Query 004516
Match_columns 747
No_of_seqs 316 out of 375
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 1.1E-62 2.4E-67 521.5 12.1 226 450-676 13-245 (290)
2 KOG0996 Structural maintenance 99.8 2.4E-17 5.2E-22 193.8 41.4 347 248-654 388-752 (1293)
3 PRK03918 chromosome segregatio 99.5 7.5E-10 1.6E-14 135.6 49.8 52 173-236 432-483 (880)
4 PRK02224 chromosome segregatio 99.5 2.2E-09 4.8E-14 131.6 47.5 35 156-190 429-465 (880)
5 PRK01156 chromosome segregatio 99.4 1.2E-08 2.5E-13 125.6 51.1 95 175-281 451-549 (895)
6 PRK02224 chromosome segregatio 99.4 2.2E-07 4.7E-12 114.2 55.6 21 12-32 208-228 (880)
7 PRK03918 chromosome segregatio 99.3 7.5E-07 1.6E-11 109.4 57.8 17 13-29 172-188 (880)
8 KOG0161 Myosin class II heavy 99.2 6.9E-06 1.5E-10 105.2 57.2 105 204-308 1040-1144(1930)
9 KOG0161 Myosin class II heavy 99.2 1.7E-05 3.6E-10 101.8 57.7 83 162-244 1061-1143(1930)
10 TIGR02169 SMC_prok_A chromosom 99.1 2.8E-06 6.1E-11 106.8 48.5 9 548-556 561-569 (1164)
11 TIGR02168 SMC_prok_B chromosom 99.1 4.4E-06 9.6E-11 104.9 49.9 89 11-102 671-759 (1179)
12 TIGR00606 rad50 rad50. This fa 99.1 1.3E-05 2.9E-10 102.5 54.4 65 582-647 1235-1308(1311)
13 COG1196 Smc Chromosome segrega 99.1 3.4E-06 7.4E-11 106.6 48.0 227 349-618 387-623 (1163)
14 KOG0933 Structural maintenance 99.0 0.00018 4E-09 85.7 56.0 47 548-594 1071-1119(1174)
15 TIGR00606 rad50 rad50. This fa 99.0 4.3E-05 9.2E-10 97.9 54.8 48 366-413 977-1024(1311)
16 PF10174 Cast: RIM-binding pro 99.0 0.00018 4E-09 86.3 55.3 24 192-215 232-255 (775)
17 TIGR02169 SMC_prok_A chromosom 99.0 1.6E-05 3.4E-10 100.2 49.2 30 373-402 979-1008(1164)
18 PF10174 Cast: RIM-binding pro 99.0 0.00012 2.5E-09 88.0 52.7 75 345-419 465-539 (775)
19 KOG0250 DNA repair protein RAD 98.9 0.00035 7.7E-09 84.6 52.2 150 67-226 272-422 (1074)
20 KOG4674 Uncharacterized conser 98.8 0.0012 2.6E-08 84.1 54.8 91 334-424 394-484 (1822)
21 COG1196 Smc Chromosome segrega 98.8 0.00015 3.3E-09 91.9 47.8 89 39-127 686-774 (1163)
22 KOG4674 Uncharacterized conser 98.8 0.0021 4.6E-08 82.0 55.3 224 192-425 838-1077(1822)
23 COG0419 SbcC ATPase involved i 98.8 0.0012 2.7E-08 81.8 52.9 16 175-190 456-471 (908)
24 KOG0996 Structural maintenance 98.7 0.0021 4.6E-08 78.2 52.7 58 356-413 904-961 (1293)
25 KOG0933 Structural maintenance 98.6 0.00054 1.2E-08 81.9 40.4 75 166-240 811-885 (1174)
26 PF05701 WEMBL: Weak chloropla 98.6 0.004 8.7E-08 72.6 51.2 24 205-228 211-234 (522)
27 KOG4643 Uncharacterized coiled 98.5 0.0078 1.7E-07 72.3 44.7 201 192-403 395-601 (1195)
28 PF00261 Tropomyosin: Tropomyo 98.5 0.00027 5.8E-09 74.2 29.5 63 278-340 172-234 (237)
29 KOG0250 DNA repair protein RAD 98.5 0.012 2.6E-07 71.9 52.3 73 361-433 736-808 (1074)
30 PF05701 WEMBL: Weak chloropla 98.4 0.014 3E-07 68.2 50.5 15 130-144 114-128 (522)
31 PF07888 CALCOCO1: Calcium bin 98.3 0.013 2.8E-07 67.7 41.9 96 8-106 141-236 (546)
32 PF05483 SCP-1: Synaptonemal c 98.3 0.014 3E-07 67.9 55.8 153 271-426 495-647 (786)
33 PF07888 CALCOCO1: Calcium bin 98.2 0.027 5.9E-07 65.1 43.4 12 528-539 526-537 (546)
34 PF00261 Tropomyosin: Tropomyo 98.2 0.0039 8.5E-08 65.5 30.1 57 266-322 174-230 (237)
35 KOG0964 Structural maintenance 98.1 0.046 1E-06 65.9 47.0 49 202-250 394-442 (1200)
36 PRK04778 septation ring format 98.1 0.042 9E-07 65.0 44.7 32 374-405 477-508 (569)
37 KOG0995 Centromere-associated 98.1 0.03 6.6E-07 64.3 37.0 64 50-113 261-324 (581)
38 PF12128 DUF3584: Protein of u 98.1 0.094 2E-06 67.3 59.0 25 528-552 968-993 (1201)
39 PF12128 DUF3584: Protein of u 98.1 0.095 2.1E-06 67.2 67.1 58 10-67 281-339 (1201)
40 PF00038 Filament: Intermediat 98.0 0.04 8.7E-07 59.8 37.2 130 10-141 18-147 (312)
41 KOG0612 Rho-associated, coiled 98.0 0.12 2.6E-06 63.9 40.9 13 688-700 1173-1185(1317)
42 KOG0976 Rho/Rac1-interacting s 97.9 0.11 2.4E-06 61.4 46.5 41 271-311 319-359 (1265)
43 PHA02562 46 endonuclease subun 97.9 0.0047 1E-07 72.3 27.1 14 176-189 284-297 (562)
44 PRK04863 mukB cell division pr 97.8 0.32 6.9E-06 63.2 44.3 17 332-348 583-599 (1486)
45 PF01576 Myosin_tail_1: Myosin 97.8 5.4E-06 1.2E-10 101.4 0.0 41 385-425 579-619 (859)
46 COG1340 Uncharacterized archae 97.7 0.096 2.1E-06 56.3 34.0 51 10-63 6-56 (294)
47 PHA02562 46 endonuclease subun 97.7 0.012 2.7E-07 68.8 27.2 36 199-234 338-373 (562)
48 KOG0976 Rho/Rac1-interacting s 97.7 0.25 5.4E-06 58.6 47.8 118 21-141 89-206 (1265)
49 PF05483 SCP-1: Synaptonemal c 97.7 0.23 5.1E-06 58.2 52.7 59 266-324 504-562 (786)
50 KOG0995 Centromere-associated 97.7 0.21 4.6E-06 57.6 43.7 55 90-144 259-313 (581)
51 KOG0018 Structural maintenance 97.6 0.18 4E-06 61.7 34.9 34 15-51 158-191 (1141)
52 PF01576 Myosin_tail_1: Myosin 97.6 1.1E-05 2.5E-10 98.6 0.0 40 270-309 372-411 (859)
53 COG1340 Uncharacterized archae 97.6 0.15 3.2E-06 54.8 34.0 14 173-186 141-154 (294)
54 KOG0971 Microtubule-associated 97.6 0.33 7.1E-06 58.4 39.0 8 637-644 892-899 (1243)
55 COG0419 SbcC ATPase involved i 97.6 0.44 9.5E-06 59.6 57.2 32 584-618 855-886 (908)
56 PRK04778 septation ring format 97.5 0.37 8E-06 57.1 50.0 47 61-107 111-157 (569)
57 PRK11637 AmiB activator; Provi 97.5 0.08 1.7E-06 60.4 28.6 16 270-285 235-250 (428)
58 PF06160 EzrA: Septation ring 97.4 0.46 1E-05 56.2 41.0 51 91-141 109-159 (560)
59 PRK11637 AmiB activator; Provi 97.3 0.14 3.1E-06 58.3 28.2 38 104-141 89-126 (428)
60 KOG0964 Structural maintenance 97.3 0.75 1.6E-05 56.0 55.8 94 6-99 268-365 (1200)
61 KOG0971 Microtubule-associated 97.3 0.76 1.6E-05 55.5 38.6 36 162-197 395-430 (1243)
62 KOG0977 Nuclear envelope prote 97.3 0.62 1.3E-05 54.3 36.6 37 158-194 157-193 (546)
63 KOG0018 Structural maintenance 97.3 0.89 1.9E-05 56.0 49.1 188 246-434 661-889 (1141)
64 PF00038 Filament: Intermediat 97.3 0.42 9.2E-06 51.9 41.2 33 24-59 4-36 (312)
65 KOG0612 Rho-associated, coiled 97.2 1.3 2.7E-05 55.4 41.1 6 553-558 1122-1127(1317)
66 PF05667 DUF812: Protein of un 97.2 0.82 1.8E-05 54.3 32.3 47 265-311 488-534 (594)
67 COG1579 Zn-ribbon protein, pos 97.1 0.045 9.9E-07 57.4 19.1 36 21-59 14-49 (239)
68 PF09726 Macoilin: Transmembra 97.1 0.17 3.8E-06 60.9 26.3 27 161-187 550-576 (697)
69 KOG0994 Extracellular matrix g 97.0 1.7 3.8E-05 53.7 36.7 38 199-236 1592-1629(1758)
70 KOG1029 Endocytic adaptor prot 97.0 1.4 3E-05 52.5 35.7 10 548-557 780-789 (1118)
71 KOG4643 Uncharacterized coiled 97.0 1.7 3.7E-05 53.3 47.4 18 481-498 773-790 (1195)
72 PF05557 MAD: Mitotic checkpoi 96.9 0.0013 2.9E-08 79.5 6.1 23 609-631 687-709 (722)
73 COG4942 Membrane-bound metallo 96.6 1.5 3.3E-05 49.5 27.0 52 72-123 55-106 (420)
74 PF05667 DUF812: Protein of un 96.6 2.5 5.5E-05 50.3 32.7 19 198-216 461-479 (594)
75 KOG0994 Extracellular matrix g 96.6 3.3 7.1E-05 51.5 38.1 29 361-389 1719-1747(1758)
76 KOG0962 DNA repair protein RAD 96.5 4 8.6E-05 51.9 45.0 140 80-220 571-720 (1294)
77 PRK04863 mukB cell division pr 96.5 4.8 0.0001 52.8 55.2 28 12-39 232-259 (1486)
78 PF09726 Macoilin: Transmembra 96.5 1.4 3.1E-05 53.2 27.6 33 220-252 623-655 (697)
79 PF05622 HOOK: HOOK protein; 96.4 0.00081 1.8E-08 81.3 0.0 32 183-214 362-393 (713)
80 PF05557 MAD: Mitotic checkpoi 96.4 0.0041 8.9E-08 75.4 6.0 30 453-484 548-577 (722)
81 KOG0977 Nuclear envelope prote 96.4 2.9 6.3E-05 48.9 32.4 116 23-141 41-178 (546)
82 KOG0962 DNA repair protein RAD 96.4 4.9 0.00011 51.2 48.7 53 6-58 240-292 (1294)
83 KOG1029 Endocytic adaptor prot 96.2 4 8.7E-05 48.9 34.0 49 204-252 450-498 (1118)
84 PF12718 Tropomyosin_1: Tropom 96.2 0.52 1.1E-05 45.9 18.0 127 13-142 10-139 (143)
85 PF05622 HOOK: HOOK protein; 96.1 0.0015 3.2E-08 79.0 0.0 6 466-471 688-693 (713)
86 TIGR03185 DNA_S_dndD DNA sulfu 96.1 5 0.00011 48.4 38.2 18 396-413 504-521 (650)
87 KOG0963 Transcription factor/C 96.1 4.3 9.4E-05 47.7 30.3 40 8-47 119-158 (629)
88 PF15619 Lebercilin: Ciliary p 96.1 2 4.4E-05 43.9 22.4 25 8-32 17-41 (194)
89 TIGR03185 DNA_S_dndD DNA sulfu 96.1 5.1 0.00011 48.3 39.9 47 75-121 208-254 (650)
90 PF12718 Tropomyosin_1: Tropom 96.0 0.75 1.6E-05 44.8 18.3 46 75-120 13-58 (143)
91 KOG0978 E3 ubiquitin ligase in 96.0 5.3 0.00011 48.1 47.2 75 5-86 229-303 (698)
92 PF06160 EzrA: Septation ring 95.9 5.3 0.00012 47.4 51.3 16 176-191 221-236 (560)
93 PRK09039 hypothetical protein; 95.9 0.91 2E-05 50.5 20.7 19 10-28 46-64 (343)
94 KOG0963 Transcription factor/C 95.7 6.1 0.00013 46.5 39.6 66 169-244 195-260 (629)
95 KOG0946 ER-Golgi vesicle-tethe 95.7 7.2 0.00016 47.2 29.2 34 286-319 908-941 (970)
96 COG4942 Membrane-bound metallo 95.6 5.3 0.00011 45.3 29.7 63 72-134 41-103 (420)
97 KOG0946 ER-Golgi vesicle-tethe 95.5 2.1 4.5E-05 51.5 22.0 26 195-220 859-884 (970)
98 COG4372 Uncharacterized protei 95.3 6.1 0.00013 44.0 27.4 13 702-714 483-495 (499)
99 KOG1003 Actin filament-coating 95.2 4.2 9.2E-05 41.4 25.6 46 266-311 142-187 (205)
100 KOG4809 Rab6 GTPase-interactin 95.0 9.1 0.0002 44.4 38.6 48 75-122 235-282 (654)
101 PF09730 BicD: Microtubule-ass 95.0 12 0.00026 45.5 44.8 46 266-311 270-315 (717)
102 PF15619 Lebercilin: Ciliary p 94.9 5.4 0.00012 40.9 23.9 22 43-64 14-35 (194)
103 TIGR02680 conserved hypothetic 94.8 20 0.00042 47.2 30.9 31 82-112 799-829 (1353)
104 PF10473 CENP-F_leu_zip: Leuci 94.6 4.2 9.1E-05 39.5 18.0 90 39-128 8-97 (140)
105 PRK09039 hypothetical protein; 94.5 6.5 0.00014 43.8 22.1 17 489-505 304-320 (343)
106 COG5185 HEC1 Protein involved 94.5 11 0.00024 43.0 38.6 69 73-141 292-360 (622)
107 TIGR01843 type_I_hlyD type I s 94.4 11 0.00023 42.3 23.8 29 7-35 78-106 (423)
108 PF15070 GOLGA2L5: Putative go 94.3 16 0.00034 44.0 33.0 54 2-58 14-67 (617)
109 KOG4673 Transcription factor T 94.1 17 0.00036 43.4 44.5 33 573-605 923-956 (961)
110 KOG4673 Transcription factor T 94.0 17 0.00038 43.3 48.0 108 199-309 538-671 (961)
111 KOG0979 Structural maintenance 93.9 22 0.00048 44.2 27.6 41 186-233 176-216 (1072)
112 TIGR03007 pepcterm_ChnLen poly 93.7 9.7 0.00021 44.2 22.4 25 8-32 166-190 (498)
113 KOG0978 E3 ubiquitin ligase in 93.6 22 0.00048 43.0 42.2 23 42-64 287-309 (698)
114 COG4477 EzrA Negative regulato 93.5 19 0.00041 41.9 37.7 66 347-412 356-421 (570)
115 TIGR03319 YmdA_YtgF conserved 93.4 21 0.00045 42.1 25.1 23 446-468 209-231 (514)
116 PF04849 HAP1_N: HAP1 N-termin 93.3 5.4 0.00012 43.5 17.8 136 6-141 163-299 (306)
117 KOG1003 Actin filament-coating 93.3 11 0.00023 38.5 25.5 63 178-240 82-144 (205)
118 KOG0980 Actin-binding protein 93.2 27 0.00059 42.9 29.0 28 569-596 879-906 (980)
119 PF09730 BicD: Microtubule-ass 93.1 27 0.00057 42.6 36.1 25 566-594 655-679 (717)
120 TIGR01843 type_I_hlyD type I s 93.1 14 0.00031 41.3 22.0 41 102-142 142-182 (423)
121 PF05911 DUF869: Plant protein 93.0 4.4 9.4E-05 49.6 18.3 29 168-196 731-759 (769)
122 KOG4360 Uncharacterized coiled 93.0 4.7 0.0001 46.3 17.2 139 6-144 162-301 (596)
123 KOG0980 Actin-binding protein 92.9 30 0.00065 42.5 31.7 92 155-246 423-514 (980)
124 PF05010 TACC: Transforming ac 92.6 14 0.00031 38.2 23.3 54 170-226 143-196 (207)
125 COG3883 Uncharacterized protei 92.4 18 0.00039 38.8 23.5 60 238-297 50-109 (265)
126 PF09728 Taxilin: Myosin-like 92.3 20 0.00044 39.3 37.1 39 352-390 258-296 (309)
127 PF12325 TMF_TATA_bd: TATA ele 92.3 3.8 8.1E-05 38.8 13.2 40 5-47 18-57 (120)
128 PF10186 Atg14: UV radiation r 92.0 9.4 0.0002 40.8 17.8 25 11-35 21-45 (302)
129 TIGR01005 eps_transp_fam exopo 91.8 8.7 0.00019 47.1 19.3 9 43-51 239-247 (754)
130 PF09728 Taxilin: Myosin-like 91.6 24 0.00053 38.7 39.0 61 266-326 214-274 (309)
131 PRK12704 phosphodiesterase; Pr 91.6 34 0.00074 40.3 28.1 47 446-494 215-262 (520)
132 PF04156 IncA: IncA protein; 91.1 8.7 0.00019 38.7 15.4 22 11-32 82-103 (191)
133 COG4372 Uncharacterized protei 91.0 31 0.00067 38.7 29.4 58 62-119 67-124 (499)
134 TIGR00634 recN DNA repair prot 90.9 40 0.00088 40.0 23.3 29 204-232 345-373 (563)
135 TIGR02680 conserved hypothetic 90.5 71 0.0015 42.1 32.7 6 628-633 1337-1342(1353)
136 TIGR03007 pepcterm_ChnLen poly 90.4 28 0.00062 40.3 20.9 17 16-32 167-183 (498)
137 PF13870 DUF4201: Domain of un 90.3 21 0.00045 35.7 21.1 23 10-32 6-28 (177)
138 COG2433 Uncharacterized conser 90.1 8.5 0.00019 45.3 15.7 32 159-190 477-508 (652)
139 TIGR03017 EpsF chain length de 90.0 38 0.00083 38.6 21.3 23 10-32 178-200 (444)
140 PF04111 APG6: Autophagy prote 89.9 6 0.00013 43.5 14.0 70 73-142 61-130 (314)
141 PF08317 Spc7: Spc7 kinetochor 89.9 35 0.00076 37.6 28.4 87 206-292 181-268 (325)
142 PF04111 APG6: Autophagy prote 89.5 6.3 0.00014 43.4 13.8 16 17-32 16-31 (314)
143 PF10146 zf-C4H2: Zinc finger- 89.4 12 0.00026 39.4 15.1 35 90-124 39-73 (230)
144 PF10481 CENP-F_N: Cenp-F N-te 89.2 31 0.00068 37.0 17.7 43 19-64 20-62 (307)
145 COG3883 Uncharacterized protei 88.9 37 0.0008 36.5 23.5 10 179-188 160-169 (265)
146 COG2433 Uncharacterized conser 88.8 4.9 0.00011 47.2 12.5 81 68-148 421-504 (652)
147 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.5 24 0.00051 33.8 19.3 40 47-86 9-48 (132)
148 PF13870 DUF4201: Domain of un 88.4 29 0.00063 34.7 20.4 72 70-141 43-114 (177)
149 PF05010 TACC: Transforming ac 88.3 34 0.00075 35.5 26.4 39 383-421 164-202 (207)
150 PF08614 ATG16: Autophagy prot 88.0 6.3 0.00014 40.1 11.8 17 48-64 81-97 (194)
151 PRK10869 recombination and rep 87.4 70 0.0015 38.0 23.4 31 203-233 339-369 (553)
152 PF05911 DUF869: Plant protein 87.2 86 0.0019 38.8 30.6 27 373-399 733-759 (769)
153 PF08317 Spc7: Spc7 kinetochor 86.9 54 0.0012 36.2 26.1 20 13-32 78-97 (325)
154 PF11559 ADIP: Afadin- and alp 86.1 35 0.00075 33.2 17.5 79 70-148 46-124 (151)
155 PF10186 Atg14: UV radiation r 85.8 43 0.00093 35.7 17.3 30 79-108 73-102 (302)
156 PF12325 TMF_TATA_bd: TATA ele 85.7 24 0.00052 33.5 13.3 30 82-111 74-103 (120)
157 PF00769 ERM: Ezrin/radixin/mo 85.6 28 0.0006 37.0 15.4 67 76-142 54-120 (246)
158 PF09787 Golgin_A5: Golgin sub 85.0 87 0.0019 36.8 32.1 53 13-65 119-172 (511)
159 PF06818 Fez1: Fez1; InterPro 84.9 51 0.0011 34.0 18.7 93 35-127 11-103 (202)
160 COG4026 Uncharacterized protei 84.2 9.1 0.0002 39.7 10.3 37 72-108 152-188 (290)
161 PF10168 Nup88: Nuclear pore c 82.6 93 0.002 38.2 19.9 6 248-253 700-705 (717)
162 PF14662 CCDC155: Coiled-coil 82.3 63 0.0014 33.1 22.9 42 72-113 70-111 (193)
163 PF13863 DUF4200: Domain of un 81.6 46 0.001 31.1 14.9 25 283-307 68-92 (126)
164 PF10498 IFT57: Intra-flagella 81.1 73 0.0016 35.9 17.0 38 91-128 267-304 (359)
165 KOG0804 Cytoplasmic Zn-finger 81.0 79 0.0017 36.3 16.9 15 125-139 410-424 (493)
166 PF05384 DegS: Sensor protein 80.3 66 0.0014 32.1 15.9 49 13-64 23-71 (159)
167 PF10498 IFT57: Intra-flagella 80.2 37 0.00081 38.1 14.4 92 230-324 231-322 (359)
168 PF15070 GOLGA2L5: Putative go 78.9 1.6E+02 0.0034 35.6 37.7 8 78-85 52-59 (617)
169 KOG4593 Mitotic checkpoint pro 77.8 1.7E+02 0.0037 35.5 50.1 36 546-583 616-656 (716)
170 PF09304 Cortex-I_coil: Cortex 77.8 60 0.0013 30.2 14.7 33 28-63 6-38 (107)
171 TIGR00634 recN DNA repair prot 77.6 1.6E+02 0.0035 35.0 22.6 40 214-253 341-380 (563)
172 KOG0982 Centrosomal protein Nu 77.3 1.4E+02 0.003 34.2 23.6 54 1-54 213-270 (502)
173 KOG0804 Cytoplasmic Zn-finger 76.3 66 0.0014 36.9 14.5 16 353-368 411-426 (493)
174 TIGR01000 bacteriocin_acc bact 76.1 1.6E+02 0.0034 34.1 20.4 27 8-34 95-121 (457)
175 TIGR03319 YmdA_YtgF conserved 76.0 1.7E+02 0.0037 34.5 20.0 11 705-715 454-464 (514)
176 PF15290 Syntaphilin: Golgi-lo 75.3 65 0.0014 34.8 13.5 44 178-228 125-168 (305)
177 PF05278 PEARLI-4: Arabidopsis 75.2 1E+02 0.0022 33.3 15.1 13 83-95 166-178 (269)
178 PF05266 DUF724: Protein of un 74.8 90 0.002 32.0 14.2 15 90-104 131-145 (190)
179 PF14915 CCDC144C: CCDC144C pr 74.5 1.4E+02 0.003 32.7 37.3 12 131-142 90-101 (305)
180 PRK12704 phosphodiesterase; Pr 74.4 1.9E+02 0.0041 34.3 21.2 9 601-609 386-394 (520)
181 PF06818 Fez1: Fez1; InterPro 74.4 1.1E+02 0.0024 31.6 19.1 30 119-148 11-40 (202)
182 PF10481 CENP-F_N: Cenp-F N-te 74.2 1.3E+02 0.0029 32.4 15.7 21 537-557 274-294 (307)
183 PF11559 ADIP: Afadin- and alp 73.9 90 0.0019 30.3 15.2 13 90-102 80-92 (151)
184 PF04423 Rad50_zn_hook: Rad50 73.9 2.5 5.4E-05 34.0 2.2 52 158-221 2-53 (54)
185 PF14915 CCDC144C: CCDC144C pr 73.0 1.5E+02 0.0032 32.4 38.2 17 48-64 31-47 (305)
186 PRK10884 SH3 domain-containing 72.7 57 0.0012 33.8 12.3 25 97-121 139-163 (206)
187 KOG1899 LAR transmembrane tyro 72.0 2.3E+02 0.0049 34.1 21.2 57 43-99 106-162 (861)
188 PF07889 DUF1664: Protein of u 71.4 84 0.0018 30.2 12.1 18 47-64 49-66 (126)
189 PRK12705 hypothetical protein; 71.3 2.2E+02 0.0048 33.6 24.4 26 446-471 203-228 (508)
190 KOG4593 Mitotic checkpoint pro 70.9 2.5E+02 0.0054 34.1 49.2 78 199-284 238-315 (716)
191 TIGR01005 eps_transp_fam exopo 70.8 2.6E+02 0.0057 34.3 21.4 9 675-683 696-704 (754)
192 PRK00106 hypothetical protein; 70.6 2.3E+02 0.005 33.7 31.8 24 446-469 230-253 (535)
193 PRK00106 hypothetical protein; 70.2 2.4E+02 0.0052 33.6 21.2 7 706-712 476-482 (535)
194 COG4477 EzrA Negative regulato 70.1 2.3E+02 0.005 33.4 43.2 62 40-101 103-164 (570)
195 PF13851 GAS: Growth-arrest sp 69.4 1.4E+02 0.0031 30.7 23.6 27 351-377 149-175 (201)
196 PF00769 ERM: Ezrin/radixin/mo 69.3 1.6E+02 0.0035 31.3 16.0 8 235-242 191-198 (246)
197 PF15290 Syntaphilin: Golgi-lo 69.1 1.3E+02 0.0027 32.7 13.9 38 392-429 136-173 (305)
198 PF09738 DUF2051: Double stran 69.0 91 0.002 34.3 13.4 6 14-19 22-27 (302)
199 PF12072 DUF3552: Domain of un 68.8 1.4E+02 0.0031 30.5 16.3 43 204-246 70-112 (201)
200 PF06005 DUF904: Protein of un 68.4 78 0.0017 27.3 10.9 61 53-113 9-69 (72)
201 PF10234 Cluap1: Clusterin-ass 68.4 1.8E+02 0.0039 31.5 17.5 74 345-418 183-256 (267)
202 KOG2751 Beclin-like protein [S 67.7 1.4E+02 0.0031 34.1 14.7 16 17-32 150-165 (447)
203 PRK10884 SH3 domain-containing 67.6 72 0.0016 33.1 11.8 33 88-120 137-169 (206)
204 PF04582 Reo_sigmaC: Reovirus 67.1 11 0.00024 41.5 6.0 117 8-127 33-149 (326)
205 smart00787 Spc7 Spc7 kinetocho 66.7 2.1E+02 0.0045 31.6 28.3 87 204-290 174-261 (312)
206 PF12777 MT: Microtubule-bindi 66.6 47 0.001 36.9 11.0 94 53-146 219-312 (344)
207 PRK10869 recombination and rep 66.4 2.8E+02 0.0061 33.0 23.3 68 355-422 302-369 (553)
208 COG0497 RecN ATPase involved i 65.7 2.9E+02 0.0063 33.0 24.6 35 199-233 336-370 (557)
209 KOG4603 TBP-1 interacting prot 65.7 1.6E+02 0.0034 29.8 13.0 23 123-145 121-143 (201)
210 PF04849 HAP1_N: HAP1 N-termin 64.2 2.3E+02 0.005 31.2 26.4 27 77-103 98-124 (306)
