Query 004514
Match_columns 747
No_of_seqs 231 out of 708
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 18:17:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004514.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1821-1824//hhsearch_pdb/004514hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gek_A TRNA (CMO5U34)-methyltr 1.0 1 1 45.1 12.9 171 479-700 69-242 (261)
2 3dtn_A Putative methyltransfer 1.0 1 1 37.2 9.8 176 470-700 33-211 (234)
3 3htx_A HEN1; HEN1, small RNA m 1.0 1 1 35.6 12.2 125 472-620 713-840 (950)
4 2aot_A HMT, histamine N-methyl 1.0 1 1 35.0 14.7 155 443-614 11-171 (292)
5 4a6d_A Hydroxyindole O-methylt 1.0 1 1 30.1 10.0 161 468-700 167-331 (353)
6 3dp7_A SAM-dependent methyltra 1.0 1 1 29.5 11.7 166 472-701 171-340 (363)
7 1vl5_A Unknown conserved prote 1.0 1 1 29.3 14.7 110 472-614 29-139 (260)
8 3ccf_A Cyclopropane-fatty-acyl 1.0 1 1 28.3 12.1 124 471-632 48-171 (279)
9 3mgg_A Methyltransferase; NYSG 1.0 1 1 28.1 13.1 104 479-614 36-141 (276)
10 3dlc_A Putative S-adenosyl-L-m 1.0 1 1 28.0 13.6 112 468-613 32-146 (219)
No 1
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=1.00 E-value=1 Score=45.09 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=89.5
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 85069976355566650899999844999999189967328999999858999999999999885697689987145534
Q 004514 479 SMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWD 558 (747)
Q Consensus 479 ~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVpFeF~~Ia~~~E 558 (747)
...-+|+|+|-+.|. +...|+.+ .++|..+|||||.. .+-|+...+++..+.. ..+.+|. ....+
T Consensus 69 ~~~~~vLDlGcGtG~----~~~~la~~-~~~~~~~v~gvD~s------~~ml~~A~~~~~~~~~--~~~v~~~--~~D~~ 133 (261)
T 4gek_A 69 QPGTQVYDLGCSLGA----ATLSVRRN-IHHDNCKIIAIDNS------PAMIERCRRHIDAYKA--PTPVDVI--EGDIR 133 (261)
T ss_dssp CTTCEEEEETCTTTH----HHHHHHHT-CCSSSCEEEEEESC------HHHHHHHHHHHHTSCC--SSCEEEE--ESCTT
T ss_pred CCCCEEEEEECCCCH----HHHHHHHH-CCCCCCEEEEEECC------HHHHHHHHHHHHHHCC--CCEEEEE--ECCCC
T ss_conf 997989999478998----99999985-48899889999898------9999999987775245--7307996--33322
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCEE-EEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 33722344568957999722222322111001456179999999-84188589-99863388898824788999998789
Q 004514 559 TIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMF-IHGITNGAYNAPFFVTRFREALFHFS 636 (747)
Q Consensus 559 ~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vf-v~~e~ng~~n~p~F~~RF~EAL~yYS 636 (747)
+ +...+ .=+|-|.+.||++.++ .|..+|+.| |.|+|... ++.+... ...+.+...+.+. +
T Consensus 134 ~-----~~~~~--~d~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~~~-~~~~~~~~~~~~~-~--- 195 (261)
T 4gek_A 134 D-----IAIEN--ASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEKFS-FEDAKVGELLFNM-H--- 195 (261)
T ss_dssp T-----CCCCS--EEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEBC-CSSHHHHHHHHHH-H---
T ss_pred C-----CCCCC--CCCCEEEEEEEECCCH------HHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHHHHHH-H---
T ss_conf 2-----23343--4511256552106715------67699999998739983899996467-7887787899999-9---
Q ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 98687642089999-99999999999997857564148866556303456999998289920259
Q 004514 637 AMFDMLETIVPRED-RERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPL 700 (747)
Q Consensus 637 AlFDsLDa~~pr~~-~eR~~iEr~~lgreI~NVVAcEG~eRvER~Ety~qWq~R~~rAGF~~lpL 700 (747)
.-|-......+.+- ..|..+ +++-++.+.+.++.++..|||+.+.+
T Consensus 196 ~~~~~~~g~s~~ei~~~~~~l------------------~~~~~~~s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 196 HDFKRANGYSELEISQKRSML------------------ENVMLTDSVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp HHHHHHTTGGGSTTHHHHHHH------------------HHHCCCBCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHCCCCHHHHHHHHHHH------------------CCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 999987599889998777654------------------03656899999999999859983899
No 2
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=37.21 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=90.6
Q ss_pred HHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99984320-68506997635556665089999984499999918996732899999985899999999999988569768
Q 004514 470 KTIMSLAQ-NSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPF 548 (747)
Q Consensus 470 qaILeA~~-g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVpF 548 (747)
+.+++.+. ..+...|+|+|-+.|.- ...|+.+- |..++||||.. ...++.+.+++. ..+ ..
