Query 004517
Match_columns 747
No_of_seqs 29 out of 31
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 00:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02845 CUE: CUE domain; Int 96.5 0.0042 9.2E-08 46.8 4.1 38 5-42 3-40 (42)
2 smart00546 CUE Domain that may 96.3 0.0052 1.1E-07 46.3 4.0 39 4-42 3-41 (43)
3 KOG0994 Extracellular matrix g 96.1 0.76 1.7E-05 55.8 21.3 188 451-650 1543-1748(1758)
4 TIGR00606 rad50 rad50. This fa 95.9 1.4 3E-05 52.9 23.1 115 468-585 786-903 (1311)
5 KOG0994 Extracellular matrix g 95.4 1.9 4.1E-05 52.7 21.2 54 607-662 1694-1753(1758)
6 PRK11637 AmiB activator; Provi 94.9 6.2 0.00013 41.8 21.4 36 545-580 159-194 (428)
7 TIGR02169 SMC_prok_A chromosom 94.9 8.1 0.00018 43.9 23.5 20 234-253 27-47 (1164)
8 cd08915 V_Alix_like Protein-in 94.7 2.5 5.5E-05 43.3 17.4 113 451-564 71-219 (342)
9 TIGR02168 SMC_prok_B chromosom 94.0 14 0.00029 41.9 23.7 15 453-467 687-701 (1179)
10 COG1196 Smc Chromosome segrega 93.7 13 0.00027 44.6 22.7 32 451-482 717-748 (1163)
11 PF13949 ALIX_LYPXL_bnd: ALIX 93.4 8.6 0.00019 37.9 18.9 112 452-563 24-169 (296)
12 TIGR01005 eps_transp_fam exopo 93.3 13 0.00028 42.0 20.9 28 604-631 371-398 (754)
13 PF07888 CALCOCO1: Calcium bin 92.8 22 0.00047 40.7 23.1 24 638-661 436-459 (546)
14 cd09235 V_Alix Middle V-domain 92.5 6.9 0.00015 40.8 16.4 109 451-559 70-212 (339)
15 PF12128 DUF3584: Protein of u 92.5 25 0.00053 42.5 22.9 45 542-586 432-492 (1201)
16 PF10174 Cast: RIM-binding pro 92.2 19 0.00041 42.4 21.0 206 449-658 321-539 (775)
17 cd09234 V_HD-PTP_like Protein- 91.4 20 0.00043 37.4 19.0 114 450-563 72-216 (337)
18 KOG0612 Rho-associated, coiled 91.3 35 0.00075 42.5 22.1 123 530-655 507-645 (1317)
19 PHA02562 46 endonuclease subun 91.1 24 0.00053 37.7 21.6 31 532-562 300-330 (562)
20 TIGR02680 conserved hypothetic 90.8 50 0.0011 40.8 23.4 86 536-621 894-979 (1353)
21 PRK11281 hypothetical protein; 90.4 17 0.00038 44.2 18.9 197 450-658 36-252 (1113)
22 COG1196 Smc Chromosome segrega 90.3 48 0.001 39.9 22.8 34 207-248 9-42 (1163)
23 PRK02224 chromosome segregatio 89.8 42 0.00091 38.3 22.9 43 526-568 594-636 (880)
24 KOG0996 Structural maintenance 89.5 16 0.00036 44.9 17.6 31 630-660 598-636 (1293)
25 PRK02224 chromosome segregatio 88.9 48 0.001 37.9 23.4 16 635-650 594-609 (880)
26 TIGR03185 DNA_S_dndD DNA sulfu 88.8 23 0.00049 39.8 17.2 82 502-587 205-286 (650)
27 COG0419 SbcC ATPase involved i 88.5 57 0.0012 38.1 23.8 31 597-627 656-686 (908)
28 KOG0946 ER-Golgi vesicle-tethe 88.3 68 0.0015 38.8 21.5 125 532-661 738-869 (970)
29 KOG0612 Rho-associated, coiled 87.6 67 0.0015 40.2 20.8 94 499-592 550-659 (1317)
30 TIGR00606 rad50 rad50. This fa 86.4 51 0.0011 40.2 19.3 40 205-250 7-48 (1311)