211 PF14662 CCDC155: Coiled-coil 64.0 1.8E+02 0.0039 29.9 25.2 52 73-124 57-108 (193)
212 PF04949 Transcrip_act: Transc 61.7 1.7E+02 0.0037 28.8 14.4 47 356-402 81-127 (159)
213 PF10234 Cluap1: Clusterin-ass 61.7 1.9E+02 0.0041 31.3 13.9 10 171-180 247-256 (267)
214 smart00787 Spc7 Spc7 kinetocho 61.3 2.6E+02 0.0057 30.9 26.8 19 14-32 74-92 (312)
215 PF04012 PspA_IM30: PspA/IM30 61.2 2E+02 0.0044 29.6 18.7 22 11-32 31-52 (221)
216 PRK00409 recombination and DNA 60.0 2.2E+02 0.0049 35.4 16.1 61 204-264 501-561 (782)
217 PF13166 AAA_13: AAA domain 59.9 3.9E+02 0.0085 32.4 25.5 11 490-500 637-647 (712)
218 PF05266 DUF724: Protein of un 58.2 2.2E+02 0.0049 29.1 15.9 58 70-127 118-175 (190)
219 PF15066 CAGE1: Cancer-associa 57.4 3.6E+02 0.0079 31.3 24.6 52 360-411 464-516 (527)
220 PF07111 HCR: Alpha helical co 57.2 4.4E+02 0.0096 32.2 43.7 95 196-293 174-274 (739)
221 PF09304 Cortex-I_coil: Cortex 57.1 1.7E+02 0.0036 27.3 13.5 54 8-64 14-67 (107)
222 KOG4360 Uncharacterized coiled 56.0 4E+02 0.0087 31.4 16.2 19 160-178 279-297 (596)
223 KOG1899 LAR transmembrane tyro 55.9 4.4E+02 0.0096 31.8 19.7 41 211-251 223-263 (861)
224 PF07035 Mic1: Colon cancer-as 55.4 8.2 0.00018 38.6 2.3 77 568-648 45-129 (167)
225 PF06008 Laminin_I: Laminin Do 55.3 2.8E+02 0.0062 29.4 30.7 58 168-228 151-208 (264)
226 KOG0992 Uncharacterized conser 53.3 4.4E+02 0.0095 31.0 38.1 37 452-488 551-587 (613)
227 KOG1962 B-cell receptor-associ 51.1 50 0.0011 34.5 7.2 61 268-328 151-211 (216)
228 PF13851 GAS: Growth-arrest sp 50.2 3.1E+02 0.0066 28.3 26.7 33 159-191 51-83 (201)
229 TIGR02338 gimC_beta prefoldin, 49.1 2.1E+02 0.0045 26.4 10.4 26 10-35 3-28 (110)
230 KOG4438 Centromere-associated 48.9 4.7E+02 0.01 30.1 37.3 30 207-236 274-303 (446)
231 KOG4657 Uncharacterized conser 48.9 3.5E+02 0.0076 28.6 18.2 27 116-142 91-117 (246)
232 PRK00409 recombination and DNA 48.6 5E+02 0.011 32.4 16.5 27 477-511 746-772 (782)
233 PF13863 DUF4200: Domain of un 48.5 2.3E+02 0.005 26.3 16.0 28 171-198 15-42 (126)
234 COG5185 HEC1 Protein involved 47.8 5.2E+02 0.011 30.2 39.6 24 169-192 336-359 (622)
235 KOG1937 Uncharacterized conser 47.3 5.1E+02 0.011 30.1 33.4 11 205-215 396-406 (521)
236 cd07666 BAR_SNX7 The Bin/Amphi 46.9 3.9E+02 0.0084 28.5 18.8 35 8-42 66-100 (243)
237 KOG0239 Kinesin (KAR3 subfamil 46.4 5.8E+02 0.013 31.3 16.2 35 106-140 243-277 (670)
238 PF12795 MscS_porin: Mechanose 46.1 3.7E+02 0.0081 28.1 19.5 61 41-101 78-138 (240)
239 PF12761 End3: Actin cytoskele 45.7 79 0.0017 32.5 7.5 21 15-35 94-114 (195)
240 PF07889 DUF1664: Protein of u 45.6 2.8E+02 0.0062 26.6 12.3 17 40-56 49-65 (126)
241 TIGR01069 mutS2 MutS2 family p 45.5 3.9E+02 0.0085 33.3 14.9 49 214-262 506-554 (771)
242 KOG0972 Huntingtin interacting 45.4 1.5E+02 0.0032 32.4 9.7 24 99-122 303-326 (384)
243 KOG0999 Microtubule-associated 44.6 6.2E+02 0.013 30.2 35.5 294 101-421 5-373 (772)
244 PF15456 Uds1: Up-regulated Du 44.3 2.9E+02 0.0063 26.4 11.0 32 114-145 77-108 (124)
245 TIGR01069 mutS2 MutS2 family p 44.0 4.7E+02 0.01 32.6 15.3 26 478-511 736-761 (771)
246 PF06008 Laminin_I: Laminin Do 44.0 4.2E+02 0.0092 28.1 27.1 44 16-62 23-66 (264)
247 KOG2751 Beclin-like protein [S 43.7 5.7E+02 0.012 29.5 15.2 26 10-35 150-175 (447)
248 COG5283 Phage-related tail pro 43.2 8.8E+02 0.019 31.6 18.8 64 24-90 22-85 (1213)
249 TIGR01010 BexC_CtrB_KpsE polys 43.1 5E+02 0.011 28.8 14.2 14 109-122 247-260 (362)
250 PF10212 TTKRSYEDQ: Predicted 43.0 5.3E+02 0.012 30.5 14.4 58 70-127 428-485 (518)
251 PF13514 AAA_27: AAA domain 42.8 8.8E+02 0.019 31.5 47.2 28 165-192 682-709 (1111)
252 PF11932 DUF3450: Protein of u 42.6 4.3E+02 0.0094 27.8 15.5 39 77-115 50-88 (251)
253 PF04582 Reo_sigmaC: Reovirus 42.5 47 0.001 36.7 5.7 18 15-32 33-50 (326)
254 PRK11281 hypothetical protein; 42.5 9.1E+02 0.02 31.5 28.5 241 5-256 82-349 (1113)
255 PF10267 Tmemb_cc2: Predicted 42.3 5.8E+02 0.013 29.2 14.8 12 111-122 276-287 (395)
256 KOG0243 Kinesin-like protein [ 42.3 8.7E+02 0.019 31.3 42.9 384 92-498 406-804 (1041)
257 PF10267 Tmemb_cc2: Predicted 41.1 6E+02 0.013 29.1 15.0 37 105-141 277-314 (395)
258 PF06785 UPF0242: Uncharacteri 40.7 5.6E+02 0.012 28.6 16.9 91 50-140 87-177 (401)
259 PF10212 TTKRSYEDQ: Predicted 40.1 6.5E+02 0.014 29.8 14.5 67 75-141 419-485 (518)
260 PF09789 DUF2353: Uncharacteri 40.1 5.6E+02 0.012 28.5 24.6 28 273-300 201-228 (319)
261 PF05384 DegS: Sensor protein 39.9 4E+02 0.0086 26.6 19.9 68 22-99 4-71 (159)
262 PRK03947 prefoldin subunit alp 39.8 3.4E+02 0.0074 25.8 12.1 26 10-35 6-31 (140)
263 TIGR02231 conserved hypothetic 39.7 2.4E+02 0.0052 33.1 11.6 24 104-127 138-161 (525)
264 PF03915 AIP3: Actin interacti 39.3 6.6E+02 0.014 29.1 17.5 15 18-32 152-166 (424)
265 PF07851 TMPIT: TMPIT-like pro 38.8 3.4E+02 0.0073 30.3 11.6 15 42-56 5-19 (330)
266 PRK09841 cryptic autophosphory 38.5 6.5E+02 0.014 31.0 15.3 9 127-135 372-380 (726)
267 PF02994 Transposase_22: L1 tr 38.5 92 0.002 35.1 7.5 16 107-122 147-162 (370)
268 TIGR02231 conserved hypothetic 38.5 1.5E+02 0.0033 34.8 9.6 24 9-32 70-93 (525)
269 PF09787 Golgin_A5: Golgin sub 38.3 7.3E+02 0.016 29.2 35.8 24 167-190 218-241 (511)
270 KOG2991 Splicing regulator [RN 38.1 5.4E+02 0.012 27.7 20.3 58 373-430 243-300 (330)
271 PF03962 Mnd1: Mnd1 family; I 36.0 4.9E+02 0.011 26.5 12.1 24 375-398 144-167 (188)
272 PF09789 DUF2353: Uncharacteri 35.5 6.6E+02 0.014 27.9 25.2 37 249-285 191-227 (319)
273 PF04912 Dynamitin: Dynamitin 35.3 7E+02 0.015 28.2 16.5 31 111-141 336-366 (388)
274 PRK04325 hypothetical protein; 35.1 2.6E+02 0.0057 24.1 8.1 52 264-315 5-56 (74)
275 PF03999 MAP65_ASE1: Microtubu 34.7 1.2E+02 0.0027 36.5 8.2 12 21-32 30-41 (619)
276 PF07851 TMPIT: TMPIT-like pro 34.3 3.4E+02 0.0073 30.3 10.7 23 106-128 27-49 (330)
277 PF05008 V-SNARE: Vesicle tran 34.0 2.4E+02 0.0052 24.0 7.8 18 109-126 59-76 (79)
278 COG5139 Uncharacterized conser 33.3 80 0.0017 34.3 5.5 83 496-590 210-310 (397)
279 KOG2010 Double stranded RNA bi 31.9 5.4E+02 0.012 28.6 11.4 64 27-93 136-199 (405)
280 PF03962 Mnd1: Mnd1 family; I 31.9 5.7E+02 0.012 26.1 13.1 27 98-124 136-162 (188)
281 PRK02119 hypothetical protein; 31.5 2.9E+02 0.0063 23.9 7.8 41 85-125 11-51 (73)
282 PF04102 SlyX: SlyX; InterPro 31.3 2.5E+02 0.0054 23.8 7.3 49 266-314 2-50 (69)
283 PF13514 AAA_27: AAA domain 30.8 1.3E+03 0.028 29.9 54.5 37 384-420 893-929 (1111)
284 KOG1937 Uncharacterized conser 30.8 9.1E+02 0.02 28.1 35.0 45 265-309 386-430 (521)
285 KOG2264 Exostosin EXT1L [Signa 30.6 2.5E+02 0.0055 33.3 9.2 35 661-695 699-736 (907)
286 PF10046 BLOC1_2: Biogenesis o 29.7 4.3E+02 0.0093 24.0 11.3 91 278-368 3-99 (99)
287 PRK00295 hypothetical protein; 29.6 3.2E+02 0.007 23.2 7.6 50 266-315 3-52 (68)
288 PRK09343 prefoldin subunit bet 29.3 4.9E+02 0.011 24.5 13.0 38 7-47 4-41 (121)
289 KOG4302 Microtubule-associated 28.5 1.2E+03 0.025 28.7 30.9 33 601-633 619-651 (660)
290 KOG1853 LIS1-interacting prote 28.3 7.7E+02 0.017 26.5 20.2 24 535-558 238-261 (333)
291 PF10805 DUF2730: Protein of u 28.3 4.8E+02 0.01 24.0 9.5 21 91-111 66-86 (106)
292 PF04065 Not3: Not1 N-terminal 28.0 7.5E+02 0.016 26.2 15.5 27 238-264 6-32 (233)
293 PRK00736 hypothetical protein; 27.9 3.5E+02 0.0076 23.0 7.6 49 266-314 3-51 (68)
294 TIGR02338 gimC_beta prefoldin, 27.7 4.8E+02 0.01 23.9 11.6 18 117-134 80-97 (110)
295 KOG4809 Rab6 GTPase-interactin 27.5 1.1E+03 0.024 28.1 33.7 37 305-341 516-552 (654)
296 PF13166 AAA_13: AAA domain 27.0 1.2E+03 0.026 28.3 31.6 15 177-191 256-271 (712)
297 KOG0288 WD40 repeat protein Ti 26.9 1E+03 0.022 27.4 17.2 9 627-635 343-351 (459)
298 PRK10476 multidrug resistance 26.7 8.8E+02 0.019 26.6 16.2 7 134-140 130-136 (346)
299 PF12761 End3: Actin cytoskele 26.6 4.4E+02 0.0096 27.2 9.3 23 6-28 99-121 (195)
300 PF06785 UPF0242: Uncharacteri 26.3 9.6E+02 0.021 26.9 17.9 83 63-145 86-168 (401)
301 PF09755 DUF2046: Uncharacteri 26.0 9.3E+02 0.02 26.7 32.6 54 232-285 148-202 (310)
302 PF14726 RTTN_N: Rotatin, an a 25.8 1E+02 0.0022 28.3 4.2 45 566-610 28-72 (98)
303 PF03999 MAP65_ASE1: Microtubu 25.5 3.3E+02 0.0071 32.9 9.7 18 125-142 228-245 (619)
304 PF05700 BCAS2: Breast carcino 25.4 4.3E+02 0.0093 27.5 9.4 71 39-112 141-211 (221)
305 KOG2264 Exostosin EXT1L [Signa 25.3 5E+02 0.011 31.0 10.3 18 613-630 513-530 (907)
306 PRK04406 hypothetical protein; 25.2 4.6E+02 0.0099 22.8 8.5 50 265-314 8-57 (75)
307 cd00632 Prefoldin_beta Prefold 25.1 5.2E+02 0.011 23.4 10.5 20 90-109 77-96 (105)
308 PRK12705 hypothetical protein; 24.7 1.2E+03 0.026 27.6 20.5 8 602-609 375-382 (508)
309 PRK05431 seryl-tRNA synthetase 24.3 4.6E+02 0.0099 30.2 10.1 11 727-737 392-402 (425)
310 PF04012 PspA_IM30: PspA/IM30 24.0 7.9E+02 0.017 25.1 21.4 45 39-83 28-72 (221)
311 KOG2150 CCR4-NOT transcription 24.0 1.3E+03 0.028 27.7 15.2 23 303-325 74-96 (575)
312 KOG0249 LAR-interacting protei 23.8 1.5E+03 0.032 28.2 22.3 75 186-262 72-146 (916)
313 COG1382 GimC Prefoldin, chaper 23.4 6.5E+02 0.014 24.0 11.9 10 18-27 14-23 (119)
314 PF15066 CAGE1: Cancer-associa 23.2 1.2E+03 0.027 27.2 24.9 16 196-211 458-473 (527)
315 COG2900 SlyX Uncharacterized p 23.1 5E+02 0.011 22.6 8.0 51 266-316 6-56 (72)
316 PF09744 Jnk-SapK_ap_N: JNK_SA 22.6 7.7E+02 0.017 24.5 15.0 79 273-351 27-105 (158)
317 PF04949 Transcrip_act: Transc 22.0 7.9E+02 0.017 24.4 16.9 55 97-151 84-138 (159)
318 COG1382 GimC Prefoldin, chaper 21.9 7E+02 0.015 23.8 10.7 6 27-32 16-21 (119)
319 PRK15422 septal ring assembly 21.9 5.6E+02 0.012 22.7 10.5 35 53-87 9-43 (79)
320 KOG4438 Centromere-associated 21.9 1.3E+03 0.028 26.8 33.4 61 270-330 253-313 (446)
321 TIGR02895 spore_sigI RNA polym 21.8 4.8E+02 0.01 27.2 8.8 122 496-625 49-175 (218)
322 PF06810 Phage_GP20: Phage min 21.8 6E+02 0.013 25.1 9.1 51 357-411 25-75 (155)
323 PRK09841 cryptic autophosphory 20.9 1.6E+03 0.035 27.6 17.3 21 177-197 363-383 (726)
324 TIGR03545 conserved hypothetic 20.7 6E+02 0.013 30.5 10.3 35 159-194 167-201 (555)
325 PF05700 BCAS2: Breast carcino 20.6 9.4E+02 0.02 25.0 10.8 21 79-99 146-166 (221)
326 KOG3859 Septins (P-loop GTPase 20.5 1.2E+03 0.025 25.8 11.5 36 250-285 329-365 (406)
327 PLN02939 transferase, transfer 20.4 1.9E+03 0.041 28.3 20.1 172 4-185 220-401 (977)
328 PF15397 DUF4618: Domain of un 20.3 1.1E+03 0.024 25.4 28.0 13 45-57 10-22 (258)
329 PF12795 MscS_porin: Mechanose 20.2 1E+03 0.022 24.9 21.6 39 81-119 97-135 (240)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=1.1e-62 Score=521.49 Aligned_cols=226 Identities=34% Similarity=0.497 Sum_probs=211.1
Q ss_pred cccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHhhCCCchhHHHHHhhccCCCCCCCCCcccchhHhHhhHHHHHh
Q 004516 450 KTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLE 529 (747)
Q Consensus 450 ~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~~a~DPaklVLdai~gf~~~~~~~g~~~~~~~~~r~aCilLLe 529 (747)
.+|+++|.+|||+||++|++.|++++.++|+|+|+||++|||||+||||||+|||+++.+. ++++++.++||+||+|||
T Consensus 13 ~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilLLE 91 (290)
T PF07899_consen 13 PELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILLLE 91 (290)
T ss_pred HHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999765 566788999999999999
Q ss_pred hchhcCCCCChHHHHHHHHHHHHHHHhh-hhhhcchHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcccccHHHHhhh
Q 004516 530 QLSTVAPEINAQVRDEAMKVAGEWKKKM-RVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTL 608 (747)
Q Consensus 530 ~L~~~~p~i~~~vke~A~~lA~~WK~ki-~~~~~~~lea~gFL~lla~fgl~s~fd~del~~L~~~v~~~~~a~~L~~~L 608 (747)
+|++++|.++|+||++|+++|.+||++| +.++.++++||||||||++|||+++||.|+|++||..|++|+|+|+||++|
T Consensus 92 ~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sL 171 (290)
T PF07899_consen 92 QLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSL 171 (290)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHc
Confidence 9999999999999999999999999999 677889999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHhhcCCccceeeee--cc-CCCCCCchhhhhhccccC---CCCCCCCCCccccccCCccchH
Q 004516 609 GFADKEPGLQCSTTAEGRSAPSMLVG--TS-APTNQPDSSLMNLPQYSG---MDPSNSTSSPVSQFSGAQPQLE 676 (747)
Q Consensus 609 gl~~k~~d~I~~LI~~g~~i~Av~~~--~~-~~k~~p~~ll~~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 676 (747)
||++||||||++||++||||+||+|+ || +|+|||+|||++||+++. .++.+.+.+|.++..+..+++-
T Consensus 172 gl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~~a~~ea~~kel~ 245 (290)
T PF07899_consen 172 GLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSSEAQNEANEKELA 245 (290)
T ss_pred CchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999999999999999999999996 68 999999999999999974 4455666666788888777764
No 2
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.4e-17 Score=193.75 Aligned_cols=347 Identities=21% Similarity=0.278 Sum_probs=284.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHH
Q 004516 248 SIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELK 327 (747)
Q Consensus 248 ~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le 327 (747)
.+......++...- .+++.++++.++.++++++++...+...+..+..+.........+.++..+.+.++..++.|.
T Consensus 388 ~~k~~~~~~e~~~v---k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDV---KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444 367889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhHHHhhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 328 FVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRL 407 (747)
Q Consensus 328 ~~~~~L~e~~kEle~k~~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~ 407 (747)
.+..+|..++..+. .++..+++++.||.++++....+++.+.++|+.+....+...+.++.++..+......+.+..
T Consensus 465 e~~~~l~~~t~~~~---~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~ 541 (1293)
T KOG0996|consen 465 EILDSLKQETEGIR---EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKK 541 (1293)
T ss_pred HHHHHHhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhhhhHhhhhhhhhhhhhhhhcccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHh
Q 004516 408 QDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIK 487 (747)
Q Consensus 408 keLe~k~k~le~~~kE~el~E~~i~~~~~~~~~~~~~~~~~~~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~ 487 (747)
..+......+.+...++...++.++...+..... ..-++.++++ -.|+..++.
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~-----------------------~~~~~~~rqr----veE~ks~~~ 594 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNL-----------------------KSQLNKLRQR----VEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH-----------------------HHHHHHHHHH----HHHHHHHHH
Confidence 9999888888887777776666665555443222 2334444443 357888899
Q ss_pred hCCCchhHHHHH---------hhccCCCCCCCCC--cccchhHhHhhHHHHHhhchhcCCCCChHHHHHHHHHHHHHHHh
Q 004516 488 SARDPALLVLHA---------ISGFYPPHSREGD--LEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKK 556 (747)
Q Consensus 488 ~a~DPaklVLda---------i~gf~~~~~~~g~--~~~~~~~~r~aCilLLe~L~~~~p~i~~~vke~A~~lA~~WK~k 556 (747)
.+..-++ ||+| |-|||++.+..|. ..|| ++++++|.. |+.+++.+... | +.|+.+..+
T Consensus 595 ~~~s~~k-Vl~al~r~kesG~i~Gf~GRLGDLg~Id~kYD-vAIsTac~~-LdyiVVdt~e~-------a-q~cI~fl~~ 663 (1293)
T KOG0996|consen 595 SSRSRNK-VLDALMRLKESGRIPGFYGRLGDLGAIDEKYD-VAISTACAR-LDYIVVDTIET-------A-QECINFLKK 663 (1293)
T ss_pred hhhhhhH-HHHHHHHHHHcCCCCccccccccccccchHHH-HHHHHhccc-cceEEeccHHH-------H-HHHHHHHHH
Confidence 9999999 9999 5589999988876 4677 888999999 88887766554 7 889999998
Q ss_pred hhhhhcchHHHHHHHH--HHh--hhCCCCCCChhHHHHHHHHhhc--ccccHHHHhhhCCCCCcchHHHHHhhcCCccce
Q 004516 557 MRVAVENSLEVLGFLH--LLA--AYRLAPAFDGEELESLLRIVAQ--HRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPS 630 (747)
Q Consensus 557 i~~~~~~~lea~gFL~--lla--~fgl~s~fd~del~~L~~~v~~--~~~a~~L~~~Lgl~~k~~d~I~~LI~~g~~i~A 630 (747)
+.+++..|+. .++ .+.+++.-+|+.+++||+.|.. .++.|+||-+|+-+ |+..+-. .|
T Consensus 664 ------~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdt---------LV~d~Le-QA 727 (1293)
T KOG0996|consen 664 ------NNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDT---------LVADNLE-QA 727 (1293)
T ss_pred ------cCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhh---------hhhcCHH-HH
Confidence 7888777755 677 8899999999999999999998 56899999998854 3322211 37
Q ss_pred eeeecc-CCCCCCchhhhhhccccC
Q 004516 631 MLVGTS-APTNQPDSSLMNLPQYSG 654 (747)
Q Consensus 631 v~~~~~-~~k~~p~~ll~~y~~~~~ 654 (747)
-++||| .-+|.-|+|=-+.|..|+
T Consensus 728 tRiaygk~rr~RVvTL~G~lIe~SG 752 (1293)
T KOG0996|consen 728 TRIAYGKDRRWRVVTLDGSLIEKSG 752 (1293)
T ss_pred HHHhhcCCCceEEEEecceeecccc
Confidence 788999 555887777677777774
No 3
>PRK03918 chromosome segregation protein; Provisional
Probab=99.52 E-value=7.5e-10 Score=135.56 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=26.5
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhH
Q 004516 173 ELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLE 236 (747)
Q Consensus 173 ~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele 236 (747)
......||.|+.+|...+. ...+.++..++...+.++.....++.....++.
T Consensus 432 ~~~~~~Cp~c~~~L~~~~~------------~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 432 KKAKGKCPVCGRELTEEHR------------KELLEEYTAELKRIEKELKEIEEKERKLRKELR 483 (880)
T ss_pred HhcCCCCCCCCCcCCchhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456667777666554 333445555555555555555444444444333
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=99.46 E-value=2.2e-09 Score=131.57 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhHHHHHHhHHHHH
Q 004516 156 KELQLLKNLIKECCDEIEL--REKKVGEVQRSIEEHE 190 (747)
Q Consensus 156 ~~L~~~~~~~ee~~~El~~--kekel~~~~k~ie~~~ 190 (747)
..+......+..+..+++. .+..|+.|++.+....
T Consensus 429 ~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~ 465 (880)
T PRK02224 429 AELEATLRTARERVEEAEALLEAGKCPECGQPVEGSP 465 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcc
Confidence 3444444444445555543 4567888887766544
No 5
>PRK01156 chromosome segregation protein; Provisional
Probab=99.43 E-value=1.2e-08 Score=125.57 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=51.7
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHH----HHHH
Q 004516 175 REKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQ----SSIK 250 (747)
Q Consensus 175 kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~----~~i~ 250 (747)
....||.|.+++...+. ...+..+..++...++++......+....++++.....++... ..+.
