Query 004514
Match_columns 747
No_of_seqs 260 out of 708
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 00:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 6E-111 1E-115 916.1 40.1 370 374-745 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.9 0.058 1.2E-06 56.4 17.8 190 456-697 34-225 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.0 0.71 1.5E-05 47.1 18.9 114 470-614 35-150 (231)
4 TIGR00740 methyltransferase, p 95.9 0.19 4E-06 52.0 14.4 104 480-611 53-157 (239)
5 PLN02233 ubiquinone biosynthes 95.1 2.7 5.8E-05 44.6 19.8 114 470-609 63-176 (261)
6 PRK14103 trans-aconitate 2-met 94.0 1.1 2.4E-05 46.9 13.9 114 471-622 20-133 (255)
7 TIGR02716 C20_methyl_CrtF C-20 93.6 1 2.2E-05 48.5 13.0 113 469-614 138-254 (306)
8 PF13489 Methyltransf_23: Meth 93.1 1.2 2.7E-05 41.8 11.4 97 478-617 20-118 (161)
9 PRK06202 hypothetical protein; 92.4 2.4 5.1E-05 43.7 13.2 144 442-613 22-165 (232)
10 TIGR01934 MenG_MenH_UbiE ubiqu 92.3 13 0.00028 37.0 19.5 114 468-612 27-140 (223)
11 PF01209 Ubie_methyltran: ubiE 92.3 0.66 1.4E-05 48.7 9.0 110 471-609 38-147 (233)
12 PF13847 Methyltransf_31: Meth 89.7 2.4 5.2E-05 40.6 9.5 105 479-612 2-107 (152)
13 PLN02336 phosphoethanolamine N 89.6 17 0.00036 41.7 17.7 110 471-612 257-366 (475)
14 PRK00216 ubiE ubiquinone/menaq 87.1 36 0.00077 34.3 17.5 42 473-520 44-85 (239)
15 COG2226 UbiE Methylase involve 87.1 35 0.00075 36.5 16.8 193 453-699 23-221 (238)
16 PLN02396 hexaprenyldihydroxybe 86.4 17 0.00037 40.2 14.7 101 481-615 132-236 (322)
17 PRK08317 hypothetical protein; 86.4 38 0.00082 33.9 16.5 43 472-520 11-53 (241)
18 PRK01683 trans-aconitate 2-met 85.3 6.6 0.00014 40.9 10.4 45 469-520 20-64 (258)
19 PF13649 Methyltransf_25: Meth 84.5 3.7 8.1E-05 36.5 7.0 97 484-607 1-99 (101)
20 PTZ00098 phosphoethanolamine N 84.4 41 0.00089 35.8 16.0 46 466-519 38-83 (263)
21 PLN02585 magnesium protoporphy 84.4 29 0.00062 38.4 15.2 103 480-613 144-248 (315)
22 PF08241 Methyltransf_11: Meth 83.3 4.7 0.0001 34.2 6.9 93 485-611 1-93 (95)
23 PF09243 Rsm22: Mitochondrial 81.0 11 0.00023 40.6 10.1 140 463-632 12-156 (274)
24 TIGR00477 tehB tellurite resis 80.0 14 0.00031 37.3 10.2 111 467-610 17-128 (195)
25 smart00138 MeTrc Methyltransfe 79.4 3.5 7.5E-05 44.0 5.8 52 478-535 97-150 (264)
26 TIGR02021 BchM-ChlM magnesium 79.4 61 0.0013 33.0 14.6 58 465-537 38-97 (219)
27 PF12847 Methyltransf_18: Meth 78.8 10 0.00022 33.7 7.8 103 483-612 4-108 (112)
28 PRK05785 hypothetical protein; 76.8 72 0.0016 33.2 14.4 92 481-612 52-144 (226)
29 TIGR02072 BioC biotin biosynth 76.4 88 0.0019 31.4 15.5 34 480-520 34-67 (240)
30 COG2227 UbiG 2-polyprenyl-3-me 76.3 6.9 0.00015 41.8 6.8 99 479-610 58-156 (243)
31 PLN02244 tocopherol O-methyltr 75.6 27 0.00059 38.5 11.5 98 480-609 118-217 (340)
32 PRK11036 putative S-adenosyl-L 73.3 48 0.001 34.7 12.2 110 471-611 36-145 (255)
33 PRK11207 tellurite resistance 72.5 38 0.00083 34.2 10.9 109 469-610 19-129 (197)
34 TIGR03438 probable methyltrans 71.2 50 0.0011 35.8 12.0 109 482-613 65-176 (301)
35 PF02353 CMAS: Mycolic acid cy 70.7 32 0.0007 37.1 10.4 108 470-609 52-160 (273)
36 PRK11873 arsM arsenite S-adeno 69.4 1.5E+02 0.0033 31.1 15.4 97 482-610 79-178 (272)
37 PRK12335 tellurite resistance 69.0 38 0.00082 36.4 10.5 95 483-610 123-218 (287)
38 PRK05134 bifunctional 3-demeth 68.7 1.4E+02 0.0031 30.4 14.3 101 478-611 46-147 (233)
39 PF03291 Pox_MCEL: mRNA cappin 68.4 44 0.00096 37.2 11.1 119 480-617 62-189 (331)
40 PRK10258 biotin biosynthesis p 64.1 1.5E+02 0.0033 30.6 13.6 43 469-520 31-73 (251)
41 COG2230 Cfa Cyclopropane fatty 63.8 1E+02 0.0022 33.9 12.4 113 471-615 63-178 (283)
42 PF00891 Methyltransf_2: O-met 59.1 29 0.00062 35.9 7.1 43 471-520 91-133 (241)
43 PLN02336 phosphoethanolamine N 59.0 1.2E+02 0.0027 34.7 12.8 113 470-613 27-140 (475)
44 TIGR00138 gidB 16S rRNA methyl 58.3 1.3E+02 0.0029 30.2 11.5 96 481-613 43-140 (181)
45 TIGR02081 metW methionine bios 56.8 1.2E+02 0.0026 30.3 10.9 39 471-519 6-44 (194)
46 COG1341 Predicted GTPase or GT 56.8 1E+02 0.0022 35.4 11.3 154 466-667 92-254 (398)
47 PLN02490 MPBQ/MSBQ methyltrans 56.5 1.6E+02 0.0036 33.0 12.8 33 480-519 113-145 (340)
48 PRK15068 tRNA mo(5)U34 methylt 56.0 3.2E+02 0.0069 30.2 15.2 139 442-611 71-222 (322)
49 KOG4300 Predicted methyltransf 53.2 2.1E+02 0.0045 30.7 11.9 123 474-630 70-196 (252)
50 PRK00274 ksgA 16S ribosomal RN 49.4 62 0.0013 34.6 7.9 56 456-520 13-73 (272)
51 TIGR03439 methyl_EasF probable 47.2 2.2E+02 0.0048 31.7 11.9 140 482-640 78-233 (319)
52 PRK00107 gidB 16S rRNA methylt 45.1 3.5E+02 0.0076 27.5 13.2 97 481-614 46-144 (187)
53 TIGR00091 tRNA (guanine-N(7)-) 43.7 1.1E+02 0.0025 30.7 8.4 32 481-519 17-48 (194)
54 TIGR00452 methyltransferase, p 43.3 2E+02 0.0044 31.8 10.9 40 472-519 113-152 (314)
55 TIGR03587 Pse_Me-ase pseudamin 41.7 2.3E+02 0.005 29.1 10.3 31 483-520 46-76 (204)
56 PF13679 Methyltransf_32: Meth 40.9 63 0.0014 31.0 5.8 40 477-520 22-62 (141)
57 PRK15001 SAM-dependent 23S rib 40.9 2.5E+02 0.0054 32.0 11.3 108 483-615 231-340 (378)
58 PRK11705 cyclopropane fatty ac 40.1 2.6E+02 0.0056 31.7 11.3 53 471-537 158-210 (383)
59 PF03848 TehB: Tellurite resis 38.9 4.7E+02 0.01 27.1 13.2 108 470-610 20-128 (192)
60 PRK07580 Mg-protoporphyrin IX 38.8 2E+02 0.0042 29.1 9.3 44 479-537 62-105 (230)
61 PRK10909 rsmD 16S rRNA m(2)G96 37.6 3.8E+02 0.0083 27.6 11.2 105 482-619 55-163 (199)
62 PRK06922 hypothetical protein; 37.6 2.4E+02 0.0051 34.7 10.9 114 472-610 413-532 (677)
63 smart00650 rADc Ribosomal RNA 36.0 1.9E+02 0.004 28.4 8.3 41 471-520 4-44 (169)
64 PRK09489 rsmC 16S ribosomal RN 34.9 5.3E+02 0.011 28.9 12.5 106 483-616 199-304 (342)
65 COG2942 N-acyl-D-glucosamine 2 34.6 2.5E+02 0.0055 32.3 10.0 89 446-554 182-285 (388)
66 cd00635 PLPDE_III_YBL036c_like 33.4 2.4E+02 0.0051 29.1 9.0 71 480-554 117-198 (222)
67 PRK11088 rrmA 23S rRNA methylt 32.1 1.6E+02 0.0035 31.2 7.7 70 445-520 52-121 (272)
68 smart00828 PKS_MT Methyltransf 31.9 2.8E+02 0.0061 28.0 9.2 98 483-611 2-100 (224)
69 TIGR03183 DNA_S_dndC putative 29.1 1.2E+02 0.0026 35.4 6.5 81 470-554 3-91 (447)
70 TIGR01716 RGG_Cterm transcript 28.2 1.1E+02 0.0023 31.0 5.4 55 374-428 127-182 (220)
71 TIGR03534 RF_mod_PrmC protein- 27.3 2.5E+02 0.0054 28.7 7.9 78 480-580 87-165 (251)
72 TIGR02469 CbiT precorrin-6Y C5 26.9 1.8E+02 0.0038 25.9 6.0 31 483-520 22-52 (124)
73 PRK00121 trmB tRNA (guanine-N( 26.9 6.4E+02 0.014 25.6 10.7 34 480-520 40-73 (202)
74 TIGR02129 hisA_euk phosphoribo 26.8 71 0.0015 34.5 3.9 26 477-506 50-75 (253)
75 COG2242 CobL Precorrin-6B meth 25.8 1.1E+02 0.0023 31.8 4.8 53 473-541 27-82 (187)
76 PF07522 DRMBL: DNA repair met 25.5 2.3E+02 0.005 26.1 6.6 36 569-614 71-106 (110)
77 PRK03646 dadX alanine racemase 25.5 97 0.0021 34.6 4.8 54 480-540 117-175 (355)
78 PRK01544 bifunctional N5-gluta 25.4 1.2E+03 0.025 27.6 14.2 44 481-537 139-182 (506)
79 PF11020 DUF2610: Domain of un 25.2 75 0.0016 28.8 3.1 22 528-549 48-69 (82)
80 PLN02446 (5-phosphoribosyl)-5- 25.1 81 0.0018 34.3 4.0 27 477-504 55-81 (262)
81 cd06815 PLPDE_III_AR_like_1 Ty 24.8 4.5E+02 0.0098 29.2 9.9 33 481-517 118-155 (353)
82 PRK10867 signal recognition pa 24.4 4.4E+02 0.0095 30.7 9.9 53 376-428 29-88 (433)
83 PF13552 DUF4127: Protein of u 24.1 1.1E+02 0.0024 35.9 5.2 63 579-644 77-147 (497)
84 COG4106 Tam Trans-aconitate me 24.0 1.6E+02 0.0035 31.7 5.7 111 476-623 26-137 (257)
85 PTZ00338 dimethyladenosine tra 22.7 3.4E+02 0.0073 29.7 8.2 40 472-520 28-67 (294)
86 PLN02232 ubiquinone biosynthes 22.5 7.3E+02 0.016 24.2 12.5 37 565-609 38-75 (160)
87 TIGR00044 pyridoxal phosphate 22.4 1.6E+02 0.0034 30.8 5.5 61 480-544 121-188 (229)
88 PF02527 GidB: rRNA small subu 22.2 1.6E+02 0.0034 30.2 5.2 59 483-559 51-109 (184)
89 cd00430 PLPDE_III_AR Type III 22.1 3.3E+02 0.0071 30.1 8.1 72 480-555 119-200 (367)
90 TIGR01626 ytfJ_HI0045 conserve 22.1 2.1E+02 0.0046 29.4 6.1 113 480-605 59-182 (184)
91 PRK14896 ksgA 16S ribosomal RN 21.3 3.8E+02 0.0082 28.4 8.1 46 466-520 11-60 (258)
92 TIGR00492 alr alanine racemase 20.9 2.2E+02 0.0048 31.5 6.5 72 480-555 120-202 (367)
93 PRK10507 bifunctional glutathi 20.4 2.8E+02 0.0061 33.8 7.5 84 488-583 354-443 (619)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=6e-111 Score=916.11 Aligned_cols=370 Identities=45% Similarity=0.793 Sum_probs=357.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCC---HHHHHHH
Q 004514 374 LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTS---AADILKA 450 (747)
Q Consensus 374 L~~LLl~CAqAVa~gd~~~A~~lL~~Irq~sSp~GD~~QRLA~yFa~AL~aRL~gtgs~~y~~l~s~~~s---~~~~lkA 450 (747)
|++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+.....+ ..++++|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999877654443 6789999
Q ss_pred HHHHHhhcCccchhhHhHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHH
Q 004514 451 YQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERV 530 (747)
Q Consensus 451 y~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~l 530 (747)
|++|++.|||.||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++ +...+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 68889
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEe-cccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcE
Q 004514 531 EETGRRLADYAKDFNVPFEYNAI-AKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHM 609 (747)
Q Consensus 531 eetG~RL~~~A~~~gVpFeF~~I-a~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~V 609 (747)
++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||+|++....+||+.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999996 56999999999999999999999999999999998888889999999999999999
Q ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHhHHhhhhCCCCCHHHHHHHHHHHHHHHhHhhhccCCcccccccchhhHHHH
Q 004514 610 FIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVR 689 (747)
Q Consensus 610 fv~~e~n~~~nsp~F~~RF~EAL~hYsAlFDsLda~~pr~~~eR~~iEr~~~greI~NvVAcEG~eRvER~Et~~qWq~R 689 (747)
||++|+|++||+|+|++||.|||+||+|+||+||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCCHHHHHHHHHHHhccCCCCcEEEecCCEEEEeECCceeEEEeeee
Q 004514 690 NLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK 745 (747)
Q Consensus 690 ~~rAGF~~lpLs~~~v~qar~ll~~~y~~~f~v~ed~~wLlLgWKgr~L~a~SaW~ 745 (747)
|.+|||+++||+.+++.||+.+|+.++++||.|+++++||+|||||+||+++||||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999986678999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.90 E-value=0.058 Score=56.41 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=95.4
Q ss_pred hhcCccchhhHhHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHH
Q 004514 456 AACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGR 535 (747)
Q Consensus 456 ~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~ 535 (747)
...|.....|-.+...+-..+. ..-+|+|+|-+.|.-- ..|+.+- ..|..++||||.. .+.++.+.+
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~----~~l~~~~-~~~~~~v~gvD~S------~~ml~~A~~ 100 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAAT----LSVRRNI-HHDNCKIIAIDNS------PAMIERCRR 100 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHH----HHHHHhc-CCCCCeEEEEeCC------HHHHHHHHH
Confidence 4456666655555543322222 2357999999998632 3344321 1256899999963 345666666
Q ss_pred HHHHHHHhcCCcEEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCc-EEEEE
Q 004514 536 RLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPH-MFIHG 613 (747)
Q Consensus 536 RL~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~-Vfv~~ 613 (747)
++.++.. .-.++|. ...++++. .....+++ |.+.||++.++ .+..+|+.| +.|+|. +++++
T Consensus 101 ~~~~~~~--~~~v~~~--~~d~~~~~-----~~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 101 HIDAYKA--PTPVDVI--EGDIRDIA-----IENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred HHHhcCC--CCCeEEE--eCChhhCC-----CCCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 6544321 1134443 23333332 22233444 44667887542 245666666 668997 45555
Q ss_pred eecCCCCCCchHHHHHHHHHHHHHHhHHhhhhCCCCCHHHHHHHHHHHHHHHhHhhhccCCcccccccchhhHHHHHHhC
Q 004514 614 ITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRA 693 (747)
Q Consensus 614 e~n~~~nsp~F~~RF~EAL~hYsAlFDsLda~~pr~~~eR~~iEr~~~greI~NvVAcEG~eRvER~Et~~qWq~R~~rA 693 (747)
+.-... .+..-.++.+....|. .....+ ...+++. .... +++-++++..+...+++.|
T Consensus 164 e~~~~~-~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~---------~~~~~~~~~~~~~~~L~~a 221 (247)
T PRK15451 164 EKFSFE-DAKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSML---------ENVMLTDSVETHKARLHKA 221 (247)
T ss_pred EecCCC-cchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHH---------HhhcccCCHHHHHHHHHHc
Confidence 532222 2222333333222221 111121 1112210 1111 2245667888888899999
Q ss_pred CCcc
Q 004514 694 GFVQ 697 (747)
Q Consensus 694 GF~~ 697 (747)
||+.