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~----~~~l~~~~---~~~~v~~vD~s------~~~~~~a~~~~~----~~~-~~ 94 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLL----SAFLMEKY---PEATFTLVDMS------EKMLEIAKNRFR----GNL-KV 94 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHH----HHHHHHHC---TTCEEEEEESC------HHHHHHHHHHTC----SCT-TE
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCHH----HHHHHHHC---CCCEEEEEECC------HHHHHHHHHHHC----CCC-CE
T ss_conf 99999842578998599956988799----99999849---99839999799------999999998616----489-88
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCEEEEEEECCCCCCCCHHHH
Q ss_conf 998714553433722344568957999722222322111001456179999999-8418858999863388898824788
Q 004514 549 EYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIHGITNGAYNAPFFVTR 627 (747)
Q Consensus 549 eF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~~e~ng~~n~p~F~~R 627 (747)
+| +....+.+. .. +..=+|-|..-|+++.+. .+..+|+.+ |.|+|.-.++.......+.+.+...
T Consensus 95 ~~--~~~d~~~~~-----~~-~~fD~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 160 (234)
T 3dtn_A 95 KY--IEADYSKYD-----FE-EKYDMVVSALSIHHLEDE------DKKELYKRSYSILKESGIFINADLVHGETAFIENL 160 (234)
T ss_dssp EE--EESCTTTCC-----CC-SCEEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH
T ss_pred EE--EECCHHCCC-----CC-CCCEEEEEECCCCCCCHH------HHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 99--957410168-----77-880599995721028978------99999999998568995899988347897135568
Q ss_pred HHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999878998687642-08999999999999999997857564148866556303456999998289920259
Q 004514 628 FREALFHFSAMFDMLET-IVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPL 700 (747)
Q Consensus 628 F~EAL~yYSAlFDsLDa-~~pr~~~eR~~iEr~~lgreI~NVVAcEG~eRvER~Ety~qWq~R~~rAGF~~lpL 700 (747)
+...+..+ +.. .++ .. ++.+..... ...++-+...|...+..|||+.+..
T Consensus 161 ~~~~~~~~------~~~~~~~---~~-----------~~~~~~~~~---~~~~~~~~~~~~~ll~~aGF~~v~~ 211 (234)
T 3dtn_A 161 NKTIWRQY------VENSGLT---EE-----------EIAAGYERS---KLDKDIEMNQQLNWLKEAGFRDVSC 211 (234)
T ss_dssp HHHHHHHH------HHTSSCC---HH-----------HHHTTC-------CCCCCBHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHH------HHHCCCC---HH-----------HHHHHHHHC---CCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 99999999------9836999---89-----------999998710---3346658999999999859970641
No 3
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=35.65 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=76.0
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH--HHHCCCCEE
Q ss_conf 984320685069976355566650899999844999999189967328999999858999999999999--885697689
Q 004514 472 IMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADY--AKDFNVPFE 549 (747)
Q Consensus 472 ILeA~~g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~--A~~~gVpFe 549 (747)
|++.+.....-.|+|+|-|.| .+...|+.+ ++|.-+|||||.. ...++.+.+||... ++..+++ .
