHHHHHHH
Q 004513 510 NADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543 (747)
Q Consensus 510 ~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~ 543 (747)
.||+|++|++|+++++|+++++++. +.|..+..
T Consensus 847 ~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~ 879 (1560)
T PTZ00243 847 RADYVVALGDGRVEFSGSSADFMRT-SLYATLAA 879 (1560)
T ss_pred hCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHH
Confidence 9999999999999999999999875 35666553
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5e-53 Score=448.25 Aligned_cols=238 Identities=21% Similarity=0.344 Sum_probs=222.7
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
|.|+++|++++|+. ++.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 46899999999963 23569999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 387 i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
|+||||+|.+|++|+++|+.+....++++++++++.+++.+++..+|+||+|.++++|.+||||||||++||||++++|+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997544567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhHh
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~~ 546 (747)
||||||||++||+.+++.+++.|++...++|+|+|||+++++..||+|++|++|++++.|++++|++..+.|++++....
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 99999999999999999999999987778999999999999999999999999999999999999998888888876543
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-52 Score=410.20 Aligned_cols=213 Identities=27% Similarity=0.462 Sum_probs=188.1
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC-CCHHHhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN-LKLEWLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~-~~~~~lr~~ 386 (747)
-|+++|++++|+ +..||+|||++|++||+++|+||||||||||+++|.|+-+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999995 4679999999999999999999999999999999999999999999999987743 377889999
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC----CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
+|+|+|+..||+ .|+.||++++- ..++++ ..+.++++++.+.....| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999996 89999999873 333333 334455565555555554 5699999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||||..+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998875 57899999999999987 999999999999999999999875
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-49 Score=430.44 Aligned_cols=223 Identities=30% Similarity=0.445 Sum_probs=196.5
Q ss_pred CCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC-
Q 004513 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN- 377 (747)
Q Consensus 304 ~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~- 377 (747)
+..+.|+++|++++|+. ...++|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 76 ~~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 34567999999999963 23579999999999999999999999999999999999997 579999999999973
Q ss_pred -CCHHHhhcceEEEeccCccccccHHHHHhcCC---CCCHHH-----HHHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 378 -LKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQ-----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 378 -~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~~~~~-----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
.....+|+.++||||+|++|++|++|||.|+. ..++++ +.++++.++ |++++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCC
Confidence 45567899999999999999999999999864 233333 334444444 34556788999999999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
|||||||+||||++++|+||||||||+|||+++.+.++++|+++.+++|+|+|||+++++.. ||+|+||++|+|++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998888999999999999987 99999999999999999
Q ss_pred hHHHhhc
Q 004513 528 HDELLAT 534 (747)
Q Consensus 528 ~~eL~~~ 534 (747)
++++...
T Consensus 308 ~~~l~~~ 314 (329)
T PRK14257 308 TKTIFIH 314 (329)
T ss_pred HHHHhcC
Confidence 9999864
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=412.56 Aligned_cols=216 Identities=32% Similarity=0.520 Sum_probs=188.2
Q ss_pred EEEEeEEEEecCC--CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hh
Q 004513 309 IEFRNVYFSYLSR--PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WL 383 (747)
Q Consensus 309 I~~~~v~f~y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~l 383 (747)
|++++|++.|+.. +...+|+||||+|++||++||||+||||||||++++.++-+|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 135689999999999999999999999999999999999999999999999998887754 56
Q ss_pred hcceEEEeccCcccc-ccHHHHHhcCC---CCCHHHH----HHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 384 RSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 384 r~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i----~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
|++||+++|++.|++ .||.+|++|.. ..+++++ .+.++.+ |+....+....+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 899999999999996 89999999864 3444443 3344444 344444555678999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
+|||||+.+|+|||.|||||||||++.+.|.+.|++.. -|-|+++|||.|+.++. ||||+||++|+|+|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998764 47899999999999987 9999999999999999999998
Q ss_pred hcc
Q 004513 533 ATG 535 (747)
Q Consensus 533 ~~~ 535 (747)
...
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 753
No 51
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-50 Score=404.15 Aligned_cols=213 Identities=32% Similarity=0.513 Sum_probs=188.7
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+|+||+++|. +..+++|+||+|++||++.++|||||||||++++|.|+++|++|+|++||.++++++...+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999995 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCHHH----HHHHHHHHHHH--HHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAH--TFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~~~----i~~a~~~~~l~--~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
||-|+..||+ .||.|||.+-- ..++++ +.+.++.++|. ++... -...|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----------yP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR-----------YPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc-----------CchhcCcchhhHHHHH
Confidence 9999999995 99999998742 344444 44555555543 23333 3457999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchh-hcCCEEEEEeCceEeEecChHHHhhcc
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i-~~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
|||+.+|+|+|+|||++||||.++..+|+-+.++. -++|+|+|||+++++ +.+|||+||++|+|++.|+|++++++.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999887664 489999999999876 569999999999999999999999863
No 52
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.2e-48 Score=405.67 Aligned_cols=233 Identities=46% Similarity=0.749 Sum_probs=213.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999632 357999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCE
Q 004513 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~i 467 (747)
|++|++++|+.|++|||.++. ....+++.+.++..++.+.+..+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999865 3445667777777888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHH
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~ 542 (747)
|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999998877899999999999998899999999999999999999988877777655
No 53
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.9e-48 Score=404.56 Aligned_cols=240 Identities=31% Similarity=0.469 Sum_probs=219.0
Q ss_pred CCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh
Q 004513 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 304 ~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l 383 (747)
...+.|+++|++++|++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 346789999999999632 2469999999999999999999999999999999999999999999999999998888888
Q ss_pred hcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 384 RSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 384 r~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
|+.|+||+|++++|++|++||+.+......++++++++.+++.+.+..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654344567788888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhc-chHHHHHH
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELL 542 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~-~~~~~~l~ 542 (747)
+|++|||||||++||+.++..+.+.++++..++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++.|.+++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999887778999999999999988999999999999999999999875 45677666
Q ss_pred Hh
Q 004513 543 KC 544 (747)
Q Consensus 543 ~~ 544 (747)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 43
No 54
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=386.04 Aligned_cols=218 Identities=32% Similarity=0.510 Sum_probs=197.4
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCC-----ceEEECCeecCC--CC
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-----GEVLLDGENIKN--LK 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~-----G~I~i~G~~i~~--~~ 379 (747)
..++++|+++.|+ +..+|+|||+.|++++++|++|||||||||+++++.|+.+... |+|.++|+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999995 4679999999999999999999999999999999999999886 999999999976 46
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCC---CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
.-.+|++||.|+|.|.-|+.||+||+.||. ... ++.++++++.++|++.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 889999999999999999999999999984 111 3557788999999887753 23566788999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||+||||||.-+|+|||||||||||||.+..+|.+.|.++.++-|+|+|||.++-+.. +|+...+-.|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999987755 999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 865
No 55
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-47 Score=396.27 Aligned_cols=232 Identities=50% Similarity=0.772 Sum_probs=212.7
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999952 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCE
Q 004513 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~i 467 (747)
|++|++.+|+.|++||+.++. ..+++++.++++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 4456667778888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHH
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~ 542 (747)
|||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......|..++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999988766889999999999998899999999999999999999887666665544
No 56
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-47 Score=394.85 Aligned_cols=226 Identities=49% Similarity=0.774 Sum_probs=209.1
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
+.|+++|++++|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999952 2469999999999999999999999999999999999999999999999999988887788899
Q ss_pred eEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 387 i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
++|++|++.+|.+|++||+.++. ....+++.++++.+++.+++..+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875 34556778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhc
Q 004513 466 SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999888778999999999999888999999999999999998887654
No 57
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-47 Score=396.09 Aligned_cols=230 Identities=49% Similarity=0.813 Sum_probs=210.6
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 236999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCE
Q 004513 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~i 467 (747)
|++|++.+|..|++||+.++. ....+++.+.++.+++.+.+..+|.|+++.++....+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 4455667777788888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHH
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~ 539 (747)
|||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++....+.|.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 999999999999999999999998877899999999999998899999999999999999999877655444
No 58
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-47 Score=392.07 Aligned_cols=220 Identities=33% Similarity=0.522 Sum_probs=206.0
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
+.|+++|++++|+.. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999632 3479999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 387 i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
++|++|++.+|++|++|||.+......+++.++++..++.+++..+|.|+++.+++.+.+||||||||++||||++++|+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998766566778888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecC
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt 527 (747)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999998877899999999999998899999999999998876
No 59
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3e-47 Score=395.47 Aligned_cols=233 Identities=60% Similarity=0.941 Sum_probs=210.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++..+.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999996433357999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCE
Q 004513 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~i 467 (747)
|++|++.+|+.|++||+.++. ....+++.+.++.+++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 3445566777777888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHH
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l 541 (747)
|||||||++||+.+++.+.+.|+.+.+++|+|++||+++.+..||+|++|++|++++.|+.+++......+..+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHH
Confidence 99999999999999999999998877789999999999999899999999999999999999887765444443
No 60
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.9e-47 Score=393.05 Aligned_cols=213 Identities=31% Similarity=0.498 Sum_probs=190.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.+||.++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999995 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCc-cccccHHHHHhcCC-CC-------C---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 388 GLVTQEPA-LLSLSIRDNIAYGR-DA-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 388 ~~v~Q~~~-lf~~TireNi~~g~-~~-------~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
|||||++. -|..||+|-+.+|+ ++ + .+.+.++++.+++.++. ...-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 99999965 56789999999996 21 2 23466778887665553 334467999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchh-hcCCEEEEEeCceEeEecChHHHh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i-~~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
.|||||+++|+||+||||||+||...+..+++.++++. +++|+|+|.|+++.+ +.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999998886 479999999999876 569999999999999999999988
Q ss_pred hc
Q 004513 533 AT 534 (747)
Q Consensus 533 ~~ 534 (747)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 61
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.1e-46 Score=383.19 Aligned_cols=218 Identities=42% Similarity=0.651 Sum_probs=200.1
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999532 25699999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 388 GLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 388 ~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
+|++|++.+|..|++||+.++. ....+++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999998865 345567778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEec
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~G 526 (747)
+|||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988889999999999998764
No 62
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-44 Score=378.53 Aligned_cols=473 Identities=19% Similarity=0.193 Sum_probs=353.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI 113 (747)
Q Consensus 34 l~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i 113 (747)
.++..+....++.+.+........|+.+..++|.++.++++..|+.-+++ -.+++++.++++|+..|. +-...++.+.
T Consensus 52 ~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHH
Confidence 34555555555666666677778899999999999999999999999999 489999999999999998 5556778889
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch--HH
Q 004513 114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE--TL 191 (747)
Q Consensus 114 ~~i~~~i~~li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e--~~ 191 (747)
+..+.++++.+.+.++++++.+++++.+.+.++...+......+..+..++...+.....+..++|.+.++.+..- ..
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 9999999999999999999998888777777777777777777777888888899999999999999998876532 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 192 AKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNF 271 (747)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~l~~~~~~~ 271 (747)
..+.|...-+...+................+.+.+....+.+|+... .+.-+.....++...+...-.|+.+.+..+
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~---~~w~st~~a~tivlvlLflr~pL~s~vgil 286 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS---LGWASTNVAATIVLVLLFLRTPLLSAVGIL 286 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHhhHHHHHHhhh
Confidence 23333333233322211111111111122222222222333333221 222233323332223333445899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHH
Q 004513 272 YSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKS 351 (747)
Q Consensus 272 ~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKS 351 (747)
+.+..|.+|.++|.++-..++...-......|+. ..|+++||.|.|+.. ..-+..||++|++||+|-|+|.||||||
T Consensus 287 P~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHH
Confidence 9999999999999887554332221222223332 369999999999632 2568899999999999999999999999
Q ss_pred HHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHH
Q 004513 352 SIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFI 429 (747)
Q Consensus 352 TLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~--~~~~~~i~~a~~~~~l~~~i 429 (747)
|++++|.|+|.|++|+|++||.++..-+++++|+-++-|+-|.|||..++ |. .++++.+..-++...+....
T Consensus 364 T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999998543 22 36777777777766655443
Q ss_pred HhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEeeCcch
Q 004513 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-LL-MLGRSTIIIARRLSL 507 (747)
Q Consensus 430 ~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~-~~-~~~~t~I~itH~l~~ 507 (747)
. +-+|--+ ...||-|||.|+|+--|++-+-|||+|||=-+--||.-++.+.+.+- .+ ..|||+|.|||+-.+
T Consensus 438 s-l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 438 S-LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred c-ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 2 2222111 24699999999999999999999999999999999999999977653 22 369999999999999
Q ss_pred hhcCCEEEEEeCceEeEec
Q 004513 508 IRNADYIAVMDEGRLFEMG 526 (747)
Q Consensus 508 i~~aD~I~vl~~G~ive~G 526 (747)
...|||++.|++|+++|.-
T Consensus 512 F~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 512 FIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhHHHHHHHhcCceeecc
Confidence 9999999999999999853
No 63
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.7e-47 Score=379.79 Aligned_cols=224 Identities=32% Similarity=0.498 Sum_probs=191.3
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hh
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WL 383 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~l 383 (747)
..|++++|+++|. ++.|++||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 3599999999994 56799999999999999999999999999999999999999999999999999998864 56
Q ss_pred hcceEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHH----HHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 384 RSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEA----AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 384 r~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a----~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
|+++|+++|+..||+ .||+||+.|.- ..++..+++. ++.++|.... ..--...|||||+.|
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~----------~~~~PsELSGGM~KR 153 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA----------ADLYPSELSGGMRKR 153 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----------hhhCchhhcchHHHH
Confidence 999999999999995 89999999853 4455555442 3334333331 112346799999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
+|||||+.-||+|+++|||||||||.+...|.+.|+++. -+.|+|+|||+++++.. ||||+++.+|+|+..||++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998775 37899999999998875 899999999999999999999
Q ss_pred hhcchH-HHHHHH
Q 004513 532 LATGDL-YAELLK 543 (747)
Q Consensus 532 ~~~~~~-~~~l~~ 543 (747)
.+.+.. .+++++
T Consensus 234 ~~sd~P~v~qf~~ 246 (263)
T COG1127 234 LASDDPWVRQFFN 246 (263)
T ss_pred HhCCCHHHHHHhc
Confidence 987554 444443
No 64
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=403.37 Aligned_cols=211 Identities=30% Similarity=0.491 Sum_probs=186.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++||+++|++ ..+|+||||+|+.||+++|+||||||||||+++|.|+.+|++|+|.|||.++++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 5899999999953 12999999999999999999999999999999999999999999999999999999875 689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
|+|+|+..||+ .||+|||.|+.. .. ++++.++++..++.+.++..| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999996 899999999852 22 445666777766666655554 569999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+++|+++|||||+|+||++.+..+...|+++. -+.|+|.|||+-.++. .+|||+||++|+|.+.|++.|+..+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999999999999999988887764 3689999999987765 5999999999999999999999865
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.6e-46 Score=407.82 Aligned_cols=215 Identities=29% Similarity=0.455 Sum_probs=185.1
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH---hh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~---lr 384 (747)
|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999999999999998887544 57
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
++||||+|++.+|. .|++||+.++. ..+.+ ++.++++.+++ ..........||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL-----------~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL-----------GDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 89999999999995 89999999753 22332 23344444433 33344556789999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
|||||+.+|+|||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988753 7899999999999865 99999999999999999999976
Q ss_pred c
Q 004513 534 T 534 (747)
Q Consensus 534 ~ 534 (747)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 66
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-46 Score=384.62 Aligned_cols=220 Identities=32% Similarity=0.483 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH---HHhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~---~~lr~ 385 (747)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 47899999995 3469999999999999999999999999999999999999999999999999987664 56788
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
.|+||+|++.+|. .|++||+.++. ..+.++..+.+ .+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV-----LEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 9999999999997 59999998753 12332222111 1112222 33333455567899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhcchH
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDL 537 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~~~~ 537 (747)
|+++|+||||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++......
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 230 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDP 230 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCCCh
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999999998764433
Q ss_pred H
Q 004513 538 Y 538 (747)
Q Consensus 538 ~ 538 (747)
|
T Consensus 231 ~ 231 (235)
T cd03261 231 L 231 (235)
T ss_pred h
Confidence 3
No 67
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=399.22 Aligned_cols=221 Identities=23% Similarity=0.434 Sum_probs=188.1
Q ss_pred cEEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC-------
Q 004513 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL------- 378 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~------- 378 (747)
.|+++|++|+|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999996321 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHhhcceEEEeccC--ccccccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhcccccc-ccccCC
Q 004513 379 ---------KLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRA 443 (747)
Q Consensus 379 ---------~~~~lr~~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~ 443 (747)
....+|++|+||+|+| .+|+.|++|||.|+. ..+.++..+ . ..+.+..+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3457889999999998 689999999999874 223333221 1 12334443 554 456788
Q ss_pred CCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchh-hcCCEEEEEeCce
Q 004513 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RNADYIAVMDEGR 521 (747)
Q Consensus 444 g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i-~~aD~I~vl~~G~ 521 (747)
+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998764 578999999999987 5699999999999
Q ss_pred EeEecChHHHhhcc
Q 004513 522 LFEMGTHDELLATG 535 (747)
Q Consensus 522 ive~Gt~~eL~~~~ 535 (747)
|++.|+++++....
T Consensus 254 i~~~g~~~~~~~~~ 267 (320)
T PRK13631 254 ILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEeCCHHHHhcCH
Confidence 99999999987654
No 68
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=403.74 Aligned_cols=213 Identities=30% Similarity=0.517 Sum_probs=188.3
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
..|+++||+++|+ +..+|+||||+|++||+++++|||||||||++++|.||..|++|+|.+||.++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999995 56899999999999999999999999999999999999999999999999999998875 568
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCC----CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~----~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
||+|+|+..||+ .||+|||.||.. ..+ +++.++++.+++.++-. .+...|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHH
Confidence 999999999995 999999999953 222 35667777776665444 4456799999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchh-hcCCEEEEEeCceEeEecChHHHhhc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i-~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||||..+|++||||||.||||.+-+..++..++++. .|.|.|+|||+-+++ ..+|||+||++|+|.+.|+++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999988877653 489999999998765 56999999999999999999999865
Q ss_pred c
Q 004513 535 G 535 (747)
Q Consensus 535 ~ 535 (747)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 3
No 69
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-46 Score=380.94 Aligned_cols=196 Identities=31% Similarity=0.466 Sum_probs=170.1
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.+++++|++.|+. ..+|+||||+|++||+++||||||||||||+++|.|+.+|++|+|.++|.++..... .+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~-----~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGP-----DI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCC-----CE
Confidence 4889999999953 679999999999999999999999999999999999999999999999998855443 79
Q ss_pred EEEeccCcccc-ccHHHHHhcCCCC---C----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRDA---T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~~---~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+||+|++.||+ .||+||+.++... + .+++.+.++.++|.++-... ..+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~-----------P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKY-----------PHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcC-----------ccccChHHHHHHHHHH
Confidence 99999999998 8999999998632 2 23456666777666555544 4569999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeC--ceE
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDE--GRL 522 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~--G~i 522 (747)
||+.+|+||+||||++|||+.|+..+++.+.++. .++|+++|||+++++- .+|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999876653 4699999999998865 5999999999 445
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.1e-46 Score=382.96 Aligned_cols=209 Identities=34% Similarity=0.508 Sum_probs=178.7
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC-----CCCCceEEECCeecCCCC--HH
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY-----DPTLGEVLLDGENIKNLK--LE 381 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~-----~p~~G~I~i~G~~i~~~~--~~ 381 (747)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999953 46999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HhhcceEEEeccCccccccHHHHHhcCCC---C-C----HHHHHHHHHHHHHHHHHHhccccccccccCC--CCCCCHHH
Q 004513 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRA--GLALTEEQ 451 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~--g~~LSGGQ 451 (747)
.+|++|+|++|++.+|..|++||+.++.. . . ++++.++++..++.+. .... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE-----------VKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH-----------HhccCCcccCCHHH
Confidence 67889999999999998899999987531 1 1 1233444444433322 2223 57899999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHH
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~e 530 (747)
|||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999999998865589999999999876 499999999999999998776
Q ss_pred H
Q 004513 531 L 531 (747)
Q Consensus 531 L 531 (747)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
No 71
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-45 Score=380.27 Aligned_cols=218 Identities=45% Similarity=0.742 Sum_probs=195.9
Q ss_pred CcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhh
Q 004513 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384 (747)
Q Consensus 305 ~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr 384 (747)
..+.|+++|++++|+++.+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35679999999999643234699999999999999999999999999999999999999999999999998877777788
Q ss_pred cceEEEeccCccccccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 385 SQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
+.++|++|++.+|..|++||+.++. .....++.+..+...+.+++..++.|+++.+.....+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999865 333444555555566788899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceE
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~i 522 (747)
+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999988999999999975
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-45 Score=382.09 Aligned_cols=214 Identities=34% Similarity=0.565 Sum_probs=191.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecC-CCCHHHhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK-NLKLEWLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~-~~~~~~lr~~ 386 (747)
.++++|++|+|+.+ .++|+++||+|++|+.++|+|+||||||||+++|.|+++|++|.|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999754 68999999999999999999999999999999999999999999999999998 4788899999
Q ss_pred eEEEeccC--ccccccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 387 IGLVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 387 i~~v~Q~~--~lf~~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
||||+|+| .+|..||.|.++||. ..+.+ ++.++++.+++.++ ......+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-----------~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL-----------LDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-----------ccCCccccCCcceeeHHh
Confidence 99999999 689999999999985 34444 45566666665544 334556799999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|.+|+.+|+|||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999998864 4799999999999877 999999999999999999998765
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=389.53 Aligned_cols=217 Identities=27% Similarity=0.436 Sum_probs=187.1
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++||+++|++....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642224699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEeccCc--cccccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 388 GLVTQEPA--LLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 388 ~~v~Q~~~--lf~~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+||+|+|. ++..||+|||.|+. ..+. +++.++++.+++.+ .......+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-----------FKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHHHHHHHH
Confidence 99999984 55789999999874 2233 23444555544433 33445578999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcc
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999999988753 79999999999998889999999999999999999887653
No 74
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-45 Score=377.88 Aligned_cols=209 Identities=27% Similarity=0.471 Sum_probs=182.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++|+|.+ . ++|+||||+|++|+++||+||||||||||+|+|+|+++|.+|+|.++|.+...... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 5899999999953 2 69999999999999999999999999999999999999999999999987765542 4589
Q ss_pred EEEeccC---ccccccHHHHHhcCCC-----------CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 388 GLVTQEP---ALLSLSIRDNIAYGRD-----------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 388 ~~v~Q~~---~lf~~TireNi~~g~~-----------~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
|||||.. |-|+.||+|-+.+|+. .+.+++.++++.+++.++.. ..-..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHH
Confidence 9999965 5688999999998752 12478889999988765532 233469999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
|+.|||||+++|++|+|||||+|+|+.++..|.+.|+++.+ |+|+++|||+++.+.. +|+|+.| +++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999988854 8999999999998865 9999999 5578899999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
No 75
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.8e-45 Score=372.23 Aligned_cols=205 Identities=32% Similarity=0.479 Sum_probs=172.3
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH---h-
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L- 383 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~---l- 383 (747)
++++||++.|.... ..++|+++||+|++||++||+||||||||||+++|.|+..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 247899999999999999999999999999999999999999999999999999888543 3
Q ss_pred hcceEEEeccCcccc-ccHHHHHhcC----CCCC---HHHHHHHHHHHHHHHHHHhcccccccccc-CCCCCCCHHHHHH
Q 004513 384 RSQIGLVTQEPALLS-LSIRDNIAYG----RDAT---LDQIEEAAKIAHAHTFISSLEKGYETQVG-RAGLALTEEQKIK 454 (747)
Q Consensus 384 r~~i~~v~Q~~~lf~-~TireNi~~g----~~~~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vg-e~g~~LSGGQkQR 454 (747)
|++||||+|+..|.+ .|++|||.+. .... .+++.+.++..+ +..... ....+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lg-----------l~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLG-----------LEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcC-----------ChhhhccCCchhcCHHHHHH
Confidence 567999999999985 8999999853 2111 223333444433 332222 4567899999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCceEeE
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G~ive 524 (747)
|||||||+.+|+|++.||||++||.++.+.|.+.+++.. .++|+|+|||+...+..|||++.|++|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998884 4789999999999999999999999999543
No 76
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=381.24 Aligned_cols=217 Identities=28% Similarity=0.423 Sum_probs=187.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC---CCCceEEECCeecCCCCHHHhh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWLR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~---p~~G~I~i~G~~i~~~~~~~lr 384 (747)
.|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478999999995 3469999999999999999999999999999999999985 6999999999999888777888
Q ss_pred cceEEEeccCccccccHHHHHhcCCC---C------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 385 SQIGLVTQEPALLSLSIRDNIAYGRD---A------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~~TireNi~~g~~---~------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
+.|+|++|++.+|..|++||+.++.. . .++++.++++.+++.+++. +...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHH
Confidence 89999999999999999999987531 1 1123344455544433322 234567789999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+||||++++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999988877899999999999886 5999999999999999999998753
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-45 Score=388.33 Aligned_cols=215 Identities=30% Similarity=0.497 Sum_probs=184.3
Q ss_pred EEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC--HHHhh
Q 004513 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEWLR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~--~~~lr 384 (747)
|+++||+|+|+... ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996321 146999999999999999999999999999999999999999999999999997754 35678
Q ss_pred cceEEEeccC--ccccccHHHHHhcCC---CCCHHHH----HHHHHHHHHHHHHHhcccccc--ccccCCCCCCCHHHHH
Q 004513 385 SQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYE--TQVGRAGLALTEEQKI 453 (747)
Q Consensus 385 ~~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~i----~~a~~~~~l~~~i~~lp~G~~--t~vge~g~~LSGGQkQ 453 (747)
++||||+|+| .+|+.|++|||.++. ..+.++. .++++.+ |+. +........|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIV-----------GLDYEDYKDKSPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHc-----------CCCchhhccCCcccCCHHHHH
Confidence 8999999998 578899999999864 2333333 3333333 333 4456677899999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHH
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~e 530 (747)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 789999999999885 599999999999999999999
Q ss_pred Hhhc
Q 004513 531 LLAT 534 (747)
Q Consensus 531 L~~~ 534 (747)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8754
No 78
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-44 Score=367.73 Aligned_cols=203 Identities=33% Similarity=0.524 Sum_probs=181.4
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
+.|+++|++++|+.. ..++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999632 2469999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 387 i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
|+||+|++.+|++|++||+.+....+.+++.++++ ++.+...|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998765444444333332 345778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecCh
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~ 528 (747)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999988778999999999999888999999999999998863
No 79
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=7.6e-45 Score=376.80 Aligned_cols=220 Identities=30% Similarity=0.475 Sum_probs=184.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh-hcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l-r~~i 387 (747)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46899999995 3469999999999999999999999999999999999999999999999999988776544 5679
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC-CCHHHH-------HHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD-ATLDQI-------EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~-~~~~~i-------~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+|++|++.+|. .|++|||.++.. .....+ ........+.+.++.+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 99999999987 599999987641 110000 0000111223444444 666666778889999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
||++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998775 67899999999999865 99999999999999999998764
No 80
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-45 Score=398.34 Aligned_cols=213 Identities=25% Similarity=0.410 Sum_probs=184.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3889999999942 35699999999999999999999999999999999999999999999999999887754 4689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
|||+|++.+|. .||+|||.|+.. .+. +++.++++.+++.++ ......+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL-----------LDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999999995 799999998742 232 234455555554443 34445689999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999987753 789999999998775 59999999999999999999997653
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-45 Score=377.32 Aligned_cols=214 Identities=31% Similarity=0.467 Sum_probs=181.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC---HHHhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~---~~~lr~ 385 (747)
++++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999953 256999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCCCC------------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGRDA------------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~~~------------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
.++|++|++.+|. .|++||+.++... .++. ...+.+.+..+ |+.......+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE------KQRALAALERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHH------HHHHHHHHHHc--CChhhhCCCcccCCHHHH
Confidence 9999999999886 7999999875310 1111 01112223332 444455667889999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~ 529 (747)
||++||||++++|+||||||||++||+.++..+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999999999999999999999999999999999998874 3789999999999987 59999999999999999998
Q ss_pred HHh
Q 004513 530 ELL 532 (747)
Q Consensus 530 eL~ 532 (747)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 864
No 82
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=392.45 Aligned_cols=219 Identities=31% Similarity=0.494 Sum_probs=185.1
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH---hh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~---lr 384 (747)
|+++|++|+|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 357999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
++|+||+|++.+|. .|++||+.++. ..+..+..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999986 79999998763 222322221 112223333 44444556677899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|+++|+||||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988743 7899999999999875 999999999999999999999765
No 83
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=384.48 Aligned_cols=212 Identities=30% Similarity=0.518 Sum_probs=182.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-|+++|++|+|+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999952 34699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEeccC--ccccccHHHHHhcCCC---CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 388 GLVTQEP--ALLSLSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 388 ~~v~Q~~--~lf~~TireNi~~g~~---~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+||+|+| .+|..|++||+.|+.. .+. +++.++++.+++.+.. ......||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR-----------DKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCChhhCCHHHHHHHHHH
Confidence 9999998 5788999999998641 222 2344455555444333 334457999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHh
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998774 4789999999999985 59999999999999999987543
No 84
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.3e-44 Score=379.02 Aligned_cols=240 Identities=24% Similarity=0.396 Sum_probs=205.0
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC
Q 004513 282 YRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (747)
Q Consensus 282 ~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~ 361 (747)
+.+.+.+..+.+.. .....+...+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|++
T Consensus 15 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 15 EGFGELLEKAKQEN--NDRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHHhcccccc--cccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555555543322 222233445679999999852 35999999999999999999999999999999999999
Q ss_pred CCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcccccccccc
Q 004513 362 DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441 (747)
Q Consensus 362 ~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vg 441 (747)
+|++|+|.++| .|+|++|++.+|+.|++||+.++......++.++++.+++.+.+..+|.++++.++
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~ 154 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceec
Confidence 99999999999 59999999999999999999987544455667778888888899999999999999
Q ss_pred CCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEeeCcchhhcCCEEEEEeCc
Q 004513 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (747)
Q Consensus 442 e~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~-i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G 520 (747)
+.+..||||||||++|||||+++|++|||||||++||+.++..+.+. ++.+..++|+|++||+++.+..||+|++|++|
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999988774 45666689999999999999889999999999
Q ss_pred eEeEecChHHHhhcchHHHHH
Q 004513 521 RLFEMGTHDELLATGDLYAEL 541 (747)
Q Consensus 521 ~ive~Gt~~eL~~~~~~~~~l 541 (747)
++++.|+++++.+....|...
T Consensus 235 ~i~~~g~~~~~~~~~~~~~~~ 255 (282)
T cd03291 235 SSYFYGTFSELQSLRPDFSSK 255 (282)
T ss_pred EEEEECCHHHHHhcchHHHHH
Confidence 999999999998755555433
No 85
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=378.48 Aligned_cols=217 Identities=28% Similarity=0.424 Sum_probs=183.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. ...
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 599999999995 24699999999999999999999999999999999999997 48999999998853 344
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC----CC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~----~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.|+||+|++.+|..|++|||.++.. .+ ++++.++++.+++.+.+ ++.+ .....+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKL----NTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHH----hCCcccCCHHHH
Confidence 567889999999999999999999987641 12 22334444444432222 2223 345678999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999999854 999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
.+.
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 754
No 86
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.6e-44 Score=370.87 Aligned_cols=216 Identities=28% Similarity=0.425 Sum_probs=179.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh-hcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l-r~~i 387 (747)
|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.... |+.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 57899999995 3469999999999999999999999999999999999999999999999999988776544 6779
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~-~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
+|++|++.+|. .|++||+.++.. ....+..+.+ .+.++.++ +++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999997 599999988642 2111111111 11112111 1233345567789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 466 SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998775 57899999999998765 99999999999999999887753
No 87
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=383.57 Aligned_cols=221 Identities=29% Similarity=0.481 Sum_probs=186.9
Q ss_pred cEEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC----CHH
Q 004513 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~----~~~ 381 (747)
.|+++||+|+|+... ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996322 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HhhcceEEEeccC--ccccccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHHHHHH
Q 004513 382 WLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKL 455 (747)
Q Consensus 382 ~lr~~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQkQRi 455 (747)
.+|+.||||+|+| .+|..|++|||.|+. ..+.++..+.+ .+.+..+ |+++ .....+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6888999999998 588889999999864 23433333221 2233333 6663 45667889999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
+|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 4799999999999875 59999999999999999999987
Q ss_pred hcc
Q 004513 533 ATG 535 (747)
Q Consensus 533 ~~~ 535 (747)
+..
T Consensus 235 ~~~ 237 (286)
T PRK13646 235 KDK 237 (286)
T ss_pred hCH
Confidence 653
No 88
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=378.71 Aligned_cols=217 Identities=29% Similarity=0.490 Sum_probs=184.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 489999999995 2469999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCC---CC-C----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~-~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.|+|++|++.+|..|++||+.++. .. . ++++.++++.+++.+.+ .+..+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 56788999999999999899999998753 11 1 22344444444433222 2344667789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++.+|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877889999999999885 5999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 754
No 89
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.1e-44 Score=376.45 Aligned_cols=216 Identities=31% Similarity=0.489 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC-----CceEEECCeecCCC--CHH
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKNL--KLE 381 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~-----~G~I~i~G~~i~~~--~~~ 381 (747)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999952 46999999999999999999999999999999999999998 99999999998753 355
Q ss_pred HhhcceEEEeccCccccccHHHHHhcCCC----CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~TireNi~~g~~----~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
.+|+.|+|++|++.+|..|++||+.++.. .+.+ ++.++++..++.+++ .........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHH
Confidence 67889999999999999999999987531 1222 233333333332111 03445667899999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHh
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999886 49999999999999999999986
Q ss_pred hc
Q 004513 533 AT 534 (747)
Q Consensus 533 ~~ 534 (747)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 53
No 90
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-44 Score=376.52 Aligned_cols=220 Identities=26% Similarity=0.403 Sum_probs=179.9
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH---HHhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~---~~lr~ 385 (747)
|+++||+++|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999951 3569999999999999999999999999999999999999999999999999877653 34678
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCCCCCH---HHHH---HHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGRDATL---DQIE---EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~~~~~---~~i~---~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
.++||+|++.+|. .|++||+.++..... ..+. .......+.+.++.+ |+.........+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999999885 799999987531100 0000 000011112223332 444455667789999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHh
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999998874 3789999999999985 59999999999999999998863
No 91
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-45 Score=365.16 Aligned_cols=213 Identities=30% Similarity=0.453 Sum_probs=186.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC---HHHhh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~---~~~lr 384 (747)
.|+++||++.||+ ++.+|+||||+|++||++|||||||||||||+++|.|+.+|++|+|.++|.++..+. ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999973 568999999999999999999999999999999999999999999999999998887 55678
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCC-C-----------CCHHHH---HHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGR-D-----------ATLDQI---EEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~-~-----------~~~~~i---~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
++||+++|++.|-+ .||.+|++.|+ . .++++- .++++.+ |+....-.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv-----------gi~~~A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV-----------GILDKAYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc-----------CcHHHHHHHhccCC
Confidence 99999999999985 89999999876 2 223332 2333333 33334456778999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEe
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~ 525 (747)
|||+|||+|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|+|+.-|.+++++. ||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998774 57899999999999975 999999999999999
Q ss_pred cChHHHhh
Q 004513 526 GTHDELLA 533 (747)
Q Consensus 526 Gt~~eL~~ 533 (747)
|+.+|+-.
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999643
No 92
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-44 Score=366.02 Aligned_cols=200 Identities=32% Similarity=0.468 Sum_probs=182.2
Q ss_pred EEEEeEEEEecCCCC--CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 309 IEFRNVYFSYLSRPE--IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 309 I~~~~v~f~y~~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
|+++||+++|++..+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999964211 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 387 i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
|+|++|+|.+|+.|++||+.++...+++++.++++.+++.+++..+|.|++|.+++++.+||||||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999976555667778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHh-cCCCeEEEEeeCcchhhcCCEEEEEeCce
Q 004513 467 ILLLDEVTGGLDFEAERAVQE-ALDLL-MLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~-~i~~~-~~~~t~I~itH~l~~i~~aD~I~vl~~G~ 521 (747)
++||||||++||+++.+.+.+ .++.. .+++|+|++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888876 56655 34689999999999988899999999985
No 93
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=373.47 Aligned_cols=213 Identities=31% Similarity=0.503 Sum_probs=184.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++|+|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 488999999995 34699999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEeccCccccccHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHHHHhccccc
Q 004513 388 GLVTQEPALLSLSIRDNIAYGRDA---TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 388 ~~v~Q~~~lf~~TireNi~~g~~~---~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRialARAll~ 463 (747)
+|++|++.+|..|++||+.++... ..+++.++++.. |++ .........||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV-----------GLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHc-----------CCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999876421 122333333333 332 23345677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998874 37999999999999865 999999999999999999998764
No 94
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=395.66 Aligned_cols=211 Identities=24% Similarity=0.456 Sum_probs=183.1
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 589999999995 35689999999999999999999999999999999999999999999999999877653 5689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+||+|++.+|. .||+|||.|+.. .+++ ++.++++..++ ..........||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl-----------~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL-----------AGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 799999998742 2332 33444444433 33334556789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988754 789999999999875 5999999999999999999999765
No 95
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=365.91 Aligned_cols=222 Identities=27% Similarity=0.445 Sum_probs=185.5
Q ss_pred cEEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC-CHHHhhc
Q 004513 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-KLEWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~-~~~~lr~ 385 (747)
.++++|+++.|+... ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999996421 11599999999999999999999999999999999999999999999999776554 3346788
Q ss_pred ceEEEeccCcc-cc--ccHHHHHhcCC-----CCCHHHHHHHHHHHHHHH-HHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 386 QIGLVTQEPAL-LS--LSIRDNIAYGR-----DATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 386 ~i~~v~Q~~~l-f~--~TireNi~~g~-----~~~~~~i~~a~~~~~l~~-~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
.|-+|+|||.- ++ -||++-|.=.- +...+++.++++.+++.+ +.. .+...||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~-----------R~P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD-----------RRPHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh-----------cCchhcChhHHHHHH
Confidence 89999999972 32 68877765321 233556788888887643 333 345569999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR--STIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~--t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
|||||.-+|++||||||||+||+..+..|++.+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998876554 99999999999987 99999999999999999999987
Q ss_pred c-chHHHH
Q 004513 534 T-GDLYAE 540 (747)
Q Consensus 534 ~-~~~~~~ 540 (747)
. ...|.+
T Consensus 232 ~~~h~ytr 239 (252)
T COG1124 232 HPSHPYTR 239 (252)
T ss_pred CCccHHHH
Confidence 6 334543
No 96
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=378.55 Aligned_cols=220 Identities=30% Similarity=0.520 Sum_probs=187.1
Q ss_pred CcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--
Q 004513 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN-- 377 (747)
Q Consensus 305 ~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~-- 377 (747)
..+.|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 10 ~~~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 345699999999995 2469999999999999999999999999999999999996 589999999999853
Q ss_pred CCHHHhhcceEEEeccCccccccHHHHHhcCCC----CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCH
Q 004513 378 LKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (747)
Q Consensus 378 ~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~----~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSG 449 (747)
.+...+|++|+|++|++.+|..|++||+.++.. .+. ++++++++.+++.+. +.....+...+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-------VKDKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-------hHHHHhcCCCCCCH
Confidence 455678889999999999999999999987531 222 234444444443221 23345677889999
Q ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecCh
Q 004513 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 450 GQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~ 528 (747)
|||||++||||++++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998877789999999999886 4999999999999999999
Q ss_pred HHHhhc
Q 004513 529 DELLAT 534 (747)
Q Consensus 529 ~eL~~~ 534 (747)
+++...
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 998754
No 97
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-44 Score=381.93 Aligned_cols=219 Identities=23% Similarity=0.442 Sum_probs=182.7
Q ss_pred EEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC----CCHHH
Q 004513 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEW 382 (747)
Q Consensus 309 I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~----~~~~~ 382 (747)
|+++||+|+|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1359999999999999999999999999999999999999999999999999863 33566
Q ss_pred hhcceEEEeccC--ccccccHHHHHhcCC-C--CCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHHH
Q 004513 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR-D--ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 383 lr~~i~~v~Q~~--~lf~~TireNi~~g~-~--~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRia 456 (747)
+|+.|+||+|+| .+|..|+.||+.|+. . .+.++..+.+ .+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIA-----AEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 888999999998 788899999999874 1 2333322111 1122222 332 2345667899999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|||||+.+|+||||||||++||+.+++.+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998774 4789999999999885 5999999999999999999998764
No 98
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.7e-44 Score=370.22 Aligned_cols=210 Identities=28% Similarity=0.444 Sum_probs=178.5
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++||++.|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999531 257999999999999999999999999999999999999999999999999987643 56778899
Q ss_pred EEeccCccc-cccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
||+|++.+| ..|++||+.+.. .... +++.++++..+ +.........+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG-----------LTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHHhChhhhCCHHHHHHHHHHHH
Confidence 999999998 589999998753 1222 22333333333 3233344456899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988777999999999999865 999999999999999998875
No 99
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=382.55 Aligned_cols=215 Identities=29% Similarity=0.486 Sum_probs=182.5
Q ss_pred EEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC----CCHHH
Q 004513 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEW 382 (747)
Q Consensus 309 I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~----~~~~~ 382 (747)
|+++|++|+|+... ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 1469999999999999999999999999999999999999999999999999863 34556
Q ss_pred hhcceEEEeccC--ccccccHHHHHhcCC---CCCHHHH----HHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHH
Q 004513 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (747)
Q Consensus 383 lr~~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~i----~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQk 452 (747)
+|+.|+||+|+| .+|+.||+|||.|+. ..+.++. .++++.+ |+. .........||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq~ 151 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV-----------GLPEELLARSPFELSGGQM 151 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCChhhhhCCcccCCHHHH
Confidence 788999999998 688899999999874 2333332 2333333 343 223556778999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~ 529 (747)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998874 3789999999999885 59999999999999999999
Q ss_pred HHhhc
Q 004513 530 ELLAT 534 (747)
Q Consensus 530 eL~~~ 534 (747)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98764
No 100
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-44 Score=373.79 Aligned_cols=215 Identities=28% Similarity=0.473 Sum_probs=179.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999953 469999999999999999999999999999999999999999999999999876543 35689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~~-------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+||+|+|.+|. .|++||+.++... +..+..+ .+.+.+..+ |++........+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999999985 7999999876421 1111111 112223332 4444455666789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999999988743 7899999999998754 999999999999999999998654
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-44 Score=381.51 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=186.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 3899999999953 234699999999999999999999999999999999999999999999999999888777788899
Q ss_pred EEEeccC--ccccccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 388 GLVTQEP--ALLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 388 ~~v~Q~~--~lf~~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+|++|++ .++..|++|||.++. ..+. +++.++++.+++.++ +......||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDF-----------LNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHH
Confidence 9999998 456789999998863 1232 234444444444433 3444568999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcch
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~ 536 (747)
|||+.+|+||||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 999999999999999999999999999999988753 789999999999988899999999999999999999876543
No 102
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.4e-44 Score=394.35 Aligned_cols=216 Identities=25% Similarity=0.403 Sum_probs=184.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34689999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
|||+|++.+|. .||+|||.|+.. .+..+..+ .+++.++.+ |++........+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE-----RVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 899999998742 22222211 112223333 45555566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcc
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999987753 789999999999875 59999999999999999999998753
No 103
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.4e-44 Score=385.75 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=181.1
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
..|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 3599999999995 356999999999999999999999999999999999999999999999999997654 357889
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC---CCCHHHHH----HHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLDQIE----EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~----~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
||||||++.+|. .|++||+.|.. ..+..+.. ++++.+ .+++..++. ..+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~----~~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAK----VGELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCc----hhhCCHHHHHHHHHH
Confidence 999999999985 89999998632 12222222 222222 223333444 458999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|||+++|++|||||||+|||+.+++.+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999998875 47899999999999865 999999999999999999998754
No 104
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.4e-44 Score=370.02 Aligned_cols=202 Identities=27% Similarity=0.472 Sum_probs=171.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~lr~ 385 (747)
|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999532 24699999999999999999999999999999999999999999999999998766533 4678
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCC---CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~---~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
+++|++|++.+|. .|++||+.++. ... ++++.++++.+++.+ .......+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-----------KAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHH
Confidence 9999999999886 79999998752 111 233444555544433 3334456899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceE
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~i 522 (747)
||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998774 47899999999999875 999999999985
No 105
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.4e-44 Score=396.38 Aligned_cols=201 Identities=30% Similarity=0.458 Sum_probs=176.6
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh----hcceEEEeccCcccc
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS 398 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l----r~~i~~v~Q~~~lf~ 398 (747)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+ |+.|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3569999999999999999999999999999999999999999999999999999988777 789999999999996
Q ss_pred -ccHHHHHhcCCC---CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEE
Q 004513 399 -LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470 (747)
Q Consensus 399 -~TireNi~~g~~---~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illL 470 (747)
.||+|||.|+.. .+. +++.++++.+ |++...+....+|||||||||+|||||+++|+||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 699999998642 222 2333444443 444555667778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchh-hcCCEEEEEeCceEeEecChHHHhhc
Q 004513 471 DEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 471 DEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i-~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||||||||+.+++.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999988764 379999999999986 45999999999999999999999875
No 106
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-44 Score=371.73 Aligned_cols=218 Identities=31% Similarity=0.487 Sum_probs=181.8
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hhh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~lr 384 (747)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 12799999999999999999999999999999999999999999999999999876543 347
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
+.|+|++|++.+|. .|++||+.++. ..+..+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999996 79999998753 12211111 1122333333 44445556667899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
++++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998874 37899999999999865 99999999999999999888764
No 107
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-44 Score=349.23 Aligned_cols=209 Identities=28% Similarity=0.464 Sum_probs=187.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|.+++|.|+|.. .+ =.++++|++||++||+||||||||||+++|.||..|.+|+|.|||+|.....+. ++-++
T Consensus 2 l~L~~V~~~y~~---~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGH---LP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCc---ce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 567899999952 12 368999999999999999999999999999999999999999999999887764 45799
Q ss_pred EEeccCcccc-ccHHHHHhcCCC-------CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD-------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~-------~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
.++||..||. .||.+||.+|.. .+.++++.++..+++..+...||. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 899999999852 235678899999999999999986 499999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhcc
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
|+|+-+||+||||+|+|||.-+..+...+.++. ++.|+++|||+++.+.. +|+++++++|||+++|+.+++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999999988887664 57899999999998865 9999999999999999999998754
No 108
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-44 Score=367.70 Aligned_cols=202 Identities=33% Similarity=0.539 Sum_probs=171.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999952 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEeccCcccc-ccHHHHHhcCCC---CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD---ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~---~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
||+|++.+|. .|++||+.++.. ...+ ++.++++.+ |++........+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV-----------GLEGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999885 799999987531 1222 233333333 44444555567899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
|+++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998874 37899999999998765 9999999999998765
No 109
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.2e-44 Score=368.94 Aligned_cols=207 Identities=30% Similarity=0.461 Sum_probs=172.4
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH----Hh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE----WL 383 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~----~l 383 (747)
|+++||+++|++.. ..++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999995311 14799999999999999999999999999999999999999999999999999876643 24
Q ss_pred hcceEEEeccCcccc-ccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 384 RSQIGLVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 384 r~~i~~v~Q~~~lf~-~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+++++|++|++.+|. .|++||+.++.. ....+.. ..+.+.+..+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 578999999999987 599999988642 1111111 1122333333 5555556677899999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeCceE
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRL 522 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~G~i 522 (747)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999988754 7899999999998888999999999975
No 110
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-44 Score=380.77 Aligned_cols=215 Identities=27% Similarity=0.484 Sum_probs=184.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecC--CCCHHHhhc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~--~~~~~~lr~ 385 (747)
-|+++|++++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999952 356999999999999999999999999999999999999999999999999984 344567888
Q ss_pred ceEEEeccC--ccccccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 386 QIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 386 ~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
.|+|++|++ .+|+.|++||+.++. ..+.++ +.++++.+ |+.........+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT-----------GIEHLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhhhhCCcccCCHHHHHHHH
Confidence 999999998 577899999998753 223322 33333433 3333445667899999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
|||||+.+|+||||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988753 799999999999986 599999999999999999999876
Q ss_pred cc
Q 004513 534 TG 535 (747)
Q Consensus 534 ~~ 535 (747)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 43
No 111
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-44 Score=373.54 Aligned_cols=217 Identities=30% Similarity=0.511 Sum_probs=183.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++||+++|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999631 46999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEeccCcccc-ccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccc--cccCCCCCCCHHHHHHHHHhcccc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYET--QVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t--~vge~g~~LSGGQkQRialARAll 462 (747)
|++|++.+|. .|++||+.++.. .+.++.. ..+.+.+..+ |+.. .....+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999995 799999987531 1211111 1122333333 3432 456677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998875 3789999999999875 5999999999999999999988653
No 112
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.4e-44 Score=370.35 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=183.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 68999999995 346999999999999999999999999999999999999999999999999998766543 45899
Q ss_pred EEeccCccc-cccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALL-SLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|++|++.+| ..|++||+.++.. .+..+..+ .+.+.+..+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 6899999987531 22222111 122334433 566666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhc
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|+||||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 47899999999999888999999999999999999988764
No 113
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-44 Score=369.22 Aligned_cols=213 Identities=25% Similarity=0.418 Sum_probs=177.8
Q ss_pred cEEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH---h
Q 004513 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~---l 383 (747)
-++++||+|+|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996322 146999999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-cceEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 384 R-SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 384 r-~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
| +.|+|++|++.+|. .|++||+.++. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 67999999999886 59999998742 222222111 111222222 555555667789999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecC
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt 527 (747)
||++.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 4789999999999999889999999999998775
No 114
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-44 Score=378.66 Aligned_cols=218 Identities=26% Similarity=0.443 Sum_probs=186.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999643334699999999999999999999999999999999999999999999999999877777788999
Q ss_pred EEEeccCc--cccccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 388 GLVTQEPA--LLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 388 ~~v~Q~~~--lf~~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+|++|+|. ++..|+.|||.++. ..+.++ +.++++.+++.+ ........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-----------FKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHHHHHHHH
Confidence 99999984 66789999998753 223333 233444443332 23345678999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcch
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~ 536 (747)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999987753 789999999999998899999999999999999999876543
No 115
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.2e-44 Score=369.62 Aligned_cols=215 Identities=26% Similarity=0.414 Sum_probs=182.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~i 387 (747)
|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 47899999995 346999999999999999999999999999999999999999999999999998776554 35679
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
+|++|++.+|. .|++||+.++.. ...++..+ .+.+.+..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999997 499999987531 12221111 122334443 56666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998775 4789999999998775 499999999999999999988764
No 116
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=9.7e-41 Score=378.14 Aligned_cols=463 Identities=15% Similarity=0.134 Sum_probs=359.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHH------HHHHHHHHHHHHHHHHHH
Q 004513 35 YIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDI------VSQVLSDVLLIQSALSEK 108 (747)
Q Consensus 35 ~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~i------lsrl~~Di~~i~~~l~~~ 108 (747)
.|..++++...+...+.++...+..++-.-|-..+.++.+...-.|+.. ..|.+ =.|+..|+..+.+.....
T Consensus 91 ~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 91 VFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 3444455555566667777777777888888888888888888555544 34322 269999998888777776
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 109 VGNYIHNMATFFSGLAIAF---------------VNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIA 173 (747)
Q Consensus 109 l~~~i~~i~~~i~~li~~~---------------~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (747)
...++.++++++...+++. .+...+..++++.+++-.++..++++.+.+++-+.++..++....+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 7777777766665555443 2222333444444455555556677777888888888888888888
Q ss_pred HHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Q 004513 174 EQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTA 253 (747)
Q Consensus 174 ~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~ 253 (747)
...-++.+.|-.++.|+.+.++.........+...+..........+..+...++.++-+.+++-....|.++.|.++.+
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 99999999999999999999888777777766665555555555555555555555555566666778999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCCCCCC---CCCcccEEEEeEEEEecCCCCC
Q 004513 254 LFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR------SSSTTNYDGNTL---PSVHGNIEFRNVYFSYLSRPEI 324 (747)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~------~~~~~~~~~~~~---~~~~~~I~~~~v~f~y~~~~~~ 324 (747)
..++......+..+...+..++.-++.+.|+.++... +.+.....+... ......|+++|++..-|. +.