T Consensus 451 ~~~~Cp~c~~~~~~e~~------------~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~ 518 (895)
T PRK01156 451 GQSVCPVCGTTLGEEKS------------NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSI 518 (895)
T ss_pred cCCCCCCCCCcCChhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 34457777777775544 4557778888888877777777777666666655544444321 1222
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 004516 251 ELWMKFHSEQEKLELLQGRVRLHENEVESLE 281 (747)
Q Consensus 251 e~~~ele~k~~~l~~lee~~kele~K~k~~E 281 (747)
+...++++-..+++.+...++.++.+.++++
T Consensus 519 ~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~ 549 (895)
T PRK01156 519 NEYNKIESARADLEDIKIKINELKDKHDKYE 549 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223333344444555555555444
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.36 E-value=2.2e-07 Score=114.18 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 004516 12 LRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 12 l~~~e~~~~~lrk~l~~Le~~ 32 (747)
|..++.++..++.++..+...
T Consensus 208 l~~~~~~l~el~~~i~~~~~~ 228 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQ 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=99.33 E-value=7.5e-07 Score=109.41 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004516 13 RVAESKKEALRRSFDIA 29 (747)
Q Consensus 13 ~~~e~~~~~lrk~l~~L 29 (747)
+.++.+...+...+..+
T Consensus 172 ~~~~~~~~~l~~~l~~l 188 (880)
T PRK03918 172 KEIKRRIERLEKFIKRT 188 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.20 E-value=6.9e-06 Score=105.17 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004516 204 RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQE 283 (747)
Q Consensus 204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~Eke 283 (747)
+...+++..+++.-.......+...+.....+..++.|+-.+..++++....+...+++++.++.+++++......-...
T Consensus 1040 Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1040 EKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333444444444445555555555554555544444444444444444444444444444334
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 004516 284 LDSMRKQQKKYFDDVELKKRELNEI 308 (747)
Q Consensus 284 L~~~~k~l~~~~~ele~kek~~e~~ 308 (747)
.....++......+++..+.+++..
T Consensus 1120 r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1120 RAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455444444443
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.16 E-value=1.7e-05 Score=101.83 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHH
Q 004516 162 KNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKE 241 (747)
Q Consensus 162 ~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~E 241 (747)
.....+....+..++-++...+..+++....+...+..+.-....|.+..++|+.-........+....+..+++....+
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555666666666555555555444444455555555555444444444444444444444444444
Q ss_pred HHH
Q 004516 242 LEL 244 (747)
Q Consensus 242 l~~ 244 (747)
|+.
T Consensus 1141 Lee 1143 (1930)
T KOG0161|consen 1141 LEE 1143 (1930)
T ss_pred HHH
Confidence 433
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.11 E-value=2.8e-06 Score=106.84 Aligned_cols=9 Identities=44% Similarity=0.220 Sum_probs=5.0
Q ss_pred HHHHHHHHh
Q 004516 548 KVAGEWKKK 556 (747)
Q Consensus 548 ~lA~~WK~k 556 (747)
.-|+.|...
T Consensus 561 ~~~i~~l~~ 569 (1164)
T TIGR02169 561 KEAIELLKR 569 (1164)
T ss_pred HHHHHHHHh
Confidence 455666554
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.11 E-value=4.4e-06 Score=104.90 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516 11 ELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGK 90 (747)
Q Consensus 11 el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~ 90 (747)
++..+..+++.++..+..+...... +...+..++..+..+...+......+......+......+..+..++..+..
T Consensus 671 ~~~~l~~e~~~l~~~~~~l~~~l~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 747 (1179)
T TIGR02168 671 SILERRREIEELEEKIEELEEKIAE---LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747 (1179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544444332 4444444444444444444444443333333333333333333333333333
Q ss_pred hHHHHHHHHHHH
Q 004516 91 KIEDCNGELACK 102 (747)
Q Consensus 91 eLeElE~ele~~ 102 (747)
++..+..++...
T Consensus 748 e~~~~~~~~~~~ 759 (1179)
T TIGR02168 748 RIAQLSKELTEL 759 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.3e-05 Score=102.49 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHhhccc-cc-HHHHhhhCCCCCcchHHHHHhhcCCccceee-ee-----cc-CCCCCCchhhh
Q 004516 582 AFDGEELESLLRIVAQHR-QT-PKLRQTLGFADKEPGLQCSTTAEGRSAPSML-VG-----TS-APTNQPDSSLM 647 (747)
Q Consensus 582 ~fd~del~~L~~~v~~~~-~a-~~L~~~Lgl~~k~~d~I~~LI~~g~~i~Av~-~~-----~~-~~k~~p~~ll~ 647 (747)
.+|++....|...+.... .. ..--.++-++.+-+++|..+... .+++-++ +. ++ ..+=+|.++++
T Consensus 1235 ~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1308 (1311)
T TIGR00606 1235 NLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRS-EYVEKFYRLKKNEDQCSEIVKCSPSSLGK 1308 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhc-cccceeeeeeeccccCceeEeeCCccccc
Confidence 456666665554443310 00 00012344667777788777643 3333332 21 22 45556665544
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.09 E-value=3.4e-06 Score=106.60 Aligned_cols=227 Identities=19% Similarity=0.188 Sum_probs=107.7
Q ss_pred HhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 004516 349 STEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELRE 428 (747)
Q Consensus 349 ~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~el~E 428 (747)
....++.....++...+.+++.....++.+...++.+...+..+...+..++..+.....++......++.........+
T Consensus 387 ~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (1163)
T COG1196 387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE 466 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556666655555565556565555555555555555555555555555555555544444443333
Q ss_pred hhhhhHhhhhhhhhhhhhhhhcccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHhhCCCchhHHHHH----hhccC
Q 004516 429 KEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHA----ISGFY 504 (747)
Q Consensus 429 ~~i~~~~~~~~~~~~~~~~~~~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~~a~DPaklVLda----i~gf~ 504 (747)
..+.......... ...+......+..+...... .++.+-|+.+ +.|+|
T Consensus 467 ~~~~~~~~~~~~~-----------------------~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~Gv~ 518 (1163)
T COG1196 467 RELAELQEELQRL-----------------------EKELSSLEARLDRLEAEQRA-----SQGVRAVLEALESGLPGVY 518 (1163)
T ss_pred HHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHhccCCCcc
Confidence 3333222221111 11111111111111111111 3333334444 44555
Q ss_pred CCCCCCCC--cccchhHhHhhHHHHHhhchhcCCCCChHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHH--HHhhhCCC
Q 004516 505 PPHSREGD--LEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLH--LLAAYRLA 580 (747)
Q Consensus 505 ~~~~~~g~--~~~~~~~~r~aCilLLe~L~~~~p~i~~~vke~A~~lA~~WK~ki~~~~~~~lea~gFL~--lla~fgl~ 580 (747)
|+-+..+. .+|. .++..||+-=|..+++.++.+ |...-.-||.+ ..+...|+- .+..+...
T Consensus 519 G~v~~li~v~~~y~-~Aie~alG~~l~~vVV~~~~~-------a~~~i~~lk~~-------~~gr~tflpl~~i~~~~~~ 583 (1163)
T COG1196 519 GPVAELIKVKEKYE-TALEAALGNRLQAVVVENEEV-------AKKAIEFLKEN-------KAGRATFLPLDRIKPLRSL 583 (1163)
T ss_pred chHHHhcCcChHHH-HHHHHHcccccCCeeeCChHH-------HHHHHHHHhhc-------CCCccccCchhhhcccccc
Confidence 55443322 2333 555666665566666666665 64444445543 455556633 33333332
Q ss_pred CCC-ChhHHHHHHHHhhc-ccccHHHHhhhCCCCCcchHH
Q 004516 581 PAF-DGEELESLLRIVAQ-HRQTPKLRQTLGFADKEPGLQ 618 (747)
Q Consensus 581 s~f-d~del~~L~~~v~~-~~~a~~L~~~Lgl~~k~~d~I 618 (747)
+.. .++.+.-.++.|.- +++.|.+...||-+--++++-
T Consensus 584 ~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~ 623 (1163)
T COG1196 584 KSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLE 623 (1163)
T ss_pred ccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHH
Confidence 222 45555555555554 345677777777665555553
No 14
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=0.00018 Score=85.74 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhh--hcchHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 004516 548 KVAGEWKKKMRVA--VENSLEVLGFLHLLAAYRLAPAFDGEELESLLRI 594 (747)
Q Consensus 548 ~lA~~WK~ki~~~--~~~~lea~gFL~lla~fgl~s~fd~del~~L~~~ 594 (747)
++..-||..+..= |.-||-|+.+++-+-.|-.+|.|=-|||---++.
T Consensus 1071 ~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDL 1119 (1174)
T KOG0933|consen 1071 KFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDL 1119 (1174)
T ss_pred EeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcc
Confidence 3455799999753 4458999999999999999999988877644443
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=4.3e-05 Score=97.94 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=19.2
Q ss_pred HHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 366 NQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIK 413 (747)
Q Consensus 366 ~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k 413 (747)
..+......++.++..+..+...+..+...+.............|...
T Consensus 977 ~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 977 TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444433444444443
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.02 E-value=0.00018 Score=86.32 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=11.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHh
Q 004516 192 QLAFKESKISSMRTLIEEYEEVLK 215 (747)
Q Consensus 192 el~~ke~~l~~~e~~i~e~~~EL~ 215 (747)
.+..|...|..++..+.....||.
T Consensus 232 ~ie~Kd~ki~~lEr~l~~le~Ei~ 255 (775)
T PF10174_consen 232 VIEEKDTKIASLERMLRDLEDEIY 255 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444443
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.01 E-value=1.6e-05 Score=100.24 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=12.1
Q ss_pred HHhhHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 004516 373 HESNLFQTRTIGYLKELKEKEKHFDSLKKG 402 (747)
Q Consensus 373 ~ELe~~~~~~e~~~keleele~~leslE~~ 402 (747)
.+++.....+..+...++.+.....++...
T Consensus 979 ~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~ 1008 (1164)
T TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAILER 1008 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.00 E-value=0.00012 Score=87.97 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred hhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 345 EESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEK 419 (747)
Q Consensus 345 ~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~ 419 (747)
.+++..++++..+..+++..++.+......|...+.....+.........++..++..++.+.+.......++..
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 555666677777777777777777777777777777666666666666667778888888887777777777655
No 19
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.92 E-value=0.00035 Score=84.55 Aligned_cols=150 Identities=14% Similarity=0.249 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhhh
Q 004516 67 KIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQG 146 (747)
Q Consensus 67 k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~~ 146 (747)
.+..+-+...++...+..+..++..+..+.+.++.....+..++..+...++.+..+..+-.....+++..++.+...+.
T Consensus 272 ~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 272 AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666666666666666666666555555555555555555555555555555543333
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhhcccchHHHH
Q 004516 147 WINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQL-AFKESKISSMRTLIEEYEEVLKDKERPYDEVK 225 (747)
Q Consensus 147 ~l~~~~~~~~~L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el-~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~ 225 (747)
+. ...+.++..++..+..+++.++.+.+.|...++++ ....+++.-+++.+..+..+.+.-+..+..+.
T Consensus 352 e~----------~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 352 EV----------NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 45555566666666666666666666666666655 44444444444444444444444443333333
Q ss_pred H
Q 004516 226 K 226 (747)
Q Consensus 226 ~ 226 (747)
.
T Consensus 422 ~ 422 (1074)
T KOG0250|consen 422 E 422 (1074)
T ss_pred H
Confidence 3
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.83 E-value=0.0012 Score=84.13 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHHHHhhHHHhhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 334 KECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIK 413 (747)
Q Consensus 334 ~e~~kEle~k~~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k 413 (747)
..-...++..+-+++.++..|-...++++.+.+.|..+..+++........+..+++..-+.+...+..+......+...
T Consensus 394 ~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~ 473 (1822)
T KOG4674|consen 394 SKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDL 473 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777788888899999999999999999999888888888888887777777777777777766666
Q ss_pred HHHHHHhhhhH
Q 004516 414 EREFEKRVKEF 424 (747)
Q Consensus 414 ~k~le~~~kE~ 424 (747)
.++.......+
T Consensus 474 ~renk~l~~~~ 484 (1822)
T KOG4674|consen 474 ERENKLLEQQI 484 (1822)
T ss_pred HHHHHHHHHHH
Confidence 66555444444
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.82 E-value=0.00015 Score=91.87 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=40.1
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 39 FTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKR 118 (747)
Q Consensus 39 l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ 118 (747)
+...+..+..++..+...+.++...+.....+++....++.....++.++...+..++.++..+...+..+..++..++.
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 765 (1163)
T COG1196 686 LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEE 765 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333333344444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHH
Q 004516 119 ELQLKENEL 127 (747)
Q Consensus 119 ELe~keeeL 127 (747)
.+......+
T Consensus 766 ~l~~~~~~~ 774 (1163)
T COG1196 766 ELESLEEAL 774 (1163)
T ss_pred HHHHHHHHH
Confidence 444443333
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.79 E-value=0.0021 Score=82.01 Aligned_cols=224 Identities=16% Similarity=0.185 Sum_probs=97.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHH
Q 004516 192 QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQS-----SIKELWMKFHSEQEKLELL 266 (747)
Q Consensus 192 el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~-----~i~e~~~ele~k~~~l~~l 266 (747)
++..-...+..+...+..+...+......+....-.+..++++++........+.. ...-....|...+.++..+
T Consensus 838 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l 917 (1822)
T KOG4674|consen 838 QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDL 917 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHH
Confidence 44455556666666666777777776666666666666666666554443322221 1111112233334443333
Q ss_pred HHHHHHhHHHHHHHHH-------HHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHH
Q 004516 267 QGRVRLHENEVESLEQ-------ELDSMRKQQKKYFDDVELK----KRELNEIGKYIEELNQDPASKDKELKFVQQSIKE 335 (747)
Q Consensus 267 ee~~kele~K~k~~Ek-------eL~~~~k~l~~~~~ele~k----ek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e 335 (747)
.++++.-.+....+.. .|..++..+.+...+++.. ..++..+...+-.+..++.....++...-
T Consensus 918 ~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~----- 992 (1822)
T KOG4674|consen 918 KEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELST----- 992 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 4444444444444433 3333333333333222211 11111111112222222222222221111
Q ss_pred HHHHhhHHHhhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 336 CSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKER 415 (747)
Q Consensus 336 ~~kEle~k~~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k 415 (747)
..+..++..+++++.....++.........+-.-+..++..+......+...+..+++--.....-...|.....
T Consensus 993 -----k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~e 1067 (1822)
T KOG4674|consen 993 -----KGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLRE 1067 (1822)
T ss_pred -----cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223333344444444445555555555555555555555555445555555555544444555555555555
Q ss_pred HHHHhhhhHH
Q 004516 416 EFEKRVKEFE 425 (747)
Q Consensus 416 ~le~~~kE~e 425 (747)
.+.....++.
T Consensus 1068 e~~~~~~e~~ 1077 (1822)
T KOG4674|consen 1068 EFAKCNDELL 1077 (1822)
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.78 E-value=0.0012 Score=81.82 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=12.5
Q ss_pred HHhhHHHHHHhHHHHH
Q 004516 175 REKKVGEVQRSIEEHE 190 (747)
Q Consensus 175 kekel~~~~k~ie~~~ 190 (747)
....||.|.+++...+
T Consensus 456 ~~~~CPvCg~~l~~~~ 471 (908)
T COG0419 456 AGEKCPVCGQELPEEH 471 (908)
T ss_pred CCCCCCCCCCCCCcHH
Confidence 3457999998888777
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=0.0021 Score=78.20 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=29.5
Q ss_pred HhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 356 ECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIK 413 (747)
Q Consensus 356 ~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k 413 (747)
....++++-..+++....++......+..--+.+...+..+..++..++....+++.+
T Consensus 904 ~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L 961 (1293)
T KOG0996|consen 904 AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDL 961 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666665555555555554444444444444444444444444433333
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=0.00054 Score=81.93 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHH
Q 004516 166 KECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKK 240 (747)
Q Consensus 166 ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~ 240 (747)
++...+++...-++++..+++......+...+..+++....++.....+..-+.........|..+.+.+.....
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt 885 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT 885 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 333444444455555555666655555555555555555555555555555555555555555444444433333
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.58 E-value=0.004 Score=72.64 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhcccchHHHHHHH
Q 004516 205 TLIEEYEEVLKDKERPYDEVKKSL 228 (747)
Q Consensus 205 ~~i~e~~~EL~~KEkel~~~~~~i 228 (747)
..+..|..+|+.-++++..+...+
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444
No 27
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.48 E-value=0.0078 Score=72.33 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHH
Q 004516 192 QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFH------SEQEKLEL 265 (747)
Q Consensus 192 el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele------~k~~~l~~ 265 (747)
.|....++...++..-..+..+++.-+..+.+..+....++........|.+.+...+..-..-.. ....+++.
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls 474 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS 474 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 566666666666766666777777777777777666666665555555565555533222111111 11111111
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHhhHHHh
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKE 345 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEle~k~~ 345 (747)
+..++. .+.....-+++.+-+-|..-..++......+.++.+.+.....+++..+..+..--..+..-.+
T Consensus 475 ~~~Q~~----------~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 475 LQDQLE----------AETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 111111 1122222223333333333444444444444444455555555554433222222222222222
Q ss_pred hhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHH
Q 004516 346 ESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGL 403 (747)
Q Consensus 346 ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~l 403 (747)
+=....++|.....- ..+...|+....+++............+..+..|.+.++..+
T Consensus 545 ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334444443333 456778888888888888888777777887888887777765
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.46 E-value=0.00027 Score=74.20 Aligned_cols=63 Identities=17% Similarity=0.366 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHh
Q 004516 278 ESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEF 340 (747)
Q Consensus 278 k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEl 340 (747)
..++..|.....++.......+..++.+..++..+..+..+|.....++..+...|...+.+|
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444444444444444444444444444444444444444433
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.45 E-value=0.012 Score=71.88 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhhhh
Q 004516 361 VELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGS 433 (747)
Q Consensus 361 le~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~el~E~~i~~ 433 (747)
++.+..++....++++......+....+++.++.....+..........|......+++...++..+++.+.+
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s 808 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS 808 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444444444444444444444444444444455544444444444333
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.35 E-value=0.014 Score=68.21 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=6.5
Q ss_pred hhhhHHHHHHhHhhh
Q 004516 130 LSGSLNLKKEELCSV 144 (747)
Q Consensus 130 ~~~eLe~~eeeL~~~ 144 (747)
|+.+|+..++++...
T Consensus 114 ~k~ele~~~~q~~~~ 128 (522)
T PF05701_consen 114 WKAELESAREQYASA 128 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.35 E-value=0.013 Score=67.69 Aligned_cols=96 Identities=14% Similarity=0.209 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVL 87 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eiee 87 (747)
+...|..+.++.+.|.+....|+.+..+ +..++..++..+.........+..+........+....+.+.+..+..+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~---l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQ---LREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888444 7777777777777777766666666544444444445555555555555
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 004516 88 VGKKIEDCNGELACKKKEL 106 (747)
Q Consensus 88 le~eLeElE~ele~~k~eL 106 (747)
....|.+++.++..+....
T Consensus 218 ~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444
No 32
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.35 E-value=0.014 Score=67.92 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHhhHHHhhhhHh
Q 004516 271 RLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESIST 350 (747)
Q Consensus 271 kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEle~k~~ele~~ 350 (747)
..+..+.+.+-.+..++...+.+....+...++.-+..-+.++.+.+.-.....+|++++..+..+-.+++++...-+.-
T Consensus 495 nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen 574 (786)
T PF05483_consen 495 NKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEEN 574 (786)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 33333433444445555555666666666666666677677777666666667778888888888888888766654433
Q ss_pred HHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 004516 351 EKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFEL 426 (747)
Q Consensus 351 ~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~el 426 (747)
.+. ...++..+.+++.-....+..+.+.++.-.+.++.++..=..+.+.+..-.+.+...+-....+..|++.
T Consensus 575 ~r~---~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~ 647 (786)
T PF05483_consen 575 ARS---IECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELEN 647 (786)
T ss_pred hHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2344455555555555555556666666556666555555555555555555444444444444444433
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.19 E-value=0.027 Score=65.11 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=5.6
Q ss_pred HhhchhcCCCCC
Q 004516 528 LEQLSTVAPEIN 539 (747)
Q Consensus 528 Le~L~~~~p~i~ 539 (747)
+.+=++++|..+
T Consensus 526 i~qp~p~~~~~~ 537 (546)
T PF07888_consen 526 ISQPAPISSQHQ 537 (546)
T ss_pred eCCCCCCCCCCC
Confidence 444445555433
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.17 E-value=0.0039 Score=65.46 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASK 322 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~k 322 (747)
++.+++.|..+++..+.........+......+...+..+......+.....+|...
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555544444433
No 35
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=0.046 Score=65.90 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004516 202 SMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIK 250 (747)
Q Consensus 202 ~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~ 250 (747)
++...|..+..-|......-...+++++..+.+++.+-.+++.....|+
T Consensus 394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3444455555555554444555555566556666555555555554444
No 36
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.14 E-value=0.042 Score=64.97 Aligned_cols=32 Identities=6% Similarity=-0.154 Sum_probs=14.1
Q ss_pred HhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516 374 ESNLFQTRTIGYLKELKEKEKHFDSLKKGLED 405 (747)
Q Consensus 374 ELe~~~~~~e~~~keleele~~leslE~~le~ 405 (747)
+++.....+..+......+......++..|..
T Consensus 477 e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 477 LLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 37
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=0.03 Score=64.31 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004516 50 LDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRI 113 (747)
Q Consensus 50 l~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI 113 (747)
+..++.....+...+.....-+......-......++.++.++++.+.+++.++.+...++..|
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443444443333333444444444444445555555555555555554444444444
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.09 E-value=0.094 Score=67.26 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=10.9
Q ss_pred Hhhchh-cCCCCChHHHHHHHHHHHH
Q 004516 528 LEQLST-VAPEINAQVRDEAMKVAGE 552 (747)
Q Consensus 528 Le~L~~-~~p~i~~~vke~A~~lA~~ 552 (747)
|+.++. +.|..-..+++.+.-++..
T Consensus 968 l~~~~~~~~~~~~~~l~e~~~~~~~~ 993 (1201)
T PF12128_consen 968 LQELLDVLIPQQQQALIEQGRNIGND 993 (1201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444433 2343333355555544444
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.09 E-value=0.095 Score=67.24 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccch-hhhhhhHhhHHHHHHHHHHHHHHHhhhHHHH
Q 004516 10 EELRVAESKKEALRRSFDIARSQSNSV-PVFTGQWDDLEEHLDLTKKSLEKQSNDVDVK 67 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~r~si-~~l~~~l~~le~el~el~~~iee~~~eL~~k 67 (747)
..++.++.+.+.++.++..+.+..+.. ..+......+.+.+..++..+..+..+...+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~y 339 (1201)
T PF12128_consen 281 QEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDY 339 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443221 0023333444444444555554444433333
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.00 E-value=0.04 Score=59.81 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 10 EELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVG 89 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele 89 (747)
+..+-++..=..|...|..+...... ....-+..++.++..++..+.....+......+++....+++.+...++...
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~--~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGE--EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccc--cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34566666667777777777776322 1233455666777777777777777776666677777777777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
.....++.++..++..+........++++++..+..++.+.+..-+.....|
T Consensus 96 ~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 96 AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 7777777777777777776666666677777777777766555444333333
No 41
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.96 E-value=0.12 Score=63.95 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=7.0
Q ss_pred ccccCCccccccc
Q 004516 688 STIDYTPHALASD 700 (747)
Q Consensus 688 ~~~~~~~~~~~~~ 700 (747)
.+|.+++|.++.+
T Consensus 1173 ~eip~~fq~l~~~ 1185 (1317)
T KOG0612|consen 1173 KEIPRIFQILYAN 1185 (1317)
T ss_pred hhcchhHHHHHhh
Confidence 4455666655543
No 42
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.90 E-value=0.11 Score=61.44 Aligned_cols=41 Identities=20% Similarity=0.094 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516 271 RLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY 311 (747)
Q Consensus 271 kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e 311 (747)
+-+.....++..+....+..+.+.-..++.....++++.++
T Consensus 319 kylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk 359 (1265)
T KOG0976|consen 319 KYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK 359 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 33444444444444444444444444444444444444444
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.89 E-value=0.0047 Score=72.31 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=11.0
Q ss_pred HhhHHHHHHhHHHH
Q 004516 176 EKKVGEVQRSIEEH 189 (747)
Q Consensus 176 ekel~~~~k~ie~~ 189 (747)
...|+.|.+.++..
T Consensus 284 ~~~Cp~C~~~~~~~ 297 (562)
T PHA02562 284 GGVCPTCTQQISEG 297 (562)
T ss_pred CCCCCCCCCcCCCc
Confidence 44799999988766
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.78 E-value=0.32 Score=63.25 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=7.6
Q ss_pred hHHHHHHHhhHHHhhhh
Q 004516 332 SIKECSKEFQWKKEESI 348 (747)
Q Consensus 332 ~L~e~~kEle~k~~ele 348 (747)
.+....+++..+..++.
T Consensus 583 ~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 583 ALRQQLEQLQARIQRLA 599 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444544444444
No 45
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.77 E-value=5.4e-06 Score=101.38 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004516 385 YLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFE 425 (747)
Q Consensus 385 ~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~e 425 (747)
+...+..++.+++......+.....+....+.+.....+++
T Consensus 579 ~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ele 619 (859)
T PF01576_consen 579 LQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELE 619 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433333333333333344444444444443
No 46
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.75 E-value=0.096 Score=56.26 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhh
Q 004516 10 EELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSND 63 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~e 63 (747)
..+..++.+...++..+..+...|+. +..+...+.+.-+.++.+..+....
T Consensus 6 ~~~~E~e~K~~~lk~~~~e~~ekR~E---l~~~~~~~~ekRdeln~kvrE~~e~ 56 (294)
T COG1340 6 DKLDELELKRKQLKEEIEELKEKRDE---LRKEASELAEKRDELNAKVRELREK 56 (294)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777777777644 4444444444444444444333333
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.73 E-value=0.012 Score=68.83 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Q 004516 199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETK 234 (747)
Q Consensus 199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~ke 234 (747)
.+......+......+.....+...++.+|+..+..
