Query 004516
Match_columns 747
No_of_seqs 317 out of 375
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 17:42:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004516.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1825-1829//hhsearch_pdb/004516hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 96.0 10.0 303 7-315 861-1163(1184)
2 1c1g_A Tropomyosin; contractIl 1.0 1 1 61.5 39.8 283 26-321 1-283 (284)
3 3na7_A HP0958; flagellar bioge 1.0 1 1 46.0 21.1 74 345-418 90-163 (256)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 43.1 26.8 90 174-263 2011-2103(3245)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 39.3 27.7 16 637-652 2862-2877(3245)
6 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 30.1 17.8 168 12-191 909-1077(1080)
7 3oja_B Anopheles plasmodium-re 1.0 1 1 28.9 13.9 119 8-129 461-583 (597)
8 1l8d_A DNA double-strand break 1.0 1 1 28.7 5.7 101 131-243 2-102 (112)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 28.5 13.8 133 5-143 451-583 (597)
10 2efr_A General control protein 1.0 1 1 25.4 18.5 129 8-139 26-154 (155)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=96.02 Aligned_cols=303 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23598999999999999999999850056001544386489999999987999852599999989999999999999999
Q 004516 7 NISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELV 86 (747)
Q Consensus 7 ~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~lk~le~el~el~~kiee~~~eL~~k~~eiEe~~kele~lE~eie 86 (747)
.+..+|..++.++..+...+..++..... +..+...+...+......+.....++......+......+..+..++.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~---Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQ---LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999---999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97756987889999899999999999989899999999988676634788999576644445553433799999999999
Q 004516 87 LVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIK 166 (747)
Q Consensus 87 elk~eLeElE~ele~~k~eL~~le~eI~~~e~ELe~ke~eL~e~~~eLe~~~eeL~~~~~~l~~~~~~~~~L~~~~~~~e 166 (747)
+....+.++...+...+.++..+...+...+..+...+.++.....++.....++......+. .-..++......+.
T Consensus 938 e~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~---~l~~e~~~le~~i~ 1014 (1184)
T 1i84_S 938 EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN---KLTKERKLLEERVS 1014 (1184)
T ss_dssp HHHHC---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_conf 999999999998988999999999999999988888899999999999999998887899999---99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999986697878859999999997775344478879999999850003329999879999876478899999879
Q 004516 167 ECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQ 246 (747)
Q Consensus 167 e~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~ 246 (747)
.....+...+.++....+.+.....++..-+..+......+.+....+...+.++......+.....++......+....
T Consensus 1015 ~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le 1094 (1184)
T 1i84_S 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 979999998876899999999999876999999899899999967788988999999999999998986
Q 004516 247 SSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEEL 315 (747)
Q Consensus 247 ~~i~e~~~ele~k~~~l~~~ee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~ 315 (747)
..+.....+++.....+..++.+++.++.+...++.++......+............++..+...++++
T Consensus 1095 ~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998898789999999999999999999998889999999999999999999999987
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=61.48 Aligned_cols=283 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998500560015443864899999999879998525999999899999999999999999775698788999989999
Q 004516 26 FDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKE 105 (747)
Q Consensus 26 l~~Le~~r~si~~l~~~lk~le~el~el~~kiee~~~eL~~k~~eiEe~~kele~lE~eieelk~eLeElE~ele~~k~e 105 (747)
|..++.+ +..+...+..+...+..+...+..+...+......+......+..+...+......+..+...+......
T Consensus 1 ~~~~~~~---~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (284)
T 1c1g_A 1 MDAIKKK---MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKK 77 (284)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9378999---9998876888999999999999999988988899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999898999999999886766347889995766444455534337999999999999899999998669787885
Q 004516 106 LGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRS 185 (747)
Q Consensus 106 L~~le~eI~~~e~ELe~ke~eL~e~~~eLe~~~eeL~~~~~~l~~~~~~~~~L~~~~~~~ee~~~El~~kekel~~~~k~ 185 (747)
+..+...+......+.....++......+......+......+ ......+......+......+......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (284)
T 1c1g_A 78 ATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA----------DESERGMKVIESRAQKDEEKMEIQEIQ 147 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9877988999999999889889988988999999999999888----------889999998887775106679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999977753444788799999998500033299998799998764788999998799799999988768999999
Q 004516 186 IEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLEL 265 (747)
Q Consensus 186 ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~ 265 (747)
+......+......+......+......+......+......+.....++.....++......+......+..-...+..
