Query 004516
Match_columns 747
No_of_seqs 317 out of 375
Neff 6.2
Searched_HMMs 13730
Date Tue Mar 26 17:46:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004516.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1825-1829//hhsearch_scop/004516hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p6va1 a.277.1.1 (A:582-678) 6.3 27 0.002 9.4 -1.5 40 612-653 36-78 (97)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 3.7 1E+02 0.0075 5.2 6.5 35 359-393 20-54 (68)
3 d2gaxa1 c.131.1.1 (A:1-135) Hy 3.1 91 0.0066 5.6 -0.7 72 642-713 35-108 (135)
4 d2nwua1 d.77.1.2 (A:3-144) Hyp 2.6 1.6E+02 0.011 3.9 1.5 23 484-507 6-28 (142)
5 d1w66a1 d.104.1.3 (A:1-216) Li 2.5 1.6E+02 0.012 3.8 0.8 16 569-584 112-127 (216)
6 d1t98a1 a.4.5.65 (A:8-118) Chr 2.4 1.7E+02 0.012 3.6 4.8 68 551-623 5-76 (111)
7 d1ykhb1 a.252.1.1 (B:2-130) RN 2.3 1.8E+02 0.013 3.5 7.6 77 51-127 52-128 (129)
8 d2efva1 a.43.1.12 (A:6-87) Unc 2.3 1.8E+02 0.013 3.4 2.7 39 453-492 10-48 (82)
9 d1ji6a1 b.18.1.3 (A:503-652) d 2.3 1.8E+02 0.013 3.4 0.7 35 638-672 8-46 (150)
10 d2pzza1 d.77.1.2 (A:2-134) Hyp 2.3 1.9E+02 0.013 3.4 0.9 14 491-505 14-27 (133)
No 1
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.27 E-value=27 Score=9.41 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCCCCEEEEEC---CCCCCCCCHHHHHHCCCC
Q ss_conf 886437999963598554045414---589889942311102355
Q 004516 612 DKEPGLQCSTTAEGRSAPSMLVGT---SAPTNQPDSSLMNLPQYS 653 (747)
Q Consensus 612 ~k~~d~I~~LI~~g~~i~Av~~~~---~~~k~~p~~ll~~y~~~~ 653 (747)
+.+..+|++||+..-.++ -|+. ..-+|||.|-|-.||+++
T Consensus 36 ~~Vr~LV~~L~~~~i~~E--EF~~~Lq~~lns~pqP~lvPFLK~s 78 (97)
T d2p6va1 36 ANVKELVQNLLDGKIEAE--DFTSRLYRELNSSPQPYLVPFLKRS 78 (97)
T ss_dssp HHHHHHHHHHHTTSSCHH--HHHHHHHHHTTCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHH--HHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999999983886899--9999999986599972239989970
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=3.66 E-value=1e+02 Score=5.20 Aligned_cols=35 Identities=9% Similarity=-0.107 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988797776778875677765886899999998
Q 004516 359 KEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKE 393 (747)
Q Consensus 359 kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele 393 (747)
.++|+-.--|+.++.-++.=...+..|...++..+
T Consensus 20 ~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae 54 (68)
T d1vp7a_ 20 SAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAE 54 (68)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99867999899999999999999999999999999
No 3
>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.13 E-value=91 Score=5.61 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=47.6
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 9423111023559999888888533224781103865324420234445678532223--66675420001399
Q 004516 642 PDSSLMNLPQYSGMDPSNSTSSPVSQFSGAQPQLENQYKRLRVESLSTIDYTPHALAS--DNLNRSSLATQHGP 713 (747)
Q Consensus 642 p~~ll~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 713 (747)
|--+-..|.-.++-.-.+..+-||--+.|+..||.+-..+..-..+.+++||--+... |.-||..++....-
T Consensus 35 peliG~~y~D~~G~~h~~i~~~Pv~VL~a~~~~L~~l~~~al~~~i~~~~f~~~m~~t~~~~~~~~~~~~~~~~ 108 (135)
T d2gaxa1 35 GEIIGEPYRDGAGNVYNPLSIQPIVVMATDQEALRKIHQRSLERDITTSLYIEEMFATGHDAANRQVFSHFSPD 108 (135)
T ss_dssp GGGBCSCEECTTSCEECCCBSSCEEEEEECHHHHHHHHHHHHHTTCCCEEEEGGGGGCCCHHHHHHHHTTCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEECHHHHHHCCCHHHHHHHHHCCCHH
T ss_conf 65468855299989655557887799977999999999998628996422569987338899999999544710
No 4
>d2nwua1 d.77.1.2 (A:3-144) Hypothetical protein SSo1042 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.59 E-value=1.6e+02 Score=3.87 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=17.9
Q ss_pred HHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 877518990447999850537999
Q 004516 484 DTIKSARDPALLVLHAISGFYPPH 507 (747)
Q Consensus 484 ~AL~~a~DPaklVLdai~gf~~~~ 507 (747)
+-++..-||.| |++||..|||..