T Consensus 222 GF~~ 225 (247)
T PRK15451 222 GFEH 225 (247)
T ss_pred Cchh
Confidence 9985
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.98 E-value=0.71 Score=47.07 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-E
Q 004514 470 KTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-F 548 (747)
Q Consensus 470 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-F 548 (747)
+.++..+.-...-+|+|+|.+.|. +...|+.+ .+|..++||||.. .+.++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~----~~~~la~~--~~~~~~v~gvD~s------~~~~~~a~~~~~----~~~~~~v 98 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD----WSIALAEA--VGPEGHVIGLDFS------ENMLSVGRQKVK----DAGLHNV 98 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH----HHHHHHHH--hCCCCEEEEEECC------HHHHHHHHHHHH----hcCCCce
Confidence 445555543344589999999996 23344433 1345699999963 344555555543 23443 2
Q ss_pred EEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHH-HHHhhCCcEEEEEe
Q 004514 549 EYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLN-FIRKINPHMFIHGI 614 (747)
Q Consensus 549 eF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~-~Ir~L~P~Vfv~~e 614 (747)
+| +....+++.. ....=.+|+ +.+.+|++.+ + ..+|+ ..|.|+|.-.++..
T Consensus 99 ~~--~~~d~~~~~~---~~~~fD~V~--~~~~l~~~~~-------~-~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 99 EL--VHGNAMELPF---DDNSFDYVT--IGFGLRNVPD-------Y-MQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred EE--EEechhcCCC---CCCCccEEE--EecccccCCC-------H-HHHHHHHHHHcCcCeEEEEE
Confidence 22 2222222221 111113444 3355677643 2 34555 45778998655443
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.90 E-value=0.19 Score=52.01 Aligned_cols=104 Identities=20% Similarity=0.297 Sum_probs=58.9
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccc
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDT 559 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~ 559 (747)
..-+|+|+|.+.|. ++..|+++-. .|..++||||+. .+.++.+.+++.++.. +..++|. ...+++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s------~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNS------QPMVERCRQHIAAYHS--EIPVEIL--CNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCC------HHHHHHHHHHHHhcCC--CCCeEEE--ECChhh
Confidence 44579999999994 4455554421 256899999963 3456666666644321 2233442 233333
Q ss_pred cCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEE
Q 004514 560 IQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFI 611 (747)
Q Consensus 560 l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv 611 (747)
+.. ....+ |-|.+.|||+.++ .+..+|+.| |.|+|.-.+
T Consensus 118 ~~~-----~~~d~--v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l 157 (239)
T TIGR00740 118 VEI-----KNASM--VILNFTLQFLPPE------DRIALLTKIYEGLNPNGVL 157 (239)
T ss_pred CCC-----CCCCE--EeeecchhhCCHH------HHHHHHHHHHHhcCCCeEE
Confidence 322 22233 4466678888643 234566666 668998544
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.06 E-value=2.7 Score=44.64 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=63.1
Q ss_pred HHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 004514 470 KTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFE 549 (747)
Q Consensus 470 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFe 549 (747)
..+++.+.-...-+|+|+|.+.|. +...|+.+- +|.-+|||||.. .+.++.+.+|....++...-..+
T Consensus 63 ~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S------~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 63 RMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFS------SEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECC------HHHHHHHHHHhhhhhhccCCCeE
Confidence 333444433345689999999997 334555542 234599999963 35566665554322222222233
Q ss_pred EEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcE
Q 004514 550 YNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHM 609 (747)
Q Consensus 550 F~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~V 609 (747)
|.. ...+ ++....+.+=+|-|.+.|||+.| |...+-+..|-|+|.-
T Consensus 131 ~~~--~d~~-----~lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 131 WIE--GDAT-----DLPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGS 176 (261)
T ss_pred EEE--cccc-----cCCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCc
Confidence 322 2222 33343444555667778888753 4444445557799984
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.04 E-value=1.1 Score=46.89 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=62.4
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF 550 (747)
.+++.+.-...-+|+|+|-+.| .+...|+.+- |..++||||.. ...++ .|+..++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G----~~~~~l~~~~---p~~~v~gvD~s------~~~~~--------~a~~~~~~~~- 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPG----NLTRYLARRW---PGAVIEALDSS------PEMVA--------AARERGVDAR- 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCC----HHHHHHHHHC---CCCEEEEEECC------HHHHH--------HHHhcCCcEE-
Confidence 4566665455578999999999 3556677652 34689999963 22233 3344455442
Q ss_pred EEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEEEeecCCCCCC
Q 004514 551 NAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAP 622 (747)
Q Consensus 551 ~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp 622 (747)
....+++. ..+.+=+|-|.+.|||+.| +...+-+..+.|+|.-.++....++...+
T Consensus 78 ---~~d~~~~~------~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 133 (255)
T PRK14103 78 ---TGDVRDWK------PKPDTDVVVSNAALQWVPE-------HADLLVRWVDELAPGSWIAVQVPGNFDAP 133 (255)
T ss_pred ---EcChhhCC------CCCCceEEEEehhhhhCCC-------HHHHHHHHHHhCCCCcEEEEEcCCCcCCh
Confidence 11222221 1123334444555778754 33444445577999865544443443344
No 7
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.59 E-value=1 Score=48.47 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=62.1
Q ss_pred hHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-
Q 004514 469 NKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP- 547 (747)
Q Consensus 469 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp- 547 (747)
.+.|++.+.-.+.-+|+|+|-+.| .+...++++- |.+++|+++.| +.++.+.++ ++..|+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G----~~~~~~~~~~---p~~~~~~~D~~-------~~~~~a~~~----~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIG----DISAAMLKHF---PELDSTILNLP-------GAIDLVNEN----AAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchh----HHHHHHHHHC---CCCEEEEEecH-------HHHHHHHHH----HHhCCccc
Confidence 566777776556679999999998 3445555553 67899999863 335544443 4444553
Q ss_pred -EEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCc-EEEEEe
Q 004514 548 -FEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPH-MFIHGI 614 (747)
Q Consensus 548 -FeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~-Vfv~~e 614 (747)
++|.. ....+. .+....++++. ..||+..++ ....+|+.+ +.|+|. .+++.+
T Consensus 200 rv~~~~--~d~~~~-----~~~~~D~v~~~--~~lh~~~~~------~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 200 RMRGIA--VDIYKE-----SYPEADAVLFC--RILYSANEQ------LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred eEEEEe--cCccCC-----CCCCCCEEEeE--hhhhcCChH------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 33333 222111 12223343332 345555432 124567666 679996 343444
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.13 E-value=1.2 Score=41.84 Aligned_cols=97 Identities=21% Similarity=0.336 Sum_probs=54.5
Q ss_pred cCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccc
Q 004514 478 NSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRW 557 (747)
Q Consensus 478 g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~ 557 (747)
..+.-.|+|+|-+.| . +.+.|+.+ |. ++|||+.. ...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~------~~~~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDIS------PQMIEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESS------HHHHHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECC------HHHHhh-----------hhhhhhhhhhh---
Confidence 456679999999999 3 45555554 22 99999963 222322 22222211111
Q ss_pred cccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEE-EEEeecC
Q 004514 558 DTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMF-IHGITNG 617 (747)
Q Consensus 558 E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vf-v~~e~n~ 617 (747)
+.....+-+=+|-|...|+|+.| |. .+|+.| +.|+|.-+ ++...+.
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~~-~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------PE-EFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------HH-HHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------HH-HHHHHHHHhcCCCCEEEEEEcCC
Confidence 11123344556666688899974 33 455555 66999744 4444443
No 9
>PRK06202 hypothetical protein; Provisional
Probab=92.42 E-value=2.4 Score=43.69 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHhhcCccchhhHhHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCC
Q 004514 442 TSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQ 521 (747)
Q Consensus 442 ~s~~~~lkAy~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~ 521 (747)
..++++.+.|+.|-.+-++..--+-+-.+.+...+...+...|+|+|-|.|. +...|.....+ ..|..+|||||..
T Consensus 22 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s- 97 (232)
T PRK06202 22 CDPARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPD- 97 (232)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCC-
Confidence 3455565666555444333321122222333333333456789999999995 33333222221 1345799999963
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHH
Q 004514 522 PGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNF 601 (747)
Q Consensus 522 ~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~ 601 (747)
.+.++.+.+++ ..-++.+.. +. .+++...++.+=+|-|.+.|||+.|+. ...+|+.
T Consensus 98 -----~~~l~~a~~~~----~~~~~~~~~--~~-------~~~l~~~~~~fD~V~~~~~lhh~~d~~------~~~~l~~ 153 (232)
T PRK06202 98 -----PRAVAFARANP----RRPGVTFRQ--AV-------SDELVAEGERFDVVTSNHFLHHLDDAE------VVRLLAD 153 (232)
T ss_pred -----HHHHHHHHhcc----ccCCCeEEE--Ee-------cccccccCCCccEEEECCeeecCChHH------HHHHHHH
Confidence 23344433322 122455443 21 111211233444555566789997641 3467777
Q ss_pred HHhhCCcEEEEE
Q 004514 602 IRKINPHMFIHG 613 (747)
Q Consensus 602 Ir~L~P~Vfv~~ 613 (747)
+.++--.++++.
T Consensus 154 ~~r~~~~~~~i~ 165 (232)
T PRK06202 154 SAALARRLVLHN 165 (232)
T ss_pred HHHhcCeeEEEe
Confidence 755443444433
No 10
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.29 E-value=13 Score=37.03 Aligned_cols=114 Identities=13% Similarity=0.240 Sum_probs=59.3
Q ss_pred HhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 004514 468 ANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP 547 (747)
Q Consensus 468 ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp 547 (747)
.-+.+++.+......+|+|+|-+.|. +...++.+ +|+..++|+|+.. ...++.+.+++. ..-.