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444444444444333
No 48
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.66 E-value=0.25 Score=58.62 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004516 21 ALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELA 100 (747)
Q Consensus 21 ~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele 100 (747)
.+|+-...+++.... ...+++.++..+..+..+...++..+.....++.+...++++.-.++..+..++.-...++-
T Consensus 89 iyRrdv~llEddlk~---~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKH---HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 344444445544222 44455555555555444444444444444444444333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 101 CKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 101 ~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
..-..|...-..|.+.+.++..+-.+.......++.+-+.+
T Consensus 166 ~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~ 206 (1265)
T KOG0976|consen 166 MIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKF 206 (1265)
T ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 49
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.65 E-value=0.23 Score=58.17 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDK 324 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek 324 (747)
+.........++++....+...+++-...++.++.++..-..+.++++...+++..+..
T Consensus 504 laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~ 562 (786)
T PF05483_consen 504 LAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGE 562 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666666666666555544445554444444433333
No 50
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.21 Score=57.64 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhh
Q 004516 90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSV 144 (747)
Q Consensus 90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~ 144 (747)
..++.+++..+.++.++...++-+..++..-....+.+..+..+++.+++++..+
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445455554444444444444444444444555555555554433
No 51
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.18 Score=61.68 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHH
Q 004516 15 AESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLD 51 (747)
Q Consensus 15 ~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~ 51 (747)
+...++.++.++..+++.... .-...+++..+..
T Consensus 158 lK~EYeelK~E~~kAE~~t~~---~~~kkk~I~aEkk 191 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAEETTTG---NYKKKKSIAAEKK 191 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHhh---HhhhhhHHHHHHH
Confidence 344555555555555555222 3444444444443
No 52
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.64 E-value=1.1e-05 Score=98.62 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004516 270 VRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIG 309 (747)
Q Consensus 270 ~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~ 309 (747)
...++.+.++|.+.|...+..+.....++....++...+.
T Consensus 372 ~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~ 411 (859)
T PF01576_consen 372 AAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE 411 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455555555444444444444444444433333333
No 53
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.61 E-value=0.15 Score=54.82 Aligned_cols=14 Identities=7% Similarity=0.309 Sum_probs=5.7
Q ss_pred HHHHhhHHHHHHhH
Q 004516 173 ELREKKVGEVQRSI 186 (747)
Q Consensus 173 ~~kekel~~~~k~i 186 (747)
....+++...++.+
T Consensus 141 ~~L~k~le~~~k~~ 154 (294)
T COG1340 141 KELRKELEDAKKAL 154 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.60 E-value=0.33 Score=58.42 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=4.0
Q ss_pred CCCCCCch
Q 004516 637 APTNQPDS 644 (747)
Q Consensus 637 ~~k~~p~~ 644 (747)
+|.+.|.-
T Consensus 892 ~d~~~p~~ 899 (1243)
T KOG0971|consen 892 TDSSSPYE 899 (1243)
T ss_pred CCccchHH
Confidence 45555543
No 55
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.44 Score=59.55 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHhhcccccHHHHhhhCCCCCcchHH
Q 004516 584 DGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQ 618 (747)
Q Consensus 584 d~del~~L~~~v~~~~~a~~L~~~Lgl~~k~~d~I 618 (747)
|++-+..|+..+-...-. .+.+|.+.++|++.
T Consensus 855 D~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~ 886 (908)
T COG0419 855 DEERLEKLAEILEELLSD---GRQIIIISHVEELK 886 (908)
T ss_pred CHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence 566665555444332111 34445555555554
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.53 E-value=0.37 Score=57.09 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004516 61 SNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELG 107 (747)
Q Consensus 61 ~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~ 107 (747)
...|...+.++..+...+..+...-+.-+..+..+...+..+++.+.
T Consensus 111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444443
No 57
>PRK11637 AmiB activator; Provisional
Probab=97.50 E-value=0.08 Score=60.37 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=6.3
Q ss_pred HHHhHHHHHHHHHHHH
Q 004516 270 VRLHENEVESLEQELD 285 (747)
Q Consensus 270 ~kele~K~k~~EkeL~ 285 (747)
+..+......+...|.
T Consensus 235 l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 235 LSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333444443
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.44 E-value=0.46 Score=56.18 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 91 KIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 91 eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
.+..++..+......+..+...=.....++..+...++..++.|-...-.+
T Consensus 109 ~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~ 159 (560)
T PF06160_consen 109 QLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY 159 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333333333333333333333333333333344444444444443333333
No 59
>PRK11637 AmiB activator; Provisional
Probab=97.34 E-value=0.14 Score=58.28 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 104 KELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 104 ~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
..+..+..+|...+.++..++.++...+.+|...++.+
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 60
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.75 Score=56.02 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccchh----hhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004516 6 VNISEELRVAESKKEALRRSFDIARSQSNSVP----VFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESK 81 (747)
Q Consensus 6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~----~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~l 81 (747)
..+..++++++..+.+++.+...++++...+. .+..+.+++++++..-..........+......+.+...++...
T Consensus 268 ~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I 347 (1200)
T KOG0964|consen 268 EDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKI 347 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777777644322 24445556665555544444444444444444555555555555
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 004516 82 EIELVLVGKKIEDCNGEL 99 (747)
Q Consensus 82 E~eieele~eLeElE~el 99 (747)
+..+..+..+-......+
T Consensus 348 ~Pky~~l~~ee~~~~~rl 365 (1200)
T KOG0964|consen 348 EPKYNSLVDEEKRLKKRL 365 (1200)
T ss_pred hhHHHHHHhHHHHHHHHH
Confidence 555554444333333333
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.29 E-value=0.76 Score=55.47 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 004516 162 KNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKE 197 (747)
Q Consensus 162 ~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke 197 (747)
+.+..+..++++.|..++++..+.-+.-..+++.-+
T Consensus 395 k~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 395 KQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444444444444333
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.28 E-value=0.62 Score=54.26 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 004516 158 LQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLA 194 (747)
Q Consensus 158 L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el~ 194 (747)
+...+..+..+.+++....++......+|...++++.
T Consensus 157 ~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666444
No 63
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.89 Score=55.99 Aligned_cols=188 Identities=13% Similarity=0.200 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHhhcC
Q 004516 246 QSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGK-------YIEELNQD 318 (747)
Q Consensus 246 ~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~-------e~e~~~kE 318 (747)
..++.+++.++..+.+++.+.+.++..+++..+-..-++++.+.++.....|+.-.+..+.++.- ++..++.+
T Consensus 661 k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~ 740 (1141)
T KOG0018|consen 661 KERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGE 740 (1141)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 34666666666665555556666666666666666666666666666666666666665554443 34444444
Q ss_pred chhhHHhHHHHHHhHHHH-----------------HHHhhHHHhhhhHh----------------HHhHHHhhHHHHHHH
Q 004516 319 PASKDKELKFVQQSIKEC-----------------SKEFQWKKEESIST----------------EKTIAECSKEVELKK 365 (747)
Q Consensus 319 Le~kek~Le~~~~~L~e~-----------------~kEle~k~~ele~~----------------~Kele~~~kele~Ke 365 (747)
+...+++...+.+.+|.. ..++..+..+|+.. +..++.|.+.++..+
T Consensus 741 ~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~ 820 (1141)
T KOG0018|consen 741 MKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLE 820 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHH
Confidence 444444444444444311 22333333333321 446666777777777
Q ss_pred HHHhHHHHHhhHHHhhHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhhhhH
Q 004516 366 NQFNLTQHESNLFQTRTIGYLKELKEK-EKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSI 434 (747)
Q Consensus 366 ~ql~~~~~ELe~~~~~~e~~~keleel-e~~leslE~~le~k~keLe~k~k~le~~~kE~el~E~~i~~~ 434 (747)
.+++.....-+...+.+... .+++.. +..++..+.++.+-.+.+....+++-....++...++.++-.
T Consensus 821 ~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~ 889 (1141)
T KOG0018|consen 821 KEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERK 889 (1141)
T ss_pred HhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 77766555544444444433 222221 223444555555555555555555555444554444444433
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.26 E-value=0.42 Score=51.86 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=15.8
Q ss_pred HHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHH
Q 004516 24 RSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEK 59 (747)
Q Consensus 24 k~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee 59 (747)
.+|..|.++..+ +..+++.++.+=..+...+..
T Consensus 4 ~eL~~LNdRla~---YIekVr~LE~~N~~Le~~i~~ 36 (312)
T PF00038_consen 4 EELQSLNDRLAS---YIEKVRFLEQENKRLESEIEE 36 (312)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHH
Confidence 345555555333 444555555444444444433
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.16 E-value=1.3 Score=55.40 Aligned_cols=6 Identities=33% Similarity=0.877 Sum_probs=3.0
Q ss_pred HHHhhh
Q 004516 553 WKKKMR 558 (747)
Q Consensus 553 WK~ki~ 558 (747)
|+.-..
T Consensus 1122 ~~~~~V 1127 (1317)
T KOG0612|consen 1122 WKRIYV 1127 (1317)
T ss_pred hheeEE
Confidence 555444
No 66
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.15 E-value=0.82 Score=54.28 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516 265 LLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY 311 (747)
Q Consensus 265 ~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e 311 (747)
.+=.||-++....++-..++...-.....-.++++....++.+.-..
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v 534 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTV 534 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555666666666666666666666666666666666666655543
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.11 E-value=0.045 Score=57.36 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHH
Q 004516 21 ALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEK 59 (747)
Q Consensus 21 ~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee 59 (747)
.+..++..+.-.+.+ ....++.+..++..+++.+..
T Consensus 14 ~lD~e~~rl~~~~~~---~~~~l~k~~~e~e~~~~~~~~ 49 (239)
T COG1579 14 KLDLEKDRLEPRIKE---IRKALKKAKAELEALNKALEA 49 (239)
T ss_pred HHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333 333333333333333333333
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.17 Score=60.93 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHH
Q 004516 161 LKNLIKECCDEIELREKKVGEVQRSIE 187 (747)
Q Consensus 161 ~~~~~ee~~~El~~kekel~~~~k~ie 187 (747)
.+.++.....||+.++.++...+.++.
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555543
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.97 E-value=1.7 Score=53.74 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhH
Q 004516 199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLE 236 (747)
Q Consensus 199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele 236 (747)
.+..+.+.+.+-..+...-|+.+...-..+..+.+.++
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666665555555444433
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.4 Score=52.54 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=5.0
Q ss_pred HHHHHHHHhh
Q 004516 548 KVAGEWKKKM 557 (747)
Q Consensus 548 ~lA~~WK~ki 557 (747)
-+|..|-..+
T Consensus 780 ~~ad~~~~~~ 789 (1118)
T KOG1029|consen 780 VVADTKNESA 789 (1118)
T ss_pred eecccccchh
Confidence 4555555443
No 71
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.95 E-value=1.7 Score=53.30 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=10.2
Q ss_pred hHHHHHhhCCCchhHHHH
Q 004516 481 KVFDTIKSARDPALLVLH 498 (747)
Q Consensus 481 e~~~AL~~a~DPaklVLd 498 (747)
..+.|+..|+-|+.+--+
T Consensus 773 ~~~~~rq~asrq~ales~ 790 (1195)
T KOG4643|consen 773 RQKVARQNASRQQALESN 790 (1195)
T ss_pred cchHHHhhccchhhhhhc
Confidence 345566666666664433
No 72
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.86 E-value=0.0013 Score=79.53 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=17.5
Q ss_pred CCCCCcchHHHHHhhcCCcccee
Q 004516 609 GFADKEPGLQCSTTAEGRSAPSM 631 (747)
Q Consensus 609 gl~~k~~d~I~~LI~~g~~i~Av 631 (747)
+|...+++.|+.-|...++|||.
T Consensus 687 ~~~~~~~~~i~~~v~~~~siP~F 709 (722)
T PF05557_consen 687 EFSPELEDLIEFWVEERNSIPAF 709 (722)
T ss_dssp CCHHCTHHHHHHHTTTS--HHHH
T ss_pred chHHHHHHHHHHHHHcCCChhHH
Confidence 46678889999999999999985
No 73
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.60 E-value=1.5 Score=49.55 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLK 123 (747)
Q Consensus 72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~k 123 (747)
.....+...++..|.+.+.++..++..+-....++..+...|++....+..+
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444433
No 74
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.59 E-value=2.5 Score=50.28 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHHHHhh
Q 004516 198 SKISSMRTLIEEYEEVLKD 216 (747)
Q Consensus 198 ~~l~~~e~~i~e~~~EL~~ 216 (747)
.++..++..+.++..+++.
T Consensus 461 ~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 461 EEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444443
No 75
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.59 E-value=3.3 Score=51.53 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=13.4
Q ss_pred HHHHHHHHhHHHHHhhHHHhhHHhHHHHH
Q 004516 361 VELKKNQFNLTQHESNLFQTRTIGYLKEL 389 (747)
Q Consensus 361 le~Ke~ql~~~~~ELe~~~~~~e~~~kel 389 (747)
.+.++.+|+....+|.-+.+.++.....+
T Consensus 1719 y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1719 YLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 76
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.54 E-value=4 Score=51.93 Aligned_cols=140 Identities=25% Similarity=0.208 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHhhhhHHHHHHhHhhhhhhhhhh
Q 004516 80 SKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRE--------LQLKENELNSLSGSLNLKKEELCSVQGWINKC 151 (747)
Q Consensus 80 ~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~E--------Le~keeeL~e~~~eLe~~eeeL~~~~~~l~~~ 151 (747)
.++..+..++..+.++++.....+.....+......+... +..+..-+..-..........|....+++.+.
T Consensus 571 ~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~ 650 (1294)
T KOG0962|consen 571 SLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEKA 650 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333333333 33333334333444444445555555555333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH-HH-HHHHhhhhhHHHHHHHHHHHHhhcccc
Q 004516 152 QANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEK-QL-AFKESKISSMRTLIEEYEEVLKDKERP 220 (747)
Q Consensus 152 ~~~~~~L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~-el-~~ke~~l~~~e~~i~e~~~EL~~KEke 220 (747)
....+-|+.+..-|+++...... ...||.|.+..+.... +| ..-...+...-+.+.+....|...++.
T Consensus 651 rk~l~~lq~~s~~Y~k~Ie~~~~-~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~ 720 (1294)
T KOG0962|consen 651 RKDLAMLQGRSALYRKFIEIACR-SHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSKEEKI 720 (1294)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhh-ccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 33444556678888888777776 6678999888765544 11 111233444445555555555555544
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.54 E-value=4.8 Score=52.85 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhh
Q 004516 12 LRVAESKKEALRRSFDIARSQSNSVPVF 39 (747)
Q Consensus 12 l~~~e~~~~~lrk~l~~Le~~r~si~~l 39 (747)
+..++.-+...|.++..+..-.+....+
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlF 259 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLF 259 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4455555556666666666555553333
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.46 E-value=1.4 Score=53.24 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516 220 PYDEVKKSLILCETKLESEKKELELTQSSIKEL 252 (747)
Q Consensus 220 el~~~~~~ie~~~kele~k~~El~~~~~~i~e~ 252 (747)
.|-+.+.+++.....+..++.||..+..+|++.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666655555544
No 79
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.41 E-value=0.00081 Score=81.28 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004516 183 QRSIEEHEKQLAFKESKISSMRTLIEEYEEVL 214 (747)
Q Consensus 183 ~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL 214 (747)
...|+..++++..-+.++..+...+..+.-++
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~ 393 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEESRRADKLEFEN 393 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333333333333333333333
No 80
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.40 E-value=0.0041 Score=75.38 Aligned_cols=30 Identities=7% Similarity=-0.028 Sum_probs=17.4
Q ss_pred CcccccCChHHHHHHHHHhhchhhhhhhhHHH
Q 004516 453 DPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFD 484 (747)
Q Consensus 453 ~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~ 484 (747)
+-++.++++..-..++.. ..+..|+.|.-.
T Consensus 548 rVL~lr~NP~~~~~~~k~--~~l~~L~~En~~ 577 (722)
T PF05557_consen 548 RVLHLRDNPTSKAEQIKK--STLEALQAENED 577 (722)
T ss_dssp EEEEESS-HHHHHHHHHH--HHHHHHHHHHHH
T ss_pred eeeeeCCCcHHHHHHHHH--HHHHHHHHHHHH
Confidence 445666776666666643 456777776443
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.40 E-value=2.9 Score=48.87 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 23 RRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQS---------------NDVDVKIRLLDQRAKEIESKEIELVL 87 (747)
Q Consensus 23 rk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~---------------~eL~~k~~elEe~~kele~lE~eiee 87 (747)
+++|..|.++... +...++-++.+=..+...+..+. .++......|++..++...++.+|..
T Consensus 41 K~El~~LNDRLA~---YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 41 KKELQELNDRLAV---YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666333 44455555544443333333321 23333333445555555555555555
Q ss_pred HHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 88 VGKKIEDCNGELACKKKELG-------LVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 88 le~eLeElE~ele~~k~eL~-------~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
++.++.++...+.+..+... .....+..+++++.....++..+..++...+.+.
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en 178 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN 178 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544444444433333 3333444444444444444333333333333333
No 82
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.38 E-value=4.9 Score=51.17 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHH
Q 004516 6 VNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLE 58 (747)
Q Consensus 6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~ie 58 (747)
..++.++-.+..++.++++.+.+++.....+..+..+...+..+++.+...+.
T Consensus 240 ~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~ 292 (1294)
T KOG0962|consen 240 SELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKIL 292 (1294)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555556666666666666666665555544444444444444444444443
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=4 Score=48.88 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516 204 RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKEL 252 (747)
Q Consensus 204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~ 252 (747)
-..+..+...|..-.-.+..++..|+...+..+..-.|+.-++.+|.++
T Consensus 450 n~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 450 NFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555555555555544444444444444333
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.18 E-value=0.52 Score=45.86 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 004516 13 RVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQR---AKEIESKEIELVLVG 89 (747)
Q Consensus 13 ~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~---~kele~lE~eieele 89 (747)
..+-.+.+.+...+..++++... +..++.++...+..+...++.+...+......+++. ....+.+...|.-++
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~---~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LE 86 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQ---KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHH
Confidence 33334444444444444444222 333444444333333334333333333333322222 233445666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516 90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC 142 (747)
Q Consensus 90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~ 142 (747)
.++...+..+......+..+....+.++.....++.+...|...++....++.
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666777777777777777666666666554
No 85
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.10 E-value=0.0015 Score=79.02 Aligned_cols=6 Identities=17% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHh
Q 004516 466 FLLNQH 471 (747)
Q Consensus 466 ~~~~~~ 471 (747)
.|+...
T Consensus 688 sfL~rq 693 (713)
T PF05622_consen 688 SFLARQ 693 (713)
T ss_dssp ------
T ss_pred cHHHHh
Confidence 444433
No 86
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.08 E-value=5 Score=48.43 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004516 396 FDSLKKGLEDRLQDLEIK 413 (747)
Q Consensus 396 leslE~~le~k~keLe~k 413 (747)
...++..+...+..|-.+
T Consensus 504 ~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 504 LQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344555556666666553
No 87
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.08 E-value=4.3 Score=47.69 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHH
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE 47 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le 47 (747)
.+.|.+.+..+++.++.++..++.....|..+...++.++
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~ 158 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLE 158 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH
Confidence 4556666666666666666666655555444443333333
No 88
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.06 E-value=2 Score=43.92 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~ 32 (747)
+.++|..+..++++++++...|+.-
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666665555555443
No 89
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.05 E-value=5.1 Score=48.31 Aligned_cols=47 Identities=30% Similarity=0.360 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 75 AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQ 121 (747)
Q Consensus 75 ~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe 121 (747)
..+++.++.++.....++..+..++..++.++..+..++..++..+.
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333333
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.03 E-value=0.75 Score=44.79 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 75 AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKREL 120 (747)
Q Consensus 75 ~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~EL 120 (747)
...++.++..+..+..+....+.++.+++..+..++.+++.++..+
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433333333333333333
No 91
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=5.3 Score=48.06 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=39.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004516 5 TVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIE 84 (747)
Q Consensus 5 ~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~e 84 (747)
+.++++.+-.+...+++++............ ...+..++..+.+.+.+....+......+-+....+..+...
T Consensus 229 ~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-------~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~ 301 (698)
T KOG0978|consen 229 VIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-------FSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQ 301 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3566666777777777777776666655332 344444555555555555555544333333333333333333
Q ss_pred HH
Q 004516 85 LV 86 (747)
Q Consensus 85 ie 86 (747)
..
T Consensus 302 ~~ 303 (698)
T KOG0978|consen 302 HS 303 (698)
T ss_pred HH
Confidence 33
No 92
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.91 E-value=5.3 Score=47.35 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=6.9
Q ss_pred HhhHHHHHHhHHHHHH
Q 004516 176 EKKVGEVQRSIEEHEK 191 (747)
Q Consensus 176 ekel~~~~k~ie~~~~ 191 (747)
.+.+|..-.+|..+..
T Consensus 221 ~~~~P~ql~eL~~gy~ 236 (560)
T PF06160_consen 221 QKEFPDQLEELKEGYR 236 (560)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3344444444444444
No 93
>PRK09039 hypothetical protein; Validated
Probab=95.91 E-value=0.91 Score=50.45 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004516 10 EELRVAESKKEALRRSFDI 28 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~ 28 (747)
.++.-.+.++..+..+|..
T Consensus 46 ~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 46 REISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3343444444444444433
No 94
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.72 E-value=6.1 Score=46.53 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHH
Q 004516 169 CDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELEL 244 (747)
Q Consensus 169 ~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~ 244 (747)
...+...++.+...+..|.....++- +....|-++...+-.++.-++.+++.....+...+.+.+.
T Consensus 195 ~~q~~~le~ki~~lq~a~~~t~~el~----------~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~ 260 (629)
T KOG0963|consen 195 QEQLEELEKKISSLQSAIEDTQNELF----------DLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQ 260 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH----------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666655333 3333344444444444444444444444444444444433
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=7.2 Score=47.17 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 004516 286 SMRKQQKKYFDDVELKKRELNEIGKYIEELNQDP 319 (747)
Q Consensus 286 ~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kEL 319 (747)
+....-++..-.+..-++....+.+.++++..-.
T Consensus 908 s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 908 SNKQEQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred chhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 3333333333444444444444444333333333
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.64 E-value=5.3 Score=45.33 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhH
Q 004516 72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSL 134 (747)
Q Consensus 72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eL 134 (747)
....++++.++..+.........++..+.+.+.++..+...|....+++..++.+|......|
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 444455555555555555555555555555555555555554444444444444444443333
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=2.1 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=15.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhcccc
Q 004516 195 FKESKISSMRTLIEEYEEVLKDKERP 220 (747)
Q Consensus 195 ~ke~~l~~~e~~i~e~~~EL~~KEke 220 (747)
.-..++....+.+.+..+.+.+.+..
T Consensus 859 ~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 859 NLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred HHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 33444555567777777777666633
No 98
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.33 E-value=6.1 Score=44.00 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=6.8
Q ss_pred cCccccccccCCC
Q 004516 702 LNRSSLATQHGPG 714 (747)
Q Consensus 702 ~~~~~~~~~~~~~ 714 (747)
|.+.-.|.+|||-
T Consensus 483 lr~R~~a~r~~~~ 495 (499)
T COG4372 483 LRRRGWAPRHAPR 495 (499)
T ss_pred hheeeecccCCcc
Confidence 4445555556553
No 99
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.18 E-value=4.2 Score=41.36 Aligned_cols=46 Identities=9% Similarity=0.123 Sum_probs=20.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY 311 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e 311 (747)
++..++.+..|++..+..-+...+++..-.+++..++..+.....+
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 4444555555554444444444444444444444444444333333
No 100
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=9.1 Score=44.39 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 75 AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQL 122 (747)
Q Consensus 75 ~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~ 122 (747)
..+......++.=+...+.+.+..++.....+....+.|-.+...|..
T Consensus 235 ~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~ 282 (654)
T KOG4809|consen 235 LAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQR 282 (654)
T ss_pred HHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 334444444444455555566666666666666666666665555554
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.99 E-value=12 Score=45.50 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=20.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY 311 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e 311 (747)
++.++..++.+...+-..|...+.++.....++.....++..+...
T Consensus 270 L~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~ 315 (717)
T PF09730_consen 270 LKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQ 315 (717)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.86 E-value=5.4 Score=40.90 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHHHHHHHHhhhH
Q 004516 43 WDDLEEHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 43 l~~le~el~el~~~iee~~~eL 64 (747)
+..+...+.++...+.++..+.
T Consensus 14 i~~L~n~l~elq~~l~~l~~EN 35 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKEN 35 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 103
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.82 E-value=20 Score=47.18 Aligned_cols=31 Identities=6% Similarity=0.063 Sum_probs=11.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004516 82 EIELVLVGKKIEDCNGELACKKKELGLVQKR 112 (747)
Q Consensus 82 E~eieele~eLeElE~ele~~k~eL~~le~e 112 (747)
...+.....++......+......+......
T Consensus 799 ~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~ 829 (1353)
T TIGR02680 799 ERQAESAERELARAARKAAAAAAAWKQARRE 829 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.61 E-value=4.2 Score=39.54 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=45.5
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 39 FTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKR 118 (747)
Q Consensus 39 l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ 118 (747)
....|++.+.+-..+.+.+..+..++.......+....+.+...+++..++.++..+...+..+..++..+..+...+..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555444444455555555555555555555555555555555555555444444444
Q ss_pred HHHHHHHHHh
Q 004516 119 ELQLKENELN 128 (747)
Q Consensus 119 ELe~keeeL~ 128 (747)
.+...+.++.
T Consensus 88 ~lq~~q~kv~ 97 (140)
T PF10473_consen 88 ELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 105
>PRK09039 hypothetical protein; Validated
Probab=94.55 E-value=6.5 Score=43.76 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=7.9
Q ss_pred CCCchhHHHHHhhccCC
Q 004516 489 ARDPALLVLHAISGFYP 505 (747)
Q Consensus 489 a~DPaklVLdai~gf~~ 505 (747)
..+|.++.....+.+.|
T Consensus 304 Gi~~~ri~~~G~G~~~P 320 (343)
T PRK09039 304 GVPADRLAAAGFGEFQP 320 (343)
T ss_pred CCCHHHeEEEEeCCcCc
Confidence 44555655433333333
No 106
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.51 E-value=11 Score=42.98 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 73 QRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 73 e~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
++...+..+...+..+......++.-...++..+...-+.+..++.++..+++++..++.........+
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344444444444444444444444444444444444555555555555555544444444444333
No 107
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.36 E-value=11 Score=42.30 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004516 7 NISEELRVAESKKEALRRSFDIARSQSNS 35 (747)
Q Consensus 7 ~l~~el~~~e~~~~~lrk~l~~Le~~r~s 35 (747)
.+..++..++.++..++..+..+....+.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567777777777777777766665443
No 108
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.35 E-value=16 Score=43.98 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=32.4
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHH
Q 004516 2 DNCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLE 58 (747)
Q Consensus 2 ~~~~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~ie 58 (747)
|.+.++|..+-..+..+...+.-++..+..+... ....+..++..+..++..+.