T Consensus 713 LLelL~~~~g~rVLDVGCGTG----~lai~LAr~--g~p~a~VtGVDIS------~emLe~AReRLa~~lnAkr~gl~-n 779 (950)
T 3htx_A 713 ALKHIRESSASTLVDFGCGSG----SLLDSLLDY--PTSLQTIIGVDIS------PKGLARAAKMLHVKLNKEACNVK-S 779 (950)
T ss_dssp HHHHHHHSCCSEEEEETCSSS----HHHHHHTSS--CCCCCEEEEEESC------HHHHHHHHHHHHHHTTTTCSSCS-E
T ss_pred HHHHHCCCCCCEEEEECCCCC----HHHHHHHHH--CCCCCEEEEEECC------HHHHHHHHHHHHHCCCHHHCCCC-C
T ss_conf 999740469898999799878----999999984--8997769999899------99999999875430111323788-5
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHH-HHHHCCCEEEEEEECCCCC
Q ss_conf 9871455343372234456895799972222232211100145617999999-9841885899986338889
Q 004514 550 YNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNF-IRKINPHMFIHGITNGAYN 620 (747)
Q Consensus 550 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~-IR~L~P~Vfv~~e~ng~~n 620 (747)
...+....+.+. ...+..=+|-|..-++|+.+. .+..+|+. .|.|+|.++++...|..+|
T Consensus 780 VefiqGDa~dLp-----~~d~sFDlVV~~eVLeHL~dp------~l~~~L~eI~RvLKPG~LIISTPN~eyN 840 (950)
T 3htx_A 780 ATLYDGSILEFD-----SRLHDVDIGTCLEVIEHMEED------QACEFGEKVLSLFHPKLLIVSTPNYEFN 840 (950)
T ss_dssp EEEEESCTTSCC-----TTSCSCCEEEEESCGGGSCHH------HHHHHHHHHHHTTCCSEEEEEECBGGGH
T ss_pred EEEEECCHHHCC-----CCCCCEEEEEEECCHHHCCHH------HHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 499987667587-----456983499990742307848------9999999999972998799980670122
No 4
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=1.00 E-value=1 Score=34.99 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC----CCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 97899999999873068643155867699984320----68506997635556665089999984499999918996732
Q 004514 443 SAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQ----NSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIE 518 (747)
Q Consensus 443 s~~~~lkAy~lf~~~~Pf~kfa~f~ANqaILeA~~----g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~ 518 (747)
....+...|+.|...+.-.+...-.-.+.+-+.++ .....+|+|+|-|.|.--..++..++.+-.+ -.+.+||||
T Consensus 11 d~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~-~~v~~~~vD 89 (292)
T 2aot_A 11 DHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPG-VCINNEVVE 89 (292)
T ss_dssp CHHHHHHHHHHHHTTBSHHHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTT-CEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 5889999999999831277899999998642677514578999869997677888799999998754898-534479992
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 8999999858999999999999885697689987145534337223-445689579997222223221110014561799
Q 004514 519 FPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEE-LKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNI 597 (747)
Q Consensus 519 ~pq~gfrpae~leetG~RL~~~A~~~gVpFeF~~Ia~~~E~i~~ed-L~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~ 597 (747)
+. .+-++...+++.+....-++.|+|... ..+++.... .....+..=+|.|.+-||++.| + ..
T Consensus 90 ~S------~~ml~~a~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d-------~-~~ 153 (292)
T 2aot_A 90 PS------AEQIAKYKELVAKTSNLENVKFAWHKE--TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD-------I-PA 153 (292)
T ss_dssp SC------HHHHHHHHHHHHTCSSCTTEEEEEECS--CHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC-------H-HH
T ss_pred CC------HHHHHHHHHHHHHCCCCCCCEEEEEEC--CHHHHHHHHCCCCCCCCEEEEEEEEEEEECCC-------H-HH
T ss_conf 99------999999999987466878505999826--65653122014467885549989136552699-------9-99
Q ss_pred HHHHH-HHHCCCEEEEEE
Q ss_conf 99999-841885899986
Q 004514 598 FLNFI-RKINPHMFIHGI 614 (747)
Q Consensus 598 vL~~I-R~L~P~Vfv~~e 614 (747)
+|+.+ |-|+|.-.++..
