BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004517
(747 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JIR0|RIMB1_RAT Peripheral-type benzodiazepine receptor-associated protein 1
OS=Rattus norvegicus GN=Bzrap1 PE=1 SV=2
Length = 1847
Score = 36.6 bits (83), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 542 ELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQE 601
EL+ +LL +++ERD +L ++ LE+ E MRK A+ + +EE +A L+
Sbjct: 402 ELKGQLLGVTQERDSALRKSQGLQSKLESLEQVLEHMRKVAQRRQQLEEEHEQARLS--- 458
Query: 602 VIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKF 656
+ EK + +L Q QAE + + +DS+Q + + R E+F
Sbjct: 459 -LQEKQEEVRRLQQAQAEAKREHEGAVQLLESTLDSMQARVRELEGQCRSQTERF 512
>sp|Q9GLC0|APOE_TUPGL Apolipoprotein E OS=Tupaia glis GN=APOE PE=2 SV=1
Length = 313
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 454 LLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQ 513
L+EE +++ K K L E + M+E E Q R +KE +AA R G D M++++
Sbjct: 77 LMEETMKEVKAYKAEL----EEQLGPMKE-ETQARLSKELQAAQARLGAD----MEDVRT 127
Query: 514 MLAHAK-EANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAV 560
LA + E + M RA L++ R+++ RLL +E+ K LAV
Sbjct: 128 RLAQYRSEVHTMLGQSTEELRARLSSHLRKMRKRLLRDAEDLQKRLAV 175
>sp|Q497I4|KRT35_MOUSE Keratin, type I cuticular Ha5 OS=Mus musculus GN=Krt35 PE=2 SV=1
Length = 455
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 40/268 (14%)
Query: 424 ENSVNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREV 483
E +NG I DD T+ C+ DL E +E K L K E +N +R
Sbjct: 197 EADINGLRRILDDLTL----------CKADL-EAQVESLKEELLCLKKNHEEEVNSLR-C 244
Query: 484 EIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEAREL 543
++ +R E AA +D+ +DE++ E N A + Y T+ EL
Sbjct: 245 QLGDRLNVEVDAAP---PVDLNRVLDEMRCQYETLVENNRRDAEDWYD------TQTEEL 295
Query: 544 QNRLLSLSEERDKSLAVLDEMRET---LEARLAAAEDMRKEAEEEKFEKEESARASLAEQ 600
+++S SE+ + + E+R T LE L A + MR + E E + LA+
Sbjct: 296 NQQVVSSSEQLQSCQSDIIELRRTVNSLEIELQAQQSMRDALDSTLAETEGRYSSQLAQM 355
Query: 601 EVIMEKVVQESKLLQQQAEENSKLREF--LMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658
+ ++ V ES+L + +A+ + +E+ L+D V L+ EI+ R L E D
Sbjct: 356 QCMIGNV--ESQLGEIRADLERQNQEYQVLLD---VRARLECEINT----YRGLLESEDS 406
Query: 659 RVPLSK-----SVSSSQTTCILASSGSS 681
++P + S S S C+ A S S+
Sbjct: 407 KLPCNPCAPDYSSSKSCLPCLPAVSCST 434
>sp|P02650|APOE_RAT Apolipoprotein E OS=Rattus norvegicus GN=Apoe PE=1 SV=2
Length = 312
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 454 LLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQ 513
L+E+ + + K KK L + + V E + R AKE +AA R G D M++L+
Sbjct: 73 LMEDTMTEVKAYKKELEEQLGPVAE-----ETRARLAKEVQAAQARLGAD----MEDLRN 123
Query: 514 MLAHAK-EANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAV 560
L + E N M R+ L+T R+++ RL+ +++ K LAV
Sbjct: 124 RLGQYRNEVNTMLGQSTEELRSRLSTHLRKMRKRLMRDADDLQKRLAV 171
>sp|Q03247|APOE_BOVIN Apolipoprotein E OS=Bos taurus GN=APOE PE=2 SV=1
Length = 316
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 454 LLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQ 513
L+EE +++ K K+ L E + M + E Q R +KE +AA R G D M++L+
Sbjct: 80 LMEETMKEVKAYKEEL----EGQLGPMAQ-ETQARVSKELQAAQARLGSD----MEDLRN 130
Query: 514 MLAHAKEANDMHAGEIYGE-RAILATEARELQNRLLSLSEERDKSLAV 560
LA + G+ E RA +A+ R+L RLL +++ K LAV
Sbjct: 131 RLAQYRSEVQAMLGQSTEELRARMASHLRKLPKRLLRDADDLKKRLAV 178
>sp|Q92764|KRT35_HUMAN Keratin, type I cuticular Ha5 OS=Homo sapiens GN=KRT35 PE=2 SV=5
Length = 455
Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 38/264 (14%)