T Consensus 14 d~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~---~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 14 DQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEH---DISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence 4556666666666666666666666666666444 55555555555555544443
No 109
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.08 E-value=17 Score=43.36 Aligned_cols=33 Identities=18% Similarity=0.032 Sum_probs=19.7
Q ss_pred HHhhhCCCCCCChhHHHHHHHHhhccc-ccHHHH
Q 004516 573 LLAAYRLAPAFDGEELESLLRIVAQHR-QTPKLR 605 (747)
Q Consensus 573 lla~fgl~s~fd~del~~L~~~v~~~~-~a~~L~ 605 (747)
.|--||=..+-..+-=++|++.-..++ |..+|.
T Consensus 923 ~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl 956 (961)
T KOG4673|consen 923 ALQMYGEKDEELEELRLDLVDLKEMYKEQIDELL 956 (961)
T ss_pred HHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444588777666666667776665544 344443
No 110
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.01 E-value=17 Score=43.26 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHH
Q 004516 199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLE--------LLQGRV 270 (747)
Q Consensus 199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~--------~lee~~ 270 (747)
.++.-...+..+..-......-++..++.+- ++-..++.+.......++.++..|..++..-. -|.+.+
T Consensus 538 ~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq---k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei 614 (961)
T KOG4673|consen 538 YYSNSRALAAALEAQALAEQATNDEARSDLQ---KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEI 614 (961)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555555555331 12222233443333444445444443333221 244555
Q ss_pred HHhHHHHHHHH------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004516 271 RLHENEVESLE------------------QELDSMRKQQKKYFDDVELKKRELNEIG 309 (747)
Q Consensus 271 kele~K~k~~E------------------keL~~~~k~l~~~~~ele~kek~~e~~~ 309 (747)
..|...+...| ..++.++..+..+-..|+..++.+....
T Consensus 615 ~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL 671 (961)
T KOG4673|consen 615 EDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERL 671 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 55544444443 2566666666666666666665554443
No 111
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.92 E-value=22 Score=44.20 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 004516 186 IEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCET 233 (747)
Q Consensus 186 ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~k 233 (747)
+..++.+|.....+.. .....+..+...+..+.+.++...+
T Consensus 176 ll~~h~eL~~lr~~e~-------~Le~~~~~~~~~l~~L~~~~~~l~k 216 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEK-------SLEDKLTTKTEKLNRLEDEIDKLEK 216 (1072)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555665665543333 3333334444444444444444333
No 112
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.70 E-value=9.7 Score=44.15 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~ 32 (747)
++.++..++.+++....++..+..+
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555443
No 113
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=22 Score=42.96 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=10.0
Q ss_pred hHhhHHHHHHHHHHHHHHHhhhH
Q 004516 42 QWDDLEEHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 42 ~l~~le~el~el~~~iee~~~eL 64 (747)
.|.+...++..++.+.......+
T Consensus 287 ~~k~t~~~~~~lr~~~~s~~~~~ 309 (698)
T KOG0978|consen 287 ELKDTESDNLKLRKQHSSAADSL 309 (698)
T ss_pred HHhcccchHHHHHHHHHHHHhhc
Confidence 33334444444444444444444
No 114
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.46 E-value=19 Score=41.92 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=35.1
Q ss_pred hhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 347 SISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEI 412 (747)
Q Consensus 347 le~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~ 412 (747)
|.++...+......++....-+......|+...+.+..+.......++++.++++.=-.-.+.+..
T Consensus 356 L~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~ 421 (570)
T COG4477 356 LKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLER 421 (570)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555566666666666666666666666666655543333333333
No 115
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.38 E-value=21 Score=42.07 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=10.8
Q ss_pred hhhhcccCcccccCChHHHHHHH
Q 004516 446 LLQAKTEDPEKLTSSGRYLQFLL 468 (747)
Q Consensus 446 ~~~~~~l~~~c~~Md~~gL~~~~ 468 (747)
.++++.++.----=+|+..+.|-
T Consensus 209 ~lp~d~~kgriigreGrnir~~e 231 (514)
T TIGR03319 209 NLPNDEMKGRIIGREGRNIRALE 231 (514)
T ss_pred EcCChhhhccccCCCcchHHHHH
Confidence 34433443322333566666663
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.34 E-value=5.4 Score=43.51 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhH-hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004516 6 VNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQW-DDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIE 84 (747)
Q Consensus 6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l-~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~e 84 (747)
+.+..+|+.++.+-..||.+-..|...-..+..-..++ .+-=.++..++..+..+..+|..+..+......++..+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555555555555554433322111111 11113444555555555555544444444444444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 85 LVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 85 ieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
+-++...+..+--+-+.+...+...+..=..+.+++..++.++.+...-|.+.++++
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333333344444444444444444444444433
No 117
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.29 E-value=11 Score=38.54 Aligned_cols=63 Identities=24% Similarity=0.176 Sum_probs=26.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHH
Q 004516 178 KVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKK 240 (747)
Q Consensus 178 el~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~ 240 (747)
++++.-+.|.....+|+..+.....-+..+.++.+++...-.-+..+...-+...-+++.++.
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~ 144 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEE 144 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHH
Confidence 333444444444444444433333334445555555555444444444433333333333333
No 118
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.16 E-value=27 Score=42.86 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 004516 569 GFLHLLAAYRLAPAFDGEELESLLRIVA 596 (747)
Q Consensus 569 gFL~lla~fgl~s~fd~del~~L~~~v~ 596 (747)
.=.|+||+=.+...|+.--+-+|=....
T Consensus 879 sTaQLVaASrVKA~k~S~~ld~L~~ask 906 (980)
T KOG0980|consen 879 STAQLVAASRVKADKDSKKLDALEVASK 906 (980)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 3456667767777776666666655443
No 119
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.13 E-value=27 Score=42.62 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 004516 566 EVLGFLHLLAAYRLAPAFDGEELESLLRI 594 (747)
Q Consensus 566 ea~gFL~lla~fgl~s~fd~del~~L~~~ 594 (747)
||..|--+=|-|.- ..|+|..-++-
T Consensus 655 DAATFsSlRamFa~----RCdEYvtQlde 679 (717)
T PF09730_consen 655 DAATFSSLRAMFAA----RCDEYVTQLDE 679 (717)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 77777776666643 34454444433
No 120
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.10 E-value=14 Score=41.29 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516 102 KKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC 142 (747)
Q Consensus 102 ~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~ 142 (747)
++.++..+..++..++.++...+..+...+..+....+.+.
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443
No 121
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.01 E-value=4.4 Score=49.59 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 004516 168 CCDEIELREKKVGEVQRSIEEHEKQLAFK 196 (747)
Q Consensus 168 ~~~El~~kekel~~~~k~ie~~~~el~~k 196 (747)
...||..+=++|.+||+-|..-.++|+.-
T Consensus 731 qe~EiaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 731 QEKEIAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35688888889999999999998887743
No 122
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.95 E-value=4.7 Score=46.28 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=89.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhh-hhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004516 6 VNISEELRVAESKKEALRRSFDIARSQSNSVPVFT-GQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIE 84 (747)
Q Consensus 6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~-~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~e 84 (747)
+-|+..|+.++.+-..+|.+-.-+.-+---+..-. .-|.....++.+++..+....+.|..+..++.....+...+..+
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665555555444443311111111 12334456666777777777777777777777777777777777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhh
Q 004516 85 LVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSV 144 (747)
Q Consensus 85 ieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~ 144 (747)
|-++..++..+.-+-+.+..-|......=+.+++++...+.+..+....+++.+++|..+
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777788777777777777777777777543
No 123
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.86 E-value=30 Score=42.52 Aligned_cols=92 Identities=21% Similarity=0.184 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Q 004516 155 QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETK 234 (747)
Q Consensus 155 ~~~L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~ke 234 (747)
++.++..++.|.+...+--....+..+.+++++.........+.++.-..+.+.++..+....+.+++...+.++..+.+
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444444444444444444445555555444443333333333334444444444444444444444444444444
Q ss_pred hHHHHHHHHHHH
Q 004516 235 LESEKKELELTQ 246 (747)
Q Consensus 235 le~k~~El~~~~ 246 (747)
+.....+++..+
T Consensus 503 l~~l~~e~~~lq 514 (980)
T KOG0980|consen 503 LALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 124
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.60 E-value=14 Score=38.20 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=27.6
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHH
Q 004516 170 DEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKK 226 (747)
Q Consensus 170 ~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~ 226 (747)
..|+.+-.++...++.....-. .-...|.-.+-.+..+...|+.|.++-+++-+
T Consensus 143 ekL~~ANeei~~v~~~~~~e~~---aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 143 EKLEKANEEIAQVRSKHQAELL---ALQASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544433333 22233444455666666667777666655543
No 125
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.36 E-value=18 Score=38.78 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 004516 238 EKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDD 297 (747)
Q Consensus 238 k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~e 297 (747)
.+++|+++..+|.+...++.+..++++..+..++.+..+...++..|...+..+.++.+-
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445545455555555555555555555555444444444
No 126
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.33 E-value=20 Score=39.33 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=17.1
Q ss_pred HhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHH
Q 004516 352 KTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELK 390 (747)
Q Consensus 352 Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~kele 390 (747)
|+-..|..+.+.-...|-....+.......+..+....+
T Consensus 258 KE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 258 KENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444444444444444444333333
No 127
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.27 E-value=3.8 Score=38.84 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=28.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHH
Q 004516 5 TVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE 47 (747)
Q Consensus 5 ~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le 47 (747)
.+++++.|+-++.++..++.++..+...+.. +..++-.+-
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~---l~~Eiv~l~ 57 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDE---LREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4677888888888888888888888877666 444444443
No 128
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.97 E-value=9.4 Score=40.75 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 004516 11 ELRVAESKKEALRRSFDIARSQSNS 35 (747)
Q Consensus 11 el~~~e~~~~~lrk~l~~Le~~r~s 35 (747)
.|-.....+..++.+...+..+.+.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555333
No 129
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.78 E-value=8.7 Score=47.08 Aligned_cols=9 Identities=22% Similarity=0.424 Sum_probs=3.2
Q ss_pred HhhHHHHHH
Q 004516 43 WDDLEEHLD 51 (747)
Q Consensus 43 l~~le~el~ 51 (747)
+.++..++.
T Consensus 239 L~~l~~ql~ 247 (754)
T TIGR01005 239 LAELNTELS 247 (754)
T ss_pred HHHHHHHHH
Confidence 333333333
No 130
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.62 E-value=24 Score=38.72 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=34.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhH
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKEL 326 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~L 326 (747)
+..++..+..|-..|+..|..-..-+.++-.+.+...+.+..+.++-.......+.-..-|
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4456666666666666666666666666666666666665555555443333333333333
No 131
>PRK12704 phosphodiesterase; Provisional
Probab=91.60 E-value=34 Score=40.34 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=22.0
Q ss_pred hhhhcccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHhhCC-Cchh
Q 004516 446 LLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSAR-DPAL 494 (747)
Q Consensus 446 ~~~~~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~~a~-DPak 494 (747)
+++++.++.----=+|+..+.|-..- .++-+-++-|.+.-.+. ||-+
T Consensus 215 ~lp~d~mkgriigreGrnir~~e~~t--gvd~iiddtp~~v~ls~~~~~r 262 (520)
T PRK12704 215 NLPNDEMKGRIIGREGRNIRALETLT--GVDLIIDDTPEAVILSGFDPIR 262 (520)
T ss_pred ecCCchhhcceeCCCcchHHHHHHHh--CCeEEEcCCCCeEEEecCChhh
Confidence 44444444333344677777774322 23344444454443333 5533
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.05 E-value=8.7 Score=38.68 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 004516 11 ELRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 11 el~~~e~~~~~lrk~l~~Le~~ 32 (747)
++.........+.+++..++..
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~ 103 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQER 103 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 133
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.99 E-value=31 Score=38.71 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 62 NDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRE 119 (747)
Q Consensus 62 ~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~E 119 (747)
.-++....+++++...+..+..++.....+....+-+.+....++.....+-...+.+
T Consensus 67 ~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~ 124 (499)
T COG4372 67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQE 124 (499)
T ss_pred hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666666666666666666665555555555444333333333
No 134
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.94 E-value=40 Score=39.99 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 004516 204 RTLIEEYEEVLKDKERPYDEVKKSLILCE 232 (747)
Q Consensus 204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~ 232 (747)
+..+..+.+++..-.+++...-..+...+
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444443
No 135
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.53 E-value=71 Score=42.14 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.4
Q ss_pred cceeee
Q 004516 628 APSMLV 633 (747)
Q Consensus 628 i~Av~~ 633 (747)
+++|.+
T Consensus 1337 ~~~V~v 1342 (1353)
T TIGR02680 1337 VDAVTV 1342 (1353)
T ss_pred CCEEEE
Confidence 344433
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.35 E-value=28 Score=40.31 Aligned_cols=17 Identities=6% Similarity=0.323 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 004516 16 ESKKEALRRSFDIARSQ 32 (747)
Q Consensus 16 e~~~~~lrk~l~~Le~~ 32 (747)
+.+...++..+...+..
T Consensus 167 ~~ql~~~~~~L~~ae~~ 183 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENR 183 (498)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 137
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.34 E-value=21 Score=35.71 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 004516 10 EELRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~ 32 (747)
.++..++.+.-.++..+..++..
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~q 28 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQ 28 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.06 E-value=8.5 Score=45.30 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 004516 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEHE 190 (747)
Q Consensus 159 ~~~~~~~ee~~~El~~kekel~~~~k~ie~~~ 190 (747)
..+...++....+|..+.+.+++..+.++..+
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555544544444444433
No 139
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.00 E-value=38 Score=38.56 Aligned_cols=23 Identities=0% Similarity=0.089 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 004516 10 EELRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~ 32 (747)
..|..++.++.....++.....+
T Consensus 178 ~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 178 QQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.92 E-value=6 Score=43.53 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516 73 QRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC 142 (747)
Q Consensus 73 e~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~ 142 (747)
+...++..++.+..++.+++..++.+...++.+-...-.....+.-++....++...+...+......+.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333444444444444444443
No 141
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.89 E-value=35 Score=37.63 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004516 206 LIEEYEEVLKDKERPYDEVKKSLILC-ETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQEL 284 (747)
Q Consensus 206 ~i~e~~~EL~~KEkel~~~~~~ie~~-~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL 284 (747)
.+..+...|...-..+..+...++.| ..+|+....+|......|...-.++...+.++..+.+.++.+..+...+..++
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555 44455555555554444444444444444444444555555555555555554
Q ss_pred HHHHHhHH
Q 004516 285 DSMRKQQK 292 (747)
Q Consensus 285 ~~~~k~l~ 292 (747)
...++.++
T Consensus 261 ~e~~~~~~ 268 (325)
T PF08317_consen 261 AEAEKIRE 268 (325)
T ss_pred HHHHHHHH
Confidence 44444433
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.52 E-value=6.3 Score=43.38 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 004516 17 SKKEALRRSFDIARSQ 32 (747)
Q Consensus 17 ~~~~~lrk~l~~Le~~ 32 (747)
.+++.+.++...+...
T Consensus 16 ~~~~~~~~E~~~Y~~f 31 (314)
T PF04111_consen 16 KQLEQAEKERDTYQEF 31 (314)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444433333
No 143
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.38 E-value=12 Score=39.42 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKE 124 (747)
Q Consensus 90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~ke 124 (747)
.+++.+..+....-++|..+...|+.+++.+...+
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444443333
No 144
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.22 E-value=31 Score=36.99 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhH
Q 004516 19 KEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 19 ~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL 64 (747)
++.|...+..|..++.. --.+++.++..+..-+.+.+....++
T Consensus 20 IqelE~QldkLkKE~qQ---rQfQleSlEAaLqKQKqK~e~ek~e~ 62 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQ---RQFQLESLEAALQKQKQKVEEEKNEY 62 (307)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444 34456666665655555555555555
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.86 E-value=37 Score=36.48 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=3.6
Q ss_pred HHHHHHhHHH
Q 004516 179 VGEVQRSIEE 188 (747)
Q Consensus 179 l~~~~k~ie~ 188 (747)
|+..+..+..
T Consensus 160 Le~kq~~l~~ 169 (265)
T COG3883 160 LEEKQAALED 169 (265)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 146
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=4.9 Score=47.19 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhhhhHHHHHHhHhhh
Q 004516 68 IRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGE---CKRELQLKENELNSLSGSLNLKKEELCSV 144 (747)
Q Consensus 68 ~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~---le~ELe~keeeL~e~~~eLe~~eeeL~~~ 144 (747)
...+......++.++.+++.++..+.++.++++.++.++..+..++.. ...++...+.++..++++|.++..++..+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555444444332 23333344455555555555555555544
Q ss_pred hhhh
Q 004516 145 QGWI 148 (747)
Q Consensus 145 ~~~l 148 (747)
.+.+
T Consensus 501 ~~~l 504 (652)
T COG2433 501 ERKL 504 (652)
T ss_pred HHHH
Confidence 4333
No 147
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.45 E-value=24 Score=33.75 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 47 EEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELV 86 (747)
Q Consensus 47 e~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eie 86 (747)
..++..+..........+.....++.............|+
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 148
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.35 E-value=29 Score=34.67 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 70 LLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 70 elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
+++...-+...+...|++...++..+...+...-.-+.-++..+.....+......++......+...++++
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l 114 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREEL 114 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555444444443333344444444444444444444444444444344333
No 149
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.33 E-value=34 Score=35.47 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004516 383 IGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRV 421 (747)
Q Consensus 383 e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~ 421 (747)
..+...+...+-++.|++..++.+.++.+.+-+-+|.+.
T Consensus 164 ~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 164 LALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666777776666666666665555543
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.99 E-value=6.3 Score=40.14 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhH
Q 004516 48 EHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 48 ~el~el~~~iee~~~eL 64 (747)
.++..+.........+|
T Consensus 81 ~ELael~r~~~el~~~L 97 (194)
T PF08614_consen 81 EELAELYRSKGELAQQL 97 (194)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33333333333333333
No 151
>PRK10869 recombination and repair protein; Provisional
Probab=87.41 E-value=70 Score=38.02 Aligned_cols=31 Identities=10% Similarity=0.047 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 004516 203 MRTLIEEYEEVLKDKERPYDEVKKSLILCET 233 (747)
Q Consensus 203 ~e~~i~e~~~EL~~KEkel~~~~~~ie~~~k 233 (747)
.+..+.++..++....+++...-..+...++
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666655555555555555555443
No 152
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.19 E-value=86 Score=38.77 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=15.2
Q ss_pred HHhhHHHhhHHhHHHHHHHHHHHHHHH
Q 004516 373 HESNLFQTRTIGYLKELKEKEKHFDSL 399 (747)
Q Consensus 373 ~ELe~~~~~~e~~~keleele~~lesl 399 (747)
.||..-..++.+|.+=+-.|-++|.++
T Consensus 733 ~EiaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 733 KEIAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666665555555555443
No 153
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.95 E-value=54 Score=36.19 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 004516 13 RVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 13 ~~~e~~~~~lrk~l~~Le~~ 32 (747)
+++...+..-|+-+..++.+
T Consensus 78 ~EL~~~I~egr~~~~~~E~~ 97 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEE 97 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 154
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.15 E-value=35 Score=33.19 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhhhhh
Q 004516 70 LLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWI 148 (747)
Q Consensus 70 elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~~~l 148 (747)
..+.-....+.+...+..+..++..+...++.++.++...+.++...+.....+...+......+....+++.+++..+
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555555556555555655666665444333
No 155
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.75 E-value=43 Score=35.65 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516 79 ESKEIELVLVGKKIEDCNGELACKKKELGL 108 (747)
Q Consensus 79 e~lE~eieele~eLeElE~ele~~k~eL~~ 108 (747)
..+...+...+.++......+..++..+..
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.68 E-value=24 Score=33.50 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=10.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004516 82 EIELVLVGKKIEDCNGELACKKKELGLVQK 111 (747)
Q Consensus 82 E~eieele~eLeElE~ele~~k~eL~~le~ 111 (747)
+.++.++..+...+-.-+.++.+++.+++.
T Consensus 74 ~~el~~l~~ry~t~LellGEK~E~veEL~~ 103 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGEKSEEVEELRA 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 333333333333333333333333333333
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.62 E-value=28 Score=37.00 Aligned_cols=67 Identities=21% Similarity=0.163 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516 76 KEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC 142 (747)
Q Consensus 76 kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~ 142 (747)
.....++..+.++.........+...+..++..+...+..+.........+...|+.++...+..+.
T Consensus 54 ~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 54 QKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555555566666666666666666666666777777777766666554
No 158
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.04 E-value=87 Score=36.83 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHH-HHHHHHHHHHHHHhhhHH
Q 004516 13 RVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE-EHLDLTKKSLEKQSNDVD 65 (747)
Q Consensus 13 ~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le-~el~el~~~iee~~~eL~ 65 (747)
.+++.....++..+..+...............++. +++..+.+++..+...+.
T Consensus 119 ~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 119 QELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444445555555555333333333344433332 444555665555554443
No 159
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.87 E-value=51 Score=34.04 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=41.8
Q ss_pred chhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 35 SVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIG 114 (747)
Q Consensus 35 si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~ 114 (747)
+|.+|..++++.+.++..--..|-.+..++......+......+..+...+.....+++.++.++.....+...++..+.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 34445555555554444444444444444433333334444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 004516 115 ECKRELQLKENEL 127 (747)
Q Consensus 115 ~le~ELe~keeeL 127 (747)
.++.++..++..+
T Consensus 91 ~le~El~~Lr~~l 103 (202)
T PF06818_consen 91 QLEAELAELREEL 103 (202)
T ss_pred hhHHHHHHHHHHH
Confidence 4444444444333
No 160
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.19 E-value=9.1 Score=39.71 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516 72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGL 108 (747)
Q Consensus 72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~ 108 (747)
++...+++.++.++++.+.++..++.+...+.+.+..
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555554444444444444444333333
No 161
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.62 E-value=93 Score=38.25 Aligned_cols=6 Identities=50% Similarity=0.540 Sum_probs=2.3
Q ss_pred HHHHHH
Q 004516 248 SIKELW 253 (747)
Q Consensus 248 ~i~e~~ 253 (747)
.|++.+
T Consensus 700 ~I~~~v 705 (717)
T PF10168_consen 700 EIDELV 705 (717)
T ss_pred HHHHHH
Confidence 333333
No 162
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.30 E-value=63 Score=33.11 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004516 72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRI 113 (747)
Q Consensus 72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI 113 (747)
++....+..++.....+...-..++++-..+-.++..+..+-
T Consensus 70 edLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 70 EDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 163
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.56 E-value=46 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=9.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 004516 283 ELDSMRKQQKKYFDDVELKKRELNE 307 (747)
Q Consensus 283 eL~~~~k~l~~~~~ele~kek~~e~ 307 (747)
......+.......++..+..++..
T Consensus 68 ~a~~e~k~~~~k~~ei~~l~~~l~~ 92 (126)
T PF13863_consen 68 RAEEEKKKKEEKEAEIKKLKAELEE 92 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 164
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.13 E-value=73 Score=35.85 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516 91 KIEDCNGELACKKKELGLVQKRIGECKRELQLKENELN 128 (747)
Q Consensus 91 eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~ 128 (747)
.++.+-.++...+.+++.++.+.......+......|.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~ 304 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELA 304 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33334444444444444444444333333333333333
No 165
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.99 E-value=79 Score=36.29 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=5.8
Q ss_pred HHHhHhhhhHHHHHH
Q 004516 125 NELNSLSGSLNLKKE 139 (747)
Q Consensus 125 eeL~e~~~eLe~~ee 139 (747)
+...-|...+...++
T Consensus 410 knq~vw~~kl~~~~e 424 (493)
T KOG0804|consen 410 KNQDVWRGKLKELEE 424 (493)
T ss_pred hhHHHHHHHHHHHHH
Confidence 333334444433333
No 166
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.29 E-value=66 Score=32.05 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhH
Q 004516 13 RVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 13 ~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL 64 (747)
..++.+.+.++++|..++..... ...+.+.++......+.++.+.....
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~---~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSE---VIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555322 44455555554445555444444333
No 167
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.21 E-value=37 Score=38.13 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=58.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004516 230 LCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIG 309 (747)
Q Consensus 230 ~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~ 309 (747)
....-+..-...|++....|...++++.++++-+| .++..+-.+.+....+|...+..+...-.-+.....++..+.
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS 307 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33445555666777777778888888888888877 455555555666666666666666666666666666666655
Q ss_pred HHHHHhhcCchhhHH
Q 004516 310 KYIEELNQDPASKDK 324 (747)
Q Consensus 310 ~e~e~~~kELe~kek 324 (747)
.+++....+++.+..