T Consensus 154 ~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 154 TLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp HHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEE
T ss_conf 999999970889689999
No 5
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=1.00 E-value=1 Score=30.06 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=83.9
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 76999843206850699763555666508999998449999991899673289999998589999999999998856976
Q 004514 468 ANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP 547 (747)
Q Consensus 468 ANqaILeA~~g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVp 547 (747)
....|+++..-...-+|||+|-+.|. ++.+|+.+ =|.+|+|..+.| +.++.+.+++. ... .=.
T Consensus 167 ~~~~~~~~~~~~~~~~v~DvGgG~G~----~~~~l~~~---~p~~~~~~~dlp-------~v~~~a~~~~~-~~~--~~r 229 (353)
T 4a6d_A 167 NGRSVLTAFDLSVFPLMCDLGGGAGA----LAKECMSL---YPGCKITVFDIP-------EVVWTAKQHFS-FQE--EEQ 229 (353)
T ss_dssp HHHHHHHSSCGGGCSEEEEETCTTSH----HHHHHHHH---CSSCEEEEEECH-------HHHHHHHHHSC-C----CCS
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCH----HHHHHHHH---CCCCEEEECCCH-------HHHHHHHHHHH-HCC--CCC
T ss_conf 99999986375568768763898778----99999986---898526752578-------88999998666-403--675
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCEEEE-EEE--CCCCCCCC
Q ss_conf 8998714553433722344568957999722222322111001456179999999-8418858999-863--38889882
Q 004514 548 FEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIH-GIT--NGAYNAPF 623 (747)
Q Consensus 548 FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~-~e~--ng~~n~p~ 623 (747)
.+|.+-. -++ + .+. ++=+|-+..-||+..|+.. ..+|+.| +.|+|.--++ .+. +.+...|.
T Consensus 230 v~~~~gD-~~~-----~-~~~--~~D~~~~~~vlh~~~d~~~------~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~ 294 (353)
T 4a6d_A 230 IDFQEGD-FFK-----D-PLP--EADLYILARVLHDWADGKC------SHLLERIYHTCKPGGGILVIESLLDEDRRGPL 294 (353)
T ss_dssp EEEEESC-TTT-----S-CCC--CCSEEEEESSGGGSCHHHH------HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCH
T ss_pred EEEECCC-CCC-----C-CCC--CCEEEEEEEECCCCCHHHH------HHHHHHHHHHCCCCCEEEEEEEEECCCCCCCH
T ss_conf 3663375-245-----7-777--7418986201015998999------99999999507999889999850089999977
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 47889999987899868764208999999999999999997857564148866556303456999998289920259
Q 004514 624 FVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPL 700 (747)
Q Consensus 624 F~~RF~EAL~yYSAlFDsLDa~~pr~~~eR~~iEr~~lgreI~NVVAcEG~eRvER~Ety~qWq~R~~rAGF~~lpL 700 (747)
+ .++||. .=.+.+.|.+| |.++|+..+..|||+.+.+
T Consensus 295 ~-----------~~~~dl------------------------~ml~~~~g~er-----t~~e~~~ll~~AGf~~v~v 331 (353)