31 PF05667 DUF812: Protein of un 86.4 44 0.00094 38.4 17.7 35 449-483 327-361 (594)
32 PF10174 Cast: RIM-binding pro 86.3 80 0.0017 37.6 21.0 116 531-646 336-492 (775)
33 PF04156 IncA: IncA protein; 86.0 31 0.00067 32.5 15.3 111 503-628 78-191 (191)
34 PF12128 DUF3584: Protein of u 85.4 97 0.0021 37.7 25.1 46 450-495 607-652 (1201)
35 COG1322 Predicted nuclease of 84.1 37 0.0008 37.9 15.5 38 614-658 152-189 (448)
36 KOG4673 Transcription factor T 84.0 32 0.0007 40.9 15.4 75 567-641 413-503 (961)
37 PHA02562 46 endonuclease subun 83.5 68 0.0015 34.4 19.9 20 232-251 29-48 (562)
38 TIGR02680 conserved hypothetic 83.3 1.3E+02 0.0028 37.4 22.1 10 311-320 630-639 (1353)
39 TIGR01005 eps_transp_fam exopo 81.9 98 0.0021 35.2 18.0 23 636-658 379-401 (754)
40 cd09238 V_Alix_like_1 Protein- 81.8 73 0.0016 33.5 19.2 115 451-566 73-223 (339)
41 PRK10929 putative mechanosensi 81.8 1.2E+02 0.0026 37.6 19.5 186 453-658 26-233 (1109)
42 PRK04778 septation ring format 81.7 95 0.0021 34.8 20.1 37 621-658 457-494 (569)
43 PF07888 CALCOCO1: Calcium bin 81.6 1.1E+02 0.0023 35.4 23.4 41 618-658 342-382 (546)
44 PLN02939 transferase, transfer 81.6 1.1E+02 0.0024 37.4 19.1 95 504-613 298-401 (977)
45 PRK04863 mukB cell division pr 81.1 1.7E+02 0.0036 37.2 21.7 58 502-564 317-374 (1486)
46 PF10168 Nup88: Nuclear pore c 80.1 29 0.00063 40.4 13.4 19 300-318 380-398 (717)
47 PRK06568 F0F1 ATP synthase sub 80.1 26 0.00056 34.0 11.1 70 554-623 26-95 (154)
48 PF09755 DUF2046: Uncharacteri 79.5 47 0.001 35.9 13.8 121 541-673 80-216 (310)
49 KOG0161 Myosin class II heavy 79.4 2.2E+02 0.0047 37.4 21.5 33 464-496 1379-1411(1930)
50 PRK11519 tyrosine kinase; Prov 78.2 1.1E+02 0.0025 35.0 17.1 27 604-630 365-391 (719)
51 PRK06231 F0F1 ATP synthase sub 78.2 30 0.00064 34.3 11.2 19 601-619 132-150 (205)
52 PF10186 Atg14: UV radiation r 77.3 74 0.0016 31.0 13.5 16 507-522 21-36 (302)
53 PF04111 APG6: Autophagy prote 77.2 16 0.00035 38.3 9.5 26 540-565 11-36 (314)
54 PRK12704 phosphodiesterase; Pr 76.9 97 0.0021 34.9 15.9 10 613-622 177-186 (520)
55 COG1340 Uncharacterized archae 76.2 1.2E+02 0.0026 32.8 17.6 74 503-583 135-210 (294)
56 CHL00019 atpF ATP synthase CF0 75.5 43 0.00092 32.1 11.1 26 597-622 104-129 (184)
57 TIGR01069 mutS2 MutS2 family p 75.2 40 0.00087 39.4 12.8 13 9-21 30-42 (771)
58 PTZ00266 NIMA-related protein 74.6 42 0.00092 40.9 13.1 7 53-59 24-30 (1021)
59 PRK00409 recombination and DNA 74.5 44 0.00096 39.1 12.9 16 8-23 29-44 (782)
60 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.0 73 0.0016 29.3 15.9 49 534-582 62-110 (132)
61 PF15070 GOLGA2L5: Putative go 74.0 1.8E+02 0.0039 33.8 20.2 126 504-640 144-272 (617)