T Consensus 308 eeLe~vK~emeerg~ 322 (359)
T PF10498_consen 308 EELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHhcC
Confidence 555544444444433
No 168
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.88 E-value=1.6e+02 Score=35.64 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 004516 78 IESKEIEL 85 (747)
Q Consensus 78 le~lE~ei 85 (747)
+..++..+
T Consensus 52 V~eLE~sL 59 (617)
T PF15070_consen 52 VQELERSL 59 (617)
T ss_pred HHHHHHHH
Confidence 33333333
No 169
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.85 E-value=1.7e+02 Score=35.45 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhh--hhhcchHHHHHHHH---HHhhhCCCCCC
Q 004516 546 AMKVAGEWKKKMR--VAVENSLEVLGFLH---LLAAYRLAPAF 583 (747)
Q Consensus 546 A~~lA~~WK~ki~--~~~~~~lea~gFL~---lla~fgl~s~f 583 (747)
-.+++.-|..++- +++++++ +||.. .=..|-|-|.|
T Consensus 616 ~~rlk~vF~~ki~eFr~ac~sL--~Gykid~~~~s~~ritS~y 656 (716)
T KOG4593|consen 616 NQRLKEVFASKIQEFRDACYSL--LGYKIDFTLESRYRLTSGY 656 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhhhhhcccccceeeeeec
Confidence 3467777887764 2344432 23332 11445566666
No 170
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.80 E-value=60 Score=30.17 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=13.4
Q ss_pred HHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhh
Q 004516 28 IARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSND 63 (747)
Q Consensus 28 ~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~e 63 (747)
.+++.+++ +...+..++..+..++-+...+..+
T Consensus 6 ~l~as~~e---l~n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 6 ALEASQNE---LQNRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHH---HHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 34444444 5555555555555555555444333
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.58 E-value=1.6e+02 Score=34.99 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=22.6
Q ss_pred HhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004516 214 LKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELW 253 (747)
Q Consensus 214 L~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~ 253 (747)
+..-+..+.....+++...+++...-.+|-..+++.+..+
T Consensus 341 l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l 380 (563)
T TIGR00634 341 LDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERL 380 (563)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666666666666666666666666554444443
No 172
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.32 E-value=1.4e+02 Score=34.16 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=35.4
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcccc----hhhhhhhHhhHHHHHHHHH
Q 004516 1 MDNCTVNISEELRVAESKKEALRRSFDIARSQSNS----VPVFTGQWDDLEEHLDLTK 54 (747)
Q Consensus 1 ~~~~~~~l~~el~~~e~~~~~lrk~l~~Le~~r~s----i~~l~~~l~~le~el~el~ 54 (747)
|+.|.+.|..+++.++.+...+.+.-+...+.-+. +..|..++..+++.+.+-.
T Consensus 213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqE 270 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQE 270 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67889999999999999998888743333322221 4556666666666555433
No 173
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.31 E-value=66 Score=36.91 Aligned_cols=16 Identities=0% Similarity=-0.141 Sum_probs=7.1
Q ss_pred hHHHhhHHHHHHHHHH
Q 004516 353 TIAECSKEVELKKNQF 368 (747)
Q Consensus 353 ele~~~kele~Ke~ql 368 (747)
....|..+++..+.+.
T Consensus 411 nq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 411 NQDVWRGKLKELEERE 426 (493)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3334555444444443
No 174
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.06 E-value=1.6e+02 Score=34.05 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccc
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSN 34 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~ 34 (747)
+.+++..++.++..++..+..|.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665543
No 175
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.00 E-value=1.7e+02 Score=34.53 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=5.9
Q ss_pred cccccccCCCC
Q 004516 705 SSLATQHGPGV 715 (747)
Q Consensus 705 ~~~~~~~~~~~ 715 (747)
.++|-|-|--|
T Consensus 454 ~~~aiqaGrei 464 (514)
T TIGR03319 454 KSYAIQAGREI 464 (514)
T ss_pred hhhhhhcCcEE
Confidence 44556666443
No 176
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.35 E-value=65 Score=34.78 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=23.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHH
Q 004516 178 KVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228 (747)
Q Consensus 178 el~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~i 228 (747)
++-+.++-|+..+..|.+| ...|-+|...|..-.++|+..-..|
T Consensus 125 EIkQLkQvieTmrssL~ek-------DkGiQKYFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 125 EIKQLKQVIETMRSSLAEK-------DKGIQKYFVDINIQNKKLESLLQSM 168 (305)
T ss_pred HHHHHHHHHHHHHhhhchh-------hhhHHHHHhhhhhhHhHHHHHHHHH
Confidence 3334444444444444433 5667777777766666655554444
No 177
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=75.25 E-value=1e+02 Score=33.27 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.5
Q ss_pred HHHHHHHhhHHHH
Q 004516 83 IELVLVGKKIEDC 95 (747)
Q Consensus 83 ~eieele~eLeEl 95 (747)
-++..++..+.++
T Consensus 166 vkV~WLR~~L~Ei 178 (269)
T PF05278_consen 166 VKVDWLRSKLEEI 178 (269)
T ss_pred cchHHHHHHHHHH
Confidence 3444444444443
No 178
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.84 E-value=90 Score=31.96 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHHHH
Q 004516 90 KKIEDCNGELACKKK 104 (747)
Q Consensus 90 ~eLeElE~ele~~k~ 104 (747)
..+.+++..+..++.
T Consensus 131 ~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 131 SEIKELEMKILELQR 145 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 179
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=74.45 E-value=1.4e+02 Score=32.69 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=5.6
Q ss_pred hhhHHHHHHhHh
Q 004516 131 SGSLNLKKEELC 142 (747)
Q Consensus 131 ~~eLe~~eeeL~ 142 (747)
+.+++..+.+|+
T Consensus 90 EtEiES~rsRLa 101 (305)
T PF14915_consen 90 ETEIESYRSRLA 101 (305)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 180
>PRK12704 phosphodiesterase; Provisional
Probab=74.45 E-value=1.9e+02 Score=34.25 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.2
Q ss_pred cHHHHhhhC
Q 004516 601 TPKLRQTLG 609 (747)
Q Consensus 601 a~~L~~~Lg 609 (747)
...+++..|
T Consensus 386 Ga~il~~~~ 394 (520)
T PRK12704 386 GAELAKKYK 394 (520)
T ss_pred HHHHHHHcC
Confidence 344555444
No 181
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.42 E-value=1.1e+02 Score=31.62 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHhhhhHHHHHHhHhhhhhhh
Q 004516 119 ELQLKENELNSLSGSLNLKKEELCSVQGWI 148 (747)
Q Consensus 119 ELe~keeeL~e~~~eLe~~eeeL~~~~~~l 148 (747)
+|+.+...|.+...++..+-.+|-.+++.+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql 40 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQL 40 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444455555555555554444444443333
No 182
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.23 E-value=1.3e+02 Score=32.41 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=9.1
Q ss_pred CCChHHHHHHHHHHHHHHHhh
Q 004516 537 EINAQVRDEAMKVAGEWKKKM 557 (747)
Q Consensus 537 ~i~~~vke~A~~lA~~WK~ki 557 (747)
..++...+..+..--+.+.+|
T Consensus 274 s~~s~l~dQLK~qNQEL~ski 294 (307)
T PF10481_consen 274 SSSSQLLDQLKAQNQELRSKI 294 (307)
T ss_pred CCchHHHHHHHHHhHHHHHHH
Confidence 334444444444444444443
No 183
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.94 E-value=90 Score=30.28 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=4.6
Q ss_pred hhHHHHHHHHHHH
Q 004516 90 KKIEDCNGELACK 102 (747)
Q Consensus 90 ~eLeElE~ele~~ 102 (747)
..++.+++++...
T Consensus 80 ~~~~~~ere~~~~ 92 (151)
T PF11559_consen 80 EQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 184
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=73.91 E-value=2.5 Score=34.03 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccch
Q 004516 158 LQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPY 221 (747)
Q Consensus 158 L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel 221 (747)
|.+....+++...+|....+.||.|++.++..++ ...+.++..++.....++
T Consensus 2 l~~~~~~~~k~i~~l~~~~~~CPlC~r~l~~e~~------------~~li~~~~~~i~~~~~~l 53 (54)
T PF04423_consen 2 LKSEIEELKKYIEELKEAKGCCPLCGRPLDEEHR------------QELIKKYKSEIEELPEKL 53 (54)
T ss_dssp HHHHHHHHHHHHHHHTT-SEE-TTT--EE-HHHH------------HHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHH------------HHHHHHHHHHHHhhhhcc
Confidence 3466677888888889888899999999999998 677777777777665543
No 185
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=72.97 E-value=1.5e+02 Score=32.43 Aligned_cols=17 Identities=12% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhhH
Q 004516 48 EHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 48 ~el~el~~~iee~~~eL 64 (747)
.++..++...+++...|
T Consensus 31 ediei~Kekn~~Lqk~l 47 (305)
T PF14915_consen 31 EDIEILKEKNDDLQKSL 47 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 186
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.66 E-value=57 Score=33.82 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 97 GELACKKKELGLVQKRIGECKRELQ 121 (747)
Q Consensus 97 ~ele~~k~eL~~le~eI~~le~ELe 121 (747)
.+...+++++..++.+++.++.++.
T Consensus 139 ~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 139 EENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 187
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=72.00 E-value=2.3e+02 Score=34.08 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=35.4
Q ss_pred HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004516 43 WDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGEL 99 (747)
Q Consensus 43 l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~el 99 (747)
+..+++.+..+....+.+.-+++....+++.....+.+++-=|+..+..+...++-+
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL 162 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML 162 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH
Confidence 444555555666666666666666666667666666666666666666666555443
No 188
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.39 E-value=84 Score=30.15 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 004516 47 EEHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 47 e~el~el~~~iee~~~eL 64 (747)
..++..+...+......|
T Consensus 49 ~kql~~vs~~l~~tKkhL 66 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKHL 66 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 189
>PRK12705 hypothetical protein; Provisional
Probab=71.33 E-value=2.2e+02 Score=33.64 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=13.5
Q ss_pred hhhhcccCcccccCChHHHHHHHHHh
Q 004516 446 LLQAKTEDPEKLTSSGRYLQFLLNQH 471 (747)
Q Consensus 446 ~~~~~~l~~~c~~Md~~gL~~~~~~~ 471 (747)
.++++.++.---.=+|+..+.|-...
T Consensus 203 ~lp~demkGriIGreGrNir~~E~~t 228 (508)
T PRK12705 203 PIPSDAMKGRIIGREGRNIRAFEGLT 228 (508)
T ss_pred ecCChHhhccccCccchhHHHHHHhh
Confidence 34434444333444677777775543
No 190
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.87 E-value=2.5e+02 Score=34.13 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Q 004516 199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVE 278 (747)
Q Consensus 199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k 278 (747)
++..+...+..+..+++--++.+.++...+...+...++. .-+.+..+.|++|...++.+++++-.++..-.
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv--------~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~ 309 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLREELATLRENRETV--------GLLQEELEGLQSKLGRLEKLQSTLLGLELENE 309 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555666666555555555555444332211110 12233444455555555555555555544444
Q ss_pred HHHHHH
Q 004516 279 SLEQEL 284 (747)
Q Consensus 279 ~~EkeL 284 (747)
.+..+|
T Consensus 310 ~l~tkL 315 (716)
T KOG4593|consen 310 DLLTKL 315 (716)
T ss_pred HHHHHH
Confidence 444333
No 191
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.76 E-value=2.6e+02 Score=34.34 Aligned_cols=9 Identities=0% Similarity=-0.090 Sum_probs=3.5
Q ss_pred hHhhhhhhh
Q 004516 675 LENQYKRLR 683 (747)
Q Consensus 675 ~~~~~~~~~ 683 (747)
+..-.+.++
T Consensus 696 ~~~~~~~l~ 704 (754)
T TIGR01005 696 GRADAQGIS 704 (754)
T ss_pred HHHHHHHHH
Confidence 333333333
No 192
>PRK00106 hypothetical protein; Provisional
Probab=70.64 E-value=2.3e+02 Score=33.66 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=11.0
Q ss_pred hhhhcccCcccccCChHHHHHHHH
Q 004516 446 LLQAKTEDPEKLTSSGRYLQFLLN 469 (747)
Q Consensus 446 ~~~~~~l~~~c~~Md~~gL~~~~~ 469 (747)
+++++.++.----=+|+..+.|-.
T Consensus 230 ~lp~demkGriIGreGrNir~~E~ 253 (535)
T PRK00106 230 HLPDDNMKGRIIGREGRNIRTLES 253 (535)
T ss_pred EcCChHhhcceeCCCcchHHHHHH
Confidence 444444433223335666665543
No 193
>PRK00106 hypothetical protein; Provisional
Probab=70.18 E-value=2.4e+02 Score=33.58 Aligned_cols=7 Identities=57% Similarity=0.657 Sum_probs=2.9
Q ss_pred ccccccC
Q 004516 706 SLATQHG 712 (747)
Q Consensus 706 ~~~~~~~ 712 (747)
++|-|-|
T Consensus 476 ~yaiqaG 482 (535)
T PRK00106 476 SFALQAG 482 (535)
T ss_pred HHHHhcC
Confidence 3444444
No 194
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=70.12 E-value=2.3e+02 Score=33.43 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=30.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004516 40 TGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELAC 101 (747)
Q Consensus 40 ~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~ 101 (747)
...+++.+..+..+...+......+......-+.-..++..-...++.++..+..-...+.+
T Consensus 103 ~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge 164 (570)
T COG4477 103 KHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGE 164 (570)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444444444444444444444444444444555555555555555555555554444443
No 195
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.43 E-value=1.4e+02 Score=30.71 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=15.2
Q ss_pred HHhHHHhhHHHHHHHHHHhHHHHHhhH
Q 004516 351 EKTIAECSKEVELKKNQFNLTQHESNL 377 (747)
Q Consensus 351 ~Kele~~~kele~Ke~ql~~~~~ELe~ 377 (747)
++.+......+|.+..||.....--+.
T Consensus 149 EkKl~~l~~~lE~keaqL~evl~~~nl 175 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLNEVLAAANL 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555556666666666655544333
No 196
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.28 E-value=1.6e+02 Score=31.28 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 004516 235 LESEKKEL 242 (747)
Q Consensus 235 le~k~~El 242 (747)
|.....+|
T Consensus 191 L~~L~~EL 198 (246)
T PF00769_consen 191 LKELKSEL 198 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 197
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.07 E-value=1.3e+02 Score=32.70 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 004516 392 KEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREK 429 (747)
Q Consensus 392 le~~leslE~~le~k~keLe~k~k~le~~~kE~el~E~ 429 (747)
....|-...+.|...+..++..++++++.-.-.++...
T Consensus 136 mrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 136 MRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQS 173 (305)
T ss_pred HHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHh
Confidence 34455555777888888888888888877665554333
No 198
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.01 E-value=91 Score=34.26 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=2.4
Q ss_pred HHHHHH
Q 004516 14 VAESKK 19 (747)
Q Consensus 14 ~~e~~~ 19 (747)
++|++.
T Consensus 22 eLErqq 27 (302)
T PF09738_consen 22 ELERQQ 27 (302)
T ss_pred HHHHHH
Confidence 344433
No 199
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=68.82 E-value=1.4e+02 Score=30.53 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004516 204 RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQ 246 (747)
Q Consensus 204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~ 246 (747)
+..+..+..+|...++.|......++.....|..++..|....
T Consensus 70 E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~ 112 (201)
T PF12072_consen 70 ERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKE 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333333333333
No 200
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.43 E-value=78 Score=27.34 Aligned_cols=61 Identities=7% Similarity=0.028 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004516 53 TKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRI 113 (747)
Q Consensus 53 l~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI 113 (747)
+..++..+.+.|.....++++...+...+..+...+..+...+..+....+..+..+-+++
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333343333333444444444444444444444444444444444444444433
No 201
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=68.39 E-value=1.8e+02 Score=31.47 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=42.8
Q ss_pred hhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 345 EESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFE 418 (747)
Q Consensus 345 ~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le 418 (747)
.++.....+-.....+|+.|+.+++...+-|..++.-==.+..+++.++.++..+=..--.++-.|.-.+.+++
T Consensus 183 ~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 183 QQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444455677777777777777777777766666666665555555444444444444444444444
No 202
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.72 E-value=1.4e+02 Score=34.14 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 004516 17 SKKEALRRSFDIARSQ 32 (747)
Q Consensus 17 ~~~~~lrk~l~~Le~~ 32 (747)
...+.+.++...++.+
T Consensus 150 ~e~~~~~~e~~~Y~~~ 165 (447)
T KOG2751|consen 150 KEVEDAEDEVDTYKAC 165 (447)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 203
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.62 E-value=72 Score=33.09 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 88 VGKKIEDCNGELACKKKELGLVQKRIGECKREL 120 (747)
Q Consensus 88 le~eLeElE~ele~~k~eL~~le~eI~~le~EL 120 (747)
++.+..++..++...+.++..++.+++..+..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555444433
No 204
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=67.15 E-value=11 Score=41.47 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVL 87 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eiee 87 (747)
|.+.|-.+|...+.|...++.+....++ +...+..+...+.+....+..+...+......+......+..+...+..
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSd---Lss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISD---LSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence 3444555555555555555555555333 4445555554444444444444444433333334444444444444444
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 88 VGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENEL 127 (747)
Q Consensus 88 le~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL 127 (747)
-...|..+...+..+..++..++..+....-.|..++.++
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV 149 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRV 149 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHH
Confidence 4444444444444444444444444444444444444444
No 205
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.73 E-value=2.1e+02 Score=31.62 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q 004516 204 RTLIEEYEEVLKDKERPYDEVKKSLILC-ETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQ 282 (747)
Q Consensus 204 e~~i~e~~~EL~~KEkel~~~~~~ie~~-~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~Ek 282 (747)
-..+.++...|..+=..|......++.| ..+|...+.+|......+.....++...+.++..+...++....+...+..
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566666666665 334444444444433344444444444444444444444444444444444
Q ss_pred HHHHHHHh
Q 004516 283 ELDSMRKQ 290 (747)
Q Consensus 283 eL~~~~k~ 290 (747)
++...++.
T Consensus 254 ~I~~ae~~ 261 (312)
T smart00787 254 EIAEAEKK 261 (312)
T ss_pred HHHHHHHH
Confidence 44444443
No 206
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.59 E-value=47 Score=36.92 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004516 53 TKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSG 132 (747)
Q Consensus 53 l~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~ 132 (747)
.+..+......+......+......+..+...+..+...+.....+...++.++.....++.....=+..+..+-..|..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Q ss_pred hHHHHHHhHhhhhh
Q 004516 133 SLNLKKEELCSVQG 146 (747)
Q Consensus 133 eLe~~eeeL~~~~~ 146 (747)
.+......+..+.|
T Consensus 299 ~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 299 QIEELEEQLKNLVG 312 (344)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHH
No 207
>PRK10869 recombination and repair protein; Provisional
Probab=66.43 E-value=2.8e+02 Score=33.02 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004516 355 AECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVK 422 (747)
Q Consensus 355 e~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~k 422 (747)
+.+.-.|...+........++-.....+..-...++....++..++..+....+++......+...++
T Consensus 302 e~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 302 EQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444434444444555666666666666666665555554444
No 208
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.75 E-value=2.9e+02 Score=32.96 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 004516 199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCET 233 (747)
Q Consensus 199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~k 233 (747)
.|...+...+.+.+++..-..++...-..+...++
T Consensus 336 ~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 336 QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333555555555555555566666665655443
No 209
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=65.73 E-value=1.6e+02 Score=29.79 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHHhHhhhhHHHHHHhHhhhh
Q 004516 123 KENELNSLSGSLNLKKEELCSVQ 145 (747)
Q Consensus 123 keeeL~e~~~eLe~~eeeL~~~~ 145 (747)
.++.+..++++....+++|..++
T Consensus 121 mQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 121 MQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665443
No 210
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.21 E-value=2.3e+02 Score=31.23 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004516 77 EIESKEIELVLVGKKIEDCNGELACKK 103 (747)
Q Consensus 77 ele~lE~eieele~eLeElE~ele~~k 103 (747)
..+.++..+......+..+..++....
T Consensus 98 ~~~~le~~L~~~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 98 RNEALEEQLGAALEQVEQLRHELSMKD 124 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445444444443
No 211
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=63.98 E-value=1.8e+02 Score=29.90 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 73 QRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKE 124 (747)
Q Consensus 73 e~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~ke 124 (747)
........+..++++++..+..++.....+-.+...++.+...+..++..++
T Consensus 57 qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 57 QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555554444444444444444444444433
No 212
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=61.70 E-value=1.7e+02 Score=28.84 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=29.2
Q ss_pred HhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 004516 356 ECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKG 402 (747)
Q Consensus 356 ~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~ 402 (747)
|.-++++.-.+.|+..-.+|..+......-.+++.+..+.|+...+.
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667777766666666666666566666655555554443
No 213
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.70 E-value=1.9e+02 Score=31.26 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=3.7
Q ss_pred HHHHHHhhHH
Q 004516 171 EIELREKKVG 180 (747)
Q Consensus 171 El~~kekel~ 180 (747)
.+.-.+.+++
T Consensus 247 Nl~yLe~qle 256 (267)
T PF10234_consen 247 NLDYLEHQLE 256 (267)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 214
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.32 E-value=2.6e+02 Score=30.87 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 004516 14 VAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 14 ~~e~~~~~lrk~l~~Le~~ 32 (747)
++.+.+..=|.-+..++.+
T Consensus 74 EL~~~I~egr~~~~~~E~e 92 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEE 92 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 215
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=61.23 E-value=2e+02 Score=29.56 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 004516 11 ELRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 11 el~~~e~~~~~lrk~l~~Le~~ 32 (747)
-|+.++..+..++.++...-..
T Consensus 31 ~ird~e~~l~~a~~~~a~~~a~ 52 (221)
T PF04012_consen 31 AIRDMEEQLRKARQALARVMAN 52 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 216
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.04 E-value=2.2e+02 Score=35.39 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004516 204 RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLE 264 (747)
Q Consensus 204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~ 264 (747)
...+..-.+-+.....+++.+...++..+.+++....+++.....+.+...+++.+.++++
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666777777777777777777777776666666666666666665554
No 217
>PF13166 AAA_13: AAA domain
Probab=59.90 E-value=3.9e+02 Score=32.44 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=5.4
Q ss_pred CCchhHHHHHh
Q 004516 490 RDPALLVLHAI 500 (747)
Q Consensus 490 ~DPaklVLdai 500 (747)
|++.+-||.+.
T Consensus 637 ~N~~RriLE~y 647 (712)
T PF13166_consen 637 PNVMRRILEAY 647 (712)
T ss_pred HHHhHHHHHHH
Confidence 34444455555
No 218
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=58.19 E-value=2.2e+02 Score=29.11 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 70 LLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENEL 127 (747)
Q Consensus 70 elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL 127 (747)
.+.+...+...++..+.+++..|.++.+....+.........+|.+++.....+..++
T Consensus 118 ~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 118 KIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444555555555555444444444444444444444444333333
No 219
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=57.45 E-value=3.6e+02 Score=31.32 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHH-HHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 360 EVELKKNQFNLTQ-HESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLE 411 (747)
Q Consensus 360 ele~Ke~ql~~~~-~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe 411 (747)
.+.-.+.+++.+. +-|++++...+...+++-.++..|...++.--.-...|.
T Consensus 464 rLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 464 RLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444555554 666666666665555555555555554443333333333
No 220
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=57.23 E-value=4.4e+02 Score=32.22 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=55.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HH-----HhHHHHHHHHHHH
Q 004516 196 KESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWM-KF-----HSEQEKLELLQGR 269 (747)
Q Consensus 196 ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~-el-----e~k~~~l~~lee~ 269 (747)
.+..|..++..+..-..+|..-.++.+..++.+.....+|+.....+..+.+-|-++.- +. +.+..+ +-+.
T Consensus 174 Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~---L~~t 250 (739)
T PF07111_consen 174 LEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREE---LLET 250 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHH---HHHH
Confidence 33444555565666667777777777888888888888888877777777766655541 11 111122 3455
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHH
Q 004516 270 VRLHENEVESLEQELDSMRKQQKK 293 (747)
Q Consensus 270 ~kele~K~k~~EkeL~~~~k~l~~ 293 (747)
++++..+...+.-.++...-.+..
T Consensus 251 Vq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 251 VQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555444444433333
No 221
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=57.13 E-value=1.7e+02 Score=27.33 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhH
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDV 64 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL 64 (747)
+.+.|.-++..++..+-+.+.|-.++.. |...+..+..+-.+...++.++...|
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~---L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQ---LRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444333 44444444444444444444433333
No 222
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.97 E-value=4e+02 Score=31.36 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 004516 160 LLKNLIKECCDEIELREKK 178 (747)
Q Consensus 160 ~~~~~~ee~~~El~~keke 178 (747)
+.+..+.+|...+.-.+.+
T Consensus 279 EleDkyAE~m~~~~EaeeE 297 (596)
T KOG4360|consen 279 ELEDKYAECMQMLHEAEEE 297 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444433
No 223
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.87 E-value=4.4e+02 Score=31.80 Aligned_cols=41 Identities=7% Similarity=-0.024 Sum_probs=21.0
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004516 211 EEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKE 251 (747)
Q Consensus 211 ~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e 251 (747)
..+--.-+..+...++.++-++.....+..|+.+...++..
T Consensus 223 ~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~ 263 (861)
T KOG1899|consen 223 VQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQ 263 (861)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHH
Confidence 33333444455555555655555555555555555444433
No 224
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=55.44 E-value=8.2 Score=38.64 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHHHHHHhhhCCCCCCChhHHHHHHHHhhc-----ccccHHHHhhhCCCCCcchHHHHHhhcCCccceeeee--cc-CCC
Q 004516 568 LGFLHLLAAYRLAPAFDGEELESLLRIVAQ-----HRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVG--TS-APT 639 (747)
Q Consensus 568 ~gFL~lla~fgl~s~fd~del~~L~~~v~~-----~~~a~~L~~~Lgl~~k~~d~I~~LI~~g~~i~Av~~~--~~-~~k 639 (747)
.+.|+.+..|++.+ |...+..++..... +.-+...++.||..+ ..+|+-|+.+|+.++|++|+ ++ ++.
T Consensus 45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 55667777788766 44555555544433 222344455555332 24667899999999999998 34 999
Q ss_pred CCCchhhhh
Q 004516 640 NQPDSSLMN 648 (747)
Q Consensus 640 ~~p~~ll~~ 648 (747)
+||.-+|.+
T Consensus 121 ~~~~~fLeA 129 (167)
T PF07035_consen 121 VPARKFLEA 129 (167)
T ss_pred CCHHHHHHH
Confidence 999776654
No 225
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=55.32 E-value=2.8e+02 Score=29.43 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHH
Q 004516 168 CCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228 (747)
Q Consensus 168 ~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~i 228 (747)
+..|+..++.=+..+++.+...+.+....... +.+.+..|...|..-..-+.+....+
T Consensus 151 Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~---i~~~L~~~~~kL~Dl~~~l~eA~~~~ 208 (264)
T PF06008_consen 151 AEDELKEAEDLLSRVQKWFQKPQQENESLAEA---IRDDLNDYNAKLQDLRDLLNEAQNKT 208 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444433322222 25555666655555555555544433
No 226
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.32 E-value=4.4e+02 Score=31.00 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=23.4
Q ss_pred cCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHhh
Q 004516 452 EDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKS 488 (747)
Q Consensus 452 l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~~ 488 (747)
+...|..|||..|...+--+++=.+.+-+.+.-.+..