T 4a6d_A 295 L-----------TQLYSL------------------------NMLVQTEGQER-----TPTHYHMLLSSAGFRDFQF 331 (353)
T ss_dssp H-----------HHHHHH------------------------HHHHSSSCCCC-----CHHHHHHHHHHHTCEEEEE
T ss_pred H-----------HHHHHH------------------------HHHHHCCCCCC-----CHHHHHHHHHHCCCCEEEE
T ss_conf 8-----------999989------------------------99872899078-----9999999999779945899
No 6
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=1.00 E-value=1 Score=29.45 Aligned_cols=166 Identities=9% Similarity=-0.026 Sum_probs=79.7
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CEE
Q ss_conf 984320685069976355566650899999844999999189967328999999858999999999999885697--689
Q 004514 472 IMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNV--PFE 549 (747)
Q Consensus 472 ILeA~~g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gV--pFe 549 (747)
+++.+.....-+|+|+|-+.|.- ...|+.+- |.+++|++|.| ..++...+++ +..++ ..+
T Consensus 171 ~l~~~~~~~~~~vlDvG~G~G~~----~~~l~~~~---p~~~~~~~D~~-------~~~~~a~~~~----~~~~~~~~v~ 232 (363)
T 3dp7_A 171 ALEIVFSHHPKRLLDIGGNTGKW----ATQCVQYN---KEVEVTIVDLP-------QQLEMMRKQT----AGLSGSERIH 232 (363)
T ss_dssp HHHHHGGGCCSEEEEESCTTCHH----HHHHHHHS---TTCEEEEEECH-------HHHHHHHHHH----TTCTTGGGEE
T ss_pred HHHHHCCCCCCEEEEECCCCCHH----HHHHHHHC---CCCEEEEEECH-------HHHHHHHHHH----HHCCCCCCEE
T ss_conf 99874136899899938976899----99999859---99879998688-------8999999989----8558556438
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCEEEE-EEECCCCCCCCHHHH
Q ss_conf 98714553433722344568957999722222322111001456179999999-8418858999-863388898824788
Q 004514 550 YNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIH-GITNGAYNAPFFVTR 627 (747)
Q Consensus 550 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~-~e~ng~~n~p~F~~R 627 (747)
|..- ...+.. +-+. +.+=+|-+..-||++.|+. ...+|+.+ +.|+|.-.++ .+...... +. ...
T Consensus 233 ~~~~--d~~~~~---~~~p-~~~D~v~~~~vlh~~~~~~------~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~-~~~ 298 (363)
T 3dp7_A 233 GHGA--NLLDRD---VPFP-TGFDAVWMSQFLDCFSEEE------VISILTRVAQSIGKDSKVYIMETLWDRQ-RY-ETA 298 (363)
T ss_dssp EEEC--CCCSSS---CCCC-CCCSEEEEESCSTTSCHHH------HHHHHHHHHHHCCTTCEEEEEECCTTSC-SS-HHH
T ss_pred EEEC--CCCCCC---CCCC-CCCCEEEEECHHHHCCHHH------HHHHHHHHHHHCCCCCEEEEEEECCCCC-CC-CCH
T ss_conf 9973--612467---7899-9847899833134399899------9999999999609896899986056876-44-312
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999878998687642089999999999999999978575641488665563034569999982899202599
Q 004514 628 FREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLD 701 (747)
Q Consensus 628 F~EAL~yYSAlFDsLDa~~pr~~~eR~~iEr~~lgreI~NVVAcEG~eRvER~Ety~qWq~R~~rAGF~~lpLs 701 (747)
. .+........ .+. ..+.. .+| +.++|+..+..|||+.+...