62 PRK00488 pheS phenylalanyl-tRN 73.6 23 0.0005 38.2 9.7 53 528-584 31-84 (339)
63 PRK11637 AmiB activator; Provi 73.0 1.4E+02 0.003 32.0 22.2 26 453-478 57-82 (428)
64 PF09726 Macoilin: Transmembra 72.7 2E+02 0.0044 33.8 21.2 41 536-580 465-505 (697)
65 PRK05759 F0F1 ATP synthase sub 71.2 73 0.0016 29.2 11.1 23 597-619 84-106 (156)
66 PF10168 Nup88: Nuclear pore c 71.2 87 0.0019 36.7 14.2 58 527-584 582-640 (717)
67 PRK14474 F0F1 ATP synthase sub 71.0 53 0.0012 33.4 11.2 46 596-646 84-129 (250)
68 PF11932 DUF3450: Protein of u 70.7 1.2E+02 0.0026 30.3 14.8 74 526-603 44-117 (251)
69 PF00038 Filament: Intermediat 70.3 1.2E+02 0.0027 30.4 19.8 71 449-519 53-137 (312)
70 PRK09841 cryptic autophosphory 70.0 2E+02 0.0044 33.1 16.6 21 610-630 371-391 (726)
71 PRK08475 F0F1 ATP synthase sub 69.9 71 0.0015 30.5 11.2 22 599-620 104-125 (167)
72 PF15070 GOLGA2L5: Putative go 69.1 1.8E+02 0.004 33.7 16.0 146 511-658 2-171 (617)
73 TIGR03321 alt_F1F0_F0_B altern 68.7 66 0.0014 32.2 11.1 81 561-646 48-129 (246)
74 KOG4657 Uncharacterized conser 68.5 1.7E+02 0.0036 31.1 15.0 26 543-568 105-130 (246)
75 KOG0161 Myosin class II heavy 68.5 3.9E+02 0.0084 35.3 22.0 109 451-570 916-1031(1930)
76 KOG4403 Cell surface glycoprot 68.4 81 0.0018 36.1 12.7 49 474-548 242-290 (575)
77 PRK13461 F0F1 ATP synthase sub 68.1 88 0.0019 29.1 11.1 48 596-648 84-131 (159)
78 PF05701 WEMBL: Weak chloropla 68.1 2.1E+02 0.0045 32.1 21.4 189 455-647 46-263 (522)
79 TIGR01000 bacteriocin_acc bact 67.9 1.7E+02 0.0037 31.5 14.7 22 637-658 240-261 (457)
80 PF05911 DUF869: Plant protein 67.8 1.4E+02 0.003 35.7 14.9 140 453-606 592-751 (769)
81 PRK13454 F0F1 ATP synthase sub 67.4 79 0.0017 30.6 11.0 30 561-590 60-89 (181)
82 CHL00118 atpG ATP synthase CF0 67.1 92 0.002 29.2 11.1 21 599-619 104-124 (156)
83 PF05622 HOOK: HOOK protein; 67.1 4.7 0.0001 45.7 3.2 23 529-551 205-227 (713)
84 PLN03188 kinesin-12 family pro 66.9 3E+02 0.0065 35.0 17.8 60 477-550 943-1005(1320)
85 KOG0250 DNA repair protein RAD 66.8 3.1E+02 0.0067 34.3 17.7 46 539-584 289-337 (1074)
86 PRK10361 DNA recombination pro 66.6 1.7E+02 0.0036 33.3 14.7 28 595-622 110-138 (475)
87 PF02841 GBP_C: Guanylate-bind 66.2 1.3E+02 0.0027 31.0 12.7 7 524-530 172-178 (297)
88 PRK03918 chromosome segregatio 65.8 2.5E+02 0.0054 32.1 22.1 18 233-250 26-43 (880)
89 PRK14475 F0F1 ATP synthase sub 65.8 98 0.0021 29.3 11.1 16 630-645 118-133 (167)
90 PF10473 CENP-F_leu_zip: Leuci 65.1 1.1E+02 0.0024 29.6 11.4 58 529-586 57-117 (140)
91 PRK07352 F0F1 ATP synthase sub 65.1 1E+02 0.0022 29.2 11.1 42 599-645 101-142 (174)
92 PRK14472 F0F1 ATP synthase sub 64.3 1.1E+02 0.0024 29.1 11.1 64 561-624 61-125 (175)