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~------~~~~~~~~~~~~-----~~~~ 89 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS------SEMLEVAKKKSE-----LPLN 89 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC------HHHHHHHHHHhc-----cCCC
Confidence 33455666655567899999999884 33344443 2344789999963 233444444432 1222
Q ss_pred EEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEE
Q 004514 548 FEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIH 612 (747)
Q Consensus 548 FeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~ 612 (747)
..|.. ....++. ...+.+=+|-|.+.+|++.+ +...+-+..+.|+|.-.++
T Consensus 90 i~~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 90 IEFIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLV 140 (223)
T ss_pred ceEEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEE
Confidence 33322 2222211 12233334445556677643 3344444556689985443
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=92.27 E-value=0.66 Score=48.69 Aligned_cols=110 Identities=17% Similarity=0.279 Sum_probs=60.8
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF 550 (747)
.+++.+...+-.+|+|.+.+.|--+. .|+++.+ |.-+|||+|.. .+-|+.+.+++.+.... + .+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~----~l~~~~~--~~~~v~~vD~s------~~ML~~a~~k~~~~~~~-~--i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTR----ELARRVG--PNGKVVGVDIS------PGMLEVARKKLKREGLQ-N--IEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHH----HHGGGSS-----EEEEEES-------HHHHHHHHHHHHHTT---S--EEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHH----HHHHHCC--CccEEEEecCC------HHHHHHHHHHHHhhCCC-C--eeE
Confidence 34555556666799999999995443 3454422 44599999973 45567776777655432 3 233
Q ss_pred EEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcE
Q 004514 551 NAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHM 609 (747)
Q Consensus 551 ~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~V 609 (747)
. .-+.++|....+.+=+|-|.|.||++.| +...+-...|-|+|.-
T Consensus 103 v-------~~da~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 103 V-------QGDAEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGG 147 (233)
T ss_dssp E-------E-BTTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEE
T ss_pred E-------EcCHHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCe
Confidence 1 1234556666688889999999999975 3344555667799964
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=89.68 E-value=2.4 Score=40.58 Aligned_cols=105 Identities=17% Similarity=0.291 Sum_probs=57.7
Q ss_pred CceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEecccc
Q 004514 479 SMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRW 557 (747)
Q Consensus 479 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-FeF~~Ia~~~ 557 (747)
.+..+|+|+|.+.|.. ...|+.+- .|..+|||||.. .+.+ .+..+.+++.+++ .+|.. ..+
T Consensus 2 ~~~~~iLDlGcG~G~~----~~~l~~~~--~~~~~i~gvD~s------~~~i----~~a~~~~~~~~~~ni~~~~--~d~ 63 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRL----LIQLAKEL--NPGAKIIGVDIS------EEMI----EYAKKRAKELGLDNIEFIQ--GDI 63 (152)
T ss_dssp TTTSEEEEET-TTSHH----HHHHHHHS--TTTSEEEEEESS------HHHH----HHHHHHHHHTTSTTEEEEE--SBT
T ss_pred CCCCEEEEecCcCcHH----HHHHHHhc--CCCCEEEEEECc------HHHH----HHhhcccccccccccceEE--eeh
Confidence 3567899999999943 33344221 134569999973 2333 4444567777887 55543 444
Q ss_pred cccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEE
Q 004514 558 DTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIH 612 (747)
Q Consensus 558 E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~ 612 (747)
+++... +. +.+=+|.+...|+++.+ +...+-+.++.|+|...++
T Consensus 64 ~~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 64 EDLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp TCGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEE
T ss_pred hccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEE
Confidence 444322 22 22333434344466643 3344445567899985543
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.58 E-value=17 Score=41.67 Aligned_cols=110 Identities=11% Similarity=0.100 Sum_probs=59.8
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF 550 (747)
.+++.+.-.+.-+|+|+|.+.|. +...|+.+.+ .++|||+.. .+.++.+.++. ...+...+|
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS------~~~l~~A~~~~----~~~~~~v~~ 318 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS------VNMISFALERA----IGRKCSVEF 318 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHHHHh----hcCCCceEE
Confidence 33444332334589999999994 4455776543 489999974 34454444332 233334555
Q ss_pred EEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEE
Q 004514 551 NAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIH 612 (747)
Q Consensus 551 ~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~ 612 (747)
... .+.++ .+..+.+=+|-|...++|+.| |...+-...|.|+|.-.++
T Consensus 319 ~~~--d~~~~-----~~~~~~fD~I~s~~~l~h~~d-------~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 319 EVA--DCTKK-----TYPDNSFDVIYSRDTILHIQD-------KPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred EEc--CcccC-----CCCCCCEEEEEECCcccccCC-------HHHHHHHHHHHcCCCeEEE
Confidence 332 22221 122233445556666788754 3344444557799986543
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=87.14 E-value=36 Score=34.32 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=26.7
Q ss_pred HhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 473 MSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 473 LeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
++.+.-....+|+|+|-+.|. +...|+.+ +|+..++|+++..
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s 85 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS 85 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC
Confidence 343333345789999999984 33334433 2457899999963
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=87.06 E-value=35 Score=36.46 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=107.7
Q ss_pred HHHhhcCccchhh-HhHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHH
Q 004514 453 LYLAACPFRKLSN-FTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVE 531 (747)
Q Consensus 453 ~f~~~~Pf~kfa~-f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~le 531 (747)
.|-....++.|+. .+=+++..+.+.-.+--+|+|.+-|-| .|. -.|+++-| .-+|||||.. ...|+
T Consensus 23 ~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG-d~a---~~~~k~~g---~g~v~~~D~s------~~ML~ 89 (238)
T COG2226 23 KYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG-DMA---LLLAKSVG---TGEVVGLDIS------ESMLE 89 (238)
T ss_pred HHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc-HHH---HHHHHhcC---CceEEEEECC------HHHHH
Confidence 3334455666654 445555555554346789999999988 333 34444433 7899999963 45566
Q ss_pred HHHHHHHHHHHhcCCc-EEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcE
Q 004514 532 ETGRRLADYAKDFNVP-FEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHM 609 (747)
Q Consensus 532 etG~RL~~~A~~~gVp-FeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~V 609 (747)
...+|+.+ .|+- ++| |... .+.|....+-+=+|.|.|.|+|+.| .+.+|+-+ |=|+|..
T Consensus 90 ~a~~k~~~----~~~~~i~f--v~~d-----Ae~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG 150 (238)
T COG2226 90 VAREKLKK----KGVQNVEF--VVGD-----AENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGG 150 (238)
T ss_pred HHHHHhhc----cCccceEE--EEec-----hhhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCe
Confidence 66555544 2322 444 3233 3445555567778999999999975 35666655 6699998
Q ss_pred EEEEeecCCCCCCchHHHHHHHHH-HHHH-HhHHhhhhCCCCCHHH-HHHHHHHHHHHHhHhhhccCCcccccccchhhH
Q 004514 610 FIHGITNGAYNAPFFVTRFREALF-HFSA-MFDMLETIVPREDRER-MVIEKDIFGREALNVVACEGWERVERPETYKQW 686 (747)
Q Consensus 610 fv~~e~n~~~nsp~F~~RF~EAL~-hYsA-lFDsLda~~pr~~~eR-~~iEr~~~greI~NvVAcEG~eRvER~Et~~qW 686 (747)
..++..=.....+- |+.+++ ||.. ++=.+......+..+. -+.|- | .+.-..++..++
T Consensus 151 ~~~vle~~~p~~~~----~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eS------i---------~~~p~~~~l~~~ 211 (238)
T COG2226 151 RLLVLEFSKPDNPV----LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAES------I---------RRFPDQEELKQM 211 (238)
T ss_pred EEEEEEcCCCCchh----hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHH------H---------HhCCCHHHHHHH
Confidence 55443333333332 333333 3333 4444444443233332 22222 1 223334455554
Q ss_pred HHHHHhCCCcccc
Q 004514 687 QVRNLRAGFVQLP 699 (747)
Q Consensus 687 q~R~~rAGF~~lp 699 (747)
+..+||..+.
T Consensus 212 ---~~~~gf~~i~ 221 (238)
T COG2226 212 ---IEKAGFEEVR 221 (238)
T ss_pred ---HHhcCceEEe
Confidence 7778987654
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=86.43 E-value=17 Score=40.17 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=54.9
Q ss_pred eeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCC--cEEEEEeccccc
Q 004514 481 RLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNV--PFEYNAIAKRWD 558 (747)
Q Consensus 481 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gV--pFeF~~Ia~~~E 558 (747)
...|+|+|.+.|. +...|+.+ | .++||||.. .+.++...++ ++.-++ ..+|.. ...+
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s------~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae 190 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAV------DKNVKIARLH----ADMDPVTSTIEYLC--TTAE 190 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCC------HHHHHHHHHH----HHhcCcccceeEEe--cCHH
Confidence 3579999999996 45567643 3 489999963 2334433322 222121 233332 2223
Q ss_pred ccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEE-EEEee
Q 004514 559 TIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMF-IHGIT 615 (747)
Q Consensus 559 ~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vf-v~~e~ 615 (747)
++ ....+.+=+|-|..-|+|+.|. ..+|+.| +-|+|.-. ++...
T Consensus 191 ~l-----~~~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 191 KL-----ADEGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred Hh-----hhccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEEEEC
Confidence 32 2222334455666678888752 3566666 45799744 34433
No 17
>PRK08317 hypothetical protein; Provisional
Probab=86.42 E-value=38 Score=33.87 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=27.9
Q ss_pred HHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 472 IMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 472 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
+++.+.-...-+|+|+|.+.|. |.. .++.+- +|.-++|||+..
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~ 53 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRS 53 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCC
Confidence 4555554556689999999884 333 344332 245699999963
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=85.33 E-value=6.6 Score=40.86 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=30.9
Q ss_pred hHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 469 NKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 469 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
+..|++.+.-.+.-+|+|+|.+.| .+...|+.+. |..+++|||..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s 64 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSS 64 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECC
Confidence 455666665455678999999999 3344566552 34699999963
No 19
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=84.46 E-value=3.7 Score=36.50 Aligned_cols=97 Identities=21% Similarity=0.326 Sum_probs=51.3
Q ss_pred EEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCcc
Q 004514 484 IIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLE 563 (747)
Q Consensus 484 IIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~e 563 (747)
|+|+|-+.|..=-.|.+.+ . . | |..++||||.. .+.++.+.++..+ .+++.+|.. ..+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~-~-~-~~~~~~gvD~s------~~~l~~~~~~~~~----~~~~~~~~~--~D~~~---- 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D-A-G-PSSRVIGVDIS------PEMLELAKKRFSE----DGPKVRFVQ--ADARD---- 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-------HHHHHHHHHHSHH----TTTTSEEEE--SCTTC----
T ss_pred CEEeecCCcHHHHHHHHHh-h-h-c-ccceEEEEECC------HHHHHHHHHhchh----cCCceEEEE--CCHhH----
Confidence 7999999996666666665 2 1 2 56999999973 4455555444433 456666632 23322
Q ss_pred cccccCCcEEEEEe-cccccccccccccccchHHHHHHHHHh-hCC
Q 004514 564 ELKIDRDEVLVVNC-LYRAKNLLDETIAVDSSRNIFLNFIRK-INP 607 (747)
Q Consensus 564 dL~i~~dE~LaVNc-~~~Lh~L~desv~~~spRd~vL~~Ir~-L~P 607 (747)
+....+.+=+|-| ...++|+.++ -+..+|+.+.+ ++|
T Consensus 61 -l~~~~~~~D~v~~~~~~~~~~~~~------~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 61 -LPFSDGKFDLVVCSGLSLHHLSPE------ELEALLRRIARLLRP 99 (101)
T ss_dssp -HHHHSSSEEEEEE-TTGGGGSSHH------HHHHHHHHHHHTEEE
T ss_pred -CcccCCCeeEEEEcCCccCCCCHH------HHHHHHHHHHHHhCC
Confidence 3333334444445 3447887543 23556666543 444
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=84.41 E-value=41 Score=35.77 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=31.3
Q ss_pred HhHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecC
Q 004514 466 FTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEF 519 (747)
Q Consensus 466 f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 519 (747)
+-+.+.|++.+.-....+|+|+|-+.|.- ...|+.+.+ .++|||+.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~----a~~la~~~~----~~v~giD~ 83 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGG----CKYINEKYG----AHVHGVDI 83 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChh----hHHHHhhcC----CEEEEEEC
Confidence 34456667776556667899999999963 234454332 58999996
No 21
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=84.38 E-value=29 Score=38.36 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=57.9
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHH-hc-CCcEEEEEecccc
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAK-DF-NVPFEYNAIAKRW 557 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~-~~-gVpFeF~~Ia~~~ 557 (747)
+...|+|+|-|.|. +...|+.+ | .+|||||.. ...++...++..+.-. .. +...+|... .+
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S------~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDIS------AAMVAEAERRAKEALAALPPEVLPKFEAN--DL 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHHHHHHHHHhcccccccccceEEEEc--ch
Confidence 45689999999885 44556654 3 489999964 3456655555432210 01 223444332 22
Q ss_pred cccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEEE
Q 004514 558 DTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHG 613 (747)
Q Consensus 558 E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~~ 613 (747)
++ +. +.+=+|-|..-|+|+.++ ....+++.++++.|..+++.
T Consensus 207 ~~-----l~---~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 ES-----LS---GKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hh-----cC---CCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 22 21 111133355667787653 23467888888888777664
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=83.25 E-value=4.7 Score=34.15 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=52.7
Q ss_pred EecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCccc
Q 004514 485 IDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEE 564 (747)
Q Consensus 485 IDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~ed 564 (747)
+|+|.+.|.....|.+. +-.++||||.. .+.++.+. +..+..++.|. ..+.++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~------~~~~~~~~----~~~~~~~~~~~---------~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS------EEMLEQAR----KRLKNEGVSFR---------QGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-------HHHHHHHH----HHTTTSTEEEE---------ESBTTS
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC------HHHHHHHH----hcccccCchhe---------eehHHh
Confidence 58899988766666554 44899999963 23333333 33333444411 223445
Q ss_pred ccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEE
Q 004514 565 LKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFI 611 (747)
Q Consensus 565 L~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv 611 (747)
+.+.++-+=+|-|...++|+. .+...+-+..|-|+|.-+.
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~-------~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE-------DPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS-------HHHHHHHHHHHHEEEEEEE
T ss_pred Cccccccccccccccceeecc-------CHHHHHHHHHHHcCcCeEE
Confidence 556667676777888888882 2334444455778887543
No 23
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=81.02 E-value=11 Score=40.62 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred hhhHhHhHHHHhhhcc----CceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHH
Q 004514 463 LSNFTANKTIMSLAQN----SMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLA 538 (747)
Q Consensus 463 fa~f~ANqaILeA~~g----~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~ 538 (747)
-+++.+-..||+.++. -.--+|+|||-|-|. .+.-+...- +-..++|.|+.. ..+.+.|++|.
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGt---a~wAa~~~~---~~~~~~~~vd~s-------~~~~~l~~~l~ 78 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGT---ALWAAREVW---PSLKEYTCVDRS-------PEMLELAKRLL 78 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHH---HHHHHHHHh---cCceeeeeecCC-------HHHHHHHHHHH
Confidence 3556677777777653 345589999999873 332222221 134789999853 34667888876
Q ss_pred HHHHhcCCcEEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEEEEeecC
Q 004514 539 DYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIHGITNG 617 (747)
Q Consensus 539 ~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv~~e~n~ 617 (747)
+-...... .+.. ..+..+.+.+.+...|++ .|.|..|.+ ..|..+++.+ .++++ ++|++ ..|
T Consensus 79 ~~~~~~~~-~~~~------~~~~~~~~~~~~~DLvi~--s~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlV-EpG 141 (274)
T PF09243_consen 79 RAGPNNRN-AEWR------RVLYRDFLPFPPDDLVIA--SYVLNELPS------AARAELVRSLWNKTAP-VLVLV-EPG 141 (274)
T ss_pred hccccccc-chhh------hhhhcccccCCCCcEEEE--ehhhhcCCc------hHHHHHHHHHHHhccC-cEEEE-cCC
Confidence 54322110 0010 111122233333333322 233444443 2466777777 66677 44433 445
Q ss_pred CCCCCchHHHHHHHH
Q 004514 618 AYNAPFFVTRFREAL 632 (747)
Q Consensus 618 ~~nsp~F~~RF~EAL 632 (747)
+...-..+.+.|+.|
T Consensus 142 t~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 142 TPAGFRRIAEARDQL 156 (274)
T ss_pred ChHHHHHHHHHHHHH
Confidence 555555777777777
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=80.05 E-value=14 Score=37.26 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=61.1
Q ss_pred hHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 004514 467 TANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNV 546 (747)
Q Consensus 467 ~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gV 546 (747)
.+...|++++.-...-+|+|+|-|.|.-- ..||.+ | .++||||.. ...++.+ .+.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a----~~la~~-g----~~V~~iD~s------~~~l~~a----~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNS----LYLSLA-G----YDVRAWDHN------PASIASV----LDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHH----HHHHHC-C----CeEEEEECC------HHHHHHH----HHHHHHhCC
Confidence 45567777776555579999999999633 334444 3 489999963 2333333 334455577
Q ss_pred cEEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEE
Q 004514 547 PFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMF 610 (747)
Q Consensus 547 pFeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vf 610 (747)
+..+... .+.... +. ..=++++.+. -||++.++ .+..+++.+ |.|+|.-.