T Consensus 551 l~G~~~~~~g~~lql~~eVn~KlqAvlEdtl~knItl 587 (613)
T KOG0992|consen 551 LYGNCVIMDGVNLQLSLEVNVKLQAVLEDTLLKNITL 587 (613)
T ss_pred HhcCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999888865544444344555555554443
No 227
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.12 E-value=50 Score=34.47 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=44.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHH
Q 004516 268 GRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKF 328 (747)
Q Consensus 268 e~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~ 328 (747)
++......+..++++++++..+.+++..+.....+++.+++..++..+-++-.....+++.
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3344455666777778888888888888888888888888888877777766666666643
No 228
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.23 E-value=3.1e+02 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 004516 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEHEK 191 (747)
Q Consensus 159 ~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~ 191 (747)
.+...+......-|...+.++...++.+..+.+
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666666666666666665554
No 229
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.05 E-value=2.1e+02 Score=26.38 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 004516 10 EELRVAESKKEALRRSFDIARSQSNS 35 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~r~s 35 (747)
+++..+=.+++.++.++..+...+..
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~ 28 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQ 28 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554333
No 230
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.89 E-value=4.7e+02 Score=30.09 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhhH
Q 004516 207 IEEYEEVLKDKERPYDEVKKSLILCETKLE 236 (747)
Q Consensus 207 i~e~~~EL~~KEkel~~~~~~ie~~~kele 236 (747)
+.+-+.-+.+.+.++..+.+.+..+.-++.
T Consensus 274 L~ekv~~~qti~~e~~~~lk~i~~~~~e~d 303 (446)
T KOG4438|consen 274 LEEKVTNLQTIEKELKALLKKISSDGVEYD 303 (446)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334455566666666677666666653333
No 231
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.85 E-value=3.5e+02 Score=28.56 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516 116 CKRELQLKENELNSLSGSLNLKKEELC 142 (747)
Q Consensus 116 le~ELe~keeeL~e~~~eLe~~eeeL~ 142 (747)
++.++...+.+++-..+-++...+++.
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444443
No 232
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.62 E-value=5e+02 Score=32.42 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=14.8
Q ss_pred hhhhhHHHHHhhCCCchhHHHHHhhccCCCCCCCC
Q 004516 477 SIFCKVFDTIKSARDPALLVLHAISGFYPPHSREG 511 (747)
Q Consensus 477 ~lr~e~~~AL~~a~DPaklVLdai~gf~~~~~~~g 511 (747)
.||..|+.-|+..| .|..|+..+...|
T Consensus 746 ~Lr~~v~~~L~~~~--------~V~~f~~a~~~~G 772 (782)
T PRK00409 746 KLRKGVQEFLKKHP--------SVKSFRDAPPNEG 772 (782)
T ss_pred HHHHHHHHHHcCCC--------ceeeeeecCcccC
Confidence 34555566665544 2566776654444
No 233
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.45 E-value=2.3e+02 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=10.5
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 004516 171 EIELREKKVGEVQRSIEEHEKQLAFKES 198 (747)
Q Consensus 171 El~~kekel~~~~k~ie~~~~el~~ke~ 198 (747)
.|..+..++......+...+..|..++.
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L~~~e~ 42 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEELEKKEQ 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 234
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.75 E-value=5.2e+02 Score=30.21 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=9.9
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHH
Q 004516 169 CDEIELREKKVGEVQRSIEEHEKQ 192 (747)
Q Consensus 169 ~~El~~kekel~~~~k~ie~~~~e 192 (747)
..+++.++.++...+..++.-+++
T Consensus 336 ~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 336 KSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333344444444444444444443
No 235
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.27 E-value=5.1e+02 Score=30.05 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 004516 205 TLIEEYEEVLK 215 (747)
Q Consensus 205 ~~i~e~~~EL~ 215 (747)
..|+++..+|.
T Consensus 396 gniRKq~~DI~ 406 (521)
T KOG1937|consen 396 GNIRKQEQDIV 406 (521)
T ss_pred hHHHHHHHHHH
Confidence 33444444433
No 236
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.93 E-value=3.9e+02 Score=28.53 Aligned_cols=35 Identities=6% Similarity=-0.008 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhh
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQ 42 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~ 42 (747)
++..|-.+++=...+-+.-.++.+...++.-+..-
T Consensus 66 L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~l 100 (243)
T cd07666 66 FSQKINVLDKISQRIYKEQREYFEELKEYGPIYTL 100 (243)
T ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 237
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.36 E-value=5.8e+02 Score=31.28 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHh
Q 004516 106 LGLVQKRIGECKRELQLKENELNSLSGSLNLKKEE 140 (747)
Q Consensus 106 L~~le~eI~~le~ELe~keeeL~e~~~eLe~~eee 140 (747)
+..++..+..++..+..+.........+++.....
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 277 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKE 277 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 238
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=46.07 E-value=3.7e+02 Score=28.11 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=34.5
Q ss_pred hhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004516 41 GQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELAC 101 (747)
Q Consensus 41 ~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~ 101 (747)
.-+..++..+..+...+......+......+.......+.....+.+....+.++...+..
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555566666666555555555555555555555555555555555555555554
No 239
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.65 E-value=79 Score=32.50 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 004516 15 AESKKEALRRSFDIARSQSNS 35 (747)
Q Consensus 15 ~e~~~~~lrk~l~~Le~~r~s 35 (747)
..|++-.|+++|.+|+...+.
T Consensus 94 ~dwEevrLkrELa~Le~~l~~ 114 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSK 114 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 345666667777776666443
No 240
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.58 E-value=2.8e+02 Score=26.59 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=6.8
Q ss_pred hhhHhhHHHHHHHHHHH
Q 004516 40 TGQWDDLEEHLDLTKKS 56 (747)
Q Consensus 40 ~~~l~~le~el~el~~~ 56 (747)
..+++.+.+.+..+++.
T Consensus 49 ~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444433333333
No 241
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.54 E-value=3.9e+02 Score=33.28 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=22.3
Q ss_pred HhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004516 214 LKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEK 262 (747)
Q Consensus 214 L~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~ 262 (747)
+.....+++.+..+++..+.+++....+++.....+.+...+++.+.++
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444444444444444444444443333333
No 242
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=45.43 E-value=1.5e+02 Score=32.36 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 99 LACKKKELGLVQKRIGECKRELQL 122 (747)
Q Consensus 99 le~~k~eL~~le~eI~~le~ELe~ 122 (747)
+.+..+.+..+-.+++.++.+++.
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444434444333
No 243
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=6.2e+02 Score=30.21 Aligned_cols=294 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhhhhHHHHHHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004516 101 CKKKELGLVQKRIGECKRELQL-KENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKV 179 (747)
Q Consensus 101 ~~k~eL~~le~eI~~le~ELe~-keeeL~e~~~eLe~~eeeL~~~~~~l~~~~~~~~~L~~~~~~~ee~~~El~~kekel 179 (747)
....++..++.+|..+..++.. ....+.....=|...+++. ..+..+++...+++....++
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~------------------~Lkqq~eEleaeyd~~R~El 66 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKE------------------DLKQQLEELEAEYDLARTEL 66 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004516 180 GEVQRSIEEHEK-----------QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSS 248 (747)
Q Consensus 180 ~~~~k~ie~~~~-----------el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~ 248 (747)
+..+..+...+- .=+..-.+=..++.-.-.+..+|+..=|++..+-.++...+..+...-..+..-...
T Consensus 67 dqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~ 146 (772)
T KOG0999|consen 67 DQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAA 146 (772)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhH
Q 004516 249 IKELWMKFHSEQEKLELLQGRVRLHENEVESLEQ--ELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKEL 326 (747)
Q Consensus 249 i~e~~~ele~k~~~l~~lee~~kele~K~k~~Ek--eL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~L 326 (747)
+..+-..+....++++ ..+.+-+.. +|+.....+.+.+..|....=+++....++..++++.+....++
T Consensus 147 ~E~qR~rlr~elKe~K---------fRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ 217 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYK---------FREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL 217 (772)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-------HhHHHHHHHhhHHHhhhhHhHHhHHHhhHH---------------------------------------
Q 004516 327 KFVQ-------QSIKECSKEFQWKKEESISTEKTIAECSKE--------------------------------------- 360 (747)
Q Consensus 327 e~~~-------~~L~e~~kEle~k~~ele~~~Kele~~~ke--------------------------------------- 360 (747)
++.- .+|++-..-+...-.+-....|+|.....-
T Consensus 218 ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~ 297 (772)
T KOG0999|consen 218 EEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLA 297 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhcc
Q ss_pred ---------------HHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004516 361 ---------------VELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRV 421 (747)
Q Consensus 361 ---------------le~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~ 421 (747)
.+....++++...+|.+....+..+...+...+..++.-+..+......+...-..+.+..
T Consensus 298 ~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~ 373 (772)
T KOG0999|consen 298 SDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALR 373 (772)
T ss_pred chhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
No 244
>PF15456 Uds1: Up-regulated During Septation
Probab=44.30 E-value=2.9e+02 Score=26.37 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhh
Q 004516 114 GECKRELQLKENELNSLSGSLNLKKEELCSVQ 145 (747)
Q Consensus 114 ~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~ 145 (747)
..-+.++......+++|..+|...+.++.+++
T Consensus 77 ~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~ 108 (124)
T PF15456_consen 77 LKAEEELAESDRKCEELAQELWKLENRLAEVR 108 (124)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666665443
No 245
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.98 E-value=4.7e+02 Score=32.57 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=14.3
Q ss_pred hhhhHHHHHhhCCCchhHHHHHhhccCCCCCCCC
Q 004516 478 IFCKVFDTIKSARDPALLVLHAISGFYPPHSREG 511 (747)
Q Consensus 478 lr~e~~~AL~~a~DPaklVLdai~gf~~~~~~~g 511 (747)
||..|+.=|+..|. |..|+..+...|
T Consensus 736 Lr~~v~~~L~~~~~--------V~~f~~a~~~~G 761 (771)
T TIGR01069 736 LRKGVQELLKNHPK--------VKSFRDAPPNDG 761 (771)
T ss_pred HHHHHHHHhcCCcc--------eeeecccCcccC
Confidence 45555555555543 566766554444
No 246
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.97 E-value=4.2e+02 Score=28.12 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhh
Q 004516 16 ESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSN 62 (747)
Q Consensus 16 e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~ 62 (747)
...++++...+..+....+. ....+..++.++..+...++.+..
T Consensus 23 ~~~~e~~~~~L~~~~~~~~~---~~~~~~~~e~~l~~L~~d~~~L~~ 66 (264)
T PF06008_consen 23 LSSIEDLTNQLRSYRSKLNP---QKQQLDPLEKELESLEQDVENLQE 66 (264)
T ss_pred HHHHHHHHHHHHHHhccchh---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444332 333444444444444444333333
No 247
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=43.70 E-value=5.7e+02 Score=29.53 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 004516 10 EELRVAESKKEALRRSFDIARSQSNS 35 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~r~s 35 (747)
.++..++...+.-.+=+..|++....
T Consensus 150 ~e~~~~~~e~~~Y~~~l~~Le~~~~~ 175 (447)
T KOG2751|consen 150 KEVEDAEDEVDTYKACLQRLEQQNQD 175 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 33445555555555555555554443
No 248
>COG5283 Phage-related tail protein [Function unknown]
Probab=43.16 E-value=8.8e+02 Score=31.61 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516 24 RSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGK 90 (747)
Q Consensus 24 k~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~ 90 (747)
..|+.|++. |-.-...|+-++.+.+.+.+.+..-...+.....-++...+-++++..+..+...
T Consensus 22 ~~in~L~ss---i~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~ 85 (1213)
T COG5283 22 KNINVLKSS---IKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNR 85 (1213)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666 5557888888888877777777666666633333334444444444433333333
No 249
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.11 E-value=5e+02 Score=28.82 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 004516 109 VQKRIGECKRELQL 122 (747)
Q Consensus 109 le~eI~~le~ELe~ 122 (747)
++.++..++..+..
T Consensus 247 l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 247 LQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 250
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.99 E-value=5.3e+02 Score=30.49 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 70 LLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENEL 127 (747)
Q Consensus 70 elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL 127 (747)
++............+.+.+...+...+++...+..++......+..+++++...+..+
T Consensus 428 qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 428 QLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3355555556666677777777777777777777777777777777777777665544
No 251
>PF13514 AAA_27: AAA domain
Probab=42.75 E-value=8.8e+02 Score=31.47 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 004516 165 IKECCDEIELREKKVGEVQRSIEEHEKQ 192 (747)
Q Consensus 165 ~ee~~~El~~kekel~~~~k~ie~~~~e 192 (747)
+......+...+..+..++..++..+..
T Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1111)
T PF13514_consen 682 LQQLEQELEEAEAELQEAQEALEEWQEE 709 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 252
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.62 E-value=4.3e+02 Score=27.85 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 77 EIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGE 115 (747)
Q Consensus 77 ele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~ 115 (747)
+...+..++..+..+++.++.....++..+...+.++..
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 253
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=42.54 E-value=47 Score=36.74 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004516 15 AESKKEALRRSFDIARSQ 32 (747)
Q Consensus 15 ~e~~~~~lrk~l~~Le~~ 32 (747)
+..|+..|....+.+...
T Consensus 33 I~eRLsaLEssv~sL~~S 50 (326)
T PF04582_consen 33 IRERLSALESSVASLSDS 50 (326)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 254
>PRK11281 hypothetical protein; Provisional
Probab=42.46 E-value=9.1e+02 Score=31.54 Aligned_cols=241 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcccchh---hhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004516 5 TVNISEELRVAESKKEALRRSFDIARSQSNSVP---VFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESK 81 (747)
Q Consensus 5 ~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~---~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~l 81 (747)
+..+...+..+-.+.....+.++.++....... .-...+..++..+..+...+.+....+.....++-.....-++.
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhhhhhhhhhh
Q 004516 82 EIELVLVGKKIEDCNGELACKK--------KELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQA 153 (747)
Q Consensus 82 E~eieele~eLeElE~ele~~k--------~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~~~l~~~~~ 153 (747)
...+.+...++.++...+.... .....+..+...++.++...+.++..-..-.+..+.+.+-....++..+.
T Consensus 162 Q~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~ 241 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEH 241 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHH----------HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHH
Q 004516 154 NQKELQLLKNLIKECCDEIELREKKVGE----------VQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDE 223 (747)
Q Consensus 154 ~~~~L~~~~~~~ee~~~El~~kekel~~----------~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~ 223 (747)
..+.|++.-...+-...+-..++.+-++ .+++++.-+. ....+......+...-.+-..
T Consensus 242 ~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~-----------Ls~~L~~~t~~~~~l~~~~~~ 310 (1113)
T PRK11281 242 QLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQ-----------LSQRLLKATEKLNTLTQQNLR 310 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHH
Q 004516 224 VKKSLILCETKLESEKKELELTQ------SSIKELWMKF 256 (747)
Q Consensus 224 ~~~~ie~~~kele~k~~El~~~~------~~i~e~~~el 256 (747)
++..++....-+...+..+.... +-+.++...|
T Consensus 311 ~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~L 349 (1113)
T PRK11281 311 VKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQAL 349 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
No 255
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.30 E-value=5.8e+02 Score=29.23 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 004516 111 KRIGECKRELQL 122 (747)
Q Consensus 111 ~eI~~le~ELe~ 122 (747)
.+|..++.+|..
T Consensus 276 ~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 276 NEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 256
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.28 E-value=8.7e+02 Score=31.26 Aligned_cols=384 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhhhhhhhhhhhHHHHHHHH
Q 004516 92 IEDCNGELACKKKELGL---------VQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLK 162 (747)
Q Consensus 92 LeElE~ele~~k~eL~~---------le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~~~l~~~~~~~~~L~~~~ 162 (747)
+.++..+++.++.++.. -+.+...-+.+.......+.....+|+..+++|..+..... .....-....
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~---~~~~~~~~l~ 482 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM---NQLEIKELLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHH
Q 004516 163 NLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKEL 242 (747)
Q Consensus 163 ~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El 242 (747)
.+...+...|.....+|...+.++...+..|+.++--+..+...-..+..--...-..++..++.+...-.++..+.+.-
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~ 562 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLD 562 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhhcCchh
Q 004516 243 ELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDV-ELKKRELNEIGKYIEELNQDPAS 321 (747)
Q Consensus 243 ~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~el-e~kek~~e~~~~e~e~~~kELe~ 321 (747)
..-+.-+..+..++-.-.+.+. .-+..-.......|..+..+....+... ...+--.....+...-+.+-+++
T Consensus 563 d~n~~~~~~~~~~l~~~~~~~~------~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~ 636 (1041)
T KOG0243|consen 563 DDNQEVIDDFQSQLSENLSTLH------GLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLES 636 (1041)
T ss_pred cccHHHHHHHhhhhhHHHHHHH------HHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHH
Q ss_pred hHHhHHHHHHhHHHHHHHhhH-HHhhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHH
Q 004516 322 KDKELKFVQQSIKECSKEFQW-KKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLK 400 (747)
Q Consensus 322 kek~Le~~~~~L~e~~kEle~-k~~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE 400 (747)
.+-..+.....+..|.+.+.+ ....+.....-++.........-.-+....+.-.-+...+.. +++..+.....+-+
T Consensus 637 ~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~~~l~~~--qe~~~~~~~~~~~~ 714 (1041)
T KOG0243|consen 637 LQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEILSLFAN--QELQELVLSQDSAQ 714 (1041)
T ss_pred HHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhH--HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH----hhhhhhhhHhhhhhhhhhhhhhhhcccCcccccCChHHHHHHHHHhhchhh
Q 004516 401 KGLEDRLQDLEIKEREFEKRVKEFE----LREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHD 476 (747)
Q Consensus 401 ~~le~k~keLe~k~k~le~~~kE~e----l~E~~i~~~~~~~~~~~~~~~~~~~~l~~~c~~Md~~gL~~~~~~~~~~~~ 476 (747)
..-.....-........+..++.+. .....+.+..+.+.....+-... ..-....++.+.+.--
T Consensus 715 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------v~~~~e~~~~~~q~~~ 782 (1041)
T KOG0243|consen 715 ELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQL------------VEDIKELLSSHDQRNN 782 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHH------------HHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHhhCCCchhHHHH
Q 004516 477 SIFCKVFDTIKSARDPALLVLH 498 (747)
Q Consensus 477 ~lr~e~~~AL~~a~DPaklVLd 498 (747)
.+-.-....++.+.+|...-+.
T Consensus 783 e~~~~~~~~~~~~~~~~~~~~~ 804 (1041)
T KOG0243|consen 783 ELLDIALQTLRSAVNSRESNLT 804 (1041)
T ss_pred HHHHHHHHHHHHhhccchhHHH
No 257
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.11 E-value=6e+02 Score=29.09 Aligned_cols=37 Identities=3% Similarity=0.110 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhHhhhhHHHHHHhH
Q 004516 105 ELGLVQKRIGECKRELQL-KENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 105 eL~~le~eI~~le~ELe~-keeeL~e~~~eLe~~eeeL 141 (747)
++..++..|...+..+.. ..+++++.+.-++.-..++
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRi 314 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRI 314 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333344444444444433 2233344344444444443
No 258
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.73 E-value=5.6e+02 Score=28.63 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004516 50 LDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNS 129 (747)
Q Consensus 50 l~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e 129 (747)
+..+..++++...+-......-+....++-....-+-..+.+...++.-+...+++-.-++-.++++..+...++++-..
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~ 166 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQT 166 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH
Confidence 33344444443333332233333333333333334444444555555555555555555555555555555555555555
Q ss_pred hhhhHHHHHHh
Q 004516 130 LSGSLNLKKEE 140 (747)
Q Consensus 130 ~~~eLe~~eee 140 (747)
+.+||.+...-
T Consensus 167 LnrELaE~lay 177 (401)
T PF06785_consen 167 LNRELAEALAY 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 259
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.15 E-value=6.5e+02 Score=29.81 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 75 AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 75 ~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
..+++.+-..+........-...+...+...+...+.....+..++......+..++.||+.-+..+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444455555555555555555555555555555555555555555555555555554444443
No 260
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.14 E-value=5.6e+02 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004516 273 HENEVESLEQELDSMRKQQKKYFDDVEL 300 (747)
Q Consensus 273 le~K~k~~EkeL~~~~k~l~~~~~ele~ 300 (747)
+.......+.+....+..+.++..-++.
T Consensus 201 L~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 201 LKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455555555555555555553
No 261
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=39.87 E-value=4e+02 Score=26.62 Aligned_cols=68 Identities=12% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004516 22 LRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGEL 99 (747)
Q Consensus 22 lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~el 99 (747)
+++.+..++.-... ...-......++..+...+.++..++ .....+.+.++......+..+.+..+.+
T Consensus 4 i~~ti~~ie~sK~q---If~I~E~~R~E~~~l~~EL~evk~~v-------~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 4 IKKTIDTIESSKEQ---IFEIAEQARQEYERLRKELEEVKEEV-------SEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444333 22233333344444444444444444 4444444444444444444444444444
No 262
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=39.80 E-value=3.4e+02 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 004516 10 EELRVAESKKEALRRSFDIARSQSNS 35 (747)
Q Consensus 10 ~el~~~e~~~~~lrk~l~~Le~~r~s 35 (747)
++|+.+-...+.++..+..+.+.++.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~ 31 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEE 31 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455554444444333
No 263
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.70 E-value=2.4e+02 Score=33.14 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 104 KELGLVQKRIGECKRELQLKENEL 127 (747)
Q Consensus 104 ~eL~~le~eI~~le~ELe~keeeL 127 (747)
.++..+...+.+++.++..+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l 161 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQL 161 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 264
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=39.35 E-value=6.6e+02 Score=29.05 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc
Q 004516 18 KKEALRRSFDIARSQ 32 (747)
Q Consensus 18 ~~~~lrk~l~~Le~~ 32 (747)
+..+||+++..+.+-
T Consensus 152 Ev~~LRreLavLRQl 166 (424)
T PF03915_consen 152 EVQSLRRELAVLRQL 166 (424)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 265
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.81 E-value=3.4e+02 Score=30.34 Aligned_cols=15 Identities=13% Similarity=0.703 Sum_probs=5.9
Q ss_pred hHhhHHHHHHHHHHH
Q 004516 42 QWDDLEEHLDLTKKS 56 (747)
Q Consensus 42 ~l~~le~el~el~~~ 56 (747)
+|+++++++..+.+.
T Consensus 5 EW~eL~~efq~Lqet 19 (330)
T PF07851_consen 5 EWEELQKEFQELQET 19 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 266
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.47 E-value=6.5e+02 Score=31.02 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=3.3
Q ss_pred HhHhhhhHH
Q 004516 127 LNSLSGSLN 135 (747)
Q Consensus 127 L~e~~~eLe 135 (747)
+..++++.+
T Consensus 372 ~~~L~R~~~ 380 (726)
T PRK09841 372 VLRLSRDVE 380 (726)
T ss_pred HHHHHHHHH
Confidence 333333333
No 267
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=38.46 E-value=92 Score=35.14 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 004516 107 GLVQKRIGECKRELQL 122 (747)
Q Consensus 107 ~~le~eI~~le~ELe~ 122 (747)
..++.+|+.+++.+..
T Consensus 147 ~e~Eeris~lEd~~~~ 162 (370)
T PF02994_consen 147 DELEERISELEDRIEE 162 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333333333333333
No 268
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.46 E-value=1.5e+02 Score=34.80 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q 004516 9 SEELRVAESKKEALRRSFDIARSQ 32 (747)
Q Consensus 9 ~~el~~~e~~~~~lrk~l~~Le~~ 32 (747)
++++..++.++..+++++..+.++
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~ 93 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDR 93 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554
No 269
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=38.26 E-value=7.3e+02 Score=29.23 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHH
Q 004516 167 ECCDEIELREKKVGEVQRSIEEHE 190 (747)
Q Consensus 167 e~~~El~~kekel~~~~k~ie~~~ 190 (747)
+....++.....+...+.++..++
T Consensus 218 e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 218 ELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333344444444444444444333
No 270
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=38.14 E-value=5.4e+02 Score=27.71 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=29.1
Q ss_pred HHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 004516 373 HESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKE 430 (747)
Q Consensus 373 ~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~el~E~~ 430 (747)
-+|...+..-++++...+++-+++..+....+.-...+=.+..++....+++..+++.
T Consensus 243 ~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 243 IELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555444445555555555555544443
No 271
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.99 E-value=4.9e+02 Score=26.53 Aligned_cols=24 Identities=0% Similarity=0.011 Sum_probs=11.8
Q ss_pred hhHHHhhHHhHHHHHHHHHHHHHH
Q 004516 375 SNLFQTRTIGYLKELKEKEKHFDS 398 (747)
Q Consensus 375 Le~~~~~~e~~~keleele~~les 398 (747)
+.....+++.++..+..+..++..
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333444445555555555555443
No 272
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.47 E-value=6.6e+02 Score=27.93 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004516 249 IKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELD 285 (747)
Q Consensus 249 i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~ 285 (747)
|+..++|-.=-...+.++++.+.-+..-..+|..-|+
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333444444445555555555444
No 273
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=35.30 E-value=7e+02 Score=28.16 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516 111 KRIGECKRELQLKENELNSLSGSLNLKKEEL 141 (747)
Q Consensus 111 ~eI~~le~ELe~keeeL~e~~~eLe~~eeeL 141 (747)
..+..++.....+...+..|..-|...+..+
T Consensus 336 ~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~ 366 (388)
T PF04912_consen 336 QTLSELESQQSDLQSQLKKWEELLNKVEEKF 366 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444333
No 274
>PRK04325 hypothetical protein; Provisional
Probab=35.15 E-value=2.6e+02 Score=24.14 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=39.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516 264 ELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEEL 315 (747)
Q Consensus 264 ~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~ 315 (747)
+.++.++.+|+.++--.+..++....-+-.+.+.+..+.+.+..+...+.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888888888888888888777777666555443
No 275
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=34.66 E-value=1.2e+02 Score=36.51 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc
Q 004516 21 ALRRSFDIARSQ 32 (747)
Q Consensus 21 ~lrk~l~~Le~~ 32 (747)
.|.+.|...+.+
T Consensus 30 ~l~~~i~~~~~E 41 (619)
T PF03999_consen 30 RLLQSIADAEAE 41 (619)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 276
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.26 E-value=3.4e+02 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004516 106 LGLVQKRIGECKRELQLKENELN 128 (747)
Q Consensus 106 L~~le~eI~~le~ELe~keeeL~ 128 (747)
++++....+.+.+.+.....++.