93 PTZ00266 NIMA-related protein 64.2 54 0.0012 40.0 11.1 6 247-252 225-230 (1021)
94 PF06008 Laminin_I: Laminin Do 63.4 1.7E+02 0.0037 29.4 19.0 32 553-584 128-160 (264)
95 PRK09039 hypothetical protein; 63.1 2.1E+02 0.0047 30.5 18.5 94 535-631 113-210 (343)
96 PTZ00121 MAEBL; Provisional 62.9 3.3E+02 0.0071 35.6 17.1 48 158-205 628-675 (2084)
97 PF05262 Borrelia_P83: Borreli 61.7 1.2E+02 0.0027 34.4 12.7 24 619-642 318-341 (489)
98 cd09236 V_AnPalA_UmRIM20_like 61.4 2.2E+02 0.0048 30.1 19.0 113 451-564 72-221 (353)
99 KOG0250 DNA repair protein RAD 61.3 4.2E+02 0.009 33.2 21.4 35 635-669 417-455 (1074)
100 PF05529 Bap31: B-cell recepto 61.2 1.6E+02 0.0034 28.3 13.7 54 541-595 89-150 (192)
101 PRK00409 recombination and DNA 61.1 1.2E+02 0.0027 35.6 12.9 12 249-260 280-291 (782)
102 PF10482 CtIP_N: Tumour-suppre 61.0 1.2E+02 0.0026 29.4 10.5 84 538-628 14-119 (120)
103 PF14257 DUF4349: Domain of un 60.5 29 0.00062 34.5 6.9 64 506-572 102-165 (262)
104 PRK09173 F0F1 ATP synthase sub 60.4 1.5E+02 0.0032 27.7 11.0 57 557-613 27-83 (159)
105 cd09237 V_ScBro1_like Protein- 60.1 2.3E+02 0.005 29.8 18.1 119 496-614 118-287 (356)
106 PRK10884 SH3 domain-containing 58.6 2E+02 0.0044 29.1 12.4 43 535-577 90-132 (206)
107 KOG1265 Phospholipase C [Lipid 58.6 1.3E+02 0.0028 37.2 12.5 91 525-620 1076-1175(1189)
108 KOG0239 Kinesin (KAR3 subfamil 58.3 3.7E+02 0.008 31.7 16.3 25 616-647 297-321 (670)
109 PRK14471 F0F1 ATP synthase sub 57.8 1.7E+02 0.0036 27.5 11.1 15 631-645 117-131 (164)
110 PRK13460 F0F1 ATP synthase sub 57.8 1.6E+02 0.0036 27.9 11.1 87 558-649 56-143 (173)
111 KOG2002 TPR-containing nuclear 56.1 4.9E+02 0.011 32.4 18.8 27 504-530 753-779 (1018)
112 PF04156 IncA: IncA protein; 55.3 1.9E+02 0.004 27.3 13.4 52 536-591 79-130 (191)
113 KOG0996 Structural maintenance 55.3 5.5E+02 0.012 32.8 22.4 180 466-657 378-573 (1293)
114 PTZ00121 MAEBL; Provisional 55.3 6.2E+02 0.014 33.4 19.3 10 547-556 1625-1634(2084)
115 COG5278 Predicted periplasmic 54.8 78 0.0017 32.2 8.9 90 529-621 72-169 (207)
116 KOG2412 Nuclear-export-signal 54.7 1.4E+02 0.003 34.9 11.6 26 355-382 14-39 (591)
117 PF00038 Filament: Intermediat 54.4 2.4E+02 0.0053 28.4 20.3 56 466-521 49-104 (312)
118 TIGR03319 YmdA_YtgF conserved 53.5 3.8E+02 0.0083 30.3 16.6 15 533-547 64-78 (514)
119 PF07795 DUF1635: Protein of u 53.4 84 0.0018 32.5 8.9 52 561-616 3-54 (214)
120 PLN03086 PRLI-interacting fact 53.4 73 0.0016 36.8 9.3 64 571-635 11-77 (567)
121 PRK14473 F0F1 ATP synthase sub 53.3 2E+02 0.0043 27.0 11.1 47 597-648 88-134 (164)
122 COG2433 Uncharacterized conser 52.9 4.6E+02 0.01 31.3 15.4 94 531-628 415-514 (652)
123 PRK10246 exonuclease subunit S 52.4 5.1E+02 0.011 31.5 23.2 33 538-570 777-809 (1047)