T Consensus 78 ~v~~~~~--d~~~~~---~~-~~fD~I~~~~--~~~~~~~~------~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAY--DINAAA---LN-EDYDFIFSTV--VFMFLQAG------RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEec--cchhcc---cc-CCCCEEEEec--ccccCCHH------HHHHHHHHHHHHhCCCcE
Confidence 6444322 121111 11 1123444333 35666432 345666665 56899854
No 25
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=79.44 E-value=3.5 Score=43.99 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=34.4
Q ss_pred cCceeEEEecccccccccHHHHHHHhcCC--CCCCeEEEeEecCCCCCCCChHHHHHHHH
Q 004514 478 NSMRLHIIDFGILYGFQWPTFIQRISMRP--GGPPKLRITGIEFPQPGFRPAERVEETGR 535 (747)
Q Consensus 478 g~~~VHIIDfgI~~G~QWP~Liq~LA~R~--gGPP~LRITgI~~p~~gfrp~e~leetG~ 535 (747)
..+.++|.|.|-+.|--+-+|--.|+..- ...+..+|+|+|.. .+.|+.+.+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis------~~~L~~Ar~ 150 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID------LKALEKARA 150 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC------HHHHHHHHc
Confidence 34569999999999976655555555431 12347999999974 344555544
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=79.43 E-value=61 Score=32.97 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=36.8
Q ss_pred hHhHhHHHHhhhc--cCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHH
Q 004514 465 NFTANKTIMSLAQ--NSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRL 537 (747)
Q Consensus 465 ~f~ANqaILeA~~--g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL 537 (747)
+-.....+++.+. ..+.-+|+|+|-+.|. +...|+.+ + .+|||||.. .+.++...+++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~s------~~~i~~a~~~~ 97 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDIS------EQMVQMARNRA 97 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEECC------HHHHHHHHHHH
Confidence 4444556666665 2456799999999984 55566654 1 389999963 34454444444
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=78.78 E-value=10 Score=33.69 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=55.1
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCc
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQL 562 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~ 562 (747)
+|+|+|-+.|. +...|+++ -|..|||||+.. .+.++.+.+++.+....-+|. |.. ..+ .
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~---~~~~~v~gvD~s------~~~~~~a~~~~~~~~~~~~i~--~~~--~d~----~ 62 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARL---FPGARVVGVDIS------PEMLEIARERAAEEGLSDRIT--FVQ--GDA----E 62 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHH---HTTSEEEEEESS------HHHHHHHHHHHHHTTTTTTEE--EEE--SCC----H
T ss_pred EEEEEcCcCCH----HHHHHHhc---CCCCEEEEEeCC------HHHHHHHHHHHHhcCCCCCeE--EEE--Ccc----c
Confidence 68999999983 33444442 134789999963 456777766664433333343 322 112 0
Q ss_pred ccccc-cCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEEE
Q 004514 563 EELKI-DRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIH 612 (747)
Q Consensus 563 edL~i-~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv~ 612 (747)
..... .+=++++.+. +.++++++. .-+..+|+.+ +.|+|.-.++
T Consensus 63 ~~~~~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 63 FDPDFLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp GGTTTSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEE
T ss_pred cCcccCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEE
Confidence 11111 1123455544 456666542 1245666666 5789985544
No 28
>PRK05785 hypothetical protein; Provisional
Probab=76.83 E-value=72 Score=33.19 Aligned_cols=92 Identities=7% Similarity=-0.008 Sum_probs=51.7
Q ss_pred eeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeccccccc
Q 004514 481 RLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTI 560 (747)
Q Consensus 481 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l 560 (747)
.-.|+|+|.+.|-- ...|+.+.+ .+|||||.. .+.++....+ .++ +....+
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S------~~Ml~~a~~~---------~~~----~~~d~~-- 102 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA------ENMLKMNLVA---------DDK----VVGSFE-- 102 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC------HHHHHHHHhc---------cce----EEechh--
Confidence 45799999999943 344554432 489999963 2334332211 111 222223
Q ss_pred CcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEEE
Q 004514 561 QLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIH 612 (747)
Q Consensus 561 ~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv~ 612 (747)
++....+.+=+|-|.+.|||+.| + +.+|+.+ |-++|.++++
T Consensus 103 ---~lp~~d~sfD~v~~~~~l~~~~d-------~-~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 103 ---ALPFRDKSFDVVMSSFALHASDN-------I-EKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred ---hCCCCCCCEEEEEecChhhccCC-------H-HHHHHHHHHHhcCceEEE
Confidence 33344455556666778888754 2 4556555 6689965444
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=76.39 E-value=88 Score=31.35 Aligned_cols=34 Identities=15% Similarity=0.392 Sum_probs=23.3
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
+..+|+|+|-+.|. +...|+.+ + |..++|||+..
T Consensus 34 ~~~~vLDlG~G~G~----~~~~l~~~--~-~~~~~~~~D~~ 67 (240)
T TIGR02072 34 IPASVLDIGCGTGY----LTRALLKR--F-PQAEFIALDIS 67 (240)
T ss_pred CCCeEEEECCCccH----HHHHHHHh--C-CCCcEEEEeCh
Confidence 34789999999995 33344433 2 45789999963
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=76.32 E-value=6.9 Score=41.80 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=66.5
Q ss_pred CceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeccccc
Q 004514 479 SMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWD 558 (747)
Q Consensus 479 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E 558 (747)
-..+-|+|+|-+-| .|-+.||+. | ..+||||... +.|+.+ ...|.+-||-.+|...
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se------~~I~~A----k~ha~e~gv~i~y~~~----- 113 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASE------KPIEVA----KLHALESGVNIDYRQA----- 113 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCCh------HHHHHH----HHhhhhccccccchhh-----
Confidence 35677999999988 788888854 3 8999999632 223332 2345566777666554
Q ss_pred ccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEE
Q 004514 559 TIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMF 610 (747)
Q Consensus 559 ~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vf 610 (747)
..++|.-..+-.=||-||=-|+|+.| |..-+....+.++|.-.
T Consensus 114 --~~edl~~~~~~FDvV~cmEVlEHv~d-------p~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 114 --TVEDLASAGGQFDVVTCMEVLEHVPD-------PESFLRACAKLVKPGGI 156 (243)
T ss_pred --hHHHHHhcCCCccEEEEhhHHHccCC-------HHHHHHHHHHHcCCCcE
Confidence 34555443355668899999999976 45555556678999743
No 31
>PLN02244 tocopherol O-methyltransferase
Probab=75.65 E-value=27 Score=38.54 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=54.9
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc--EEEEEecccc
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP--FEYNAIAKRW 557 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp--FeF~~Ia~~~ 557 (747)
..-+|+|+|-+.|. +...|+.+.| .++|||+.. ...++.. .+.++..|+. .+|.. ...
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s------~~~i~~a----~~~~~~~g~~~~v~~~~--~D~ 177 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS------PVQAARA----NALAAAQGLSDKVSFQV--ADA 177 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHH----HHHHHhcCCCCceEEEE--cCc
Confidence 34579999999984 5556676543 489999963 2223332 2334444542 44432 222
Q ss_pred cccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcE
Q 004514 558 DTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHM 609 (747)
Q Consensus 558 E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~V 609 (747)
++ +....+.+=+|-|...++|+.| +...+-...|-|+|.-
T Consensus 178 ~~-----~~~~~~~FD~V~s~~~~~h~~d-------~~~~l~e~~rvLkpGG 217 (340)
T PLN02244 178 LN-----QPFEDGQFDLVWSMESGEHMPD-------KRKFVQELARVAAPGG 217 (340)
T ss_pred cc-----CCCCCCCccEEEECCchhccCC-------HHHHHHHHHHHcCCCc
Confidence 22 2223344445566677888865 2233334557799974
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=73.33 E-value=48 Score=34.73 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=59.5
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF 550 (747)
.|++.+. .+.-+|+|+|-+.|. +...|+.+ | .++||||.. .+.++.+.+++ +..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s------~~~l~~a~~~~----~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLS------AEMIQRAKQAA----EAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECC------HHHHHHHHHHH----HhcCCccce
Confidence 4566654 344699999999993 45566665 2 489999963 34455554443 344543222
Q ss_pred EEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEE
Q 004514 551 NAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFI 611 (747)
Q Consensus 551 ~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv 611 (747)
..+....+++.. ..++.+=+|-|..-|+|+. .|...+-...+-|+|.-.+
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~-------~~~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVA-------DPKSVLQTLWSVLRPGGAL 145 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhC-------CHHHHHHHHHHHcCCCeEE
Confidence 222223333211 1112222333555567764 3444455556779998554
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=72.54 E-value=38 Score=34.25 Aligned_cols=109 Identities=9% Similarity=0.108 Sum_probs=57.2
Q ss_pred hHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-
Q 004514 469 NKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP- 547 (747)
Q Consensus 469 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp- 547 (747)
.+.+++.+.....-+|+|+|-+.|. +...||++ | .+|||||.. .+.++...+ + ++..++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S------~~~i~~a~~-~---~~~~~~~~ 79 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKN------PMSIANLER-I---KAAENLDN 79 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCC------HHHHHHHHH-H---HHHcCCCc
Confidence 4455555544445689999999996 34456655 2 489999963 233444332 2 3334554
Q ss_pred EEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEE
Q 004514 548 FEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMF 610 (747)
Q Consensus 548 FeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vf 610 (747)
.++ +...++++.. . ..=.+|+.+ +.+|++.++ .+..+++.| +.|+|.-.
T Consensus 80 v~~--~~~d~~~~~~---~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 80 LHT--AVVDLNNLTF---D-GEYDFILST--VVLMFLEAK------TIPGLIANMQRCTKPGGY 129 (197)
T ss_pred ceE--EecChhhCCc---C-CCcCEEEEe--cchhhCCHH------HHHHHHHHHHHHcCCCcE
Confidence 232 2223332221 1 111344433 345666432 245666655 66899864
No 34
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=71.20 E-value=50 Score=35.85 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=65.0
Q ss_pred eEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccc-c
Q 004514 482 LHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDT-I 560 (747)
Q Consensus 482 VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~-l 560 (747)
.+|||+|-|.|.-=..|+++|.. ..++||||.. .+.|+.+.++|..- .-+++++ .|.....+ +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS------~~mL~~a~~~l~~~--~p~~~v~--~i~gD~~~~~ 128 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDIS------ADALKESAAALAAD--YPQLEVH--GICADFTQPL 128 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECC------HHHHHHHHHHHHhh--CCCceEE--EEEEcccchh
Confidence 57999999999666667777643 4789999974 56688888887641 1234443 34332221 1
Q ss_pred CcccccccCCcEEEEEecccccccccccccccchHHHHHHHHH-hhCCc-EEEEE
Q 004514 561 QLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIR-KINPH-MFIHG 613 (747)
Q Consensus 561 ~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir-~L~P~-Vfv~~ 613 (747)
.... ....+..+++.+-..++|+..+. ...+|+.|+ .|+|. +|+++
T Consensus 129 ~~~~-~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 129 ALPP-EPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhhc-ccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEEe
Confidence 1000 01112466666666677775431 346777774 58996 55554
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=70.66 E-value=32 Score=37.11 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=57.3
Q ss_pred HHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 004514 470 KTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFE 549 (747)
Q Consensus 470 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFe 549 (747)
..|++.+.=+.-=||+|+|.+ |=.+...+|++.| +++|||.+. .+..+. ..+.++..|++=.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS------~~Q~~~----a~~~~~~~gl~~~ 113 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS------EEQAEY----ARERIREAGLEDR 113 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-------HHHHHH----HHHHHHCSTSSST
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC------HHHHHH----HHHHHHhcCCCCc
Confidence 345666544455589999866 5688888998863 799999863 233333 4445567787622
Q ss_pred EEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcE
Q 004514 550 YNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHM 609 (747)
Q Consensus 550 F~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~V 609 (747)
-..+...+.++.. .=|-++.| -.+.|+..+ -...+++.| +-|+|.-
T Consensus 114 v~v~~~D~~~~~~-----~fD~IvSi---~~~Ehvg~~------~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 114 VEVRLQDYRDLPG-----KFDRIVSI---EMFEHVGRK------NYPAFFRKISRLLKPGG 160 (273)
T ss_dssp EEEEES-GGG--------S-SEEEEE---SEGGGTCGG------GHHHHHHHHHHHSETTE
T ss_pred eEEEEeeccccCC-----CCCEEEEE---echhhcChh------HHHHHHHHHHHhcCCCc
Confidence 2222233333322 22323333 345666432 246788888 5699974
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=69.38 E-value=1.5e+02 Score=31.10 Aligned_cols=97 Identities=19% Similarity=0.373 Sum_probs=49.8
Q ss_pred eEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeccccccc
Q 004514 482 LHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRWDTI 560 (747)
Q Consensus 482 VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-FeF~~Ia~~~E~l 560 (747)
=+|+|+|.+.|.- ..+ ++... | +.-+||||+.. .+.++.+.++ ++.++++ .+| +...++++
T Consensus 79 ~~VLDiG~G~G~~-~~~---~a~~~-g-~~~~v~gvD~s------~~~l~~A~~~----~~~~g~~~v~~--~~~d~~~l 140 (272)
T PRK11873 79 ETVLDLGSGGGFD-CFL---AARRV-G-PTGKVIGVDMT------PEMLAKARAN----ARKAGYTNVEF--RLGEIEAL 140 (272)
T ss_pred CEEEEeCCCCCHH-HHH---HHHHh-C-CCCEEEEECCC------HHHHHHHHHH----HHHcCCCCEEE--EEcchhhC
Confidence 3899999998842 221 22221 1 34589999963 3445444443 2344543 233 22233333
Q ss_pred CcccccccCC--cEEEEEecccccccccccccccchHHHHHHHHHhhCCcEE
Q 004514 561 QLEELKIDRD--EVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMF 610 (747)
Q Consensus 561 ~~edL~i~~d--E~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vf 610 (747)
. +..+ .+|+.||.+ |++.| +...+=...|-|+|.-.