T Consensus 148 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (284)
T 1c1g_A 148 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKV 227 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988889988999998899888889989998987887999999999999999999997587788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99999876999999899899999967788988999999999999998986108134
Q 004516 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPAS 321 (747)
Q Consensus 266 ~ee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~ 321 (747)
+...+..+.......+..+......+......+......+..+...+..+...|.+
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 228 LSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99888989988999998899999999999999999998899999999999997436
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=46.01 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63057687688956999887977767788756777658868999999989899999889999989999999997
Q 004516 345 EESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFE 418 (747)
Q Consensus 345 ~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~eeLe~k~k~le 418 (747)
+++....++++....++...+.++......++.+...+......+..++.++......++....++......+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=43.06 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_conf 9986697878859999999997775344478879999999850003329999879999876478899999879---9799
Q 004516 174 LREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQ---SSIK 250 (747)
Q Consensus 174 ~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~---~~i~ 250 (747)
-++.++...+.+++....+|..++.+|...++.+..+..+......+-...+.+++.|..++..-.+-|.... .+=.
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 29999999999999999999999999999999999999999999999999999999999999999999986211313299
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999887689999
Q 004516 251 ELWMKFHSEQEKL 263 (747)
Q Consensus 251 e~~~ele~k~~~l 263 (747)
+....+......+
T Consensus 2091 ~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2091 QQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999725
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=39.29 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=8.4
Q ss_pred CCCCCCCHHHHHHCCC
Q ss_conf 8988994231110235
Q 004516 637 APTNQPDSSLMNLPQY 652 (747)
Q Consensus 637 ~~k~~p~~ll~~y~~~ 652 (747)
++.---.-+|++|+..
T Consensus 2862 VtDd~DrrlL~t~l~~ 2877 (3245)
T 3vkg_A 2862 IDNEFDMRLLYSFLEQ 2877 (3245)
T ss_dssp CCSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 4887899999999999
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=30.13 Aligned_cols=168 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999985005600154438648999999998799985259999998999999999999999997756
Q 004516 12 LRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKK 91 (747)
Q Consensus 12 l~~~e~~~~~lrk~l~~Le~~r~si~~l~~~lk~le~el~el~~kiee~~~eL~~k~~eiEe~~kele~lE~eieelk~e 91 (747)
|+..-...+.+.+....++....+ +..++...+.+...+...+......+......+..-..+++..+.+....+..
T Consensus 909 Lk~ear~~~~l~~~~~~LE~kl~e---Lq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~ 985 (1080)
T 2dfs_A 909 LKIEARSVERYKKLHIGLENKIMQ---LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985 (1080)
T ss_dssp C--------------------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998767789998889999999---99999999999999999998756789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98788999989999999999998989999999998867663478899957664444555343379999999999998999
Q 004516 92 IEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDE 171 (747)
Q Consensus 92 LeElE~ele~~k~eL~~le~eI~~~e~ELe~ke~eL~e~~~eLe~~~eeL~~~~~~l~~~~~~~~~L~~~~~~~ee~~~E 171 (747)
+..++.+++..+.++.....+...++........++.+.-..|+.....|..-...++ ......-++....
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~---------~~~~~~~~~~~~~ 1056 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN---------RRIHDQAKEITET 1056 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999999999999---------9999988877778
Q ss_pred HHHHH-HHHHHHHHHHHHHHH
Q ss_conf 99998-669787885999999
Q 004516 172 IELRE-KKVGEVQRSIEEHEK 191 (747)
Q Consensus 172 l~~ke-kel~~~~k~ie~~~~ 191 (747)
+...- .+--..+.+++..+.
T Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1057 MEKKLVEETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 888789999999999999998
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=28.90 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3598999999999999999999850056001544386----489999999987999852599999989999999999999
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWD----DLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEI 83 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~lk----~le~el~el~~kiee~~~eL~~k~~eiEe~~kele~lE~ 83 (747)
+..++..++.+.....+++......... ....+. ++......+...+.............+......+....+
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDT---NLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK 537 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998899999999998655---5540276611247878889999999886432367888888776554201
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999775698788999989999999999998989999999998867
Q 004516 84 ELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNS 129 (747)
Q Consensus 84 eieelk~eLeElE~ele~~k~eL~~le~eI~~~e~ELe~ke~eL~e 129 (747)
+++..++++.++++.++..+..+..+..+......++..+.+.+..
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1136776648899987310147899888899999999999987437
No 8
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=1.00 E-value=1 Score=28.72 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63478899957664444555343379999999999998999999986697878859999999997775344478879999
Q 004516 131 SGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEY 210 (747)
Q Consensus 131 ~~eLe~~~eeL~~~~~~l~~~~~~~~~L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~ 210 (747)
.+.+....+++......+.+....+..+.+....+......+..-.+.||.|+..|..... ...+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~------------~~~i~~~ 69 (112)
T 1l8d_A 2 KKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHR------------EELLSKY 69 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHH------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH------------HHHHHHH
T ss_conf 4068888889999999999999999999999999999999862599999999892987789------------8899999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999850003329999879999876478899999
Q 004516 211 EEVLKDKERPYDEVKKSLILCETKLESEKKELE 243 (747)
Q Consensus 211 ~~EL~~KEkel~~~~~~ie~~~kele~k~~El~ 243 (747)
..++.....++......+.....++.....++.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=28.48 Aligned_cols=133 Identities=8% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23235989999999999999999998500560015443864899999999879998525999999899999999999999
Q 004516 5 TVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIE 84 (747)
Q Consensus 5 ~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~lk~le~el~el~~kiee~~~eL~~k~~eiEe~~kele~lE~e 84 (747)
.+.+..++...+.....++..+...+.. +...-..+...........++...........+..........+.+
T Consensus 451 ~e~l~~e~~~~~~~i~~l~~~~~~~~~~------l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 524 (597)
T 3oja_B 451 NEQLEAEVNELRAEVQQLTNEQIQQEQL------LQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRE 524 (597)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4999888988999999999999889999------9999998655554027661124787888999999988643236788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99977569878899998999999999999898999999999886766347889995766
Q 004516 85 LVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCS 143 (747)
Q Consensus 85 ieelk~eLeElE~ele~~k~eL~~le~eI~~~e~ELe~ke~eL~e~~~eLe~~~eeL~~ 143 (747)
....++.+.+..++++..+.+...++..++..+..+....++...++.++....+++.+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88887765542011136776648899987310147899888899999999999987437
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=1.00 E-value=1 Score=25.37 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35989999999999999999998500560015443864899999999879998525999999899999999999999999
Q 004516 8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVL 87 (747)
Q Consensus 8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~lk~le~el~el~~kiee~~~eL~~k~~eiEe~~kele~lE~eiee 87 (747)
++.+|.-++.|.+.....+..|+..... +...++.++..-.....+.+....+|......+.+....++..+..+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~---v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~k 102 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKT---VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK 102 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9878878999999999989999999998---8772103033456789989999999999999999999989999978999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7756987889999899999999999989899999999988676634788999
Q 004516 88 VGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKE 139 (747)
Q Consensus 88 lk~eLeElE~ele~~k~eL~~le~eI~~~e~ELe~ke~eL~e~~~eLe~~~e 139 (747)
+...|..++..+...+.....+...++..-.++......+-.+.-++....+
T Consensus 103 LEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 103 LEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 9989999999999999989999999999999998646306888779988634
Done!