124 PRK07353 F0F1 ATP synthase sub 51.9 1.8E+02 0.004 26.2 11.1 84 560-648 47-131 (140)
125 TIGR01010 BexC_CtrB_KpsE polys 51.9 3E+02 0.0064 28.6 14.6 28 604-631 273-300 (362)
126 KOG0978 E3 ubiquitin ligase in 51.7 5E+02 0.011 31.2 18.8 200 458-661 259-486 (698)
127 PRK15365 type III secretion sy 51.7 1.7E+02 0.0036 27.9 9.7 77 536-615 7-86 (107)
128 PF06120 Phage_HK97_TLTM: Tail 51.6 2.7E+02 0.0058 30.0 12.5 71 488-561 41-111 (301)
129 PF05781 MRVI1: MRVI1 protein; 51.5 1E+02 0.0023 35.5 10.1 56 541-603 191-246 (538)
130 KOG0163 Myosin class VI heavy 51.3 5.7E+02 0.012 31.7 19.0 40 132-171 256-295 (1259)
131 PF05266 DUF724: Protein of un 51.3 2.7E+02 0.0058 27.9 12.8 44 539-583 87-130 (190)
132 PRK00106 hypothetical protein; 51.1 4.4E+02 0.0096 30.4 20.4 8 678-685 244-251 (535)
133 PF04100 Vps53_N: Vps53-like, 51.1 1.1E+02 0.0023 33.1 9.7 81 556-653 18-98 (383)
134 TIGR03017 EpsF chain length de 50.7 3.3E+02 0.0071 28.7 20.8 26 606-631 339-364 (444)
135 PF10186 Atg14: UV radiation r 50.6 2.5E+02 0.0054 27.4 18.2 33 537-569 62-94 (302)
136 PRK12705 hypothetical protein; 50.5 4.4E+02 0.0096 30.2 17.8 13 609-621 161-173 (508)
137 PRK09174 F0F1 ATP synthase sub 50.5 2.2E+02 0.0048 28.4 11.2 62 561-622 96-158 (204)
138 PRK11448 hsdR type I restricti 50.3 1.3E+02 0.0028 37.0 11.2 34 536-569 147-180 (1123)
139 TIGR00634 recN DNA repair prot 48.4 4.3E+02 0.0094 29.5 18.8 71 502-572 218-293 (563)
140 TIGR01541 tape_meas_lam_C phag 48.3 3.8E+02 0.0083 28.9 13.3 20 546-565 84-103 (332)
141 PRK11281 hypothetical protein; 48.1 6.5E+02 0.014 31.5 19.1 31 611-641 277-307 (1113)
142 PF13514 AAA_27: AAA domain 48.0 5.9E+02 0.013 30.9 18.1 18 505-522 783-800 (1111)
143 PF06009 Laminin_II: Laminin D 47.7 4.9 0.00011 37.2 -0.6 73 453-536 48-121 (138)
144 PRK13453 F0F1 ATP synthase sub 47.5 2.6E+02 0.0057 26.7 11.1 100 545-649 41-145 (173)
145 COG3064 TolA Membrane protein 47.5 1.7E+02 0.0037 32.5 10.5 15 544-558 100-114 (387)
146 PF01496 V_ATPase_I: V-type AT 47.4 55 0.0012 37.5 7.3 142 500-658 147-311 (759)
147 KOG1144 Translation initiation 47.0 2.2E+02 0.0048 34.9 12.0 16 540-555 216-231 (1064)
148 PRK03918 chromosome segregatio 46.8 5E+02 0.011 29.8 23.5 35 449-483 154-188 (880)
149 PF04949 Transcrip_act: Transc 46.8 66 0.0014 32.2 6.7 60 478-545 81-140 (159)
150 PF09755 DUF2046: Uncharacteri 46.7 4.3E+02 0.0092 28.9 24.9 87 540-629 108-202 (310)
151 KOG4674 Uncharacterized conser 46.2 8.6E+02 0.019 32.3 22.2 117 461-577 1171-1296(1822)
152 PF15254 CCDC14: Coiled-coil d 45.7 6.6E+02 0.014 30.9 15.7 102 527-652 390-506 (861)
153 TIGR03321 alt_F1F0_F0_B altern 45.7 3.2E+02 0.007 27.5 11.6 18 552-569 68-85 (246)