T Consensus 141 ~-----~~~~~fD~Vi~~~v~--~~~~d-------~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 141 P-----VADNSVDVIISNCVI--NLSPD-------KERVFKEAFRVLKPGGR 178 (272)
T ss_pred C-----CCCCceeEEEEcCcc--cCCCC-------HHHHHHHHHHHcCCCcE
Confidence 2 2222 356667654 45443 23444455677999843
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=68.96 E-value=38 Score=36.36 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=52.5
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCc
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQL 562 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~ 562 (747)
+|+|+|-|.|. +...||.+ | .++||||.. ...++ .+.+.|+..++.+++... .+++..
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s------~~ai~----~~~~~~~~~~l~v~~~~~--D~~~~~- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDIN------QQSLE----NLQEIAEKENLNIRTGLY--DINSAS- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHH----HHHHHHHHcCCceEEEEe--chhccc-
Confidence 79999999996 34455654 2 589999963 23333 344556666776555332 222211
Q ss_pred ccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEE
Q 004514 563 EELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMF 610 (747)
Q Consensus 563 edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vf 610 (747)
+. ..=.+++.++ -||++.++ .+..+|+.+ +.|+|.-.
T Consensus 181 --~~-~~fD~I~~~~--vl~~l~~~------~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 181 --IQ-EEYDFILSTV--VLMFLNRE------RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred --cc-CCccEEEEcc--hhhhCCHH------HHHHHHHHHHHhcCCCcE
Confidence 11 1113444443 45666432 234566655 56899754
No 38
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=68.74 E-value=1.4e+02 Score=30.43 Aligned_cols=101 Identities=17% Similarity=0.308 Sum_probs=50.9
Q ss_pred cCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccc
Q 004514 478 NSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRW 557 (747)
Q Consensus 478 g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~ 557 (747)
.....+|+|+|.+.|. +...|+.+ + .++|+|+.. ...++.+.+++. ..++..+|... .+
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~--~~ 104 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS------EENIEVARLHAL----ESGLKIDYRQT--TA 104 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC------HHHHHHHHHHHH----HcCCceEEEec--CH
Confidence 3456789999999875 33344543 2 469999863 333554444432 23444455432 22
Q ss_pred cccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEE
Q 004514 558 DTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFI 611 (747)
Q Consensus 558 E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv 611 (747)
+.+... ..+-+=+|-|..-++|+.+ +. .+|+.+ +-|+|.-.+
T Consensus 105 ~~~~~~----~~~~fD~Ii~~~~l~~~~~-------~~-~~l~~~~~~L~~gG~l 147 (233)
T PRK05134 105 EELAAE----HPGQFDVVTCMEMLEHVPD-------PA-SFVRACAKLVKPGGLV 147 (233)
T ss_pred HHhhhh----cCCCccEEEEhhHhhccCC-------HH-HHHHHHHHHcCCCcEE
Confidence 222100 1121223334444566543 33 455544 668897443
No 39
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=68.42 E-value=44 Score=37.20 Aligned_cols=119 Identities=19% Similarity=0.298 Sum_probs=65.8
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhc---CCcEEEEEe--c
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDF---NVPFEYNAI--A 554 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~---gVpFeF~~I--a 554 (747)
...+|+|+|.|.|. .|.+....+ -=++.|||+. .+.|+++.+|..+.-+.. ...+.|.+. .
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~-----i~~~vg~Dis------~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAK-----IKHYVGIDIS------EESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-------HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCch---hHHHHHhcC-----CCEEEEEeCC------HHHHHHHHHHHHHhccccccccccccchhheec
Confidence 77999999999883 444444433 2467888863 678999999986655332 122333322 2
Q ss_pred c--cccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCc-EEEEEeecC
Q 004514 555 K--RWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPH-MFIHGITNG 617 (747)
Q Consensus 555 ~--~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~-Vfv~~e~n~ 617 (747)
. -++.|. +.+.-....+=+|+|+|.||+...-. ... ..+|++| +.|+|. +||-+.+++
T Consensus 128 ~D~f~~~l~-~~~~~~~~~FDvVScQFalHY~Fese---~~a-r~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 128 ADCFSESLR-EKLPPRSRKFDVVSCQFALHYAFESE---EKA-RQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTCCSHHH-CTSSSTTS-EEEEEEES-GGGGGSSH---HHH-HHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccccchhh-hhccccCCCcceeehHHHHHHhcCCH---HHH-HHHHHHHHHhcCCCCEEEEEecCH
Confidence 1 111110 11222235788999999999997421 122 3455555 679997 455555554
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=64.08 E-value=1.5e+02 Score=30.64 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=28.8
Q ss_pred hHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 469 NKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 469 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
-..+++.+.....-+|+|+|.+.|. +.+.|+.+ + -++||||..
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 3444555554444579999999993 55666654 2 489999963
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=63.78 E-value=1e+02 Score=33.94 Aligned_cols=113 Identities=13% Similarity=0.216 Sum_probs=65.5
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF 550 (747)
.|++-+.=+.--||.|+|-| |=.|+...|++-| +++|||++. .+..+...+| ++..|++=.-
T Consensus 63 ~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS------~~Q~~~~~~r----~~~~gl~~~v 124 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS------EEQLAYAEKR----IAARGLEDNV 124 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC------HHHHHHHHHH----HHHcCCCccc
Confidence 34444443566789998755 6689999998864 899999974 3334444333 4445665223
Q ss_pred EEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHh-hCCc--EEEEEee
Q 004514 551 NAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRK-INPH--MFIHGIT 615 (747)
Q Consensus 551 ~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~-L~P~--Vfv~~e~ 615 (747)
+.+.+.|.++... +=.|-++=.+.|+..+. -+.+++.+++ |+|+ ++.|++.
T Consensus 125 ~v~l~d~rd~~e~--------fDrIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 125 EVRLQDYRDFEEP--------FDRIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred EEEeccccccccc--------cceeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEEEEec
Confidence 3333445444322 22233444566776442 3678888865 7776 3445554
No 42
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=59.08 E-value=29 Score=35.89 Aligned_cols=43 Identities=23% Similarity=0.286 Sum_probs=26.9
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
.++++..=...-+|||+|-+.| .+..+|+++. |.||+|..|+|
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp 133 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLP 133 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-H
T ss_pred hhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccH
Confidence 3444443334458999999999 3344444442 68999999986
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=58.99 E-value=1.2e+02 Score=34.67 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=58.6
Q ss_pred HHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 004514 470 KTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFE 549 (747)
Q Consensus 470 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFe 549 (747)
..|++.+.....-+|+|+|-+.|. +...|+.+ + -++|||+.. .+.++.. +.+. . ..-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~----~~~~la~~-~----~~v~giD~s------~~~l~~a-~~~~---~-~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGR----FTGELAKK-A----GQVIALDFI------ESVIKKN-ESIN---G-HYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCH----HHHHHHhh-C----CEEEEEeCC------HHHHHHH-HHHh---c-cCCceE
Confidence 355566554444489999999994 34445544 2 178999963 2334332 2111 1 111223
Q ss_pred EEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEEEE
Q 004514 550 YNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIHG 613 (747)
Q Consensus 550 F~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv~~ 613 (747)
|... ..++ .++....+.+=+|-|.+.|||+.++. ...+|..+ |-|+|.-.++.
T Consensus 87 ~~~~--d~~~---~~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 87 FMCA--DVTS---PDLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEe--cccc---cccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEE
Confidence 3221 1111 11223334344555666788987642 34666655 55899866543
No 44
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=58.26 E-value=1.3e+02 Score=30.19 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=48.9
Q ss_pred eeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEecccccc
Q 004514 481 RLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRWDT 559 (747)
Q Consensus 481 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-FeF~~Ia~~~E~ 559 (747)
.-+|+|+|-|.|. +...+ |.+ .|..++||||.. .+.++.+ .+.+++.|++ ++| +...+++
T Consensus 43 ~~~vLDiGcGtG~-~s~~l---a~~---~~~~~V~~iD~s------~~~~~~a----~~~~~~~~~~~i~~--i~~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGF-PGIPL---AIA---RPELKLTLLESN------HKKVAFL----REVKAELGLNNVEI--VNGRAED 103 (181)
T ss_pred CCeEEEecCCCCc-cHHHH---HHH---CCCCeEEEEeCc------HHHHHHH----HHHHHHhCCCCeEE--Eecchhh
Confidence 3489999999993 12222 221 134689999963 2333333 3344556664 444 3334444
Q ss_pred cCcccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEEEE
Q 004514 560 IQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIHG 613 (747)
Q Consensus 560 l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv~~ 613 (747)
+.. -.+=++++.|+ ++++ ..++..+ +-|+|.-.++.
T Consensus 104 ~~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 104 FQH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred ccc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEE
Confidence 321 11223666655 3333 2344444 44889865543
No 45
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=56.81 E-value=1.2e+02 Score=30.32 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecC
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEF 519 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 519 (747)
.|.+.+... -+|+|+|-+.|. ++..|+.+. ..+++||+.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~----~~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEK----QVRGYGIEI 44 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhcc----CCcEEEEeC
Confidence 344444322 379999999994 566776553 236799985
No 46
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=56.77 E-value=1e+02 Score=35.44 Aligned_cols=154 Identities=20% Similarity=0.245 Sum_probs=86.5
Q ss_pred HhHhHHHHhhhccCceeEEEecccccc-cccHHHHHHHh--------cCCCCCCeEEEeEecCCCCCCCChHHHHHHHHH
Q 004514 466 FTANKTIMSLAQNSMRLHIIDFGILYG-FQWPTFIQRIS--------MRPGGPPKLRITGIEFPQPGFRPAERVEETGRR 536 (747)
Q Consensus 466 f~ANqaILeA~~g~~~VHIIDfgI~~G-~QWP~Liq~LA--------~R~gGPP~LRITgI~~p~~gfrp~e~leetG~R 536 (747)
+.||... +.-.+|-|||.|+++- .-=|..|- |+ -+...|++...-|.-.|+. .+...+.- -.|
T Consensus 92 ~LaN~~l----~rG~~v~iiDaDvGQ~ei~pPg~IS-L~~~~s~~~~L~~l~~~~~~FvG~isP~~--~~~~~i~~-v~r 163 (398)
T COG1341 92 YLANKLL----ARGRKVAIIDADVGQSEIGPPGFIS-LAFPESPVISLSELEPFTLYFVGSISPQG--FPGRYIAG-VAR 163 (398)
T ss_pred HHHHHHh----hcCceEEEEeCCCCCcccCCCceEE-eecccCCCCCHHHcCccceEEEeccCCCC--ChHHHHHH-HHH
Confidence 4555543 3344699999998863 22222221 11 1123467777777777765 23343433 477
Q ss_pred HHHHHHhcCCcEEEEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEEEeec
Q 004514 537 LADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITN 616 (747)
Q Consensus 537 L~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n 616 (747)
|.++|++. -++++||+.-..+=. ...+--...|+..+|++++..+.+
T Consensus 164 L~~~a~~~-------------------------~~~ilIdT~GWi~G~--------~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 164 LVDLAKKE-------------------------ADFILIDTDGWIKGW--------GGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred HHHHhhcc-------------------------CCEEEEcCCCceeCc--------hHHHHHHHHHhhcCCCEEEEeccc
Confidence 88888754 135577765332211 245566778899999998866554
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhHHhhhhCCCCCHHHHHHHHHHHHHHHhH
Q 004514 617 GAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALN 667 (747)
Q Consensus 617 ~~~nsp~F~~RF~EAL~hYsAlFDsLda~~pr~~~eR~~iEr~~~greI~N 667 (747)
. ...++-+=.+...| ....|+..++.-.||...=.+-+.|.+.+
T Consensus 211 ~---~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 211 N---ELSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred c---ccchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 2 22223333344433 33445566676677765544456666655
No 47
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=56.47 E-value=1.6e+02 Score=32.98 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=22.5
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecC
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEF 519 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 519 (747)
...+|+|+|.+.|.-.. .|+++.++ .++|+||.
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~ 145 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQ 145 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEEC
Confidence 45689999999996333 34433222 58999996
No 48
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=55.98 E-value=3.2e+02 Score=30.18 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhhcCccchhhHhH-------------hHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCC
Q 004514 442 TSAADILKAYQLYLAACPFRKLSNFTA-------------NKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGG 508 (747)
Q Consensus 442 ~s~~~~lkAy~~f~~~~Pf~kfa~f~A-------------NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gG 508 (747)
.+..+...-|..+....||.|-.+-.- -+.|+..+..-+.-+|+|+|-+.|. +...++.+ |
T Consensus 71 ~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g 144 (322)
T PRK15068 71 LSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--G 144 (322)
T ss_pred CCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--C
Confidence 344444455566666677765544331 1233334432223479999999984 23345544 3
Q ss_pred CCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCcccccccCCcEEEEEeccccccccccc
Q 004514 509 PPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDET 588 (747)
Q Consensus 509 PP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~des 588 (747)
+- +++|||+. ...+... +...+++.. ....+|.. ..++++. . ++-+=+|-|+..|+|+.
