BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004516
(747 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68CZ1|FTM_HUMAN Protein fantom OS=Homo sapiens GN=RPGRIP1L PE=1 SV=2
Length = 1315
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 156/299 (52%), Gaps = 30/299 (10%)
Query: 30 RSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVK-IRLLDQRAKEIESK---EIEL 85
R+ N + GQ ++LE ++ K L ++ N++++ ++L +Q+A + S +E+
Sbjct: 209 RNLENVIQSQRGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEM 268
Query: 86 VLVGKK-IEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEE---- 140
+ + K+ +E N A + K + L +K +R L++ + L + LN++ +E
Sbjct: 269 IKLHKQLVEKSNALSAMEGKFIQLQEK-----QRTLRISHDALMANGDELNMQLKEQRLK 323
Query: 141 LCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSI--EEHEKQLAFKES 198
CS++ ++ + +++ ++ L++ I + E EL ++ ++ S HE+Q KE
Sbjct: 324 CCSLEKQLHSMKFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQ 383
Query: 199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHS 258
+ ++ I + E LK D K+ IL K E ++ E +L Q + +EL +++
Sbjct: 384 Q---LKVQIAQLETALKS-----DLTDKTEILDRLKTERDQNE-KLVQEN-RELQLQYLE 433
Query: 259 EQEKLELLQGRVRLH--ENEVES--LEQELDSMRKQQKKYFDDVELKKRELNEIGKYIE 313
++++L+ L+ R++L+ EN++ + L + L ++ Q+++ D+ + +EI K +E
Sbjct: 434 QKQQLDELKKRIKLYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLE 492
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=rad50 PE=3 SV=1
Length = 876
Score = 36.2 bits (82), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 21/220 (9%)
Query: 240 KELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRK---------Q 290
KELE +KE + + + E L+G +RL EN++ESL+ D +RK +
Sbjct: 216 KELEPEVEELKERLNELREAKREFERLEGELRLLENKIESLKGRRDDLRKLVEEGKEAER 275
Query: 291 QKKYFDDVELKKRELN----EIGKYIEELNQ---DPASKDKELKFVQQSIKECSKEF-QW 342
+ + DV K REL E+ + IEEL D S L+ ++ ++ +E +
Sbjct: 276 ELQRLGDVPSKVRELENEEAELRRRIEELRNLLDDLRSLRNRLESAEEELEGVKRELEEL 335
Query: 343 KKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIG-YLKELKEKEKHFDSLKK 401
K E + E+ + K VE + +L + E + + L EL ++E+ S +
Sbjct: 336 KDEAGVDPERLVEFKDKIVEASERLRDLRREEELKRKLEKVSDELSELGDREETLQSEYE 395
Query: 402 GLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDC 441
L++RL +++ + +E RVKE EL E+ S+R+A +C
Sbjct: 396 ELQERLDEIQGELKEI--RVKEKELLER-IESLREAEGEC 432
>sp|Q58718|RAD50_METJA DNA double-strand break repair Rad50 ATPase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rad50 PE=1 SV=1
Length = 1005
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 27/188 (14%)
Query: 54 KKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRI 113
KKS+EK ND++ +I L + K I+ + IE L K+IE+ KKK L +QK
Sbjct: 421 KKSIEKNINDLETRINKLLEETKNIDIESIENSL--KEIEE-------KKKVLENLQKE- 470
Query: 114 GECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQA---NQKELQLL---KNLIKE 167
K EL K E+NS L +EL V+G C+ K+++L+ K +
Sbjct: 471 ---KIELNKKLGEINSEIKRLKKILDELKEVEGKCPLCKTPIDENKKMELINQHKTQLNN 527
Query: 168 CCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTL-------IEEYEEVLKDKERP 220
E+E KK+ E+++ IE+ +K++ KE + +++TL IEE E LK+ +
Sbjct: 528 KYTELEEINKKIREIEKDIEKLKKEID-KEENLKTLKTLYLEKQSQIEELELKLKNYKEQ 586
Query: 221 YDEVKKSL 228
DE+ K +
Sbjct: 587 LDEINKKI 594
>sp|Q640L5|CCD18_MOUSE Coiled-coil domain-containing protein 18 OS=Mus musculus GN=Ccdc18
PE=2 SV=1
Length = 1455
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 235 LESEKKELELTQSSIKEL-WMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKK 293
L+ K ELE T +S+KEL ++ H+E E E +Q R L ENE+++ EL S +Q ++
Sbjct: 909 LDQTKTELEKTTNSVKELERLQHHTETELTETMQKREAL-ENELQNAHGELKSTLRQLQE 967
Query: 294 YFD-------DVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEE 346
D +E K + ++ + E + K +EL + Q++KE + E + + +
Sbjct: 968 LRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQ 1027
Query: 347 SISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDR 406
+ TI E E+E K + T +S L ELKE K +SL + L++
Sbjct: 1028 VTHLDMTIREHRGEMEQKIIKLEGTLEKSEL----------ELKECNKQVESLNEKLQNA 1077
Query: 407 LQDLEIKEREF------------EKRVKEFELREKEFGSIRKAVED 440
+ L +E+EF +K ++ + R KE S+ K ED
Sbjct: 1078 KEQL--REKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQED 1121
>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair Rad50 ATPase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rad50 PE=3 SV=1
Length = 880
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 171/351 (48%), Gaps = 68/351 (19%)
Query: 124 ENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIE-LR------E 176
E+EL +N +L ++G + K + N KEL+ +K I E ++E L+ E
Sbjct: 203 EDELTKKLSEINEISSKLPPIRGELEKVRENVKELESIKGKISELKIQVEKLKGRKKGLE 262