T Consensus 299 ~---------------------------~~~~~~~~~~-~~~-~~~~~-~~~--t~~e~~~ll~~AGf~~v~~~ 340 (363)
T 3dp7_A 299 S---------------------------YCLTQISLYF-TAM-ANGNS-KMF--HSDDLIRCIENAGLEVEEIQ 340 (363)
T ss_dssp H---------------------------HHHHHHHHHH-HHS-SCSSC-CSC--CHHHHHHHHHTTTEEESCCC
T ss_pred H---------------------------HHHHHHHHHH-HHH-HCCCC-CCC--CHHHHHHHHHHCCCEEEEEE
T ss_conf 2---------------------------5788740567-764-07887-636--99999999998699289999
No 7
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=1.00 E-value=1 Score=29.28 Aligned_cols=110 Identities=9% Similarity=0.130 Sum_probs=62.4
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEE
Q ss_conf 9843206850699763555666508999998449999991899673289999998589999999999998856976-899
Q 004514 472 IMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEY 550 (747)
Q Consensus 472 ILeA~~g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVp-FeF 550 (747)
|++.+.-...-+|+|+|-+.|. +...|+.+- + ++||||.. .+.++...+++ +..+++ .+|
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~~--~---~v~gvD~s------~~~l~~a~~~~----~~~~~~~v~~ 89 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGH----VANAFAPFV--K---KVVAFDLT------EDILKVARAFI----EGNGHQQVEY 89 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCH----HHHHHGGGS--S---EEEEEESC------HHHHHHHHHHH----HHTTCCSEEE
T ss_pred HHHHHCCCCCCEEEEEECCCCH----HHHHHHHHC--C---EEEEEECC------HHHHHHHHHHH----HHCCCCCEEE
T ss_conf 9997188889979998278898----999999758--9---79999099------99999999999----8659996499
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8714553433722344568957999722222322111001456179999999841885899986
Q 004514 551 NAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGI 614 (747)
Q Consensus 551 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~e 614 (747)
.. ...+. +....+..=+|-|.+.||++.| +...+-...|.|+|.-.+...
T Consensus 90 ~~--~d~~~-----l~~~~~~fD~V~~~~~l~~~~d-------~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 90 VQ--GDAEQ-----MPFTDERFHIVTCRIAAHHFPN-------PASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp EE--CCC-C-----CCSCTTCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred EE--ECHHH-----CCCCCCCEEEEEEHHHHHHCCC-------HHHHHHHHHHHCCCCCEEEEE
T ss_conf 99--05776-----9999997789988435672689-------999999999986779789999
No 8
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=1.00 E-value=1 Score=28.27 Aligned_cols=124 Identities=12% Similarity=0.127 Sum_probs=62.3
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99843206850699763555666508999998449999991899673289999998589999999999998856976899
Q 004514 471 TIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550 (747)
Q Consensus 471 aILeA~~g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVpFeF 550 (747)
.+++.+.-...-.|+|+|-+.|.-.. .|+. + ..++||||.. ...++...+++ -++.|..
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~----~l~~-~----~~~v~gvD~s------~~~~~~a~~~~------~~~~~~~ 106 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTE----KIAQ-S----GAEVLGTDNA------ATMIEKARQNY------PHLHFDV 106 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHH----HHHH-T----TCEEEEEESC------HHHHHHHHHHC------TTSCEEE
T ss_pred HHHHHHCCCCCCEEEEECCCCCHHHH----HHHH-C----CCEEEEEECC------HHHHHHHHHHC------CCCEEEE
T ss_conf 99997378899989996388988999----9986-8----9959999899------99999998518------8987997
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHH
Q ss_conf 87145534337223445689579997222223221110014561799999998418858999863388898824788999
Q 004514 551 NAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFRE 630 (747)
Q Consensus 551 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~e~ng~~n~p~F~~RF~E 630 (747)
...+. +.. ++..=+|-|..-|+++.| +...+-...|.|+|...++....+..+.+.+...+.+
T Consensus 107 ----~d~~~-----~~~-~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 169 (279)
T 3ccf_A 107 ----ADARN-----FRV-DKPLDAVFSNAMLHWVKE-------PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYN 169 (279)
T ss_dssp ----CCTTT-----CCC-SSCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHH
T ss_pred ----CCHHH-----CCC-CCCCCEEEECCHHHHCCC-------HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf ----88556-----886-787378987252552757-------9999999998638994899996687652779999999
Q ss_pred HH
Q ss_conf 99
Q 004514 631 AL 632 (747)
Q Consensus 631 AL 632 (747)
.+
T Consensus 170 ~~ 171 (279)
T 3ccf_A 170 AL 171 (279)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 9
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=28.14 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCC
Q ss_conf 850699763555666508999998449999991899673289999998589999999999998856976-8998714553
Q 004514 479 SMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP-FEYNAIAKRW 557 (747)
Q Consensus 479 ~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVp-FeF~~Ia~~~ 557 (747)
...-+|+|+|-+.|. +...|+.+ .|..++||||.. ...++...+++ ...+++ .+|.. ...