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~--~~ 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD--GQ 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC--CC
Confidence 8888888888899999999999999999999988632 111111111000 011467999999999874 34
Q ss_pred CceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHH
Q 004513 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (747)
Q Consensus 325 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireN 404 (747)
..|++++|+|++|+.+-|.||||||||||+++|.|+.|--+|+|..-.. ..+-|+||.|++-.||+||-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHH
Confidence 7899999999999999999999999999999999999999999977620 15899999999999999999
Q ss_pred HhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHH
Q 004513 405 IAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (747)
Q Consensus 405 i~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~ 481 (747)
|+|.+ +.+++++.+++.+|+|.+.+.++.+- ..-..-||+||||||++||.++++|++++|||+|||||+++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 99986 37899999999999999999987442 22456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEE
Q 004513 482 ERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 482 ~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
+..+.+.+++...+.|+|-|.||.......++.+-+
T Consensus 551 e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee
Confidence 999999999999999999999998887766665544
No 117
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=8e-44 Score=395.06 Aligned_cols=213 Identities=25% Similarity=0.433 Sum_probs=187.5
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 388999999995 35799999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEEeccCcc-ccccHHHHHhcCC-CC-------C---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 388 GLVTQEPAL-LSLSIRDNIAYGR-DA-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 388 ~~v~Q~~~l-f~~TireNi~~g~-~~-------~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
|||+|++.+ |+.|++||+.+++ .+ . .++++++++.+++.++ ......+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-----------~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-----------ADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 999999987 5799999999875 11 1 2344555555544333 3345678999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|||||+++|+||||||||++||+.++..+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 5789999999999985 599999999999999999999876
Q ss_pred c
Q 004513 534 T 534 (747)
Q Consensus 534 ~ 534 (747)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 118
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-44 Score=373.33 Aligned_cols=217 Identities=28% Similarity=0.453 Sum_probs=184.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCCCHHH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLEW 382 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~~~~~ 382 (747)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4889999999952 4699999999999999999999999999999999999984 6999999999998888778
Q ss_pred hhcceEEEeccCccc-cccHHHHHhcCCCC-----CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 383 LRSQIGLVTQEPALL-SLSIRDNIAYGRDA-----TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 383 lr~~i~~v~Q~~~lf-~~TireNi~~g~~~-----~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
+|+.|+|++|++.+| ..|++||+.++... .. +++.++++.+++.+.+ +........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 889999999999866 68999999875311 11 2333444444332211 1233455678999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999988877899999999999885 5999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 754
No 119
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-44 Score=351.66 Aligned_cols=206 Identities=27% Similarity=0.451 Sum_probs=185.7
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~lr~ 385 (747)
|+|+||+++|+. +.++|+||||+|++||++-|+||||||||||+++|++..+|+.|+|.++|+|+..+..+ .+|+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 789999999975 36799999999999999999999999999999999999999999999999999888755 4899
Q ss_pred ceEEEeccCccc-cccHHHHHhcCC---CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALL-SLSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf-~~TireNi~~g~---~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
+||+|+||.-|. .-||.||++|.. ... .+++.++++.++|.+....||. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999987 589999999853 223 3567788899999888888886 499999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
|||++.+|++||-||||.+|||.....|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999988874 58999999999999987 68999999999987543
No 120
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.3e-44 Score=393.24 Aligned_cols=213 Identities=23% Similarity=0.401 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCC--ceEEECCeecCCCCHHHhh
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL--GEVLLDGENIKNLKLEWLR 384 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~--G~I~i~G~~i~~~~~~~lr 384 (747)
+.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.++|.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 5699999999995 3469999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
+.|+||+|++.+|. .||+|||.|+. ..+.+ ++.++++.. |++........+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV-----------GLGDAAAHLPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCchhhCChhhCCHHHHHHHH
Confidence 68999999999995 69999999864 22322 233333333 4444455566789999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML---GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~---~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|||||+++|++||||||||+||+..+..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++|+.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987653 689999999999875 59999999999999999999998
Q ss_pred hcc
Q 004513 533 ATG 535 (747)
Q Consensus 533 ~~~ 535 (747)
...
T Consensus 228 ~~p 230 (362)
T TIGR03258 228 DAP 230 (362)
T ss_pred hCc
Confidence 753
No 121
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-44 Score=376.44 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=185.6
Q ss_pred cccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCC--C
Q 004513 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--L 378 (747)
Q Consensus 306 ~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~--~ 378 (747)
.+.|+++||+++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 45799999999995 34699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHhhcceEEEeccCccccccHHHHHhcCCC---C--CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCH
Q 004513 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A--TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (747)
Q Consensus 379 ~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~--~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSG 449 (747)
+...+|+.|+|++|++.+|..|++||+.++.. . .. +++.++++.+++.+.+ .+.....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 45567889999999999998899999987531 1 11 2234444444432221 1234566789999
Q ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecCh
Q 004513 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 450 GQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~ 528 (747)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999865 999999999999999999
Q ss_pred HHHhhc
Q 004513 529 DELLAT 534 (747)
Q Consensus 529 ~eL~~~ 534 (747)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998753
No 122
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.2e-44 Score=390.64 Aligned_cols=211 Identities=27% Similarity=0.445 Sum_probs=181.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 388999999995 3469999999999999999999999999999999999999999999999999987654 35689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC-------CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD-------ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~-------~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
+||+|++.+|. .|++|||.|+.. .+.+ ++.++++.. |+..........||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV-----------QLAHLADRYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHH
Confidence 99999999996 799999998742 1222 233333333 333334456678999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
+|||||+++|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988754 6899999999998765 9999999999999999999998
Q ss_pred hc
Q 004513 533 AT 534 (747)
Q Consensus 533 ~~ 534 (747)
..
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 65
No 123
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.7e-44 Score=364.27 Aligned_cols=198 Identities=29% Similarity=0.476 Sum_probs=169.3
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEE
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~ 389 (747)
+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.|+|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 36899999953 1569999999999999999999999999999999999999999999999998854 456778999
Q ss_pred EeccC--ccccccHHHHHhcCCC-C--CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 390 VTQEP--ALLSLSIRDNIAYGRD-A--TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 390 v~Q~~--~lf~~TireNi~~g~~-~--~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
++|++ .+|..|++||+.++.. . ..+++.++++.+++.++ .......||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL-----------KERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh-----------cCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4678899999988642 1 23455666666654433 3344457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
|++|||||||++||+.+++.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 457899999999999875 9999999999985
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-43 Score=369.60 Aligned_cols=220 Identities=23% Similarity=0.388 Sum_probs=184.7
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~i 387 (747)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 78999999995 246999999999999999999999999999999999999999999999999998776554 35679
Q ss_pred EEEeccCcccc-ccHHHHHhcCCCCCHH---HH---HHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRDATLD---QI---EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~~~~~---~i---~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
+|++|++.+|. .|++||+.++...... .+ ........+.+.+..+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999997 5999999875321100 00 0000111223344443 55556677788999999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999875 99999999999999999998864
No 125
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8.4e-44 Score=392.42 Aligned_cols=212 Identities=28% Similarity=0.475 Sum_probs=183.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.|
T Consensus 14 ~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34689999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+||+|++.+|. .||+|||.|+.. .+.. ++.++++..++.++ ......+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-----------AQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999999995 699999998742 2222 34444555444433 34445689999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988753 789999999999875 59999999999999999999998753
No 126
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-43 Score=363.94 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=187.6
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH----HHhhc
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWLRS 385 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~----~~lr~ 385 (747)
.+.|++|+|+. +.++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 47899999963 3579999999999999999999999999999999999999999999999998876542 24567
Q ss_pred ceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 386 ~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
.++|++|++.+|+.|++|||.++....+++..++++.+++.+.+..+|.|+++.++....+||||||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999987655566677888888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCce
Q 004513 466 SILLLDEVTGGLDFEAERAVQE--ALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGR 521 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~--~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~ 521 (747)
++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.+..||+|++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999998877 555543 4689999999999998899999999884
No 127
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=380.57 Aligned_cols=215 Identities=22% Similarity=0.412 Sum_probs=181.4
Q ss_pred EEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC---------
Q 004513 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--------- 377 (747)
Q Consensus 309 I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~--------- 377 (747)
|+++||+++|+... ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996421 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHhhcceEEEeccC--ccccccHHHHHhcCC---CCCHHHH----HHHHHHHHHHHHHHhcc
Q 004513 378 ---------------LKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLE 433 (747)
Q Consensus 378 ---------------~~~~~lr~~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~i----~~a~~~~~l~~~i~~lp 433 (747)
.....+|+.||||+|+| .+|..||+|||.|+. ..+.+++ .++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~---------- 152 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV---------- 152 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc----------
Confidence 13456788999999986 578899999999874 2333333 2333332
Q ss_pred cccc-ccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-c
Q 004513 434 KGYE-TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-N 510 (747)
Q Consensus 434 ~G~~-t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~ 510 (747)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .
T Consensus 153 -gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 153 -GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 343 23456778999999999999999999999999999999999999999999998774 4899999999999874 5
Q ss_pred CCEEEEEeCceEeEecChHHHhhc
Q 004513 511 ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 511 aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+|++|++|+|++.|+++++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998764
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=376.25 Aligned_cols=217 Identities=27% Similarity=0.485 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC-HHHhhcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~-~~~lr~~i 387 (747)
|+++|++++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999952 346999999999999999999999999999999999999999999999999998765 35678899
Q ss_pred EEEeccCc--cccccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 388 GLVTQEPA--LLSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 388 ~~v~Q~~~--lf~~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
+|++|+|. ++..|++|||.++.. .+..+..+.+ .+.++.+ |++.........||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV-----DRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999986 567899999988641 2322222211 1122222 4444455667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhc
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
.+|+||||||||++||+.++..+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998764 47999999999999988999999999999999999988653
No 129
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=371.45 Aligned_cols=218 Identities=29% Similarity=0.484 Sum_probs=183.5
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCC--CC
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LK 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~--~~ 379 (747)
+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999952 4699999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCCC---C-C----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
...+|+.|+|++|++.+|+.|++||+.++.. . + ++++.++++.+++.+ ++.......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 5567889999999999999999999987631 1 1 122333333333222 22233456678999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
|||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998765 99999999999999999998
Q ss_pred Hhhc
Q 004513 531 LLAT 534 (747)
Q Consensus 531 L~~~ 534 (747)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8653
No 130
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=373.49 Aligned_cols=217 Identities=27% Similarity=0.413 Sum_probs=182.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC--C---CCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--p---~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++|+++.|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 489999999995 3469999999999999999999999999999999999997 3 59999999999864 345
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC----CCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~----~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.|+|++|++.+|..|++||+.++.. ..+++ +.++++..++.+++ .+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHH
Confidence 567889999999999998999999987631 12222 22233333322211 2334567789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|+||||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 4999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 754
No 131
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-44 Score=366.01 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=176.4
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 57899999995 34699999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+|. .|++||+.++. ..+ ++++.++++..++.+ .......+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-----------AADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHHHHHHH
Confidence 9999999886 69999998742 122 123444444444433 2333456899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999987643 7899999999999865 999999999999999988764
No 132
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=372.00 Aligned_cols=217 Identities=29% Similarity=0.415 Sum_probs=182.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecC--CCCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK--NLKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~--~~~~ 380 (747)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4889999999953 4699999999999999999999999999999999999997 4999999999987 4455
Q ss_pred HHhhcceEEEeccCcccc-ccHHHHHhcCC---C--CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHH
Q 004513 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR---D--ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~TireNi~~g~---~--~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGG 450 (747)
..+|++|+|++|++.+|. .|++||+.++. . ...+ ++.++++..++... +.........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-------VKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-------hhhhhccChhhCCHH
Confidence 667889999999999996 59999998753 1 1222 23333333332211 122345667899999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChH
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~ 529 (747)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999765 9999999999999999999
Q ss_pred HHhhc
Q 004513 530 ELLAT 534 (747)
Q Consensus 530 eL~~~ 534 (747)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98754
No 133
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-44 Score=364.31 Aligned_cols=202 Identities=24% Similarity=0.397 Sum_probs=173.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++|+|++ .++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999953 46999999999999 99999999999999999999999999999999999988766 66788999
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+|. .|++||+.+.. ..+. +++.++++.+++.+. ......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHHHHHHH
Confidence 9999999986 59999998642 1222 234444444444332 223446799999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEec
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~G 526 (747)
++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877799999999999986 49999999999998765
No 134
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.1e-44 Score=362.40 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=175.4
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+|+.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 47899999995 34799999999999999999999999999999999999999999999999988754 45678899
Q ss_pred EEeccCccc-cccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
||+|++.+| ..|++||+.++. ..+++++.++++..++.+. .......||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS-----------AKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 589999998753 2344556666666655433 3344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998765 47899999999998865 9999999999998765
No 135
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=374.55 Aligned_cols=221 Identities=25% Similarity=0.406 Sum_probs=187.1
Q ss_pred CCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC-
Q 004513 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN- 377 (747)
Q Consensus 304 ~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~- 377 (747)
.....|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++..
T Consensus 16 ~~~~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 16 EEEIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCCeEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3344699999999995 3579999999999999999999999999999999999997 589999999999864
Q ss_pred -CCHHHhhcceEEEeccCccccccHHHHHhcCCC---C-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 378 -LKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 378 -~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
.+...+|+.|+||+|++.+|..|++|||.++.. . ++ +++.++++.+++.+++ ++..+..+..||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS 165 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLS 165 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCC
Confidence 345567889999999999998999999987531 1 12 2233344444332222 244567788999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecC
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt 527 (747)
||||||++||||++++|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877899999999999885 599999999999999999
Q ss_pred hHHHhhc
Q 004513 528 HDELLAT 534 (747)
Q Consensus 528 ~~eL~~~ 534 (747)
++++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14237 246 TRNIFTN 252 (267)
T ss_pred HHHHhcC
Confidence 9998754
No 136
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=374.22 Aligned_cols=215 Identities=31% Similarity=0.495 Sum_probs=184.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4899999999953 235799999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEeccCc--cccccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 388 GLVTQEPA--LLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 388 ~~v~Q~~~--lf~~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+|++|++. ++..|++|||.++. ..+.++ +.++++.. |++........+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV-----------GMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCCcccCCHHHHHHHHHH
Confidence 99999984 45789999998753 123332 22333333 333344556679999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhc
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 4899999999998888999999999999999999888764
No 137
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=373.97 Aligned_cols=218 Identities=26% Similarity=0.449 Sum_probs=184.9
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--CC
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LK 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~--~~ 379 (747)
..|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 3599999999995 3469999999999999999999999999999999999998 689999999999863 45
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCCC---CC---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
...+|+.|+||+|++.+|..|++||+.++.. .. ++++.++++.+++. .++++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHH
Confidence 6678889999999999998899999997642 11 12333444444332 12334456677899999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeC-----------ce
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDE-----------GR 521 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~-----------G~ 521 (747)
|++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999998877889999999999886 5999999996 67
Q ss_pred EeEecChHHHhhc
Q 004513 522 LFEMGTHDELLAT 534 (747)
Q Consensus 522 ive~Gt~~eL~~~ 534 (747)
+++.|+++++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998753
No 138
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-44 Score=392.17 Aligned_cols=211 Identities=26% Similarity=0.428 Sum_probs=181.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999876653 4679
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+||+|++.+|. .|++|||.|+.. .+.. ++.++++.+ |++........+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~l-----------gL~~~~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL-----------QLAHLLDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 699999998642 2222 333444444 3333445556789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+++|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999987743 789999999999876 4999999999999999999999764
No 139
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=371.59 Aligned_cols=217 Identities=26% Similarity=0.406 Sum_probs=182.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC--C---CCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--p---~~G~I~i~G~~i~~~--~~ 380 (747)
.|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 489999999995 3469999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCC---CC-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.++||+|++.+|+.|++||+.++. .. .. +++.++++.+++.. ++.+..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 56788899999999999999999998753 11 11 22233333333222 122345667789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876799999999999875 5999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 764
No 140
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.8e-44 Score=364.49 Aligned_cols=206 Identities=27% Similarity=0.442 Sum_probs=174.7
Q ss_pred EEEEeEEEEecCCCC-CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
|+++||+++|++... .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999963211 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEeccCcccc-ccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+|++|++.+|. .|++||+.+.. ..+. +++.++++.. |++........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL-----------GMEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHHhhhhhhcCHHHHHHHHHHH
Confidence 99999999997 69999997642 1222 2233333333 4444556677889999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 47899999999998765 9999999999998764
No 141
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-44 Score=378.20 Aligned_cols=211 Identities=28% Similarity=0.427 Sum_probs=177.7
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh----hc
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RS 385 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l----r~ 385 (747)
.++|+++.|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567888884 3568999999999999999999999999999999999999999999999999987765443 46
Q ss_pred ceEEEeccCccc-cccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALL-SLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf-~~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
+++|++|++.+| ..|++||+.++. .... +++.++++.+++.+ .+.....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-----------WEHKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCCcccCCHHHHHHHHH
Confidence 799999999998 479999998753 1122 23344444444433 3344456899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|||++++|+||||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 3789999999999875 4999999999999999999998754
No 142
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-44 Score=371.91 Aligned_cols=211 Identities=27% Similarity=0.484 Sum_probs=181.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCe---ecCCCCHHHhh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE---NIKNLKLEWLR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~---~i~~~~~~~lr 384 (747)
.|+++|+++.|+ ..++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++... -.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~ 76 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RD 76 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hh
Confidence 478899999995 457899999999999999999999999999999999999999999999999 6666433 34
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCCC-----C----CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGRD-----A----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~~-----~----~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
++||+|+|+..||. .||++||+||.. . .+.++.+.++.|+|...-+. ...+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHH
Confidence 57999999999995 999999999962 1 23455666677765544333 356799999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchh-hcCCEEEEEeCceEeEecChHHH
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i-~~aD~I~vl~~G~ive~Gt~~eL 531 (747)
+||||||..+|++||||||++|||++.++.+..-++++. -+.|+++|||+.+++ +.||||+||++|+|.+.|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999988887764 378999999999876 56999999999999999999999
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 226 ~~~ 228 (345)
T COG1118 226 YDH 228 (345)
T ss_pred hcC
Confidence 754
No 143
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.5e-43 Score=368.25 Aligned_cols=216 Identities=25% Similarity=0.467 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC--CHHHhhcc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL--KLEWLRSQ 386 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~--~~~~lr~~ 386 (747)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...+|+.
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 68999999995 34699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAl 461 (747)
++|++|++.+|. .|++||+.++. ..+.++..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999885 79999998753 122222211 112233333 555556667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 462 l~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+++|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998774 47999999999999865 999999999999999999988653
No 144
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=365.79 Aligned_cols=217 Identities=24% Similarity=0.357 Sum_probs=180.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 388999999995 346999999999999999999999999999999999999999999999999998877543 6778
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~-~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
++|++|++.+|. .|++||+.++.. ....+..+.++ +.+..++. +..........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999997 699999988642 22222222111 11122211 11122345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998764 5899999999998765 599999999999999999999875
No 145
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=375.37 Aligned_cols=214 Identities=30% Similarity=0.514 Sum_probs=183.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999952 235999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEeccCc--cccccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 389 LVTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 389 ~v~Q~~~--lf~~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
||+|++. +|..|++||+.++. ..+.+ ++.++++.+++.+ ........||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-----------LRDRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccCCHHHHHHHHHHH
Confidence 9999984 67899999998753 22332 2344444444333 334445689999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 99999999999999999999999999999987753 789999999999985 69999999999999999999997643
No 146
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-43 Score=366.90 Aligned_cols=210 Identities=30% Similarity=0.461 Sum_probs=179.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~i 387 (747)
|+++||++.|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 47899999995 246999999999999999999999999999999999999999999999999998776554 46789
Q ss_pred EEEeccCcccc-ccHHHHHhcCC-CC--CH-HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGR-DA--TL-DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~-~~--~~-~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
+|++|++.+|. .|++||+.++. .. .. +...++++..+ ++.........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999997 59999998764 21 11 11222222221 2333445667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988753 7899999999999875 999999999999999999987
No 147
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=371.60 Aligned_cols=217 Identities=29% Similarity=0.462 Sum_probs=182.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcC---CCC--CCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF---YDP--TLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~---~~p--~~G~I~i~G~~i~~~--~~ 380 (747)
.|+++|+++.|+ +.++|+|+||+|++||++||+||||||||||+++|.|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 488999999995 34699999999999999999999999999999999997 455 589999999998754 34
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC---C-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.|+|++|++.+|..|++||+.++.. . .. +++.++++.+++.+ .+.+.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWD-------EVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc-------chhhhhhCCcccCCHHHH
Confidence 567889999999999998999999987531 1 11 22333333333221 222345677889999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 5999999999999999999999
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 754
No 148
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.2e-43 Score=379.60 Aligned_cols=215 Identities=19% Similarity=0.336 Sum_probs=184.5
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++|++++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.+|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-PKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-hHHHHhceE
Confidence 78999999995 35699999999999999999999999999999999999999999999999998763 456788999
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|+||++.+|. .|++||+.+.. ....++..+. ++..+..+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999999996 59999998643 1222221111 12233333 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|++|||||||+|||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999988778999999999998875 999999999999999999998653
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-43 Score=375.67 Aligned_cols=217 Identities=29% Similarity=0.420 Sum_probs=184.7
Q ss_pred cEEEEeEEEEecCCC---CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC-HHHh
Q 004513 308 NIEFRNVYFSYLSRP---EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWL 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~-~~~l 383 (747)
-|+++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999996321 246999999999999999999999999999999999999999999999999987643 3457
Q ss_pred hcceEEEeccCc--cccccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 384 RSQIGLVTQEPA--LLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 384 r~~i~~v~Q~~~--lf~~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
|+.++||+|+|. +|..|+.||+.|+. ..+. +++.++++.+++.+ .......+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-----------YRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHHHH
Confidence 889999999984 66779999999863 1222 23444455444433 3344557899999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHh
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
++|||||+++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998874 378999999999999889999999999999999999987
Q ss_pred hcc
Q 004513 533 ATG 535 (747)
Q Consensus 533 ~~~ 535 (747)
+..
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
No 150
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-43 Score=378.84 Aligned_cols=213 Identities=30% Similarity=0.483 Sum_probs=186.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.++++|++++|+. +..+|+||||+|++|+++|++||||||||||+++|+|+++|++|+|.++|.++..- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999952 35799999999999999999999999999999999999999999999999998766 66788899
Q ss_pred EEEeccCcccc-ccHHHHHhcCC---CC----CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGR---DA----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~---~~----~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
|||||+|.++. .|++|||.|.. .. .++++.++++..++.+ .-..+...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-----------KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-----------hhCcchhhcCHHHHHHHHHHH
Confidence 99999999885 89999998743 11 2456677777765433 114456789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-G-RSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~-~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+++|++|||||||+||||.++..+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998865 4 699999999999987 999999999999999999997653
No 151
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-44 Score=365.29 Aligned_cols=205 Identities=30% Similarity=0.451 Sum_probs=172.1
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996311 1479999999999999999999999999999999999999999999999998863 35689
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+||+|++.+|. .|++||+.++.. .. .+++.++++.. |++........+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV-----------GLSGFENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CChhhhhCCcccCCHHHHHHHHHHH
Confidence 99999999987 799999987531 11 12233344433 3434444555789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEe--CceEeEecChH
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMD--EGRLFEMGTHD 529 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~--~G~ive~Gt~~ 529 (747)
||+++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+. .||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998763 3789999999999875 599999999 79999988753
No 152
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.7e-43 Score=363.21 Aligned_cols=208 Identities=28% Similarity=0.488 Sum_probs=173.0
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH---hh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~---lr 384 (747)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 246999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -cceEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 385 -SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 385 -~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+.|+||+|++.+|. .|++||+.++. ..+..+..+. +.+.+..+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999985 79999998742 1222211111 11223332 5555556667889999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCceEe
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLF 523 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G~iv 523 (747)
|++++|+||||||||++||+.++..+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998774 378999999999999889999999999986
No 153
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.7e-43 Score=364.48 Aligned_cols=211 Identities=28% Similarity=0.454 Sum_probs=174.4
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH---HHhh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~---~~lr 384 (747)
|+++||+++|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999995321 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEEeccCc--cc-cccHHHHHhcCC-C--C-CHHH-HHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHH
Q 004513 385 SQIGLVTQEPA--LL-SLSIRDNIAYGR-D--A-TLDQ-IEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 385 ~~i~~v~Q~~~--lf-~~TireNi~~g~-~--~-~~~~-i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRi 455 (747)
++++|++|++. ++ ..|++||+.++. . . .+++ ..++. .+.+..+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 589999998642 1 1 1111 11111 1233333 442 455677789999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEec
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~G 526 (747)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988753 789999999999987 59999999999998765
No 154
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=371.13 Aligned_cols=217 Identities=30% Similarity=0.478 Sum_probs=181.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++|++|+|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 489999999995 2469999999999999999999999999999999999997 479999999999854 344
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC---CC-H----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-L----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~~-~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.++|++|++.+|+.|++||+.++.. .. . +++.++++.++++. ...........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 567888999999999999999999987531 11 1 12333333333211 001223556789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888777899999999999765 999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 654
No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-43 Score=373.14 Aligned_cols=220 Identities=26% Similarity=0.464 Sum_probs=183.1
Q ss_pred cEEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC----CHH
Q 004513 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~----~~~ 381 (747)
.|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998754 345
Q ss_pred HhhcceEEEeccC--ccccccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHH
Q 004513 382 WLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 382 ~lr~~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRi 455 (747)
.+|+.|+|++|++ .+|..|++|||.++. ..+.++..+.+ .+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999998 578899999998753 12333322211 1222222 443 234566788999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998774 47899999999998864 99999999999999999998866
Q ss_pred c
Q 004513 534 T 534 (747)
Q Consensus 534 ~ 534 (747)
.
T Consensus 235 ~ 235 (280)
T PRK13649 235 D 235 (280)
T ss_pred C
Confidence 4
No 156
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=373.74 Aligned_cols=212 Identities=27% Similarity=0.417 Sum_probs=182.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 489999999995 34699999999999999999999999999999999999999999999999999888878888899
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC-C----------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD-A----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~-~----------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
+|++|++.++. .|++||+.++.. . .++++.++++.+++.+ .......+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-----------LAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccCCHHHHHHH
Confidence 99999987765 699999987531 0 1223444555544433 23334457999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
+||||++.+|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999998874 3789999999999986 59999999999999999999886
Q ss_pred h
Q 004513 533 A 533 (747)
Q Consensus 533 ~ 533 (747)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
No 157
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=370.71 Aligned_cols=211 Identities=24% Similarity=0.396 Sum_probs=182.4
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999995 346999999999999999999999999999999999999999999999999998887777888899
Q ss_pred EEeccCcccc-ccHHHHHhcCC-CC-------C---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR-DA-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~-~~-------~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
|++|++.+|. .|++||+.++. .. . ++++.++++.++ ++.........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR-----------INHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcC-----------CHHHHcCCcccCCHHHHHHHH
Confidence 9999999886 49999998863 11 1 122333343333 333344566789999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998764 4789999999999986 599999999999999999998865
No 158
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=375.96 Aligned_cols=215 Identities=25% Similarity=0.431 Sum_probs=185.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCC---ceEEECCeecCCCCHHHhh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---GEVLLDGENIKNLKLEWLR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~---G~I~i~G~~i~~~~~~~lr 384 (747)
.|+++|++|+|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999632 3469999999999999999999999999999999999999998 8999999999877777788
Q ss_pred cceEEEeccCc--cccccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 385 SQIGLVTQEPA--LLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 385 ~~i~~v~Q~~~--lf~~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
++||||+|++. +++.|++|||.|+. ..+.++ +.++++.+++. ........+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-----------DYIDSEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-----------hHhcCCcccCCHHHHHHH
Confidence 89999999984 56799999998763 223332 34444444443 334455578999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999998899999999999999999998865
Q ss_pred c
Q 004513 534 T 534 (747)
Q Consensus 534 ~ 534 (747)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 159
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=373.30 Aligned_cols=217 Identities=27% Similarity=0.413 Sum_probs=181.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 589999999995 3469999999999999999999999999999999999875 799999999999865 334
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC-C---CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD-A---TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~-~---~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.|+|++|++.+|.+|++||+.++.. . .. +.+.++++.+++. .++.........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 567889999999999998999999987531 1 11 1222333333221 1112334567789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876789999999999875 5999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 754
No 160
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.6e-43 Score=366.70 Aligned_cols=216 Identities=27% Similarity=0.449 Sum_probs=182.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC--------H
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--------L 380 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~--------~ 380 (747)
++++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 88999999995 346999999999999999999999999999999999999999999999999986532 3
Q ss_pred HHhhcceEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
..+|+.++||+|++.+|. .|++||+.++. ....++..+. +.+.++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456788999999999885 79999998742 1122221111 12233333 555555667789999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998775 47899999999999865 99999999999999999999865
Q ss_pred c
Q 004513 534 T 534 (747)
Q Consensus 534 ~ 534 (747)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 4
No 161
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=366.54 Aligned_cols=216 Identities=25% Similarity=0.383 Sum_probs=183.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
.|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 378999999995 346999999999999999999999999999999999999999999999999998776543 5778
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~----~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAl 461 (747)
|+|++|++.+|. .|++||+.++.. .+.++.+ ..+.+.+..+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999886 699999987531 1222111 1223344444 555566677889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 462 l~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+++|++|||||||++||+.++..+.+.++.+. .++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999988764 4789999999998775 599999999999999999998865
No 162
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2e-43 Score=385.26 Aligned_cols=216 Identities=26% Similarity=0.412 Sum_probs=180.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++||+++|+ +..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.... ...|+.|
T Consensus 41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 499999999995 346999999999999999999999999999999999999999999999999997654 4678899
Q ss_pred EEEeccCccc-cccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 388 GLVTQEPALL-SLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 388 ~~v~Q~~~lf-~~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
||+||++.+| ..|++||+.+.. ..+..+..+.++. +.+. -.|++..+ ....+||||||||++|||||++
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~----~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKAD----ARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhC----CChhhCCHHHHHHHHHHHHHhc
Confidence 9999999987 589999998532 1222222221111 1111 12333333 4446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+|++|||||||+|||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|+..|+++++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 47999999999999865 999999999999999999998753
No 163
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.3e-43 Score=362.03 Aligned_cols=202 Identities=27% Similarity=0.488 Sum_probs=171.7
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999953 4699999999999999999999999999999999999999999999999998765542 46799
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+|. .|++||+.++. ....++ +.++++.. |++........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELL-----------QIEHLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHHHHhCChhhCCHHHHHHHHHHHH
Confidence 9999999985 79999998753 122222 22333333 44444555667899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998874 37899999999998865 9999999999999876
No 164
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.3e-43 Score=363.97 Aligned_cols=208 Identities=22% Similarity=0.364 Sum_probs=179.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|+++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 489999999995 34699999999999999999999999999999999999999999999999999888887788899
Q ss_pred EEEeccCccccccHHHHHhcCCC---C--CHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHHHHhccc
Q 004513 388 GLVTQEPALLSLSIRDNIAYGRD---A--TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIARAV 461 (747)
Q Consensus 388 ~~v~Q~~~lf~~TireNi~~g~~---~--~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRialARAl 461 (747)
+|++|++.+|+.|++||+.++.. . .++++. +.++.+ |+. +.......+||||||||++|||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL---------DDLERF--ALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHH---------HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 99999999998999999987421 1 111222 233333 442 345677889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEe-CceEeEecChH
Q 004513 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMD-EGRLFEMGTHD 529 (747)
Q Consensus 462 l~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~-~G~ive~Gt~~ 529 (747)
+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.++.||+|++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998874 3789999999999998899999994 67778889885
No 165
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=375.06 Aligned_cols=220 Identities=25% Similarity=0.452 Sum_probs=182.8
Q ss_pred cEEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC----CHH
Q 004513 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~----~~~ 381 (747)
.|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 245
Q ss_pred HhhcceEEEeccC--ccccccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHH
Q 004513 382 WLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 382 ~lr~~i~~v~Q~~--~lf~~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRi 455 (747)
..|+.|+|++|+| .+|..|++|||.++. ..+.++..+. +.+.+..+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6778899999998 577889999998753 2222222111 12223332 454 234566789999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998874 4789999999999886 599999999999999999998875
Q ss_pred c
Q 004513 534 T 534 (747)
Q Consensus 534 ~ 534 (747)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
No 166
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-43 Score=375.46 Aligned_cols=222 Identities=26% Similarity=0.434 Sum_probs=181.8
Q ss_pred cccEEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC----C-
Q 004513 306 HGNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----L- 378 (747)
Q Consensus 306 ~~~I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~----~- 378 (747)
.+.|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35699999999996421 1359999999999999999999999999999999999999999999999998852 2
Q ss_pred CHHHhhcceEEEeccC--ccccccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHH
Q 004513 379 KLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (747)
Q Consensus 379 ~~~~lr~~i~~v~Q~~--~lf~~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQk 452 (747)
+...+|+.|+||+|++ .+|..|++|||.++.. ...++..+.+ .+.+..+ |+. ........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 4677899999987641 2222222211 1112221 231 234566789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~ 529 (747)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998774 3789999999999875 59999999999999999999
Q ss_pred HHhhc
Q 004513 530 ELLAT 534 (747)
Q Consensus 530 eL~~~ 534 (747)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88654
No 167
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-43 Score=366.31 Aligned_cols=217 Identities=29% Similarity=0.500 Sum_probs=184.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC-----CceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~-----~G~I~i~G~~i~~--~~~ 380 (747)
.|+++|++|+|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 589999999995 346999999999999999999999999999999999999997 6999999999864 344
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC---C-CHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.++||+|++.+|+.|++||+.++.. . ..++ +.++++..++.+ ++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHH
Confidence 567889999999999998999999987631 1 1122 222333333222 223445677889999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888668999999999999875 899999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 654
No 168
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=370.00 Aligned_cols=217 Identities=28% Similarity=0.458 Sum_probs=182.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~--~~ 380 (747)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 599999999995 34699999999999999999999999999999999999985 799999999998653 23
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
..+|+.++|++|++.+|..|++||+.++. ..+.+ ++.++++.+++.+ ............|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 45678899999999999999999998753 12222 2333333333211 1123345567789999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHh
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999888778999999999998865 9999999999999999999987
Q ss_pred hc
Q 004513 533 AT 534 (747)
Q Consensus 533 ~~ 534 (747)
..
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 53
No 169
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.6e-43 Score=377.46 Aligned_cols=216 Identities=25% Similarity=0.403 Sum_probs=179.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.... ..+|++|
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI 79 (303)
T ss_pred EEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence 489999999995 346999999999999999999999999999999999999999999999999986543 4578899
Q ss_pred EEEeccCcccc-ccHHHHHhcC-C--CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYG-R--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g-~--~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
||++|++.+|. .|++||+.+. . ..+..+..+.++ ..++.+ |+.........+||||||||++|||||++
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 7999999753 2 223332222211 112211 23333344556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 57899999999999865 999999999999999999998653
No 170
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=373.01 Aligned_cols=219 Identities=29% Similarity=0.471 Sum_probs=185.5
Q ss_pred cccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCC--C
Q 004513 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--L 378 (747)
Q Consensus 306 ~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~--~ 378 (747)
.+.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 44699999999995 24699999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHhhcceEEEeccCccccccHHHHHhcCCC---C-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHH
Q 004513 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (747)
Q Consensus 379 ~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGG 450 (747)
+...+|+.++|++|++.+|..|++||+.++.. . .. +++.++++.+++.+. +.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE-------VKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh-------HHHHhhCCcccCCHH
Confidence 45567889999999999998899999987531 1 11 223334443333222 223456778899999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChH
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~ 529 (747)
||||++||||++++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877899999999999876 59999999999999999999
Q ss_pred HHhhc
Q 004513 530 ELLAT 534 (747)
Q Consensus 530 eL~~~ 534 (747)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
No 171
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=368.13 Aligned_cols=221 Identities=24% Similarity=0.411 Sum_probs=184.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh-hcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l-r~~ 386 (747)
.|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 489999999995 3579999999999999999999999999999999999999999999999999988775544 456
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCC-CCH----------HHHHH--HHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRD-ATL----------DQIEE--AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~-~~~----------~~i~~--a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
++|++|++.+|. .|++|||.++.. ... ..+.. ......+.+.++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 999999999997 599999998631 000 00000 00011223344444 666667788889999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~ 529 (747)
||++||||++.+|++|||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999987743 7899999999999865 9999999999999999999
Q ss_pred HHhh
Q 004513 530 ELLA 533 (747)
Q Consensus 530 eL~~ 533 (747)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8865
No 172
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.5e-43 Score=383.42 Aligned_cols=226 Identities=25% Similarity=0.398 Sum_probs=185.4
Q ss_pred cEEEEeEEEEecCCC----------CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC
Q 004513 308 NIEFRNVYFSYLSRP----------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~----------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~ 377 (747)
-|+++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HhhcceEEEeccC--ccc-cccHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCC
Q 004513 378 LKLE---WLRSQIGLVTQEP--ALL-SLSIRDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGL 445 (747)
Q Consensus 378 ~~~~---~lr~~i~~v~Q~~--~lf-~~TireNi~~g~-----~~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~ 445 (747)
++.+ .+|++|+||+|+| .|| ..||.|||.++. ..+.++..+.++ +.++.+ |++ ........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~-----~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK-----AMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHc--CCChHHhcCCcc
Confidence 8754 3678899999998 477 489999997532 234333322211 112221 221 23455677
Q ss_pred CCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceE
Q 004513 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (747)
Q Consensus 446 ~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~i 522 (747)
+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||.+|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988753 7899999999999975 999999999999
Q ss_pred eEecChHHHhhcc-hHHHH
Q 004513 523 FEMGTHDELLATG-DLYAE 540 (747)
Q Consensus 523 ve~Gt~~eL~~~~-~~~~~ 540 (747)
++.|+.+++.+.. ..|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998653 34543
No 173
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-43 Score=370.00 Aligned_cols=217 Identities=26% Similarity=0.436 Sum_probs=185.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 489999999995 2469999999999999999999999999999999999986 489999999998853 345
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC---CC---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
..+|++|+|++|++.+|+.|++||+.++.. .. ++++.++++.+++.+++. ......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 677889999999999998899999987642 11 223444555555543332 23456678999999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEe---------CceEeE
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD---------EGRLFE 524 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~---------~G~ive 524 (747)
++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998765 99999998 899999
Q ss_pred ecChHHHhhc
Q 004513 525 MGTHDELLAT 534 (747)
Q Consensus 525 ~Gt~~eL~~~ 534 (747)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999764
No 174
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.9e-43 Score=372.73 Aligned_cols=217 Identities=23% Similarity=0.377 Sum_probs=181.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hhh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~lr 384 (747)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 489999999995 34699999999999999999999999999999999999999999999999998776543 357
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+.|+|++|++.+|. .|++||+.++. ..+..+..+ .+.+.+..+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 78999999999997 59999998642 112221111 111122222 3433444556789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999988743 7899999999998865 999999999999999999998764
No 175
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.3e-43 Score=368.49 Aligned_cols=216 Identities=27% Similarity=0.471 Sum_probs=181.9
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC---------
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--------- 379 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~--------- 379 (747)
|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 57899999995 346999999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHhhcceEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHH
Q 004513 380 ----LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (747)
Q Consensus 380 ----~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGG 450 (747)
...+|+.++|++|++.+|. .|++||+.++. ....++..+ .+.+.++.+ |++.........||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356889999999999885 89999998752 112221111 122333333 4555556677889999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecC
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt 527 (747)
||||++|||||+++|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999985 599999999999999999
Q ss_pred hHHHhhc
Q 004513 528 HDELLAT 534 (747)
Q Consensus 528 ~~eL~~~ 534 (747)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T TIGR03005 231 PDEIFRQ 237 (252)
T ss_pred HHHHhcC
Confidence 9998754
No 176
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.8e-43 Score=369.22 Aligned_cols=218 Identities=24% Similarity=0.466 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC--------
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-------- 378 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~-------- 378 (747)
+.|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4699999999995 34699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHhhcceEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccc-cCCCCCC
Q 004513 379 -----KLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQV-GRAGLAL 447 (747)
Q Consensus 379 -----~~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~v-ge~g~~L 447 (747)
....+|+.++||+|++.+|. .|++||+.++. .....+..+ .+.+.++.+ |+.... ......|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccC
Confidence 13466789999999999996 69999998642 122221111 111223322 444332 5567899
Q ss_pred CHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEe
Q 004513 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525 (747)
Q Consensus 448 SGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~ 525 (747)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 48999999999999885 999999999999999
Q ss_pred cChHHHhhc
Q 004513 526 GTHDELLAT 534 (747)
Q Consensus 526 Gt~~eL~~~ 534 (747)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998653
No 177
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.3e-43 Score=369.94 Aligned_cols=223 Identities=25% Similarity=0.421 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCC------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH-
Q 004513 309 IEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE- 381 (747)
Q Consensus 309 I~~~~v~f~y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~- 381 (747)
|+++||+|+|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999531 135799999999999999999999999999999999999999999999999999877654
Q ss_pred --HhhcceEEEeccCc--cc-cccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHH
Q 004513 382 --WLRSQIGLVTQEPA--LL-SLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQ 451 (747)
Q Consensus 382 --~lr~~i~~v~Q~~~--lf-~~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQ 451 (747)
.+|+.|+||+|++. ++ ..|++|||.++. ....++.. ..+.+.++.+ |++ ......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 36778999999983 44 479999997542 11111111 1122233333 443 34466778999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecCh
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~ 528 (747)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 789999999999987 4999999999999999999
Q ss_pred HHHhhcchHH
Q 004513 529 DELLATGDLY 538 (747)
Q Consensus 529 ~eL~~~~~~~ 538 (747)
+++......|
T Consensus 236 ~~~~~~~~~~ 245 (265)
T TIGR02769 236 AQLLSFKHPA 245 (265)
T ss_pred HHHcCCCCHH
Confidence 9998743433
No 178
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-43 Score=370.68 Aligned_cols=216 Identities=31% Similarity=0.448 Sum_probs=184.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999632 24689999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEeccCc-cc-cccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 388 GLVTQEPA-LL-SLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 388 ~~v~Q~~~-lf-~~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+|++|+|. +| ..|+++|+.++. ....++ +.++++..+ +.........+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVD-----------MLERADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCCcccCCHHHHHHHHHH
Confidence 99999985 44 678999998863 122222 223333332 22233455678999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcc
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999999988743 78999999999998889999999999999999999987643
No 179
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-43 Score=367.48 Aligned_cols=211 Identities=27% Similarity=0.395 Sum_probs=182.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 78999999995 346999999999999999999999999999999999999999999999999998887777788999
Q ss_pred EEeccCcc-ccccHHHHHhcCCC-C--C----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPAL-LSLSIRDNIAYGRD-A--T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~l-f~~TireNi~~g~~-~--~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+ +..|++||+.++.. . . ++++.++++.. |++.........||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHH
Confidence 99999988 57899999987631 1 1 12233334433 33334455667899999999999999
Q ss_pred cc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 461 VL------LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 461 ll------~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
|+ .+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 5999999999999999999988
Q ss_pred hh
Q 004513 532 LA 533 (747)
Q Consensus 532 ~~ 533 (747)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 65
No 180
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=367.24 Aligned_cols=216 Identities=27% Similarity=0.461 Sum_probs=183.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecC-CCCHH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK-NLKLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~-~~~~~ 381 (747)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 488999999995 35699999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HhhcceEEEeccCccccccHHHHHhcCCC---CC-HH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-LD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~~-~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
.+|+.++|++|++.+|..|++||+.++.. .. ++ ++.++++..++.+ ++.+.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence 78889999999999999999999987631 11 11 2223333333322 2223455667899999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHh
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999875 9999999999999999998876
Q ss_pred h
Q 004513 533 A 533 (747)
Q Consensus 533 ~ 533 (747)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 4
No 181
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=368.14 Aligned_cols=217 Identities=28% Similarity=0.464 Sum_probs=183.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~--~~ 380 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 388999999995 34699999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC----CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~----~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.++|++|++.+|..|++||+.++.. ..++ ++.++++..++.+.+ ++.......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 456788999999999999999999987531 1122 233334433332222 2334667789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999988877899999999999765 5999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 754
No 182
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-43 Score=367.83 Aligned_cols=217 Identities=28% Similarity=0.452 Sum_probs=184.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~--~~ 380 (747)
.|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 489999999995 34699999999999999999999999999999999999763 489999999999765 44
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC---C-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
...|+.|+|++|++.+|+.|++||+.++.. . .. +++.++++.+++ .+++.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL-------WDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcC-------chhhHHHhhcChhhCCHHHH
Confidence 567888999999999998999999998631 1 11 122333333332 22333456777889999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999988877799999999999986 5999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 654
No 183
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.9e-43 Score=360.24 Aligned_cols=200 Identities=37% Similarity=0.627 Sum_probs=170.1
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEE
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~ 389 (747)
+++|++++|++. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999531 2469999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EeccCc--cccccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 390 VTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 390 v~Q~~~--lf~~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
++|++. ++..|++||+.++. ..+.. ++.++++.. |++.........||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELV-----------GLEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 999984 56789999998753 12222 222333333 34444455667899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCce
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ 521 (747)
|+++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998775 47899999999999876 99999999985
No 184
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.4e-43 Score=349.79 Aligned_cols=178 Identities=32% Similarity=0.532 Sum_probs=165.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999632 23699999999999999999999999999999999999999999999999988766 566788999
Q ss_pred EEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEE
Q 004513 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~il 468 (747)
|++|++.+|+.|++||+ ..+||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEec
Q 004513 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (747)
Q Consensus 469 lLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~G 526 (747)
||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998887789999999999999889999999999998765
No 185
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=367.23 Aligned_cols=218 Identities=23% Similarity=0.424 Sum_probs=183.3
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC--C---CCceEEECCeecCCC--C
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKNL--K 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--p---~~G~I~i~G~~i~~~--~ 379 (747)
+.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... .
T Consensus 3 ~~l~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 5699999999995 3469999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHhhcceEEEeccCcccc-ccHHHHHhcCC---C-CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHH
Q 004513 380 LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---D-ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~---~-~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGG 450 (747)
...+|+.|+|++|++.+|. .|++||+.++. . .+. +++.++++.+++...+ ....+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 4567889999999999997 79999998742 1 122 2233444444332222 12334567899999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChH
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~ 529 (747)
||||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877889999999999985 59999999999999999999
Q ss_pred HHhhc
Q 004513 530 ELLAT 534 (747)
Q Consensus 530 eL~~~ 534 (747)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98754
No 186
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=370.12 Aligned_cols=216 Identities=25% Similarity=0.439 Sum_probs=180.9
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCCCC--HH
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLK--LE 381 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~~~--~~ 381 (747)
-+++|++|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 46899999995 3479999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HhhcceEEEeccCccccccHHHHHhcCC---CC--CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR---DA--TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~--~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
.+|+.++||+|++.+|..|++||+.++. .. .. +++.++++..++.++ +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 5688999999999999899999998752 11 11 122333333332211 12345567789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|+||||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888778999999999999865 999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 754
No 187
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-43 Score=386.78 Aligned_cols=213 Identities=24% Similarity=0.425 Sum_probs=182.2
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
..|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. .|+.
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 3599999999995 3469999999999999999999999999999999999999999999999999987664 4678
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
||||+|++.+|. .||+|||.|+. ..+..+ +.++++.. |+.........+|||||||||+||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l-----------~L~~~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLV-----------HMQEFAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHH
Confidence 999999999996 69999999874 223322 33333333 333344555678999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcc
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
|||+++|++||||||||+||+..+..+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+++|+....
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999988887653 3789999999999875 59999999999999999999998753
No 188
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.3e-43 Score=360.46 Aligned_cols=200 Identities=28% Similarity=0.445 Sum_probs=170.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~lr~ 385 (747)
|+++|++++|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999942 34699999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCC---CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~---~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
.++|++|++.+|. .|++||+.++. ... +++++++++..++.+. ......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK-----------ADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHH
Confidence 8999999999985 79999998752 112 2334445554444333 233346899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCce
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ 521 (747)
||||+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998874 47999999999999875 99999999985
No 189
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-43 Score=364.01 Aligned_cols=216 Identities=25% Similarity=0.419 Sum_probs=181.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecC------CCCHH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK------NLKLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~------~~~~~ 381 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 378999999995 246999999999999999999999999999999999999999999999999873 12345
Q ss_pred HhhcceEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
.+|++|+|++|++.+|. .|++|||.++. ....++.. ..+.+.+..+ |++..+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 67889999999999996 69999997531 12222211 1123334433 5555666677899999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
||||++++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998875 47999999999999865 99999999999999999988754
No 190
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3e-43 Score=359.38 Aligned_cols=201 Identities=26% Similarity=0.458 Sum_probs=170.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH---HHhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~---~~lr~ 385 (747)
|+++|++++|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999953 2469999999999999999999999999999999999999999999999999987654 34678
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
.|+||+|++.+|. .|++||+.++. ..+. +++.++++.+++ +........+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL-----------SHKHRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHhhCChhhcCHHHHHHHHH
Confidence 8999999999997 69999998753 1222 233344444433 333334456899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceE
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~i 522 (747)
|||++++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 57999999999999875 999999999975
No 191
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-43 Score=369.62 Aligned_cols=213 Identities=23% Similarity=0.364 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
..|+++||+++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 3699999999995 3469999999999999999999999999999999999999999999999999988887778889
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC-CC-------C---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR-DA-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~-~~-------~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
|+|++|++.+|. .|++||+.++. .. . ++++.++++..+ ++.........||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG-----------ITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcC-----------CHHHhcCCcccCChHHHHH
Confidence 999999998874 79999998753 11 1 123334444433 3333455677899999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988743 7899999999998754 999999999999999999988
Q ss_pred hh
Q 004513 532 LA 533 (747)
Q Consensus 532 ~~ 533 (747)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 65
No 192
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.7e-43 Score=367.14 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=181.7
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 78999999995 347999999999999999999999999999999999999999999999999998888878888899
Q ss_pred EEeccCccc-cccHHHHHhcCC-CC-------C---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR-DA-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~-~~-------~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
|++|++.++ ..|++||+.++. .. . ++++.++++.+ |+..........||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART-----------ELSHLADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHHHHHHHH
Confidence 999998654 689999998763 11 0 11233333333 3333445567789999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998875 4789999999999995 599999999999999999998765
No 193
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-43 Score=369.63 Aligned_cols=213 Identities=28% Similarity=0.453 Sum_probs=179.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecC--CCCHHHhhcc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRSQ 386 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~--~~~~~~lr~~ 386 (747)
|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.++|.++. ......+|+.
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 68999999995 346999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eEEEeccCc--cccccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 387 IGLVTQEPA--LLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 387 i~~v~Q~~~--lf~~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
|+||+|++. +|..|+.+|+.++. ..+.++ +.++++..++. ........+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-----------HFRHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------hHhcCCchhCCHHHHHHHHH
Confidence 999999986 56789999998752 222222 22333333332 22334567899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
||||+.+|+||||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 999999999999999999999999999999998874 4789999999999985 49999999999999999999887643
No 194
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=368.39 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=183.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~--~~~ 380 (747)
.++++|++++|+ +.++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 599999999995 3469999999999999999999999999999999999997 699999999999853 345
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCC---CCCHH-H----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLD-Q----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~~~~-~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.++|++|++.+|..|++||+.++. ...++ . +.++++..++ .+++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAI-------WDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------cchHHHHHhcCcccCCHHHH
Confidence 56788999999999999899999998753 12221 1 1222222211 12333445667889999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999864 999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 754
No 195
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7.6e-43 Score=360.18 Aligned_cols=207 Identities=25% Similarity=0.350 Sum_probs=173.6
Q ss_pred cEEEEeEEEEecCCCC-CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH---h
Q 004513 308 NIEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~---l 383 (747)
.|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 35999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcceEEEeccCcccc-ccHHHHHhcCC---CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 384 -RSQIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 384 -r~~i~~v~Q~~~lf~-~TireNi~~g~---~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
++.++|++|++.+|. .|++||+.++. ..+ .+++.++++.+++.+ ........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-----------RLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCChhhCCHHHHHH
Confidence 357999999999986 69999998642 122 123344444444333 3334456899999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCceEeEe
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~ 525 (747)
++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998874 37899999999999888999999999999864
No 196
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-43 Score=367.11 Aligned_cols=203 Identities=28% Similarity=0.384 Sum_probs=175.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 599999999995 346999999999999999999999999999999999999999999999998763 457789
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~-~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
+|++|++.+|. .|++||+.++.. ..++++.++++..+ +.........+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVG-----------LADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcC-----------ChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999986 799999988642 12334445555443 333445566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChH
Q 004513 466 SILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~ 529 (747)
++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998763 3789999999999875 59999999999999988764
No 197
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3e-43 Score=359.51 Aligned_cols=197 Identities=26% Similarity=0.423 Sum_probs=165.2
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEE
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~ 389 (747)
+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999952 46999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EeccCcc---ccccHHHHHhcCCCC-----------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 390 VTQEPAL---LSLSIRDNIAYGRDA-----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 390 v~Q~~~l---f~~TireNi~~g~~~-----------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
|+|++.+ |+.|++||+.++... .++++.++++..++.+ .......+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-----------LADRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHH
Confidence 9999986 568999999875421 1123344444444332 33345568999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998875 67899999999999865 9999999886 55554
No 198
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-43 Score=365.16 Aligned_cols=217 Identities=27% Similarity=0.474 Sum_probs=184.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~~--~~ 380 (747)
.|+++||++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 378999999995 3469999999999999999999999999999999999875 4899999999998653 45
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCC---C-CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---D-ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~-~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.++|++|++.+|..|++||+.++. . .+. +++.++++.+++.+++.. ..+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 56788999999999999999999998753 1 122 234445555555444332 23556789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 654
No 199
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=369.58 Aligned_cols=213 Identities=31% Similarity=0.491 Sum_probs=180.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC--CCHHHhhcc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQ 386 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~--~~~~~lr~~ 386 (747)
|+++|++++|+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999952 3469999999999999999999999999999999999999999999999999852 234467889
Q ss_pred eEEEeccC--ccccccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 387 IGLVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 387 i~~v~Q~~--~lf~~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
|+|++|++ .+|..|++|||.++. ..+.+ ++.++++.++ +.........+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVG-----------MEGFENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchhhcCChhhCCHHHHHHHHH
Confidence 99999998 477899999998753 12222 2233333333 3223334567899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|||++.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4789999999999986 5999999999999999999998764
No 200
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=363.49 Aligned_cols=217 Identities=29% Similarity=0.455 Sum_probs=183.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~--~~ 380 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ..