Query: 177 KKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLE 236
+K+ +++RSIEE K++KIS + ++++ + L++KE+ Y ++K E+KL
Sbjct: 263 EKIVQIERSIEE-------KKAKISELEEIVKDIPK-LQEKEKEYRKLKGFRDEYESKLR 314
Query: 237 SEKKELELTQS---SIKELWMKFHSEQEKLELLQGRVRLHENEVESLE---QELDSMRKQ 290
+KEL +S +I+E+ + ++E+ E ++ ++ E +E L+ +EL+ ++
Sbjct: 315 RLEKELSKWESELKAIEEVIKEGEKKKERAEEIREKLSEIEKRLEELKPYVEELEDAKQV 374
Query: 291 QKKYFDDVELKKRELNEI--GKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESI 348
QK+ +E K L + G+ IE+L S +KE ++++IKE + ++E
Sbjct: 375 QKQ----IERLKARLKGLSPGEVIEKLE----SLEKERTEIEEAIKEITTRIGQMEQEKN 426
Query: 349 STEKTIAE----------CSKE--------------VELKKNQFNL---TQHESNL---- 377
K I E C +E +E+KK + L T+ E L
Sbjct: 427 ERMKAIEELRKAKGKCPVCGRELTEEHKKELMERYTLEIKKIEEELKRTTEEERKLRVNL 486
Query: 378 ----FQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEF 424
+ R ++++ E+ K +S KG L++LE KEREFE +EF
Sbjct: 487 RKLEIKLREFSVMRDIAEQIKELESKLKGF--NLEELEQKEREFEGLNEEF 535
>sp|Q6P5D4|CP135_MOUSE Centrosomal protein of 135 kDa OS=Mus musculus GN=Cep135 PE=1 SV=1
Length = 1140
Score = 33.1 bits (74), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 114/235 (48%), Gaps = 29/235 (12%)
Query: 11 ELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE---EHLDLTKKSLEKQSNDVDVK 67
ELR ++KEALR + + N+V G+ DLE EHL LE + ++ K
Sbjct: 577 ELRRITAEKEALREKLKNIQ-ERNAV----GK-SDLEKTIEHLTYINHQLENEKYELQSK 630
Query: 68 IRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELG-------LVQKRIGECKREL 120
+ ++ + + +E+K L +K+ G+ + +K E+ +Q+ + +C+ L
Sbjct: 631 MLMMKETVESLENKS---KLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRL 687
Query: 121 QLKENELNSLSGSLNLKKEELCSVQGWIN----KCQANQKELQLL---KNLIKECCDEIE 173
+K EL S + + +++L ++ + + A +K + ++ K+ ++E DE
Sbjct: 688 SIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDE-- 745
Query: 174 LREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228
+ +K+ +Q S+ EK +A + ++ T + + +E L ++R + +++ L
Sbjct: 746 -KTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQL 799
>sp|O54874|MRCKA_RAT Serine/threonine-protein kinase MRCK alpha OS=Rattus norvegicus
GN=Cdc42bpa PE=1 SV=1
Length = 1732
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 134/270 (49%), Gaps = 35/270 (12%)
Query: 165 IKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEV 224
IK +EIE K+V EV ++ E+ + + + R I+ +E+ +K ++ +E+
Sbjct: 489 IKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQ-IKAFEKQIKTLQQEREEL 547
Query: 225 KKSLILCETKLESEKKELELTQSS----------IKELWMKFHSEQEKLELLQGRVRLHE 274
K L+ +L+++ KEL+ I E + H++++K L VR E
Sbjct: 548 NKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQKQK---LARHVRDKE 604
Query: 275 NEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQS-- 332
EV+ + Q+ +S+R++ ++ E K+EL + E L + ASKD++L+ +QS
Sbjct: 605 EEVDLVMQKAESLRQELRR----AERAKKELE---VHTEALIAE-ASKDRKLR--EQSRH 654
Query: 333 -IKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKE 391
K+ E + K++ IS I CS E +Q +T+ +++L + ++I Y +E+ +
Sbjct: 655 YSKQLENELEGLKQKQISYSPGI--CSIE-----HQQEITKLKTDL-EKKSIFYEEEISK 706
Query: 392 KEKHFDSLKKGLEDRLQDLEIKEREFEKRV 421
+E S K L+ L D E ++ K +
Sbjct: 707 REGIHASEIKNLKKELHDSEGQQLALNKEI 736
>sp|O15083|ERC2_HUMAN ERC protein 2 OS=Homo sapiens GN=ERC2 PE=1 SV=3
Length = 957
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 71 LDQRAKEIESKEIELVLVGKKIE-------DCNGE-------LACKKKELGLVQKRIGEC 116
+DQ +E+ KE EL+ + K+E DC L K++ ++Q +
Sbjct: 436 IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 495
Query: 117 KRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELRE 176
+ L+ KE+ LN + L EE ++ G I ++ D +E++E
Sbjct: 496 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI-----------------RDMKDMLEVKE 538
Query: 177 KKVGEVQRSIEEHEKQLAFKESKISSMR--------------TLIEEYEEVLKDKERPYD 222
+K+ +Q+ IE ++QL K+ ++++++ T + EE L +KER +
Sbjct: 539 RKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIE 598
Query: 223 EVK 225
+K
Sbjct: 599 RLK 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,695,512
Number of Sequences: 539616
Number of extensions: 11499143
Number of successful extensions: 75031
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 3239
Number of HSP's that attempted gapping in prelim test: 49806
Number of HSP's gapped (non-prelim): 13031
length of query: 747
length of database: 191,569,459
effective HSP length: 125
effective length of query: 622
effective length of database: 124,117,459
effective search space: 77201059498
effective search space used: 77201059498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)