Query         004513
Match_columns 747
No_of_seqs    354 out of 3227
Neff          6.6 
Searched_HMMs 29240
Date          Tue Mar 26 18:00:42 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/004513.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1821-1824//hhsearch_pdb/004513hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4f4c_A Multidrug resistance pr   1.0       1       1  833.2  68.0  519   29-548   135-656 (1321)
  2 4f4c_A Multidrug resistance pr   1.0       1       1  773.1  47.1  518   31-548   795-1319(1321)
  3 3g5u_A MCG1178, multidrug resi   1.0       1       1  745.7  56.2  516   30-546   108-626 (1284)
  4 3qf4_B Uncharacterized ABC tra   1.0       1       1  691.5  58.2  515   30-547    77-592 (598)
  5 3qf4_A ABC transporter, ATP-bi   1.0       1       1  688.4  66.8  514   31-546    64-579 (587)
  6 4a82_A Cystic fibrosis transme   1.0       1       1  684.9  63.0  510   34-545    65-576 (578)
  7 3g5u_A MCG1178, multidrug resi   1.0       1       1  679.7  54.9  518   31-548   750-1273(1284)
  8 2yl4_A ATP-binding cassette SU   1.0       1       1  673.3  68.5  512   34-546    66-584 (595)
  9 3b60_A Lipid A export ATP-bind   1.0       1       1  671.2  64.3  507   36-545    71-579 (582)
 10 3b5x_A Lipid A export ATP-bind   1.0       1       1  671.1  70.2  507   36-545    71-579 (582)

No 1  
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00  E-value=1  Score=833.16  Aligned_cols=519  Identities=33%  Similarity=0.577  Sum_probs=487.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999980990225105884599999998799999999899
Q 004513           29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEK  108 (747)
Q Consensus        29 l~~~~l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~  108 (747)
                      +..+++++++++++.+++++++.++|.++++++..++|.++|+|++++|++|||+ .++|++++|+++|++.+++.+...
T Consensus       135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~-~~~G~l~sr~~~D~~~i~~~~~~~  213 (1321)
T 4f4c_A          135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERVKEGTGDK  213 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH-TCCTTHHHHHHHHHHHHHHTSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999997889899879-984899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999988998869999999999999999999999999999999999999999999999946999998301
Q 004513          109 VGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTN  188 (747)
Q Consensus       109 ~~~~i~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~  188 (747)
                      +..++..+..++++++++++++|++++++++++|+++++..++.+...+..++.++..++..+.+.|.+.|+++||+|++
T Consensus       214 l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~  293 (1321)
T 4f4c_A          214 IGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG  293 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999989999999999999999999999999999999999999999999999983999998214


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             49999999999999999999999999998999999999999999999999997066547779999999999999999999
Q 004513          189 ETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA  268 (747)
Q Consensus       189 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~  268 (747)
                      |+.+.++|.+..+...+...+.....++..+...++..+.+++++|+|++++..|.++.|.+++++.++.....++..+.
T Consensus       294 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~  373 (1321)
T 4f4c_A          294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAG  373 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             29999999999999999999999999999999999999999999999999999599869999999999999999999899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCC
Q ss_conf             99999999999999999985279888889--9999999866489996999944899987100002784199099982899
Q 004513          269 TNFYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN  346 (747)
Q Consensus       269 ~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~  346 (747)
                      ..+..+.++.++++|+.++++.+++....  .+....+..+.|+++||+|+|+++++.++|+|+||+|++|+++|||||+
T Consensus       374 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s  453 (1321)
T 4f4c_A          374 PQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS  453 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECC
T ss_conf             99999999999999999997178534566655656778887679998554079999874333318862288278998058


Q ss_pred             CCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC-CCCHHHHHHHHHHHHH
Q ss_conf             998778999473488899756999996168877887622268880367555666889975287-7998899999999999
Q 004513          347 GSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA  425 (747)
Q Consensus       347 GsGKSTLl~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~~~~~l~~~~l  425 (747)
                      |||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+||+|+||||++||||||.||+ .++++++++|++.|++
T Consensus       454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l  533 (1321)
T 4f4c_A          454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA  533 (1321)
T ss_dssp             SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             98577888875456516448615799650112599985046665875332078616788641552209999999987565


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             99898322354311158899999899999988212055987899857989999999999999999843998699996075
Q 004513          426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL  505 (747)
Q Consensus       426 ~~~i~~lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l  505 (747)
                      ++||+.||+||+|.|||+|.+|||||||||+||||+|+||+|||||||||+||+++++.++++++++.+++|+|+||||+
T Consensus       534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl  613 (1321)
T 4f4c_A          534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL  613 (1321)
T ss_dssp             HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred             HHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             46887088888607558988777778799999998725999899845544688789999999999984798899973638