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 488999999995 34699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC---C-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.++|++|++.+|..|++||+.++.. . +. +++.++++.+++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 467888999999999999999999987631 1 12 22334444443322 222334566789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998765 999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
No 201
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-43 Score=355.75 Aligned_cols=200 Identities=24% Similarity=0.386 Sum_probs=170.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++ .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999952 22 39999999999999999999999999999999999999999999999976654 357899
Q ss_pred EEeccCcccc-ccHHHHHhcCCC--C-----CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD--A-----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~--~-----~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+|. .|++||+.++.. . .++++.++++.+++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999996 599999987642 1 1234555555555444333 3445799999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998874 37899999999999865 9999999999998764
No 202
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=357.84 Aligned_cols=209 Identities=25% Similarity=0.413 Sum_probs=178.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++||+++|+. .+ .|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++..... .++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 689999999952 22 39999999999999999999999999999999999999999999999876544 256799
Q ss_pred EEeccCcccc-ccHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~~-------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+|. .|++||+.++... .++++.++++..++.+.+. .....||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-----------RLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999997 5999999875311 1234555666655544443 3445799999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhcc
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
++++|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999999988743 7899999999999865 9999999999999999999987643
No 203
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-43 Score=387.19 Aligned_cols=199 Identities=30% Similarity=0.464 Sum_probs=171.4
Q ss_pred CceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh----hcceEEEeccCcccc-c
Q 004513 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS-L 399 (747)
Q Consensus 325 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l----r~~i~~v~Q~~~lf~-~ 399 (747)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 467999999999996 7
Q ss_pred cHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeC
Q 004513 400 SIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472 (747)
Q Consensus 400 TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDE 472 (747)
|++|||.++. ..+. +++.++++.+ |++........+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~-----------gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQV-----------GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999863 1222 2333444444 34334445567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 473 VTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 473 pTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||++||+.+++.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998774 4789999999999875 5999999999999999999999765
No 204
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=367.31 Aligned_cols=218 Identities=29% Similarity=0.436 Sum_probs=185.8
Q ss_pred cccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecC----
Q 004513 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK---- 376 (747)
Q Consensus 306 ~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~---- 376 (747)
.+.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEEC---CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 45699999999995 24699999999999999999999999999999999999985 7999999998774
Q ss_pred CCCHHHhhcceEEEeccCccccccHHHHHhcCCC---CC-----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 377 NLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 377 ~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~~-----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
......+|+.|+|++|++.+|.+|++|||.++.. .. ++++.++++.+++.+ ++.+..+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 2344567889999999999998999999987531 11 234444554443322 33345567788999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecC
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt 527 (747)
||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877789999999999986 599999999999999999
Q ss_pred hHHHhh
Q 004513 528 HDELLA 533 (747)
Q Consensus 528 ~~eL~~ 533 (747)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 999865
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=370.34 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCC--CC
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LK 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~--~~ 379 (747)
..|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 3589999999995 2469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCCC---CC---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
...+|+.++||+|++.+|..|++||+.++.. .. +++++++++..++...+ ......+..+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHH
Confidence 5567889999999999998899999987531 11 22334444443332111 12345677899999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEE-EEeCceEeEecChHHH
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIA-VMDEGRLFEMGTHDEL 531 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~-vl~~G~ive~Gt~~eL 531 (747)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 99975 5799999999999988
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 653
No 206
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-43 Score=356.68 Aligned_cols=204 Identities=23% Similarity=0.422 Sum_probs=171.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|+++.|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..|+.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 47899999995 3469999999999999999999999999999999999999999999999987753 4577899
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|++|++.+|. .|++||+.++. ..+..+..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 69999998753 112111111 122333333 455555666788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998764 47899999999998865 9999999999998764
No 207
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=366.25 Aligned_cols=217 Identities=28% Similarity=0.464 Sum_probs=183.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. ...
T Consensus 7 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEEC---CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 589999999995 24699999999999999999999999999999999999985 48999999998864 345
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC----CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~----~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+|+.|+||+|++.+|+.|++||+.++.. ..+ +++.++++.+++.+++. ......+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 567889999999999999999999987531 122 22344444444433222 233556779999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEe-----CceEeEec
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD-----EGRLFEMG 526 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~-----~G~ive~G 526 (747)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999888777999999999999865 99999998 59999999
Q ss_pred ChHHHhhc
Q 004513 527 THDELLAT 534 (747)
Q Consensus 527 t~~eL~~~ 534 (747)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998653
No 208
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.5e-42 Score=355.05 Aligned_cols=203 Identities=27% Similarity=0.441 Sum_probs=171.4
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hhhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~lr~ 385 (747)
|+++|++++|+. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 34699999999999999999999999999999999999999999999999999876543 3678
Q ss_pred ceEEEeccCccc-cccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALL-SLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf-~~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
.++|++|++.+| ..|++||+.++. ..+.++ +.++++..+ +.........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVG-----------LLDKAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCCchhCCHHHHHHHHH
Confidence 999999999875 689999998753 223322 223333332 3333344567899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeE
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive 524 (747)
|||++++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998874 47899999999999876 99999999999853
No 209
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=368.12 Aligned_cols=219 Identities=26% Similarity=0.433 Sum_probs=185.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCCC-HH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLK-LE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~~-~~ 381 (747)
.++++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.... ..
T Consensus 21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 589999999995 34799999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HhhcceEEEeccCccccccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCCCHHHHHHH
Q 004513 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISS--LEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~--lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
.+|+.|+|++|++.+|+.|++||+.++. ..+.+++.+.+. +.+.. +...+.+.....+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ-----ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 6788999999999999999999998753 123333322211 11221 222223445677889999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999888667899999999998765 999999999999999999999764
No 210
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-42 Score=344.67 Aligned_cols=172 Identities=38% Similarity=0.603 Sum_probs=161.4
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+.. ..++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999632 346999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEE
Q 004513 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~il 468 (747)
|++|++.+|+.|++||+ ||||||||++||||++++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceE
Q 004513 469 LLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (747)
Q Consensus 469 lLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~i 522 (747)
||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998874 47899999999999888999999999975
No 211
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.2e-43 Score=356.29 Aligned_cols=204 Identities=28% Similarity=0.505 Sum_probs=171.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC--CCHHHhhcc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQ 386 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~--~~~~~lr~~ 386 (747)
|+++|++++|++ .++|+++||++++|+++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999953 469999999999999999999999999999999999999999999999998853 344567889
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAl 461 (747)
|+|++|++.+|. .|++||+.++. ..+.++..+. +.+.+..+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 79999998753 2222221111 12233333 455555666789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceE
Q 004513 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (747)
Q Consensus 462 l~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~i 522 (747)
+++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999975
No 212
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=375.84 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=183.7
Q ss_pred cEEEEeEEEEecCCC-------CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH
Q 004513 308 NIEFRNVYFSYLSRP-------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~-------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~ 380 (747)
-|+++|+++.|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988764
Q ss_pred H---HhhcceEEEeccCc--ccc-ccHHHHHhcCC----CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCC
Q 004513 381 E---WLRSQIGLVTQEPA--LLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (747)
Q Consensus 381 ~---~lr~~i~~v~Q~~~--lf~-~TireNi~~g~----~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~ 446 (747)
+ .+|++|+||+|+|. |+. .|+.+|+.... .... +++.++++.+++.+ .++ ......
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~----~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHY----DRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHh----cCCCcc
Confidence 3 46788999999994 554 69999986421 1222 23344444443321 122 345678
Q ss_pred CCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 447 LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
||||||||++|||||+.+|++||+||||++||+.++..|.+.|+++. .+.|+|+|||+++.+.. ||+|+||.+|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998874 37899999999999975 9999999999999
Q ss_pred EecChHHHhhcc-hHHHH
Q 004513 524 EMGTHDELLATG-DLYAE 540 (747)
Q Consensus 524 e~Gt~~eL~~~~-~~~~~ 540 (747)
|.|+.+++++.. ..|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999998753 33543
No 213
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=361.99 Aligned_cols=217 Identities=27% Similarity=0.410 Sum_probs=180.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC-----CceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~-----~G~I~i~G~~i~~--~~~ 380 (747)
-++++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 378999999995 347999999999999999999999999999999999999874 8999999999865 334
Q ss_pred HHhhcceEEEeccCcccc-ccHHHHHhcCCC---C-CHHHHHHHH----HHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGRD---A-TLDQIEEAA----KIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~TireNi~~g~~---~-~~~~i~~a~----~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
..+|+.|+|++|++.+|. .|++||+.++.. . .+++..+.+ +..++.+. +++ .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~----~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKD----RLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhh----hhcCCcccCCHHH
Confidence 567888999999999987 699999986531 1 222222222 22221111 112 2234567899999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
|||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999875 99999999999999999999
Q ss_pred Hhhc
Q 004513 531 LLAT 534 (747)
Q Consensus 531 L~~~ 534 (747)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 8764
No 214
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.5e-43 Score=374.83 Aligned_cols=199 Identities=25% Similarity=0.393 Sum_probs=170.6
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCcccc-ccHH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIR 402 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Tir 402 (747)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++|||++|++.+|. .|++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-HHHHHhhcEEecCCCCCCCCCcHH
Confidence 4699999999999999999999999999999999999999999999999998763 4567888999999999986 6999
Q ss_pred HHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCC
Q 004513 403 DNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475 (747)
Q Consensus 403 eNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTs 475 (747)
||+.+.. ..+.. ++.++++.+ |+.........+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELF-----------ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9998742 12222 233333333 33333445567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 476 GLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 476 aLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998874 57899999999999875 999999999999999999998653
No 215
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.2e-42 Score=376.05 Aligned_cols=228 Identities=19% Similarity=0.332 Sum_probs=184.8
Q ss_pred cEEEEeEEEEecCC-CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC---CceEEECCeecCCCCHHHh
Q 004513 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~---~G~I~i~G~~i~~~~~~~l 383 (747)
-++++|+++.|+.+ +..++|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.++|.++..++.+.+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 48999999999632 2346999999999999999999999999999999999999996 9999999999998887655
Q ss_pred h----cceEEEeccC--cccc-ccHHHHHhcC----CCCCHHHHH-HHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 384 R----SQIGLVTQEP--ALLS-LSIRDNIAYG----RDATLDQIE-EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 384 r----~~i~~v~Q~~--~lf~-~TireNi~~g----~~~~~~~i~-~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
| +.|+||+|+| .++. .|+.+|+... ...+.++.. ++.+.. +. ..|++++ ..++..+.+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L---~~-vgL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML---DA-VKMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HH-cCCCChH-HHhcCCcccCCHHH
Confidence 3 4799999999 4554 6888887532 122333222 122111 11 1234433 33567888999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecCh
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~ 528 (747)
|||++|||||+.+|++||+||||+|||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|+||.+|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 789999999999986 5999999999999999999
Q ss_pred HHHhhc-chHHHH
Q 004513 529 DELLAT-GDLYAE 540 (747)
Q Consensus 529 ~eL~~~-~~~~~~ 540 (747)
+++.+. ...|.+
T Consensus 247 ~~i~~~p~~pyt~ 259 (330)
T PRK09473 247 RDVFYQPSHPYSI 259 (330)
T ss_pred HHHHhCCCCHHHH
Confidence 999875 234543
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=365.23 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=184.3
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCC--CC
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LK 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~--~~ 379 (747)
..|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..
T Consensus 19 ~~l~~~nl~~~~~---~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYG---GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeC---CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 3699999999995 24699999999999999999999999999999999999864 69999999999864 33
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCCC---C---CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~---~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
...+|+.|+|++|++.+|+.|++|||.++.. . .++.+.++++.+++...+. .........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHH
Confidence 4467889999999999998899999987631 1 1223344455554433222 2345667889999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEe---------CceEe
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD---------EGRLF 523 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~---------~G~iv 523 (747)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999999999998877889999999999886 599999998 89999
Q ss_pred EecChHHHhhc
Q 004513 524 EMGTHDELLAT 534 (747)
Q Consensus 524 e~Gt~~eL~~~ 534 (747)
+.|+.+++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 217
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=365.17 Aligned_cols=217 Identities=26% Similarity=0.365 Sum_probs=185.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCC--CH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~--~~ 380 (747)
.+.+++++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++... ..
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 488999999994 35699999999999999999999999999999999999987 799999999998643 34
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCC---C---CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~---~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
..+|+.|+|++|++.+|..|++|||.++.. . ..+++.++++.+++...+. ...++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHH
Confidence 467888999999999999999999988642 1 1234555666555433332 23456778999999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEe--------CceEeEe
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD--------EGRLFEM 525 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~--------~G~ive~ 525 (747)
++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999998877789999999999876 499999996 8999999
Q ss_pred cChHHHhhc
Q 004513 526 GTHDELLAT 534 (747)
Q Consensus 526 Gt~~eL~~~ 534 (747)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
No 218
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=363.70 Aligned_cols=210 Identities=21% Similarity=0.311 Sum_probs=177.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC---CceEEECCeecCCC-----C
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNL-----K 379 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~---~G~I~i~G~~i~~~-----~ 379 (747)
-|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... .
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 489999999995 356999999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHhhcceEEEeccCcccc-ccHHHHHhcCCC-C-----------C---HHHHHHHHHHHHHHHHHHhccccccccccCC
Q 004513 380 LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRD-A-----------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~~-~-----------~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~ 443 (747)
...+|+.++|++|++.+|. .|++||+.++.. . . .+++.++++.. |++......
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV-----------GMVHFAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc-----------CCHHHHhCC
Confidence 3456788999999999886 699999987631 0 0 11223333333 333344556
Q ss_pred CCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCc
Q 004513 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEG 520 (747)
Q Consensus 444 g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G 520 (747)
...||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 77899999999999999999999999999999999999999999998875 3789999999999865 59999999999
Q ss_pred eEeEecChHHH
Q 004513 521 RLFEMGTHDEL 531 (747)
Q Consensus 521 ~ive~Gt~~eL 531 (747)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
No 219
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=375.10 Aligned_cols=223 Identities=18% Similarity=0.270 Sum_probs=181.0
Q ss_pred EEEEeEEEEecCCCC-CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC----CCCceEEECCeecCCCCHHHh
Q 004513 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD----PTLGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 309 I~~~~v~f~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~----p~~G~I~i~G~~i~~~~~~~l 383 (747)
|+++|+++.|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.++.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999964221 469999999999999999999999999999999999998 489999999999998887654
Q ss_pred h----cceEEEeccCc--ccc-ccHHHHHhc----CCCCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCC
Q 004513 384 R----SQIGLVTQEPA--LLS-LSIRDNIAY----GRDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (747)
Q Consensus 384 r----~~i~~v~Q~~~--lf~-~TireNi~~----g~~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LS 448 (747)
+ +.|+||+|+|. ++. .|+.+++.. ..... .+++.++++.+++.+. .........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 4 36999999995 443 577766542 21122 2234444444433211 123456778999
Q ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEe
Q 004513 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEM 525 (747)
Q Consensus 449 GGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~ 525 (747)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .+.|+|+|||+++.+. .||+|+||.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998875 3789999999999985 5999999999999999
Q ss_pred cChHHHhhcc-hHHH
Q 004513 526 GTHDELLATG-DLYA 539 (747)
Q Consensus 526 Gt~~eL~~~~-~~~~ 539 (747)
|+.+++.+.. ..|.
T Consensus 236 g~~~~~~~~p~hpyt 250 (326)
T PRK11022 236 GKAHDIFRAPRHPYT 250 (326)
T ss_pred CCHHHHhhCCCChHH
Confidence 9999998753 3444
No 220
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=360.41 Aligned_cols=210 Identities=32% Similarity=0.500 Sum_probs=179.4
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~---~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 46899999995 3469999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEeccCcccc-ccHHHHHhcCCC---CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~---~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+|. .|++||+.++.. .+. +++.++++.. |++........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV-----------QLEGYANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 9999999996 599999987531 121 2333333333 34444455557899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
++++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988753 7999999999999865 999999999999999999888654
No 221
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.3e-42 Score=359.54 Aligned_cols=214 Identities=26% Similarity=0.378 Sum_probs=174.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC--CCCCceEEECCeecCCCCHHHh-hc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEWL-RS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~p~~G~I~i~G~~i~~~~~~~l-r~ 385 (747)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 47899999995 346999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCCC----------CCHHHHHHHHHHHHHHHHHHhccccccc-cccCCCC-CCCHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGRD----------ATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGL-ALTEEQK 452 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~~----------~~~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~-~LSGGQk 452 (747)
.++||+|++.+|. .|++||+.+... .+..+..+ .+.+.+..+ |+.. ....... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 5999999999986 699999976421 01111111 112222222 3322 1223333 5999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc--CCEEEEEeCceEeEecChH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~--aD~I~vl~~G~ive~Gt~~ 529 (747)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 47899999999999875 7999999999999999987
Q ss_pred HHh
Q 004513 530 ELL 532 (747)
Q Consensus 530 eL~ 532 (747)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 654
No 222
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=365.88 Aligned_cols=215 Identities=24% Similarity=0.351 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC--------CceEEECCeecCCCCH
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT--------LGEVLLDGENIKNLKL 380 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~--------~G~I~i~G~~i~~~~~ 380 (747)
|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999995 346999999999999999999999999999999999999998 9999999999988877
Q ss_pred HHhhcceEEEeccCc-cccccHHHHHhcCCC-C----C--HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPA-LLSLSIRDNIAYGRD-A----T--LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~-lf~~TireNi~~g~~-~----~--~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+++.++|++|++. +|..|++||+.++.. . . ..+..+ .+.+.++.+ |+++.++....+||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGE-----IAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 778888999999986 568999999987631 1 0 011111 112223332 566667778889999999
Q ss_pred HHHHHhcccc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCc
Q 004513 453 IKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEG 520 (747)
Q Consensus 453 QRialARAll---------~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G 520 (747)
||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999988753 789999999999986 59999999999
Q ss_pred eEeEecChHHHhh
Q 004513 521 RLFEMGTHDELLA 533 (747)
Q Consensus 521 ~ive~Gt~~eL~~ 533 (747)
+|++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999998865
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=362.23 Aligned_cols=217 Identities=26% Similarity=0.458 Sum_probs=181.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~--~~~ 380 (747)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999952 4699999999999999999999999999999999999974 69999999999853 345
Q ss_pred HHhhcceEEEeccCcccc-ccHHHHHhcCCC----CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGRD----ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~TireNi~~g~~----~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
..+|+.|+|++|++.+|. .|++||+.++.. .+.+ ++.++++..++.+. ..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHH
Confidence 567889999999999996 799999986531 1122 22333333333211 1234456678999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEe------CceEeE
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD------EGRLFE 524 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~------~G~ive 524 (747)
|||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999988876789999999999885 599999997 899999
Q ss_pred ecChHHHhhc
Q 004513 525 MGTHDELLAT 534 (747)
Q Consensus 525 ~Gt~~eL~~~ 534 (747)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998753
No 224
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-43 Score=344.63 Aligned_cols=212 Identities=26% Similarity=0.418 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
+++++++++|++ ...+++||||+++.|+++||.|||||||||++++|.+++.|++|.|.+||.|....+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 688999999963 345899999999999999999999999999999999999999999999999998765 56788999
Q ss_pred EEeccCccc-cccHHHHHhcCC---CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~---~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
+++-+.-|+ ..|+||||.|.. +... .++.+..+..+ ++.....+..+||-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~-----------l~~~~~rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQ-----------LLEYLDRRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhC-----------hHHHHHHHHhhhchhhHHHHHHHHH
Confidence 999888888 489999999753 2222 23333333333 3334445556799999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|++||+||+|||||||||..+.+.+++.|.++.. ++++|+.||.++.++ .||+|+++++|+++..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999988864 899999999999998 5999999999999999999998764
No 225
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.8e-42 Score=363.90 Aligned_cols=226 Identities=25% Similarity=0.416 Sum_probs=184.7
Q ss_pred cEEEEeEEEEecCC------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH
Q 004513 308 NIEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~ 381 (747)
.|+++||+++|+.. ++.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 124799999999999999999999999999999999999999999999999998765555
Q ss_pred HhhcceEEEeccCc--ccc-ccHHHHHhcCC----CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHH
Q 004513 382 WLRSQIGLVTQEPA--LLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~--lf~-~TireNi~~g~----~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGG 450 (747)
..++.|+||+|++. ++. .|+.+|+.++. .... +++.++++.+++.. ........+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP----------DHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHHhcCchhcCHH
Confidence 66678999999985 443 58999987532 1122 23344444444311 1122345689999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998874 37899999999999976 99999999999999999
Q ss_pred hHHHhhcc--hHHHHHHH
Q 004513 528 HDELLATG--DLYAELLK 543 (747)
Q Consensus 528 ~~eL~~~~--~~~~~l~~ 543 (747)
++++.... ..+..++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 234 TADVLASPLHELTKRLIA 251 (267)
T ss_pred HHHHhcCCCCHHHHHHHH
Confidence 99997653 44555654
No 226
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3e-42 Score=358.32 Aligned_cols=214 Identities=29% Similarity=0.467 Sum_probs=179.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEEC---CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 47899999995 3469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEeccCcccc-ccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|+||++.+|. .|++||+.++.. .+..... ..+.+.++.+ |+.........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999996 599999987542 1211111 1122333333 232333455578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|+++||||||++||+.+++.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999987654 7899999999998765 999999999999999999998753
No 227
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=371.35 Aligned_cols=218 Identities=26% Similarity=0.449 Sum_probs=184.9
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCCC--C
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNL--K 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~~--~ 379 (747)
..|+++|++++|+ +.++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~---~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYG---DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3589999999995 3469999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCCCC---------------C-----HHHHHHHHHHHHHHHHHHhcccccccc
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA---------------T-----LDQIEEAAKIAHAHTFISSLEKGYETQ 439 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~---------------~-----~~~i~~a~~~~~l~~~i~~lp~G~~t~ 439 (747)
...+|+.|+||+|++.+|+.|++||+.++... . ++++.++++.++ ++.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHH
Confidence 55678899999999999999999999875310 0 112233333332 23344556
Q ss_pred ccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEE-EEE
Q 004513 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYI-AVM 517 (747)
Q Consensus 440 vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I-~vl 517 (747)
....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 67788999999999999999999999999999999999999999999999988777899999999999865 9997 577
Q ss_pred eCceEeEecChHHHhhc
Q 004513 518 DEGRLFEMGTHDELLAT 534 (747)
Q Consensus 518 ~~G~ive~Gt~~eL~~~ 534 (747)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998753
No 228
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=360.89 Aligned_cols=217 Identities=27% Similarity=0.415 Sum_probs=181.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC--C---CCceEEECCeecCC--CCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKN--LKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--p---~~G~I~i~G~~i~~--~~~ 380 (747)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYG---KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEEC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 489999999995 2469999999999999999999999999999999999975 4 59999999998864 334
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCC---CC-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
..+++.++|++|++.+|..|++||+.++. .. .+ +++.++++.+++. .++.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 56778999999999999999999998752 11 11 1222333333222 1222344566789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++++|++|||||||++||+.+++.+.+.|+++.++.|+|+|||+++.+. .||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988876789999999999986 4999999999999999999888
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 754
No 229
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.4e-42 Score=380.69 Aligned_cols=200 Identities=24% Similarity=0.395 Sum_probs=170.3
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCe----ecCCCCHHHh---h-cceEEEeccCc
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE----NIKNLKLEWL---R-SQIGLVTQEPA 395 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~----~i~~~~~~~l---r-~~i~~v~Q~~~ 395 (747)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|. ++...+.+.+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 5666655443 3 57999999999
Q ss_pred ccc-ccHHHHHhcCCC---CCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCE
Q 004513 396 LLS-LSIRDNIAYGRD---ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 396 lf~-~TireNi~~g~~---~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~i 467 (747)
+|+ .|++||+.|+.. .+.+ ++.++++..+ ++........+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vg-----------L~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVG-----------LAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 899999998741 2222 2334444443 33334445568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchh-hcCCEEEEEeCceEeEecChHHHhhc
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i-~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||||||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++..
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999987753 79999999999987 45999999999999999999999865
No 230
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-42 Score=366.00 Aligned_cols=218 Identities=28% Similarity=0.427 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-----CCCceEEECCeecCCC--C
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNL--K 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-----p~~G~I~i~G~~i~~~--~ 379 (747)
..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+.+ |++|+|.++|.++... .
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999952 469999999999999999999999999999999999864 4999999999988643 3
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCCC---C-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~---~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
...+|+.|+||+|++.+|..|++|||.++.. . +. +++.++++..++.+. +..........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-------VSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-------hhhHhhCChhhCCHHH
Confidence 3457889999999999998899999987631 1 11 122333333332211 1223355678999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 99999999999999999999
Q ss_pred Hhhc
Q 004513 531 LLAT 534 (747)
Q Consensus 531 L~~~ 534 (747)
+...
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 8764
No 231
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=362.00 Aligned_cols=218 Identities=30% Similarity=0.474 Sum_probs=183.2
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC-----CceEEECCeecCC--CC
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LK 379 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~-----~G~I~i~G~~i~~--~~ 379 (747)
+.|+++|++++|+. ..+|+|+||+|++|+++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999952 36999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHhhcceEEEeccCccccccHHHHHhcCC---CC-CH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~-~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
...+|+.++|++|++.+|..|++||+.++. .. +. +++.++++.+++.+++ +...+..+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-------KHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 456788999999999999999999998652 11 22 2233344444332222 223466778999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeC-----ceEe
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDE-----GRLF 523 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~-----G~iv 523 (747)
|||++||||++++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998753 47999999999999865 999999999 9999
Q ss_pred EecChHHHhhc
Q 004513 524 EMGTHDELLAT 534 (747)
Q Consensus 524 e~Gt~~eL~~~ 534 (747)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 232
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-42 Score=376.76 Aligned_cols=210 Identities=27% Similarity=0.451 Sum_probs=179.5
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC----CHHHhh
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEWLR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~----~~~~lr 384 (747)
|++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999952 2 23 89999999999999999999999999999999999999999999998653 233467
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
+.|+||+|++.+|. .|++|||.|+. ....+++.++++..+ ++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG-----------IEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcC-----------CchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 78999999999996 79999999875 333445555555554 334445556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhcc
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
++|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999987753 6899999999998765 9999999999999999999998753
No 233
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.1e-42 Score=359.77 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=181.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCee-----cCCCCHHH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN-----IKNLKLEW 382 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~-----i~~~~~~~ 382 (747)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999953 469999999999999999999999999999999999999999999999998 77665543
Q ss_pred ----hhcceEEEeccCc--cc-cccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHH
Q 004513 383 ----LRSQIGLVTQEPA--LL-SLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEE 450 (747)
Q Consensus 383 ----lr~~i~~v~Q~~~--lf-~~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGG 450 (747)
.++.++||+|++. ++ ..|+.+|+.+.. ..+..+..+ .+.+.++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 34 468999986531 111122211 223455555 333 4567888999999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecC
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt 527 (747)
||||++||||++++|+||||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999987643 789999999999997 599999999999999999
Q ss_pred hHHHhhc
Q 004513 528 HDELLAT 534 (747)
Q Consensus 528 ~~eL~~~ 534 (747)
++++...
T Consensus 236 ~~~~~~~ 242 (258)
T PRK11701 236 TDQVLDD 242 (258)
T ss_pred HHHHhcC
Confidence 9998754
No 234
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.3e-42 Score=350.65 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=171.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++||+++|+ . .++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.. .+|+.++
T Consensus 1 ~~~~~l~~~~~---~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYE---H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeC---C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 36899999994 1 468999999999999999999999999999999999999999999999987643 3577899
Q ss_pred EEeccCcccc-ccHHHHHhcCC--CC-----CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR--DA-----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~--~~-----~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
||+|++.+|. .|++||+.++. .. .++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-----------RLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999986 69999998642 11 1234555555555544333 3345799999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecC
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt 527 (747)
++++|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998875 3789999999999876 499999999999999874
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-42 Score=371.42 Aligned_cols=224 Identities=21% Similarity=0.248 Sum_probs=182.0
Q ss_pred EEEEeEEEEecCC-CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC----CCCceEEECCeecCCCCHHHh
Q 004513 309 IEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD----PTLGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 309 I~~~~v~f~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~----p~~G~I~i~G~~i~~~~~~~l 383 (747)
|+++|++++|+.. +...+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7899999999632 23469999999999999999999999999999999999997 589999999999988876654
Q ss_pred ----hcceEEEeccCcc--c-cccHHHHHhcCC---CC------C----HHHHHHHHHHHHHHHHHHhccccccccccCC
Q 004513 384 ----RSQIGLVTQEPAL--L-SLSIRDNIAYGR---DA------T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443 (747)
Q Consensus 384 ----r~~i~~v~Q~~~l--f-~~TireNi~~g~---~~------~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~ 443 (747)
++.|+||+|+|.. + ..||.+|+.... .. . .+++.++++.+++.+. .......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhCC
Confidence 3479999999973 3 369999986421 00 1 1233444444443211 1123455
Q ss_pred CCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCc
Q 004513 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEG 520 (747)
Q Consensus 444 g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G 520 (747)
...|||||||||+|||||+.+|+||||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999988753 7899999999999965 9999999999
Q ss_pred eEeEecChHHHhhc-chHHHH
Q 004513 521 RLFEMGTHDELLAT-GDLYAE 540 (747)
Q Consensus 521 ~ive~Gt~~eL~~~-~~~~~~ 540 (747)
+|++.|+.+++.+. ...|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 99999999999764 234543
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.2e-42 Score=353.83 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=170.8
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC---CCCceEEECCeecCCCCHHHhh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWLR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~---p~~G~I~i~G~~i~~~~~~~lr 384 (747)
+.++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997532 3679999999999999999999999999999999999999 99999999999875 24678
Q ss_pred cceEEEeccCccccc-cHHHHHhcCCC-CCHHHHHHHHHHHHHHH-HHHhccccccccccCCCCCCCHHHHHHHHHhccc
Q 004513 385 SQIGLVTQEPALLSL-SIRDNIAYGRD-ATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~~-TireNi~~g~~-~~~~~i~~a~~~~~l~~-~i~~lp~G~~t~vge~g~~LSGGQkQRialARAl 461 (747)
+.|+|++|++.+|.. |++||+.++.. .......+.......+. .+..+ |+..........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999975 99999987531 10000000111111111 22221 333344556789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCc-chh-hcCCEEEEEeCceEeEec
Q 004513 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRL-SLI-RNADYIAVMDEGRLFEMG 526 (747)
Q Consensus 462 l~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l-~~i-~~aD~I~vl~~G~ive~G 526 (747)
+++|++|||||||++||+.+++.+.+.|+++. .++|+|++||++ +.+ +.||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 478999999998 355 569999999999999876
No 237
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-42 Score=355.24 Aligned_cols=209 Identities=28% Similarity=0.457 Sum_probs=178.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999952 38999999999999999999999999999999999999999999999999887654 367899
Q ss_pred EEeccCcccc-ccHHHHHhcCC-C--CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR-D--ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~-~--~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
|++|++.+|. .|++||+.++. . .+. +++.++++.+++. -.+.....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-----------HLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHHhcCcccCCHHHHHHHHHHHH
Confidence 9999999995 89999998753 1 122 2233344444333 33445557899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
++++|++++|||||++||+.+.+.+.+.++++.. ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988643 7999999999999865 999999999999999999988764
No 238
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-42 Score=342.91 Aligned_cols=221 Identities=28% Similarity=0.420 Sum_probs=188.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
-++++|++..|. ..++|++|||++++||+++|+|+||+|||||+++|+|+.++.+|+|.++|.|+...+++. .|.-
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 378999999995 357999999999999999999999999999999999999999999999999999998775 5788
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRDAT-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~~~-~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|+||||.-.+|+ .||+|||.+|.... +++.++. .+++..+.+|. +......++.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999995 89999999875221 1111111 02222333443 45556778899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcch
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATGD 536 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~~ 536 (747)
|++|+|||||.||-|.-.+.|.+.|+++.+ +-|+++|-++...+. .|||.+||++|+|+.+|+.+||.+...
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999998874 559999999998765 599999999999999999999987644
No 239
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.4e-41 Score=359.71 Aligned_cols=227 Identities=23% Similarity=0.389 Sum_probs=188.0
Q ss_pred EEEEeEEEEecCC------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH--
Q 004513 309 IEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-- 380 (747)
Q Consensus 309 I~~~~v~f~y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-- 380 (747)
|+++||+|+|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999621 13579999999999999999999999999999999999999999999999999987665
Q ss_pred -HHhhcceEEEeccCc--cc-cccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHH
Q 004513 381 -EWLRSQIGLVTQEPA--LL-SLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQ 451 (747)
Q Consensus 381 -~~lr~~i~~v~Q~~~--lf-~~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQ 451 (747)
..+|+.++|++|++. ++ ..|++||+.+.. ..+.. .....+.+.+..+ |+++ ..+..+..|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 346788999999984 44 479999986532 11111 1112233444443 6653 5567788999999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecCh
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~ 528 (747)
|||++|||||+.+|+||||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 7899999999999975 999999999999999999
Q ss_pred HHHhhcchHHHHHH
Q 004513 529 DELLATGDLYAELL 542 (747)
Q Consensus 529 ~eL~~~~~~~~~l~ 542 (747)
+++...+..|...+
T Consensus 237 ~~~~~~~~~~~~~~ 250 (268)
T PRK10419 237 GDKLTFSSPAGRVL 250 (268)
T ss_pred hhccCCCCHHHHHH
Confidence 99987666555443
No 240
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9.3e-42 Score=351.07 Aligned_cols=204 Identities=27% Similarity=0.416 Sum_probs=174.9
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 47899999995 346999999999999999999999999999999999999999999999999875422 24799
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|++|++.+|. .|++||+.++. ..+++++.++++..++.+ .......+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-----------TGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcH-----------HHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 79999998643 233455555665554433 23344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHH
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~e 530 (747)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999985 599999999999999998765
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-42 Score=359.03 Aligned_cols=217 Identities=27% Similarity=0.454 Sum_probs=181.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECC------eecCCCCHH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG------ENIKNLKLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G------~~i~~~~~~ 381 (747)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIN---DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecC---CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 589999999995 35699999999999999999999999999999999999999997666665 666666777
Q ss_pred HhhcceEEEeccCcccc-ccHHHHHhcCC---CC-CHHHH----HHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR---DA-TLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~TireNi~~g~---~~-~~~~i----~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
.+|+.++|++|++.+|. .|++||+.++. .. .+++. .++++..++.+.+ ....+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 78899999999999996 59999998753 11 22233 2222322221111 1234567788999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999988877799999999999985 5999999999999999999998
Q ss_pred hhc
Q 004513 532 LAT 534 (747)
Q Consensus 532 ~~~ 534 (747)
...
T Consensus 240 ~~~ 242 (257)
T PRK14246 240 FTS 242 (257)
T ss_pred HhC
Confidence 764
No 242
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=358.32 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=171.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999952 4699999999999999999999999999999999999999999999999988643 23699
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|++|++.+|. .|++||+.++. .....+..+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE-----IAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 79999998753 122221111 112223333 444444556788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEe--CceEeEecChH
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMD--EGRLFEMGTHD 529 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~--~G~ive~Gt~~ 529 (747)
|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|+|++.++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998863 47999999999998865 99999998 59999988653
No 243
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-41 Score=345.15 Aligned_cols=191 Identities=23% Similarity=0.342 Sum_probs=164.7
Q ss_pred cEEEEeEEEEecCC-CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC---CCCceEEECCeecCCCCHHHh
Q 004513 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~---p~~G~I~i~G~~i~~~~~~~l 383 (747)
.+.++||+|.|+.. ++.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 35679999999999999999999999999999999999999 89999999999988764 356
Q ss_pred hcceEEEeccCcccc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 384 RSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 384 r~~i~~v~Q~~~lf~-~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
|+.++|++|++.+|. .|++|||.++.... ..+....||||||||++||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 778999999998886 69999998753110 23445689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeC-cchh-hcCCEEEEEeCceEeEec
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARR-LSLI-RNADYIAVMDEGRLFEMG 526 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~-l~~i-~~aD~I~vl~~G~ive~G 526 (747)
++|++|||||||++||+.+++.+.+.|+++.+ +.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999988754 4677777665 4665 469999999999998765
No 244
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.3e-41 Score=353.13 Aligned_cols=213 Identities=23% Similarity=0.353 Sum_probs=177.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC----CCceEEECCeecCCCCHHHh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP----TLGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p----~~G~I~i~G~~i~~~~~~~l 383 (747)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3699999999999999999999999999999999999999 999999999988632 223
Q ss_pred hcceEEEeccCc-ccc--ccHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 384 RSQIGLVTQEPA-LLS--LSIRDNIAYG-----RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 384 r~~i~~v~Q~~~-lf~--~TireNi~~g-----~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
++.|+||+|++. .|. .|+.+|+.+. ....++++.++++.+++.+ ..+.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHH
Confidence 467999999985 443 6888887542 2222344555555543321 11245677789999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
+|||||+++|+||||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998864 3789999999999986 59999999999999999999997
Q ss_pred hc
Q 004513 533 AT 534 (747)
Q Consensus 533 ~~ 534 (747)
+.
T Consensus 230 ~~ 231 (254)
T PRK10418 230 NA 231 (254)
T ss_pred hC
Confidence 65
No 245
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.5e-41 Score=348.99 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=172.9
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH---Hhh
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~---~lr 384 (747)
++++|+++.|+... ..++|+|+||++++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 25699999999999999999999999999999999999999999999999999776643 467
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~~----~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
+.|+|++|++.+|. .|+.||+.++.. .+.++..+. +.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER-----ARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999997 799999987541 222222111 12223333 4444455566789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEeCceE
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~~G~i 522 (747)
|++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999998875 37999999999997777999999999986
No 246
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.3e-41 Score=371.70 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=175.6
Q ss_pred eEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC----HHHhhcceE
Q 004513 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK----LEWLRSQIG 388 (747)
Q Consensus 313 ~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~----~~~lr~~i~ 388 (747)
|++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....|+.|+
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999952 2 35 999999999999999999999999999999999999999999999986532 235677899
Q ss_pred EEeccCcccc-ccHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~-~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
||+|++.+|. .|++||+.|+.. ....+.. ..+.+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999996 699999998742 2211111 1112223332 55555666778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 9999999999999999999999988753 7899999999998865 999999999999999999998764
No 247
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=339.13 Aligned_cols=223 Identities=23% Similarity=0.382 Sum_probs=185.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
.+..+|+.++|. .++|++++||+|++||+||+.||||+||||.+.++.|+.+|++|+|.+||.|++.++... -|--
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 478899999995 457999999999999999999999999999999999999999999999999999999764 4667
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
|||+||||.+|. .||+|||+.-........+...+...++..++.+ .+...-...|.+||||||+|+-|||||..+|
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 999999999995 8999999864322221112222333333333333 4555667788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEe-eCc-chhhcCCEEEEEeCceEeEecChHHHhhcc
Q 004513 466 SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA-RRL-SLIRNADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~it-H~l-~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
+.++||||++|+||.+-..|++.|+.+.....-|+|| |.. +++.-|||.+++.+|+|..+|+++|+.++.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999998886544445555 887 567889999999999999999999998764
No 248
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-41 Score=346.45 Aligned_cols=203 Identities=25% Similarity=0.386 Sum_probs=168.8
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC----CHHHhhc
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEWLRS 385 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~----~~~~lr~ 385 (747)
++ ||+++|++ ..+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+|+
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999953 334 99999999 99999999999999999999999999999999999988643 2335678
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~~-~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
.++|++|++.+|. .|++||+.++.. ....+. ...+.+.++.+ |++........+||||||||++||||++.
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 8999999999985 799999987642 221111 11223334443 55556667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEec
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~G 526 (747)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999988743 789999999999886 59999999999998875
No 249
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-41 Score=334.29 Aligned_cols=171 Identities=50% Similarity=0.796 Sum_probs=160.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999632 236999999999999999999999999999999999999999999999999998887778888999
Q ss_pred EEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEE
Q 004513 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~il 468 (747)
|++|++.+|+.|++||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCce
Q 004513 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (747)
Q Consensus 469 lLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ 521 (747)
||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999988877899999999999998899999999985
No 250
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-41 Score=334.97 Aligned_cols=170 Identities=34% Similarity=0.551 Sum_probs=156.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999953 36999999999999999999999999999999999999999999999999987765 56788999
Q ss_pred EEeccCcccc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCE
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~i 467 (747)
|++|++.+|. .|++||+. ||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 9999999987 49999984 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceE
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRL 522 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~i 522 (747)
|||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999998874 4689999999999887 5999999999974
No 251
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-41 Score=336.26 Aligned_cols=172 Identities=35% Similarity=0.592 Sum_probs=158.9
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC--HHHhhcc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEWLRSQ 386 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~--~~~lr~~ 386 (747)
|+++|++++|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++ ...+++.
T Consensus 1 i~~~~l~~~~~---~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEEC---CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 47899999995 246999999999999999999999999999999999999999999999999998775 5667889
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
++|++|++.+|. .|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999885 6999998764 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCce
Q 004513 466 SILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGR 521 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ 521 (747)
+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999988754 589999999999998 599999999985
No 252
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=353.08 Aligned_cols=225 Identities=30% Similarity=0.497 Sum_probs=191.6
Q ss_pred cEEEEeEEEEecCCCC---------------------CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCc
Q 004513 308 NIEFRNVYFSYLSRPE---------------------IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~---------------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G 366 (747)
.|+++||++-|++++. .--++|+||+|+.||++.|.|-||||||||+++|.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5889999998864321 1238999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHh----hcceEEEeccCcccc-ccHHHHHhcCCC---CC----HHHHHHHHHHHHHHHHHHhccc
Q 004513 367 EVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEK 434 (747)
Q Consensus 367 ~I~i~G~~i~~~~~~~l----r~~i~~v~Q~~~lf~-~TireNi~~g~~---~~----~~~i~~a~~~~~l~~~i~~lp~ 434 (747)
+|+++|.|+..++.+.| |++++.|+|...||+ -||.||..||.+ .+ +++..++++.++|+.+-...|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999999998766 467999999999996 899999999962 23 2345667777777776665554
Q ss_pred cccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchh-hcC
Q 004513 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNA 511 (747)
Q Consensus 435 G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i-~~a 511 (747)
+||||||||+.|||||..||+|||+|||+|||||--+..+|+-+.++. -+||+|+|||+|+++ +..
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 599999999999999999999999999999999999999988776553 479999999999876 569
Q ss_pred CEEEEEeCceEeEecChHHHhhcc--hHHHHHHH
Q 004513 512 DYIAVMDEGRLFEMGTHDELLATG--DLYAELLK 543 (747)
Q Consensus 512 D~I~vl~~G~ive~Gt~~eL~~~~--~~~~~l~~ 543 (747)
|||.+|++|+|++.|||+|++.+. +.-+.+++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 999999999999999999999763 33344443
No 253
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.2e-41 Score=351.38 Aligned_cols=217 Identities=26% Similarity=0.383 Sum_probs=180.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCee-----cCCCCHHH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN-----IKNLKLEW 382 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~-----i~~~~~~~ 382 (747)
.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999952 468999999999999999999999999999999999999999999999987 76665543
Q ss_pred ----hhcceEEEeccCc--cc-cccHHHHHhcCC---C-CCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHH
Q 004513 383 ----LRSQIGLVTQEPA--LL-SLSIRDNIAYGR---D-ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEE 450 (747)
Q Consensus 383 ----lr~~i~~v~Q~~~--lf-~~TireNi~~g~---~-~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGG 450 (747)
+++.|+|++|++. ++ ..|+.+|+.+.. . ....+. ...+.+.++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999985 33 468899986421 1 111111 12334555655 443 4667788899999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
||||++|||||+++|++|||||||++||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998764 37899999999999875 99999999999999999
Q ss_pred hHHHhhc
Q 004513 528 HDELLAT 534 (747)
Q Consensus 528 ~~eL~~~ 534 (747)
++++...
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9988754
No 254
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-41 Score=337.95 Aligned_cols=182 Identities=23% Similarity=0.403 Sum_probs=160.8
Q ss_pred cEEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC--CCCCceEEECCeecCCCCHHHhh
Q 004513 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEWLR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~p~~G~I~i~G~~i~~~~~~~lr 384 (747)
.|+++|++|.|+... +.++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 488999999996321 256999999999999999999999999999999999986 489999999999885 4567
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
+.++|++|++.+|. .|++||+.++.. ++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhc
Confidence 78999999998886 699999986420 00 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcch--hhcCCEEEEEeC-ceEeEec
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMDE-GRLFEMG 526 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~--i~~aD~I~vl~~-G~ive~G 526 (747)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998874 47899999999984 456999999999 9999865
No 255
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4e-41 Score=341.71 Aligned_cols=193 Identities=25% Similarity=0.424 Sum_probs=162.0
Q ss_pred EEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH----HHhhcc
Q 004513 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWLRSQ 386 (747)
Q Consensus 311 ~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~----~~lr~~ 386 (747)
++||++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+.. ...++.
T Consensus 1 i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFG---DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEEC---CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 479999995 3469999999999999999999999999999999999999999999999999765432 245778
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCC---CCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~---~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
++|++|++.+|. .|++||+.++.. ... +++.++++.. |++........+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKV-----------GLNLKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CchhhhcCChhhCCHHHHHHHHHH
Confidence 999999999996 799999987531 111 2233333333 333344555678999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEE
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
|||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 478999999999988889999885
No 256
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-41 Score=354.18 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=172.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|++ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999952 3469999999999999999999999999999999999999999999999998752 1223469
Q ss_pred EEEeccCcc---ccccHHHHHhcCCC-------CC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 388 GLVTQEPAL---LSLSIRDNIAYGRD-------AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 388 ~~v~Q~~~l---f~~TireNi~~g~~-------~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
+|++|++.+ +..++++|+.++.. .. ++++.++++..++. ........+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-----------EFRHRQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-----------hHhcCCcccCCHHHHH
Confidence 999999875 45689999875421 01 12233444444333 2233455679999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHH
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL 531 (747)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998874 4789999999998875 59999777 8999999999998
Q ss_pred hh
Q 004513 532 LA 533 (747)
Q Consensus 532 ~~ 533 (747)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 257
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.4e-41 Score=337.81 Aligned_cols=183 Identities=28% Similarity=0.423 Sum_probs=162.0
Q ss_pred cEEEEeEEEEecCC---CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC--CCCCceEEECCeecCCCCHHH
Q 004513 308 NIEFRNVYFSYLSR---PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEW 382 (747)
Q Consensus 308 ~I~~~~v~f~y~~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~p~~G~I~i~G~~i~~~~~~~ 382 (747)
.|+++||+|+|+.. ...++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999631 0257999999999999999999999999999999999999 9999999999998864 25
Q ss_pred hhcceEEEeccCcccc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccc
Q 004513 383 LRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (747)
Q Consensus 383 lr~~i~~v~Q~~~lf~-~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAl 461 (747)
+|+.++|++|++.+|. .|++||+.++... . .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------~-------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL--------------R-------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh--------------c-------------------cCCHHHHHHHHHHHHH
Confidence 6788999999999886 6999999753210 0 7999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcc-hhh-cCCEEEEEeCceEeEec
Q 004513 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLS-LIR-NADYIAVMDEGRLFEMG 526 (747)
Q Consensus 462 l~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~-~i~-~aD~I~vl~~G~ive~G 526 (747)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 4899999999996 454 59999999999998764
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.5e-41 Score=334.68 Aligned_cols=172 Identities=27% Similarity=0.438 Sum_probs=157.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH-HHhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-~~lr~~ 386 (747)
.|+++|++++| +|+++||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 7999999999999999999999999999999999999999999999999988763 456788
Q ss_pred eEEEeccC---ccc-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 387 IGLVTQEP---ALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 387 i~~v~Q~~---~lf-~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
++|++|++ .++ ..|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 344 5899999987421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceE
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~i 522 (747)
++|++|||||||++||+.+++.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998874 47899999999998876 999999999975
No 259
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.9e-40 Score=347.31 Aligned_cols=217 Identities=26% Similarity=0.374 Sum_probs=175.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcC--CCCCCceEEECCeecCCCCHHHhhc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~--~~p~~G~I~i~G~~i~~~~~~~lr~ 385 (747)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVN---ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeC---CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 489999999995 34699999999999999999999999999999999998 6899999999999998887665554
Q ss_pred -ceEEEeccCcccc-ccHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCC-CCCHHHHHH
Q 004513 386 -QIGLVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGL-ALTEEQKIK 454 (747)
Q Consensus 386 -~i~~v~Q~~~lf~-~TireNi~~g~~~-------~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~-~LSGGQkQR 454 (747)
.++|++|++.+|. .|+++|+.++... .+.+..+.. ..+.+.+..+ |+. +..+.... .||||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence 4899999999996 5899998764210 000000000 0111222222 332 23444444 599999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc--CCEEEEEeCceEeEecChHHH
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~--aD~I~vl~~G~ive~Gt~~eL 531 (747)
++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999998775 47999999999998874 899999999999999998843
No 260
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.9e-40 Score=344.96 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=169.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC--CCCCceEEECCeecCCCCHHHhh-c
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEWLR-S 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~p~~G~I~i~G~~i~~~~~~~lr-~ 385 (747)
|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|++ +|++|+|.++|.++...+....+ +
T Consensus 2 i~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVE---DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 78999999995 346999999999999999999999999999999999994 79999999999999887766554 5
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCC-CCCHHHHHHHHHHHH----HHHHHH--hccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAH----AHTFIS--SLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~-~~~~~~i~~a~~~~~----l~~~i~--~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
.++|++|++.++. .|..+++.+.. ........+.++..+ +...+. .+|+++.+... ...||||||||++|
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHH
Confidence 7999999998775 36555543211 000000000011111 112222 24444333221 13799999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc--CCEEEEEeCceEeEecChHHH
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~--aD~I~vl~~G~ive~Gt~~eL 531 (747)
|||++++|+||||||||++||+.+.+.+.+.|+.+. .++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988775 37899999999999876 899999999999999998854
No 261
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.6e-40 Score=346.90 Aligned_cols=208 Identities=24% Similarity=0.367 Sum_probs=177.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-|+++||+++|+ +.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEEC---CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 488999999995 34699999999999999999999999999999999999999999999987 2369
Q ss_pred EEEeccCcccc---ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 388 GLVTQEPALLS---LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 388 ~~v~Q~~~lf~---~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
+|++|++.++. .|+++|+.+....+++++.++++.+++.+.+. .....||||||||++||||++++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998764 48999987654445666777777776654433 34568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcchHHHHH
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l 541 (747)
|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++ +|++.|+++++.. ...+.++
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~ 216 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISM 216 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHH
Confidence 999999999999999999999999987743 789999999999985 5999999965 7999999999864 3445555
Q ss_pred H
Q 004513 542 L 542 (747)
Q Consensus 542 ~ 542 (747)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.5e-40 Score=327.45 Aligned_cols=164 Identities=24% Similarity=0.355 Sum_probs=151.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 478999999953 246999999999999999999999999999999999999999999999983 5799
Q ss_pred EEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEE
Q 004513 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~il 468 (747)
|++|++.++++|++||+.++ ....||||||||++||||++++|+++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999864 34689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCce
Q 004513 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (747)
Q Consensus 469 lLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ 521 (747)
||||||++||+.+.+.+.+.++++ ++|+|++||+++....||+|++|++|-
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999876 589999999998888899999998763
No 263
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.1e-40 Score=378.37 Aligned_cols=212 Identities=26% Similarity=0.411 Sum_probs=181.5
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhh-cc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR-SQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr-~~ 386 (747)
.|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 499999999995 34699999999999999999999999999999999999999999999999999877766554 56
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCCCC---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRDAT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~~~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
++||+|++.+|. .|++||+.++.... ++++.++++.. |++........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-----------GCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc-----------CCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 69999999875221 12233333332 3443445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998764 47899999999998865 99999999999999999998764
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.1e-40 Score=334.72 Aligned_cols=185 Identities=32% Similarity=0.468 Sum_probs=163.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcC--CCCCCceEEECCeecCCCCHHHh-hc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEWL-RS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~--~~p~~G~I~i~G~~i~~~~~~~l-r~ 385 (747)
++++|++++|+ +.++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVG---GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeC---CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 46899999995 34699999999999999999999999999999999999 58999999999999988876544 55
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
+++|++|++.+|+ .|+++|+ .. ...+||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcC
Confidence 6999999999987 4666655 00 1147999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh--cCCEEEEEeCceEeEecChHHHh
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR--NADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~--~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|+|+||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998875 4789999999999987 69999999999999999 45453
No 265
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.2e-40 Score=345.50 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=174.0
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEE
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~ 389 (747)
+++||++. .+|+|+||+|++|++++|+||||||||||+++|+|++++ +|+|.++|.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 56788774 279999999999999999999999999999999999965 8999999999988887788888999
Q ss_pred EeccCccc-cccHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc---
Q 004513 390 VTQEPALL-SLSIRDNIAYGRD--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL--- 463 (747)
Q Consensus 390 v~Q~~~lf-~~TireNi~~g~~--~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~--- 463 (747)
++|++.++ ..|+++|+.++.. .+..+.. ..+++.++.+ |++.........||||||||++|||||+.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 99998654 6899999998642 1111111 1122233333 44444556678999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhh
Q 004513 464 ----NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 464 ----~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998775 5789999999999775 599999999999999999998865
No 266
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=379.32 Aligned_cols=216 Identities=25% Similarity=0.381 Sum_probs=181.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC--CCceEEECCeecCCCCHHH-hh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEW-LR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p--~~G~I~i~G~~i~~~~~~~-lr 384 (747)
-|+++|++++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 489999999995 34699999999999999999999999999999999999996 8999999999998776543 46
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~~------~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
+.|+||+|++.+|. .|++||+.++.. .+.++..+. +.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998885 799999988642 122222111 22233333 44444556677899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
||||+.+|+||||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 999999999999999999999999999999998764 57899999999999865 99999999999999999888743
No 267
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.5e-40 Score=377.32 Aligned_cols=215 Identities=23% Similarity=0.377 Sum_probs=179.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
-|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 389999999995 346999999999999999999999999999999999999999999999999987655443 4578
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~~-------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
|+||+|++.+|. .|++||+.++... +..+.++ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998885 7999999986421 1221111 112233333 444444556678999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHh
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999998764 47899999999998865 9999999999999999988764
No 268
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=378.99 Aligned_cols=216 Identities=23% Similarity=0.379 Sum_probs=180.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
-|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 489999999995 346999999999999999999999999999999999999999999999999998777554 3567
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCC-C---------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRD-A---------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~-~---------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
|+||+|++.+|. .|++||+.++.. . +.++..+ .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998885 699999987531 0 1111111 112223333 444444556678999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|||||+.+|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998764 47899999999999875 99999999999999999988754
No 269
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-40 Score=338.02 Aligned_cols=220 Identities=28% Similarity=0.445 Sum_probs=188.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh-hcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l-r~~i 387 (747)
+++++++++|+ ...+++|+||++++||++||+|||||||||++|+|.|+|+|++|+|.++|.||..+++... |.-|
T Consensus 5 L~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 67899999994 5679999999999999999999999999999999999999999999999999999998764 6679
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC-C-----------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD-A-----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~-~-----------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
+--+|.+.+|+ .||.||++.+.. . ...+-.++.+.+ .+.++.+ |+.....+...+||+||++|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 99999999995 899999987631 1 001112222222 2223332 77777788888999999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
+.|||||+.+|++|+||||.+||.+.....+.+.|+++.+ +.|+++|-|++..+.. ||||+||+.|+++.+|+|+|.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999988874 4899999999999876 999999999999999999999
Q ss_pred hhcc
Q 004513 532 LATG 535 (747)
Q Consensus 532 ~~~~ 535 (747)
.+..