154 PF05010 TACC: Transforming ac 45.4 3.5E+02 0.0077 27.6 22.6 103 500-623 91-193 (207)
155 COG4372 Uncharacterized protei 45.0 5.3E+02 0.012 29.6 21.2 22 451-472 72-93 (499)
156 PF04871 Uso1_p115_C: Uso1 / p 45.0 2.8E+02 0.006 26.3 13.1 109 506-635 5-114 (136)
157 PRK10361 DNA recombination pro 45.0 5.3E+02 0.011 29.5 14.3 37 536-572 79-115 (475)
158 PF05701 WEMBL: Weak chloropla 44.3 5.1E+02 0.011 29.1 20.9 28 631-658 454-481 (522)
159 TIGR03017 EpsF chain length de 44.1 4.1E+02 0.0089 28.0 18.1 16 541-556 257-272 (444)
160 PF00769 ERM: Ezrin/radixin/mo 44.0 3.7E+02 0.0081 27.5 15.9 70 485-562 37-106 (246)
161 KOG1853 LIS1-interacting prote 43.9 1.5E+02 0.0032 32.2 9.2 77 452-543 93-169 (333)
162 PRK08476 F0F1 ATP synthase sub 43.6 2E+02 0.0042 26.9 9.1 21 629-649 114-134 (141)
163 TIGR00414 serS seryl-tRNA synt 42.8 1.1E+02 0.0024 33.2 8.4 30 534-563 33-62 (418)
164 PF02841 GBP_C: Guanylate-bind 42.6 4E+02 0.0086 27.4 13.3 8 570-577 211-218 (297)
165 PRK06568 F0F1 ATP synthase sub 42.5 1.9E+02 0.0042 28.2 9.1 19 601-619 88-106 (154)
166 PF05384 DegS: Sensor protein 42.3 3.5E+02 0.0076 26.7 13.7 119 455-584 4-126 (159)
167 COG1777 Predicted transcriptio 42.1 2.7E+02 0.0058 29.2 10.5 88 538-632 118-205 (217)
168 PRK13428 F0F1 ATP synthase sub 42.1 2.7E+02 0.0058 30.8 11.1 42 597-643 81-122 (445)
169 TIGR03007 pepcterm_ChnLen poly 41.9 4.8E+02 0.01 28.1 20.7 66 562-631 309-377 (498)
170 TIGR01144 ATP_synt_b ATP synth 40.9 2.8E+02 0.0061 25.2 11.1 47 597-648 75-121 (147)
171 KOG0977 Nuclear envelope prote 40.8 6.5E+02 0.014 29.4 17.0 48 490-540 188-235 (546)
172 PF10146 zf-C4H2: Zinc finger- 40.6 3.5E+02 0.0075 28.0 11.0 81 542-642 36-117 (230)
173 TIGR01843 type_I_hlyD type I s 40.4 4.2E+02 0.0091 27.1 18.4 35 529-563 187-221 (423)
174 PF08317 Spc7: Spc7 kinetochor 40.2 4.6E+02 0.01 27.5 16.9 19 640-658 276-294 (325)
175 PRK02107 glutamate--cysteine l 39.6 2E+02 0.0043 33.0 10.0 118 512-629 377-516 (523)
176 PF03962 Mnd1: Mnd1 family; I 39.5 3.3E+02 0.0071 27.0 10.3 84 488-576 65-152 (188)
177 PRK04863 mukB cell division pr 39.3 9.7E+02 0.021 31.0 22.3 17 446-462 272-288 (1486)
178 PF06320 GCN5L1: GCN5-like pro 39.3 2.4E+02 0.0052 26.4 8.9 63 504-569 23-85 (121)
179 PF05837 CENP-H: Centromere pr 39.1 3E+02 0.0064 25.0 10.5 36 536-571 8-43 (106)
180 PF11471 Sugarporin_N: Maltopo 39.1 52 0.0011 27.8 4.1 28 567-594 29-56 (60)
181 PF05227 CHASE3: CHASE3 domain 38.7 2.6E+02 0.0055 24.1 10.1 68 556-624 67-134 (138)
182 PF08614 ATG16: Autophagy prot 38.7 3.8E+02 0.0082 26.1 11.3 117 504-631 65-184 (194)
183 COG4585 Signal transduction hi 38.6 2.9E+02 0.0063 28.3 10.2 58 552-613 169-227 (365)