Q ss_pred             CHHHCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             2453178899993966867349678841361899999847630
Q 004513          506 SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA  548 (747)
Q Consensus       506 ~~l~~~D~I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~~~~  548 (747)
                      ++++.||+|++|++|+|+++|+|+||++.++.|.++++.|...
T Consensus       614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~~  656 (1321)
T 4f4c_A          614 STIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFT  656 (1321)
T ss_dssp             TTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCEEEEEECCEEECCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7898689899963996513689999998532799999962212


No 2  
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00  E-value=1  Score=773.05  Aligned_cols=518  Identities=32%  Similarity=0.508  Sum_probs=456.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999980990225105-8845999999987999999998999
Q 004513           31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTY-GNNGDIVSQVLSDVLLIQSALSEKV  109 (747)
Q Consensus        31 ~~~l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~-~~sG~ilsrl~~Dv~~i~~~~~~~~  109 (747)
                      .+++.+++++++.+++.++..++....+.++..++|.++|++++++|++|||.. +++|++++|+++|++.+++.++..+
T Consensus       795 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l  874 (1321)
T 4f4c_A          795 FWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF  874 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999988873499333216788848888502505999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             99999999999999889988699999999999999999999999999999999999999999999999469999983014
Q 004513          110 GNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE  189 (747)
Q Consensus       110 ~~~i~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e  189 (747)
                      ..++..++.+++.++++++++|.++++.++++|++++...+..+...+...+.++..++....+.|++.|+++||+|++|
T Consensus       875 ~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e  954 (1321)
T 4f4c_A          875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARE  954 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTH
T ss_pred             HHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             99999865377770221378689999999988899999999999999999999999888988999999627988861414


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999989999999999999999999999970665477799--9999999999999999
Q 004513          190 TLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIV--TALFAVILSGLGLNQA  267 (747)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~--~~~~~~~~~~~~l~~~  267 (747)
                      +.+.++|.+..+...+...+...+.++...+...+..+..++++++|++++..+..+.+...  ..+.++.....++..+
T Consensus       955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1034 (1321)
T 4f4c_A          955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFA 1034 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999999999999999999999999999999999875788753765421478999999998778899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCC
Q ss_conf             9999999999999999999852798888899-999999866489996999944899987100002784199099982899
Q 004513          268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYD-GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN  346 (747)
Q Consensus       268 ~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~  346 (747)
                      ...+..+.++..+.+|+.++++.+++..... ....++..+.|+|+||+|+|+.+++.++|+|+||+|++|+++||||||
T Consensus      1035 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~S 1114 (1321)
T 4f4c_A         1035 TSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPS 1114 (1321)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCC
T ss_conf             99999999999999989998607665777667787888888189998798579999882124516998898999998999


Q ss_pred             CCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC---CCCHHHHHHHHHHH
Q ss_conf             998778999473488899756999996168877887622268880367555666889975287---79988999999999
Q 004513          347 GSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQIEEAAKIA  423 (747)
Q Consensus       347 GsGKSTLl~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~~~~~~~~~l~~~  423 (747)
                      |||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+||||+|+||++||||||.||.   .+++++++++++.+
T Consensus      1115 GsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a 1194 (1321)
T 4f4c_A         1115 GCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLA 1194 (1321)
T ss_dssp             TSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             98199999999568638997899999986549999998545998789973272399997454999999999999999982


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             99998983223543111588999998999999882120559878998579899999999999999998439986999960
Q 004513          424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR  503 (747)
Q Consensus       424 ~l~~~i~~lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH  503 (747)
                      +++++|..||+||+|.|||+|.+||||||||||||||++++|+|+|||||||+||+++++.|++.|++..+++|+|+|||
T Consensus      1195 ~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A         1195 NIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp             TCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred             CCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             98499971767899982388915699999999999999717998999681115789999999999999739998999606


Q ss_pred             CCCHHHCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             752453178899993966867349678841361899999847630
Q 004513          504 RLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA  548 (747)
Q Consensus       504 ~l~~l~~~D~I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~~~~  548 (747)
                      |++++.+||+|+||++|+|+|+|+|+||++.++.|+++++.|..+
T Consensus      1275 RLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A         1275 RLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTE 1319 (1321)
T ss_dssp             SSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-------------
T ss_pred             CHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHHC
T ss_conf             899999699999998989999888899984980999999999850


No 3  
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00  E-value=1  Score=745.75  Aligned_cols=516  Identities=38%  Similarity=0.657  Sum_probs=475.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999809902251058845999999987999999998999
Q 004513           30 SELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKV  109 (747)
Q Consensus        30 ~~~~l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~~  109 (747)
                      ..+.+++++++++.+++.+++.+++...++++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~  186 (1284)
T 3g5u_A          108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKI  186 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999998699899756-8877899999988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             99999999999999889988699999999999999999999999999999999999999999999999469999983014
Q 004513          110 GNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE  189 (747)
Q Consensus       110 ~~~i~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e  189 (747)
                      ..++..++.+++.++++++++|++++++++++|+++++..++.+...+..++.++..++..+.+.|.+.|+++||+|++|
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e  266 (1284)
T 3g5u_A          187 GMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQ  266 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCH
T ss_conf             99999999999999999999899999999999999999999999999999999999999999999999787999984653