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 8754
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.3e-40 Score=369.71 Aligned_cols=225 Identities=27% Similarity=0.439 Sum_probs=185.8
Q ss_pred cEEEEeEEEEecCC--------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCee--cCC
Q 004513 308 NIEFRNVYFSYLSR--------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN--IKN 377 (747)
Q Consensus 308 ~I~~~~v~f~y~~~--------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~--i~~ 377 (747)
-++++|++++|..+ ....+++||||+|++||++||||+||||||||.++|+|+++|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999742 23568999999999999999999999999999999999999999999999987 232
Q ss_pred CCHHHhhcceEEEeccCcc--c-cccHHHHHhcCC----CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCC
Q 004513 378 LKLEWLRSQIGLVTQEPAL--L-SLSIRDNIAYGR----DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (747)
Q Consensus 378 ~~~~~lr~~i~~v~Q~~~l--f-~~TireNi~~g~----~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~ 446 (747)
-....+|+++-+|+|+|.- - ..||+++|.-.- ... ++++.+.++.+++... ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCchh
Confidence 2345678899999999973 3 389999986321 111 1234455555544321 34556778
Q ss_pred CCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 447 LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
||||||||+||||||..+|+++|+|||||+||+.++..|.+.|.++.+ |-|.|+|||++..++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999987753 6899999999999987 9999999999999
Q ss_pred EecChHHHhhc-chHHHHHH
Q 004513 524 EMGTHDELLAT-GDLYAELL 542 (747)
Q Consensus 524 e~Gt~~eL~~~-~~~~~~l~ 542 (747)
|.|+.+++.+. ...|.+.+
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999998876 45666543
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=385.21 Aligned_cols=216 Identities=23% Similarity=0.362 Sum_probs=180.5
Q ss_pred cEEEEeEEEEecCCC--------CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC
Q 004513 308 NIEFRNVYFSYLSRP--------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~ 379 (747)
-|+++|+++.|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 246899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HhhcceEEEeccCc--ccc-ccHHHHHhcCC---CC-CH----HHHHHHHHHHHHHHHHHhcccccc-ccccCCC
Q 004513 380 LE---WLRSQIGLVTQEPA--LLS-LSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYE-TQVGRAG 444 (747)
Q Consensus 380 ~~---~lr~~i~~v~Q~~~--lf~-~TireNi~~g~---~~-~~----~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g 444 (747)
.. .+|++|+||+|++. ++. .||.||+.++. .. .. +++.++++.+ |++ .......
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~-----------gL~~~~~~~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV-----------GLLPEHAWRYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-----------CCCHHHhhCCc
Confidence 43 35778999999984 664 79999997642 11 12 1223333333 332 2334556
Q ss_pred CCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCce
Q 004513 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (747)
Q Consensus 445 ~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ 521 (747)
.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999999998874 37899999999999875 99999999999
Q ss_pred EeEecChHHHhhc
Q 004513 522 LFEMGTHDELLAT 534 (747)
Q Consensus 522 ive~Gt~~eL~~~ 534 (747)
|++.|+.+++...
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999999764
No 272
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3e-40 Score=341.73 Aligned_cols=199 Identities=29% Similarity=0.397 Sum_probs=164.6
Q ss_pred ceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC----CCceEEECCeecCCCCHHHhhcceEEEeccCc-cc-c-
Q 004513 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP----TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA-LL-S- 398 (747)
Q Consensus 326 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p----~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~-lf-~- 398 (747)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... +..++.|+|++|++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998654 223468999999995 34 3
Q ss_pred ccHHHHHhcCC---CC-C---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Q 004513 399 LSIRDNIAYGR---DA-T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471 (747)
Q Consensus 399 ~TireNi~~g~---~~-~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLD 471 (747)
.|+.+|+.+.. .. . .+++.++++.+++ +++ .+.....+.+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGL-------PDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCC-------Cch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 69999986532 11 1 1223333333322 111 14456677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 472 EVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 472 EpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999988753 789999999999986 5999999999999999999999764
No 273
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=7.8e-40 Score=331.95 Aligned_cols=194 Identities=22% Similarity=0.318 Sum_probs=166.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERD---GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeC---CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 47899999995 346999999999999999999999999999999999999999999999999986543 46788999
Q ss_pred EEeccCccc-cccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
|++|++.++ ..|++||+.+.. ...++++.++++..++.+.. .....+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-----------DRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 589999998764 33455666677766554322 23456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchh-hcCCEEEEE
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RNADYIAVM 517 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i-~~aD~I~vl 517 (747)
++||||||++||+.+++.+.+.|+++. .++|+|++||+...+ ..||+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 478999999987655 569999877
No 274
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.5e-40 Score=328.83 Aligned_cols=177 Identities=29% Similarity=0.490 Sum_probs=157.5
Q ss_pred EEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEE
Q 004513 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (747)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~ 389 (747)
+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999953 469999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEE
Q 004513 390 VTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILL 469 (747)
Q Consensus 390 v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ill 469 (747)
++| +++.+++.+++ ...+.+||||||||++||||++++|++||
T Consensus 78 ~~q--------------------------~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ--------------------------ALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH--------------------------HHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 44444444332 23567899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEec
Q 004513 470 LDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (747)
Q Consensus 470 LDEpTsaLD~~~~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~G 526 (747)
|||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999988754 789999999999984 59999999999998754
No 275
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.8e-40 Score=340.10 Aligned_cols=195 Identities=27% Similarity=0.395 Sum_probs=158.8
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEe-ccCccc-cccH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT-QEPALL-SLSI 401 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~-Q~~~lf-~~Ti 401 (747)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hhhcccEEEEcCCccccCCCCcH
Confidence 46999999999999999999999999999999999999999999999999875533 45678899998 566776 5899
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCC
Q 004513 402 RDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478 (747)
Q Consensus 402 reNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD 478 (747)
+||+.+.. ..+.++..+.++ ..++.+ |++.........||||||||++|||||+.+|++|||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLD-----ELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99997653 223333222211 112221 33222334456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 479 FEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 479 ~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999998874 36899999999998865 9999999999998765
No 276
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.7e-40 Score=341.23 Aligned_cols=193 Identities=27% Similarity=0.416 Sum_probs=159.9
Q ss_pred eeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCcccc-ccHHHHH
Q 004513 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNI 405 (747)
Q Consensus 327 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~-~TireNi 405 (747)
|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999986 7999999
Q ss_pred hcCC-----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHH
Q 004513 406 AYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (747)
Q Consensus 406 ~~g~-----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~ 480 (747)
.++. ..++++..+. +.+.++.+ |++.........||||||||++|||||+.+|++|||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAI-----VEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHHH-----HHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8742 1222221111 11222222 3444445566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHH
Q 004513 481 AERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 481 ~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL 531 (747)
+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999998764 37899999999998765 999999999999999976665
No 277
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-39 Score=330.49 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=161.9
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeC---CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 68999999995 3469999999999999999999999999999999999999999999999998865 3456788999
Q ss_pred EEeccCccc-cccHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 389 LVTQEPALL-SLSIRDNIAYGRD--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~~--~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
|++|++.++ ..|++||+.++.. ..+.++.++++..++ .........+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSL-----------EHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCC-----------chhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999987 5899999998641 122233333333222 22233344579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhcCCEEEE
Q 004513 466 SILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRNADYIAV 516 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~aD~I~v 516 (747)
++|||||||++||+.+...+.+.|+++ ..++|+|++||+...+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999876 357899999999999999997654
No 278
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-39 Score=319.33 Aligned_cols=159 Identities=30% Similarity=0.492 Sum_probs=147.5
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH-HHhhcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-~~lr~~i 387 (747)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..|+.+
T Consensus 1 l~~~~l~~~~~---~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 57899999995 3469999999999999999999999999999999999999999999999999988775 4467789
Q ss_pred EEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCE
Q 004513 388 GLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 388 ~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~i 467 (747)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeE
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive 524 (747)
|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999998874 47899999999998765 99999999999975
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=372.64 Aligned_cols=212 Identities=24% Similarity=0.336 Sum_probs=178.1
Q ss_pred EEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH-HHhhcceEE
Q 004513 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQIGL 389 (747)
Q Consensus 311 ~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-~~lr~~i~~ 389 (747)
++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999995 3469999999999999999999999999999999999999999999999999876554 345778999
Q ss_pred EeccCcccc-ccHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 390 VTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 390 v~Q~~~lf~-~TireNi~~g~~------~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
|+|++.+|. .|++||+.++.. .+.++..+ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998774 799999987641 12222111 122333433 5555556677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHh
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998764 57899999999998865 9999999999999999988864
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.4e-40 Score=373.73 Aligned_cols=211 Identities=23% Similarity=0.259 Sum_probs=179.4
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 889999999953 45999999999999999999999999999999999999999999999998887766666777899
Q ss_pred EEeccCcc---------ccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 389 LVTQEPAL---------LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 389 ~v~Q~~~l---------f~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
|++|++.+ +..|+++|+.++.. .++++.++++..++ +.........||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGI-----------TALLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCC-----------HhhhhCCcccCCHHHHHHHHHHH
Confidence 99998753 24689999876421 23345555555443 33334556789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998864 47899999999998865 999999999999999999887653
No 281
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-39 Score=330.05 Aligned_cols=194 Identities=21% Similarity=0.289 Sum_probs=165.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERD---ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEEC---CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 68999999995 346999999999999999999999999999999999999999999999999987654 35677899
Q ss_pred EEeccCcccc-ccHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~----~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
|++|++.++. .|++||+.++.. .+++++.++++..++.++. ......||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998885 799999987642 2334555666666554332 33456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEE
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVM 517 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl 517 (747)
+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998764 47899999999999966 4677665
No 282
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=342.10 Aligned_cols=227 Identities=26% Similarity=0.433 Sum_probs=182.0
Q ss_pred EEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-C----CCceEEECCeecCCCCHHH
Q 004513 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-P----TLGEVLLDGENIKNLKLEW 382 (747)
Q Consensus 309 I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-p----~~G~I~i~G~~i~~~~~~~ 382 (747)
++++|++..|.... ...+++||||+|++||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996532 3578999999999999999999999999999999999998 3 6799999999999999775
Q ss_pred h----hcceEEEeccCcc-cc--ccHHHHH----hcCCCC-C----HHHHHHHHHHHHHHHHHHhccccccccccCCCCC
Q 004513 383 L----RSQIGLVTQEPAL-LS--LSIRDNI----AYGRDA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (747)
Q Consensus 383 l----r~~i~~v~Q~~~l-f~--~TireNi----~~g~~~-~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~ 446 (747)
+ .+.|++|+|+|.- |+ .||.+-+ ...... . .++..+.++.+++.+- +.....-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 3 3579999999862 33 4555544 332222 1 2244555555554321 1123444567
Q ss_pred CCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 447 LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
||||||||+.||-||+.+|++||.||||+|||..++.+|.+.|+++. .+.++|+|||++..+.. ||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998875 48899999999998865 9999999999999
Q ss_pred EecChHHHhhcc-hHHH-HHHH
Q 004513 524 EMGTHDELLATG-DLYA-ELLK 543 (747)
Q Consensus 524 e~Gt~~eL~~~~-~~~~-~l~~ 543 (747)
|.|+.+++++.. -.|. .|++
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 999999999863 3454 3443
No 283
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=370.66 Aligned_cols=211 Identities=22% Similarity=0.356 Sum_probs=175.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH-HHhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-~~lr~~ 386 (747)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~------~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
|+||+|++.+|. .|++||+.++.. .+..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999999886 699999998631 11222111 122333333 3433345566789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecCh
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~ 528 (747)
||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999998764 47899999999998865 999999999999877653
No 284
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.3e-37 Score=388.01 Aligned_cols=219 Identities=23% Similarity=0.321 Sum_probs=184.0
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
..|+++|++++|++ ..+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .....|+.
T Consensus 1936 ~~L~v~nLsK~Y~~-~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECC-CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 35999999999953 23579999999999999999999999999999999999999999999999999865 34567888
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
|||+||++.++. .|++|||.+.. ..+.+++.+.++ +.++.+ |+..........||||||||++|||||+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~-----~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVAN-----WSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999885 79999998632 223333222211 122222 3444445556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
.+|+||||||||+|||+.+++.+++.|+++ .+|+|+|++||+++.++. ||||++|++|+++..|++++|.++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999886 458999999999999875 999999999999999999999765
No 285
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=382.10 Aligned_cols=220 Identities=21% Similarity=0.361 Sum_probs=177.8
Q ss_pred cEEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecC----------
Q 004513 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK---------- 376 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~---------- 376 (747)
-|+++|++++|+... ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999995321 347999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---Hhh-cceEEEeccC--cccc-ccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccc---cccccC
Q 004513 377 NLKLE---WLR-SQIGLVTQEP--ALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGY---ETQVGR 442 (747)
Q Consensus 377 ~~~~~---~lr-~~i~~v~Q~~--~lf~-~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~---~t~vge 442 (747)
+.+.. .+| ++||||+|+| .++. .||+|||.++. ..+..+..+. +.+.+..+ |+ +.....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVE-----AKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHC--CCCChhhHHhC
Confidence 22222 233 5799999998 5665 79999998752 1222221111 11222222 33 223456
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEeeCcchhhc-CCEEEEEeC
Q 004513 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMDE 519 (747)
Q Consensus 443 ~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~-~~t~I~itH~l~~i~~-aD~I~vl~~ 519 (747)
...+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.++++. + ++|+|+|||+++.+.. ||+|++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 678899999999999999999999999999999999999999999998875 3 7899999999999865 999999999
Q ss_pred ceEeEecChHHHhhc
Q 004513 520 GRLFEMGTHDELLAT 534 (747)
Q Consensus 520 G~ive~Gt~~eL~~~ 534 (747)
|+|++.|++++++..
T Consensus 245 G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 245 GEAVETGSVEQIFHA 259 (623)
T ss_pred CeecccCCHHHhhcC
Confidence 999999999998753
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.2e-39 Score=374.06 Aligned_cols=219 Identities=25% Similarity=0.416 Sum_probs=179.2
Q ss_pred cEEEEeEEEEecCC--------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC
Q 004513 308 NIEFRNVYFSYLSR--------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379 (747)
Q Consensus 308 ~I~~~~v~f~y~~~--------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~ 379 (747)
-|+++|++++|+.. .+.++|+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999521 13569999999999999999999999999999999999995 8999999999987765
Q ss_pred HHH---hhcceEEEeccC--cccc-ccHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCC
Q 004513 380 LEW---LRSQIGLVTQEP--ALLS-LSIRDNIAYGRD-----ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLAL 447 (747)
Q Consensus 380 ~~~---lr~~i~~v~Q~~--~lf~-~TireNi~~g~~-----~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~L 447 (747)
... +|++|+||+|++ .+|. .|++||+.++.. .+..+.. ..+.+.+..+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc--CCCHHHHhcCCccC
Confidence 433 467899999998 3664 799999987521 1211111 1122233333 443 2345567789
Q ss_pred CHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeE
Q 004513 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (747)
Q Consensus 448 SGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive 524 (747)
|||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 37899999999998865 99999999999999
Q ss_pred ecChHHHhhc
Q 004513 525 MGTHDELLAT 534 (747)
Q Consensus 525 ~Gt~~eL~~~ 534 (747)
.|++++++..
T Consensus 507 ~~~~~~~~~~ 516 (529)
T PRK15134 507 QGDCERVFAA 516 (529)
T ss_pred EcCHHHHhcC
Confidence 9999998754
No 287
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.1e-39 Score=369.32 Aligned_cols=214 Identities=22% Similarity=0.360 Sum_probs=176.6
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC--CCceEEECCeecCCCCHHH-hhc
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEW-LRS 385 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p--~~G~I~i~G~~i~~~~~~~-lr~ 385 (747)
|+++|++++|+ +.++|+||||++++|+++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999995 34699999999999999999999999999999999999997 7999999999998776544 467
Q ss_pred ceEEEeccCcccc-ccHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHHHhccccccccc-cCCCCCCCHHHHHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYETQV-GRAGLALTEEQKIKLS 456 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g~~~-------~~~~i~~a~~~~~l~~~i~~lp~G~~t~v-ge~g~~LSGGQkQRia 456 (747)
.|+||+|++.+|. .|++||+.++... ..++..+ .+.+.++.+ |+.... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 7999999998885 6999999876421 1112111 122333333 332221 2335689999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHh
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 9999999999999999999999999999999998764 47899999999999875 9999999999999999877653
No 288
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.9e-39 Score=327.31 Aligned_cols=195 Identities=20% Similarity=0.253 Sum_probs=162.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-|+++|++++|+ +.++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRN---EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecC---CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 489999999995 34699999999999999999999999999999999999999999999999988653 345679
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC---CC-HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD---AT-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~---~~-~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
+|++|++.+|. .|++||+.++.. .. ++.+.++++.. |+..........||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-----------GLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-----------CChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 99999999887 499999976531 11 22223333332 2222334455789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhc-CCEEEEEeC
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDE 519 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~-aD~I~vl~~ 519 (747)
++|++|||||||++||+.+.+.+.+.++++ .+++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999765 357899999999999865 999999864
No 289
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.9e-39 Score=326.99 Aligned_cols=193 Identities=22% Similarity=0.263 Sum_probs=164.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|+++.|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRG---GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEEC---CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 78999999995 2469999999999999999999999999999999999999999999999998753 22 788899
Q ss_pred EEeccCccc-cccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|++|++.++ ..|++||+.+.. ...++++.++++..++.++. ......||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-----------HLPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------cCChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 589999998643 22344566666666554322 223357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
|++|||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. |+++-++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 457899999999999988 99988754
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.2e-39 Score=369.71 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=177.7
Q ss_pred cEEEEeEEEEecCC-CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCCCHH
Q 004513 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~~~~ 381 (747)
-|+++|++++|+.. ...++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 124799999999999999999999999999999999999997 799999999999876643
Q ss_pred H---hh-cceEEEeccCc--ccc-ccHHHHHhcCC----CCCH----HHHHHHHHHHHHHHHHHhccccccccccCCCCC
Q 004513 382 W---LR-SQIGLVTQEPA--LLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (747)
Q Consensus 382 ~---lr-~~i~~v~Q~~~--lf~-~TireNi~~g~----~~~~----~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~ 446 (747)
. +| ++||||+|++. ++. .|+++|+.+.. ..+. +++.++++.+++.+ +.........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------~~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQ--------AAKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hHHHHhhCCcc
Confidence 2 33 57999999985 443 69999986421 1222 22333333332211 00123456678
Q ss_pred CCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 447 LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37899999999998865 9999999999999
Q ss_pred EecChHHHhhc
Q 004513 524 EMGTHDELLAT 534 (747)
Q Consensus 524 e~Gt~~eL~~~ 534 (747)
+.|+++++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998753
No 291
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.8e-39 Score=323.65 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=160.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRG---ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 47899999995 346999999999999999999999999999999999999999999999999987765 35678899
Q ss_pred EEeccCcccc-ccHHHHHhcCCC-C--CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD-A--TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~-~--~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|++|++.+|. .|++||+.+... . .++++.++++..++.+.+ .....+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-----------DLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-----------cCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 799999987531 1 123455666665554332 334568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhcCCEEEE
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRNADYIAV 516 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~aD~I~v 516 (747)
|+++||||||++||+.+.+.+.+.|+++ ..++|+|++||+...+. |++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999876 45789999999985432 455543
No 292
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=334.14 Aligned_cols=215 Identities=20% Similarity=0.300 Sum_probs=175.3
Q ss_pred cEEEEeEEEEecCC-----------------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEE
Q 004513 308 NIEFRNVYFSYLSR-----------------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-----------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i 370 (747)
.|+++||++.|... ...++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 58889998887532 2346899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCC
Q 004513 371 DGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (747)
Q Consensus 371 ~G~~i~~~~~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~ 446 (747)
+| .+++++|++.+++ .|++||+.++. ..+.++..+.++. .+.. .|++..+.....+
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~--~~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPK-----IIEF--SELGEFIYQPVKK 143 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHH--cCCchhhcCCccc
Confidence 99 3678888887774 79999998642 2333333332211 1111 1344455667789
Q ss_pred CCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeE
Q 004513 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (747)
Q Consensus 447 LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive 524 (747)
||||||||++||||++++|+||||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987764 57899999999999865 99999999999999
Q ss_pred ecChHHHhhcchHHHHHH
Q 004513 525 MGTHDELLATGDLYAELL 542 (747)
Q Consensus 525 ~Gt~~eL~~~~~~~~~l~ 542 (747)
.|+++++......|.+..
T Consensus 224 ~g~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 224 YGELDDVLPKYEAFLNDF 241 (264)
T ss_pred eCCHHHHHHHhHHHHHHH
Confidence 999999987644444433
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.1e-39 Score=369.05 Aligned_cols=219 Identities=22% Similarity=0.407 Sum_probs=176.0
Q ss_pred cEEEEeEEEEecC--CCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEEC-Cee---cCCCC--
Q 004513 308 NIEFRNVYFSYLS--RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD-GEN---IKNLK-- 379 (747)
Q Consensus 308 ~I~~~~v~f~y~~--~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~-G~~---i~~~~-- 379 (747)
.|+++|++++|++ +++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999952 123469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHhhcceEEEeccCcccc-ccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhccccccc-----cccCCCCCCCHH
Q 004513 380 -LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYET-----QVGRAGLALTEE 450 (747)
Q Consensus 380 -~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~--~~~~~~i~~a~~~~~l~~~i~~lp~G~~t-----~vge~g~~LSGG 450 (747)
...+|++|+||+|++.+|. .|++||+.++. ....++.. ..+.+.+..+ |+.. .......+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 2345678999999998886 79999998632 11111111 1112233332 3321 245566789999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998774 37899999999999865 99999999999999999
Q ss_pred hHHHhh
Q 004513 528 HDELLA 533 (747)
Q Consensus 528 ~~eL~~ 533 (747)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 988754
No 294
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-39 Score=368.56 Aligned_cols=218 Identities=23% Similarity=0.335 Sum_probs=178.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC-CCCceEEECCeecCCCCH-HHhhc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-PTLGEVLLDGENIKNLKL-EWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-p~~G~I~i~G~~i~~~~~-~~lr~ 385 (747)
.|+++|++++|+.+++.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223569999999999999999999999999999999999999 599999999999865543 34577
Q ss_pred ceEEEeccC---ccc-cccHHHHHhcCC--CC------CHHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHHH
Q 004513 386 QIGLVTQEP---ALL-SLSIRDNIAYGR--DA------TLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQK 452 (747)
Q Consensus 386 ~i~~v~Q~~---~lf-~~TireNi~~g~--~~------~~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQk 452 (747)
.|+||+|++ .+| ..|+.||+.++. .. +..+ ....+.+.++.+ |+.. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 366 479999998753 11 1111 112233444444 4432 34566779999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
||++||||++.+|+||||||||++||+.+.+.+.+.|+.+. +++|+|+|||+++.+.. ||++++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 57899999999998865 99999999999999998887
Q ss_pred Hh
Q 004513 531 LL 532 (747)
Q Consensus 531 L~ 532 (747)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
No 295
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=7.6e-39 Score=329.49 Aligned_cols=202 Identities=24% Similarity=0.315 Sum_probs=160.4
Q ss_pred EEEEeEEEEecCC---C-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEEC--Ce--ecCCCCH
Q 004513 309 IEFRNVYFSYLSR---P-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD--GE--NIKNLKL 380 (747)
Q Consensus 309 I~~~~v~f~y~~~---~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~--G~--~i~~~~~ 380 (747)
|+++|++++|+.. . ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999531 1 2469999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---h-hcceEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHH
Q 004513 381 EW---L-RSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQ 451 (747)
Q Consensus 381 ~~---l-r~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQ 451 (747)
.. + ++.++|++|++.+|. .|++|||.+.. ....++..+. +.+.++.+ |+.. .....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARAR-----ARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 3 457999999999885 79999997632 2222222111 11222322 2322 1234577899999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEE
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVM 517 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl 517 (747)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999998874 4789999999999886 59999876
No 296
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=310.06 Aligned_cols=193 Identities=26% Similarity=0.416 Sum_probs=170.3
Q ss_pred CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccH
Q 004513 322 PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSI 401 (747)
Q Consensus 322 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti 401 (747)
.+.++|+|+||++.+||.++|.||||||||||++.++-+..|++|++++.|.++++++++.+|++|+|+.|.|.||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCC
Q 004513 402 RDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (747)
Q Consensus 402 reNi~~g~-----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsa 476 (747)
.||+.|.- ..+.....+.++.+++ -++.+..+..+||||+|||+||+|-|.--|+||+|||||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 99998852 2333344444444432 24566778889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEeeCcch-hhcCCEEEEEeCceEeE
Q 004513 477 LDFEAERAVQEALDLLM--LGRSTIIIARRLSL-IRNADYIAVMDEGRLFE 524 (747)
Q Consensus 477 LD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~-i~~aD~I~vl~~G~ive 524 (747)
||+.+.+.|.+.|.++. ++..++.|||+-.. +++||+++-+..|++-+
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999999999987764 56789999999877 78899999999998744
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=9e-39 Score=368.19 Aligned_cols=215 Identities=24% Similarity=0.392 Sum_probs=172.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC--CCCCceEEEC---------------
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLD--------------- 371 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~--~p~~G~I~i~--------------- 371 (747)
|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 57899999995 346999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHhhcceEEEecc-Ccccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Q 004513 372 --------GENIK-------NLK---LEWLRSQIGLVTQE-PALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTF 428 (747)
Q Consensus 372 --------G~~i~-------~~~---~~~lr~~i~~v~Q~-~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~ 428 (747)
|.++. ... ...+|+.++||+|+ +.+|. .|++||+.++. ..+..+.++ .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 33221 111 13457789999998 57775 79999998752 222222111 11122
Q ss_pred HHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcc
Q 004513 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLS 506 (747)
Q Consensus 429 i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~ 506 (747)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 2222 44444455667899999999999999999999999999999999999999999998874 3789999999999
Q ss_pred hhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 507 LIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 507 ~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
.+.. ||+|++|++|++++.|+++++..
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9865 99999999999999999988765
No 298
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9e-39 Score=358.13 Aligned_cols=224 Identities=25% Similarity=0.400 Sum_probs=183.6
Q ss_pred cEEEEeEEEEecCCCC-CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC----CceEEECCeecCCCCHHH
Q 004513 308 NIEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT----LGEVLLDGENIKNLKLEW 382 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~----~G~I~i~G~~i~~~~~~~ 382 (747)
-++++|++..|..... .++++||||+|.+||++||||.|||||||++++|+|++++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975432 25899999999999999999999999999999999999988 899999999998888765
Q ss_pred h----hcceEEEeccCc-ccc--ccHHHHHh----cCCCCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCC
Q 004513 383 L----RSQIGLVTQEPA-LLS--LSIRDNIA----YGRDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (747)
Q Consensus 383 l----r~~i~~v~Q~~~-lf~--~TireNi~----~g~~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~L 447 (747)
+ .+.|+||+|+|+ .+| .||.+-|. .....+ .++..+.++.+++ |+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCccc
Confidence 4 267999999986 554 46655553 222222 2234444444443 332211 4456789
Q ss_pred CHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeE
Q 004513 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (747)
Q Consensus 448 SGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive 524 (747)
|||||||+.||+||+.+|++||+||||+|||+.+++.|.+.|+++. .|.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998875 57899999999999876 99999999999999
Q ss_pred ecChHHHhhcc-hHHHH
Q 004513 525 MGTHDELLATG-DLYAE 540 (747)
Q Consensus 525 ~Gt~~eL~~~~-~~~~~ 540 (747)
.|+.++++++. ..|..
T Consensus 236 ~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 236 TGPTEEILSNPQHPYTR 252 (539)
T ss_pred ecCHHHHHhccCCcccH
Confidence 99999999863 34543
No 299
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=315.06 Aligned_cols=212 Identities=24% Similarity=0.396 Sum_probs=183.2
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+.+|++++-. ++.+|+++||++++||.+||+||||||||||+++|+|++.|++|++.++|.++..+....+-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 67899998874 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcc-ccccHHHHHhcCC-CC----C--HHH--HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 389 LVTQEPAL-LSLSIRDNIAYGR-DA----T--LDQ--IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 389 ~v~Q~~~l-f~~TireNi~~g~-~~----~--~~~--i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
++||+..| |+-||+|-+.+|+ .. . +++ ..+++.++++.. | -+..-..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~----l-------a~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG----L-------AGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh----h-------hccchhhcCchHHHHHHHH
Confidence 99999887 8999999999986 22 1 222 344555554432 2 2334567999999999999
Q ss_pred ccccc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHH
Q 004513 459 RAVLL------NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 459 RAll~------~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~e 530 (747)
|.|.+ ++++|+||||||+||...+..+.+..+++. .+..|+.|-|+|+... .||||++|++||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99974 446999999999999999999999998875 5788999999999875 599999999999999999999
Q ss_pred Hhhc
Q 004513 531 LLAT 534 (747)
Q Consensus 531 L~~~ 534 (747)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8864
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.3e-38 Score=399.53 Aligned_cols=219 Identities=23% Similarity=0.388 Sum_probs=187.6
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
..|+++|++++|++ +++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 36999999999952 24579999999999999999999999999999999999999999999999999975 45667889
Q ss_pred eEEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
|||+||++.+|. .|++|||.++. ..+.++.++ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999995 79999998753 222222211 112223332 4555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
.+|+||||||||||||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999988789999999999999875 999999999999999999999765
No 301
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=309.83 Aligned_cols=213 Identities=23% Similarity=0.418 Sum_probs=181.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC--------
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-------- 379 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~-------- 379 (747)
.++++|+.++|+ ...+|++|||+-++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|..|+-..
T Consensus 6 ~l~v~dlHK~~G---~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcc---cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 588999999995 456999999999999999999999999999999999999999999999998874321
Q ss_pred -----HHHhhcceEEEeccCcccc-ccHHHHHhcCC----CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCC
Q 004513 380 -----LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGL 445 (747)
Q Consensus 380 -----~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~ 445 (747)
.+.+|.+.++|+|...|++ .||.||+.-+- ..++.+ .+..+.++++.+. ...-..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek-----------~~~YP~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK-----------ADAYPA 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-----------hhcCcc
Confidence 4568999999999999996 89999986431 223322 2233344444433 334456
Q ss_pred CCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 446 ~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
.|||||+||++|||||..+|+++++|||||||||+-.-.+.+.++++. .|+|.++|||.+.++++ +.+|+.|++|+|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 799999999999999999999999999999999998888888888775 68999999999999988 8999999999999
Q ss_pred EecChHHHhhc
Q 004513 524 EMGTHDELLAT 534 (747)
Q Consensus 524 e~Gt~~eL~~~ 534 (747)
|+|+|+++..+
T Consensus 232 E~G~P~qvf~n 242 (256)
T COG4598 232 EEGPPEQVFGN 242 (256)
T ss_pred ccCChHHHhcC
Confidence 99999999875
No 302
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.4e-39 Score=375.43 Aligned_cols=203 Identities=24% Similarity=0.361 Sum_probs=174.1
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC---CceEEECCeecCCCCHHHhhcceEEEeccCcccc-
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~---~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~- 398 (747)
++++|+|+|++|++||++||+||||||||||+++|.|..+|. +|+|.+||.++. ...+|+.+|||+|++++++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 567999999999999999999999999999999999999885 799999999875 3567889999999999995
Q ss_pred ccHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHHh--ccccccccccCC--CCCCCHHHHHHHHHhcccccCCCEE
Q 004513 399 LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISS--LEKGYETQVGRA--GLALTEEQKIKLSIARAVLLNPSIL 468 (747)
Q Consensus 399 ~TireNi~~g~~------~~~~~i~~a~~~~~l~~~i~~--lp~G~~t~vge~--g~~LSGGQkQRialARAll~~p~il 468 (747)
.||+|||.|+.. .+.++ +...+++.++. |++..||.+|+. +..||||||||++|||||+.+|+||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 799999998641 12221 12223334443 455789999984 5889999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcc-h-hhcCCEEEEEeCceEeEecChHHHhh
Q 004513 469 LLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLS-L-IRNADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 469 lLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~-~-i~~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|||||||||+.+...+.+.++++. +++|+|+++|+++ . .+.||+|++|++|+++++|+++++.+
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999999999999998875 4899999999996 3 46799999999999999999999863
No 303
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.5e-38 Score=371.98 Aligned_cols=202 Identities=27% Similarity=0.405 Sum_probs=170.4
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC--CceEEECCeecCCCCHHHhhcceEEEeccCcccc-c
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT--LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-L 399 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~--~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 399 (747)
++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||.++.. ..++++|||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999985 8999999998742 34567999999999995 7
Q ss_pred cHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHh--ccccccccccCC-CCCCCHHHHHHHHHhcccccCCCEEEE
Q 004513 400 SIRDNIAYGR------DATLDQIEEAAKIAHAHTFISS--LEKGYETQVGRA-GLALTEEQKIKLSIARAVLLNPSILLL 470 (747)
Q Consensus 400 TireNi~~g~------~~~~~~i~~a~~~~~l~~~i~~--lp~G~~t~vge~-g~~LSGGQkQRialARAll~~p~illL 470 (747)
||+||+.++. ..++++..+.+ ++.++. |++..+|.+|++ ...||||||||++|||||+++|+||+|
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 9999998752 12333322211 222332 344568888864 678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcch-h-hcCCEEEEEeCceEeEecChHHHhh
Q 004513 471 DEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL-I-RNADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 471 DEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~-i-~~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
||||+|||+.++..+.+.|+++. +++|+|+++|+++. + +.||+|++|++|++++.|+++++..
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999998875 58999999999984 4 5699999999999999999998865
No 304
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.2e-38 Score=326.48 Aligned_cols=186 Identities=24% Similarity=0.391 Sum_probs=156.5
Q ss_pred EEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCcc---ccccHHHHHhcC
Q 004513 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL---LSLSIRDNIAYG 408 (747)
Q Consensus 332 l~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~l---f~~TireNi~~g 408 (747)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 246789999999976 458999999875
Q ss_pred CC--------CC---HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCC
Q 004513 409 RD--------AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (747)
Q Consensus 409 ~~--------~~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaL 477 (747)
.. .. ++++.++++.+++ +.........||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGL-----------TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCC-----------chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 11 1234444444443 33334455679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhc
Q 004513 478 DFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 478 D~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|+.+++.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+.
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998775 5789999999999876 49999999 8999999999998664
No 305
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.2e-38 Score=318.58 Aligned_cols=188 Identities=18% Similarity=0.311 Sum_probs=158.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +..++ ++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 2 l~~~~l~~~~~---~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIE---QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEEC---CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 68999999995 23444 599999999999999999999999999999999999999999999886543 34699
Q ss_pred EEeccCcc-ccccHHHHHhcCCC-C-CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC
Q 004513 389 LVTQEPAL-LSLSIRDNIAYGRD-A-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (747)
Q Consensus 389 ~v~Q~~~l-f~~TireNi~~g~~-~-~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p 465 (747)
|++|++.+ |..|++||+.++.. . .++++.++++.+++. ......+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLH-----------DLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCH-----------hhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999765 57999999987542 1 234455555555443 3344567789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhcCCEEE
Q 004513 466 SILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRNADYIA 515 (747)
Q Consensus 466 ~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~aD~I~ 515 (747)
++|||||||++||+.+++.+.+.++.. .+++|+|++||+++.++.||.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999998753 46799999999999999999764
No 306
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.2e-38 Score=316.97 Aligned_cols=174 Identities=29% Similarity=0.463 Sum_probs=144.8
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC--CCHHHhhcceEEEeccC--cccc
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQIGLVTQEP--ALLS 398 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~--~~~~~lr~~i~~v~Q~~--~lf~ 398 (747)
+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++ .+|.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 3569999999999999999999999999999999999999999999999999852 23446678899999998 4778
Q ss_pred ccHHHHHhcCC---CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Q 004513 399 LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471 (747)
Q Consensus 399 ~TireNi~~g~---~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLD 471 (747)
.|++||+.++. ..+.+ ++.++++..+ ++........+||||||||++|||||+++|+++|||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVG-----------ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 89999998753 22322 2333333333 333344456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcch
Q 004513 472 EVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL 507 (747)
Q Consensus 472 EpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~ 507 (747)
|||++||+.+++.+.+.|+++. +++|+|++||+++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999998774 47899999999875
No 307
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.2e-38 Score=368.85 Aligned_cols=218 Identities=28% Similarity=0.420 Sum_probs=186.8
Q ss_pred cEEEEeEEEEecCCC-CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHh---
Q 004513 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL--- 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~l--- 383 (747)
.|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998876653
Q ss_pred -hcceEEEeccCcccc-ccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 384 -RSQIGLVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 384 -r~~i~~v~Q~~~lf~-~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
|+.++|++|++.+|. .|+.||+.++.. .+.++. ...+.+.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999996 699999987431 111111 11223444444 666667777789999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHh
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|||+++|++|||||||++||+.+++.+.+.++++. +++|+|++||+++.++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 579999999999999889999999999999999999875
No 308
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-38 Score=361.99 Aligned_cols=211 Identities=22% Similarity=0.307 Sum_probs=173.5
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH-HHhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-~~lr~~ 386 (747)
.|+++|+++.|. .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999998762 38999999999999999999999999999999999999999999999999866543 356778
Q ss_pred eEEEeccC---cccc-ccHHHHHhcCCCC------------CHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCH
Q 004513 387 IGLVTQEP---ALLS-LSIRDNIAYGRDA------------TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTE 449 (747)
Q Consensus 387 i~~v~Q~~---~lf~-~TireNi~~g~~~------------~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSG 449 (747)
|+||+|++ .+|. .|++||+.++... ...+ ....+.+.++.+ |+. .........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 5774 7999999875321 1111 111223344443 443 234566678999
Q ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 450 GQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998763 57899999999998764 99999999999998886
Q ss_pred hHH
Q 004513 528 HDE 530 (747)
Q Consensus 528 ~~e 530 (747)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 633
No 309
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8.6e-38 Score=322.37 Aligned_cols=196 Identities=26% Similarity=0.330 Sum_probs=154.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
+.++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVG---EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 66788888884 35799999999999999999999999999999999999999999999999876321
Q ss_pred EEeccCcc-ccccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 389 LVTQEPAL-LSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 389 ~v~Q~~~l-f~~TireNi~~g~~---~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
.+...+ ...|++||+.++.. .+.++..+.+ .+.++.+ |++.........||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKI-----DEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111222 35799999987531 2222222211 1111111 333333445568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEec
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~G 526 (747)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999998764 4689999999999886 49999999999998765
No 310
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.7e-38 Score=359.90 Aligned_cols=221 Identities=21% Similarity=0.302 Sum_probs=174.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-CCceEEECCeecCCCCH-HHhhc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIKNLKL-EWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-~~G~I~i~G~~i~~~~~-~~lr~ 385 (747)
-|+++|++++|+..++..+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999422234699999999999999999999999999999999999996 89999999999865433 45688
Q ss_pred ceEEEeccC---cccc-ccHHHHHhcCCC--CCH-HHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEP---ALLS-LSIRDNIAYGRD--ATL-DQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~---~lf~-~TireNi~~g~~--~~~-~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQkQRial 457 (747)
+|+||+|++ .+|. .|++||+.++.. ... ..+........+.+.++.+ |+.. ........||||||||++|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCccccCCHHHHHHHHH
Confidence 899999996 4664 799999987531 100 0000000111223334443 3322 2345567899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
||||+.+|++|||||||++||+.+.+.+.+.|+.+. .++|+|++||+++.+.. ||+|++|++|+++..++.++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999988764 57899999999999865 99999999999998776543
No 311
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=325.32 Aligned_cols=193 Identities=27% Similarity=0.479 Sum_probs=166.1
Q ss_pred cEEEEeEEEEecCCCC------CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH
Q 004513 308 NIEFRNVYFSYLSRPE------IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~ 381 (747)
-++++|+++.|+.... ..+++||||+|++||++||||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 4789999999975321 46899999999999999999999999999999999999999999999999887665
Q ss_pred HhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHH-HHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~-~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
.....+++.+.++.+++.+ ++. .....|||||||||+||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~-----------ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLY-----------RYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhh-----------cCCcccCchhhhhHHHHHH
Confidence 1222456778888887643 333 3345799999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhcc-h
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG-D 536 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~~-~ 536 (747)
|.-+|+++++|||||+||...+..|.+.+.++. .+-|.++|||+++.++. ||||+||..|+|||.|+.+++.... -
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999987764 47899999999999987 9999999999999999999998853 3
Q ss_pred HHHH
Q 004513 537 LYAE 540 (747)
Q Consensus 537 ~~~~ 540 (747)
.|.+
T Consensus 204 pYTk 207 (268)
T COG4608 204 PYTK 207 (268)
T ss_pred HHHH
Confidence 4543
No 312
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=346.86 Aligned_cols=208 Identities=31% Similarity=0.461 Sum_probs=177.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
-++++|++++|+ ..++|+||||++.+||++|++|.||||||||+|.|.|.|+|++|+|.+||..+.-.++.. ...-
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 488999999995 568999999999999999999999999999999999999999999999999998777664 5567
Q ss_pred eEEEeccCccc-cccHHHHHhcCCCCCH-------HHHHHHHHHHHHHHHHHhcc--ccccccccCCCCCCCHHHHHHHH
Q 004513 387 IGLVTQEPALL-SLSIRDNIAYGRDATL-------DQIEEAAKIAHAHTFISSLE--KGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 387 i~~v~Q~~~lf-~~TireNi~~g~~~~~-------~~i~~a~~~~~l~~~i~~lp--~G~~t~vge~g~~LSGGQkQRia 456 (747)
|+.|.||..|+ +.||.|||.+|+.... .+..+.++ ..+..+- ...++.| .+||+||||.|+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~~~~~v----~~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDIDPDTLV----GDLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCChhhhh----hhCCHHHHHHHH
Confidence 99999999999 5899999999984322 33322222 2233331 1244444 579999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
||||+..+++|+|||||||+|+....+.+.+.++++. +|.++|+|||||+++.. ||||.||.||+.+..++
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999998888999998875 78999999999999865 99999999999998776
No 313
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.4e-38 Score=302.13 Aligned_cols=207 Identities=27% Similarity=0.378 Sum_probs=174.3
Q ss_pred cEEEEeEEEEecCC-CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH---h
Q 004513 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~---l 383 (747)
.|+++++++.-+.. ....+|++|+|.|++||.+|||||||||||||+.+|.|+-+|++|+|++.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888877532 3457899999999999999999999999999999999999999999999999999988553 4
Q ss_pred h-cceEEEeccCccc-cccHHHHHhcCC----C-C--CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 384 R-SQIGLVTQEPALL-SLSIRDNIAYGR----D-A--TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 384 r-~~i~~v~Q~~~lf-~~TireNi~~g~----~-~--~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
| +++|+|+|...|. +.|-.||+.... + . ..+...+.+++++ +...+..-..+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vG-----------Lg~Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVG-----------LGKRLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhC-----------cccccccCccccCchHHHH
Confidence 4 6799999999987 699999987642 1 1 1222344555554 4444555566899999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEeeCcchhhcCCEEEEEeCceEeEe
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~--~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~ 525 (747)
+|||||+...|+||+-||||.+||.+|.+.|.+.+-.+ ..+.|.|+|||+...+..|||++-|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999999998877544 357899999999999999999999999999863
No 314
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-37 Score=346.69 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=170.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.++++|++|+|+.+...++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 48899999999654335799999999999999999999999999999999999999999999999641
Q ss_pred EEEeccCccc-cccHHHHHhcCC---CCCHHHHH----HHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPALL-SLSIRDNIAYGR---DATLDQIE----EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~lf-~~TireNi~~g~---~~~~~~i~----~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
++.+.+.++ ..|++||+.++. ..+.++.. ++++.++ +..........||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lg-----------L~~~ld~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFAD-----------IGKFIYQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCCcccCCHHHHHHHHHHH
Confidence 223344444 369999998743 23333332 2333333 333344556789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhcchH
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDL 537 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~~~~ 537 (747)
||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998764 47899999999999865 999999999999999999999875444
Q ss_pred HHH
Q 004513 538 YAE 540 (747)
Q Consensus 538 ~~~ 540 (747)
|..
T Consensus 237 ~~~ 239 (549)
T PRK13545 237 FLK 239 (549)
T ss_pred HHH
Confidence 443
No 315
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=329.34 Aligned_cols=222 Identities=27% Similarity=0.420 Sum_probs=187.7
Q ss_pred cEEEEeEEEEecCCCC--------CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC
Q 004513 308 NIEFRNVYFSYLSRPE--------IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~--------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~ 379 (747)
-++.+||...|+-+++ ..++++|||++++||++||||+||||||||-.+|+|++++. |+|.++|.++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 5889999999874321 35799999999999999999999999999999999999887 99999999999988
Q ss_pred HHH---hhcceEEEeccCc--cc-cccHHHHHhcCC-----CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCC
Q 004513 380 LEW---LRSQIGLVTQEPA--LL-SLSIRDNIAYGR-----DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444 (747)
Q Consensus 380 ~~~---lr~~i~~v~Q~~~--lf-~~TireNi~~g~-----~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g 444 (747)
.+. +|+++-+|+|||+ |- ..||.+-|.=|. ..+ ++++.+|++.++++... ...-.
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----------r~RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----------RNRYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----------hhcCC
Confidence 765 6899999999997 33 378888876552 122 35666777777664332 23445
Q ss_pred CCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCce
Q 004513 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (747)
Q Consensus 445 ~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ 521 (747)
..+|||||||||||||++-+|++++|||||||||-..+..|.+.++.+. .+-+-++|+|+|..++. ||+|+||++|+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 6799999999999999999999999999999999999999999998774 46789999999999986 99999999999
Q ss_pred EeEecChHHHhhc-chHHHH
Q 004513 522 LFEMGTHDELLAT-GDLYAE 540 (747)
Q Consensus 522 ive~Gt~~eL~~~-~~~~~~ 540 (747)
|||+|+.++++.+ ...|.+
T Consensus 505 iVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHH
Confidence 9999999999986 345653
No 316
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=356.77 Aligned_cols=209 Identities=22% Similarity=0.340 Sum_probs=173.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH-HHhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-~~lr~~ 386 (747)
.|+++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999974 36999999999999999999999999999999999999999999999999877654 346778
Q ss_pred eEEEeccC---ccc-cccHHHHHhcCCC---------CCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHH
Q 004513 387 IGLVTQEP---ALL-SLSIRDNIAYGRD---------ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (747)
Q Consensus 387 i~~v~Q~~---~lf-~~TireNi~~g~~---------~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQk 452 (747)
||||+|++ .+| ..|++||+.++.. .+..+. ...+.+.+..+ |+. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 355 4799999987521 111111 11223344443 442 345667788999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|+..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998874 57899999999998865 99999999999999998876
Q ss_pred H
Q 004513 531 L 531 (747)
Q Consensus 531 L 531 (747)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=357.65 Aligned_cols=207 Identities=23% Similarity=0.387 Sum_probs=168.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG---AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeC---CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 78999999995 346999999999999999999999999999999999999999999999982 3699
Q ss_pred EEeccCcccc-ccHHHHHhcCCC-C-------------C---HH---HHHHHH----------HHHHHHHHHHhcccccc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGRD-A-------------T---LD---QIEEAA----------KIAHAHTFISSLEKGYE 437 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~~-~-------------~---~~---~i~~a~----------~~~~l~~~i~~lp~G~~ 437 (747)
|++|++.+|. .|++||+.++.. . . .+ .+.+.. ....+.+.+..+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998875 799999987531 0 0 00 000000 011223334443 443
Q ss_pred ccc-cCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEE
Q 004513 438 TQV-GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIA 515 (747)
Q Consensus 438 t~v-ge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~ 515 (747)
... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 235678999999999999999999999999999999999999999999875 47899999999999865 99999
Q ss_pred EEeCceE-eEecChHHHhh
Q 004513 516 VMDEGRL-FEMGTHDELLA 533 (747)
Q Consensus 516 vl~~G~i-ve~Gt~~eL~~ 533 (747)
+|++|++ ++.|++++.+.