T Consensus 36 ~~~~~vLDiG~G~G~----~~~~l~~~---~~~~~v~~vD~s------~~~~~~a~~~~----~~~~~~~~~~~~--~d~ 96 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGA----QTVILAKN---NPDAEITSIDIS------PESLEKARENT----EKNGIKNVKFLQ--ANI 96 (276)
T ss_dssp CTTCEEEETTCTTSH----HHHHHHHH---CTTSEEEEEESC------HHHHHHHHHHH----HHTTCCSEEEEE--CCG
T ss_pred CCCCEEEEECCCCCH----HHHHHHHH---CCCCEEEEEECC------HHHHHHHHHHH----HHCCCCCCEEEE--CCC
T ss_conf 999969995688889----99999985---899879999899------99999999999----975998718998--466
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCEEEEEE
Q ss_conf 433722344568957999722222322111001456179999999-841885899986
Q 004514 558 DTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIHGI 614 (747)
Q Consensus 558 E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~~e 614 (747)
+. +....+..=+|.|..-|+++.| + ..+|+.+ +.|+|.-.++..
T Consensus 97 ~~-----~~~~~~~fD~v~~~~~l~~~~~-------~-~~~l~~~~~~L~pgG~l~~~ 141 (276)
T 3mgg_A 97 FS-----LPFEDSSFDHIFVCFVLEHLQS-------P-EEALKSLKKVLKPGGTITVI 141 (276)
T ss_dssp GG-----CCSCTTCEEEEEEESCGGGCSC-------H-HHHHHHHHHHEEEEEEEEEE
T ss_pred CC-----CCCCCCCEEEEEEECHHHHCCC-------H-HHHHHHHHHHCCCCCEEEEE
T ss_conf 66-----8888897559999061440289-------9-99999999874879689999
No 10
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=1.00 E-value=1 Score=28.05 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 76999843206850699763555666508999998449999991899673289999998589999999999998856976
Q 004514 468 ANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVP 547 (747)
Q Consensus 468 ANqaILeA~~g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVp 547 (747)
....|++.+..... +|+|+|-+.|. +...|+.+ |..++||||.. ...++...+++. ..++.
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~----~~~~l~~~----~~~~v~~~D~s------~~~~~~a~~~~~----~~~~~ 92 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGA----LSIALAKQ----SDFSIRALDFS------KHMNEIALKNIA----DANLN 92 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSH----HHHHHHHH----SEEEEEEEESC------HHHHHHHHHHHH----HTTCT
T ss_pred HHHHHHHHCCCCCC-EEEEECCCCCH----HHHHHHHC----CCCEEEEEECC------HHHHHHHHHHHH----HCCCC
T ss_conf 99999996089999-79997898878----89999975----79839999899------999999999987----50646
Q ss_pred --EEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHH-HHHHCCCEEEEE
Q ss_conf --899871455343372234456895799972222232211100145617999999-984188589998
Q 004514 548 --FEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNF-IRKINPHMFIHG 613 (747)
Q Consensus 548 --FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~-IR~L~P~Vfv~~ 613 (747)
.+|.. ..+++ +....+..=+|-|..-|+++.+ + ..+|+. .+.|+|.-.++.
T Consensus 93 ~~~~~~~--~d~~~-----~~~~~~~~D~v~~~~~l~~~~~-------~-~~~l~~~~~~L~pgG~l~~ 146 (219)
T 3dlc_A 93 DRIQIVQ--GDVHN-----IPIEDNYADLIVSRGSVFFWED-------V-ATAFREIYRILKSGGKTYI 146 (219)
T ss_dssp TTEEEEE--CBTTB-----CSSCTTCEEEEEEESCGGGCSC-------H-HHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEE--CCHHH-----CCCCCCCCCEEEECCHHHHCCC-------H-HHHHHHHHHHCCCCCEEEE
T ss_conf 7639998--18898-----7988666338998763763368-------9-9999999976789978999
Done!