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999989999999999999999999999970665477799999999999999999999
Q 004513          190 TLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAAT  269 (747)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~  269 (747)
                      +.+.++|.+..+...+...+.....++..++..++..+..++++|+|++++..+.++.|.++++++++.....++.++..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  346 (1284)
T 3g5u_A          267 KKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP  346 (1284)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999992998899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCC
Q ss_conf             999999999999999998527988888--999999998664899969999448999871000027841990999828999
Q 004513          270 NFYSFDQGRIAAYRLYEMISRSSSTTN--YDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG  347 (747)
Q Consensus       270 ~~~~~~~~~~s~~Ri~~~l~~~~~~~~--~~~~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~G  347 (747)
                      .+..+.++..++.|+.++++.+++...  ..+...+...+.|+++|++|+|+++++.++|+|+||++++|+++|||||||
T Consensus       347 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG  426 (1284)
T 3g5u_A          347 NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG  426 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCC
T ss_conf             99999999999999999972898677666567777777771899998997699998710125458975998899989999


Q ss_pred             CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC-CCCHHHHHHHHHHHHHH
Q ss_conf             98778999473488899756999996168877887622268880367555666889975287-79988999999999999
Q 004513          348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAH  426 (747)
Q Consensus       348 sGKSTLl~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~~~~~l~~~~l~  426 (747)
                      ||||||+++|+|+++|++|+|.++|.|+.+++.+++|++|+||+|+|++|++|++|||.+|. ..++++++++++.++++
T Consensus       427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~  506 (1284)
T 3g5u_A          427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY  506 (1284)
T ss_dssp             SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCH
T ss_conf             97999999980788999738999999877579999986548986887537766999974579899999999999982969


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             98983223543111588999998999999882120559878998579899999999999999998439986999960752
Q 004513          427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLS  506 (747)
Q Consensus       427 ~~i~~lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l~  506 (747)
                      +++..+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.++++++...+++|+|+|||+++
T Consensus       507 ~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~  586 (1284)
T 3g5u_A          507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS  586 (1284)
T ss_dssp             HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             99974656334501478786599999999999999529998999798777799999999999999739998999940778


Q ss_pred             HHHCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHH
Q ss_conf             4531788999939668673496788413618999998476
Q 004513          507 LIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE  546 (747)
Q Consensus       507 ~l~~~D~I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~~  546 (747)
                      ++..||+|++|++|+++++|+|+||++.++.|..++..+.
T Consensus       587 ~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~  626 (1284)
T 3g5u_A          587 TVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT  626 (1284)
T ss_dssp             HHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred             HHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHH
T ss_conf             9974998999989999997889999867877999999743


No 4  
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00  E-value=1  Score=691.49  Aligned_cols=515  Identities=30%  Similarity=0.449  Sum_probs=466.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999809902251058845999999987999999998999
Q 004513           30 SELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKV  109 (747)
Q Consensus        30 ~~~~l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~~  109 (747)
                      ..+.+.++++++...++.+++.++....+.++..++|.++|++++++|+.||++ .++|++++|+++|++.+++.+...+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~  155 (598)
T 3qf4_B           77 PRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLGNSI  155 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-SCHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999997799999768-8889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             99999999999999889988699999999999999999999999999999999999999999999999469999983014
Q 004513          110 GNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE  189 (747)
Q Consensus       110 ~~~i~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e  189 (747)
                      ..++..++.+++.++++++++|.++++.++.+|+++++...+.+...+..++.++..++..+.+.|.+.|+++||+|++|
T Consensus       156 ~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e  235 (598)
T 3qf4_B          156 IQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTRE  235 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCH
T ss_conf             99999999999999999999899999999999999999999999999999999999999999999997379999974870


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999989999999999999999999999970665477799999999999999999999
Q 004513          190 TLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAAT  269 (747)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~  269 (747)
                      +.+.++|.+......+...+.....++...+...+..+..++++++|++++..|.++.|.+++++.+...+..++..+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~  315 (598)
T 3qf4_B          236 EKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSN  315 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999985997899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCC
Q ss_conf             99999999999999999852798888899999999866489996999944899987100002784199099982899998
Q 004513          270 NFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG  349 (747)
Q Consensus       270 ~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~GsG  349 (747)
                      .+..+.++..+++|+.++++.+++.........++..+.|+++|++|+|++  +.++|+|+||++++|+++|++||||||
T Consensus       316 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsG  393 (598)
T 3qf4_B          316 QFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSG  393 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC--CCCCCCCEEEEECCCCEEEEECCCCCC
T ss_conf             999999999999999999768877777777777777771899998997799--986012227998699889998999996