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 48999998864
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=356.03 Aligned_cols=211 Identities=24% Similarity=0.308 Sum_probs=173.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC-HHHhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~-~~~lr~~ 386 (747)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ....|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999732 3899999999999999999999999999999999999999999999999886543 3456778
Q ss_pred eEEEeccCc---cc-cccHHHHHhcCCC-C--------CHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHH
Q 004513 387 IGLVTQEPA---LL-SLSIRDNIAYGRD-A--------TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (747)
Q Consensus 387 i~~v~Q~~~---lf-~~TireNi~~g~~-~--------~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQk 452 (747)
|+|++|++. +| ..|+.||+.++.. . ...+- ...+.+.+..+ |+. ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 66 4899999987531 1 11110 11223344443 342 234556679999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
||++||||++.+|++|||||||++||+.+.+.+.++|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998764 47899999999999865 99999999999999999877
Q ss_pred Hh
Q 004513 531 LL 532 (747)
Q Consensus 531 L~ 532 (747)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
No 319
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-38 Score=307.08 Aligned_cols=212 Identities=25% Similarity=0.427 Sum_probs=186.8
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++||+++|+ .+.+|+++|++|++|++++|+||||+|||||+.++.|+.++++|+|.++|.++.+.+.+.|.+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 78999999995 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCccc-cccHHHHHhcCC-CCCH--------HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR-DATL--------DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~-~~~~--------~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA 458 (747)
+.-|+..+- ..||||-+.||+ +|+. .-+.+|++-.+|.+ |.+. .-..||||||||.-||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~----l~dr-------yLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED----LSDR-------YLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc----hHHH-------hHHhcccchhhhhhhh
Confidence 999999987 589999999998 5542 22445555444322 2222 2346999999999999
Q ss_pred cccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 459 RAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
..+.+|.+.++||||..+||-.....+++.++++. -+||+++|-|+...+.. +|+|+-|++|+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999988774 48999999999999975 999999999999999999999874
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.6e-37 Score=356.61 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=168.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-|+++|++++|+. ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999951 357999999999999999999999999999999999999999999999751 369
Q ss_pred EEEeccCcccc-ccHHHHHhcCC-CC----------------CH----------HHHHHHHHH-------HHHHHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGR-DA----------------TL----------DQIEEAAKI-------AHAHTFISSL 432 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~-~~----------------~~----------~~i~~a~~~-------~~l~~~i~~l 432 (747)
|||+|+|.+++ .|++||+.++. .+ .. .++.+.++. ..+...+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 99999999986 69999998752 10 00 001111111 1122223332
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-C
Q 004513 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-A 511 (747)
Q Consensus 433 p~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-a 511 (747)
|++ .......+|||||||||+||||++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 332 2355667899999999999999999999999999999999999999999998863 599999999999876 9
Q ss_pred CEEEEEeCceEe-EecChHHHhh
Q 004513 512 DYIAVMDEGRLF-EMGTHDELLA 533 (747)
Q Consensus 512 D~I~vl~~G~iv-e~Gt~~eL~~ 533 (747)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899998754
No 321
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-37 Score=302.49 Aligned_cols=204 Identities=28% Similarity=0.446 Sum_probs=169.6
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
+.+++++.+|+..+ .++|+|+|++|.+||.++++||||||||||++++.|+.+|..|+|.+||..|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56789999997543 569999999999999999999999999999999999999999999999999887654 469
Q ss_pred EEeccCcccc-ccHHHHHhcCC---CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 389 ~v~Q~~~lf~-~TireNi~~g~---~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
+|+|++.|++ .|+.||+.||. ...+.+ ..+.+..+ |++-.-......||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~V-----------gL~~~~~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV-----------GLEGAEHKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-----------CcccccccceEeecchHHHHHHHHHH
Confidence 9999999998 89999999985 333322 12222233 33222234556899999999999999
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEeeCcchhh-cCCEEEEEe--CceEeEecChH
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIR-NADYIAVMD--EGRLFEMGTHD 529 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~--~~~~t~I~itH~l~~i~-~aD~I~vl~--~G~ive~Gt~~ 529 (747)
|.-+|+.|+||||++|||+-+++.+|+.+-++ ..++-+++|||.++++- -|++++||. .|+|++.=+++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999999999987554 35899999999998875 599999997 57999865543
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3e-37 Score=357.88 Aligned_cols=208 Identities=23% Similarity=0.310 Sum_probs=170.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-|+++|++++|+. ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4889999999951 34699999999999999999999999999999999999999999999986 1369
Q ss_pred EEEeccCcccc-ccHHHHHhcCCC------------------CCH---------HHHHHHHHHHHH-------HHHHHhc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRD------------------ATL---------DQIEEAAKIAHA-------HTFISSL 432 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~------------------~~~---------~~i~~a~~~~~l-------~~~i~~l 432 (747)
|||+|+|.+|. .|++|||.++.. ..+ .++.++++.+++ .+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999985 799999987521 001 123333433332 2223332
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-C
Q 004513 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-A 511 (747)
Q Consensus 433 p~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-a 511 (747)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 134567799999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEeCceEe-EecChHHHhh
Q 004513 512 DYIAVMDEGRLF-EMGTHDELLA 533 (747)
Q Consensus 512 D~I~vl~~G~iv-e~Gt~~eL~~ 533 (747)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999975 7899998765
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-37 Score=354.06 Aligned_cols=201 Identities=19% Similarity=0.320 Sum_probs=170.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 599999999995 346999999999999999999999999999999999999999999999982 479
Q ss_pred EEEeccCc--cc-cccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 388 GLVTQEPA--LL-SLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 388 ~~v~Q~~~--lf-~~TireNi~~g~--~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
||++|++. ++ ..|++||+.+.. ...++++.++++..++. .........+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999974 44 379999987532 22234455555554321 12334566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEe-EecChHHHhhc
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHDELLAT 534 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv-e~Gt~~eL~~~ 534 (747)
.+|+||||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++++..
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999886 4699999999999875 9999999999998 88999887654
No 324
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.5e-37 Score=333.97 Aligned_cols=180 Identities=29% Similarity=0.517 Sum_probs=153.4
Q ss_pred EeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCcccc-ccHHHHHhcCC---CCCHHH--
Q 004513 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQ-- 415 (747)
Q Consensus 342 ivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~---~~~~~~-- 415 (747)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.|+||+|++.+|. .|++||+.|+. ..+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977654 3678999999999996 69999999864 122222
Q ss_pred --HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 004513 416 --IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493 (747)
Q Consensus 416 --i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~ 493 (747)
+.++++.. |++........+||||||||++|||||+++|++|||||||++||+.++..+.+.|+++.
T Consensus 79 ~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLV-----------QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHc-----------CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 22333333 44444556677899999999999999999999999999999999999999999998764
Q ss_pred --CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 494 --LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 494 --~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
.++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 37899999999998764 999999999999999999999765
No 325
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-37 Score=293.28 Aligned_cols=212 Identities=24% Similarity=0.422 Sum_probs=178.5
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCe--ecCCCC----HH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE--NIKNLK----LE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~--~i~~~~----~~ 381 (747)
.|.++|++|.|+. ..+|-||+|+-+.||.+.++||||+|||||++.|.=+--|.+|+..|.|. |.++.. ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999953 46999999999999999999999999999999999999999999999875 343332 44
Q ss_pred HhhcceEEEeccCcccc-ccHHHHHhcCC----CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~TireNi~~g~----~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
.+|+.+|.|+|+..|++ .||.||+.-.- ..+++ +..+.++...+.++-+.+| ..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 68999999999999996 89999986321 22332 3334455555555554444 46999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
||+||||||+.+|++|++||||+||||+-...+.+.|+++. .|-|-++|||..+.+++ |.+|+.|++|+|+|+|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999999998885 58899999999999976 99999999999999999876
Q ss_pred Hhh
Q 004513 531 LLA 533 (747)
Q Consensus 531 L~~ 533 (747)
.-.
T Consensus 228 ft~ 230 (242)
T COG4161 228 FTE 230 (242)
T ss_pred ccC
Confidence 544
No 326
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-36 Score=381.69 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=180.7
Q ss_pred cEEEEeEEEEecCC-CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC---CCCceEEECCeecCCCCHHHh
Q 004513 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~---p~~G~I~i~G~~i~~~~~~~l 383 (747)
.++++||+++|+.+ .++++|+|||++|++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47899999999532 24579999999999999999999999999999999999998 78899999999885 247
Q ss_pred hcceEEEeccCccc-cccHHHHHhcCC------CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 384 RSQIGLVTQEPALL-SLSIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 384 r~~i~~v~Q~~~lf-~~TireNi~~g~------~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
|+.+|||+|++.++ ..||||||.|+. ..++++ +.++++..+ |.+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 88999999997655 689999999752 123322 334444333 334578999999999999999
Q ss_pred HHHHHhcccccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchh--hcCCEEEEEeCc-eEeEecC
Q 004513 453 IKLSIARAVLLNPS-ILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLI--RNADYIAVMDEG-RLFEMGT 527 (747)
Q Consensus 453 QRialARAll~~p~-illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i--~~aD~I~vl~~G-~ive~Gt 527 (747)
||++|||||+.+|+ ||+|||||||||+.+...+.+.|+++ .+|+|+|+++|+++.. ..+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999887 4689999999999863 579999999997 9999999
Q ss_pred hHHH
Q 004513 528 HDEL 531 (747)
Q Consensus 528 ~~eL 531 (747)
..+.
T Consensus 988 ~~~~ 991 (1394)
T TIGR00956 988 LGEN 991 (1394)
T ss_pred cccc
Confidence 7543
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-36 Score=318.04 Aligned_cols=192 Identities=20% Similarity=0.270 Sum_probs=156.4
Q ss_pred EEecCCCCCCceeeeeEEec-----CCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEE
Q 004513 316 FSYLSRPEIPILSGFYLTVP-----AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390 (747)
Q Consensus 316 f~y~~~~~~~vL~~isl~i~-----~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v 390 (747)
|+|++ ....+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 56763 2357888888887 69999999999999999999999999999999999993 69999
Q ss_pred eccCcc-ccccHHHHHhcCCC-C-C-HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 391 TQEPAL-LSLSIRDNIAYGRD-A-T-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 391 ~Q~~~l-f~~TireNi~~g~~-~-~-~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
+|++.+ +..|++||+.+... . . .....++++.. |++........+||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL-----------QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 57999999975431 1 1 12233334333 34444455667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEe--EecChHHHh
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF--EMGTHDELL 532 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv--e~Gt~~eL~ 532 (747)
+|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999998874 37999999999999875 9999999775443 556666665
No 328
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.1e-37 Score=350.69 Aligned_cols=211 Identities=18% Similarity=0.258 Sum_probs=173.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~~ 386 (747)
.|+++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999983 1599999999999999999999999999999999999999999999999998766554 4668
Q ss_pred eEEEeccC---cccc-ccHHHHHhcCC----C--CCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHH
Q 004513 387 IGLVTQEP---ALLS-LSIRDNIAYGR----D--ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 387 i~~v~Q~~---~lf~-~TireNi~~g~----~--~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRi 455 (747)
|+||||++ .+|. .|+.+|+.... . ....+. ...+.+.+..+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 3664 69999986421 1 011111 11223344444 443 345666788999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhh
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999999999998764 47899999999999875 99999999999999998887653
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2e-36 Score=310.05 Aligned_cols=191 Identities=18% Similarity=0.238 Sum_probs=154.7
Q ss_pred ceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE-ECCeecCCCCHHHhhcceEEEeccCcccc-ccHHH
Q 004513 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-LDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRD 403 (747)
Q Consensus 326 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~-i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Tire 403 (747)
+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+ .|++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777432 1345677886 69999
Q ss_pred HHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHH
Q 004513 404 NIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (747)
Q Consensus 404 Ni~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~ 480 (747)
||.+.. ..+.+++.+.+. ....++..+++. ...||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDR----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhch----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998743 233333332221 122334444444 3569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcchHHH
Q 004513 481 AERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATGDLYA 539 (747)
Q Consensus 481 ~~~~i~~~i~~~~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~ 539 (747)
+++.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+.+++.+..+.|.
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 198 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQYQ 198 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHHH
Confidence 99999998865556789999999999986 599999999999999999998875544443
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.2e-36 Score=291.25 Aligned_cols=143 Identities=33% Similarity=0.530 Sum_probs=134.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 468999999953 36999999999999999999999999999999999999999999999994 3799
Q ss_pred EEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEE
Q 004513 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~il 468 (747)
|++| ||+||+||++||||++++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCce
Q 004513 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (747)
Q Consensus 469 lLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ 521 (747)
||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++||
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999876 5799999999999865 99999999986
No 331
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.8e-37 Score=321.65 Aligned_cols=200 Identities=18% Similarity=0.248 Sum_probs=160.2
Q ss_pred EeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE-----------ECCeecCCCCH
Q 004513 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-----------LDGENIKNLKL 380 (747)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------i~G~~i~~~~~ 380 (747)
.||+|+|+. ..++|+|+|+ +++||++||+||||||||||+++|+|+++|++|+|. ++|.++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 478899952 2368999995 999999999999999999999999999999999996 88988876543
Q ss_pred HHhhc--ceEEEeccCccccccHHHHHhcCC-CC-CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHH
Q 004513 381 EWLRS--QIGLVTQEPALLSLSIRDNIAYGR-DA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (747)
Q Consensus 381 ~~lr~--~i~~v~Q~~~lf~~TireNi~~g~-~~-~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRia 456 (747)
+..|. .++|++|++.++..++.+|+.+.- .. .++++.++++.. |++........+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQL-----------ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHH
Confidence 33332 478999988877666666665421 11 122333333333 4555566777899999999999
Q ss_pred HhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++| +|++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999998775 47999999999999875 9999999 56676544
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.5e-36 Score=347.41 Aligned_cols=205 Identities=23% Similarity=0.299 Sum_probs=164.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-CCceEEECCeecCC-CCHHHhhc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIKN-LKLEWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-~~G~I~i~G~~i~~-~~~~~lr~ 385 (747)
.|+++|++++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. ......|+
T Consensus 260 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYN---DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEEC---CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 599999999995 24699999999999999999999999999999999999876 69999999987632 23344677
Q ss_pred ceEEEeccCcccc---ccHHHHHhcCC-C-------CCH---HHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHH
Q 004513 386 QIGLVTQEPALLS---LSIRDNIAYGR-D-------ATL---DQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEE 450 (747)
Q Consensus 386 ~i~~v~Q~~~lf~---~TireNi~~g~-~-------~~~---~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGG 450 (747)
+|+|++|++.++. .|+++++.++. . ... +++.++++.+ |+.. .......+||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL-----------GIDKRTADAPFHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCchhhccCchhhCCHH
Confidence 8999999987642 47777765431 0 111 1223333332 4443 345566789999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC-CeEEEEeeCcchhhc--CCEEEEEeCceEeEec
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LG-RSTIIIARRLSLIRN--ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~-~t~I~itH~l~~i~~--aD~I~vl~~G~ive~G 526 (747)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++ .|+|+|||+++.+.. ||+|++|++|+|++.-
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999998875 34 469999999999863 8999999999998743
No 333
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-37 Score=312.01 Aligned_cols=197 Identities=25% Similarity=0.430 Sum_probs=170.5
Q ss_pred eeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC----CCHHHhhcceEEEeccCcccc-ccHH
Q 004513 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEWLRSQIGLVTQEPALLS-LSIR 402 (747)
Q Consensus 328 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~----~~~~~lr~~i~~v~Q~~~lf~-~Tir 402 (747)
=+++|+.+.-.++||-|+||||||||+|+|.|+.+|++|.|.+||.-+.+ +...--+++||||+||.-||+ .|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 36889998877999999999999999999999999999999999976644 334445778999999999995 8999
Q ss_pred HHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHH
Q 004513 403 DNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (747)
Q Consensus 403 eNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~ 481 (747)
-|++||. ..+..++.+++...++...+...| .+||||||||+||+|||+.+|++|+||||.|+||-..
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 9999998 444667777777776665555554 5699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHHHhhcc
Q 004513 482 ERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (747)
Q Consensus 482 ~~~i~~~i~~~~~--~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~eL~~~~ 535 (747)
.+++.-.++++.+ +--++.|||.++++. .||+|++|++||+...|..+|.++..
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9999888887754 456889999998875 59999999999999999999988753
No 334
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.5e-36 Score=328.38 Aligned_cols=212 Identities=24% Similarity=0.373 Sum_probs=176.5
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH-Hhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE-WLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~-~lr~~ 386 (747)
.+++++++++|+ +..+++||||+|++||+.||+|.||+|||||+++|.|+|+|++|+|.+||+.++=-++. ..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999996 56789999999999999999999999999999999999999999999999999765554 67888
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCCCCHH---HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRDATLD---QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~~~~~---~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
||+|.|++.|++ .||.|||.+|.+...- ...++-+. +.+..+.+ |++-...+....||-||||||.|-+|||
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~--i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR--IKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHH--HHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHh
Confidence 999999999995 8999999999743210 11111111 11122222 4444445566689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
++|++||||||||-|=|...+.+.+.++.+. .|+|+|+|||+|.++.. ||||-||.+||++..-
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 9999999999999999999899989998774 68999999999999876 9999999999986543
No 335
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=305.38 Aligned_cols=213 Identities=22% Similarity=0.397 Sum_probs=185.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.+++++|+++|+ +..+++||||.+++|++.|++|||||||||++++|+|+++|++|+|.++|.+++. ..+++|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 478999999994 5679999999999999999999999999999999999999999999999988865 345689
Q ss_pred EEEeccCcccc-ccHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
||.|.+--|+. .||.|-|.|.. .++..++.+- +..+++.+.-. -.-..+...||-|..|+|.+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhc
Confidence 99999999995 89999999753 5566655433 34456655322 22345677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+|+++|||||+|||||.+.+.+.+.|.++. .|.|+|+.||+|+.++. ||++++|++|+.|-+|+.+++.+.
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999887764 68999999999999975 999999999999999999998764
No 336
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-36 Score=341.45 Aligned_cols=211 Identities=21% Similarity=0.300 Sum_probs=170.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH-Hhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE-WLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~-~lr~~ 386 (747)
.|+++|++++| .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999875 2489999999999999999999999999999999999999999999999999876643 45778
Q ss_pred eEEEeccC---cccc-ccHHHHHhcC-----CC----CCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHH
Q 004513 387 IGLVTQEP---ALLS-LSIRDNIAYG-----RD----ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (747)
Q Consensus 387 i~~v~Q~~---~lf~-~TireNi~~g-----~~----~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQk 452 (747)
++|++|++ .+|. .|+.+|+.+. .. .+..+.. ..+.+.+..+ |+. -.......+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 99999996 3564 6777773221 11 1111111 1223334444 332 124666789999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~e 530 (747)
||++||||++.+|+||||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999997764 58999999999998865 99999999999998876643
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.5e-35 Score=339.03 Aligned_cols=199 Identities=20% Similarity=0.313 Sum_probs=164.1
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 599999999995 34699999999999999999999999999999999999999999999955 21 59
Q ss_pred EEEeccCc-cc-cccHHHHHhcCCC---CC--HHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEPA-LL-SLSIRDNIAYGRD---AT--LDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~~-lf-~~TireNi~~g~~---~~--~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQkQRialAR 459 (747)
||++|++. ++ ..|++||+.++.. .. +.+..+ .+..+ |+.. .......+||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA---------YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999973 66 4799999988642 11 111222 23333 3432 235566789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeC-ceEe-EecChHHHhh
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDE-GRLF-EMGTHDELLA 533 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~-G~iv-e~Gt~~eL~~ 533 (747)
||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |+++ ..|+++++..
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999998873 489999999999875 999999987 5876 5688776543
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.9e-35 Score=338.96 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=164.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ +.++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEEC---CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 599999999995 34699999999999999999999999999999999999999999999955 21 59
Q ss_pred EEEeccC-ccc-cccHHHHHhcCCC---CC--HHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEP-ALL-SLSIRDNIAYGRD---AT--LDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~-~lf-~~TireNi~~g~~---~~--~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQkQRialAR 459 (747)
|||+|++ .++ ..|++||+.++.. .. +.+..++ +..+ |+.. .......+||||||||++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY---------VGRF--NFKGGDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH---------HHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 566 4799999987632 11 1122222 2222 3322 234556789999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeC-ceEe-EecChHHHhhc
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDE-GRLF-EMGTHDELLAT 534 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~-G~iv-e~Gt~~eL~~~ 534 (747)
|++.+|++|||||||++||+.+...+.+.|+.+. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++.
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999998863 489999999998875 999999986 7876 57888877653
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-35 Score=283.40 Aligned_cols=154 Identities=42% Similarity=0.641 Sum_probs=143.8
Q ss_pred EEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEE
Q 004513 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390 (747)
Q Consensus 311 ~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v 390 (747)
++|++|.|++ .++++++||+|++|++++|+|+||||||||+++|.|+++|.+|+|.++|.++.......+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999953 3699999999999999999999999999999999999999999999999999887777788899999
Q ss_pred eccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEE
Q 004513 391 TQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470 (747)
Q Consensus 391 ~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illL 470 (747)
+| ||||||||++||||++.+|+++||
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchhhc-CCEEEEEeCce
Q 004513 471 DEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (747)
Q Consensus 471 DEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i~~-aD~I~vl~~G~ 521 (747)
||||++||+.++..+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999987644 5899999999999987 69999999985
No 340
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.7e-33 Score=305.13 Aligned_cols=416 Identities=14% Similarity=0.106 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPF-IVAAGGISNIFLHRLAENIQDAYAEAA 170 (747)
Q Consensus 92 srl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~w~L~li~l~~~pl-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (747)
.|+++|++.....+......++...+.++.....++-...++..+.+....+ -.++...+.+.+.+..-+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999877776664444444433333333332332222222333222211 222223333444555556666777777
Q ss_pred HHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccccc
Q 004513 171 SIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVT----HNKAH 246 (747)
Q Consensus 171 ~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~----~g~~~ 246 (747)
-.-.+...|.+.|..|+.+..+........+...+.......+.-+...+..++.++..++...+-+.-+. .+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 77777888899999999888777665555555444433333222222222222223222221111111112 23444
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------C------CC--CC------CC-C
Q 004513 247 GGEIVTALF----AVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSS-------S------TT--NY------DG-N 300 (747)
Q Consensus 247 ~G~l~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~~~-------~------~~--~~------~~-~ 300 (747)
..++...+. +++.....+..++.....+.+-..-..||-++++.-. + .. .. .+ .
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 455443322 1111222333343333344443444677776653210 0 00 00 00 0
Q ss_pred CCCCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH
Q 004513 301 TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380 (747)
Q Consensus 301 ~~~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~ 380 (747)
...+.+..|++++|++.=|++ +..+++|+||+|+.|+.+-|+||||||||+|++.|.|+.+..+|.+.--...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 011234579999999998865 445678899999999999999999999999999999999999999986442111
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHHHhccccccccc-cCCCCCCCHHH
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR--------DATLDQIEEAAKIAHAHTFISSLEKGYETQV-GRAGLALTEEQ 451 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~--------~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~v-ge~g~~LSGGQ 451 (747)
+.+-||||.|+.-.||+||-+.|.. .++++++.+.++.+++.+.+... +|+|+++ -+-...||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence 2589999999999999999998861 46789999999999998766654 6888665 46678899999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
+||+|+||-+|++|++-||||+|||||.+.|..+.+.+++. +.|.|-|.||-+.-+.-|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999888774 7899999999999999999999976
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-35 Score=342.08 Aligned_cols=198 Identities=24% Similarity=0.359 Sum_probs=163.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~---~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYG---DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 599999999995 346999999999999999999999999999999999999999999999751 269
Q ss_pred EEEeccC--cccc-ccHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHHHHhcccc
Q 004513 388 GLVTQEP--ALLS-LSIRDNIAY-GRDATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 388 ~~v~Q~~--~lf~-~TireNi~~-g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRialARAll 462 (747)
||++|++ .++. .|+.+++.. .....++++.++++.. |+. ..+......|||||||||+||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-----------~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF-----------GFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc-----------CCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 3443 588888742 1122233334444333 222 1234456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEe-EecChHHHh
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHDELL 532 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv-e~Gt~~eL~ 532 (747)
.+|++|||||||++||+.+...+.+.|+.+ +.|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999887 3599999999999875 9999999999997 789988863
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.2e-34 Score=341.24 Aligned_cols=198 Identities=21% Similarity=0.347 Sum_probs=161.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEEC---CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 489999999995 346999999999999999999999999999999999999999999999 5332 59
Q ss_pred EEEeccC-cccc-ccHHHHHhcCC-CC--C--HHHHHHHHHHHHHHHHHHhcccccc-ccccCCCCCCCHHHHHHHHHhc
Q 004513 388 GLVTQEP-ALLS-LSIRDNIAYGR-DA--T--LDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 388 ~~v~Q~~-~lf~-~TireNi~~g~-~~--~--~~~i~~a~~~~~l~~~i~~lp~G~~-t~vge~g~~LSGGQkQRialAR 459 (747)
||++|++ .++. .||.||+.++. .. . ..++.+.++ .+ |+. .........||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQ---------DF--LFHPKRAMTPVKALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHH---------hc--CCCHHHHhChhhhCCHHHHHHHHHHH
Confidence 9999986 4664 69999998753 11 1 112222222 22 221 1234455689999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEe-CceEeE-ecChHHHh
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD-EGRLFE-MGTHDELL 532 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~-~G~ive-~Gt~~eL~ 532 (747)
|++.+|++|||||||++||+.+...+.+.++.+ +.|+|+|||++..+.. ||+|++|+ +|++.+ .|+|++.+
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 999999999999999999999999999999876 4699999999999865 99999998 899865 57777653
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.4e-34 Score=342.23 Aligned_cols=198 Identities=23% Similarity=0.338 Sum_probs=162.5
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++|+|++ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999952 24689999999999999999999999999999999999999999999876 2369
Q ss_pred EEEeccCccccccHHHHHhc--C---CCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 388 GLVTQEPALLSLSIRDNIAY--G---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 388 ~~v~Q~~~lf~~TireNi~~--g---~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
||++|++. ...++.+|..+ . ....++++.++++..++.+. ........||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999873 33455555331 1 12345566666665544211 223456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEe-EecChHHH
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHDEL 531 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv-e~Gt~~eL 531 (747)
.+|++|||||||++||+.+...+.+.+... +.|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999998888765 3599999999999875 9999999999998 67887764
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.8e-35 Score=289.61 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=134.5
Q ss_pred EeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEe
Q 004513 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391 (747)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~ 391 (747)
.|++++|+ +.++++++ |+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~---~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYG---VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEEC---CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 58899994 35688884 999999999999999999999999999999999999999995 389999
Q ss_pred ccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Q 004513 392 QEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471 (747)
Q Consensus 392 Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLD 471 (747)
|++. ||||||||++||||++.+|+++|||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8753 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEeeCcchhhc-CCEEEEEeCceEeEe--cChH
Q 004513 472 EVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM--GTHD 529 (747)
Q Consensus 472 EpTsaLD~~~~~~i~~~i~~~~-~-~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~--Gt~~ 529 (747)
|||++||+.+++.+.+.++++. + ++|+|++||+++.+.. ||+|++|+++-.+.+ |.+.
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999999998764 3 3899999999999875 999999998866533 4443
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-34 Score=336.24 Aligned_cols=193 Identities=19% Similarity=0.198 Sum_probs=161.9
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ + .|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 4899999999942 25999999999999999999999999999999999999999999986 1 59
Q ss_pred EEEeccCccc-cccHHHHHhcCC-CCC-HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 388 GLVTQEPALL-SLSIRDNIAYGR-DAT-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 388 ~~v~Q~~~lf-~~TireNi~~g~-~~~-~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
+|+||++.++ +.||+||+.++. ... .....++++.. |++........+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l-----------~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL-----------QLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC-----------CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998765 689999998753 222 22233444443 333334556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChH
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~ 529 (747)
|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ ++...|+..
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 99999999999999999999999998874 37899999999998865 999999964 888777733
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.8e-34 Score=359.18 Aligned_cols=213 Identities=22% Similarity=0.358 Sum_probs=176.2
Q ss_pred cEEEEeEEEEecCC----------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC--CCceEEECCeec
Q 004513 308 NIEFRNVYFSYLSR----------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENI 375 (747)
Q Consensus 308 ~I~~~~v~f~y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p--~~G~I~i~G~~i 375 (747)
.+.++||++..+.. +...+|+|||+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999988531 234699999999999999999999999999999999999874 789999999876
Q ss_pred CCCCHHHhhcceEEEeccCcccc-ccHHHHHhcCC------CCCHHH----HHHHHHHHHHHHHHHhccccccccccCCC
Q 004513 376 KNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAG 444 (747)
Q Consensus 376 ~~~~~~~lr~~i~~v~Q~~~lf~-~TireNi~~g~------~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge~g 444 (747)
.. ..+|+.+|||+|++.++. .||+|||.|+. ..+.++ ++++++..++. +-.++.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCC
Confidence 42 346778999999988875 79999998752 122222 34444444432 23477777654
Q ss_pred -CCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcch--hhcCCEEEEEeC-
Q 004513 445 -LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMDE- 519 (747)
Q Consensus 445 -~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~--i~~aD~I~vl~~- 519 (747)
..||||||||++|||||+.+|+||+|||||||||+.+...+.+.|+++. .++|+|+++|+++. .+.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999998874 57999999999984 467999999996
Q ss_pred ceEeEecChHH
Q 004513 520 GRLFEMGTHDE 530 (747)
Q Consensus 520 G~ive~Gt~~e 530 (747)
|++++.|+..+
T Consensus 1097 G~~v~~G~~~~ 1107 (1470)
T PLN03140 1097 GQVIYSGPLGR 1107 (1470)
T ss_pred CEEEEECCccc
Confidence 89999998754
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-34 Score=335.15 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=162.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++||+++|+ ++++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .|+
T Consensus 2 i~i~nls~~~g---~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG---VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 78999999995 3569999999999999999999999999999999999999999999999831 489
Q ss_pred EEeccCccccccHHHHHhcCC-C---CC-----------HHHHHHHHH----------HHHHHHHHHhcccccc-ccccC
Q 004513 389 LVTQEPALLSLSIRDNIAYGR-D---AT-----------LDQIEEAAK----------IAHAHTFISSLEKGYE-TQVGR 442 (747)
Q Consensus 389 ~v~Q~~~lf~~TireNi~~g~-~---~~-----------~~~i~~a~~----------~~~l~~~i~~lp~G~~-t~vge 442 (747)
|++|++..+..|+.+++.-+. . .+ ...+..... ...+...+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976555567666654211 0 00 000000000 01122233333 443 23455
Q ss_pred CCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCce
Q 004513 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (747)
Q Consensus 443 ~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ 521 (747)
...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 66789999999999999999999999999999999999999999999876 5799999999999875 99999999999
Q ss_pred Ee-EecChHHHhh
Q 004513 522 LF-EMGTHDELLA 533 (747)
Q Consensus 522 iv-e~Gt~~eL~~ 533 (747)
++ ..|+++....
T Consensus 224 i~~~~g~~~~~~~ 236 (638)
T PRK10636 224 LFEYTGNYSSFEV 236 (638)
T ss_pred EEEecCCHHHHHH
Confidence 96 5788887754
No 348
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-34 Score=290.91 Aligned_cols=210 Identities=27% Similarity=0.365 Sum_probs=174.2
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCH-HHhhc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRS 385 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~-~~lr~ 385 (747)
.-|+++||+++|. ++++|+|||++|++||..+|+||||||||||++++.|.++|++|.+.+.|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3599999999994 5689999999999999999999999999999999999999999999999999987777 88999
Q ss_pred ceEEEeccCcc-c--cccHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 386 QIGLVTQEPAL-L--SLSIRDNIAYGR---------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 386 ~i~~v~Q~~~l-f--~~TireNi~~g~---------~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
+||+|+-+-.. | +.+++|-+.-|. ++++++..++-.. ++.+ |.....+..-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l------le~~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL------LELL--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH------HHHc--chhhhccCchhhcCHhHHH
Confidence 99999976432 3 467888765331 3444443332221 1211 4444555666789999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEeeCcchhhc-CCEEEEEeCceEeEecC
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML---GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~---~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt 527 (747)
|+-|||||+++|++|||||||+|||...+..+.+.+.++.. +.++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999888877742 5789999999999875 79999999999998874
No 349
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-34 Score=283.50 Aligned_cols=203 Identities=24% Similarity=0.332 Sum_probs=173.3
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCc--cc-cc
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA--LL-SL 399 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~ 399 (747)
++++|+++||+|++|+++-|+|.||||||||++.|.|-+.|++|+|.|||.|+..++....-..++-|+|||. .| +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4679999999999999999999999999999999999999999999999999999998888888999999996 45 58
Q ss_pred cHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCC
Q 004513 400 SIRDNIAYGR------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473 (747)
Q Consensus 400 TireNi~~g~------~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEp 473 (747)
||.||+.+.. ..... ...-....-.+.+..++.|++...+.+-.-|||||||-|+|+.|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999998743 12211 111122334456788899999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHh--cCCCeEEEEeeCcchh-hcCCEEEEEeCceEeEecC
Q 004513 474 TGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 474 TsaLD~~~~~~i~~~i~~~--~~~~t~I~itH~l~~i-~~aD~I~vl~~G~ive~Gt 527 (747)
|+||||.+...+++.-.+. ..+-|+++|||.++.+ ..-+|.++|++|+|+-.=+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 9999999999887765444 2356999999999775 5589999999999986543
No 350
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.8e-34 Score=301.91 Aligned_cols=229 Identities=26% Similarity=0.410 Sum_probs=186.2
Q ss_pred cEEEEeEEEEecCC-CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-----CCceEEECCeecCCCCHH
Q 004513 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLE 381 (747)
Q Consensus 308 ~I~~~~v~f~y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-----~~G~I~i~G~~i~~~~~~ 381 (747)
-+.++|++..|... ....++++|||+|++||++||||.||||||-..+.++|+++. -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47899999888532 346789999999999999999999999999999999999975 478999999999999888
Q ss_pred Hhh----cceEEEeccCcc--cc-cc----HHHHHhcCCCCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCC
Q 004513 382 WLR----SQIGLVTQEPAL--LS-LS----IRDNIAYGRDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (747)
Q Consensus 382 ~lr----~~i~~v~Q~~~l--f~-~T----ireNi~~g~~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~ 446 (747)
.+| .+|+.++|||.- -+ -| |.|-|.+.+..+ .+++.+.++.+++.+- ...+..-...
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 776 479999999962 22 24 455555554333 4455566666654221 1122334567
Q ss_pred CCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 447 LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
||||||||+-||.||+.+|++||-||||.|||...+.+|.+.|+++. .|-.+++|||+|..++. ||||.||.+|+|+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999998774 47899999999999987 9999999999999
Q ss_pred EecChHHHhhc-chHHHH-HHHh
Q 004513 524 EMGTHDELLAT-GDLYAE-LLKC 544 (747)
Q Consensus 524 e~Gt~~eL~~~-~~~~~~-l~~~ 544 (747)
|.|+.++|.+. ...|.+ +++.
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhc
Confidence 99999999986 445654 4444
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.5e-33 Score=280.07 Aligned_cols=156 Identities=21% Similarity=0.330 Sum_probs=129.9
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHH
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tir 402 (747)
.+++|+|+||+|++|++++|+||||||||||++++++ ++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 4578999999999999999999999999999999963 68999998852 111 2345888887
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHHHHHHHHhcccccC--CCEEEEeCCCCCCCH
Q 004513 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSIARAVLLN--PSILLLDEVTGGLDF 479 (747)
Q Consensus 403 eNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQkQRialARAll~~--p~illLDEpTsaLD~ 479 (747)
.+++ ..+ |+.. ..+.+..+||||||||++||||++++ |+++||||||++||+
T Consensus 68 --------------~~~l---------~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------LQFL---------IDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------HHHH---------HHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 1222 223 2222 25677889999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceE
Q 004513 480 EAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (747)
Q Consensus 480 ~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~i 522 (747)
.+.+.+.+.++++. .++|+|+|||+++.+..||+|++|++|+.
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99999999998765 58999999999999888999999976543
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.3e-34 Score=356.46 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=168.7
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC----CCCCceEEECCeecCCCCHHHhhcceEEEeccCcccc-
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY----DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~----~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~- 398 (747)
+++|+|+|+++++||++||+||||||||||+++|.|.. .|.+|+|.+||.++.+.. ...|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46899999999999999999999999999999999986 579999999999886543 346778999999998885
Q ss_pred ccHHHHHhcCCC----------CCHHHHHH-HHHHHHHHHHHHhccccccccccC-CCCCCCHHHHHHHHHhcccccCCC
Q 004513 399 LSIRDNIAYGRD----------ATLDQIEE-AAKIAHAHTFISSLEKGYETQVGR-AGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 399 ~TireNi~~g~~----------~~~~~i~~-a~~~~~l~~~i~~lp~G~~t~vge-~g~~LSGGQkQRialARAll~~p~ 466 (747)
.||+|||.|+.. .++++..+ +.+. -++ .-.|.+-.+|.||+ ....|||||||||+|||||+.+|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~--~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV-YMA--TYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-HHH--HcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 799999988521 12232221 1111 011 11344456788875 467899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCc-chh-hcCCEEEEEeCceEeEecChHHHhh
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRL-SLI-RNADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l-~~i-~~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
|++|||||+|||+.+...+.+.|+++. .++|+|+++|++ +.+ +.+|+|++|++|+++..|+++++..
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 999999999999999999999999875 378999999997 445 4599999999999999999988754
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.9e-33 Score=326.23 Aligned_cols=205 Identities=28% Similarity=0.421 Sum_probs=160.0
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
|+++|++++|+ +.++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|. . .++
T Consensus 4 l~i~~ls~~~~---~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFS---DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVA 69 (635)
T ss_pred EEEeeEEEEeC---CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEE
Confidence 88999999995 346999999999999999999999999999999999999999999999872 1 378
Q ss_pred EEeccCccc-cccHHHHHhcCCC-------------------CCHHHHHHHHH-------------HHHHHHHHHhcccc
Q 004513 389 LVTQEPALL-SLSIRDNIAYGRD-------------------ATLDQIEEAAK-------------IAHAHTFISSLEKG 435 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~~-------------------~~~~~i~~a~~-------------~~~l~~~i~~lp~G 435 (747)
|++|.+... .+++.+++..+.. ...+.+..... ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 888876432 3677776542210 00010100000 01122233333 3
Q ss_pred ccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEE
Q 004513 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYI 514 (747)
Q Consensus 436 ~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I 514 (747)
+. .......|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+.+ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 32 24456789999999999999999999999999999999999999999999887 3699999999999875 9999
Q ss_pred EEEeCceEe-EecChHHHhh
Q 004513 515 AVMDEGRLF-EMGTHDELLA 533 (747)
Q Consensus 515 ~vl~~G~iv-e~Gt~~eL~~ 533 (747)
++|++|+++ ..|++++.+.
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 999999997 4699987764
No 354
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-33 Score=271.75 Aligned_cols=227 Identities=26% Similarity=0.422 Sum_probs=179.2
Q ss_pred EEEEeEEEEecCC------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH
Q 004513 309 IEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382 (747)
Q Consensus 309 I~~~~v~f~y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~ 382 (747)
++++|+++.|..+ ....+++.|||++++|+.+||+|.||||||||.++|.|..+|++|+|++||+.+.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 5677777665322 2345899999999999999999999999999999999999999999999999987766666
Q ss_pred hhcceEEEeccCc-ccc-----ccHHHH-HhcCCCC----CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 383 LRSQIGLVTQEPA-LLS-----LSIRDN-IAYGRDA----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 383 lr~~i~~v~Q~~~-lf~-----~TireN-i~~g~~~----~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
.-++|-.++|||. -|+ |+|.|- +.+..+. ..+++.+-++.+++ +|+--+ -....||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan----~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHAN----YYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Cccccc----cchhhcCchh
Confidence 6678999999996 343 333332 1121122 23466677777765 344221 2346799999
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecCh
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~--~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~ 528 (747)
|||+||||||+-+|+|+|-||+..+||...+..+.+..-++ ..|-.-|.|+.++-.+++ +|+|+||++|+++|.|+.
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999999999999999988875444 357889999999999997 999999999999999999
Q ss_pred HHHhhcc--hHHHHHHHhH
Q 004513 529 DELLATG--DLYAELLKCE 545 (747)
Q Consensus 529 ~eL~~~~--~~~~~l~~~~ 545 (747)
.++++.. +.-.++++..
T Consensus 235 ~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 235 ADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhcCCccHHHHHHHHHH
Confidence 9999753 3444555443
No 355
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-33 Score=271.65 Aligned_cols=213 Identities=25% Similarity=0.413 Sum_probs=183.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECC-eecCCCCHHHh-hc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG-ENIKNLKLEWL-RS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G-~~i~~~~~~~l-r~ 385 (747)
.++++||+.+|+ +..+|+++||+|.+||.-+|+||||+||||++..|.|-.+|+.|+|+++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~---GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFG---GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEc---ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 478999999995 46799999999999999999999999999999999999999999999999 99999987765 66
Q ss_pred ceEEEeccCccc-cccHHHHHhcCCCC---------------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCH
Q 004513 386 QIGLVTQEPALL-SLSIRDNIAYGRDA---------------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (747)
Q Consensus 386 ~i~~v~Q~~~lf-~~TireNi~~g~~~---------------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSG 449 (747)
-||-=+|.|.+| +.||+||+.+.... ..+++.+++...+ +......-...||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~ig-----------L~~~~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIG-----------LGDERDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcc-----------cchhhhhhhhhhcc
Confidence 799999999999 58999998764321 2235555555554 33344445568999
Q ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecCh
Q 004513 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 450 GQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~ 528 (747)
||||++-|+.-+.++|++|+||||++|+-.+.....-+.++.+...+++++|-|++.+++. ||+|-||++|.+...|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999666666677788888889999999999999976 999999999999999999
Q ss_pred HHHhhc
Q 004513 529 DELLAT 534 (747)
Q Consensus 529 ~eL~~~ 534 (747)
+++.+.
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 998764
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-33 Score=327.85 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=156.3
Q ss_pred EeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE-----------ECCeecCCCCH
Q 004513 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-----------LDGENIKNLKL 380 (747)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------i~G~~i~~~~~ 380 (747)
++++++|+. ...+|++++ ++++|+++||+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 458899952 335899999 8999999999999999999999999999999999998 99998865432
Q ss_pred HH--hhcce----EEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 381 EW--LRSQI----GLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 381 ~~--lr~~i----~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
+. .+.++ .|++|.|.+|.+|++||+.+.. ..+++.++++.. |++........+||||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERL-----------GLENILDRDISELSGGELQR 220 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHH
Confidence 11 11234 4555667788889999997421 123344444444 33333455567899999999
Q ss_pred HHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCc
Q 004513 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEG 520 (747)
Q Consensus 455 ialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G 520 (747)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999887558999999999999875 9999999863
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.4e-33 Score=350.70 Aligned_cols=208 Identities=17% Similarity=0.308 Sum_probs=169.2
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC---CceEEECCeecCCCCHHHhhcceEEEeccCcccc-
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~---~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~- 398 (747)
..++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+|.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCc
Confidence 356899999999999999999999999999999999999998 999999999986654 2678999999988874
Q ss_pred ccHHHHHhcCCC-------C------CHH----------HHHHHHHHHH---------HHHHHH--hccccccccccCC-
Q 004513 399 LSIRDNIAYGRD-------A------TLD----------QIEEAAKIAH---------AHTFIS--SLEKGYETQVGRA- 443 (747)
Q Consensus 399 ~TireNi~~g~~-------~------~~~----------~i~~a~~~~~---------l~~~i~--~lp~G~~t~vge~- 443 (747)
.||+|||.|+.. . +.+ ++....+++. .+..++ .|.+-.||.||+.
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 899999988521 0 011 1111111110 122333 3444567888764
Q ss_pred CCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcc-h-hhcCCEEEEEeC
Q 004513 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLS-L-IRNADYIAVMDE 519 (747)
Q Consensus 444 g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~-~-i~~aD~I~vl~~ 519 (747)
...|||||||||+||||++.+|++|+|||||+|||+.+...+.+.|+++. .++|+|+++|+.. . ...+|+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 46899999999999999999999999999999999999999999999874 4789999999973 4 456999999999
Q ss_pred ceEeEecChHHHhh
Q 004513 520 GRLFEMGTHDELLA 533 (747)
Q Consensus 520 G~ive~Gt~~eL~~ 533 (747)
|+++++|+.++++.
T Consensus 414 G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 414 GQIVYQGPRDHILE 427 (1470)
T ss_pred ceEEEeCCHHHHHH
Confidence 99999999988864
No 358
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-32 Score=277.04 Aligned_cols=187 Identities=24% Similarity=0.382 Sum_probs=159.7
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccc--cccH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL--SLSI 401 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf--~~Ti 401 (747)
..+|+||||++++||.+||||+||||||||+++|.|.|+|++|+|.++| +|+.+..-..=| +.|.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccch
Confidence 4689999999999999999999999999999999999999999999999 576655555545 3799
Q ss_pred HHHHhcCC---CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC
Q 004513 402 RDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474 (747)
Q Consensus 402 reNi~~g~---~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpT 474 (747)
||||.+-. ..+ ++.+.+..+-+.|.+|+.. ...+.|-||+.||+.|-|...+|+|||+||..
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99987521 233 4556667777777777642 23589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 475 GGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 475 saLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+..|+.=.++=.+.++++ .+++|+|+|||+++.++. ||++++|++|+|...|+++|..+.
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 999999777666666666 678999999999999986 999999999999999999998763
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=9e-32 Score=306.59 Aligned_cols=208 Identities=30% Similarity=0.460 Sum_probs=168.5
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|+++|++++|+ ++++++|+||++.+|+++||||+||||||||+++|.|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 488999999994 567999999999999999999999999999999999999999999999872 169
Q ss_pred EEEeccCcccc-ccHHHHHhcCCCC---CHHHHHHHHH------------------H-------HHHHHHHHhccccccc
Q 004513 388 GLVTQEPALLS-LSIRDNIAYGRDA---TLDQIEEAAK------------------I-------AHAHTFISSLEKGYET 438 (747)
Q Consensus 388 ~~v~Q~~~lf~-~TireNi~~g~~~---~~~~i~~a~~------------------~-------~~l~~~i~~lp~G~~t 438 (747)
+|++|++.+.+ .||+|.+..+... -..+++++.. . +.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 99999999996 5999998876421 0111111111 0 1122222222 2322
Q ss_pred cccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEE
Q 004513 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVM 517 (747)
Q Consensus 439 ~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl 517 (747)
. ...-.+||||||-|++|||||+.+||||||||||++||.++...+.+.|..+ ++ |+|+|||+-.++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 2 3445689999999999999999999999999999999999999999999865 45 99999999999987 9999999
Q ss_pred eCceE-eEecChHHHhhc
Q 004513 518 DEGRL-FEMGTHDELLAT 534 (747)
Q Consensus 518 ~~G~i-ve~Gt~~eL~~~ 534 (747)
+.|++ ...|+|+..++.
T Consensus 224 d~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred cCCceeEecCCHHHHHHH
Confidence 99988 578888877654
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=9.2e-32 Score=318.40 Aligned_cols=220 Identities=20% Similarity=0.258 Sum_probs=165.2
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCC---CCCCceEEECCeecCCC--CH-
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY---DPTLGEVLLDGENIKNL--KL- 380 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~---~p~~G~I~i~G~~i~~~--~~- 380 (747)
..|+++|++|+|+ +.++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~---~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVG---GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeC---CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 3599999999995 346999999999999999999999999999999999864 58899998655442211 11
Q ss_pred -----------HHhhcceEEEeccCccccccHHHHHhcCC--CCCH----HHHHHHHHHHHH----------HHHHHhcc
Q 004513 381 -----------EWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATL----DQIEEAAKIAHA----------HTFISSLE 433 (747)
Q Consensus 381 -----------~~lr~~i~~v~Q~~~lf~~TireNi~~g~--~~~~----~~i~~a~~~~~l----------~~~i~~lp 433 (747)
..+++.++|++|++.+...+..+|..... ..+. +++.++++..++ ...+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12355688999988765445555542211 1122 234444443322 1222222
Q ss_pred cccc-ccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-C
Q 004513 434 KGYE-TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-A 511 (747)
Q Consensus 434 ~G~~-t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-a 511 (747)
|++ ........+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+.+ +.|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 332 1223345689999999999999999999999999999999999999999999886 6899999999999876 9
Q ss_pred CEEEEEeCceEe-EecChHHHhh
Q 004513 512 DYIAVMDEGRLF-EMGTHDELLA 533 (747)
Q Consensus 512 D~I~vl~~G~iv-e~Gt~~eL~~ 533 (747)
|+|++|++|+++ ..|++++...