T Consensus 145 ~~--~V~GiD~S------~~~l~q~-~a~~~~~~~-~~~i~~~~--~d~e~lp-----~-~~~FD~V~s~~vl~H~~--- 203 (322)
T PRK15068 145 AK--LVVGIDPS------QLFLCQF-EAVRKLLGN-DQRAHLLP--LGIEQLP-----A-LKAFDTVFSMGVLYHRR--- 203 (322)
T ss_pred CC--EEEEEcCC------HHHHHHH-HHHHHhcCC-CCCeEEEe--CCHHHCC-----C-cCCcCEEEECChhhccC---
Confidence 32 59999942 1112111 111222211 22344433 2333332 2 12222333455567763
Q ss_pred ccccchHHHHHHHHHhhCCcEEE
Q 004514 589 IAVDSSRNIFLNFIRKINPHMFI 611 (747)
Q Consensus 589 v~~~spRd~vL~~Ir~L~P~Vfv 611 (747)
+|.+.+-+.-+.|+|.-.+
T Consensus 204 ----dp~~~L~~l~~~LkpGG~l 222 (322)
T PRK15068 204 ----SPLDHLKQLKDQLVPGGEL 222 (322)
T ss_pred ----CHHHHHHHHHHhcCCCcEE
Confidence 4666666666789998433
No 49
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=53.19 E-value=2.1e+02 Score=30.72 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=68.4
Q ss_pred hhhccCceeEEEecccccccccHHHHHHHhcCCCCC--CeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 004514 474 SLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGP--PKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYN 551 (747)
Q Consensus 474 eA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGP--P~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~ 551 (747)
.-+....++-+...|++-|--.+- -| |-.|||.||+ .+.+++..+.= +|+. .|.+|-
T Consensus 70 ~~~gk~~K~~vLEvgcGtG~Nfkf----------y~~~p~~svt~lDp-------n~~mee~~~ks--~~E~--k~~~~~ 128 (252)
T KOG4300|consen 70 YFLGKSGKGDVLEVGCGTGANFKF----------YPWKPINSVTCLDP-------NEKMEEIADKS--AAEK--KPLQVE 128 (252)
T ss_pred HHhcccCccceEEecccCCCCccc----------ccCCCCceEEEeCC-------cHHHHHHHHHH--Hhhc--cCcceE
Confidence 444556789999999998732211 13 7799999984 55677765433 3333 454444
Q ss_pred -EecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHh-hCCcEEEEEeecCCCCCCchHHHHH
Q 004514 552 -AIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRK-INPHMFIHGITNGAYNAPFFVTRFR 629 (747)
Q Consensus 552 -~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~-L~P~Vfv~~e~n~~~nsp~F~~RF~ 629 (747)
-|....|++. ++..+-+=+|-|.|-|-.. .+|+ ..|+.+|+ |+|+-.++-+..+.--- .|..|+.
T Consensus 129 ~fvva~ge~l~----~l~d~s~DtVV~TlvLCSv-------e~~~-k~L~e~~rlLRpgG~iifiEHva~~y-~~~n~i~ 195 (252)
T KOG4300|consen 129 RFVVADGENLP----QLADGSYDTVVCTLVLCSV-------EDPV-KQLNEVRRLLRPGGRIIFIEHVAGEY-GFWNRIL 195 (252)
T ss_pred EEEeechhcCc----ccccCCeeeEEEEEEEecc-------CCHH-HHHHHHHHhcCCCcEEEEEecccccc-hHHHHHH
Confidence 2333445543 1233434455566555433 3455 46777765 89996655554443222 2556654
Q ss_pred H
Q 004514 630 E 630 (747)
Q Consensus 630 E 630 (747)
.
T Consensus 196 q 196 (252)
T KOG4300|consen 196 Q 196 (252)
T ss_pred H
Confidence 3
No 50
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=49.40 E-value=62 Score=34.59 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=38.4
Q ss_pred hhcCccchhh-HhHhHHHHhhh----ccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 456 AACPFRKLSN-FTANKTIMSLA----QNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 456 ~~~Pf~kfa~-f~ANqaILeA~----~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
...|=.+++. |..|+.|++.+ .-.+.-+|+|+|-|.| .|...|+.+ ++ ++|||+..
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d 73 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEID 73 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECC
Confidence 4566667776 66666665543 3345568999999998 466677766 22 89999964
No 51
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=47.21 E-value=2.2e+02 Score=31.67 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=81.4
Q ss_pred eEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeccccccc
Q 004514 482 LHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRWDTI 560 (747)
Q Consensus 482 VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-FeF~~Ia~~~E~l 560 (747)
..|||||-|.|..=..||++|..+ +. .++-.+||.. .+.|+++.++|. .+ ..| .++++|....++.
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS------~~~L~~a~~~L~--~~--~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVS------RSELQRTLAELP--LG--NFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECC------HHHHHHHHHhhh--hc--cCCCeEEEEEEecHHHH
Confidence 479999999999999999999732 22 3788999974 567999988887 11 235 7777776432211
Q ss_pred -C-cccccccCCcEEEEEecccccccccccccccchHHHHHHHHHh--hCCc-EEEEEee--------cCCCCCCc-hHH
Q 004514 561 -Q-LEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRK--INPH-MFIHGIT--------NGAYNAPF-FVT 626 (747)
Q Consensus 561 -~-~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~--L~P~-Vfv~~e~--------n~~~nsp~-F~~ 626 (747)
. +..-.+...-.++.-.-..+.|+..+ -...+|+.|++ |+|. .|+++.- .+.||.+. .-.
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~------ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa 218 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRP------EAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTR 218 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHH------HHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhH
Confidence 0 00001111122333332345555332 13479999987 8895 5555531 23565442 222
Q ss_pred H-HHHHHHHHHHHhH
Q 004514 627 R-FREALFHFSAMFD 640 (747)
Q Consensus 627 R-F~EAL~hYsAlFD 640 (747)
+ ....|.|--..++
T Consensus 219 ~FnlN~L~~~Nr~Lg 233 (319)
T TIGR03439 219 RFVLNGLVHANEILG 233 (319)
T ss_pred HHHHHHHHHHHHHhC
Confidence 3 3455555555544
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=45.14 E-value=3.5e+02 Score=27.54 Aligned_cols=97 Identities=13% Similarity=0.251 Sum_probs=51.4
Q ss_pred eeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEecccccc
Q 004514 481 RLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRWDT 559 (747)
Q Consensus 481 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-FeF~~Ia~~~E~ 559 (747)
.-.|+|+|-+.|. .++ .++.+. |..++||||.. .+.++.+. +.++..+++ ++|.. ...++
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~~---~~~~V~giD~s------~~~l~~A~----~~~~~~~l~~i~~~~--~d~~~ 106 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIAR---PELKVTLVDSL------GKKIAFLR----EVAAELGLKNVTVVH--GRAEE 106 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHHC---CCCeEEEEeCc------HHHHHHHH----HHHHHcCCCCEEEEe--ccHhh
Confidence 3479999999993 222 223221 34699999963 23344443 344555664 44432 23333
Q ss_pred cCcccccccCCcEEEEEecccccccccccccccchHHHHHHH-HHhhCCcEEEEEe
Q 004514 560 IQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNF-IRKINPHMFIHGI 614 (747)
Q Consensus 560 l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~-Ir~L~P~Vfv~~e 614 (747)
+.. -.+=++++.|+. . +.+.+++. .+.|+|.-.++.+
T Consensus 107 ~~~----~~~fDlV~~~~~---~-----------~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 107 FGQ----EEKFDVVTSRAV---A-----------SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCC----CCCccEEEEccc---c-----------CHHHHHHHHHHhcCCCeEEEEE
Confidence 322 123346666542 1 22445555 4789998665544
No 53
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=43.70 E-value=1.1e+02 Score=30.69 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=23.2
Q ss_pred eeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecC
Q 004514 481 RLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEF 519 (747)
Q Consensus 481 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 519 (747)
.--|+|+|.+.| .++-.||.+. |...++||+.
T Consensus 17 ~~~ilDiGcG~G----~~~~~la~~~---p~~~v~gvD~ 48 (194)
T TIGR00091 17 APLHLEIGCGKG----RFLIDMAKQN---PDKNFLGIEI 48 (194)
T ss_pred CceEEEeCCCcc----HHHHHHHHhC---CCCCEEEEEe
Confidence 346999999988 3455566552 5578999996
No 54
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=43.33 E-value=2e+02 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecC
Q 004514 472 IMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEF 519 (747)
Q Consensus 472 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 519 (747)
|+..+...+.-+|+|+|.+.|. ++..++.+ |+ -+++||++
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDp 152 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDP 152 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcC
Confidence 4444433333489999999996 34445543 33 27899985
No 55
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=41.72 E-value=2.3e+02 Score=29.10 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=21.3
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
.|+|+|.+.|..-..| +.+- |..++|||+..
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDiS 76 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL---PFKHIYGVEIN 76 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC---CCCeEEEEECC
Confidence 5999999999544444 3331 23689999963
No 56
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=40.90 E-value=63 Score=30.96 Aligned_cols=40 Identities=20% Similarity=0.440 Sum_probs=27.3
Q ss_pred ccCceeEEEecccccccccHHHHHHHhcCCC-CCCeEEEeEecCC
Q 004514 477 QNSMRLHIIDFGILYGFQWPTFIQRISMRPG-GPPKLRITGIEFP 520 (747)
Q Consensus 477 ~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~g-GPP~LRITgI~~p 520 (747)
...+..+|||+|-|.|. |=+.||..-. -.|.++|+|||..
T Consensus 22 ~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~ 62 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCN 62 (141)
T ss_pred ccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECC
Confidence 45788999999999884 3334443100 0278999999964
No 57
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=40.89 E-value=2.5e+02 Score=32.01 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=57.3
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeccc-ccccC
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKR-WDTIQ 561 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~-~E~l~ 561 (747)
+|+|+|.|.|. +--.|+++. |..+||+||.. ...++-+.+.+....-.-.-.++|. ... ++.+
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S------~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~- 294 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDES------PMAVASSRLNVETNMPEALDRCEFM--INNALSGV- 294 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHHcCcccCceEEEE--EccccccC-
Confidence 79999999995 334555552 56899999974 3456666555543321100123443 221 1111
Q ss_pred cccccccCCcEEEEEecccccccccccccccchHHHHHH-HHHhhCCcEEEEEee
Q 004514 562 LEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLN-FIRKINPHMFIHGIT 615 (747)
Q Consensus 562 ~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~-~Ir~L~P~Vfv~~e~ 615 (747)
.-..=++|+.|-.|+-.+-..+. -...+++ .-+.|+|.-.+..+.
T Consensus 295 ----~~~~fDlIlsNPPfh~~~~~~~~-----ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 ----EPFRFNAVLCNPPFHQQHALTDN-----VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ----CCCCEEEEEECcCcccCccCCHH-----HHHHHHHHHHHhcccCCEEEEEE
Confidence 11122577888787654422211 1233444 445789986554443
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=40.14 E-value=2.6e+02 Score=31.73 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=31.9
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHH
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRL 537 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL 537 (747)
.|++.+.-...-+|+|+|.+.|. +...|+++.| .++|||+.. .+.++.+.+++
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS------~~~l~~A~~~~ 210 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS------AEQQKLAQERC 210 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC------HHHHHHHHHHh
Confidence 34444432334489999987773 5555666543 489999863 34455554443
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=38.85 E-value=4.7e+02 Score=27.14 Aligned_cols=108 Identities=10% Similarity=0.118 Sum_probs=63.3
Q ss_pred HHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 004514 470 KTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFE 549 (747)
Q Consensus 470 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFe 549 (747)
..|++|+.--+.-.++|+|-|.|-- --.||++ -..+|+||.. .. .-.+|.+.|++-+|+.+
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~-----G~~VtAvD~s------~~----al~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQ-----GFDVTAVDIS------PV----ALEKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHT-----T-EEEEEESS------HH----HHHHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHC-----CCeEEEEECC------HH----HHHHHHHHHhhcCceeE
Confidence 3467777655667899999998831 1235655 2889999964 22 23457788999999966
Q ss_pred EEEecccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHh-hCCcEE
Q 004514 550 YNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRK-INPHMF 610 (747)
Q Consensus 550 F~~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~-L~P~Vf 610 (747)
.... .+++ ..+. ++.=+|.+..-|++|..+ -++.+++.|++ ++|--+
T Consensus 81 ~~~~--Dl~~-----~~~~-~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 81 TRVA--DLND-----FDFP-EEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGY 128 (192)
T ss_dssp EEE---BGCC-----BS-T-TTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEE
T ss_pred EEEe--cchh-----cccc-CCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEE
Confidence 5433 2222 2332 344456666667787643 35677777754 788744
No 60
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=38.82 E-value=2e+02 Score=29.10 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=27.4
Q ss_pred CceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHH
Q 004514 479 SMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRL 537 (747)
Q Consensus 479 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL 537 (747)
....+|+|+|-+.|. +...|+.+ + .++|||+.. ...++.+.+++
T Consensus 62 ~~~~~vLDvGcG~G~----~~~~l~~~--~---~~v~~~D~s------~~~i~~a~~~~ 105 (230)
T PRK07580 62 LTGLRILDAGCGVGS----LSIPLARR--G---AKVVASDIS------PQMVEEARERA 105 (230)
T ss_pred CCCCEEEEEeCCCCH----HHHHHHHc--C---CEEEEEECC------HHHHHHHHHHH
Confidence 345689999999985 33445543 2 349999963 34455554443
No 61
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=37.63 E-value=3.8e+02 Score=27.62 Aligned_cols=105 Identities=10% Similarity=0.012 Sum_probs=57.0
Q ss_pred eEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeccccccc
Q 004514 482 LHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRWDTI 560 (747)
Q Consensus 482 VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-FeF~~Ia~~~E~l 560 (747)
-.|+|++-+.| ..-|.+|+.. . -+||+|+.. .+.++.+.+. ++..|+. .+| +...+...
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~---a--~~V~~vE~~------~~a~~~a~~N----l~~~~~~~v~~--~~~D~~~~ 114 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY---A--AGATLLEMD------RAVAQQLIKN----LATLKAGNARV--VNTNALSF 114 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC---C--CEEEEEECC------HHHHHHHHHH----HHHhCCCcEEE--EEchHHHH
Confidence 36899999998 3344566642 1 489999863 2333333333 3334442 333 22222111
Q ss_pred CcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHh---hCCcEEEEEeecCCC
Q 004514 561 QLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRK---INPHMFIHGITNGAY 619 (747)
Q Consensus 561 ~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~---L~P~Vfv~~e~n~~~ 619 (747)
-. .. -.+=++|++|=.|+- .-...++..|.. ++|+-+|.++.+...