Q ss_pred             HHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf             778999473488899756999996168877887622268880367555666889975287-7998899999999999998
Q 004513          350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTF  428 (747)
Q Consensus       350 KSTLl~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~~~~~l~~~~l~~~  428 (747)
                      ||||+++|+|+++|++|+|.++|.|+.+++.+.+|++++||+|+|++|++|++|||.++. ..++++++++++.++++++
T Consensus       394 KSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~  473 (598)
T 3qf4_B          394 KTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF  473 (598)
T ss_dssp             TTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHH
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf             99999999458579980899999983018899998410899079823246399997447999999999999999697888


Q ss_pred             HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHH
Q ss_conf             98322354311158899999899999988212055987899857989999999999999999843998699996075245
Q 004513          429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI  508 (747)
Q Consensus       429 i~~lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l~~l  508 (747)
                      ++.+|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+++++..+++|+|+|||+++.+
T Consensus       474 ~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~  553 (598)
T 3qf4_B          474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI  553 (598)
T ss_dssp             HHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH
T ss_pred             HHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             97464532364227889879999999999999964999999989766799999999999999980899899994277899


Q ss_pred             HCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHHH
Q ss_conf             317889999396686734967884136189999984763
Q 004513          509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA  547 (747)
Q Consensus       509 ~~~D~I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~~~  547 (747)
                      +.||+|++|++|++++.|+|+|+++.++.|.+++..+..
T Consensus       554 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~  592 (598)
T 3qf4_B          554 KNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYG  592 (598)
T ss_dssp             HHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHG
T ss_pred             HCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHH
T ss_conf             719989999899999877899998678779999999764


No 5  
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00  E-value=1  Score=688.36  Aligned_cols=514  Identities=27%  Similarity=0.363  Sum_probs=464.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999998099022510588459999999879999999989999
Q 004513           31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG  110 (747)
Q Consensus        31 ~~~l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~~~  110 (747)
                      .+.++++++++...++.++..++....+.++..++|.++|+|++++|+.||++ .++|++++|+++|++.+++.+...+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~  142 (587)
T 3qf4_A           64 KTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR-FHTSSLITRLTNDVTQLQNLVMMLLR  142 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999997889799765-88899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             99999999999998899886999999999999999999999999999999999999999999999994699999830149
Q 004513          111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET  190 (747)
Q Consensus       111 ~~i~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e~  190 (747)
                      .++..++.+++.+++++.++|.+++++++.+|+++++..++.+...+..++.++..++..+.+.|.+.|+++||+|++|+
T Consensus       143 ~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~  222 (587)
T 3qf4_A          143 IVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREE  222 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             99999999999999999998999999999999999999999999999999999999999999999985599999862149


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999899999999999999999999999706654777999999999999999999999
Q 004513          191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN  270 (747)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~~  270 (747)
                      .+.++|.+..+...+...+.....+....+...+..+..++++++|++++..|.++.|.++++..++.....++..+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~  302 (587)
T 3qf4_A          223 YENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNI  302 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999849938999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCC
Q ss_conf             99999999999999998527988888999-99999866489996999944899987100002784199099982899998
Q 004513          271 FYSFDQGRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG  349 (747)
Q Consensus       271 ~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~GsG  349 (747)
                      +..+.++..+++|+.++++.+++..+... ...++..+.|+++|++|+|+.. +.++|+|+||++++|+++|++||||||
T Consensus       303 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsG  381 (587)
T 3qf4_A          303 LNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSG  381 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCCCEECEEEEECCCCEEEEECCCCCC
T ss_conf             9999999999999999976897657887765668888807997889984899-976421117998699889998999997


Q ss_pred             HHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf             778999473488899756999996168877887622268880367555666889975287-7998899999999999998
Q 004513          350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTF  428 (747)
Q Consensus       350 KSTLl~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~~~~~l~~~~l~~~  428 (747)
                      ||||+++|+|+++|++|+|.++|.|+.+++.+++|++++||+|+|++|++|++|||.++. ..++++++++++.++++++
T Consensus       382 KSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~  461 (587)
T 3qf4_A          382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDF  461 (587)
T ss_dssp             HHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf             99999999278669986798999983407899998413897789867675599998524889999999999999684999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHH
Q ss_conf             98322354311158899999899999988212055987899857989999999999999999843998699996075245
Q 004513          429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI  508 (747)
Q Consensus       429 i~~lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l~~l  508 (747)
                      +..+|+|++|.++++|.+||||||||++||||++++|+|+|||||||+||+++++.+++.+++..+++|+|+|||+++.+
T Consensus       462 i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  541 (587)
T 3qf4_A          462 IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA  541 (587)
T ss_dssp             HHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHH
T ss_pred             HHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             97565312127518989929999999999999972999999979754479999999999999867999899982276889