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999996 6888877654
No 361
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3e-32 Score=278.55 Aligned_cols=205 Identities=26% Similarity=0.362 Sum_probs=163.2
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEe----ccCccccc
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT----QEPALLSL 399 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~----Q~~~lf~~ 399 (747)
.++++||||+|++|++++++|+|||||||++|+|.|++.|++|.|.++|.+.-+-..+.+| ++++|. |--|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeech-
Confidence 3589999999999999999999999999999999999999999999999988775544455 465554 2223222
Q ss_pred cHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCC
Q 004513 400 SIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (747)
Q Consensus 400 TireNi~~g~---~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsa 476 (747)
+.|-+..-+ +.+++++.+-+. .+.+-| +++..+-.....||-|||.|.-||.||+++|+||+|||||-+
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 444333221 455555544332 222222 456666677789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhcchHH
Q 004513 477 LDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLY 538 (747)
Q Consensus 477 LD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~~~~~ 538 (747)
||..++..|.+.+++.. .+.||++.||.++-+.. ||||++|+.|+++..|+.++|.+.-+.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~ 251 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCc
Confidence 99999999999998764 57899999999988765 9999999999999999999998764433
No 362
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=6.9e-32 Score=253.72 Aligned_cols=194 Identities=23% Similarity=0.330 Sum_probs=161.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC---CceEEECCeecCCCCHHHhh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWLR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~---~G~I~i~G~~i~~~~~~~lr 384 (747)
.+.++||+.+.+ +.-.|-|+||+|.+||++-|.||||||||||+.-+.|.+.+. +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~---g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLP---GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCC---CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 367899998875 345899999999999999999999999999999999999884 89999999999988754 6
Q ss_pred cceEEEeccCcccc-ccHHHHHhcCCCCC------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 385 SQIGLVTQEPALLS-LSIRDNIAYGRDAT------LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~-~TireNi~~g~~~~------~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
+++|+.+||++||+ .+|-+||.|.-..+ ......+++..++..+..+.| .+||||||.||++
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 78999999999996 89999999975322 233456667776666665555 4699999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHh-cCCCeEEEEeeCcchhhcCCEEEEE
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLL-MLGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i-~~~-~~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
-|+|+..|+.++||||+|.||..-+..+.+-+ .+. ..+--+|+|||+++.+..-.||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999999888887754 333 3578899999999988754454433
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4.4e-32 Score=257.27 Aligned_cols=136 Identities=36% Similarity=0.623 Sum_probs=123.1
Q ss_pred eeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCcccc-ccHHHHH
Q 004513 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNI 405 (747)
Q Consensus 327 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~-~TireNi 405 (747)
|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|++|++.+|. .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999999888999999999999999996 569999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCC
Q 004513 406 AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475 (747)
Q Consensus 406 ~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTs 475 (747)
..+++++++++.+++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33456677777665432 45778888889999999999999999999999999999996
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.6e-31 Score=309.83 Aligned_cols=217 Identities=29% Similarity=0.410 Sum_probs=181.3
Q ss_pred ccEEEEeEEEEecCCC--CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC---CCceEEECCeecCCCCHH
Q 004513 307 GNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP---TLGEVLLDGENIKNLKLE 381 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p---~~G~I~i~G~~i~~~~~~ 381 (747)
..+.++|++..-+... .+.+|+|||.+++|||+.||.||||||||||+++|+|-.+. .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3588999998876432 46799999999999999999999999999999999999975 7999999994 34567
Q ss_pred HhhcceEEEeccCcccc-ccHHHHHhcCC------CCCHHH----HHHHHHHHHHHHHHHhccccccccccC-CCCCCCH
Q 004513 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGR-AGLALTE 449 (747)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~TireNi~~g~------~~~~~~----i~~a~~~~~l~~~i~~lp~G~~t~vge-~g~~LSG 449 (747)
.+|+..|||.||..+++ .||+|++.|.. ..+.++ ++++++.-++. +=-||.||. .+..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCcccc
Confidence 78889999999999995 89999998853 223333 33344333332 124677774 3468999
Q ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcch--hhcCCEEEEEeCceEeEec
Q 004513 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMDEGRLFEMG 526 (747)
Q Consensus 450 GQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~--i~~aD~I~vl~~G~ive~G 526 (747)
|||+|++||.-++.||+||+|||||||||+.+...+.+.++++. +|||||+.=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999998874 68999999999864 4679999999999999999
Q ss_pred ChHHHhh
Q 004513 527 THDELLA 533 (747)
Q Consensus 527 t~~eL~~ 533 (747)
+++++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9988765
No 365
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=262.48 Aligned_cols=214 Identities=29% Similarity=0.423 Sum_probs=178.0
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcC--CCCCCceEEECCeecCCCCHHH-hh
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEW-LR 384 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~--~~p~~G~I~i~G~~i~~~~~~~-lr 384 (747)
-++++|++.+-.. .+++|++|||+|++||+.||.||||||||||.++|+|. |++++|+|.++|.||.+++++. -|
T Consensus 3 ~L~I~dLhv~v~~--~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEG--KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecC--chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 3789999998842 14899999999999999999999999999999999996 5889999999999999999875 57
Q ss_pred cceEEEeccCccccc-cHHHHHhcCCC----CC------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH
Q 004513 385 SQIGLVTQEPALLSL-SIRDNIAYGRD----AT------LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (747)
Q Consensus 385 ~~i~~v~Q~~~lf~~-TireNi~~g~~----~~------~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ 453 (747)
.-|.+.+|.|.=++| |+.+-|..+.+ .. ..++.++++..++++.+ ++..|+ ..+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHH
Confidence 789999999998875 88888875421 11 23444555555444421 222233 359999999
Q ss_pred HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc--CCEEEEEeCceEeEecChHH
Q 004513 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 454 RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~--aD~I~vl~~G~ive~Gt~~e 530 (747)
|.-|+.+++-+|++.|||||-||||..+-+.|-+.++.+. +++++++|||+-..+.. .|++.||-+|+|+..|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998875 68899999999888776 599999999999999999 7
Q ss_pred Hhh
Q 004513 531 LLA 533 (747)
Q Consensus 531 L~~ 533 (747)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 754
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=7.3e-30 Score=263.86 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=128.9
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHH-HhHhcCCCCCCceEEEC-C------eec---CCCCHHHhh-cceEEE
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSII-PLMERFYDPTLGEVLLD-G------ENI---KNLKLEWLR-SQIGLV 390 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~g~~~p~~G~I~i~-G------~~i---~~~~~~~lr-~~i~~v 390 (747)
+.++|+||||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+ .......++ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 3332 13433221 0 000 000001111 124455
Q ss_pred eccCcc-cc--cc---HHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccc-cccCCCCCCCHHHHHHHHHhcccc
Q 004513 391 TQEPAL-LS--LS---IRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 391 ~Q~~~l-f~--~T---ireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t-~vge~g~~LSGGQkQRialARAll 462 (747)
.|++.. ++ .+ +.+...+.. -+..+...+. .+.+..+ |+.. .......+||||||||++||||++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 555432 11 12 222222111 0111111111 1223333 4433 356778899999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEE------eCceEeEec
Q 004513 463 LNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMG 526 (747)
Q Consensus 463 ~~p--~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl------~~G~ive~G 526 (747)
.+| ++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 5999999999999999999999998764 578999999999998889999999 999999987
No 367
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.96 E-value=5e-30 Score=310.83 Aligned_cols=215 Identities=25% Similarity=0.380 Sum_probs=184.5
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC-CHHHhhc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-KLEWLRS 385 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~-~~~~lr~ 385 (747)
..+..+|+++.|+.... +++++||.|++||+.|+.|+|||||||++++|.|..+|++|++.++|+++..- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 46889999999975432 89999999999999999999999999999999999999999999999999764 4456899
Q ss_pred ceEEEeccCcccc-ccHHHHHhcC-C--CCCHHHHHH----HHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 386 QIGLVTQEPALLS-LSIRDNIAYG-R--DATLDQIEE----AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 386 ~i~~v~Q~~~lf~-~TireNi~~g-~--~~~~~~i~~----a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
+|||+||+..|+. .|.||.+.+. + .....++.+ .++..++.+. .++ ...++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-------~~~----~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-------ANK----QVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-------hcc----chhhCCCcchhhHHH
Confidence 9999999999985 8999999863 2 444444443 4444433322 222 346899999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEeeCcchhhc-CCEEEEEeCceEeEecChHHHhhc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG-RSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~-~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
|-|++.+|++++|||||+|+||.+++.+++.|++..++ +.+|+.||.+++.+. |||+.+|-+|++...|++++|.++
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 99999999999999999999999999999999888764 499999999999987 999999999999999999999876
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-29 Score=242.74 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=176.3
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECC-----eecCCCCHHH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG-----ENIKNLKLEW 382 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G-----~~i~~~~~~~ 382 (747)
-+++.++++.|.. ..-.+||||.+.|||..||||+||||||||+++|.+-+.|+.|+|.+.- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 3788999999953 3468999999999999999999999999999999999999999999864 3444444332
Q ss_pred ----hhcceEEEeccCc--cc-----cccHHHHHh-cCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCH
Q 004513 383 ----LRSQIGLVTQEPA--LL-----SLSIRDNIA-YGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (747)
Q Consensus 383 ----lr~~i~~v~Q~~~--lf-----~~TireNi~-~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSG 449 (747)
+|..-|+|-|+|. |= .+.|-|-++ .|. .|. +|. +.+.+|++..+-. .+.+.+....+||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG--~iR-----~~a~~WL~~VEI~-~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG--NIR-----AEAQDWLEEVEID-LDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh--hHH-----HHHHHHHHhcccC-cccccCcccccch
Confidence 4566799999995 11 134444432 222 121 111 2234566655443 3567888999999
Q ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeCceEeEec
Q 004513 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (747)
Q Consensus 450 GQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~G 526 (747)
|++||+.|||-|...|+++++||||.|||...+..+.++++.+- -+-.+|+|||++..++. +||.+||++|+++|+|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 99999999999999999999999999999999999999998774 36789999999999986 9999999999999999
Q ss_pred ChHHHhhc-chHHHHHH
Q 004513 527 THDELLAT-GDLYAELL 542 (747)
Q Consensus 527 t~~eL~~~-~~~~~~l~ 542 (747)
-.+..+.. ...|.+++
T Consensus 235 LTDrvLDDP~hPYTQLL 251 (258)
T COG4107 235 LTDRVLDDPHHPYTQLL 251 (258)
T ss_pred cccccccCCCCchHHHH
Confidence 88887764 34576665
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.5e-29 Score=283.78 Aligned_cols=201 Identities=24% Similarity=0.335 Sum_probs=170.0
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
.-++++|++++|+. ++++++++||.|.+|+++|||||||+|||||+++|.|...|.+|+|.+.-. + +
T Consensus 320 ~vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ 386 (530)
T COG0488 320 LVLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------K 386 (530)
T ss_pred eeEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------E
Confidence 45899999999963 267999999999999999999999999999999999999999999988652 2 6
Q ss_pred eEEEeccC-ccc-cccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 387 IGLVTQEP-ALL-SLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 387 i~~v~Q~~-~lf-~~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
|||.+|+. .++ +.|+.|++.-.. ...+.++...+...+....- +......||||||.|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~----------~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH----------HhCchhhcCHhHHHHHHHHHHhcc
Confidence 99999997 444 469999998655 33466677777666543221 234456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEe-cChHHHhh
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM-GTHDELLA 533 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~-Gt~~eL~~ 533 (747)
+|.+|||||||..||.++...+.++|..+ ..|+|+|||+-..+.. |++|+++++ ++.+. |+|++..+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999999999999999999887 4699999999999987 999999998 77665 88887654
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=4.5e-29 Score=262.39 Aligned_cols=193 Identities=21% Similarity=0.371 Sum_probs=142.6
Q ss_pred CceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHh-----c-CC----CCCCc-----------eEEECCeecCCCCHH--
Q 004513 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME-----R-FY----DPTLG-----------EVLLDGENIKNLKLE-- 381 (747)
Q Consensus 325 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~-----g-~~----~p~~G-----------~I~i~G~~i~~~~~~-- 381 (747)
..|+||+++|+.|.+++|.|+||||||||++.++ + +. .|..+ -|.+|..+|..-...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998663 1 11 12222 356666655432111
Q ss_pred --------Hhhc----------------ceEEEeccCcc-ccccHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHhcccc
Q 004513 382 --------WLRS----------------QIGLVTQEPAL-LSLSIRDNIAYGRDAT-LDQIEEAAKIAHAHTFISSLEKG 435 (747)
Q Consensus 382 --------~lr~----------------~i~~v~Q~~~l-f~~TireNi~~g~~~~-~~~i~~a~~~~~l~~~i~~lp~G 435 (747)
.+|+ .+.|..++... ...|+.||+.|..... .++..+ .+..+ |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~---------~L~~v--g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQ---------TLCDV--G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHH---------HHHHc--C
Confidence 1111 14455555443 3567777776654221 112222 22222 5
Q ss_pred ccc-cccCCCCCCCHHHHHHHHHhcccccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc
Q 004513 436 YET-QVGRAGLALTEEQKIKLSIARAVLLN---PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN 510 (747)
Q Consensus 436 ~~t-~vge~g~~LSGGQkQRialARAll~~---p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~ 510 (747)
+.. ..++...+||||||||++|||||+++ |+++||||||++||+.....+.+.|+++. .+.|+|+|+|+++.++.
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 554 46888899999999999999999996 79999999999999999999999998765 57999999999999999
Q ss_pred CCEEEEE------eCceEeEecCh
Q 004513 511 ADYIAVM------DEGRLFEMGTH 528 (747)
Q Consensus 511 aD~I~vl------~~G~ive~Gt~ 528 (747)
||+|++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999974
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=3e-29 Score=254.09 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=133.5
Q ss_pred eeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCC---------ceEEECCeecCCCCHHHhhcceEEEeccCcccc
Q 004513 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---------GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS 398 (747)
Q Consensus 328 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~---------G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~ 398 (747)
+++++++++| +++|+||||||||||+++|.+++++.. |++.++|.++... ..+++|+||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999987663 4688888776542 2356899999999887
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc----cCCCEEEEeCCC
Q 004513 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL----LNPSILLLDEVT 474 (747)
Q Consensus 399 ~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll----~~p~illLDEpT 474 (747)
|+.. ..+++.++++. + + ........||||||||++||||++ ++|+++||||||
T Consensus 89 --------~~~~-~~~~~~~~l~~----------~-~---~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSII-SQGDVSEIIEA----------P-G---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeEE-ehhhHHHHHhC----------C-C---ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 2221 13344454444 1 1 123455689999999999999986 577999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 475 GGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 475 saLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
++||+.....+.+.|+++.++.|+|+|||+++.+..||+++.|..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999988778999999999999888999999853
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-29 Score=244.36 Aligned_cols=186 Identities=22% Similarity=0.331 Sum_probs=158.3
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
++.+|++..- .+..++.++||++.+||.+-|.||||||||||+++|.|+++|++|+|.++|.++.+... ..++.+-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHH
Confidence 4556776654 45679999999999999999999999999999999999999999999999998887653 3567899
Q ss_pred EEeccCccc-cccHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc
Q 004513 389 LVTQEPALL-SLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (747)
Q Consensus 389 ~v~Q~~~lf-~~TireNi~~g~----~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~ 463 (747)
|+..++-+= ..|+.||+.|.. ..+.+.+++|++.++|..+ ..+|-+ +||-|||+|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~----------~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG----------QLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh----------hcchhHHHHHHHHHHHcC
Confidence 999999987 489999999865 2457889999999987643 334443 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhh
Q 004513 464 NPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIR 509 (747)
Q Consensus 464 ~p~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~ 509 (747)
.+++.||||||++||.+.+..+...+... .+|..||+.||+.--+.
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999999999998888665 46788999999865543
No 373
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=1.6e-25 Score=244.79 Aligned_cols=435 Identities=16% Similarity=0.170 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHHHhCCh---hhhhccCChhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 004513 60 RQTAVIRSRYVQVLLNQDM---SFFDTYGNNGDIV---SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQ- 132 (747)
Q Consensus 60 r~~~~lR~~lf~~ll~~~~---~ffd~~~~sG~il---srl~~Di~~i~~~l~~~l~~~i~~i~~~i~~li~~~~~~w~- 132 (747)
+....+|.++-+|+.++=+ .||.-.+--|.+- +++++|+....+.......++.--++-++.+-..+.-..-.
T Consensus 183 klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~ 262 (728)
T KOG0064|consen 183 KLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSV 262 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccc
Confidence 3344445555444443322 4554421223333 36888987776666655555444333322222111111100
Q ss_pred -HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 004513 133 -IALITLC--TGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGIL 209 (747)
Q Consensus 133 -L~li~l~--~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~ 209 (747)
-..+.++ .+.+-..+...+.....++..+.....+....+-...+.+-+.|-.|+..+.+.++..............
T Consensus 263 g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~l 342 (728)
T KOG0064|consen 263 GAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNL 342 (728)
T ss_pred cccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 0111111122223334444444444455555667788999999999999998888877766665554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------ccccc---HHH-----HHHHHHHHHHHHHHHHHHHH
Q 004513 210 ISLVQGLGLGFTYGLAICSCALQLWVGRFLVT------------HNKAH---GGE-----IVTALFAVILSGLGLNQAAT 269 (747)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~------------~g~~~---~G~-----l~~~~~~~~~~~~~l~~~~~ 269 (747)
......++..+-+++. =..|-|.-+++ .++.. .|. +++.--.+....-.+..++.
T Consensus 343 i~k~r~~YiMleqF~m-----KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMs 417 (728)
T KOG0064|consen 343 IFKVRLWYIMLEQFVM-----KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMS 417 (728)
T ss_pred HHHHHHHHHHHHHHHH-----HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333332222211 12233322221 11110 111 11111111222234555666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-------------CCCCC-------CCCCCCCC-----CcccEEEEeEEEEecCCCCC
Q 004513 270 NFYSFDQGRIAAYRLYEMISRS-------------SSTTN-------YDGNTLPS-----VHGNIEFRNVYFSYLSRPEI 324 (747)
Q Consensus 270 ~~~~~~~~~~s~~Ri~~~l~~~-------------~~~~~-------~~~~~~~~-----~~~~I~~~~v~f~y~~~~~~ 324 (747)
.+-.+.+-..-..|++++++.- ++..+ .++.+.+. ....|.++|+-.--|.. .
T Consensus 418 syKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~ 495 (728)
T KOG0064|consen 418 SYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--D 495 (728)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--c
Confidence 6666666555566776544210 00000 01111111 12358899987776642 3
Q ss_pred CceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHH
Q 004513 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (747)
Q Consensus 325 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireN 404 (747)
-++..++|+|++|-.+.|.||||||||+|.+.|.|+.|...|...+-- +.+|-|+||.|++=-||.||-
T Consensus 496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQ 564 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQ 564 (728)
T ss_pred eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccce
Confidence 478999999999999999999999999999999999999888776533 236999999999888999999
Q ss_pred HhcCC--------CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCC
Q 004513 405 IAYGR--------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (747)
Q Consensus 405 i~~g~--------~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsa 476 (747)
|.|.. .++|+++...++.+.|+..+ +-..|+|... +--.-||||+|||+++||.++++|+.-+|||+|||
T Consensus 565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsA 642 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSA 642 (728)
T ss_pred eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcc
Confidence 98752 58899999999999998544 4455665543 33456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEE
Q 004513 477 LDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (747)
Q Consensus 477 LD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~v 516 (747)
+-++.|..+.++.+.. |-+.|-||||.+..+.-...+-
T Consensus 643 vsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~ 680 (728)
T KOG0064|consen 643 VSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLE 680 (728)
T ss_pred cccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHh
Confidence 9999999999998764 7899999999987765443333
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.1e-28 Score=254.86 Aligned_cols=192 Identities=23% Similarity=0.263 Sum_probs=133.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHh----------------cCCCCCCc-----
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME----------------RFYDPTLG----- 366 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~----------------g~~~p~~G----- 366 (747)
.|+++|. ++|. +..++++++ |++++|+||||||||||+++|. +++.+.+|
T Consensus 3 ~i~~~nf-ksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3667765 2463 345788877 7899999999999999999998 44555556
Q ss_pred ---eEEECCeecCC-C--CHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--Hhcccc---
Q 004513 367 ---EVLLDGENIKN-L--KLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFI--SSLEKG--- 435 (747)
Q Consensus 367 ---~I~i~G~~i~~-~--~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i--~~lp~G--- 435 (747)
+|.+++.+-.. . ....+++++++++|++.++.. .++.+++..+++.+++...- ..++.|
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 56665532210 0 122356778888888877641 12233333333333221100 001111
Q ss_pred ----ccccccCCCCCCCHHHHHHHHHhcccc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcch
Q 004513 436 ----YETQVGRAGLALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (747)
Q Consensus 436 ----~~t~vge~g~~LSGGQkQRialARAll----~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~ 507 (747)
+....++++.+||||||||++||||++ ++|++|||||||++||+.+.+.+.+.++++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 122346778899999999999999996 468999999999999999999999999888767788888888777
Q ss_pred hhcCCEEEEEe
Q 004513 508 IRNADYIAVMD 518 (747)
Q Consensus 508 i~~aD~I~vl~ 518 (747)
.+.||+|++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 77899999985
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=5.2e-28 Score=247.73 Aligned_cols=192 Identities=19% Similarity=0.162 Sum_probs=141.8
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEec-CCeEEEEeCCCCCCHHHHHHhHhc-CCCCCCceEEECCeecCCCCHHHhhc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVP-AKKAVALVGRNGSGKSSIIPLMER-FYDPTLGEVLLDGENIKNLKLEWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~-~Ge~vaivG~sGsGKSTLl~ll~g-~~~p~~G~I~i~G~~i~~~~~~~lr~ 385 (747)
.|+++|+. +|.. . ++|+|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~---~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFRE---E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCC---c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58899988 7632 1 56777654 599999999999999999999994 655655655543 1222233344566
Q ss_pred ceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccc-cccccccCCCCCCCHHHHHHHHHhccccc-
Q 004513 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEK-GYETQVGRAGLALTEEQKIKLSIARAVLL- 463 (747)
Q Consensus 386 ~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~-G~~t~vge~g~~LSGGQkQRialARAll~- 463 (747)
.|++++|++...-. +..+. ..+.+++.+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~----~~r~~-gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 77 EVSFTFQLGGKKYR----VERSR-GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEEECCeEEE----EEEec-CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 79999999843221 22222 333444433221 122 25566677888999999999999999974
Q ss_pred ---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchhhc-CCEEEEEeCceE
Q 004513 464 ---------NPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (747)
Q Consensus 464 ---------~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i~~-aD~I~vl~~G~i 522 (747)
+|+++||||||++||+.+...+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|-+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6799999999999999999999999988754 7899999999998865 899999999853
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-27 Score=229.48 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=148.2
Q ss_pred cEEEEeEEEEecC----CCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECC----eecCCCC
Q 004513 308 NIEFRNVYFSYLS----RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG----ENIKNLK 379 (747)
Q Consensus 308 ~I~~~~v~f~y~~----~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G----~~i~~~~ 379 (747)
.+.++|++++|.- .-..|+|+|+||+++.|||+.+=||||+|||||+++|-+-|.|++|+|.+.. .|+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 3678888777631 1235899999999999999999999999999999999999999999999853 2443333
Q ss_pred HH----HhhcceEEEeccCcccc-cc----HHHHH-hcCCCCCHH--HHHHHHHHHHHHHHHHhccccccccccCCCCCC
Q 004513 380 LE----WLRSQIGLVTQEPALLS-LS----IRDNI-AYGRDATLD--QIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (747)
Q Consensus 380 ~~----~lr~~i~~v~Q~~~lf~-~T----ireNi-~~g~~~~~~--~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~L 447 (747)
+. -.|+.||||+|---..+ -+ +.|-+ ..|-+.+.. +....+... .+|..+... ...++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rL-------nlperLW~L---aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRL-------NLPERLWSL---APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-------CCCHHHhcC---CCccc
Confidence 33 23677999999644332 22 22322 223222211 111222222 345544432 35689
Q ss_pred CHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeC
Q 004513 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDE 519 (747)
Q Consensus 448 SGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~ 519 (747)
|||++||+.|||+++-|=+||+|||||++||+.+++.+.+.|++.+ +|..+|=|-|+-+.=+. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999998764 67788889998776555 999988743
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=3.6e-26 Score=232.77 Aligned_cols=163 Identities=23% Similarity=0.239 Sum_probs=129.8
Q ss_pred eeEEecCCeEEEEeCCCCCCHHHHHHhH----hcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccC-----cccc-c
Q 004513 330 FYLTVPAKKAVALVGRNGSGKSSIIPLM----ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEP-----ALLS-L 399 (747)
Q Consensus 330 isl~i~~Ge~vaivG~sGsGKSTLl~ll----~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~-----~lf~-~ 399 (747)
.++++.+| +++|+||||||||||+.+| .|...|..|.+..+...+.. ...+..|++++|++ .++. .
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 9999999999999999999 49999988877622211221 23456899999998 3442 4
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH------HHHhcccccCCCEEEEeCC
Q 004513 400 SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK------LSIARAVLLNPSILLLDEV 473 (747)
Q Consensus 400 TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR------ialARAll~~p~illLDEp 473 (747)
|+.||+.++. .+++.+.+ .+....||+||||| ++||||++.+|+++|||||
T Consensus 92 ~~~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 9999998752 23332222 45567899999996 7999999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHhcC--CCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 474 TGGLDFEAER-AVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 474 TsaLD~~~~~-~i~~~i~~~~~--~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
|++||+.... .+.+.|+++.+ ++|+|++||+++.+..||+|++|++
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999 99999988765 7899999999998888999999954
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=2.6e-26 Score=240.87 Aligned_cols=181 Identities=16% Similarity=0.221 Sum_probs=135.3
Q ss_pred CeEEEEeCCCCCCHHHHHHhHhcCCCCC-CceEEECCe-ecCCCC--HHHhhcceEEEeccCc---------cc-cccHH
Q 004513 337 KKAVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGE-NIKNLK--LEWLRSQIGLVTQEPA---------LL-SLSIR 402 (747)
Q Consensus 337 Ge~vaivG~sGsGKSTLl~ll~g~~~p~-~G~I~i~G~-~i~~~~--~~~lr~~i~~v~Q~~~---------lf-~~Tir 402 (747)
..+++||||||||||||+.+|.+++.+. .|+++..|. ++-... ....+.+|++++|++. +. ..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999999886 568888886 432211 1122458999999962 22 36888
Q ss_pred HHHhcCC---------CCCHHHHHHHHHHHHHHH----------HHHhccccccccccCCCCCCCHHHHHHHHHhcccc-
Q 004513 403 DNIAYGR---------DATLDQIEEAAKIAHAHT----------FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL- 462 (747)
Q Consensus 403 eNi~~g~---------~~~~~~i~~a~~~~~l~~----------~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll- 462 (747)
+||.++. ....+++.++++.+++.- .|..+-.. ..........||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 8876543 122345666666665420 01110000 12345567899999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEe
Q 004513 463 ---LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518 (747)
Q Consensus 463 ---~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~ 518 (747)
.+|+++||||||++||+.....+.+.|+++.++.|+|+|||+.+.++.||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999998877899999999988888999998774
No 379
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=249.23 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=173.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHH-Hhhcc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE-WLRSQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~-~lr~~ 386 (747)
.++++|++.. ..++|+||++++||++||.|-.|||+|=++++|.|..++.+|+|.+||.++.-.++. .++.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667776532 147899999999999999999999999999999999999999999999988777654 78889
Q ss_pred eEEEeccC---ccc-cccHHHHHhcCC--CCCHH-HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhc
Q 004513 387 IGLVTQEP---ALL-SLSIRDNIAYGR--DATLD-QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (747)
Q Consensus 387 i~~v~Q~~---~lf-~~TireNi~~g~--~~~~~-~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialAR 459 (747)
|+|||.|- -|| ..+|++||.+.. ..... -+...-+.....+++..|.-.-. -......+||||.+|++.|||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~-s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP-SPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccC-CccchhhcCCchhhhhHHHHH
Confidence 99999974 355 689999998762 11111 24445555556666776632211 122445689999999999999
Q ss_pred ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecChHH
Q 004513 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 460 All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~~e 530 (747)
.|..+|+||||||||-|+|.-+...|.+.|+++. +|+++|+||-.+.++- .||||+||.+|+|+..=+.++
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999875 6899999999998876 699999999999987544333
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.1e-26 Score=237.83 Aligned_cols=184 Identities=20% Similarity=0.206 Sum_probs=136.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhh-cc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR-SQ 386 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr-~~ 386 (747)
.|+++|.. +|. +..+++++++ +++||+|||||||||++++|. .++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47788875 773 4568999987 899999999999999999997 34554432 233 57
Q ss_pred eEEEeccCcccc-ccHHHHHhcCCCCC-HHHH-----HHHHHH----HHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 387 IGLVTQEPALLS-LSIRDNIAYGRDAT-LDQI-----EEAAKI----AHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 387 i~~v~Q~~~lf~-~TireNi~~g~~~~-~~~i-----~~a~~~----~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
+++++|+..+++ .|+++++.+..... .+.. ...-.. .+-...+..+|++.++.+ ..||+|||||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~ 136 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLS 136 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHH
Confidence 999999988775 58888876543211 0000 000000 000112334566665544 47999999999
Q ss_pred HHhccccc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 456 SIARAVLL----NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 456 alARAll~----~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
+||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.||+|++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998888899999999877788999999954
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=3.9e-26 Score=219.93 Aligned_cols=207 Identities=21% Similarity=0.345 Sum_probs=172.6
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~ 388 (747)
+.++||...- -|-.+|..+..||++-+|||||||||||+..|.|+. |-+|+|.++|.++..+...++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566665432 367789999999999999999999999999999987 57899999999999999999999999
Q ss_pred EEeccC-ccccccHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc--
Q 004513 389 LVTQEP-ALLSLSIRDNIAYGRDAT--LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL-- 463 (747)
Q Consensus 389 ~v~Q~~-~lf~~TireNi~~g~~~~--~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~-- 463 (747)
|..|+. ..|...|...+.+..++. ..++.+++... +++..+|..-..||||+.||+-+|-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 999864 578899999998866431 12233333332 45566677778999999999999998875
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCc-chhhcCCEEEEEeCceEeEecChHHHhhc
Q 004513 464 -----NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (747)
Q Consensus 464 -----~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l-~~i~~aD~I~vl~~G~ive~Gt~~eL~~~ 534 (747)
+.++||||||.++||...+..+...|.++. .|.++|+..|++ .++++||+++.++.|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 347999999999999999999988887664 689999999999 47899999999999999999999998864
No 382
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=4.6e-26 Score=250.87 Aligned_cols=197 Identities=25% Similarity=0.324 Sum_probs=166.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.|.++||+|.|+++ ..++++++|-|..++.+|+|||||+|||||++++.|.+.|..|.|.-.-+. .+
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 58999999999743 368999999999999999999999999999999999999999999876532 35
Q ss_pred EEEeccC---ccccccHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 388 GLVTQEP---ALLSLSIRDNIAY--GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 388 ~~v~Q~~---~lf~~TireNi~~--g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
++..|.- ..+..|..|+++- .+.-..+++...+..+++..+.+..|-+ +||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~----------~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMS----------QLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchh----------hcccccchhHHHHHHHh
Confidence 5556643 3456788888763 3335567888899999887666655544 79999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEe-EecChH
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHD 529 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv-e~Gt~~ 529 (747)
+.|.||||||||++||.++-....++|..+ ..++|+|+|+...+.+ |++|.+.++|.+. ..|.+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999999999999999999887 4689999999999987 9999999999875 445543
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=6.2e-25 Score=264.53 Aligned_cols=102 Identities=26% Similarity=0.492 Sum_probs=92.9
Q ss_pred cccc-cccCCCCCCCHHHHHHHHHhcccccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh
Q 004513 435 GYET-QVGRAGLALTEEQKIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR 509 (747)
Q Consensus 435 G~~t-~vge~g~~LSGGQkQRialARAll~~p---~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~ 509 (747)
|+.. ..+....+|||||||||+|||||+++| ++|||||||++||+.....+.+.|+++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5544 368888999999999999999999999 9999999999999999999999998874 5899999999999999
Q ss_pred cCCEEEEE------eCceEeEecChHHHhhcch
Q 004513 510 NADYIAVM------DEGRLFEMGTHDELLATGD 536 (747)
Q Consensus 510 ~aD~I~vl------~~G~ive~Gt~~eL~~~~~ 536 (747)
.||+|++| ++|+|++.|+++++.+...
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999 7999999999999987653
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=2.8e-24 Score=268.61 Aligned_cols=211 Identities=24% Similarity=0.344 Sum_probs=152.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHH---------hHhcCCCCCCc--------eEEE
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP---------LMERFYDPTLG--------EVLL 370 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~---------ll~g~~~p~~G--------~I~i 370 (747)
.++++|++. ..|+|+||+|++|++++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 477787752 2699999999999999999999999999999 55564333111 1344
Q ss_pred CCeecCCCC----H------HHhh---------cce-----EEEecc------------------C--------------
Q 004513 371 DGENIKNLK----L------EWLR---------SQI-----GLVTQE------------------P-------------- 394 (747)
Q Consensus 371 ~G~~i~~~~----~------~~lr---------~~i-----~~v~Q~------------------~-------------- 394 (747)
|-.++..-. . +.+| +.. .+.++. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 433332211 0 1223 111 122221 1
Q ss_pred ------cccc-ccHHHHHhcCCC-C-----CHHHHHHHHHHHHHHHHHHhcccccccc-ccCCCCCCCHHHHHHHHHhcc
Q 004513 395 ------ALLS-LSIRDNIAYGRD-A-----TLDQIEEAAKIAHAHTFISSLEKGYETQ-VGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 395 ------~lf~-~TireNi~~g~~-~-----~~~~i~~a~~~~~l~~~i~~lp~G~~t~-vge~g~~LSGGQkQRialARA 460 (747)
..+. .||.||+.++.. + +.+++.+.++ .+..+ |+... .+....+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1332 589999988642 1 1223333221 22222 66665 688889999999999999999
Q ss_pred cc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEe------CceEeEecChHH
Q 004513 461 VL---LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMD------EGRLFEMGTHDE 530 (747)
Q Consensus 461 ll---~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~------~G~ive~Gt~~e 530 (747)
|+ ++|++|||||||++||+...+.+.+.|+++. .++|+|+|+|+++.++.||+|++|. +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998774 5889999999999998899999996 899999999999
Q ss_pred Hhhc
Q 004513 531 LLAT 534 (747)
Q Consensus 531 L~~~ 534 (747)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9764
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=8.6e-25 Score=261.28 Aligned_cols=201 Identities=24% Similarity=0.368 Sum_probs=167.7
Q ss_pred CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC--CCCceEEECCeecCCCCHHHhhcceEEEeccCc-ccc
Q 004513 322 PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA-LLS 398 (747)
Q Consensus 322 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~--p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~-lf~ 398 (747)
+.+..|+||+=-++||..+||+|+||||||||+++|.|=.. ..+|+|+|||.+..+ +..+|.+|||.|+.. +-.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34578999999999999999999999999999999998543 257899999988765 668889999999874 556
Q ss_pred ccHHHHHhcCC------CCCHH----HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCC-CE
Q 004513 399 LSIRDNIAYGR------DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP-SI 467 (747)
Q Consensus 399 ~TireNi~~g~------~~~~~----~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p-~i 467 (747)
.||||-|.|.. +.+++ -++++++..++.+. -|..||.-|..||..||.|+.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 89999998852 23332 24555555554432 457799999999999999999999999999 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcch--hhcCCEEEEEe-CceEeEecChHHHh
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMD-EGRLFEMGTHDELL 532 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~--i~~aD~I~vl~-~G~ive~Gt~~eL~ 532 (747)
|+|||||||||+++...|.+.++++. .|+|+++.-|+++. .+..|+++.|+ .|+.|..|+..+-.
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 99999999999999999999998874 79999999999864 57899999996 56999999866543
No 386
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=1.2e-21 Score=201.11 Aligned_cols=220 Identities=23% Similarity=0.281 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 43 VFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122 (747)
Q Consensus 43 ~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~i~~~i~~ 122 (747)
.........+...+.+.++..++|.++++|++++|.+||++ +++|++++|+++|++.+++.+...+..++..+..+++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~ 132 (275)
T PF00664_consen 54 IFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDK-NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFS 132 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hcccccccccccccccccccccccccccccccchhhhh
Confidence 33444444555678899999999999999999999999999 59999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 004513 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQA 202 (747)
Q Consensus 123 li~~~~~~w~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~~~~~~~ 202 (747)
++++++++|.+++++++..|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++
T Consensus 133 ~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 212 (275)
T PF00664_consen 133 LILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEK 212 (275)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccccHHHHHHHHHHHHHHHHH
Q 004513 203 TLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFL-VTHNKAHGGEIVTALFAVILSGLG 263 (747)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l-v~~g~~~~G~l~~~~~~~~~~~~~ 263 (747)
..+...+.....++...+...+..+..++++++|+++ +..|.+++|.+++++.+......|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 213 YRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999999999888888888888889999999999 999999999999877766655544
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.4e-24 Score=227.28 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=140.6
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCee-c-C-----CCCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN-I-K-----NLKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~-i-~-----~~~~ 380 (747)
.|+++|. .+|.. .. ++...++ +++|+||||||||||+.+|.+++.+..|+++.++.+ + . ..+.
T Consensus 3 ~i~l~nf-~~~~~---~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~ 72 (247)
T cd03275 3 RLELENF-KSYKG---RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS 72 (247)
T ss_pred EEEEECc-cccCC---Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence 4777776 45621 11 2222344 999999999999999999999998888888765421 1 0 1111
Q ss_pred HHhhcceEEEeccCc--cccccHHHHHh-c---CCCCCHHHHHHHHHHHHHHHHHHh--ccccccccccCC---------
Q 004513 381 EWLRSQIGLVTQEPA--LLSLSIRDNIA-Y---GRDATLDQIEEAAKIAHAHTFISS--LEKGYETQVGRA--------- 443 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~--lf~~TireNi~-~---g~~~~~~~i~~a~~~~~l~~~i~~--lp~G~~t~vge~--------- 443 (747)
....-.+.+..|++. ++..++++... | +...+.+++.+.++.++++.+... +++|.-+.+.+.
T Consensus 73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 152 (247)
T cd03275 73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD 152 (247)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence 122234555555432 34444444321 1 225667788888888887533211 234433333332
Q ss_pred CCCCCHHHHHHHHHhccccc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchhhcCCEEEEEe
Q 004513 444 GLALTEEQKIKLSIARAVLL----NPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRNADYIAVMD 518 (747)
Q Consensus 444 g~~LSGGQkQRialARAll~----~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i~~aD~I~vl~ 518 (747)
..+||||||||++||||++. +|+++||||||++||+.....+.+.|+++.+ +.|+|+|||+.+.+..||+|++|.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 37899999999999999986 4999999999999999999999999988764 789999999998888899999985
Q ss_pred C
Q 004513 519 E 519 (747)
Q Consensus 519 ~ 519 (747)
.
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 4
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=223.21 Aligned_cols=216 Identities=24% Similarity=0.349 Sum_probs=173.0
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeec-CCCCHHHhh-
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI-KNLKLEWLR- 384 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i-~~~~~~~lr- 384 (747)
.-++++|++..-. .+.+.+++|||+|++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.|+ ...+...+|
T Consensus 256 ~vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3588999987642 235789999999999999999999999999999999999999999999999997 666776654
Q ss_pred cceEEEeccCc----cccccHHHHHhcCCCC----------CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHH
Q 004513 385 SQIGLVTQEPA----LLSLSIRDNIAYGRDA----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (747)
Q Consensus 385 ~~i~~v~Q~~~----lf~~TireNi~~g~~~----------~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGG 450 (747)
..+||||.|.. ....|+.||+.++... +..++.+.++.. -+..+--+.+.++ ...+||||
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l--i~~fdVr~~~~~~----~a~~LSGG 407 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL--IEEFDVRAPSPDA----PARSLSGG 407 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHH--HHHcCccCCCCCc----chhhcCCc
Confidence 56999999974 4578999999876521 122333222221 1111111333333 34689999
Q ss_pred HHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhh-cCCEEEEEeCceEeEecCh
Q 004513 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 451 QkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~-~aD~I~vl~~G~ive~Gt~ 528 (747)
+.||+-+||-|.++|++||..+||-|||..+...|++.|.+. ..|+.+++|+-.|+++- .||||.||.+|+|+...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 999999999999999999999999999999999998877655 57899999999998875 5999999999999988776
Q ss_pred HH
Q 004513 529 DE 530 (747)
Q Consensus 529 ~e 530 (747)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 65
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=6e-23 Score=247.04 Aligned_cols=97 Identities=27% Similarity=0.527 Sum_probs=88.7
Q ss_pred cccc-cccCCCCCCCHHHHHHHHHhccccc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhh
Q 004513 435 GYET-QVGRAGLALTEEQKIKLSIARAVLL---NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR 509 (747)
Q Consensus 435 G~~t-~vge~g~~LSGGQkQRialARAll~---~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~ 509 (747)
|+.. ..++...+||||||||++|||||++ +|++|||||||++||+.....+.+.|+++. +++|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5554 3688889999999999999999997 599999999999999999999999998874 5899999999999999
Q ss_pred cCCEEEEE------eCceEeEecChHHH
Q 004513 510 NADYIAVM------DEGRLFEMGTHDEL 531 (747)
Q Consensus 510 ~aD~I~vl------~~G~ive~Gt~~eL 531 (747)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.7e-22 Score=204.92 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=119.4
Q ss_pred eeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEE--CCe---ecCCCCHHHhhcceEEEeccCccccccH
Q 004513 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL--DGE---NIKNLKLEWLRSQIGLVTQEPALLSLSI 401 (747)
Q Consensus 327 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i--~G~---~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti 401 (747)
++++++++.+| +.+|+||||||||||+.+|.-.+. |+... .|. ++.... .-...|.+++|+..++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC---
Confidence 46677888887 889999999999999999874433 22221 122 111111 11346888888876665
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccc----ccCCCEEEEeCCCCCC
Q 004513 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV----LLNPSILLLDEVTGGL 477 (747)
Q Consensus 402 reNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAl----l~~p~illLDEpTsaL 477 (747)
| .....+ ...+.+++.. .....+...+||||||||++||||+ +.+|++|||||||++|
T Consensus 83 --~-----~~~~~~------~~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 83 --N-----PLCVLS------QDMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred --C-----cCCHHH------HHHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 2 111111 1222233333 2223456678999999999999999 6999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC----CCeEEEEeeCcchhhcCCEEEEEeCce
Q 004513 478 DFEAERAVQEALDLLML----GRSTIIIARRLSLIRNADYIAVMDEGR 521 (747)
Q Consensus 478 D~~~~~~i~~~i~~~~~----~~t~I~itH~l~~i~~aD~I~vl~~G~ 521 (747)
|+.....+.+.|++..+ ++|+|++||+++.+..+|+|-||..|+
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999998877632 258888999999999999999998753
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=220.58 Aligned_cols=218 Identities=19% Similarity=0.284 Sum_probs=146.6
Q ss_pred CcccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEEC--CeecCCCCHHH
Q 004513 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD--GENIKNLKLEW 382 (747)
Q Consensus 305 ~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~--G~~i~~~~~~~ 382 (747)
....|.++|++++|. +.+.++|..|++.+|+.+||+|+|||||||++++|.|-..|..=++-+- ..++..-....
T Consensus 72 ~s~dvk~~sls~s~~---g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFH---GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred ccccceeeeeeeccC---CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 345799999999995 4679999999999999999999999999999999999888854444221 11110000000
Q ss_pred hhcceEEEeccCccccccHHHHHhc-------CC-CCCHHH---HHHHHHHHHH---HHHHHhc--ccc-ccccccCCCC
Q 004513 383 LRSQIGLVTQEPALLSLSIRDNIAY-------GR-DATLDQ---IEEAAKIAHA---HTFISSL--EKG-YETQVGRAGL 445 (747)
Q Consensus 383 lr~~i~~v~Q~~~lf~~TireNi~~-------g~-~~~~~~---i~~a~~~~~l---~~~i~~l--p~G-~~t~vge~g~ 445 (747)
+. ....+....+--+.+ .. +...++ +++-+...+. +..+... ..| ..........
T Consensus 149 v~--------~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 149 VQ--------AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred HH--------HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 00 000011111111111 10 001111 1111111100 0011111 112 2233445667
Q ss_pred CCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCce-Ee
Q 004513 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR-LF 523 (747)
Q Consensus 446 ~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~-iv 523 (747)
+||||||.|++|||||+.+|++|+|||||.+||.++..-+.+.|.+.... ++++++|.-+++.. |.+|+-|++++ +.
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~ 299 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIY 299 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceee
Confidence 89999999999999999999999999999999999999999998776433 88999999999987 99999999999 77
Q ss_pred EecChHHHhhc
Q 004513 524 EMGTHDELLAT 534 (747)
Q Consensus 524 e~Gt~~eL~~~ 534 (747)
..|+++.....
T Consensus 300 y~Gnydqy~~t 310 (614)
T KOG0927|consen 300 YEGNYDQYVKT 310 (614)
T ss_pred ecCCHHHHhhH
Confidence 99999998765
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.3e-22 Score=217.35 Aligned_cols=194 Identities=21% Similarity=0.260 Sum_probs=160.9
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcc
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~ 386 (747)
..+++.+|+|.|+... -+.+.++++.++.-+.+++||+||+||||+++++.+...|..|.+.+++ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 4699999999996432 2789999999999999999999999999999999999999999999988 668
Q ss_pred eEEEeccCccc-cccHH--HHHhc-CCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc
Q 004513 387 IGLVTQEPALL-SLSIR--DNIAY-GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (747)
Q Consensus 387 i~~v~Q~~~lf-~~Tir--eNi~~-g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll 462 (747)
|+|-.|.-.=| ...+- |-..- ....++++|++.|...|+...+..-+ -..||||||-||++|-+.+
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 99999976533 33322 22111 11337899999988876554443221 2569999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceEeE
Q 004513 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (747)
Q Consensus 463 ~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive 524 (747)
.+|.+|+|||||..||.++-..+-++|+.+. .-||+|||+.+.+.. |+.+++.++|+|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999998874 469999999999987 99999999999964
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=9.7e-23 Score=223.71 Aligned_cols=199 Identities=23% Similarity=0.282 Sum_probs=144.1
Q ss_pred cccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCee--cCCCCHHHh
Q 004513 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN--IKNLKLEWL 383 (747)
Q Consensus 306 ~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~--i~~~~~~~l 383 (747)
..+|...+++..|+ ++..|.+-++++..|..+|+|||||+|||||+++|.. |.|.+-..+ +.......
T Consensus 78 ~~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~- 147 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEA- 147 (582)
T ss_pred ccceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHH-
Confidence 45799999999995 4568999999999999999999999999999999998 444433321 11111100
Q ss_pred hcceEEEeccCccccccHHHHHhcCC-----CCCHHHHHH-HHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHH
Q 004513 384 RSQIGLVTQEPALLSLSIRDNIAYGR-----DATLDQIEE-AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (747)
Q Consensus 384 r~~i~~v~Q~~~lf~~TireNi~~g~-----~~~~~~i~~-a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRial 457 (747)
.| ..+-..|-|.-+..-. ..+.+++.. ++.-.+..+..+..|- ..||||=|-|++|
T Consensus 148 -------~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaL 209 (582)
T KOG0062|consen 148 -------LQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLAL 209 (582)
T ss_pred -------Hh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHH
Confidence 01 1122233333322211 012233333 4444444444444443 4799999999999
Q ss_pred hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeCceE-eEecChHHHhhc
Q 004513 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRL-FEMGTHDELLAT 534 (747)
Q Consensus 458 ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~G~i-ve~Gt~~eL~~~ 534 (747)
||||..+||||||||||..||..+-.-+.+.|..+. .|+|+|+|+-.++.. |.-|+.+++=|+ ...|++++..+.
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999999999998764 899999999999987 999999988777 577888877653
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=211.13 Aligned_cols=169 Identities=20% Similarity=0.300 Sum_probs=133.8
Q ss_pred ceeeeeEEec-----CCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCc-cccc
Q 004513 326 ILSGFYLTVP-----AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA-LLSL 399 (747)
Q Consensus 326 vL~~isl~i~-----~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~-lf~~ 399 (747)
.+.++.|++. .||+++++||||-||||++++|.|.++|++|. ..++ +|+|=||--. -|.+
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCC
Confidence 4556666654 56889999999999999999999999999998 2222 6999999643 4899
Q ss_pred cHHHHHhcCC-C-CCHHHHH-HHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCC
Q 004513 400 SIRDNIAYGR-D-ATLDQIE-EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (747)
Q Consensus 400 TireNi~~g~-~-~~~~~i~-~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsa 476 (747)
||++-+.-.. . +....++ ++++-. .++.....+..+||||+-||||||-||.+++|+||||||++.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl-----------~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPL-----------NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCcc-----------chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 9999875332 1 2333332 233333 344444555668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEEeC
Q 004513 477 LDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDE 519 (747)
Q Consensus 477 LD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl~~ 519 (747)
||.+.+-.+-++|++.. .++|.++|-|++-.+.. +||++|++.
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999998874 57899999999999986 999999953
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.9e-21 Score=207.14 Aligned_cols=187 Identities=24% Similarity=0.330 Sum_probs=147.7
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.+-+.||+|.|++ ..|.+.+++|-|.--..+|||||||.|||||+++|.|-++|+.|+.+=+. |-+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4668999999974 46889999999999999999999999999999999999999999986554 3479
Q ss_pred EEEeccCc--cc-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC
Q 004513 388 GLVTQEPA--LL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (747)
Q Consensus 388 ~~v~Q~~~--lf-~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~ 464 (747)
|+.-|... |- .-|-.|.+.-+-+.+-++.+.++-..+|...- .|+ .-..||||||.||++|---++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhcCC
Confidence 99998764 32 35777777644444555555666555543221 121 2357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CCEEEEEeC
Q 004513 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDE 519 (747)
Q Consensus 465 p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD~I~vl~~ 519 (747)
||||||||||.+||.++-..+-++|+++. ..||+|+|+-..+.. --..+|+++
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVEN 776 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEcc
Confidence 99999999999999999999999999874 579999999887754 223445444
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=8.4e-21 Score=189.38 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=77.5
Q ss_pred HHhccccccccccCCCCCCCHHHHHHHHHhcccc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEee
Q 004513 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIAR 503 (747)
Q Consensus 429 i~~lp~G~~t~vge~g~~LSGGQkQRialARAll----~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH 503 (747)
+..+|+|..|++ ||||||||++||||+. .+|+++|+||||++||+.....+.+.++++.+ ++|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 567899998888 9999999999999984 79999999999999999999999999987754 589999999
Q ss_pred CcchhhcCCEEEEEeC
Q 004513 504 RLSLIRNADYIAVMDE 519 (747)
Q Consensus 504 ~l~~i~~aD~I~vl~~ 519 (747)
+.+.+..+|+++.+.+
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 397
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=2.6e-20 Score=184.32 Aligned_cols=221 Identities=24% Similarity=0.273 Sum_probs=172.2
Q ss_pred EEEEeEEEEecC-CCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC----CCCceEEECCeecCCCCHHHh
Q 004513 309 IEFRNVYFSYLS-RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD----PTLGEVLLDGENIKNLKLEWL 383 (747)
Q Consensus 309 I~~~~v~f~y~~-~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~----p~~G~I~i~G~~i~~~~~~~l 383 (747)
+.++|++..+.. .+...+++++|+++..||+-|+||.||||||-+.++|+|..+ .+.-+.++|++|+-.++++..
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 345666665542 233568999999999999999999999999999999999875 345667789999999988877
Q ss_pred hc----ceEEEeccCccc---ccc----HHHHHhcC----C-----CCCHHHHHHHHHHHHHHH--HHH-hccccccccc
Q 004513 384 RS----QIGLVTQEPALL---SLS----IRDNIAYG----R-----DATLDQIEEAAKIAHAHT--FIS-SLEKGYETQV 440 (747)
Q Consensus 384 r~----~i~~v~Q~~~lf---~~T----ireNi~~g----~-----~~~~~~i~~a~~~~~l~~--~i~-~lp~G~~t~v 440 (747)
|+ .|++++|+|.-. +.+ +-+||-+. + ...+.+..+.+..+|+++ +|. +.|.
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~------ 157 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY------ 157 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc------
Confidence 64 467999999743 222 44555331 1 123455566777777633 333 3333
Q ss_pred cCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcchhhc-CCEEEEE
Q 004513 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVM 517 (747)
Q Consensus 441 ge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~i~~-aD~I~vl 517 (747)
.|..|+-|++-||-|+..+|++||-||||.++|+.++.+|...+.++. .+.|+++++|++..+.. ||+|-||
T Consensus 158 -----ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~Vl 232 (330)
T COG4170 158 -----ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232 (330)
T ss_pred -----hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEE
Confidence 466788999999999999999999999999999999999999998775 46788899999999865 9999999
Q ss_pred eCceEeEecChHHHhhcc-hHHHH
Q 004513 518 DEGRLFEMGTHDELLATG-DLYAE 540 (747)
Q Consensus 518 ~~G~ive~Gt~~eL~~~~-~~~~~ 540 (747)
-=|+-+|.+..++|++.. -.|.+
T Consensus 233 YCGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 233 YCGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred EecccccccchhHHhcCCCCchHH
Confidence 999999999999999863 34543
No 398
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=3.6e-20 Score=222.10 Aligned_cols=206 Identities=21% Similarity=0.333 Sum_probs=171.3
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC---CCceEEECCeecCCCCHHHhhcceEEEeccCcccc-
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP---TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p---~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~- 398 (747)
...+|+|++.-++||+.+-++||.|||||||+++|.|-.+- ..|+|..||++.++... ++.++|.+|+..-|.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 45789999999999999999999999999999999998764 35799999999998876 778999999998885
Q ss_pred ccHHHHHhcCC-------CCC---HHHHHHHHHHHHHHHHHHhccccccccccCCC-CCCCHHHHHHHHHhcccccCCCE
Q 004513 399 LSIRDNIAYGR-------DAT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAG-LALTEEQKIKLSIARAVLLNPSI 467 (747)
Q Consensus 399 ~TireNi~~g~-------~~~---~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g-~~LSGGQkQRialARAll~~p~i 467 (747)
.||||-|.|.. .++ +.+..++ .....-.+-.|....||.||.+. ...|||||.||++|-+++.++++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~--~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~ 281 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAA--MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHH--HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcce
Confidence 89999999842 122 2222221 22222234467788999999765 56999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCc--chhhcCCEEEEEeCceEeEecChHHHhh
Q 004513 468 LLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRL--SLIRNADYIAVMDEGRLFEMGTHDELLA 533 (747)
Q Consensus 468 llLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l--~~i~~aD~I~vl~~G~ive~Gt~~eL~~ 533 (747)
+..||+|.|||..|.-+|.++|+++. .+.|.++.=|+. +.....|.|++|.+|+++.+|+.++.+.