T Consensus 115 l~-~~-~~~fDlV~~DPPy~~-----------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 115 LA-QP-GTPHNVVFVDPPFRK-----------GLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred Hh-hc-CCCceEEEECCCCCC-----------ChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 00 01 112357777777641 123467788877 689988877765543
No 62
>PRK06922 hypothetical protein; Provisional
Probab=37.61 E-value=2.4e+02 Score=34.75 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 004514 472 IMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYN 551 (747)
Q Consensus 472 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~ 551 (747)
|++... .-.|+|+|.|.|. ++..|+.+. |..++||||.+ ...++.+.+++ +..+.++++
T Consensus 413 i~d~~~---g~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS------~~MLe~Ararl----~~~g~~ie~- 471 (677)
T PRK06922 413 ILDYIK---GDTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS------ENVIDTLKKKK----QNEGRSWNV- 471 (677)
T ss_pred HhhhcC---CCEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHh----hhcCCCeEE-
Confidence 444443 3479999999983 445666552 56899999974 34455554443 233455443
Q ss_pred EecccccccCcccccccCCcEEEEEeccccccccc----ccc--cccchHHHHHHHHHhhCCcEE
Q 004514 552 AIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLD----ETI--AVDSSRNIFLNFIRKINPHMF 610 (747)
Q Consensus 552 ~Ia~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~d----esv--~~~spRd~vL~~Ir~L~P~Vf 610 (747)
+.....++. + .+.++.+=+|-|.+-+|++.+ +.. ....+...+-+..|.|+|.-.
T Consensus 472 -I~gDa~dLp--~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 472 -IKGDAINLS--S-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred -EEcchHhCc--c-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcE
Confidence 222211111 0 033343444445555677642 100 011233334444578999743
No 63
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=36.00 E-value=1.9e+02 Score=28.35 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
.|++.+.-...-+|+|+|.|.|. |...|+.+ + -++|+|+..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~ 44 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID 44 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC
Confidence 45666543344489999999884 55666666 2 389999964
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=34.85 E-value=5.3e+02 Score=28.87 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=57.7
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCc
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQL 562 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~ 562 (747)
+|+|+|-|.|. |-..|+.+. |..++|+||.. ...++.+.+++.. .++..++... ...
T Consensus 199 ~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis------~~Al~~A~~nl~~----n~l~~~~~~~--D~~---- 255 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVS------AAALESSRATLAA----NGLEGEVFAS--NVF---- 255 (342)
T ss_pred eEEEeccCcCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHH----cCCCCEEEEc--ccc----
Confidence 69999999996 444555542 45789999974 4556666555543 4555554321 111
Q ss_pred ccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEEEeec
Q 004514 563 EELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITN 616 (747)
Q Consensus 563 edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n 616 (747)
+.+ -.+=++|+.|-.| |...+.. .....+.+-...+.|+|.-....+.|
T Consensus 256 ~~~-~~~fDlIvsNPPF--H~g~~~~--~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 256 SDI-KGRFDMIISNPPF--HDGIQTS--LDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccc-CCCccEEEECCCc--cCCcccc--HHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111 1223677878765 3332211 01123333344566999865544444
No 65
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=34.62 E-value=2.5e+02 Score=32.25 Aligned_cols=89 Identities=24% Similarity=0.218 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhcCccchhhHhHhHHHHhhhccCc---eeE-------EEec-----ccccccccHHHHHHHhcCCCCCC
Q 004514 446 DILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSM---RLH-------IIDF-----GILYGFQWPTFIQRISMRPGGPP 510 (747)
Q Consensus 446 ~~lkAy~~f~~~~Pf~kfa~f~ANqaILeA~~g~~---~VH-------IIDf-----gI~~G~QWP~Liq~LA~R~gGPP 510 (747)
.+|.+|.+--+ ..+...|.-+|.-+|-+-+.+++ +=| +-.| --+++|-|..||-.++.|.+
T Consensus 182 A~LA~~e~~~~-~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~--- 257 (388)
T COG2942 182 AMLAAYEATGE-KTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG--- 257 (388)
T ss_pred HHHHHHhccCc-hhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhc---
Confidence 34445544444 56677788888888877765432 111 1122 23577889999999998743
Q ss_pred eEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 004514 511 KLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIA 554 (747)
Q Consensus 511 ~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia 554 (747)
...+-++.+||..-|-..|+.-++..+.
T Consensus 258 ----------------~~~l~~~A~~lf~~a~~~g~d~~~gg~~ 285 (388)
T COG2942 258 ----------------RAWLIEAARRLFDIAVADGWDPERGGAY 285 (388)
T ss_pred ----------------hhHHHHHHHHHHHHHHHhccCcccCeEE
Confidence 2447788899999998888877765543
No 66
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=33.43 E-value=2.4e+02 Score=29.06 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=42.7
Q ss_pred ceeEE-Eeccc---cccccc---HHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhc----CCcE
Q 004514 480 MRLHI-IDFGI---LYGFQW---PTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDF----NVPF 548 (747)
Q Consensus 480 ~~VHI-IDfgI---~~G~QW---P~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~----gVpF 548 (747)
-+||| ||=|. .+|+.+ +.+++.+.. -|.|+|.||..--+.....+...+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46898 89884 489864 455555543 356999998542111112234555666666666665 5777
Q ss_pred EEEEec
Q 004514 549 EYNAIA 554 (747)
Q Consensus 549 eF~~Ia 554 (747)
++-.+-
T Consensus 193 ~~is~G 198 (222)
T cd00635 193 KELSMG 198 (222)
T ss_pred CEEECc
Confidence 765554
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=32.11 E-value=1.6e+02 Score=31.20 Aligned_cols=70 Identities=13% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcCccchhhHhHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 445 ADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 445 ~~~lkAy~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
.++.+|.+.|.+.-=|..+....+ ..|.+.+ ....-+|+|+|.|.|.--..|.+.+... ....++|||..
T Consensus 52 ~~~~~ar~~fl~~g~y~~l~~~i~-~~l~~~l-~~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s 121 (272)
T PRK11088 52 KEMMQARRAFLDAGHYQPLRDAVA-NLLAERL-DEKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDIS 121 (272)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHH-HHHHHhc-CCCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCC
Confidence 456666666655432322222211 1222222 2344679999999996444444433211 12579999963
No 68
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=31.92 E-value=2.8e+02 Score=28.03 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=49.8
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCc
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQL 562 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~l~~ 562 (747)
+|+|+|-+.|. +...|+++. |..++|||+.. .+.++...+++ +..|+.-....+....+....
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s------~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~ 64 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS------PEQAEVGRERI----RALGLQGRIRIFYRDSAKDPF 64 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHH----HhcCCCcceEEEecccccCCC
Confidence 68999988884 344566543 34689999963 34455554443 334544322222222211111
Q ss_pred ccccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcEEE
Q 004514 563 EELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFI 611 (747)
Q Consensus 563 edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~Vfv 611 (747)
. +.=++++ +...++|+.+ ...+|+.+ +-|+|.-.+
T Consensus 65 ~----~~fD~I~--~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l 100 (224)
T smart00828 65 P----DTYDLVF--GFEVIHHIKD--------KMDLFSNISRHLKDGGHL 100 (224)
T ss_pred C----CCCCEee--hHHHHHhCCC--------HHHHHHHHHHHcCCCCEE
Confidence 1 1112332 3444566633 24566666 559998443
No 69
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=29.12 E-value=1.2e+02 Score=35.43 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHHhhhccCceeEEEecccccccc--cHHHHHHHhcCC--CCCCeEEE----eEecCCCCCCCChHHHHHHHHHHHHHH
Q 004514 470 KTIMSLAQNSMRLHIIDFGILYGFQ--WPTFIQRISMRP--GGPPKLRI----TGIEFPQPGFRPAERVEETGRRLADYA 541 (747)
Q Consensus 470 qaILeA~~g~~~VHIIDfgI~~G~Q--WP~Liq~LA~R~--gGPP~LRI----TgI~~p~~gfrp~e~leetG~RL~~~A 541 (747)
.+|-++.....+-+||=|.-|---. =--..++|...| +..+.+.| ||++.|.. .+.++.+-+++.++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~----~~~v~~~l~~i~~~a 78 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIV----AAWVNASLERMQEAA 78 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHH----HHHHHHHHHHHHHHH
Confidence 3455555555666777776542100 001123433221 22356777 77877653 567888899999999
Q ss_pred HhcCCcEEEEEec
Q 004514 542 KDFNVPFEYNAIA 554 (747)
Q Consensus 542 ~~~gVpFeF~~Ia 554 (747)
++.|+||..+.+.
T Consensus 79 ~~~~lpi~~~~v~ 91 (447)
T TIGR03183 79 QDQGLPIEPHRLT 91 (447)
T ss_pred HHcCCCeEEEecC
Confidence 9999999988764
No 70
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=28.16 E-value=1.1e+02 Score=31.03 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=45.3
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHHHHhcC
Q 004514 374 LRSLLIHCA-QAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAG 428 (747)
Q Consensus 374 L~~LLl~CA-qAVa~gd~~~A~~lL~~Irq~sSp~GD~~QRLA~yFa~AL~aRL~g 428 (747)
+.++|+.|. ..+..++...|..+|..|.++..|..+...|+...|.+||-.=+.|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 455666655 6778889999999999999999888788899999999999665444
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=27.27 E-value=2.5e+02 Score=28.72 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=41.9
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeccccc
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRWD 558 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVp-FeF~~Ia~~~E 558 (747)
...+|+|+|.+.| .+...|+.+. |..++|||+.. ...++.+.+ .++..+++ .+| +...+.
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~------~~~~~~a~~----~~~~~~~~~~~~--~~~d~~ 147 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---PDARVTAVDIS------PEALAVARK----NAARLGLDNVTF--LQSDWF 147 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHHH----HHHHcCCCeEEE--EECchh
Confidence 3468999999998 3444445432 45799999963 233443333 34445665 333 222222
Q ss_pred ccCcccccccCCcEEEEEeccc
Q 004514 559 TIQLEELKIDRDEVLVVNCLYR 580 (747)
Q Consensus 559 ~l~~edL~i~~dE~LaVNc~~~ 580 (747)
+ .+.-.+=++|+.|-.|.
T Consensus 148 ~----~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 148 E----PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred c----cCcCCceeEEEECCCCC
Confidence 1 11112335777776654
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=26.90 E-value=1.8e+02 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=21.6
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
+|+|+|.+.|.. ...|+++. |..++||||..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 899999998843 33344442 33889999963
No 73
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=26.88 E-value=6.4e+02 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=23.6
Q ss_pred ceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 480 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
..-.|+|+|-+.|.-...| +.+. |..+|||||..
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~~---p~~~v~gVD~s 73 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKAN---PDINFIGIEVH 73 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHHC---CCccEEEEEec
Confidence 4457999999999654444 3331 44689999963
No 74
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=26.79 E-value=71 Score=34.49 Aligned_cols=26 Identities=8% Similarity=-0.153 Sum_probs=18.8
Q ss_pred ccCceeEEEecccccccccHHHHHHHhcCC
Q 004514 477 QNSMRLHIIDFGILYGFQWPTFIQRISMRP 506 (747)
Q Consensus 477 ~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~ 506 (747)
.|++.|||||+ +.+ ++ .+|+.+.+..
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 58999999999 444 66 5666666543
No 75
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.77 E-value=1.1e+02 Score=31.81 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=35.8
Q ss_pred HhhhccCceeEEEecccccc---cccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHH
Q 004514 473 MSLAQNSMRLHIIDFGILYG---FQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYA 541 (747)
Q Consensus 473 LeA~~g~~~VHIIDfgI~~G---~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A 541 (747)
|-+++=.+.=|++|+|-+.| .+|. ++ .|..|+++|+- ..++++-|.+.+.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~------~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIER------DEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEec------CHHHHHHHHHHHHHhC
Confidence 44444444459999999987 4664 21 37899999983 4566777777665554
No 76
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=25.54 E-value=2.3e+02 Score=26.12 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEEEe
Q 004514 569 RDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGI 614 (747)
Q Consensus 569 ~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~~e 614 (747)
.+.+-+....|..| |+..++...++.++|+-++=++
T Consensus 71 ~~~~~~~~VPYSeH----------SSf~EL~~Fv~~l~P~~IiPtV 106 (110)
T PF07522_consen 71 RGNVRIYRVPYSEH----------SSFSELKEFVSFLKPKKIIPTV 106 (110)
T ss_pred CCCceEEEEecccC----------CCHHHHHHHHHhcCCcEEEccc
Confidence 34556666666655 6778999999999999876443
No 77
>PRK03646 dadX alanine racemase; Reviewed
Probab=25.52 E-value=97 Score=34.64 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=33.9
Q ss_pred ceeEE-Eecccc-cccc---cHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHH
Q 004514 480 MRLHI-IDFGIL-YGFQ---WPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADY 540 (747)
Q Consensus 480 ~~VHI-IDfgI~-~G~Q---WP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~ 540 (747)
-+||| ||-|++ .|+. |+.+++.+.. .|.|+|+||-.- |..++....|.+.+.+|
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH---~a~ad~~~~~~~Q~~~F 175 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSH---FARADHPDGISEAMARI 175 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcC---CCCCCCCCHHHHHHHHH
Confidence 46899 999987 7985 5666666644 356999999652 22232222355555555
No 78
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=25.43 E-value=1.2e+03 Score=27.62 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=28.3
Q ss_pred eeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHH
Q 004514 481 RLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRL 537 (747)
Q Consensus 481 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL 537 (747)
...|+|+|.|.| .+.-.|+.+. |..++||||.. .+.++.+.+++
T Consensus 139 ~~~VLDlG~GsG----~iai~la~~~---p~~~v~avDis------~~al~~A~~N~ 182 (506)
T PRK01544 139 FLNILELGTGSG----CIAISLLCEL---PNANVIATDIS------LDAIEVAKSNA 182 (506)
T ss_pred CCEEEEccCchh----HHHHHHHHHC---CCCeEEEEECC------HHHHHHHHHHH
Confidence 357999999988 3444555442 44799999973 34455555443
No 79
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=25.23 E-value=75 Score=28.75 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcEE
Q 004514 528 ERVEETGRRLADYAKDFNVPFE 549 (747)
Q Consensus 528 e~leetG~RL~~~A~~~gVpFe 549 (747)
+.+.+.-.+|.+.|+.-||||+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~fe 69 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFE 69 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH
Confidence 3577778899999999999986
No 80
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=25.05 E-value=81 Score=34.26 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=21.0
Q ss_pred ccCceeEEEecccccccccHHHHHHHhc
Q 004514 477 QNSMRLHIIDFGILYGFQWPTFIQRISM 504 (747)
Q Consensus 477 ~g~~~VHIIDfgI~~G~QWP~Liq~LA~ 504 (747)
.|++.|||||++-+.+-+ -.+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999766666 456677776
No 81
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=24.81 E-value=4.5e+02 Score=29.17 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=24.6
Q ss_pred eeEE-Eecccc-ccccc---HHHHHHHhcCCCCCCeEEEeEe
Q 004514 481 RLHI-IDFGIL-YGFQW---PTFIQRISMRPGGPPKLRITGI 517 (747)
Q Consensus 481 ~VHI-IDfgI~-~G~QW---P~Liq~LA~R~gGPP~LRITgI 517 (747)
+||| ||-|++ .|+.+ ..+++.+.. -|.|+|.||
T Consensus 118 ~vhlkvDtGm~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi 155 (353)
T cd06815 118 KIILMVDLGDLREGVLPEDLLDFVEEILK----LPGIELVGI 155 (353)
T ss_pred ceEEEEecCCCccccCHHHHHHHHHHHhC----CCCcEEEec
Confidence 6898 899997 89974 455555533 357999999
No 82
>PRK10867 signal recognition particle protein; Provisional
Probab=24.45 E-value=4.4e+02 Score=30.68 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHhccCCC----CC-ChhhHHHHHHHHHHHHHhcC
Q 004514 376 SLLIHCAQAVAADD--RRSAHEFLKQIRQHSSP----FG-DGNQRLAKCFADGLEARLAG 428 (747)
Q Consensus 376 ~LLl~CAqAVa~gd--~~~A~~lL~~Irq~sSp----~G-D~~QRLA~yFa~AL~aRL~g 428 (747)
..|-+--.|.-..| ...|.+++++|++.+.- .+ .+.|.+..+..+.|...|.+
T Consensus 29 ~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~ 88 (433)
T PRK10867 29 EALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGG 88 (433)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCC
Confidence 44444444444444 57899999999876432 11 35677888888888887754
No 83
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=24.15 E-value=1.1e+02 Score=35.93 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=45.9
Q ss_pred ccccccccccccccchHHHHHHHHHhhCCcEEE--E-Eee-----cCCCCCCchHHHHHHHHHHHHHHhHHhhh
Q 004514 579 YRAKNLLDETIAVDSSRNIFLNFIRKINPHMFI--H-GIT-----NGAYNAPFFVTRFREALFHFSAMFDMLET 644 (747)
Q Consensus 579 ~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv--~-~e~-----n~~~nsp~F~~RF~EAL~hYsAlFDsLda 644 (747)
-|.|++..+.+ --|-.+|+.||+.+|++=| + ++. +++...|..-..+...++.|+.+.|-.+.