Q ss_pred             HCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHH
Q ss_conf             31788999939668673496788413618999998476
Q 004513          509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE  546 (747)
Q Consensus       509 ~~~D~I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~~  546 (747)
                      ..||+|++|++|++++.|+|+|+++.++.|.+++..+.
T Consensus       542 ~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~  579 (587)
T 3qf4_A          542 LLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQF  579 (587)
T ss_dssp             TTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC
T ss_pred             HHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHH
T ss_conf             81998999989989997889999867839999999984


No 6  
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00  E-value=1  Score=684.88  Aligned_cols=510  Identities=30%  Similarity=0.418  Sum_probs=462.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999998099022510588459999999879999999989999999
Q 004513           34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI  113 (747)
Q Consensus        34 l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~~~~~i  113 (747)
                      +.++++++...++.+++.++..+.+.++..++|.++|+|++++|+.||++ .++|++++|+++|++.+++.+...+..++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~  143 (578)
T 4a82_A           65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIW  143 (578)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999998789999768-98699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99999999998899886999999999999999999999999999999999999999999999994699999830149999
Q 004513          114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK  193 (747)
Q Consensus       114 ~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e~~~~  193 (747)
                      ..++.+++.++++++++|.++++.++..|+++++...+.+...+..++.++..++..+.+.|.+.|+++||+|++|+.+.
T Consensus       144 ~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~  223 (578)
T 4a82_A          144 LDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEA  223 (578)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999999999999996999999999999999999999999999999999999999999999982499999816649999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999899999999999999999999999706654777999999999999999999999999
Q 004513          194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS  273 (747)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~  273 (747)
                      ++|.+......+...+.....+...++...+..+..++++++|++++..|.++.|.++++..++.....++..+...+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~  303 (578)
T 4a82_A          224 KNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT  303 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999859958999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCCHHH
Q ss_conf             99999999999998527988888999-99999866489996999944899987100002784199099982899998778
Q 004513          274 FDQGRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS  352 (747)
Q Consensus       274 ~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~GsGKST  352 (747)
                      +.++..+++|+.++++.+++..+... ...+...+.|+++|++|+|++. +.++|+|+||++++|+++|++|||||||||
T Consensus       304 ~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKST  382 (578)
T 4a82_A          304 LTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKST  382 (578)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEEECCCCEEEEECCCCCHHHH
T ss_conf             9999999999999976897666787766667778807999999975899-974134337998799999998999985999


Q ss_pred             HHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999473488899756999996168877887622268880367555666889975287-7998899999999999998983
Q 004513          353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS  431 (747)
Q Consensus       353 Ll~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~-~~~~~~~~~~l~~~~l~~~i~~  431 (747)
                      |+++|+|+++|++|+|.++|.|+.+.+.+++|++++||+|+|++|++|++|||.++. ..+++++.++++.+++++++..
T Consensus       383 ll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (578)
T 4a82_A          383 LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMN  462 (578)
T ss_dssp             HHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred             HHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf             99998467889996799999984427899996006899289834764599998527999889999999988095999975


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCC
Q ss_conf             22354311158899999899999988212055987899857989999999999999999843998699996075245317
Q 004513          432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA  511 (747)
Q Consensus       432 lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l~~l~~~  511 (747)
                      +|+|++|.+|++|.+||||||||++||||++++|++++||||||+||+++++.+.++++...+++|+|+|||+++.++.|
T Consensus       463 lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~  542 (578)
T 4a82_A          463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHA  542 (578)
T ss_dssp             STTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTC
T ss_pred             CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCC
T ss_conf             73301025306889679999999999999974999999978654579999999999999980899799983178999719


Q ss_pred             CEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
Q ss_conf             8899993966867349678841361899999847
Q 004513          512 DYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE  545 (747)
Q Consensus       512 D~I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~  545 (747)
                      |+|++|++|++++.|+|+|+++.++.|.++++.|
T Consensus       543 d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q  576 (578)
T 4a82_A          543 DKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ  576 (578)
T ss_dssp             SEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTT
T ss_pred             CEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf             9899998998999888999985883899999850


No 7  
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00  E-value=1  Score=679.69  Aligned_cols=518  Identities=34%  Similarity=0.555  Sum_probs=466.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999980990225105-8845999999987999999998999
Q 004513           31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTY-GNNGDIVSQVLSDVLLIQSALSEKV  109 (747)
Q Consensus        31 ~~~l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~-~~sG~ilsrl~~Dv~~i~~~~~~~~  109 (747)
                      .+.++++++++..+++.+++.+++...++++..++|.++|++++++|++||+.. +++|++++|+++|+..+++.+...+
T Consensus       750 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l  829 (1284)
T 3g5u_A          750 LFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL  829 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999998399888757899889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             99999999999999889988699999999999999999999999999999999999999999999999469999983014
Q 004513          110 GNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE  189 (747)
Q Consensus       110 ~~~i~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e  189 (747)
                      ..++..+..+++.++++++++|.+++++++.+|+++++..+..+...+...+.++........+.|++.|+++||+|++|
T Consensus       830 ~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e  909 (1284)
T 3g5u_A          830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTRE  909 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             99999999999999999999699999999999999999999999999999999999999999999999889999984659