T Consensus 282 ~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999998875 366777776876 4567799999999999999999998875
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=3.7e-20 Score=187.91 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=108.9
Q ss_pred eeeeeEEecCCe-EEEEeCCCCCCHHHHHHhHh--------cCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccc
Q 004513 327 LSGFYLTVPAKK-AVALVGRNGSGKSSIIPLME--------RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397 (747)
Q Consensus 327 L~~isl~i~~Ge-~vaivG~sGsGKSTLl~ll~--------g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf 397 (747)
.-++||++.+|+ +++|+||||||||||++.|. |.+-|....+ .++|+.|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457999999995 79999999999999999988 6555532111 234444432111
Q ss_pred cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCC
Q 004513 398 SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (747)
Q Consensus 398 ~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaL 477 (747)
. .+..+.++-.++|+||||+..|++++ .+|+++|+||||+++
T Consensus 80 g-------------------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 80 G-------------------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred C-------------------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 0 11112233357999999999999985 899999999999999
Q ss_pred CHHHHHHHH-HHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceEeEec
Q 004513 478 DFEAERAVQ-EALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (747)
Q Consensus 478 D~~~~~~i~-~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~G 526 (747)
|+.....+. ..++.+. .+.|+|++||..+..+.||++++|++|++...+
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 999988775 4566554 478999999997766789999999999997653
No 400
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=4.2e-19 Score=175.42 Aligned_cols=210 Identities=22% Similarity=0.296 Sum_probs=155.7
Q ss_pred cccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCC-CCH----
Q 004513 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN-LKL---- 380 (747)
Q Consensus 306 ~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~-~~~---- 380 (747)
...|++.++.|+|+.. .|++-|+|++++.|..+.+||.||||||||+++|.|-.-...|.|.+.|.+.-. -.+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3579999999999743 389999999999999999999999999999999999888888999999975422 111
Q ss_pred ------HHhhcceEEEeccCcccc-ccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHH
Q 004513 381 ------EWLRSQIGLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (747)
Q Consensus 381 ------~~lr~~i~~v~Q~~~lf~-~TireNi~~g~-~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQk 452 (747)
.+|++.+++.- +..|.. -++ +.+.||- ..+.++=++.++. +|--+--|-..+|-|||
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV~g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGVGGDDPERREKLIDI-------------LDIDLRWRMHKVSDGQR 153 (291)
T ss_pred ceeEecccccccccccc-cccccccccH-HHHHhhccCCChhHhhhhhhh-------------eeccceEEEeeccccch
Confidence 12233233222 222222 233 3344443 2222322222221 23333445677999999
Q ss_pred HHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEeeCcchhhc-CCEEEEEeCceEeEecChH
Q 004513 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (747)
Q Consensus 453 QRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~--~~~~t~I~itH~l~~i~~-aD~I~vl~~G~ive~Gt~~ 529 (747)
+|+.|+..|++.=++|+|||-|--||...+..+.+.++.- .++.|++..||-.+-++. +.+++.|++|+++..-.++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999988654 368899999999988765 9999999999999865555
Q ss_pred HHh
Q 004513 530 ELL 532 (747)
Q Consensus 530 eL~ 532 (747)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 543
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=7.3e-20 Score=187.74 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=113.0
Q ss_pred eeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHH-hhc-----ceEEEeccCccccccH
Q 004513 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRS-----QIGLVTQEPALLSLSI 401 (747)
Q Consensus 328 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~-lr~-----~i~~v~Q~~~lf~~Ti 401 (747)
+++.+...+| +.+|+|+||||||||+.+|.-.+-...... ... -.... ++. .|-...+...- .=.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~~~--~~~ 85 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGNPG--NIQ 85 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeCCC--ccc
Confidence 4556666665 778999999999999998865542111100 000 00111 111 11111111000 002
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc----cccCCCEEEEeCCCCCC
Q 004513 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA----VLLNPSILLLDEVTGGL 477 (747)
Q Consensus 402 reNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA----ll~~p~illLDEpTsaL 477 (747)
.+|+.+. .+.+.+.+++..... +.+..++.+.+.. ..+...||||||||+.+|++ ++.+|+++|+||||++|
T Consensus 86 ~~n~~~~--~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~L 161 (213)
T cd03277 86 VDNLCQF--LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGM 161 (213)
T ss_pred cCCceEE--EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccC
Confidence 2333321 234445555444433 4445666665433 55778999999999887654 46899999999999999
Q ss_pred CHHHHHHHHHHHHHhcC--C-CeEEEEeeCcchh-hcCC--EEEEEeCce
Q 004513 478 DFEAERAVQEALDLLML--G-RSTIIIARRLSLI-RNAD--YIAVMDEGR 521 (747)
Q Consensus 478 D~~~~~~i~~~i~~~~~--~-~t~I~itH~l~~i-~~aD--~I~vl~~G~ 521 (747)
|+.+.+.+.+.+++..+ + .|+|++||++... ..|| +|++|.+|+
T Consensus 162 D~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 162 DPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999987753 3 4799999998554 3454 888888886
No 402
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.5e-19 Score=190.74 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHhccccc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCce
Q 004513 446 ALTEEQKIKLSIARAVLL----NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (747)
Q Consensus 446 ~LSGGQkQRialARAll~----~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ 521 (747)
.|||||+||++|||+++. +|+++||||||++||+.....+.+.++++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997653 9999999999999999999999999998877899999999999888899999998874
Q ss_pred E
Q 004513 522 L 522 (747)
Q Consensus 522 i 522 (747)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=3.3e-19 Score=193.33 Aligned_cols=190 Identities=21% Similarity=0.316 Sum_probs=132.6
Q ss_pred eEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE-----------ECCeecCCCCHH
Q 004513 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-----------LDGENIKNLKLE 381 (747)
Q Consensus 313 ~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------i~G~~i~~~~~~ 381 (747)
++..+|..+ ...|.++- +.++|+.+||+||||-||||.+++|.|.+.|.=|+-. +-|..+.++-.+
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 566788532 22333332 2578999999999999999999999999999877531 122222111111
Q ss_pred H----hh--cceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Q 004513 382 W----LR--SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (747)
Q Consensus 382 ~----lr--~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRi 455 (747)
- +| .++-||---|-.+.|+|+|-+.--.. .... ++.++.| +++..+......||||+-||+
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--~g~~---------devve~l--~L~nvl~r~v~~LSGGELQr~ 222 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--RGKF---------DEVVERL--GLENVLDRDVSELSGGELQRV 222 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh--cCcH---------HHHHHHh--cchhhhhhhhhhcCchHHHHH
Confidence 0 00 11223333345556666665532110 0122 2333333 455666677788999999999
Q ss_pred HHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchhhc-CCEEEEEe
Q 004513 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMD 518 (747)
Q Consensus 456 alARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i~~-aD~I~vl~ 518 (747)
|||.|+++++|+|++|||||-||...+-..-+.|+++.+ +++||+|-|+|..+.. +|.|-|+-
T Consensus 223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 223 AIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999876 6999999999999986 89988873
No 404
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.78 E-value=5.5e-19 Score=184.92 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=136.5
Q ss_pred EEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE--ECCeecCCCCHHHhhcce--EEEeccCccccccHHHHHhc
Q 004513 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL--LDGENIKNLKLEWLRSQI--GLVTQEPALLSLSIRDNIAY 407 (747)
Q Consensus 332 l~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~--i~G~~i~~~~~~~lr~~i--~~v~Q~~~lf~~TireNi~~ 407 (747)
+.+.+|++++|+||+|+|||||++.|.+.++...+.+. +-...-+..+..++.+.+ .+|-.+.. .+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~---~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD---EPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC---CCHHHHHHH
Confidence 57899999999999999999999999999887644332 221111223444444333 01110000 011111100
Q ss_pred CCCCCHHHHHHHHHHH---H-----HHHHHHhccccccccccCCCCCCCHHH--------HHHHHHhcccccCCCEEEEe
Q 004513 408 GRDATLDQIEEAAKIA---H-----AHTFISSLEKGYETQVGRAGLALTEEQ--------KIKLSIARAVLLNPSILLLD 471 (747)
Q Consensus 408 g~~~~~~~i~~a~~~~---~-----l~~~i~~lp~G~~t~vge~g~~LSGGQ--------kQRialARAll~~p~illLD 471 (747)
. ..+.+.++.. + +-|.+..++.++++.+++.|.++|||| |||+++||+++++++|.+|
T Consensus 88 ~-----~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 A-----EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred H-----HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 0 0011111111 1 234577889999999999999999999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHhhcchHHHHHHHhH
Q 004513 472 EVTGGLDFEAERA-VQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (747)
Q Consensus 472 EpTsaLD~~~~~~-i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~~~~~~~~~l~~~~ 545 (747)
||+.+|+.++.. ++ +..+. .++|.|+++|++.+..++|.|.||++|++ +++++..++.|..++..+
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~r 229 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLLR 229 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHHH
Confidence 999999765543 33 33333 57999999999999999999999999998 788887777787765543
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=3.9e-18 Score=195.79 Aligned_cols=105 Identities=26% Similarity=0.474 Sum_probs=93.3
Q ss_pred cccc-cccCCCCCCCHHHHHHHHHhcccccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhh
Q 004513 435 GYET-QVGRAGLALTEEQKIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIR 509 (747)
Q Consensus 435 G~~t-~vge~g~~LSGGQkQRialARAll~~p---~illLDEpTsaLD~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~ 509 (747)
|+.. .+|....+|||||.|||-||.-|.+.+ -+|||||||.||-.+--+++++.|.++ .+|.|||+|-|.|+.++
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 4443 369999999999999999999999998 999999999999999888888888776 47999999999999999
Q ss_pred cCCEEEEE------eCceEeEecChHHHhhcchHHH
Q 004513 510 NADYIAVM------DEGRLFEMGTHDELLATGDLYA 539 (747)
Q Consensus 510 ~aD~I~vl------~~G~ive~Gt~~eL~~~~~~~~ 539 (747)
.||+|+=| +.|+|+.+|||+|+.+..+.|.
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~T 925 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYT 925 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchh
Confidence 99999998 5789999999999988654443
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=3.1e-18 Score=214.91 Aligned_cols=209 Identities=25% Similarity=0.327 Sum_probs=143.2
Q ss_pred ceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHh------cC---CCCCCceEEECCeecCCCC----------HHHhhcc
Q 004513 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME------RF---YDPTLGEVLLDGENIKNLK----------LEWLRSQ 386 (747)
Q Consensus 326 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~------g~---~~p~~G~I~i~G~~i~~~~----------~~~lr~~ 386 (747)
-|+||+++||-|.+++|.|.||||||||++-.+ .+ .+.-+--|.||-.+|..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999998554 11 1233344777766664332 1234443
Q ss_pred eEEEec------cCccc--c------------ccHHHHHhc------------CCCCCHH-----------------HHH
Q 004513 387 IGLVTQ------EPALL--S------------LSIRDNIAY------------GRDATLD-----------------QIE 417 (747)
Q Consensus 387 i~~v~Q------~~~lf--~------------~TireNi~~------------g~~~~~~-----------------~i~ 417 (747)
.+-.|+ .+-.| | |.+.=++.| |..+.++ .+.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 332221 11112 1 011111111 1111111 112
Q ss_pred HHHHHH----HHHHH---HHhccccccccccCCCCCCCHHHHHHHHHhcccccC---CCEEEEeCCCCCCCHHHHHHHHH
Q 004513 418 EAAKIA----HAHTF---ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN---PSILLLDEVTGGLDFEAERAVQE 487 (747)
Q Consensus 418 ~a~~~~----~l~~~---i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~---p~illLDEpTsaLD~~~~~~i~~ 487 (747)
+|++.. .+... +..+--||-+ +|+...+|||||.|||-||.-|.++ +.+|||||||.||++..-+.+.+
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 222211 12222 2233335543 5999999999999999999999876 78999999999999999999999
Q ss_pred HHHHh-cCCCeEEEEeeCcchhhcCCEEEEE------eCceEeEecChHHHhhcc
Q 004513 488 ALDLL-MLGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMGTHDELLATG 535 (747)
Q Consensus 488 ~i~~~-~~~~t~I~itH~l~~i~~aD~I~vl------~~G~ive~Gt~~eL~~~~ 535 (747)
+++++ ..|.|+|+|.|+++.++.||+|+=| +.|+|+.+|||+++.+..
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 98877 4789999999999999999999999 468999999999998754
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=8.1e-18 Score=165.25 Aligned_cols=136 Identities=25% Similarity=0.287 Sum_probs=99.6
Q ss_pred eeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE-EEeccCccccccHHHHHhcC
Q 004513 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG-LVTQEPALLSLSIRDNIAYG 408 (747)
Q Consensus 330 isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~-~v~Q~~~lf~~TireNi~~g 408 (747)
.++.+.++.++.|+|||||||||+++.+.-..-..+|.+.... +. +.+ .+++...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3444555679999999999999999997655544444443311 00 111 122222111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccccc----CCCEEEEeCCCCCCCHHHHHH
Q 004513 409 RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL----NPSILLLDEVTGGLDFEAERA 484 (747)
Q Consensus 409 ~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~----~p~illLDEpTsaLD~~~~~~ 484 (747)
.-+. .+||+||+||++|||++.. +|+++|||||++++|+.....
T Consensus 72 ---------------------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ---------------------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ---------------------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0000 0199999999999999986 789999999999999999999
Q ss_pred HHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 485 VQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 485 i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
+.+.+.+.. ++.++|++||+.+....+|++++|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 988887664 36899999999999999999999964
No 408
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=178.91 Aligned_cols=198 Identities=24% Similarity=0.378 Sum_probs=150.5
Q ss_pred CCcccEEEEeEEEEecCC-----------------------CCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcC
Q 004513 304 SVHGNIEFRNVYFSYLSR-----------------------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (747)
Q Consensus 304 ~~~~~I~~~~v~f~y~~~-----------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~ 360 (747)
+..+.+.|+|++..|.+. ....+|+|+||+|+||+.++|||+|||||||++++|+|.
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 445668888998877431 123589999999999999999999999999999999986
Q ss_pred --------CCCCCceEEECCeecCCCCHHHhhcceEEEec--cCccccccHHHHHhcCCCC-CHHHHHHHHHHHHHHHHH
Q 004513 361 --------YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ--EPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHAHTFI 429 (747)
Q Consensus 361 --------~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q--~~~lf~~TireNi~~g~~~-~~~~i~~a~~~~~l~~~i 429 (747)
|+|++|.|.+--..+ -+.+|- ||.+=.-||.|.+. ... +..--.+++..+++.+.+
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep~f~~~tilehl~--s~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEPEFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hhcccccccCCCCCceeccccch-----------hhccCcccccccCchhHHHHHh--hccCchhHHHHHHHhhccchhh
Confidence 579999998754222 123333 34433457777653 222 222345677777765543
Q ss_pred HhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEeeCcch
Q 004513 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSL 507 (747)
Q Consensus 430 ~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~--~~~t~I~itH~l~~ 507 (747)
. | -..-..||-|||-|..||+++...|.+++.||.-|.||+.|...+...|.++. .+-|.++||||.+.
T Consensus 500 l-----y----Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 L-----Y----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred h-----h----hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 2 1 12335699999999999999999999999999999999999999988887775 68899999999999
Q ss_pred hhc--CCEEEEEeCceEe
Q 004513 508 IRN--ADYIAVMDEGRLF 523 (747)
Q Consensus 508 i~~--aD~I~vl~~G~iv 523 (747)
+.. -|+++.+.=|+..
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 875 6999988777654
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=4.3e-17 Score=173.11 Aligned_cols=192 Identities=17% Similarity=0.149 Sum_probs=120.9
Q ss_pred eeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCC---------------------------------------Cc-
Q 004513 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---------------------------------------LG- 366 (747)
Q Consensus 327 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~---------------------------------------~G- 366 (747)
+++.++.+.+| +.+|+|||||||||++.+|.-+.... +|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34567777776 78899999999999998865333110 11
Q ss_pred -eEEECCeecCC-CCHHHhhcceEEEeccCccccccHHHHHhcCC---CCCHHHHHHHHHHH-HHHHHHHh---cccccc
Q 004513 367 -EVLLDGENIKN-LKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQIEEAAKIA-HAHTFISS---LEKGYE 437 (747)
Q Consensus 367 -~I~i~G~~i~~-~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~~~~~i~~a~~~~-~l~~~i~~---lp~G~~ 437 (747)
.+.+||..++. -....+-..|.+.+++..|+.++-.+-..|-. ...+.++..+.+.. .+...... -|+..+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~d~ 170 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHRDD 170 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence 34466666554 11222334566777777777544333332211 01122222222211 11111122 355444
Q ss_pred ccccCCC----CCCCHHHHHHHHHhcccc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 004513 438 TQVGRAG----LALTEEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (747)
Q Consensus 438 t~vge~g----~~LSGGQkQRialARAll---------~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~ 504 (747)
..+.-++ ..+|+||||+++|||+|+ .+|+++||||||++||+.....+.+.+++.. .+++++|+
T Consensus 171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~ 247 (270)
T cd03242 171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTD 247 (270)
T ss_pred eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCC
Confidence 4443333 348999999999999974 8999999999999999999999999987653 46666666
Q ss_pred cchhhc-C---CEEEEEeCceE
Q 004513 505 LSLIRN-A---DYIAVMDEGRL 522 (747)
Q Consensus 505 l~~i~~-a---D~I~vl~~G~i 522 (747)
...+.. | ++|+.|++|+|
T Consensus 248 ~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 248 LADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred chhccchhccCccEEEEeCcEE
Confidence 655544 5 78999999986
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.71 E-value=9e-18 Score=173.33 Aligned_cols=152 Identities=20% Similarity=0.122 Sum_probs=111.4
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE-EEeccCccccccHH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG-LVTQEPALLSLSIR 402 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~-~v~Q~~~lf~~Tir 402 (747)
..+.+|+++++++|++++|.||||+||||+++.+.- -.+..++| |||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 468999999999999999999999999999999981 12333566 7777653222 11
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhccc--ccCCCEEEEeCC---CCCC
Q 004513 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV--LLNPSILLLDEV---TGGL 477 (747)
Q Consensus 403 eNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAl--l~~p~illLDEp---TsaL 477 (747)
+.| +...++.+. ...++|.|++|+..+|+++ +.+|+++||||| |+++
T Consensus 74 ~~i--------------l~~~~l~d~--------------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI--------------LARVGASDS--------------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee--------------Eeeeccccc--------------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 111 111111110 1246899999999999999 899999999999 9999
Q ss_pred CHHHHHHH-HHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecC
Q 004513 478 DFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 478 D~~~~~~i-~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt 527 (747)
|+...... .+.+.+ ..++++|++||..+..+.||++..+++|++...++
T Consensus 126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 99866533 344433 34789999999655555699999999999976653
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.1e-16 Score=193.08 Aligned_cols=100 Identities=26% Similarity=0.406 Sum_probs=90.4
Q ss_pred ccccc-ccCCCCCCCHHHHHHHHHhcccccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc
Q 004513 435 GYETQ-VGRAGLALTEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN 510 (747)
Q Consensus 435 G~~t~-vge~g~~LSGGQkQRialARAll~~p--~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~ 510 (747)
|++.. .+....+|||||+|||+|||||..+| ++|||||||++||++....+.+.|+++. +|+|+|+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 55443 57788999999999999999999986 8999999999999999999999998874 58899999999999999
Q ss_pred CCEEEEE------eCceEeEecChHHHhhc
Q 004513 511 ADYIAVM------DEGRLFEMGTHDELLAT 534 (747)
Q Consensus 511 aD~I~vl------~~G~ive~Gt~~eL~~~ 534 (747)
||+|++| ++|+|++.|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998653
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.68 E-value=1.3e-16 Score=192.98 Aligned_cols=137 Identities=23% Similarity=0.366 Sum_probs=106.1
Q ss_pred cccccHHHHHhcCCC--CCHH--HH-HHHHHHH-HHHHHHHhcccccccc-ccCCCCCCCHHHHHHHHHhcccccCC--C
Q 004513 396 LLSLSIRDNIAYGRD--ATLD--QI-EEAAKIA-HAHTFISSLEKGYETQ-VGRAGLALTEEQKIKLSIARAVLLNP--S 466 (747)
Q Consensus 396 lf~~TireNi~~g~~--~~~~--~i-~~a~~~~-~l~~~i~~lp~G~~t~-vge~g~~LSGGQkQRialARAll~~p--~ 466 (747)
++..||.|.+.|... .+.+ .+ ..+++.. .--+++..+ |++.. .+....+|||||||||+|||||..+| +
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ 511 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLKFLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV 511 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence 467788888777442 2221 11 1111111 001234443 66544 57788899999999999999999997 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEE------eCceEeEecChHHHhhc
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMGTHDELLAT 534 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl------~~G~ive~Gt~~eL~~~ 534 (747)
+|||||||++||+.....+.+.|+++. .|.|+|+|+|+++.+..||+|++| ++|+|+..|+++++.+.
T Consensus 512 llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 512 LYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 999999999999999999999998875 489999999999999899999999 99999999999998654
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.66 E-value=1.1e-16 Score=162.54 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=98.7
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccc-cccHH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIR 402 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Tir 402 (747)
.++++|++|+. |++++|+||||||||||+++|.+..- +...|.++.. -.+++|...+| ..|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccch
Confidence 35778887765 79999999999999999999987443 2236655532 13666755566 58999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHH
Q 004513 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482 (747)
Q Consensus 403 eNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~ 482 (747)
||+.++......+..+ +.+.++.+. .++|+++|+||||+++|+...
T Consensus 78 d~l~~~~s~~~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGISYFYAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hccccccChHHHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence 9998876432222222 122222221 179999999999999999988
Q ss_pred HHHHH-HHHHh-cCCCeEEEEeeCcchhhc---CCEEEEE
Q 004513 483 RAVQE-ALDLL-MLGRSTIIIARRLSLIRN---ADYIAVM 517 (747)
Q Consensus 483 ~~i~~-~i~~~-~~~~t~I~itH~l~~i~~---aD~I~vl 517 (747)
..+.. .++.+ ..+.|+|++||+++.+.. .++|-.+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 76543 45554 347899999999877654 4455444
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.65 E-value=9.6e-17 Score=163.14 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=102.1
Q ss_pred eeeEEecCCeEEEEeCCCCCCHHHHHHhHhcC-CCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhc
Q 004513 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERF-YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAY 407 (747)
Q Consensus 329 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~-~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~ 407 (747)
..++++.+|++++|+|||||||||++++|.+. +.+..|...- + .+..+++..|....|. ..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d~--- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AEDS--- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Cccc---
Confidence 34555668999999999999999999999943 2222221110 0 0113443332221111 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHH
Q 004513 408 GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487 (747)
Q Consensus 408 g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~ 487 (747)
+.++-..++++++| +..+.+.+.+|+++||||||+++|+.....+..
T Consensus 85 --------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 85 --------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred --------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 11122345566665 666677788999999999999999997776644
Q ss_pred -HHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHH
Q 004513 488 -ALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 488 -~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~e 530 (747)
.++.+. .+.++|++||+.+.+..||++..++.|++...++..+
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 344443 4789999999999999999999999999998876533
No 415
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.62 E-value=5.1e-16 Score=141.44 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tire 403 (747)
.++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.+..++.++|++|+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 79999999999999988888889999888 99999999
Q ss_pred HHhc
Q 004513 404 NIAY 407 (747)
Q Consensus 404 Ni~~ 407 (747)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=1.6e-15 Score=160.68 Aligned_cols=142 Identities=16% Similarity=0.276 Sum_probs=105.1
Q ss_pred eEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCC-HHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHH
Q 004513 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQI 416 (747)
Q Consensus 338 e~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~-~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i 416 (747)
+-++|+||+|||||||+++|.|++.|.+|+|.++|.++..++ ..+++..++++||...--..++.||. .+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~------~k--- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC------PK--- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc------hH---
Confidence 678999999999999999999999999999999999998764 45677788999997533234555541 01
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q 004513 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR 496 (747)
Q Consensus 417 ~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~ 496 (747)
..+ ...++|| .+|+++|+|||++ ...+...++.+..+.
T Consensus 183 -----~~~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 183 -----AEG-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGV 220 (270)
T ss_pred -----HHH-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCC
Confidence 101 1444555 4999999999974 233444445455789
Q ss_pred eEEEEeeCcch--h------------hcCCEEEEEeCceEeEecChHHHh
Q 004513 497 STIIIARRLSL--I------------RNADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 497 t~I~itH~l~~--i------------~~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
|+|++||..+. + ..+||+++|++|+ ..|+++++.
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997544 3 3389999999887 677766553
No 417
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.3e-15 Score=164.15 Aligned_cols=198 Identities=24% Similarity=0.352 Sum_probs=140.2
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhc--CCCCCCceEEECCeecCCCCHHHhhc
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER--FYDPTLGEVLLDGENIKNLKLEWLRS 385 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g--~~~p~~G~I~i~G~~i~~~~~~~lr~ 385 (747)
+|.++|.+.+-. +...+.|-||.|-.|..+|+|||||-|||||++.|.. +--|..=.|+++.
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCE------------- 327 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCE------------- 327 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeee-------------
Confidence 478888887763 3457889999999999999999999999999999873 2223333344433
Q ss_pred ceEEEeccCccccccHHHHHh---------------------cCCCCCHHHHHHHH---HHHH-------HHHHHHhccc
Q 004513 386 QIGLVTQEPALLSLSIRDNIA---------------------YGRDATLDQIEEAA---KIAH-------AHTFISSLEK 434 (747)
Q Consensus 386 ~i~~v~Q~~~lf~~TireNi~---------------------~g~~~~~~~i~~a~---~~~~-------l~~~i~~lp~ 434 (747)
|+...-+.|.-+-+. -|...-.+++.++. ++.+ +...+..|
T Consensus 328 ------QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL-- 399 (807)
T KOG0066|consen 328 ------QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL-- 399 (807)
T ss_pred ------eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc--
Confidence 333322222211111 11111122333322 2211 22223333
Q ss_pred cccccccCCCC-CCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc-CC
Q 004513 435 GYETQVGRAGL-ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-AD 512 (747)
Q Consensus 435 G~~t~vge~g~-~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~-aD 512 (747)
|++...-++.. .+|||-|-||+|||||+-.|-+|.|||||..||-.....+.+.+..+ .+|.++|+|+-.++.. |.
T Consensus 400 GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 400 GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHH
Confidence 67777777764 59999999999999999999999999999999999888888888887 4799999999999987 99
Q ss_pred EEEEEeCceE-eEecChHHH
Q 004513 513 YIAVMDEGRL-FEMGTHDEL 531 (747)
Q Consensus 513 ~I~vl~~G~i-ve~Gt~~eL 531 (747)
.|+.|++-++ ...|+|.-.
T Consensus 478 dIIHLD~qkLhyYrGNY~~F 497 (807)
T KOG0066|consen 478 DIIHLDNQKLHYYRGNYTLF 497 (807)
T ss_pred HHhhhhhhhhhhhcchHHHH
Confidence 9999999887 466776544
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=1.4e-14 Score=147.62 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=98.5
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccc-cccH
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSI 401 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti 401 (747)
+..+.+|++|++++|++++|.||||+||||+++++.++. +..++|+-. |..+ ..++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~v--pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFV--PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCc--chhhcCccC
Confidence 346899999999999999999999999999999998873 222344211 3322 3466
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHH
Q 004513 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (747)
Q Consensus 402 reNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~ 481 (747)
.|||...-. ....+.++..++|+|+||+ ..+-++..+|+++|||||++++|+..
T Consensus 72 ~d~I~~~~~-------------------------~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 72 FNRLLSRLS-------------------------NDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred hhheeEecC-------------------------CccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 677642211 1111234456789999975 45555788999999999999999976
Q ss_pred HHHH-HHHHHHhc-CCCeEEEEeeCcchhhc
Q 004513 482 ERAV-QEALDLLM-LGRSTIIIARRLSLIRN 510 (747)
Q Consensus 482 ~~~i-~~~i~~~~-~~~t~I~itH~l~~i~~ 510 (747)
...+ .+.++.+. .+.++|++||..+.++.
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 5544 34444443 47899999999887765
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.54 E-value=2.9e-14 Score=154.01 Aligned_cols=193 Identities=17% Similarity=0.255 Sum_probs=139.8
Q ss_pred EEecCCCCCCceeeeeEEecCCe-----EEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEE
Q 004513 316 FSYLSRPEIPILSGFYLTVPAKK-----AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390 (747)
Q Consensus 316 f~y~~~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v 390 (747)
+.||+ .+..+.+..|.|+.|+ ++..+|.||.||||++++|+|.++|++|. ++..+ .|+|=
T Consensus 343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 45663 3456889999999985 68899999999999999999999998652 23322 48888
Q ss_pred eccCc-cccccHHHHHhcC-C-CC-CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCC
Q 004513 391 TQEPA-LLSLSIRDNIAYG-R-DA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (747)
Q Consensus 391 ~Q~~~-lf~~TireNi~~g-~-~~-~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~ 466 (747)
||.-. =|.+|||+-+.-- + .+ ...-+.++.+-. -.+..++....+||||+.||+|||-+|-+.++
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL-----------~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPL-----------QIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhh-----------hHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 88643 4779999865310 1 11 122222333322 23344556677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEeeCcchhhc-CCEEEEEeCc--eEeEecChHHHhhc
Q 004513 467 ILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEG--RLFEMGTHDELLAT 534 (747)
Q Consensus 467 illLDEpTsaLD~~~~~~i~~~i~~~--~~~~t~I~itH~l~~i~~-aD~I~vl~~G--~ive~Gt~~eL~~~ 534 (747)
+|+.|||.+-||.+.+..--..++++ ..++|-.+|-|++-.... |||++|.+.- .....-+++.|++.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~g 549 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAG 549 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHH
Confidence 99999999999999888776666664 367899999999877754 9999998642 23333445555543
No 420
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=2.3e-14 Score=181.65 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=102.0
Q ss_pred cccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHH------HHHHhcccccCCCEEE
Q 004513 396 LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI------KLSIARAVLLNPSILL 469 (747)
Q Consensus 396 lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQ------RialARAll~~p~ill 469 (747)
.|+||++|||.+-.+++++ +.+++.++.+.++..+|.| +|.++.+| .||||||| |++||||++.+|+||+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 5899999999993355555 6888889999999999999 99999886 89999999 9999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEeeCcchhhc------CCEEEEE
Q 004513 470 LDEVTGGLDFEAERAVQEALDLLM------LGRSTIIIARRLSLIRN------ADYIAVM 517 (747)
Q Consensus 470 LDEpTsaLD~~~~~~i~~~i~~~~------~~~t~I~itH~l~~i~~------aD~I~vl 517 (747)
|||||++||+.+...+.+.|..+. .+.|+|+|||++..+.. ||+.+-+
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999999888876652 36799999999987753 5665544
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.53 E-value=1.8e-14 Score=148.20 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=104.4
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccc-cccHH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIR 402 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Tir 402 (747)
..+.+|++|++++ ++++|+|||||||||+++.+.+..-. |. .|..+ +. .+.+++++.| +| ..+++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---PA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---cc--ccceecceee---EeccCCch
Confidence 3578999999987 99999999999999999999764321 10 12111 11 1235777765 44 35777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCC---CCCCCH
Q 004513 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV---TGGLDF 479 (747)
Q Consensus 403 eNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEp---TsaLD~ 479 (747)
||+..|...- .. +..+++-+-+...+|+++||||| |+++|+
T Consensus 84 ~~ls~g~s~f------~~------------------------------e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~ 127 (216)
T cd03284 84 DDLAGGRSTF------MV------------------------------EMVETANILNNATERSLVLLDEIGRGTSTYDG 127 (216)
T ss_pred hhhccCcchH------HH------------------------------HHHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Confidence 8776653100 00 11222222222579999999999 999998
Q ss_pred HHH-HHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCceEeEecChHHH
Q 004513 480 EAE-RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 480 ~~~-~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL 531 (747)
... ..+.+.+.+. .+.|+|++||+.+....+|++.-+++|++...++.+++
T Consensus 128 ~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 128 LSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 652 3344444332 37899999999877777888888899998877665555
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.50 E-value=3.7e-13 Score=148.79 Aligned_cols=76 Identities=26% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHhcccc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhc---CC
Q 004513 445 LALTEEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN---AD 512 (747)
Q Consensus 445 ~~LSGGQkQRialARAll---------~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~---aD 512 (747)
..+|+||+|+++||+++. ++|+|||||||+++||+..+..+.+.+... +..++++||+.+.+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 468999999999999885 799999999999999999999998888653 4578888898766543 46
Q ss_pred EEEEEeCceE
Q 004513 513 YIAVMDEGRL 522 (747)
Q Consensus 513 ~I~vl~~G~i 522 (747)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.49 E-value=4.3e-14 Score=145.16 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHhc----ccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEE
Q 004513 446 ALTEEQKIKLSIAR----AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 446 ~LSGGQkQRialAR----All~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
.||||||-+++||- +-+.++|++||||+.++||....+.+.+.|++..++.-+|++||+-.....||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999873 3357899999999999999999999999999988888999999999999999998876
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.42 E-value=1.6e-13 Score=159.97 Aligned_cols=91 Identities=24% Similarity=0.433 Sum_probs=82.1
Q ss_pred hccccccccccCCC------CCCCHHHHHHHHHhcccc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhc
Q 004513 431 SLEKGYETQVGRAG------LALTEEQKIKLSIARAVL----------LNPSILLLDEVT-GGLDFEAERAVQEALDLLM 493 (747)
Q Consensus 431 ~lp~G~~t~vge~g------~~LSGGQkQRialARAll----------~~p~illLDEpT-saLD~~~~~~i~~~i~~~~ 493 (747)
.+|+++++.+++.| .+||||||||++||||++ .+|++||||||| ++||+.....+.+.|+.+
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~- 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL- 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-
Confidence 56888889998888 689999999999999887 599999999998 789999999999999988
Q ss_pred CCCeEEEEeeCcchhhcCCEEEEEeC-ceE
Q 004513 494 LGRSTIIIARRLSLIRNADYIAVMDE-GRL 522 (747)
Q Consensus 494 ~~~t~I~itH~l~~i~~aD~I~vl~~-G~i 522 (747)
++.|+|+|||+.+....||++++|++ |+.
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 78899999999888888999999986 554
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.37 E-value=1e-11 Score=139.74 Aligned_cols=176 Identities=18% Similarity=0.258 Sum_probs=119.8
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECC---eecCC-----CCHHHhhcceEEEec--
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG---ENIKN-----LKLEWLRSQIGLVTQ-- 392 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G---~~i~~-----~~~~~lr~~i~~v~Q-- 392 (747)
+..+++++ |++.+|++++|+|+||+|||||+++|.|+++|+.|.|.+.| .++.+ ++...+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 34689999 99999999999999999999999999999999999999954 44443 344557788888864
Q ss_pred cCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcccccccccc-CCCCCCCHHHHHH-HHHhcccccCCCEEEE
Q 004513 393 EPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVG-RAGLALTEEQKIK-LSIARAVLLNPSILLL 470 (747)
Q Consensus 393 ~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vg-e~g~~LSGGQkQR-ialARAll~~p~illL 470 (747)
+|. -.++..+.-.+.+.+++.. .|.|-.+= +.-.++ -|-|| |+++ +.+|+
T Consensus 224 ~~~-----------------~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~--A~A~rEisl~---~ge~P---- 275 (438)
T PRK07721 224 QPA-----------------LMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRV--AMAQREIGLA---VGEPP---- 275 (438)
T ss_pred CCH-----------------HHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHH--HHHHHHHHHh---cCCCC----
Confidence 332 1222223233333333332 23332211 000000 01111 2221 12232
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEeeCcchhhcCCEEEEEeCceEeEecChHH
Q 004513 471 DEVTGGLDFEAERAVQEALDLLM---LGR-----STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530 (747)
Q Consensus 471 DEpTsaLD~~~~~~i~~~i~~~~---~~~-----t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~e 530 (747)
.|+|+|+.....+.+.+++.. .|. |+++.+|+++. ..||++.+|.+|+|+..++..+
T Consensus 276 --~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 --TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred --ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999999988887765 464 89999999985 7799999999999999988655
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.36 E-value=2.7e-12 Score=131.91 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=92.6
Q ss_pred CceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHh--cCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCcccc--cc
Q 004513 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME--RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS--LS 400 (747)
Q Consensus 325 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~--g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~--~T 400 (747)
.|-+|+++.=..+.+++|+||||+||||+++.+. ..+ +..|...... .-.++|..|...-+. .|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 3445666542223899999999999999999998 333 5556655432 125788888654332 23
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHH
Q 004513 401 IRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (747)
Q Consensus 401 ireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~ 480 (747)
+.+++ .|. .-+-||+++|++++.+|+++|||||++|+|+.
T Consensus 85 i~~~~-------------------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQ-------------------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhcc-------------------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 33332 111 11569999999999999999999999999997
Q ss_pred HHH-HHHHHHHHhcC----CCeEEEEeeCcchhhcC
Q 004513 481 AER-AVQEALDLLML----GRSTIIIARRLSLIRNA 511 (747)
Q Consensus 481 ~~~-~i~~~i~~~~~----~~t~I~itH~l~~i~~a 511 (747)
... .+...++.+.+ +.++|++||.++.++..
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 544 44556666532 24899999999887654
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=9.9e-13 Score=134.57 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=86.6
Q ss_pred EEEEeCCCCCCHHHHH-HhHhcCCCC-----------------CCceEEECCeecCCCC-HHHhhcceEEEeccC-c--c
Q 004513 339 AVALVGRNGSGKSSII-PLMERFYDP-----------------TLGEVLLDGENIKNLK-LEWLRSQIGLVTQEP-A--L 396 (747)
Q Consensus 339 ~vaivG~sGsGKSTLl-~ll~g~~~p-----------------~~G~I~i~G~~i~~~~-~~~lr~~i~~v~Q~~-~--l 396 (747)
+++|+|++|||||||+ +++.|.+++ ..|.+.+++.|+.... ...+| .+|+.+.. . .
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 6899999999999999 688888764 4688888888875422 11222 22222221 1 2
Q ss_pred cccc-----------------HHHHHh---cCCCCCH--HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHH
Q 004513 397 LSLS-----------------IRDNIA---YGRDATL--DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (747)
Q Consensus 397 f~~T-----------------ireNi~---~g~~~~~--~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQR 454 (747)
|+.| ..+|+. .|+..+. .++. .+.. .+.....-.+-.. ...+-.|-|+++
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~~---~~~~~~~~~~~e~---Sa~~~~~v~~~f 160 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQI---TFHRKKNLQYYDI---SAKSNYNFEKPF 160 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHHH---HHHHHcCCEEEEE---eCCCCCCHHHHH
Confidence 2322 112321 2332221 1110 0111 1111111111100 111112339999
Q ss_pred HHHhcccccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 004513 455 LSIARAVLLNPSILLLDEVT-----GGLDFEAERAVQEALDLLM 493 (747)
Q Consensus 455 ialARAll~~p~illLDEpT-----saLD~~~~~~i~~~i~~~~ 493 (747)
+.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 161 ~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 161 LWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999998763
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=1.1e-12 Score=131.69 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEeeCcchhhcCCEEEEEe
Q 004513 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLM--LGRSTIIIARRLSLIRNADYIAVMD 518 (747)
Q Consensus 442 e~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i-~~~i~~~~--~~~t~I~itH~l~~i~~aD~I~vl~ 518 (747)
++..++|+|++|...+++. +.+|+++|+|||++++|+.....+ ...++.+. .+.++|++||..+..+.||+---++
T Consensus 57 ~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~ 135 (185)
T smart00534 57 QGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVR 135 (185)
T ss_pred ccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccce
Confidence 3445788888874444433 349999999999999999977765 44555543 3789999999997666677533344
Q ss_pred CceE
Q 004513 519 EGRL 522 (747)
Q Consensus 519 ~G~i 522 (747)
++++
T Consensus 136 ~~~~ 139 (185)
T smart00534 136 NLHM 139 (185)
T ss_pred EEEE
Confidence 4444
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.26 E-value=8.4e-12 Score=145.72 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHhcccccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCc
Q 004513 445 LALTEEQKIKLSIARAVLLN----PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (747)
Q Consensus 445 ~~LSGGQkQRialARAll~~----p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G 520 (747)
..|||||+||++||||++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 36899999999999999875 69999999999999999999999999887889999999999999899999999987
Q ss_pred e
Q 004513 521 R 521 (747)
Q Consensus 521 ~ 521 (747)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.25 E-value=6.6e-12 Score=150.49 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=97.7
Q ss_pred cEEEEeEEEEecCCCCCCcee-----eeeEEecCC-eEEEEeCCCCCCHHHHHHhHhcC-CCCCCceEEECCeecCCCCH
Q 004513 308 NIEFRNVYFSYLSRPEIPILS-----GFYLTVPAK-KAVALVGRNGSGKSSIIPLMERF-YDPTLGEVLLDGENIKNLKL 380 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~-----~isl~i~~G-e~vaivG~sGsGKSTLl~ll~g~-~~p~~G~I~i~G~~i~~~~~ 380 (747)
.+.++++.. |.++ .+++++.+| ++++|+||||+||||+++++.+. +-+..|
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------- 352 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------- 352 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------
Confidence 477776643 3343 378888877 99999999999999999999986 233222
Q ss_pred HHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcc
Q 004513 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (747)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARA 460 (747)
.+||..... ...+.+++.. ...++ -.+.++-.+||+|++++..|+++
T Consensus 353 -------~~Vpa~~~~-~~~~~d~i~~--~i~~~-----------------------~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 353 -------IPIPANEHS-EIPYFEEIFA--DIGDE-----------------------QSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred -------CCccCCccc-cccchhheee--ecChH-----------------------hHHhhhhhHHHHHHHHHHHHHHh
Confidence 145544321 0112222211 11110 01122345689999999999998
Q ss_pred cccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc-CCCeEEEEeeCcch
Q 004513 461 VLLNPSILLLDEVTGGLDFEAERAV-QEALDLLM-LGRSTIIIARRLSL 507 (747)
Q Consensus 461 ll~~p~illLDEpTsaLD~~~~~~i-~~~i~~~~-~~~t~I~itH~l~~ 507 (747)
+ .+|+++|||||++|+|+.....+ ...++.+. .+.++|++||..+.
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 7 78999999999999999988877 44555543 57899999998754
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.23 E-value=1.8e-11 Score=142.24 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHhccccc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeCce
Q 004513 446 ALTEEQKIKLSIARAVLL----NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (747)
Q Consensus 446 ~LSGGQkQRialARAll~----~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~G~ 521 (747)
.|||||+|||+|||+++. +|++||||||++|||+.+...+.+.++++.+++|+|+|||.++.+..||+++++.++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999996 6899999999999999999999999999877899999999999998999999998764
No 432
>PRK14079 recF recombination protein F; Provisional
Probab=99.21 E-value=1.3e-10 Score=127.96 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHhcccc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEE
Q 004513 446 ALTEEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (747)
Q Consensus 446 ~LSGGQkQRialARAll---------~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~v 516 (747)
-+|+||+++++||++|. .+|+|+|||||+|.||+.....+.+.|.... . ++|| -.+.-..||++++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q--~~it-~t~~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--Q--AIVA-GTEAPPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--c--EEEE-cCCCCCCCceEEE
Confidence 47999999999999998 8999999999999999999999988875432 2 3444 2234456999999
Q ss_pred EeCceEeEec
Q 004513 517 MDEGRLFEMG 526 (747)
Q Consensus 517 l~~G~ive~G 526 (747)
+++|++.-..
T Consensus 338 ~~~~~~~~~~ 347 (349)
T PRK14079 338 IEAGVFTPEA 347 (349)
T ss_pred EeccEecCCC
Confidence 9999886443
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=8.4e-11 Score=121.50 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=86.8
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhc-CCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER-FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g-~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tir 402 (747)
..+.+|++|.+.+|++++|.||||+||||+++.+.+ .+.+..|.....- .. +++|..|=-. .....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~----------~~~~~~~i~~--~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA----------TLSIFDSVLT--RMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce----------EEeccceEEE--EecCc
Confidence 468899999999999999999999999999999999 7777888764432 11 3444333211 11223
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHH
Q 004513 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482 (747)
Q Consensus 403 eNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~ 482 (747)
|++.-+...-..++.+ ++-+-.-..+++++|||||.++.|+...
T Consensus 85 d~~~~~~StF~~e~~~------------------------------------~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQHGMSTFMVELSE------------------------------------TSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cccccccchHHHHHHH------------------------------------HHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 3332222111112211 1111112357999999999888876655
Q ss_pred HHH-HHHHHHhc--CCCeEEEEeeCcchhhc
Q 004513 483 RAV-QEALDLLM--LGRSTIIIARRLSLIRN 510 (747)
Q Consensus 483 ~~i-~~~i~~~~--~~~t~I~itH~l~~i~~ 510 (747)
..+ ...++.+. .+.|+|++||+.+....
T Consensus 129 ~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 129 IAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 543 33444433 36899999999887543
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.17 E-value=2.7e-11 Score=120.19 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=65.4
Q ss_pred CCCCCCCHHHHHHHHHhcccccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDE--VTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 442 e~g~~LSGGQkQRialARAll~~p~illLDE--pTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
.....|||+++-++.+++..+++|+++++|| |+..+|+...+.+.+++ ..++++|+++|.-.....+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCC
Confidence 3345699999999999999999999999999 55566655555555555 347899999998655567999999999
Q ss_pred ceEeEe
Q 004513 520 GRLFEM 525 (747)
Q Consensus 520 G~ive~ 525 (747)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999876
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.16 E-value=5.3e-11 Score=129.13 Aligned_cols=171 Identities=20% Similarity=0.300 Sum_probs=114.6
Q ss_pred cCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEE-----------ECCeecCCCCH----HHhhc--ceEEEeccCccc
Q 004513 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-----------LDGENIKNLKL----EWLRS--QIGLVTQEPALL 397 (747)
Q Consensus 335 ~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------i~G~~i~~~~~----~~lr~--~i~~v~Q~~~lf 397 (747)
++|+..++||.||-||||-++.|+|-.+|.-|.-- +-|..+.++-. +.++. ..-||-|-|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999999876531 11111111110 01110 011333333333
Q ss_pred cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCC
Q 004513 398 SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (747)
Q Consensus 398 ~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaL 477 (747)
.+++.+++.--. +.+...++++...|. .........||||+-||.+||.+.++++|++++|||.|-|
T Consensus 178 k~~v~~~l~~~~--~r~~~~~~~~~~~L~-----------~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 178 KGTVGSLLDRKD--ERDNKEEVCDQLDLN-----------NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHHHHh--hcccHHHHHHHHHHh-----------hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 455555543211 111222333332222 2222334579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh-cCCCeEEEEeeCcchhhc-CCEEEEEe
Q 004513 478 DFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMD 518 (747)
Q Consensus 478 D~~~~~~i~~~i~~~-~~~~t~I~itH~l~~i~~-aD~I~vl~ 518 (747)
|...+-.--..|+.+ ..++-+|+|-|+|+.+.. .|-|.++-
T Consensus 245 DVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred hHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999888877788776 467899999999999875 88888874
No 436
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=2.1e-10 Score=133.04 Aligned_cols=137 Identities=26% Similarity=0.345 Sum_probs=101.7
Q ss_pred cccHHHHHhcCCCCC--HHH---HHHHHHHH-HHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccC--CCEEE
Q 004513 398 SLSIRDNIAYGRDAT--LDQ---IEEAAKIA-HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN--PSILL 469 (747)
Q Consensus 398 ~~TireNi~~g~~~~--~~~---i~~a~~~~-~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~--p~ill 469 (747)
..+|+|-+.|..... +.+ ...+++.. .--.|+...--||-|. .....+|||||.|||-||..+-.. -=+|+
T Consensus 428 ~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYV 506 (935)
T COG0178 428 EMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYV 506 (935)
T ss_pred hccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEE
Confidence 356777666655322 222 12233321 1123444554455554 666789999999999999999876 35789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEE------eCceEeEecChHHHhhcc
Q 004513 470 LDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMGTHDELLATG 535 (747)
Q Consensus 470 LDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl------~~G~ive~Gt~~eL~~~~ 535 (747)
||||+.||=+.--.++.+.|+.+. .|.|+|+|-|+.++++.||+|+=| ..|+|+.+|+++|+++..
T Consensus 507 LDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 507 LDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 999999999986666667776664 689999999999999999999988 578999999999999875
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.13 E-value=3.1e-10 Score=118.06 Aligned_cols=157 Identities=11% Similarity=0.161 Sum_probs=88.1
Q ss_pred EEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHH-HHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI-IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 309 I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL-l~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
+.++++...++. -+++|+++.|+|++||||||+ ++.+.++.++....
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~-------------------- 55 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSV-------------------- 55 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcE--------------------
Confidence 556666665531 279999999999999999999 68888887654333
Q ss_pred EEEeccCccccccHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc----
Q 004513 388 GLVTQEPALLSLSIRDNI-AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL---- 462 (747)
Q Consensus 388 ~~v~Q~~~lf~~TireNi-~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll---- 462 (747)
.|++.+-. ...+.++. .+|.+. ++ .... ..+. .+. -...+|+++.++-.+++.+-
T Consensus 56 ~yi~~e~~--~~~~~~~~~~~g~~~--~~---~~~~----~~l~--------~~~-~~~~~~~~~~~~~~l~~il~~~~~ 115 (230)
T PRK08533 56 SYVSTQLT--TTEFIKQMMSLGYDI--NK---KLIS----GKLL--------YIP-VYPLLSGNSEKRKFLKKLMNTRRF 115 (230)
T ss_pred EEEeCCCC--HHHHHHHHHHhCCch--HH---Hhhc----CcEE--------EEE-ecccccChHHHHHHHHHHHHHHHh
Confidence 33332110 01111111 122111 11 0000 0000 000 00124555554444444332
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhcC-CCeEEEEeeCcchh--------hc-CCEEEEEe
Q 004513 463 LNPSILLLDEVTGGL----DFEAERAVQEALDLLML-GRSTIIIARRLSLI--------RN-ADYIAVMD 518 (747)
Q Consensus 463 ~~p~illLDEpTsaL----D~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i--------~~-aD~I~vl~ 518 (747)
.+|+++++||||+++ |+...+.+.+.++.+.+ +.| +++||+...+ .. ||-|+.|+
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~t-vi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKV-IILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCE-EEEEecccccccccceeEEEeeeEEEEEE
Confidence 379999999999999 77777778888876643 564 4556665432 22 57777775
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.10 E-value=1.2e-10 Score=126.34 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=99.9
Q ss_pred eeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC
Q 004513 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409 (747)
Q Consensus 330 isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~ 409 (747)
+++.++.|+.++|+||+|||||||+++|++++++..|.|.+. |..++.... ++.+.++.+... + +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-------~----~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-------Q----GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------C----Cc
Confidence 557788999999999999999999999999999999988885 344433221 222332222100 0 00
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 004513 410 -DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488 (747)
Q Consensus 410 -~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~ 488 (747)
..+ ..=.++++|-.+|+++++|||.+ . .+.+.
T Consensus 203 ~~~~----------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~---~----e~~~~ 235 (308)
T TIGR02788 203 AKVT----------------------------------------PKDLLQSCLRMRPDRIILGELRG---D----EAFDF 235 (308)
T ss_pred CccC----------------------------------------HHHHHHHHhcCCCCeEEEeccCC---H----HHHHH
Confidence 001 11234566778999999999996 2 23445
Q ss_pred HHHhcCCC-eEEEEeeCcchhhcCCEEEEEeCceEeEecChHHHh
Q 004513 489 LDLLMLGR-STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (747)
Q Consensus 489 i~~~~~~~-t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL~ 532 (747)
++....|. +++.++|..+.....||++.|..|++...|.+.+.+
T Consensus 236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 55554555 568888999977779999999999999989888776
No 439
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.09 E-value=1.4e-10 Score=139.43 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=93.8
Q ss_pred eEEec-CCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceE-EEeccCccccccHHHHHhcC
Q 004513 331 YLTVP-AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG-LVTQEPALLSLSIRDNIAYG 408 (747)
Q Consensus 331 sl~i~-~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~-~v~Q~~~lf~~TireNi~~g 408 (747)
++.+. .+.++.|.|||++||||+++.+... .+-.++| +||-+.. ...++.++|...
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~---------------------~~maq~G~~vpa~~~-~~i~~~~~i~~~ 377 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLA---------------------ALMAKSGLPIPANEP-SEIPVFKEIFAD 377 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHH---------------------HHHHHhCCCcccCCC-ccccccceEEEe
Confidence 44444 4578999999999999999998422 1111333 4444320 012233333210
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHH-
Q 004513 409 RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE- 487 (747)
Q Consensus 409 ~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~- 487 (747)
-|.+..+..+-.++|+||+|++.|+|++ .+|+++|||||++|+|+.....+..
T Consensus 378 -------------------------ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~a 431 (782)
T PRK00409 378 -------------------------IGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAIS 431 (782)
T ss_pred -------------------------cCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHH
Confidence 0222222344567999999999999999 8999999999999999998877754
Q ss_pred HHHHh-cCCCeEEEEeeCcchhhc-CCEEEEEeCceEe
Q 004513 488 ALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (747)
Q Consensus 488 ~i~~~-~~~~t~I~itH~l~~i~~-aD~I~vl~~G~iv 523 (747)
.++.+ ..+.++|++||..+.... +|+..++ ++.+.
T Consensus 432 ile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~ 468 (782)
T PRK00409 432 ILEYLRKRGAKIIATTHYKELKALMYNREGVE-NASVE 468 (782)
T ss_pred HHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEE
Confidence 45444 357899999999877654 4444433 44443
No 440
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=5e-10 Score=139.74 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHhccccc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-
Q 004513 443 AGLALTEEQKIKLSIARAVLL----------NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN- 510 (747)
Q Consensus 443 ~g~~LSGGQkQRialARAll~----------~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~- 510 (747)
...+|||||++|++||+||.. +|++|||||||++||+.+...+.++|+.+. .|++|++|||..+....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 457899999999999999985 799999999999999999999999998764 57899999999998865
Q ss_pred CCEEEEEeCc
Q 004513 511 ADYIAVMDEG 520 (747)
Q Consensus 511 aD~I~vl~~G 520 (747)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999764
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.02 E-value=5.5e-10 Score=137.51 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=66.7
Q ss_pred CCCCCCHHHHHHHHH------hcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C--C-CeEEEEeeCcchhhcCC
Q 004513 443 AGLALTEEQKIKLSI------ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L--G-RSTIIIARRLSLIRNAD 512 (747)
Q Consensus 443 ~g~~LSGGQkQRial------ARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~--~-~t~I~itH~l~~i~~aD 512 (747)
.+..||||||+|++| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999998888876432 2 2 48999999999998899
Q ss_pred EEEEEe
Q 004513 513 YIAVMD 518 (747)
Q Consensus 513 ~I~vl~ 518 (747)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 442
>PRK03918 chromosome segregation protein; Provisional
Probab=99.01 E-value=5.2e-10 Score=137.42 Aligned_cols=75 Identities=25% Similarity=0.300 Sum_probs=66.5
Q ss_pred CCCCCHHHHH------HHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEE
Q 004513 444 GLALTEEQKI------KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAV 516 (747)
Q Consensus 444 g~~LSGGQkQ------RialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~v 516 (747)
...|||||+| |+||||+++.+|+++||||||++||+.....+.+.|+.+. .+.|+|+|||+.+....||+|++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence 3579999999 5666778999999999999999999999999999887764 35799999999988888999999
Q ss_pred Ee
Q 004513 517 MD 518 (747)
Q Consensus 517 l~ 518 (747)
|+
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 97
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.98 E-value=1.6e-09 Score=107.86 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=63.0
Q ss_pred cccccccCCCCCCCHHHHH------HHHHhcccccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCCeEEEEeeC
Q 004513 435 GYETQVGRAGLALTEEQKI------KLSIARAVLLNPSILLLDEVTGGLD---FEAERAVQEALDLLM-LGRSTIIIARR 504 (747)
Q Consensus 435 G~~t~vge~g~~LSGGQkQ------RialARAll~~p~illLDEpTsaLD---~~~~~~i~~~i~~~~-~~~t~I~itH~ 504 (747)
|....+......+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444555666788999998 4444444567999999999999999 666777777666553 47899999998
Q ss_pred cch---------hh-cCCEEEEEeC
Q 004513 505 LSL---------IR-NADYIAVMDE 519 (747)
Q Consensus 505 l~~---------i~-~aD~I~vl~~ 519 (747)
... +. .||.|+.|+.