T Consensus 77 SR~~~~~~~~~---~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~ 147 (497)
T PF13552_consen 77 SRIHHLSLEEA---LERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEG 147 (497)
T ss_pred hcCCCCCHHHH---HHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhh
Confidence 35667655443 2467899999999998533 2 222 24556788889999999999999999884
No 84
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=24.03 E-value=1.6e+02 Score=31.70 Aligned_cols=111 Identities=19% Similarity=0.294 Sum_probs=67.5
Q ss_pred hccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 004514 476 AQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAK 555 (747)
Q Consensus 476 ~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~ 555 (747)
+.-+.--.|+|+|.|-|-+ -+-|++|- |--.|||||.. .+.|+++.+||- ++-|+-
T Consensus 26 Vp~~~~~~v~DLGCGpGns----TelL~~Rw---P~A~i~GiDsS------~~Mla~Aa~rlp------~~~f~~----- 81 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNS----TELLARRW---PDAVITGIDSS------PAMLAKAAQRLP------DATFEE----- 81 (257)
T ss_pred CCccccceeeecCCCCCHH----HHHHHHhC---CCCeEeeccCC------HHHHHHHHHhCC------CCceec-----
Confidence 3345556799999999855 34556664 45689999963 455666655542 233331
Q ss_pred cccccCccccccc-CCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcEEEEEeecCCCCCCc
Q 004514 556 RWDTIQLEELKID-RDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPF 623 (747)
Q Consensus 556 ~~E~l~~edL~i~-~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp~ 623 (747)
-++...+-+ +-.+|.-|..| |-|.|.. +.+-+++-.|.|.-++-+-+-.++..|.
T Consensus 82 ----aDl~~w~p~~~~dllfaNAvl--qWlpdH~-------~ll~rL~~~L~Pgg~LAVQmPdN~deps 137 (257)
T COG4106 82 ----ADLRTWKPEQPTDLLFANAVL--QWLPDHP-------ELLPRLVSQLAPGGVLAVQMPDNLDEPS 137 (257)
T ss_pred ----ccHhhcCCCCccchhhhhhhh--hhccccH-------HHHHHHHHhhCCCceEEEECCCccCchh
Confidence 122222221 22456667765 4566642 4566888899999887666666776664
No 85
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.71 E-value=3.4e+02 Score=29.74 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 472 IMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 472 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
|++++.-...=.|+|+|-|.|. |-..|+.+. -+++||+..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD 67 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEID 67 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECC
Confidence 3333333334479999999885 444555442 269999863
No 86
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=22.54 E-value=7.3e+02 Score=24.19 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=22.1
Q ss_pred ccccCCcEEEEEecccccccccccccccchHHHHHHHH-HhhCCcE
Q 004514 565 LKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHM 609 (747)
Q Consensus 565 L~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~I-r~L~P~V 609 (747)
|....+.+=+|-|.+.||++.| + ..+|+.| |-|+|.-
T Consensus 38 lp~~~~~fD~v~~~~~l~~~~d-------~-~~~l~ei~rvLkpGG 75 (160)
T PLN02232 38 LPFDDCEFDAVTMGYGLRNVVD-------R-LRAMKEMYRVLKPGS 75 (160)
T ss_pred CCCCCCCeeEEEecchhhcCCC-------H-HHHHHHHHHHcCcCe
Confidence 3333343444556788888854 3 4555555 6799974
No 87
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=22.39 E-value=1.6e+02 Score=30.76 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred ceeEE-Eecc--cc-cccccH---HHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhc
Q 004514 480 MRLHI-IDFG--IL-YGFQWP---TFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDF 544 (747)
Q Consensus 480 ~~VHI-IDfg--I~-~G~QWP---~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~ 544 (747)
-.||| ||-| ++ .|+.+. .+++.+. .-|.|++.||-.-.+.....+..++.-+++.++.+.+
T Consensus 121 ~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~----~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l 188 (229)
T TIGR00044 121 LNVLLQINISDEESKSGIQPEELLELAIQIE----ELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQI 188 (229)
T ss_pred ceEEEEEECCCCCCCCCCCHHHHHHHHHHHh----cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36888 8994 54 898653 4444443 3578999999543222222344444555666655544
No 88
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=22.16 E-value=1.6e+02 Score=30.17 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=40.0
Q ss_pred EEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecccccc
Q 004514 483 HIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDT 559 (747)
Q Consensus 483 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~ 559 (747)
.|+|+|-|-|| |.+.=+++. |.+++|-|+.- +.=-.-|...++.+|++ ..+.+..+.|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~----------~KK~~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESV----------GKKVAFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESS----------HHHHHHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCC----------chHHHHHHHHHHHhCCC-CEEEEEeeecc
Confidence 59999988776 898888885 78999999852 12224567778888988 33444455555
No 89
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=22.08 E-value=3.3e+02 Score=30.10 Aligned_cols=72 Identities=18% Similarity=0.368 Sum_probs=42.1
Q ss_pred ceeEE-Eecccc-ccc---ccHHHHHHHhcCCCCCCeEEEeEecCCCCCC-CC-hHHHHHHHHHHHHHHHhc---CCcEE
Q 004514 480 MRLHI-IDFGIL-YGF---QWPTFIQRISMRPGGPPKLRITGIEFPQPGF-RP-AERVEETGRRLADYAKDF---NVPFE 549 (747)
Q Consensus 480 ~~VHI-IDfgI~-~G~---QWP~Liq~LA~R~gGPP~LRITgI~~p~~gf-rp-~e~leetG~RL~~~A~~~---gVpFe 549 (747)
-+||| ||-|.. +|+ +++.+++.+... |.|++.||..--+.. .+ .+...+.-+++.++++.+ |++++
T Consensus 119 ~~v~l~vdtG~~R~G~~~~e~~~~~~~i~~~----~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~~~~ 194 (367)
T cd00430 119 LKVHLKIDTGMGRLGFRPEEAEELLEALKAL----PGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPP 194 (367)
T ss_pred eEEEEEEcCCCCCCCCCHHHHHHHHHHHHhC----CCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 46888 788865 787 577777777543 569999995422211 11 223334444554444443 67766
Q ss_pred EEEecc
Q 004514 550 YNAIAK 555 (747)
Q Consensus 550 F~~Ia~ 555 (747)
+..+..
T Consensus 195 ~v~~g~ 200 (367)
T cd00430 195 LKHLAN 200 (367)
T ss_pred cEEccC
Confidence 666653
No 90
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=22.06 E-value=2.1e+02 Score=29.41 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=65.6
Q ss_pred ceeEEEeccccc---ccccHHHHHHHhcCCCCCCeEEE------eEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 004514 480 MRLHIIDFGILY---GFQWPTFIQRISMRPGGPPKLRI------TGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550 (747)
Q Consensus 480 ~~VHIIDfgI~~---G~QWP~Liq~LA~R~gGPP~LRI------TgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF 550 (747)
.+||||.|=-+. +-.=-++|.+|+.+ .+.| |||... +....++.-+.+|+++.++.|-|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~d-------d~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINAD-------DAIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECc-------cchhhHHHHHHHHHHHhcccCCc
Confidence 579999886442 23455789999654 3777 888743 33677889999999999888876
Q ss_pred EEecccccccCcccccccCC-cE-EEEEecccccccccccccccchHHHHHHHHHhh
Q 004514 551 NAIAKRWDTIQLEELKIDRD-EV-LVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKI 605 (747)
Q Consensus 551 ~~Ia~~~E~l~~edL~i~~d-E~-LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L 605 (747)
..+...-+..-.....+..- ++ .+||-.-++..-....+. ..-.+.++..|+++
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~-~ee~e~~~~li~~l 182 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALS-DSDIQTVISLVNGL 182 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 66543212222223444332 55 577766544433222110 01123466666553
No 91
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=21.31 E-value=3.8e+02 Score=28.38 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=29.4
Q ss_pred HhHhHHHHhhh----ccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCC
Q 004514 466 FTANKTIMSLA----QNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFP 520 (747)
Q Consensus 466 f~ANqaILeA~----~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 520 (747)
|..++.|++.+ .-.+.=+|+|+|-|.|. |...|+.+ + .++|||+..
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~-~----~~v~~vEid 60 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKR-A----KKVYAIELD 60 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHh-C----CEEEEEECC
Confidence 33455544443 22344579999999984 55666666 2 379999964
No 92
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=20.89 E-value=2.2e+02 Score=31.55 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=39.4
Q ss_pred ceeEE-Eecccc-cccc---cHHHHHHHhcCCCCCCeEE-EeEecCCCCCCC-Ch-HHHHHHHHHHHHHHHh---cCCcE
Q 004514 480 MRLHI-IDFGIL-YGFQ---WPTFIQRISMRPGGPPKLR-ITGIEFPQPGFR-PA-ERVEETGRRLADYAKD---FNVPF 548 (747)
Q Consensus 480 ~~VHI-IDfgI~-~G~Q---WP~Liq~LA~R~gGPP~LR-ITgI~~p~~gfr-p~-e~leetG~RL~~~A~~---~gVpF 548 (747)
-+||| ||-|++ +|+. +..+++.+... |.|+ |.||..--+... +. +..++.-+++.++++. .|+++
T Consensus 120 ~~V~l~VdtGm~R~Gi~~~e~~~~~~~i~~~----~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~ 195 (367)
T TIGR00492 120 LKVHLKIDTGMNRLGVKPDEAALFVQKLRQL----KKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIEP 195 (367)
T ss_pred eEEEEEeeCCCCCCCCChHHHHHHHHHHHhC----CCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCC
Confidence 47898 899976 7885 44555555432 4699 999954322111 11 1233333444444433 36666
Q ss_pred EEEEecc
Q 004514 549 EYNAIAK 555 (747)
Q Consensus 549 eF~~Ia~ 555 (747)
++..++.
T Consensus 196 ~~~~~~n 202 (367)
T TIGR00492 196 PFRHIAN 202 (367)
T ss_pred CcEEccC
Confidence 6655543
No 93
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=20.44 E-value=2.8e+02 Score=33.82 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=53.1
Q ss_pred ccccc-cccHHHHHHHhc---CCCCCCeEEEeEecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEE-EecccccccCc
Q 004514 488 GILYG-FQWPTFIQRISM---RPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYN-AIAKRWDTIQL 562 (747)
Q Consensus 488 gI~~G-~QWP~Liq~LA~---R~gGPP~LRITgI~~p~~gfrp~e~leetG~RL~~~A~~~gVpFeF~-~Ia~~~E~l~~ 562 (747)
|+..| -||-.|.++|.. +.++.|.+-|+..+.. .|.. |-+-|.++|+.-|++-+|. .| ++|..
T Consensus 354 g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~------eED~--T~~YL~d~a~qAG~~t~~~~~i----edL~~ 421 (619)
T PRK10507 354 YKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDI------EENY--HAQFMQQALHQAGFETKILRGL----DELRW 421 (619)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCC------CcHH--HHHHHHHHHHHCCCceEEecCH----HHeEE
Confidence 34444 588888777763 3344578889977532 1222 7788999999999998886 34 33333
Q ss_pred c-cccccCCcEEEEEecccccc
Q 004514 563 E-ELKIDRDEVLVVNCLYRAKN 583 (747)
Q Consensus 563 e-dL~i~~dE~LaVNc~~~Lh~ 583 (747)
. +=.+-..+-..|.++|+|..
T Consensus 422 d~~G~~~D~dg~~I~~vfKlyP 443 (619)
T PRK10507 422 DAAGQLIDGDGRLVNCVWKTWA 443 (619)
T ss_pred CCCCcEECCCCCEeeeeeeccc
Confidence 2 11233345567899998763
Done!