T Consensus 27 leel~~lQ~~C~ssI~~QkkrLk 49 (330)
T PF07851_consen 27 LEELSKLQDKCSSSISHQKKRLK 49 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344443333333
No 277
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.02 E-value=2.4e+02 Score=24.00 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004516 109 VQKRIGECKRELQLKENE 126 (747)
Q Consensus 109 le~eI~~le~ELe~keee 126 (747)
+..++..+.+++..+..+
T Consensus 59 ~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 59 YKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 278
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=33.27 E-value=80 Score=34.29 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=58.7
Q ss_pred HHHHhhccCCCCCCCCCcccchhHhHhhHHHHHhhchh------------------cCCCCChHHHHHHHHHHHHHHHhh
Q 004516 496 VLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLST------------------VAPEINAQVRDEAMKVAGEWKKKM 557 (747)
Q Consensus 496 VLdai~gf~~~~~~~g~~~~~~~~~r~aCilLLe~L~~------------------~~p~i~~~vke~A~~lA~~WK~ki 557 (747)
|||.|.|++-|.+. +..+...+..+..-+|..|+. ++|.+++.|+--|..+..+|-+-|
T Consensus 210 iLdsVr~WLEPLPD---~SlP~~~IqksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~e~~v~r~A~~LV~eWtrpI 286 (397)
T COG5139 210 ILDSVRGWLEPLPD---KSLPNIKIQKSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKEEKEVRRSAKALVQEWTRPI 286 (397)
T ss_pred hHHHHHhhhccCCC---CCCcchHHHHHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcccHHHHHHHHHHHHHhhccc
Confidence 89999999877643 233445577777777776653 488999999999999999999988
Q ss_pred hhhhcchHHHHHHHHHHhhhCCCCCCChhHHHH
Q 004516 558 RVAVENSLEVLGFLHLLAAYRLAPAFDGEELES 590 (747)
Q Consensus 558 ~~~~~~~lea~gFL~lla~fgl~s~fd~del~~ 590 (747)
-...+|.-+-. -..-+||++-+..
T Consensus 287 ik~s~nyRDk~---------i~~~~F~~E~~~~ 310 (397)
T COG5139 287 IKPSGNYRDKR---------IMQLEFDSEKLRK 310 (397)
T ss_pred cCcCCCcchhh---------hheeecCHHHHHH
Confidence 76655433211 0234678777664
No 279
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=31.93 E-value=5.4e+02 Score=28.63 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004516 27 DIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIE 93 (747)
Q Consensus 27 ~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLe 93 (747)
..|+.+-+. +.++++.+.+.+.+...++.....+...+-.+++...+-...+.....+++..|.
T Consensus 136 aQLDNEKsn---l~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 136 AQLDNEKNN---LIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred Hhhcccccc---eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 4455555555555555555555555533333444444444444433333333333
No 280
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.89 E-value=5.7e+02 Score=26.06 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 98 ELACKKKELGLVQKRIGECKRELQLKE 124 (747)
Q Consensus 98 ele~~k~eL~~le~eI~~le~ELe~ke 124 (747)
.++.++.++......++...+.|..+.
T Consensus 136 ~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345555556666666666666666554
No 281
>PRK02119 hypothetical protein; Provisional
Probab=31.52 E-value=2.9e+02 Score=23.85 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=15.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 85 LVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKEN 125 (747)
Q Consensus 85 ieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~kee 125 (747)
+.+++..+.=.+..++.+..-+..-...|+.+...+..+..
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 282
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.27 E-value=2.5e+02 Score=23.81 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEE 314 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~ 314 (747)
++.++..|+.++--.+..++....-+-.+...+..+++.+..+...+.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777887777777777777777777777777777777666555443
No 283
>PF13514 AAA_27: AAA domain
Probab=30.83 E-value=1.3e+03 Score=29.94 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516 384 GYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKR 420 (747)
Q Consensus 384 ~~~keleele~~leslE~~le~k~keLe~k~k~le~~ 420 (747)
.+...+..++..++.++..+.....++......+...
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555443
No 284
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.77 E-value=9.1e+02 Score=28.13 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004516 265 LLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIG 309 (747)
Q Consensus 265 ~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~ 309 (747)
.+..+++++....++.+.++..+...-.+-.+++++....+.+.-
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsf 430 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSF 430 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 577788888888888887766655555555555555555554433
No 285
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=30.64 E-value=2.5e+02 Score=33.33 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=17.5
Q ss_pred CCCccccccCCccchHhhh---hhhhhcccccccCCcc
Q 004516 661 TSSPVSQFSGAQPQLENQY---KRLRVESLSTIDYTPH 695 (747)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 695 (747)
-+-||..--+++.-|.|.+ .++-.|..-.+|-..|
T Consensus 699 igvPv~viR~~~NsLNNRFlPwd~IETEAvLS~DDDah 736 (907)
T KOG2264|consen 699 IGVPVEVIRVAENSLNNRFLPWDRIETEAVLSLDDDAH 736 (907)
T ss_pred CCCceEEEEcccccccccccCchhhhheeeeecccchh
Confidence 3455655555555565553 3444444444444444
No 286
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=29.73 E-value=4.3e+02 Score=23.97 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHH------HhHHHHHHHhhHHHhhhhHhH
Q 004516 278 ESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQ------QSIKECSKEFQWKKEESISTE 351 (747)
Q Consensus 278 k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~------~~L~e~~kEle~k~~ele~~~ 351 (747)
+-|.+--.-....+..-..++..+++-=.....++.++........+.+..+. ......+..++....+|+..+
T Consensus 3 ~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v 82 (99)
T PF10046_consen 3 RMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTV 82 (99)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHhhHHHHHHHHHH
Q 004516 352 KTIAECSKEVELKKNQF 368 (747)
Q Consensus 352 Kele~~~kele~Ke~ql 368 (747)
..|..|+++||.|=+.+
T Consensus 83 ~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 83 YELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHhhcC
No 287
>PRK00295 hypothetical protein; Provisional
Probab=29.58 E-value=3.2e+02 Score=23.19 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEEL 315 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~ 315 (747)
++.++..|+.++--.+..++.....+-.+.+.+..+.+.+..+...+.+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888877888888888888888888877777777666555443
No 288
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.32 E-value=4.9e+02 Score=24.52 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHH
Q 004516 7 NISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE 47 (747)
Q Consensus 7 ~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le 47 (747)
+|.+++...=.+++.+...+..+...+.. +..+++..+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~---le~q~~e~~ 41 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQ---IDLELREIN 41 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45666666666666666666666666444 444444433
No 289
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.52 E-value=1.2e+03 Score=28.67 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=24.9
Q ss_pred cHHHHhhhCCCCCcchHHHHHhhcCCccceeee
Q 004516 601 TPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLV 633 (747)
Q Consensus 601 a~~L~~~Lgl~~k~~d~I~~LI~~g~~i~Av~~ 633 (747)
.+.--+.++...+-|+....+...+..+..+.+
T Consensus 619 ~~~~~r~~~~~~~~~~~s~k~~~~~~~~~~ss~ 651 (660)
T KOG4302|consen 619 NSEKKRLLSKSSSSPDTSGKLNSPPNEPEFSSY 651 (660)
T ss_pred chhhhcccchhccCCchhhhhcCCCCCcccccc
Confidence 455667777888888888888888888776654
No 290
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=28.34 E-value=7.7e+02 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=19.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhh
Q 004516 535 APEINAQVRDEAMKVAGEWKKKMR 558 (747)
Q Consensus 535 ~p~i~~~vke~A~~lA~~WK~ki~ 558 (747)
+++..|++|-.|.-+..+..++.+
T Consensus 238 ~~pltp~aRisalnivgDllRkvg 261 (333)
T KOG1853|consen 238 DVPLTPDARISALNIVGDLLRKVG 261 (333)
T ss_pred CCCCCchhhHHHHHHHHHHHHHhh
Confidence 446789999999888888888854
No 291
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.27 E-value=4.8e+02 Score=24.04 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004516 91 KIEDCNGELACKKKELGLVQK 111 (747)
Q Consensus 91 eLeElE~ele~~k~eL~~le~ 111 (747)
++..+.-.+..++.++..+.+
T Consensus 66 dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 333333333333333333333
No 292
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.98 E-value=7.5e+02 Score=26.24 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004516 238 EKKELELTQSSIKELWMKFHSEQEKLE 264 (747)
Q Consensus 238 k~~El~~~~~~i~e~~~ele~k~~~l~ 264 (747)
.+.||+..-++|++.+...+.=..++.
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~ 32 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVE 32 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777665554444443
No 293
>PRK00736 hypothetical protein; Provisional
Probab=27.94 E-value=3.5e+02 Score=22.98 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=35.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEE 314 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~ 314 (747)
++.++..|+.++--.+..++.....+-.+.+.+..+.+++..+...+.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777888888888888887777777777766655544
No 294
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.73 E-value=4.8e+02 Score=23.94 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhHhhhhH
Q 004516 117 KRELQLKENELNSLSGSL 134 (747)
Q Consensus 117 e~ELe~keeeL~e~~~eL 134 (747)
+..+..+++.+..++..+
T Consensus 80 e~~i~~lek~~~~l~~~l 97 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQL 97 (110)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 295
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.49 E-value=1.1e+03 Score=28.11 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHhh
Q 004516 305 LNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQ 341 (747)
Q Consensus 305 ~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEle 341 (747)
.++....++....++......+-.++.++-++..-|.
T Consensus 516 ~eel~~alektkQel~~tkarl~stqqslaEke~HL~ 552 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARLASTQQSLAEKEAHLA 552 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHH
Confidence 4444555666667777777777777766665554444
No 296
>PF13166 AAA_13: AAA domain
Probab=27.04 E-value=1.2e+03 Score=28.26 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=11.2
Q ss_pred hhHHHHHHh-HHHHHH
Q 004516 177 KKVGEVQRS-IEEHEK 191 (747)
Q Consensus 177 kel~~~~k~-ie~~~~ 191 (747)
..|+-|++. |.....
T Consensus 256 ~~CpfC~q~~l~~~~~ 271 (712)
T PF13166_consen 256 DTCPFCQQEPLSEERK 271 (712)
T ss_pred CcCCCCCCcCCcHHHH
Confidence 479999995 876554
No 297
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=26.89 E-value=1e+03 Score=27.44 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=3.6
Q ss_pred ccceeeeec
Q 004516 627 SAPSMLVGT 635 (747)
Q Consensus 627 ~i~Av~~~~ 635 (747)
-|.++.+.|
T Consensus 343 ~vtSl~ls~ 351 (459)
T KOG0288|consen 343 RVTSLDLSM 351 (459)
T ss_pred ceeeEeecc
Confidence 334444433
No 298
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=26.66 E-value=8.8e+02 Score=26.59 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 004516 134 LNLKKEE 140 (747)
Q Consensus 134 Le~~eee 140 (747)
++..+..
T Consensus 130 l~~a~~~ 136 (346)
T PRK10476 130 AKLATRT 136 (346)
T ss_pred HHHHHHH
Confidence 3333333
No 299
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.57 E-value=4.4e+02 Score=27.21 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 004516 6 VNISEELRVAESKKEALRRSFDI 28 (747)
Q Consensus 6 ~~l~~el~~~e~~~~~lrk~l~~ 28 (747)
+.|..||.+++.++..+.++-..
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555544443
No 300
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.28 E-value=9.6e+02 Score=26.90 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516 63 DVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC 142 (747)
Q Consensus 63 eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~ 142 (747)
-++..-..+++...+.+.+.-.-+.+.+.+-....-+...+.+...+++-+..++.+-..++-.++....+..+++++-.
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq 165 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQ 165 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHH
Confidence 34344445566666666666555555555555555555555555556655655555555555555555555555555554
Q ss_pred hhh
Q 004516 143 SVQ 145 (747)
Q Consensus 143 ~~~ 145 (747)
++.
T Consensus 166 ~Ln 168 (401)
T PF06785_consen 166 TLN 168 (401)
T ss_pred HHH
Confidence 443
No 301
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=26.03 E-value=9.3e+02 Score=26.68 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Q 004516 232 ETKLESEKKELELTQSSIKELWMKFHSEQEK-LELLQGRVRLHENEVESLEQELD 285 (747)
Q Consensus 232 ~kele~k~~El~~~~~~i~e~~~ele~k~~~-l~~lee~~kele~K~k~~EkeL~ 285 (747)
+++...+..+|+.+.+.-.+.=..|+.+++- +|.+..++..+....+.++..|.
T Consensus 148 e~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 148 EKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333334444444443333333334444333 24666777777777777776665
No 302
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=25.77 E-value=1e+02 Score=28.26 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcccccHHHHhhhCC
Q 004516 566 EVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGF 610 (747)
Q Consensus 566 ea~gFL~lla~fgl~s~fd~del~~L~~~v~~~~~a~~L~~~Lgl 610 (747)
...=|.+++--||-.+....++++.|+..+..+..|......+|-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~ 72 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGA 72 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccH
Confidence 445567799999999999999999999999999999999999983
No 303
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=25.50 E-value=3.3e+02 Score=32.90 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHhHhhhhHHHHHHhHh
Q 004516 125 NELNSLSGSLNLKKEELC 142 (747)
Q Consensus 125 eeL~e~~~eLe~~eeeL~ 142 (747)
..+..+...+...+.+|.
T Consensus 228 ~~~~~l~~~i~~LW~~L~ 245 (619)
T PF03999_consen 228 EKLQELREKIEELWNRLD 245 (619)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 334444444444444443
No 304
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=25.42 E-value=4.3e+02 Score=27.51 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=32.9
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004516 39 FTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKR 112 (747)
Q Consensus 39 l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~e 112 (747)
+...+..++..+..++..++++...-+... .....++..++..+.+.-...-+++..+..++.++..++.+
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q---~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRERKRRQ---EEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555544443322222 11333444555555555555555555555555444444433
No 305
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.34 E-value=5e+02 Score=31.00 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=9.2
Q ss_pred CcchHHHHHhhcCCccce
Q 004516 613 KEPGLQCSTTAEGRSAPS 630 (747)
Q Consensus 613 k~~d~I~~LI~~g~~i~A 630 (747)
-+.+-|-..+.-.-||++
T Consensus 513 ~~~~tvlA~lR~rlqIP~ 530 (907)
T KOG2264|consen 513 LLARTVLAALRYRLQIPT 530 (907)
T ss_pred HHHHHHHHHHHHhhCCCC
Confidence 334444455555556655
No 306
>PRK04406 hypothetical protein; Provisional
Probab=25.23 E-value=4.6e+02 Score=22.81 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 265 LLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEE 314 (747)
Q Consensus 265 ~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~ 314 (747)
.++.|+..|+.+.--.+..++.....+-.+.+++..+.+++..+...+.+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888888888888888888888888887777777766555443
No 307
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.06 E-value=5.2e+02 Score=23.43 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 004516 90 KKIEDCNGELACKKKELGLV 109 (747)
Q Consensus 90 ~eLeElE~ele~~k~eL~~l 109 (747)
..+..++..+..+..++..+
T Consensus 77 ~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 308
>PRK12705 hypothetical protein; Provisional
Probab=24.68 E-value=1.2e+03 Score=27.59 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.1
Q ss_pred HHHHhhhC
Q 004516 602 PKLRQTLG 609 (747)
Q Consensus 602 ~~L~~~Lg 609 (747)
..+++..|
T Consensus 375 aeLlkk~~ 382 (508)
T PRK12705 375 AELARKFN 382 (508)
T ss_pred HHHHHhcC
Confidence 33444433
No 309
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.27 E-value=4.6e+02 Score=30.19 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=5.3
Q ss_pred HHHHHHHHHhh
Q 004516 727 LAELMVNHQIA 737 (747)
Q Consensus 727 ~~~~~~~~~~~ 737 (747)
++-++-|||-.
T Consensus 392 l~ailE~~q~~ 402 (425)
T PRK05431 392 LVAILENYQQA 402 (425)
T ss_pred HHHHHHHCCCC
Confidence 44445555543
No 310
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.98 E-value=7.9e+02 Score=25.14 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=20.4
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004516 39 FTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEI 83 (747)
Q Consensus 39 l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~ 83 (747)
+...+++++..+..++..+.............+++....+..++.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444444443333344444444444433
No 311
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.96 E-value=1.3e+03 Score=27.67 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhcCchhhHHh
Q 004516 303 RELNEIGKYIEELNQDPASKDKE 325 (747)
Q Consensus 303 k~~e~~~~e~e~~~kELe~kek~ 325 (747)
..+...++-|+...++...-+|+
T Consensus 74 ~~L~d~RrlIE~~MErfK~vEke 96 (575)
T KOG2150|consen 74 DSLLDNRRLIEQRMERFKAVEKE 96 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 312
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.76 E-value=1.5e+03 Score=28.17 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004516 186 IEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEK 262 (747)
Q Consensus 186 ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~ 262 (747)
|+.-.+.|-..+.+-.++-+.-+++..+|..++..+.............|+-.+.+|----+ .+.+-+++++..+
T Consensus 72 itt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpeveael~q 146 (916)
T KOG0249|consen 72 ITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPEVEAELAQ 146 (916)
T ss_pred cchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhhhHHHHHH
Confidence 33344456666677777788899999999999999988888777777777666655532222 4444455555443
No 313
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.42 E-value=6.5e+02 Score=23.98 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 004516 18 KKEALRRSFD 27 (747)
Q Consensus 18 ~~~~lrk~l~ 27 (747)
+...|..++.
T Consensus 14 q~QqLq~ql~ 23 (119)
T COG1382 14 QLQQLQQQLQ 23 (119)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 314
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.24 E-value=1.2e+03 Score=27.18 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=6.1
Q ss_pred HHhhhhhHHHHHHHHH
Q 004516 196 KESKISSMRTLIEEYE 211 (747)
Q Consensus 196 ke~~l~~~e~~i~e~~ 211 (747)
|+.++..+....++.+
T Consensus 458 KeeeverLQ~lkgelE 473 (527)
T PF15066_consen 458 KEEEVERLQQLKGELE 473 (527)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 315
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.14 E-value=5e+02 Score=22.57 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELN 316 (747)
Q Consensus 266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~ 316 (747)
++.|+.+|+.+.---++.|+.....+.++...+.....++..+.++|.++.
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 667788888887777788888888888888888888888777777766544
No 316
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=22.57 E-value=7.7e+02 Score=24.53 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHhhHHHhhhhHhH
Q 004516 273 HENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTE 351 (747)
Q Consensus 273 le~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEle~k~~ele~~~ 351 (747)
+--++-..-+.|++.-........+++.++...+.+...+..........+.++..+.+.+.+..+++.++..+++...
T Consensus 27 LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~ 105 (158)
T PF09744_consen 27 LMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEEN 105 (158)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444445555555555444443322222222333444444444555555554444444333
No 317
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.98 E-value=7.9e+02 Score=24.39 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhhhhhhhh
Q 004516 97 GELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKC 151 (747)
Q Consensus 97 ~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~~~l~~~ 151 (747)
++++..+..++.+-.+|.-+......++.++..|-....++-.+=+.+.+.+.++
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eL 138 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMEL 138 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555444444444444444444444433
No 318
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.94 E-value=7e+02 Score=23.78 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=2.2
Q ss_pred HHHHhc
Q 004516 27 DIARSQ 32 (747)
Q Consensus 27 ~~Le~~ 32 (747)
..+.+.
T Consensus 16 QqLq~q 21 (119)
T COG1382 16 QQLQQQ 21 (119)
T ss_pred HHHHHH
Confidence 333333
No 319
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.88 E-value=5.6e+02 Score=22.67 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 53 TKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVL 87 (747)
Q Consensus 53 l~~~iee~~~eL~~k~~elEe~~kele~lE~eiee 87 (747)
+..+|......|.....+|++.......+..+...
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 320
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.87 E-value=1.3e+03 Score=26.78 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=40.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHH
Q 004516 270 VRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQ 330 (747)
Q Consensus 270 ~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~ 330 (747)
++-+-.+.++.-.+|..+.+-+++.+.-++..++++....+.+.+..-++.+.+......+
T Consensus 253 mk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lk 313 (446)
T KOG4438|consen 253 MKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELK 313 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 4444555566666777777777777777777777777777777777666666665554443
No 321
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=21.83 E-value=4.8e+02 Score=27.24 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=63.5
Q ss_pred HHHHhhccCCCCCCCCCcccchhHhHhhHHHHHhhchhc--CCCCChHHHHHHHHHHHHHHHhhhhh--hcchHHHHHHH
Q 004516 496 VLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTV--APEINAQVRDEAMKVAGEWKKKMRVA--VENSLEVLGFL 571 (747)
Q Consensus 496 VLdai~gf~~~~~~~g~~~~~~~~~r~aCilLLe~L~~~--~p~i~~~vke~A~~lA~~WK~ki~~~--~~~~lea~gFL 571 (747)
+..||..|-+..+.. -..|-...++..++-.+.....- ...++....+....+...|..-.... ....-+..-|-
T Consensus 49 l~eAi~~yd~~kg~~-F~sya~~~Ir~~i~dylRk~~k~~~~v~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~eEI~~~~ 127 (218)
T TIGR02895 49 FNEAIESYDSNKGKS-FLSFAKLIIKRRLIDYIRKNQKYQNLLYLDEDYDENPLEFNKSMEEYRNEIENENRRLEILEYK 127 (218)
T ss_pred HHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHhcccccCeeeCCchHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 567778776543311 12233333444444434333211 11233333333334444454332221 12335888999
Q ss_pred HHHhhhCCCCCCChhHHHHHHHHhhcccccHHHHhhhCCC-CCcchHHHHHhhcC
Q 004516 572 HLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFA-DKEPGLQCSTTAEG 625 (747)
Q Consensus 572 ~lla~fgl~s~fd~del~~L~~~v~~~~~a~~L~~~Lgl~-~k~~d~I~~LI~~g 625 (747)
..|..|||. +-+|+..++.|+.+-..|..+... -.=|++.+.|..+.
T Consensus 128 ~~L~~~gi~-------~~dLv~~sPkh~d~r~~~i~ia~~~~~~~~l~~~l~~kk 175 (218)
T TIGR02895 128 KLLKQFGIE-------FVELVKVSPKHRDTRKKAIKIAKVIVENEELLEYLIRKK 175 (218)
T ss_pred HHHHHcCCc-------HHHHhhcCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 999999996 567888888888765555544422 34455555555544
No 322
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.77 E-value=6e+02 Score=25.08 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 357 CSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLE 411 (747)
Q Consensus 357 ~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe 411 (747)
...++...+.||..+-..|..++.. ....+.++..++.++.......+++.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544441 12344444444444444443333333
No 323
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.93 E-value=1.6e+03 Score=27.60 Aligned_cols=21 Identities=5% Similarity=0.093 Sum_probs=10.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHH
Q 004516 177 KKVGEVQRSIEEHEKQLAFKE 197 (747)
Q Consensus 177 kel~~~~k~ie~~~~el~~ke 197 (747)
..++..++++..-.++.+..+
T Consensus 363 ~~~p~~e~~~~~L~R~~~~~~ 383 (726)
T PRK09841 363 SAMPSTQQEVLRLSRDVEAGR 383 (726)
T ss_pred HhccHHHHHHHHHHHHHHHHH
Confidence 344555555555444444443
No 324
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.68 E-value=6e+02 Score=30.46 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 004516 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLA 194 (747)
Q Consensus 159 ~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el~ 194 (747)
+..+..+++....++...++++ ...+++..+..++
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~ 201 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLE 201 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 3444555555555555555555 2444554444333
No 325
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=20.58 E-value=9.4e+02 Score=24.98 Aligned_cols=21 Identities=38% Similarity=0.408 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 004516 79 ESKEIELVLVGKKIEDCNGEL 99 (747)
Q Consensus 79 e~lE~eieele~eLeElE~el 99 (747)
..+++++...+.++.++-..+
T Consensus 146 ~~le~~l~~~k~~ie~vN~~R 166 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEVNRER 166 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 326
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.49 E-value=1.2e+03 Score=25.84 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Q 004516 250 KELWMKFHSEQEKLE-LLQGRVRLHENEVESLEQELD 285 (747)
Q Consensus 250 ~e~~~ele~k~~~l~-~lee~~kele~K~k~~EkeL~ 285 (747)
.+.+-++..|+.++. -|-.++++.+..+++.|++|.
T Consensus 329 ~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~ 365 (406)
T KOG3859|consen 329 NEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELH 365 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554 255556655555555555444
No 327
>PLN02939 transferase, transferring glycosyl groups
Probab=20.38 E-value=1.9e+03 Score=28.25 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHH
Q 004516 4 CTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKE-IESKE 82 (747)
Q Consensus 4 ~~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~ke-le~lE 82 (747)
|.--+..||-.++.+---|+..+.-++.+...+......+..++.+-.-+.+.+.++...+.....++-+...- ++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (977)
T PLN02939 220 CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWW 299 (977)
T ss_pred ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH------HHHhHhhhhHHHHHHhHhhhhhhhhhhhh
Q 004516 83 IELVLVGKKIEDCNGELACKKKELGL---VQKRIGECKRELQLKE------NELNSLSGSLNLKKEELCSVQGWINKCQA 153 (747)
Q Consensus 83 ~eieele~eLeElE~ele~~k~eL~~---le~eI~~le~ELe~ke------eeL~e~~~eLe~~eeeL~~~~~~l~~~~~ 153 (747)
...+.+..-+.......+..---+.. ++.+++.+++-+.... ..++-.+..++..++++...-.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 374 (977)
T PLN02939 300 EKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEI----- 374 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH-----
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 004516 154 NQKELQLLKNLIKECCDEIELREKKVGEVQRS 185 (747)
Q Consensus 154 ~~~~L~~~~~~~ee~~~El~~kekel~~~~k~ 185 (747)
.+-.+.+...++++...-+.+..-.+.
T Consensus 375 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 375 -----HSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhhhc
No 328
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.31 E-value=1.1e+03 Score=25.44 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q 004516 45 DLEEHLDLTKKSL 57 (747)
Q Consensus 45 ~le~el~el~~~i 57 (747)
++..|...+...-
T Consensus 10 el~~h~~~L~~~N 22 (258)
T PF15397_consen 10 ELKKHEDFLTKLN 22 (258)
T ss_pred HHHHHHHHHHHhh
Confidence 3333333333333
No 329
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=20.19 E-value=1e+03 Score=24.90 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516 81 KEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRE 119 (747)
Q Consensus 81 lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~E 119 (747)
....+......+..+..-.+.....+.....++..+...
T Consensus 97 ~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~ 135 (240)
T PF12795_consen 97 LQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
Done!