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEEE
Confidence 754 44 3899999863
No 444
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.95 E-value=6.8e-10 Score=139.63 Aligned_cols=75 Identities=19% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHhccc----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEE
Q 004513 443 AGLALTEEQKIKLSIARAV----LLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 443 ~g~~LSGGQkQRialARAl----l~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
....||||||||++|||++ +++|+++||||||++||+.....+.+.|+.+.++.++|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4567999999999999998 57889999999999999999999999998887778999999999998889999765
No 445
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.95 E-value=4.2e-10 Score=125.94 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=55.7
Q ss_pred CceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCc-eEEECCeecCCCCHHHhhcceEEEeccC
Q 004513 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDGENIKNLKLEWLRSQIGLVTQEP 394 (747)
Q Consensus 325 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G-~I~i~G~~i~~~~~~~lr~~i~~v~Q~~ 394 (747)
.+|++||++|++||+++|+||||||||||++ .|+.+|++| +|.++|.++...+...++. +-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5799999999999999999999999999999 677888888 7999999998766544321 11777754
No 446
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.91 E-value=8.4e-09 Score=125.37 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=57.8
Q ss_pred cccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEeeCcchh----------hcCCEEEEEeCceEeEecC
Q 004513 461 VLLNPSILLLDEVTGGL-DFEAERAVQEALDLLM-LGRSTIIIARRLSLI----------RNADYIAVMDEGRLFEMGT 527 (747)
Q Consensus 461 ll~~p~illLDEpTsaL-D~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i----------~~aD~I~vl~~G~ive~Gt 527 (747)
+..+|+++++|||+.+| |+...+.+.+.++... .+.++|++||.++.+ ..||++++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 36799999999999999 6899999999887764 578999999999776 4699999999999877664
No 447
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.91 E-value=3.8e-09 Score=107.24 Aligned_cols=64 Identities=28% Similarity=0.266 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHhcccccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchh
Q 004513 445 LALTEEQKIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLI 508 (747)
Q Consensus 445 ~~LSGGQkQRialARAll~~p---~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i 508 (747)
..+|.|+||.+.|+-+++..+ .++++|||-++|.|...+.+.+.++...+ +.-+|+.||....+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999988888766 89999999999999999999999987765 78899999987654
No 448
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.91 E-value=3.7e-09 Score=109.05 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=84.2
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccc-cccHH
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIR 402 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Tir 402 (747)
..+-+|++|++++|++++|.||||+||||+++.+....-..+ -|..+. .+ +.+++++ ..+| .....
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~vp---a~--~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDVP---AK--SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCccC---cc--ccEeccc---cEEEEecCcc
Confidence 468899999999999999999999999999998876422110 010000 00 0012221 1122 23344
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHH
Q 004513 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482 (747)
Q Consensus 403 eNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~ 482 (747)
|++..+...-..++.+ ++-.-....+|.++|||||.+|.|+...
T Consensus 84 d~~~~~~StF~~e~~~------------------------------------~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGESTFMVELSE------------------------------------TANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcchHHHHHHH------------------------------------HHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 4444333211122221 1111111357899999999999999987
Q ss_pred HHHHHH-HHHhcC--CCeEEEEeeCcchhhc
Q 004513 483 RAVQEA-LDLLML--GRSTIIIARRLSLIRN 510 (747)
Q Consensus 483 ~~i~~~-i~~~~~--~~t~I~itH~l~~i~~ 510 (747)
..+..+ ++.+.+ +.++|++||..+.+..
T Consensus 128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 777665 555543 7899999999887654
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.90 E-value=3.5e-09 Score=118.68 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=118.4
Q ss_pred cEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcce
Q 004513 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (747)
Q Consensus 308 ~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i 387 (747)
.++-++++..|.. +..+++++ |++.+|++++|+|++|+|||||+++|+|..+|+.|.|.+.|...
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 3566777777742 45688885 99999999999999999999999999999999988887766322
Q ss_pred EEEeccCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccc-----
Q 004513 388 GLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL----- 462 (747)
Q Consensus 388 ~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll----- 462 (747)
.+++|.+.. .+...++. .|.+=-.-.+-|.|+|+|++.+.+.+
T Consensus 195 -----------~ev~e~~~~-----------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 195 -----------REVKDFIRK-----------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred -----------ccHHHHHHH-----------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233333321 11111110 11222345678999999999988877
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhcCCEEEEEeCceEeEecCh
Q 004513 463 --LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (747)
Q Consensus 463 --~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~ 528 (747)
.++-++++||+|...|+. +.|-..+.+.. .|.+..+.+|..+.++.|-+ .++|.|...++.
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 788999999999999997 45544554443 46777777885444555544 478888776653
No 450
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.88 E-value=1.5e-08 Score=112.04 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEEEecCCCCCCcee-----------eeeEEecCCeEEEEeCC
Q 004513 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS-----------GFYLTVPAKKAVALVGR 345 (747)
Q Consensus 277 ~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f~y~~~~~~~vL~-----------~isl~i~~Ge~vaivG~ 345 (747)
+..+.+|++++++.++.. +..+....+.++|+||+|.||. +..+|+ |+++.|.+|+.++||||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn----~~~~e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 103 SPKEGERYFALLKVESVN----GDDPEKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred ccccHhHHHHHhCCCccC----CCCccccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 446789999999876532 1112234578999999999985 347897 99999999999999999
Q ss_pred CCCCHHHHHHhHhcCCCCC
Q 004513 346 NGSGKSSIIPLMERFYDPT 364 (747)
Q Consensus 346 sGsGKSTLl~ll~g~~~p~ 364 (747)
+|||||||+++|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999987643
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.88 E-value=1.3e-08 Score=97.71 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=77.4
Q ss_pred EEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHHH
Q 004513 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEE 418 (747)
Q Consensus 339 ~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~~ 418 (747)
+++|.|++|+||||+++.+++...+..|.|.+. +++...- ...++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~-------------------~~e~~~~--~~~~~~~~----------- 48 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV-------------------DIEEEIE--ELTERLIG----------- 48 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE-------------------ECCcchH--HHHHHHhh-----------
Confidence 368999999999999999999887755555443 3322110 01111100
Q ss_pred HHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCC----------CHHHHHHHHHH
Q 004513 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL----------DFEAERAVQEA 488 (747)
Q Consensus 419 a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaL----------D~~~~~~i~~~ 488 (747)
.. ......+ ...+.......+.++.++++.+++...+|+++++||+++-+ |....+.+.+.
T Consensus 49 ----~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 49 ----ES----LKGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred ----hh----hcccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 00 0000111 11222222334455666888999999999999999999544 44445666665
Q ss_pred HHHhc-CCCeEEEEeeCcch
Q 004513 489 LDLLM-LGRSTIIIARRLSL 507 (747)
Q Consensus 489 i~~~~-~~~t~I~itH~l~~ 507 (747)
++... .+.|+|+++|....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHhcCCceEEEEEecCCc
Confidence 55543 47899999997643
No 452
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.86 E-value=3.1e-09 Score=133.93 Aligned_cols=75 Identities=17% Similarity=0.064 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHhcccc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhhcCCEEEEEeC
Q 004513 445 LALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (747)
Q Consensus 445 ~~LSGGQkQRialARAll----~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~~aD~I~vl~~ 519 (747)
..||||||++++||++++ ++||++|||||+++||+.....+.+.|..+..+.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 479999999999999997 588999999999999999999999999888777889999999999989999987753
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.85 E-value=2.9e-09 Score=108.16 Aligned_cols=119 Identities=25% Similarity=0.344 Sum_probs=77.8
Q ss_pred EEEEeCCCCCCHHHHHHhHhcCCCCC-CceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHHHHH
Q 004513 339 AVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIE 417 (747)
Q Consensus 339 ~vaivG~sGsGKSTLl~ll~g~~~p~-~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~~i~ 417 (747)
.+.|+||+||||||+++.|++.+++. .|.|...+.++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 68999999999999999999988754 567665543331 1000 011111111
Q ss_pred HHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 004513 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497 (747)
Q Consensus 418 ~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t 497 (747)
.+|.+...++. +|++|+..+|+++++||+. |.++.. .+++....|++
T Consensus 55 ---------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~---~~l~~a~~G~~ 101 (198)
T cd01131 55 ---------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIR---LALTAAETGHL 101 (198)
T ss_pred ---------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHH---HHHHHHHcCCE
Confidence 01111111111 4778999999999999996 665443 33444456889
Q ss_pred EEEEeeCcchhhcCCEEEEEe
Q 004513 498 TIIIARRLSLIRNADYIAVMD 518 (747)
Q Consensus 498 ~I~itH~l~~i~~aD~I~vl~ 518 (747)
++.++|..+.....||++.|-
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEecCCcHHHHHhHHHhhc
Confidence 999999999888899987773
No 454
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.84 E-value=6.3e-10 Score=131.75 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 165 AYAEAASIAEQAVSYIRTLYAFTNETLAKYSY-----ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFL 239 (747)
Q Consensus 165 ~~~~~~~~~~e~l~gi~tIkaf~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l 239 (747)
.....++.+.|.+.++.+||..+.+......| ........+...+..........+...+..+...+++|+|+++
T Consensus 38 ~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~ 117 (644)
T PRK10733 38 LQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWI 117 (644)
T ss_pred HHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 33445667778888899999888776554444 3333333333333332222223333334444567778899999
Q ss_pred HHcccccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccEEEEeEEE
Q 004513 240 VTHNKAHGG---EIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYF 316 (747)
Q Consensus 240 v~~g~~~~G---~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~~v~f 316 (747)
++.+.++.| .++++......+..+ ..+...+..+.....+.+|+.++++...+..
T Consensus 118 v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~--------------------- 175 (644)
T PRK10733 118 FFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS--------------------- 175 (644)
T ss_pred HHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH---------------------
Confidence 999999887 444432222222222 3334445555555566677766654321100
Q ss_pred EecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCC
Q 004513 317 SYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (747)
Q Consensus 317 ~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~ 362 (747)
.| +.+...+++| +.|+||+|+||||+++++.+...
T Consensus 176 ~~---------~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 RF---------QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred HH---------HhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 00 1112245666 99999999999999999988664
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.81 E-value=8.6e-08 Score=88.36 Aligned_cols=117 Identities=29% Similarity=0.376 Sum_probs=82.1
Q ss_pred CCeEEEEeCCCCCCHHHHHHhHhcCCCCCC-ceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCCHH
Q 004513 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTL-GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLD 414 (747)
Q Consensus 336 ~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~-G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~~~ 414 (747)
+|..+.|+||+|+||||+++.|++.+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467899999999999999999999988765 5566665433222211110
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHH-------
Q 004513 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE------- 487 (747)
Q Consensus 415 ~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~------- 487 (747)
............+++.++..+++|-..+++++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 122233445677888899999999988899999999999999987775543
Q ss_pred HHHHhcCCCeEEEEeeC
Q 004513 488 ALDLLMLGRSTIIIARR 504 (747)
Q Consensus 488 ~i~~~~~~~t~I~itH~ 504 (747)
.......+..+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22223445677777773
No 456
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.76 E-value=1.4e-08 Score=126.47 Aligned_cols=78 Identities=28% Similarity=0.278 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHHhccccc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-C
Q 004513 442 RAGLALTEEQKIKLSIARAVLL--------NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-A 511 (747)
Q Consensus 442 e~g~~LSGGQkQRialARAll~--------~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-a 511 (747)
....+|||||+++++|||||.. +|++|||||||++||+.+...+.+.|..+. .|+||++|||....... .
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 3457899999999999999995 899999999999999999999999998774 68999999996666554 5
Q ss_pred CEEEEEeC
Q 004513 512 DYIAVMDE 519 (747)
Q Consensus 512 D~I~vl~~ 519 (747)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 66666654
No 457
>PRK02224 chromosome segregation protein; Provisional
Probab=98.69 E-value=2.1e-08 Score=123.41 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=66.2
Q ss_pred CCCCHHHHH------HHHHhcccccC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEeeCcchhhc
Q 004513 445 LALTEEQKI------KLSIARAVLLN------PSILLLDEVTGGLDFEAERAVQEALDLLML-G-RSTIIIARRLSLIRN 510 (747)
Q Consensus 445 ~~LSGGQkQ------RialARAll~~------p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~-~t~I~itH~l~~i~~ 510 (747)
..||||||| |+||||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+.+.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 367999999999999999999888877653 4 479999999999989
Q ss_pred CCEEEEEeCc
Q 004513 511 ADYIAVMDEG 520 (747)
Q Consensus 511 aD~I~vl~~G 520 (747)
||++++|...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999654
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.68 E-value=2.4e-08 Score=101.35 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=61.0
Q ss_pred cCCeEEEEeCCCCCCHHHHHHhHhcCCC------------CCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHH
Q 004513 335 PAKKAVALVGRNGSGKSSIIPLMERFYD------------PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (747)
Q Consensus 335 ~~Ge~vaivG~sGsGKSTLl~ll~g~~~------------p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tir 402 (747)
++|++++|+||||||||||+++|.+.++ |..|+ ++|.++..++.+.+++. +.|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999986 77888 69999888888887764 3577778888888
Q ss_pred HHHhcCCCCCHHHHHHHH
Q 004513 403 DNIAYGRDATLDQIEEAA 420 (747)
Q Consensus 403 eNi~~g~~~~~~~i~~a~ 420 (747)
+|. ||. ..+.+.+++
T Consensus 78 ~~~-y~~--~~~~i~~~l 92 (205)
T PRK00300 78 GNY-YGT--PRSPVEEAL 92 (205)
T ss_pred Ccc-ccC--cHHHHHHHH
Confidence 873 443 334444433
No 459
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.64 E-value=1.6e-07 Score=97.66 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=86.0
Q ss_pred EecCCeEEEEeCCCCCCHHHHHHhHhc-CCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHh-cCCC
Q 004513 333 TVPAKKAVALVGRNGSGKSSIIPLMER-FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA-YGRD 410 (747)
Q Consensus 333 ~i~~Ge~vaivG~sGsGKSTLl~ll~g-~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~-~g~~ 410 (747)
=+++|.++.|.|++|||||||...++- ... ..+ .+.|+..+-.. ..+.+|.. +|-+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~-------------------~~~y~~~e~~~--~~~~~~~~~~g~~ 78 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK-------------------KVYVITTENTS--KSYLKQMESVKID 78 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC-------------------EEEEEEcCCCH--HHHHHHHHHCCCC
Confidence 589999999999999999999998752 222 112 35555543211 12222221 2222
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcccccccccc---CCCCCCCHHHHHHHHHhccccc--CCCEEEEeCCCCCCC---HHHH
Q 004513 411 ATLDQIEEAAKIAHAHTFISSLEKGYETQVG---RAGLALTEEQKIKLSIARAVLL--NPSILLLDEVTGGLD---FEAE 482 (747)
Q Consensus 411 ~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vg---e~g~~LSGGQkQRialARAll~--~p~illLDEpTsaLD---~~~~ 482 (747)
..+. + ..|+-..+. +.....+.++++.+..++.++. +|+++++||||+.+| ....
T Consensus 79 ~~~~--------------~---~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~ 141 (234)
T PRK06067 79 ISDF--------------F---LWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDI 141 (234)
T ss_pred hhHH--------------H---hCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHH
Confidence 1110 0 001111000 1123456788999999999987 999999999996544 4433
Q ss_pred HHHHHHHHHh-cCCCeEEEEeeCcch-------hhc-CCEEEEEeC
Q 004513 483 RAVQEALDLL-MLGRSTIIIARRLSL-------IRN-ADYIAVMDE 519 (747)
Q Consensus 483 ~~i~~~i~~~-~~~~t~I~itH~l~~-------i~~-aD~I~vl~~ 519 (747)
..+.+.++.+ ..++|+++++|.... +.. +|-++.|+.
T Consensus 142 ~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 142 LNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 3443445443 357888888887643 222 566666653
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.60 E-value=6.8e-08 Score=109.88 Aligned_cols=146 Identities=15% Similarity=0.162 Sum_probs=85.4
Q ss_pred eeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHh
Q 004513 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA 406 (747)
Q Consensus 327 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~ 406 (747)
+++.++.+++|+++++|||||+||||++..|.+.+.+..|.. +|++|++|+ |..+..|++.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHH
Confidence 334455567789999999999999999999999887666642 689999998 6777899987
Q ss_pred cC-C--CCC----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCC--CHHHHHHHHHhcccccCCCEEEEeCCCCCC
Q 004513 407 YG-R--DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL--TEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (747)
Q Consensus 407 ~g-~--~~~----~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~L--SGGQkQRialARAll~~p~illLDEpTsaL 477 (747)
+. . ... .+...... .+..+.+.....|...|.+- +.=+.+...++......-.+|+||.++.+.
T Consensus 307 ~~AeilGVpv~~~~~~~Dl~~-------aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~ 379 (484)
T PRK06995 307 IYGKILGVPVHAVKDAADLRL-------ALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD 379 (484)
T ss_pred HHHHHhCCCeeccCCchhHHH-------HHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH
Confidence 52 2 111 11111111 22344444445565544321 111222222333322222689999988873
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEeeC
Q 004513 478 DFEAERAVQEALDLLM-LGRSTIIIARR 504 (747)
Q Consensus 478 D~~~~~~i~~~i~~~~-~~~t~I~itH~ 504 (747)
| +.+.++.+. .+.+-+++|+-
T Consensus 380 ~------l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 380 T------LNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHhccCCCCEEEEeCC
Confidence 3 333333332 34566777763
No 461
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=9e-08 Score=107.67 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=70.8
Q ss_pred ccEEEEeEEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEEC---CeecCCCCHHH-
Q 004513 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD---GENIKNLKLEW- 382 (747)
Q Consensus 307 ~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~---G~~i~~~~~~~- 382 (747)
+.++.++++..|.. +..+++.++ +|.+|++++|+|+||||||||+++|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 138 ~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 46889999999953 467899996 999999999999999999999999999999999999885 56666554332
Q ss_pred ---hhcceEEEeccC
Q 004513 383 ---LRSQIGLVTQEP 394 (747)
Q Consensus 383 ---lr~~i~~v~Q~~ 394 (747)
+++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 346799999964
No 462
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.56 E-value=0.00025 Score=79.56 Aligned_cols=238 Identities=9% Similarity=-0.035 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (747)
Q Consensus 36 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~ 115 (747)
++.++++...+..+..++..+...+.-.-|-+.+.++-++.. ..|. + =.|+..|+...-+........++.+
T Consensus 144 f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ien--P----DQRIqEDi~~F~~~tl~L~~~li~s 215 (409)
T PRK11098 144 FLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIEG--A----AQRVQEDTMRFASTLENLGVSFINA 215 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCC--c----cHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555556666555443 2222 2 4588899988888777777788888
Q ss_pred HHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004513 116 MATFFSGLAIAFVNCWQ-------------IALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRT 182 (747)
Q Consensus 116 i~~~i~~li~~~~~~w~-------------L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~t 182 (747)
+++++..+.++..++.. |..++++...+-.++..++++++.+..-+.++..++....+...=++.+
T Consensus 216 i~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE- 294 (409)
T PRK11098 216 IMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD- 294 (409)
T ss_pred HHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh-
Confidence 88888777777666644 2333333333333444566777777777777777666553333222222
Q ss_pred HHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Q 004513 183 LYAFTNE-TLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSG 261 (747)
Q Consensus 183 Ikaf~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~ 261 (747)
+.| ....++|.+..++..+...+...+.....+. ..+..++-+.+.+-....|+++.|.+..+..++....
T Consensus 295 ----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y----~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~ 366 (409)
T PRK11098 295 ----RATPPTVRELFSNVRKNYFRLYFHYMYFNIARILY----LQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVR 366 (409)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 122 2233445544444444433333332222222 2223333333345567799999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004513 262 LGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (747)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~s~~Ri~~~l~~ 290 (747)
.++..++..+..+.+-++..+|+.++.+.
T Consensus 367 ~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 367 GSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999988653
No 463
>PRK12369 putative transporter; Reviewed
Probab=98.54 E-value=0.00033 Score=76.69 Aligned_cols=240 Identities=11% Similarity=-0.027 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (747)
Q Consensus 36 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~ 115 (747)
+..++++..++..+..++....+.++-.-|-++++++-+..+- .-|. |. .|+..|+...-+........++.+
T Consensus 69 f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~iDN--PD----QRI~EDi~~f~~~tl~l~~~~i~s 141 (326)
T PRK12369 69 FLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-NIEG--SS----QRIQEDTYRFAKIMESLGLSFLRA 141 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCC--cc----HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555556665556666666666666666665331 1121 22 699999988888877777788888
Q ss_pred HHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004513 116 MATFFSGLAIAFVNCW------------QIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTL 183 (747)
Q Consensus 116 i~~~i~~li~~~~~~w------------~L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI 183 (747)
+++++..++++..++. .+..++++...+-.++..++++.+.+..-+.++..++....+...=++-+.
T Consensus 142 ~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~- 220 (326)
T PRK12369 142 IMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN- 220 (326)
T ss_pred HHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh-
Confidence 8887777776665442 223333333333444455667777777766666666655432221111111
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Q 004513 184 YAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLG 263 (747)
Q Consensus 184 kaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~~ 263 (747)
+.-.....++|.+..+...+...+...+..+..+..+ +..++-..+.+-....|.++.|.+..+..++.....+
T Consensus 221 --~~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~----~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~a 294 (326)
T PRK12369 221 --YAKPETLIELFTGLRFNYFRLFLHYGYFNIWLISFSQ----MMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSS 294 (326)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Confidence 1111333444555444444443333333322222222 2223333334555679999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004513 264 LNQAATNFYSFDQGRIAAYRLYEMIS 289 (747)
Q Consensus 264 l~~~~~~~~~~~~~~~s~~Ri~~~l~ 289 (747)
+..++..+..+.+-++..+|+.++.+
T Consensus 295 ls~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 295 FSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998864
No 464
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=9.1e-08 Score=107.51 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=65.5
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCc---eEEECCeecCCCCHHHh------hcceEEEeccC
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG---EVLLDGENIKNLKLEWL------RSQIGLVTQEP 394 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G---~I~i~G~~i~~~~~~~l------r~~i~~v~Q~~ 394 (747)
..+++++ |+|.+|++++|+|+||+|||||+++|+|+++++.+ .|-.+|.++.++..+.+ |..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 99999999999999999999999999999998864 34445555554433322 55799999998
Q ss_pred ccc-cccHHHHHhc
Q 004513 395 ALL-SLSIRDNIAY 407 (747)
Q Consensus 395 ~lf-~~TireNi~~ 407 (747)
..+ ..++.+|+.+
T Consensus 222 s~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 SPLMRIKATELCHA 235 (434)
T ss_pred ChhhhHHHHHHHHH
Confidence 877 4788888653
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.45 E-value=3.8e-08 Score=113.22 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=91.6
Q ss_pred EecCCeEEEEeCCCCCCHHHHHHhH--hcCCCCCCceEEECCeecCCCCHHHhh---cceEEEeccCccccccHHHHHhc
Q 004513 333 TVPAKKAVALVGRNGSGKSSIIPLM--ERFYDPTLGEVLLDGENIKNLKLEWLR---SQIGLVTQEPALLSLSIRDNIAY 407 (747)
Q Consensus 333 ~i~~Ge~vaivG~sGsGKSTLl~ll--~g~~~p~~G~I~i~G~~i~~~~~~~lr---~~i~~v~Q~~~lf~~TireNi~~ 407 (747)
=+++|..+.|.|++|||||||..-. .|..+..+..+++... -+.++++ +.+|+-.++..- + +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-~----g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-E----GKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-c----CceEE
Confidence 4889999999999999999999876 3555545566666653 2333332 234544443210 0 01111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHh--cccccCCCEEEEeCCCCCCCHHHHHHH
Q 004513 408 GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA--RAVLLNPSILLLDEVTGGLDFEAERAV 485 (747)
Q Consensus 408 g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialA--RAll~~p~illLDEpTsaLD~~~~~~i 485 (747)
-...........++..++.+.+..+ ...+|+||+|||.|+ .++..+|+.+ ...++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~i-----------~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSALIERI-----------NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecCchhccccccccCCHHHHHHHH-----------HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 0000000011122222333333332 235789999999999 5666665444 4566677
Q ss_pred HHHHHHhc-CCCeEEEEeeCcch--------h-h-cCCEEEEEe
Q 004513 486 QEALDLLM-LGRSTIIIARRLSL--------I-R-NADYIAVMD 518 (747)
Q Consensus 486 ~~~i~~~~-~~~t~I~itH~l~~--------i-~-~aD~I~vl~ 518 (747)
.+.++.+. .++|+|+++|+.+. + + -||.|+.|+
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77776653 58999999998753 2 3 389999987
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.43 E-value=1.5e-07 Score=94.63 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=59.8
Q ss_pred ceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCc--cc-cccHH
Q 004513 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA--LL-SLSIR 402 (747)
Q Consensus 326 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~Tir 402 (747)
..+=+.+.+++|+.++|+||+||||||++++|+++++|+.|.|.+.+..-...+ .+..++++.|.+. .+ ..|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455677889999999999999999999999999999999999999774332221 2345777766553 23 35777
Q ss_pred HHHhc
Q 004513 403 DNIAY 407 (747)
Q Consensus 403 eNi~~ 407 (747)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77754
No 467
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=2e-06 Score=85.36 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc-CCEEEEEeCceE
Q 004513 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (747)
Q Consensus 445 ~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~-aD~I~vl~~G~i 522 (747)
...|-|+-=---+.|.+ ++.-|||||||-|+|-|.-+-.+...|+++. .|.-+|+.||..=.+.. --.|+-++.|-+
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 34588876555555554 5679999999999999999999988888875 56778889998765544 567888877764
Q ss_pred eEecChHHH
Q 004513 523 FEMGTHDEL 531 (747)
Q Consensus 523 ve~Gt~~eL 531 (747)
+.-+++|.
T Consensus 207 -~~~~fe~t 214 (233)
T COG3910 207 -EERDFEET 214 (233)
T ss_pred -cccchHHH
Confidence 33345554
No 468
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=3.2e-07 Score=101.80 Aligned_cols=62 Identities=29% Similarity=0.345 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHhccccc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCcchhh
Q 004513 446 ALTEEQKIKLSIARAVLL---------NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR 509 (747)
Q Consensus 446 ~LSGGQkQRialARAll~---------~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l~~i~ 509 (747)
.+|.||+++++||.+|+. +|+|||||||+|+||+..++.+.+.|... +.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 489999999999999999 99999999999999999999999998653 678999999886543
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.39 E-value=6.7e-07 Score=93.41 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=35.2
Q ss_pred ccccCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCCeEEEEeeCcc
Q 004513 460 AVLLNPSILLLDEVTGG------LDFEAERAVQEALDLLM--LGRSTIIIARRLS 506 (747)
Q Consensus 460 All~~p~illLDEpTsa------LD~~~~~~i~~~i~~~~--~~~t~I~itH~l~ 506 (747)
+..++|+++|+| |+++ .|+.....+.+.++++. .+.|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 335799999999 7764 68888888888776654 3788888888653
No 470
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.38 E-value=0.00027 Score=75.84 Aligned_cols=182 Identities=9% Similarity=-0.057 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChh---HHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG---DIVSQVLSDVLLIQSALSEKVGNY 112 (747)
Q Consensus 36 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG---~ilsrl~~Di~~i~~~l~~~l~~~ 112 (747)
++++++...++.....++....+.++-..|-..+.++-++-. .||.-....+ ..=.|++.|++..-+.....+..+
T Consensus 72 ~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~ 150 (281)
T PF06472_consen 72 FLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGL 150 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555566566666666666666666666655 6666421222 333599999998888888777778
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 004513 113 IHNMATFFSGLAIAFVNCWQIAL-ITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETL 191 (747)
Q Consensus 113 i~~i~~~i~~li~~~~~~w~L~l-i~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIkaf~~e~~ 191 (747)
+..++.++...+.+..++..+++ ++++...+..++...+++.+.+...+.++..++.........++.+.|-.++.|+.
T Consensus 151 ~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~ 230 (281)
T PF06472_consen 151 LKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESR 230 (281)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHH
Confidence 77777777666665544444444 55566666667778888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 192 AKYSYATSLQATLRYGILISLVQGLGL 218 (747)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (747)
+.++..+..+...+...+....+....
T Consensus 231 E~~~l~~~f~~l~~~~~~~~~~~~~~~ 257 (281)
T PF06472_consen 231 ERRRLDRRFDALIDNWRRLIRRRLRLG 257 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888877776666555544433
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.36 E-value=7.3e-07 Score=98.27 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=79.9
Q ss_pred ecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-CCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCCCCC
Q 004513 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDAT 412 (747)
Q Consensus 334 i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~~~ 412 (747)
.+++..+.|.||+||||||+++.|++.+++ .+|.|..-+.++.-. .....+++.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence 457889999999999999999999997764 467766544322110 0000011111
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 004513 413 LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492 (747)
Q Consensus 413 ~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~ 492 (747)
..+|....+ --=+|++||-.+||++++||+. |+++.....++ .
T Consensus 175 -------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a 217 (343)
T TIGR01420 175 -------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA---A 217 (343)
T ss_pred -------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence 011111111 1124667888999999999997 88877654443 4
Q ss_pred cCCCeEEEEeeCcchhhcCCEEEEE
Q 004513 493 MLGRSTIIIARRLSLIRNADYIAVM 517 (747)
Q Consensus 493 ~~~~t~I~itH~l~~i~~aD~I~vl 517 (747)
..|.+++.+.|-.+.....+|++-|
T Consensus 218 ~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 5688999999998887777777654
No 472
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.35 E-value=2.7e-06 Score=96.33 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=111.7
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHH
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~Tir 402 (747)
+..+++++ |++.+|++++|+|+||+|||||+++|.|..+++.|.+...|..-+++.. +.+. +..+...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~--~~~~---------~~~~~~l 217 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVRE--FIEH---------DLGEEGL 217 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHH--HHHH---------Hhccccc
Confidence 35689999 9999999999999999999999999999999998877776654433221 1100 1111111
Q ss_pred HHH-hcC---CCCCHHHHHHHHHHHHHHHHHHhcccccccccc-CCCCCCCHHHHHHHHHhcccccCCCEEEEeCC--CC
Q 004513 403 DNI-AYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVG-RAGLALTEEQKIKLSIARAVLLNPSILLLDEV--TG 475 (747)
Q Consensus 403 eNi-~~g---~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vg-e~g~~LSGGQkQRialARAll~~p~illLDEp--Ts 475 (747)
++- .+. .+..-+++..+.-.+...+++.. .|++-.+= +.-.++ -|-+| .|+ +.+.|| +.
T Consensus 218 ~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~--A~A~R-Eis---------l~~ge~P~~~ 283 (440)
T TIGR01026 218 KRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRF--AMAQR-EIG---------LAAGEPPATK 283 (440)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHH--HHHHH-HHH---------HhcCCCCccc
Confidence 111 111 12223444444444445555543 35443321 111111 11222 111 224554 56
Q ss_pred CCCHHHHHHHHHHHHHhc-CCC-------eEEEEeeCcchhhcCCEEEEEeCceEeEecChHHH
Q 004513 476 GLDFEAERAVQEALDLLM-LGR-------STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531 (747)
Q Consensus 476 aLD~~~~~~i~~~i~~~~-~~~-------t~I~itH~l~~i~~aD~I~vl~~G~ive~Gt~~eL 531 (747)
|.||.....+.+.+.+.. .++ |+++-+|++. -.-+|++..+.+|+|+-.+..++.
T Consensus 284 Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 284 GYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred ccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhhC
Confidence 899999988888887664 345 7777889873 335899999999999998876654
No 473
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.33 E-value=3.4e-06 Score=93.68 Aligned_cols=171 Identities=26% Similarity=0.337 Sum_probs=117.6
Q ss_pred EEEEecCCCCCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHh-cCCCCCCceEEECCeecCCCCHHHhhcceEEEec
Q 004513 314 VYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME-RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ 392 (747)
Q Consensus 314 v~f~y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~-g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q 392 (747)
|++..|.++ .+.+ +-|++| ++.|||..--|||||+++|. |.|+..-| ||. +. +|.
T Consensus 227 ve~~LP~~g---~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----------E~--VVT- 282 (448)
T PF09818_consen 227 VEIELPNGG---TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----------EF--VVT- 282 (448)
T ss_pred EEEECCCCC---EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----------eE--EEE-
Confidence 666665422 3444 458999 99999999999999999997 78875444 441 11 111
Q ss_pred cCccccccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeC
Q 004513 393 EPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472 (747)
Q Consensus 393 ~~~lf~~TireNi~~g~~~~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDE 472 (747)
++... .| .+.|- +.++.+.+..||..||.|.||. .=--.+=||-.-|=-+|..||-..+++||+||
T Consensus 283 ~~~av--ki--------rAEDG---R~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDE 348 (448)
T PF09818_consen 283 DPDAV--KI--------RAEDG---RSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDE 348 (448)
T ss_pred CCCce--EE--------EecCC---ceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcC
Confidence 11100 00 11111 2245567889999999999987 32334669999999999999999999999999
Q ss_pred CCCCC-----CHHHHHHH----------HHHHHHh--cCCCeEEEEeeCc-chhhcCCEEEEEeCceE
Q 004513 473 VTGGL-----DFEAERAV----------QEALDLL--MLGRSTIIIARRL-SLIRNADYIAVMDEGRL 522 (747)
Q Consensus 473 pTsaL-----D~~~~~~i----------~~~i~~~--~~~~t~I~itH~l-~~i~~aD~I~vl~~G~i 522 (747)
=|||- |...++.+ .+.++.+ ..|-++|+|+=-. .++..||+|++|++=+.
T Consensus 349 DtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 349 DTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred cccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 99996 55556655 1223333 2467777777555 56778999999998553
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.31 E-value=9.5e-07 Score=89.37 Aligned_cols=106 Identities=15% Similarity=0.284 Sum_probs=62.9
Q ss_pred EEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHh-----cCC--CC
Q 004513 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA-----YGR--DA 411 (747)
Q Consensus 339 ~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~-----~g~--~~ 411 (747)
++||+||+|||||||++.|.+++ ..|. +.++++|.+....+.+++.. +.. ..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~-------------------~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK-------------------VVIISQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC-------------------eEEEEecccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999988 2233 44444444332222222211 111 11
Q ss_pred CHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCH
Q 004513 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479 (747)
Q Consensus 412 ~~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~ 479 (747)
+.+.+.+ .+..+-.| ..+.-...++|.|++++..+ .+.+++++|+|.|+...++
T Consensus 60 ~~~~~~~---------~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLIS---------HLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHHH---------HHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1222222 22222222 12333455778888776544 6788999999999999886
No 475
>PRK01889 GTPase RsgA; Reviewed
Probab=98.31 E-value=4.1e-07 Score=100.68 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=67.4
Q ss_pred ceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHH
Q 004513 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI 405 (747)
Q Consensus 326 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi 405 (747)
-++.+.-.+++|++++|+|+||+|||||++.|+|...+..|+|.+++..... ...++++.+++|+..+|..+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566777788999999999999999999999999999999999998754322 2235689999999999988778887
Q ss_pred hcCC
Q 004513 406 AYGR 409 (747)
Q Consensus 406 ~~g~ 409 (747)
.+..
T Consensus 261 ~l~~ 264 (356)
T PRK01889 261 QLWD 264 (356)
T ss_pred cccC
Confidence 7654
No 476
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.30 E-value=9.7e-07 Score=89.92 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=69.6
Q ss_pred EEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcCC-CCCHHHHH
Q 004513 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIE 417 (747)
Q Consensus 339 ~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~i~ 417 (747)
+++|+||+|||||||++.+.+.+++..| +.+-..|........+.+..++++|+..+. +..+. .....+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~ 74 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG-------VETGGCPHTAIRED 74 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh-------hhcCCCccceeccC
Confidence 6899999999999999999999888655 555555665555555556679999987642 11111 11112223
Q ss_pred HHHHHHHHHHHHHhccccccccccCCCCCCCHHH
Q 004513 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (747)
Q Consensus 418 ~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQ 451 (747)
.+...+.+.+.+..++++....|+-.|..+|.--
T Consensus 75 ~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 75 ASMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 3344566667777777777788888886555443
No 477
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.29 E-value=7.7e-06 Score=100.26 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=47.2
Q ss_pred HhcccccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEeeCcchhhc
Q 004513 457 IARAVLLNPSILLLDEVTGGL-DFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN 510 (747)
Q Consensus 457 lARAll~~p~illLDEpTsaL-D~~~~~~i~~~i~~~~-~~~t~I~itH~l~~i~~ 510 (747)
|+|++..+|+++++|||+.+| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 7889999988887664 57899999999987754
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.24 E-value=1.5e-06 Score=89.83 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=41.7
Q ss_pred eeee-eEEecCCeEEEEeCCCCCCHHHHHHhHh-cCCCCCCceEEECCeecCCCCHHHh---hcceEEEeccC
Q 004513 327 LSGF-YLTVPAKKAVALVGRNGSGKSSIIPLME-RFYDPTLGEVLLDGENIKNLKLEWL---RSQIGLVTQEP 394 (747)
Q Consensus 327 L~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~-g~~~p~~G~I~i~G~~i~~~~~~~l---r~~i~~v~Q~~ 394 (747)
|+.+ .=-+++|+.+.|.|++|||||||...++ ...++.++.+++.... +.+.+ .+++++..|+.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 4442 2358999999999999999999988654 3345555667776632 22222 33466666653
No 479
>PRK08149 ATP synthase SpaL; Validated
Probab=98.23 E-value=1.3e-06 Score=98.13 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=59.8
Q ss_pred CCCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCC---ceEEECCeecCCCCHHHhh----cceEEEecc
Q 004513 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---GEVLLDGENIKNLKLEWLR----SQIGLVTQE 393 (747)
Q Consensus 323 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~---G~I~i~G~~i~~~~~~~lr----~~i~~v~Q~ 393 (747)
+..+++++ +++.+||+++|+|++|+|||||+++|.+..+++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 34689999 9999999999999999999999999999999987 9999999998877655543 566676554
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.18 E-value=1.9e-06 Score=86.51 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=48.0
Q ss_pred CeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCc
Q 004513 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA 395 (747)
Q Consensus 337 Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~ 395 (747)
|++++|+||||||||||+++|.+.+.+ .+.+++..+........++.+++++|+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFF 57 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHH
Confidence 789999999999999999999998876 58888888877666667778999999854
No 481
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.16 E-value=2.8e-06 Score=93.99 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=62.3
Q ss_pred cCCeEEEEeCCCCCCHHHHHHhHhcCCCC--CCc-eEEECCeecCCCCHHHhhcceEEEeccCc-----cccccHHHHHh
Q 004513 335 PAKKAVALVGRNGSGKSSIIPLMERFYDP--TLG-EVLLDGENIKNLKLEWLRSQIGLVTQEPA-----LLSLSIRDNIA 406 (747)
Q Consensus 335 ~~Ge~vaivG~sGsGKSTLl~ll~g~~~p--~~G-~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~-----lf~~TireNi~ 406 (747)
++|..++|+||+||||||++++|++++.+ ..| .|.....++ ++..+.++...++|.|... -|...+++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48899999999999999999999999853 334 565554444 5766666666788888743 46778888876
Q ss_pred cCC-------CCCHHHHHHHHHHH
Q 004513 407 YGR-------DATLDQIEEAAKIA 423 (747)
Q Consensus 407 ~g~-------~~~~~~i~~a~~~~ 423 (747)
..- --+.+.+..+++++
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHH
Confidence 432 12344455677764
No 482
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.11 E-value=4e-06 Score=107.14 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHH----Hhcc--------cccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeeCc
Q 004513 443 AGLALTEEQKIKLS----IARA--------VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (747)
Q Consensus 443 ~g~~LSGGQkQRia----lARA--------ll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~~~t~I~itH~l 505 (747)
+...||||||||++ +|+| +..+|++++|||||++||+.....+.+.+..+ +.++|++||++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 45789999999996 5644 66899999999999999999999999999887 78899999987
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.11 E-value=2.1e-06 Score=85.72 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=40.4
Q ss_pred CCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhc-ceEEEeccC
Q 004513 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS-QIGLVTQEP 394 (747)
Q Consensus 336 ~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~-~i~~v~Q~~ 394 (747)
+|++++|+|+|||||||++++|.+++.+ +.++|.++... ...|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 6999999999999999999999999887 68999877432 22222 345555554
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.07 E-value=0.0001 Score=90.19 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=39.7
Q ss_pred eeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCee
Q 004513 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN 374 (747)
Q Consensus 329 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~ 374 (747)
.+||.+.++..++|+|++|||||||++.|++.+....++|.+-+.+
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~ 483 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKD 483 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 4577888888999999999999999999999888888888776543
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.06 E-value=1.4e-05 Score=101.29 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=36.2
Q ss_pred eeEEecCCeEEEEeCCCCCCHHHHHHhHh-cCCCCCCceEEECC
Q 004513 330 FYLTVPAKKAVALVGRNGSGKSSIIPLME-RFYDPTLGEVLLDG 372 (747)
Q Consensus 330 isl~i~~Ge~vaivG~sGsGKSTLl~ll~-g~~~p~~G~I~i~G 372 (747)
+++..+.++++||+|++|+|||||++++. ++.+..+|.+.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 46677889999999999999999999995 44455689999876
No 486
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.05 E-value=1.9e-05 Score=86.16 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=49.5
Q ss_pred cCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCC------CHHHhhcceEEEeccCcc
Q 004513 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL------KLEWLRSQIGLVTQEPAL 396 (747)
Q Consensus 335 ~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~------~~~~lr~~i~~v~Q~~~l 396 (747)
++|++++++||||+||||++..|.+.+.+..|+|.+.+.|.... ....-|..+.+++|....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~ 179 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGA 179 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCC
Confidence 56899999999999999999999999999989999988887432 222235568888886443
No 487
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.04 E-value=7.2e-06 Score=101.43 Aligned_cols=78 Identities=28% Similarity=0.285 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHHhccc------ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcchhhcCCE
Q 004513 443 AGLALTEEQKIKLSIARAV------LLN--PSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRNADY 513 (747)
Q Consensus 443 ~g~~LSGGQkQRialARAl------l~~--p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~i~~aD~ 513 (747)
...+|||||+=.++||-|| ..+ -+.++|||||..||+++...+.++|..+.. ++++|+|||.-+....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 4568999999877665554 466 699999999999999999999999988765 6999999999999999999
Q ss_pred EEEEeCc
Q 004513 514 IAVMDEG 520 (747)
Q Consensus 514 I~vl~~G 520 (747)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9998653
No 488
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.02 E-value=7.5e-06 Score=92.47 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=61.2
Q ss_pred CCceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCC-CCceEEE---CCeecCCCCHHHhh---cceEEE-----e
Q 004513 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLL---DGENIKNLKLEWLR---SQIGLV-----T 391 (747)
Q Consensus 324 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p-~~G~I~i---~G~~i~~~~~~~lr---~~i~~v-----~ 391 (747)
..+++++ |++.+|++++|+|+||+|||||+++|+|+.++ ..|.|.+ .|.++.++..+.++ .+.++| +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3578988 99999999999999999999999999999854 4466666 45777665555443 235555 8
Q ss_pred ccCcc------ccccHHHHHhc
Q 004513 392 QEPAL------LSLSIRDNIAY 407 (747)
Q Consensus 392 Q~~~l------f~~TireNi~~ 407 (747)
|+|.. ...++.|.++.
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~ 252 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRD 252 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHH
Confidence 88742 12467777753
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.00 E-value=3.3e-06 Score=86.28 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=35.6
Q ss_pred cCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEECCeecCCCCHHHhhcceEEEeccCcccc
Q 004513 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS 398 (747)
Q Consensus 335 ~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~ 398 (747)
++|+++||+||||||||||++.|.+++++ + .+++++||.++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~-------------~~~~i~~D~~~~~ 46 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------L-------------EIVIISQDNYYKD 46 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------c-------------CCeEecccccccC
Confidence 67999999999999999999999998764 1 4667777776654
No 490
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.00 E-value=1.1e-05 Score=80.27 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=45.9
Q ss_pred CeEEEEeCCCCCCHHHHHHhHhcCCCCCCceEEE-----------CCeecCCCCHHHhh-----cceEEEeccCccccc
Q 004513 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL-----------DGENIKNLKLEWLR-----SQIGLVTQEPALLSL 399 (747)
Q Consensus 337 Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i-----------~G~~i~~~~~~~lr-----~~i~~v~Q~~~lf~~ 399 (747)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.++...+.+.+. +.++.+.|...++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65544 66666656555442 348888887766544
No 491
>PLN02796 D-glycerate 3-kinase
Probab=97.99 E-value=2.5e-06 Score=93.09 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=51.5
Q ss_pred CceeeeeEEe---cCCeE-----EEEeCCCCCCHHHHHHhHhcCCCCC---CceEEECCeecCCCCHHHhhc
Q 004513 325 PILSGFYLTV---PAKKA-----VALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWLRS 385 (747)
Q Consensus 325 ~vL~~isl~i---~~Ge~-----vaivG~sGsGKSTLl~ll~g~~~p~---~G~I~i~G~~i~~~~~~~lr~ 385 (747)
.+++++++.+ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4788888887 56776 9999999999999999999999875 588999998887766666655
No 492
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=1.5e-05 Score=95.07 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=34.8
Q ss_pred ceeeeeEEecCCeEEEEeCCCCCCHHHHHHhHhcCCCCCCc
Q 004513 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366 (747)
Q Consensus 326 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G 366 (747)
++++.++.+++|+++++|||||+||||++..|++.+....|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 45566777788999999999999999999999998865555
No 493
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.96 E-value=8.3e-06 Score=81.99 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=57.5
Q ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEeeCcch--h-hcCCEEEEEeCc
Q 004513 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSL--I-RNADYIAVMDEG 520 (747)
Q Consensus 450 GQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~~-~~t~I~itH~l~~--i-~~aD~I~vl~~G 520 (747)
|+-+|..||.++..||+.+..+| +.+||...+.+.+.+.+... +.++|+.+|.+.. + ..||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 47899999999999999998887 78999999999888877643 4689999998843 3 459999998765
No 494
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.95 E-value=3.9e-05 Score=71.37 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEeeCcc
Q 004513 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM------LGRSTIIIARRLS 506 (747)
Q Consensus 452 kQRialARAll~~p~illLDEpTsaLD~~~~~~i~~~i~~~~------~~~t~I~itH~l~ 506 (747)
++.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555556677889999999998765 5556666777776653 4566777777543
No 495
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.90 E-value=5.9e-05 Score=78.13 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=49.2
Q ss_pred ecCCeEEEEeCCCCCCHHHHHHhHhcC-CCC------CCceEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHh
Q 004513 334 VPAKKAVALVGRNGSGKSSIIPLMERF-YDP------TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA 406 (747)
Q Consensus 334 i~~Ge~vaivG~sGsGKSTLl~ll~g~-~~p------~~G~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~ 406 (747)
+++|+++.|+|++|||||||+..++.. ..| ..+.+++++.+- .+.+.+++.. |.......++.+|+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~--~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT--FRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC--cCHHHHHHHH----HHhccChHhHhcCEE
Confidence 889999999999999999999988632 333 378888888652 2333332211 111112245667777
Q ss_pred cCCCCCHHHHHH
Q 004513 407 YGRDATLDQIEE 418 (747)
Q Consensus 407 ~g~~~~~~~i~~ 418 (747)
+.+..+.+++.+
T Consensus 90 ~~~~~~~~~l~~ 101 (235)
T cd01123 90 VARAYNSDHQLQ 101 (235)
T ss_pred EEecCCHHHHHH
Confidence 665444444433
No 496
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.88 E-value=3.6e-05 Score=91.16 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=64.6
Q ss_pred CeEEEEeCCCCCCHHHHHHhHhcCCCCCCc--------eEEECCeecCCCCHHHhhcceEEEeccCccccccHHHHHhcC
Q 004513 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLG--------EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG 408 (747)
Q Consensus 337 Ge~vaivG~sGsGKSTLl~ll~g~~~p~~G--------~I~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g 408 (747)
.+.+.|+||+|+||||+++++.++..+..| -|.+||.++. ++...+ .|-.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhcC
Confidence 346999999999999999999999875444 4788886552 222111 122233
Q ss_pred CCCC--HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCCCCHHHHHHHH
Q 004513 409 RDAT--LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486 (747)
Q Consensus 409 ~~~~--~~~i~~a~~~~~l~~~i~~lp~G~~t~vge~g~~LSGGQkQRialARAll~~p~illLDEpTsaLD~~~~~~i~ 486 (747)
...+ .+...+.++.. |+.......-..+||| +|+||| +..||+..+..+.
T Consensus 235 ~~~~~~~~~a~~~l~~~-----------gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 SVHDPIYQGARRDLAET-----------GVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CccHHHHHHHHHHHHHc-----------CCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 2110 01111112211 2211112223356677 999999 7999999999888
Q ss_pred HHHHH
Q 004513 487 EALDL 491 (747)
Q Consensus 487 ~~i~~ 491 (747)
+.+++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 88864
No 497
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=97.85 E-value=0.064 Score=57.88 Aligned_cols=236 Identities=10% Similarity=-0.037 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (747)
Q Consensus 36 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~lR~~lf~~ll~~~~~ffd~~~~sG~ilsrl~~Di~~i~~~l~~~l~~~i~~ 115 (747)
+..+++...++..+..+...+..-|....|-+-++++--+. ++.-.--.|+..|+-.....+-.....++.+
T Consensus 62 f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~--------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~s 133 (315)
T PF05992_consen 62 FLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL--------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRS 133 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333334444444444455555555555554443 1233346799999988888888777888888
Q ss_pred HHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004513 116 MATFFSGLAIAFVNCWQ-------------IALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRT 182 (747)
Q Consensus 116 i~~~i~~li~~~~~~w~-------------L~li~l~~~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~t 182 (747)
+++++..+-+++.++-. |..++++...+-.++..+.+.++..+.-+.|+..+...+.+ +-|=..
T Consensus 134 imtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeL---V~gED~ 210 (315)
T PF05992_consen 134 IMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKEL---VYGEDD 210 (315)
T ss_pred HHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHH---HhcCcc
Confidence 88888777666544421 22222222222333444556666666666666666555422 211111
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Q 004513 183 LYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGL 262 (747)
Q Consensus 183 Ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~~~~G~l~~~~~~~~~~~~ 262 (747)
..........+.|.+...++.+.......+.-......+....+..+ +-+--+..|.+|.|.+.....++.....
T Consensus 211 -~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~y~q~~~i~~~i----~l~Psi~ag~iTLG~~~Qi~~aF~~V~~ 285 (315)
T PF05992_consen 211 -ANRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARISYLQFDVIFPYI----ILIPSIVAGAITLGVLQQISNAFGQVRS 285 (315)
T ss_pred -cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11223344555666666666666555555544444444333332222 1223356899999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004513 263 GLNQAATNFYSFDQGRIAAYRLYEM 287 (747)
Q Consensus 263 ~l~~~~~~~~~~~~~~~s~~Ri~~~ 287 (747)
+++-+...+..+.+-+...+|+.++
T Consensus 286 sfq~lv~~W~tivEL~Si~kRL~~F 310 (315)
T PF05992_consen 286 SFQYLVNSWTTIVELRSIYKRLRAF 310 (315)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8888899999999999999999886
No 498
>PTZ00035 Rad51 protein; Provisional
Probab=97.85 E-value=3.9e-05 Score=84.41 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=58.3
Q ss_pred EecCCeEEEEeCCCCCCHHHHHHhHhcCCC-C-----CCceE-EECCeecCCCCHHHhhcceEEEeccCccccccHHHHH
Q 004513 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYD-P-----TLGEV-LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI 405 (747)
Q Consensus 333 ~i~~Ge~vaivG~sGsGKSTLl~ll~g~~~-p-----~~G~I-~i~G~~i~~~~~~~lr~~i~~v~Q~~~lf~~TireNi 405 (747)
=|++|+++.|+|++|||||||+..++.... | .+|.+ +||+... ++++. +..+.|...++..++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 488999999999999999999998876554 3 45666 7888543 34432 4445666666667899999
Q ss_pred hcCCCCCHHHHHH
Q 004513 406 AYGRDATLDQIEE 418 (747)
Q Consensus 406 ~~g~~~~~~~i~~ 418 (747)
.+.+.++.++..+
T Consensus 188 ~~~~~~~~e~~~~ 200 (337)
T PTZ00035 188 AYARAYNHEHQMQ 200 (337)
T ss_pred EEEccCCHHHHHH
Confidence 8887666554433
No 499
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.84 E-value=6.2e-06 Score=82.47 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHHHH--Hhccccc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 004513 439 QVGRAGLALTEEQKIKLS--IARAVLL-NPSILLLDEVTGGLDFEAERAVQEALDLLML 494 (747)
Q Consensus 439 ~vge~g~~LSGGQkQRia--lARAll~-~p~illLDEpTsaLD~~~~~~i~~~i~~~~~ 494 (747)
.++.+.-.+++||+|++. +++++-. +++++ ||||+|.+..+.+.+.|..+.+
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 456666678999999977 6666644 34444 9999999998888888877654
No 500
>PRK15494 era GTPase Era; Provisional
Probab=97.83 E-value=1.1e-05 Score=88.92 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCCcccEEEEeEEEEecCCCCCCceeeeeEEecCCe-------EEEEeCCCCCCHHHHHHhHhcC
Q 004513 303 PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKK-------AVALVGRNGSGKSSIIPLMERF 360 (747)
Q Consensus 303 ~~~~~~I~~~~v~f~y~~~~~~~vL~~isl~i~~Ge-------~vaivG~sGsGKSTLl~ll~g~ 360 (747)
+...|.+++++++|+|+. ..++++.+++++++|+ .++|||++|+|||||++.|.|.
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 346788999999999983 4679999999999999 9999999999999999999874
Done!