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999989999999999999999999999970665477799999999999999999999
Q 004513          190 TLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAAT  269 (747)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~  269 (747)
                      +.+.++|.+..+...+...+...+.++..++...+..+..++++|+|++++..+.++.|.++.++.++.....++..+..
T Consensus       910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  989 (1284)
T 3g5u_A          910 QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSS  989 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999990980699999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCC
Q ss_conf             9999999999999999985279888889--99999998664899969999448999871000027841990999828999
Q 004513          270 NFYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG  347 (747)
Q Consensus       270 ~~~~~~~~~~s~~Ri~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~G  347 (747)
                      .+..+.++..++.|+.++++.+++....  .+...+...+.|+++||+|+|+.+++.++|+|+||+|++||++||+||||
T Consensus       990 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sG 1069 (1284)
T 3g5u_A          990 FAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069 (1284)
T ss_dssp             SSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCC
T ss_conf             99999999999999999983887666655566545677785799998997799998700203059976998899988999


Q ss_pred             CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC---CCCHHHHHHHHHHHH
Q ss_conf             98778999473488899756999996168877887622268880367555666889975287---799889999999999
Q 004513          348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQIEEAAKIAH  424 (747)
Q Consensus       348 sGKSTLl~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~---~~~~~~~~~~l~~~~  424 (747)
                      ||||||+++|+|+++|++|+|.+||.|+..++.+++|++++||||+|.+|++|++|||.++.   ..++++++++++.++
T Consensus      1070 sGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~ 1149 (1284)
T 3g5u_A         1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN 1149 (1284)
T ss_dssp             TTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf             97899999994686789977989999800078999970268987787406666999974668778999999999999839


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             99989832235431115889999989999998821205598789985798999999999999999984399869999607
Q 004513          425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR  504 (747)
Q Consensus       425 l~~~i~~lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~  504 (747)
                      +++++..+|+||+|.+||+|.+||||||||++||||++++|+|+|||||||+||+++++.+++.++...+|+|+|+|||+
T Consensus      1150 ~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~ 1229 (1284)
T 3g5u_A         1150 IHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229 (1284)
T ss_dssp             CHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSC
T ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             59999727042456117888933899999999999997499999986875557999999999999986799989999558


Q ss_pred             CCHHHCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             52453178899993966867349678841361899999847630
Q 004513          505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA  548 (747)
Q Consensus       505 l~~l~~~D~I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~~~~  548 (747)
                      ++++..||+|++|++|++++.|+|+|+++.++.|.++++.|...
T Consensus      1230 l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A         1230 LSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp             TTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC--
T ss_pred             HHHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHHC
T ss_conf             79998099899998998999778999984777799999997613


No 8  
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00  E-value=1  Score=673.30  Aligned_cols=512  Identities=34%  Similarity=0.534  Sum_probs=458.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999998099022510588459999999879999999989999999
Q 004513           34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI  113 (747)
Q Consensus        34 l~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~~~~~i  113 (747)
                      +.++++.+...++.++..++....+.++..++|.++|++++++|+.||++ .++|++++|+++|++.+++.+...+..++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~  144 (595)
T 2yl4_A           66 LGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGL  144 (595)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-SCHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999998199999777-98488999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99999999998899886999999999999999999999999999999999999999999999994699999830149999
Q 004513          114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK  193 (747)
Q Consensus       114 ~~~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e~~~~  193 (747)
                      ..++.+++.++++++++|.++++.++.+|+++++...+.+...+..++.++..++..+.+.|.+.|+++||+|++|+.+.
T Consensus       145 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~  224 (595)
T 2yl4_A          145 RAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEI  224 (595)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999999999999981999999999999999999999999999999999999999999999981199999837569999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999899999999999999999999999706654777999999999999999999999999
Q 004513          194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS  273 (747)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~  273 (747)
                      ++|.+..+...+...+.....++...+...+..+..++++++|++++..|.+++|.++++..+......++..+...+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~  304 (595)
T 2yl4_A          225 EKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSE  304 (595)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999869978999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCC-EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCCHH
Q ss_conf             99999999999998527988888999999-998664-8999699994489998710000278419909998289999877
Q 004513          274 FDQGRIAAYRLYEMISRSSSTTNYDGNTL-PSVHGN-IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKS  351 (747)
Q Consensus       274 ~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~~~-i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~GsGKS  351 (747)
                      +.++..+++|+.++++.+++.....+... ++..+. |+++|++|+|+++++.++|+|+||++++|+++||+||||||||
T Consensus       305 ~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKS  384 (595)
T 2yl4_A          305 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKS  384 (595)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSST
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHH
T ss_conf             99999999999999838976677778777767899838999889985899888120112799849988999899999799