T Consensus 6 ~~v~pTED~eK-V~~Ai~nlFP~~ 28 (142)
T d2nwua1 6 AEVRPSEDVNK-VLSAISNFFDFE 28 (142)
T ss_dssp EEECTTBCHHH-HHHHHHTTCCCS
T ss_pred EEECCCCCHHH-HHHHHHHHCCCC
T ss_conf 99748789899-999999868984
No 5
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.54 E-value=1.6e+02 Score=3.80 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=8.3
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 9999986508999999
Q 004516 569 GFLHLLAAYRLAPAFD 584 (747)
Q Consensus 569 gFL~~la~fgl~s~fd 584 (747)
..+..|+.|||....+
T Consensus 112 ~ii~~l~~~gi~~~~~ 127 (216)
T d1w66a1 112 SLIQVCADLGLHAGRV 127 (216)
T ss_dssp HHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 9999987514421122
No 6
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.44 E-value=1.7e+02 Score=3.65 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999996254211608899999998650---89999994679999997213-34418888540788886437999963
Q 004516 551 GEWKKKMRVAVENSLEVLGFLHLLAAY---RLAPAFDGEELESLLRIVAQ-HRQTPKLRQTLGFADKEPGLQCSTTA 623 (747)
Q Consensus 551 ~~WK~ki~~~~~~~le~~gFL~~la~f---gl~s~fd~del~~L~~~va~-~~~a~~L~~~LGl~~k~~d~I~~LI~ 623 (747)
+.|-++-...-.-|.+.++||.-++++ ....++..+++.++|.-|+. ..|+.+-. .-+...-|+.|++
T Consensus 5 V~w~r~~~fsL~L~terLaFLlaIa~~n~er~d~e~~E~~LiD~F~~Vs~~feq~~et~-----~~RANnAINdlv~ 76 (111)
T d1t98a1 5 VAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETI-----GVRANNAINDMVR 76 (111)
T ss_dssp HHHHHHHTCCEEECHHHHHHHHHHHHHHHSCCSSCBCHHHHHHHHHHHHHHTTCCSTTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHHHHH
T ss_conf 87998716000386899999999999801644131014489999999986443220059-----8998889999999
No 7
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.32 E-value=1.8e+02 Score=3.46 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998799985259999998999999999999999997756987889999899999999999989899999999988
Q 004516 51 DLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENEL 127 (747)
Q Consensus 51 ~el~~kiee~~~eL~~k~~eiEe~~kele~lE~eieelk~eLeElE~ele~~k~eL~~le~eI~~~e~ELe~ke~eL 127 (747)
......+.++...|..+.++|+.....+......-+.-...|.+++.+......++.....+-+.+-..+...=.++
T Consensus 52 e~f~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~i 128 (129)
T d1ykhb1 52 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98988999999999999824999998589999999999999999999999999999999999999999999999975
No 8
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=2.30 E-value=1.8e+02 Score=3.43 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC
Q ss_conf 8500258917899999873101344453378877518990
Q 004516 453 DPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDP 492 (747)
Q Consensus 453 ~~~c~~Md~~gL~~~~~~~~k~~~~lr~ev~~AL~~a~DP 492 (747)
+.+|..||++.+|-|+- ...+..++.-++..-.-.++-|
T Consensus 10 f~L~~~id~r~lRy~LH-klenl~~IdpeiL~ka~e~~K~ 48 (82)
T d2efva1 10 FYLYKNIDGRKLRYLLH-KLENVENVDIDTLRRAIEAEKK 48 (82)
T ss_dssp EEESSCCCHHHHHHHHH-HGGGCCCCCHHHHHHHHHSCCC
T ss_pred EEEEECCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHCCCC
T ss_conf 88766177889999999-9811688998999998746766
No 9
>d1ji6a1 b.18.1.3 (A:503-652) delta-Endotoxin, C-terminal domain {Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]}
Probab=2.29 E-value=1.8e+02 Score=3.41 Aligned_cols=35 Identities=6% Similarity=-0.135 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHCCCC----CCCCCCCCCCCCCCCCCCC
Q ss_conf 9889942311102355----9999888888533224781
Q 004516 638 PTNQPDSSLMNLPQYS----GMDPSNSTSSPVSQFSGAQ 672 (747)
Q Consensus 638 ~k~~p~~ll~~y~~~~----~~~~~~~~~~~~~~~~~~~ 672 (747)
||++-.|..|+|-..+ +.+|-.+|++.|.+.....
T Consensus 8 dkITQIPaVKa~~l~~~~~VvkGPG~TGGdlv~l~~~~~ 46 (150)
T d1ji6a1 8 EKITQLPVVKAYALSSGASIIEGPGFTGGNLLFLKESSN 46 (150)
T ss_dssp SSEEEEEGGGCSEECTTEEEECCCSSSSSCEEEESSCCS
T ss_pred CCEEEECEEEEEECCCCCEEEECCCCCCCCEEEECCCCC
T ss_conf 860667638982759996899899978860789825897
No 10
>d2pzza1 d.77.1.2 (A:2-134) Hypotheical protein MJ1564 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=2.26 E-value=1.9e+02 Score=3.37 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHCCCC
Q ss_conf 904479998505379
Q 004516 491 DPALLVLHAISGFYP 505 (747)
Q Consensus 491 DPaklVLdai~gf~~ 505 (747)
||-| |++||..|||
T Consensus 14 D~ek-V~~Ai~nifP 27 (133)
T d2pzza1 14 DKYK-VKKAILNIFP 27 (133)
T ss_dssp CHHH-HHHHHHHHCT
T ss_pred CHHH-HHHHHHHHCC
T ss_conf 9899-9999998689
Done!