Query: 424 ENSVNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREV 483
E+ +NG I DD T+ C+ DL E +E K L K E +N +R
Sbjct: 197 ESDINGLRRILDDLTL----------CKSDL-EAQVESLKEELLCLKKNHEEEVNSLR-C 244
Query: 484 EIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEAREL 543
++ +R E AA +D+ ++E++ E N A + L T++ EL
Sbjct: 245 QLGDRLNVEVDAAP---PVDLNRVLEEMRCQYETLVENNRRDAEDW------LDTQSEEL 295
Query: 544 QNRLLSLSEERDKSLAVLDEMRET---LEARLAAAEDMRKEAEEEKFEKEESARASLAEQ 600
+++S SE+ A + E+R T LE L A MR E E E + LA+
Sbjct: 296 NQQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHSMRDALESTLAETEARYSSQLAQM 355
Query: 601 EVIMEKVVQESKLLQQQAEENSKLREFLMD-RGRVVDSLQGEISVICQDVRLLKEKFDER 659
+ ++ V + ++ E ++ + L+D R R L+ EI+ R L E D +
Sbjct: 356 QCMITNVEAQLAEIRADLERQNQEYQVLLDVRAR----LECEINT----YRGLLESEDSK 407
Query: 660 VPLSK-----SVSSSQTTCILASS 678
+P + S S S C+ A+S
Sbjct: 408 LPCNPCAPDYSPSKSCLPCLPAAS 431
>sp|Q0P5J7|KRT35_BOVIN Keratin, type I cuticular Ha5 OS=Bos taurus GN=KRT35 PE=2 SV=2
Length = 454
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 418 DLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVM 477
D +K E V+ + +E D + +C+ DL E +E K L K E +
Sbjct: 180 DFRTKYETEVSMRQLVESDMNGLRRILDDLTLCKADL-EAQVESLKEELLCLKKNHEEEV 238
Query: 478 NMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILA 537
N +R ++ +R E AA +D+ ++E++ E N A + +
Sbjct: 239 NSLR-CQLGDRLNVEVDAAPP---VDLNRVLNEMRCQYETLVENNRREAEDWFN------ 288
Query: 538 TEARELQNRLLSLSEERDKSLAVLDEMRET---LEARLAAAEDMRKEAEEEKFEKEESAR 594
T+ EL +++S SE+ A + E+R T LE L A MR E E E
Sbjct: 289 TQTEELNQQVVSSSEQLQSYQAEIIELRRTVNALEIELQAQHSMRDALESTLAETEARYS 348
Query: 595 ASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMD-RGRV 634
+ LA+ + ++ V + ++ E ++ + L+D R R+
Sbjct: 349 SQLAQMQGLIGNVESQLAEIRCDLERQNQEYQVLLDVRARL 389
>sp|B0LKP1|KRT35_SHEEP Keratin, type I cuticular Ha5 OS=Ovis aries GN=KRT35 PE=2 SV=1
Length = 455
Score = 32.7 bits (73), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 112/269 (41%), Gaps = 26/269 (9%)
Query: 418 DLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVM 477
D +K E V + +E D + +C+ DL E +E K L K E +
Sbjct: 181 DFRTKYETEVTMRQLVESDMNGLRRILDDLTLCKADL-EAQVESLKEELLCLKKNHEEEV 239
Query: 478 NMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILA 537
N +R ++ +R E AA +D+ ++E++ E N A + +
Sbjct: 240 NSLR-CQLGDRLNVEVDAAP---PVDLNRVLNEMRCQYETLVENNRREAEDWFN------ 289
Query: 538 TEARELQNRLLSLSEERDKSLAVLDEMRET---LEARLAAAEDMRKEAEEEKFEKEESAR 594
T+ EL +++S SE+ A + E+R T LE L A MR E E E
Sbjct: 290 TQTEELNQQVVSSSEQLQSYQAEIIELRRTVNALEIELQAQHSMRDALESTLAETEARYS 349
Query: 595 ASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKE 654
+ LA+ + ++ V + ++ E ++ + L+D V L+ EIS R L +
Sbjct: 350 SQLAQMQGLIGNVESQLAEIRCDLERQNQEYQVLLD---VRARLECEIST----YRGLLD 402
Query: 655 KFDERVPLS-----KSVSSSQTTCILASS 678
D ++P + S S S C+ A+S
Sbjct: 403 SEDCKLPCNPCAPDHSPSKSCLPCLPAAS 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,147,291
Number of Sequences: 539616
Number of extensions: 10281365
Number of successful extensions: 49989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 1693
Number of HSP's that attempted gapping in prelim test: 43040
Number of HSP's gapped (non-prelim): 5818
length of query: 747
length of database: 191,569,459
effective HSP length: 125
effective length of query: 622
effective length of database: 124,117,459
effective search space: 77201059498
effective search space used: 77201059498
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)