Q ss_pred             HHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCCC----CCHHHHHHHHHHHHHHH
Q ss_conf             89994734888997569999961688778876222688803675556668899752877----99889999999999999
Q 004513          352 SIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATLDQIEEAAKIAHAHT  427 (747)
Q Consensus       352 TLl~ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~~----~~~~~~~~~l~~~~l~~  427 (747)
                      ||+++|+|+++|++|+|.++|.|+.+++...+|++++||+|+|++|++|++|||.++..    .++++++++++.+++++
T Consensus       385 TLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~  464 (595)
T 2yl4_A          385 TVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVA  464 (595)
T ss_dssp             HHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHH
T ss_conf             99999825857898379999998111799999732289836883268779999840587766568999999999869799


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCH
Q ss_conf             89832235431115889999989999998821205598789985798999999999999999984399869999607524
Q 004513          428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL  507 (747)
Q Consensus       428 ~i~~lp~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l~~  507 (747)
                      +++.+|+|++|.+|++|.+||||||||++||||++++|++++||||||+||+++++.+.+.+++..+++|+|+|||+++.
T Consensus       465 ~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~  544 (595)
T 2yl4_A          465 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST  544 (595)
T ss_dssp             HHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             99747320135016887868999999999999997599999998866689989999999999999659979999468789


Q ss_pred             HHCCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHHH
Q ss_conf             531788999939668673496788413-618999998476
Q 004513          508 IRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCEE  546 (747)
Q Consensus       508 l~~~D~I~vl~~G~iv~~Gt~~eL~~~-~~~~~~l~~~~~  546 (747)
                      ++.||+|++|++|++++.|+|+|+++. ++.|.++++.+.
T Consensus       545 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~  584 (595)
T 2yl4_A          545 IKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS  584 (595)
T ss_dssp             HHHSSEEEEEETTEEEEEECSCC------C----------
T ss_pred             HHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHH
T ss_conf             9759989999899899978899997478729999999743


No 9  
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00  E-value=1  Score=671.23  Aligned_cols=507  Identities=30%  Similarity=0.475  Sum_probs=460.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999809902251058845999999987999999998999999999
Q 004513           36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN  115 (747)
Q Consensus        36 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~~~~~i~~  115 (747)
                      +++++++..++.++..+.....+.++..++|.++|++++++|+.||++ .++|++++|+++|++.+++.+...+..++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~  149 (582)
T 3b60_A           71 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVRE  149 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999998099999788-9865899999987999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             99999999889988699999999999999999999999999999999999999999999999469999983014999999
Q 004513          116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS  195 (747)
Q Consensus       116 ~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e~~~~~~  195 (747)
                      ++.+++.++++++++|.++++.++..|+++++...+.+...+..++.++..++..+.+.|.+.|+++||+|++|+.+.++
T Consensus       150 ~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~  229 (582)
T 3b60_A          150 GASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR  229 (582)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999999999998099999999999999999999999999999999999999999999999619999983768999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999989999999999999999999999970665477799999999999999999999999999
Q 004513          196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD  275 (747)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~  275 (747)
                      |.+..+...+...+......+...+..++..+..++++++|++++..|.++.|.++++..+......++..+...+..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~  309 (582)
T 3b60_A          230 FDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ  309 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999984999899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHH
Q ss_conf             99999999999852798888899999999866489996999944899987100002784199099982899998778999
Q 004513          276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP  355 (747)
Q Consensus       276 ~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~GsGKSTLl~  355 (747)
                      ++..+++|+.++++.+++... .....++..+.|+++|++|+|+++ +.++|+|+||++++|+++|++||||||||||++
T Consensus       310 ~~~~a~~ri~~~l~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~  387 (582)
T 3b60_A          310 RGMAACQTLFAILDSEQEKDE-GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS  387 (582)
T ss_dssp             HHHHHHHHHHHHHHSCCSCCC-CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf             999999999999759987667-777777888847999889973999-974415615997699989998999998999999


Q ss_pred             HHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             473488899756999996168877887622268880367555666889975287--799889999999999999898322
Q 004513          356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLE  433 (747)
Q Consensus       356 ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~--~~~~~~~~~~l~~~~l~~~i~~lp  433 (747)
                      +|+|+++|++|+|.++|.|+.+.+...+|++++||+|+|++|++|++|||.++.  ..++++++++++.++++++++.+|
T Consensus       388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p  467 (582)
T 3b60_A          388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD  467 (582)
T ss_dssp             HHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHST
T ss_pred             HHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCC
T ss_conf             98610689897697999982306999999608088068747787899998545999989999999999849799998450


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCCE
Q ss_conf             35431115889999989999998821205598789985798999999999999999984399869999607524531788
Q 004513          434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY  513 (747)
Q Consensus       434 ~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l~~l~~~D~  513 (747)
                      +|++|.+|++|.+||||||||++||||++++|++++||||||+||+++++.+.+.+++..+++|+|+|||+++.++.||+
T Consensus       468 ~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~  547 (582)
T 3b60_A          468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE  547 (582)
T ss_dssp             TGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCE
T ss_conf             41145114798878999999999999997289989997865557989999999999999679979999454778985998


Q ss_pred             EEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
Q ss_conf             99993966867349678841361899999847
Q 004513          514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE  545 (747)
Q Consensus       514 I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~  545 (747)
                      |++|++|++++.|+|+|+++.++.|.++++.+
T Consensus       548 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q  579 (582)
T 3b60_A          548 IVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ  579 (582)
T ss_dssp             EEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred             EEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf             99997888988458999987698899999975


No 10 
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00  E-value=1  Score=671.11  Aligned_cols=507  Identities=29%  Similarity=0.443  Sum_probs=460.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999809902251058845999999987999999998999999999
Q 004513           36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN  115 (747)
Q Consensus        36 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~f~~ll~~~~~ff~~~~~sG~ilsrl~~Dv~~i~~~~~~~~~~~i~~  115 (747)
                      +++++++..++.++..++....+.++..++|.++|++++++|+.||++ .++|++++|+++|++.+++.+...+..++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~  149 (582)
T 3b5x_A           71 ILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-ESTGGLLSRITYDSEQVAGATSRALVSIVRE  149 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999998699999778-9878999999988999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             99999999889988699999999999999999999999999999999999999999999999469999983014999999
Q 004513          116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS  195 (747)
Q Consensus       116 ~~~~i~~lii~~~~~w~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIk~~~~e~~~~~~  195 (747)
                      ++.+++.++++++++|.++++.++..|+++++...+.+...+..++.++..++..+.+.|.+.|+++||+|++|+.+.++
T Consensus       150 ~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~  229 (582)
T 3b5x_A          150 GASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR  229 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999999999998299999999999999999999999999999999999999999999999519999970875999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999989999999999999999999999970665477799999999999999999999999999
Q 004513          196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD  275 (747)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~  275 (747)
                      |.+..+...+...+......+...+..++..+..++++++|++++..|.++.|.++++..++..+..++..+...+..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~  309 (582)
T 3b5x_A          230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ  309 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999985998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHH
Q ss_conf             99999999999852798888899999999866489996999944899987100002784199099982899998778999
Q 004513          276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP  355 (747)
Q Consensus       276 ~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~~~L~~isl~i~~G~~vaivG~~GsGKSTLl~  355 (747)
                      ++..+++|+.++++.+++... .....++..+.|+++|++|+|+++ +.++|+|+||++++|+++|++||||||||||++
T Consensus       310 ~~~~a~~ri~~~l~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~  387 (582)
T 3b5x_A          310 RGMAACQTLFGLMDLETERDN-GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN  387 (582)
T ss_pred             HHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf             999999999999758976777-777777788828999989972899-865400416998799989998999997999999


Q ss_pred             HHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             473488899756999996168877887622268880367555666889975287--799889999999999999898322
Q 004513          356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLE  433 (747)
Q Consensus       356 ll~g~~~p~~G~I~i~G~di~~~~~~~lr~~i~~v~Q~~~lf~~TireNi~~g~--~~~~~~~~~~l~~~~l~~~i~~lp  433 (747)
                      +|+|+++|++|+|.++|.|+.+.+...+|++++||+|+|++|++|++|||.++.  ..++++++++++.++++++++.+|
T Consensus       388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p  467 (582)
T 3b5x_A          388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP  467 (582)
T ss_pred             HHHCCCCCCCCEEEECCEEHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCC
T ss_conf             99657789998798999985638899996485898279905310299998566889999999999999879899998476


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCCE
Q ss_conf             35431115889999989999998821205598789985798999999999999999984399869999607524531788
Q 004513          434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY  513 (747)
Q Consensus       434 ~G~~t~vge~G~~LSGGQkQRiaLARAl~~~p~illLDEptsalD~~~~~~i~~~i~~~~~~~TvIlvtH~l~~l~~~D~  513 (747)
                      +|++|.+|++|.+||||||||++||||++++|++++||||||+||+++++.+.+.+++..+++|+|+|||+++.++.||+
T Consensus       468 ~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~  547 (582)
T 3b5x_A          468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE  547 (582)
T ss_pred             CCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCE
T ss_conf             53345106888847999999999999997499999997854468999999999999997289989999368899981998


Q ss_pred             EEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
Q ss_conf             99993966867349678841361899999847
Q 004513          514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE  545 (747)
Q Consensus       514 I~vl~~G~iv~~Gt~~eL~~~~~~~~~l~~~~  545 (747)
                      |++|++|++++.|+|+|+++.++.|.++++.+
T Consensus       548 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q  579 (582)
T 3b5x_A          548 ILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ  579 (582)
T ss_pred             EEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf             99998998999778999984885899999986


Done!