184 PHA03332 membrane glycoprotein 38.5 6E+02 0.013 32.3 13.9 96 496-602 867-965 (1328)
185 PF00769 ERM: Ezrin/radixin/mo 38.4 4.6E+02 0.0099 26.9 13.4 34 563-596 75-108 (246)
186 PF15619 Lebercilin: Ciliary p 38.2 4.3E+02 0.0093 26.5 13.2 33 625-658 157-189 (194)
187 KOG4674 Uncharacterized conser 38.2 1.1E+03 0.024 31.4 23.6 189 451-656 1244-1452(1822)
188 COG0419 SbcC ATPase involved i 38.1 7.5E+02 0.016 29.3 21.8 19 232-250 27-45 (908)
189 KOG0963 Transcription factor/C 37.7 3E+02 0.0065 32.6 11.1 59 528-596 300-358 (629)
190 PF00430 ATP-synt_B: ATP synth 37.6 1.6E+02 0.0036 25.7 7.2 21 599-619 81-101 (132)
191 PF09789 DUF2353: Uncharacteri 37.4 5.8E+02 0.013 27.9 12.9 104 464-571 126-229 (319)
192 PF05667 DUF812: Protein of un 36.9 7.4E+02 0.016 28.9 19.7 21 598-618 501-521 (594)
193 COG1579 Zn-ribbon protein, pos 36.2 5.4E+02 0.012 27.1 17.4 15 632-646 189-203 (239)
194 COG3879 Uncharacterized protei 35.8 3.5E+02 0.0075 28.8 10.3 39 522-560 41-79 (247)
195 PRK13455 F0F1 ATP synthase sub 35.7 4.1E+02 0.0088 25.5 10.7 66 558-623 53-118 (184)
196 PRK06231 F0F1 ATP synthase sub 35.7 4.6E+02 0.0099 26.1 13.9 10 511-520 84-93 (205)
197 TIGR02132 phaR_Bmeg polyhydrox 35.0 2.4E+02 0.0053 29.0 8.8 66 534-612 110-182 (189)
198 PF05278 PEARLI-4: Arabidopsis 34.9 6.1E+02 0.013 27.3 15.0 29 536-564 131-161 (269)
199 TIGR00831 a_cpa1 Na+/H+ antipo 34.8 2.8E+02 0.006 30.9 10.0 18 560-577 447-464 (525)
200 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.6 3.7E+02 0.0081 24.8 15.2 27 503-529 25-51 (132)
201 KOG0827 Predicted E3 ubiquitin 34.4 2.9E+02 0.0064 31.5 10.0 109 541-655 86-212 (465)
202 TIGR01843 type_I_hlyD type I s 34.4 5.2E+02 0.011 26.4 17.1 19 638-656 251-269 (423)
203 KOG2002 TPR-containing nuclear 34.0 1.1E+03 0.023 29.8 15.0 49 502-552 776-824 (1018)
204 PRK03963 V-type ATP synthase s 33.8 4.3E+02 0.0093 25.2 11.8 22 592-613 71-92 (198)
205 TIGR00634 recN DNA repair prot 33.7 7.2E+02 0.016 27.9 17.1 95 538-634 301-398 (563)
206 KOG0933 Structural maintenance 33.3 1.1E+03 0.024 29.9 20.0 207 445-658 733-976 (1174)
207 KOG1937 Uncharacterized conser 33.1 8.5E+02 0.018 28.4 18.4 83 536-619 323-420 (521)
208 PF14235 DUF4337: Domain of un 32.9 2.4E+02 0.0052 27.5 8.1 41 597-637 75-115 (157)
209 PRK09039 hypothetical protein; 32.8 6.5E+02 0.014 27.0 22.3 23 542-564 113-135 (343)
210 PF05103 DivIVA: DivIVA protei 32.5 7.6 0.00016 34.2 -1.8 38 536-577 37-74 (131)
211 KOG3443 Uncharacterized conser 31.4 1.6E+02 0.0035 30.1 6.8 61 502-573 31-91 (184)
212 PF05262 Borrelia_P83: Borreli 31.4 4.5E+02 0.0099 30.1 11.0 18 638-655 326-343 (489)
213 TIGR03007 pepcterm_ChnLen poly 31.3 7E+02 0.015 26.9 15.5 33 534-566 200-232 (498)
214 PF02403 Seryl_tRNA_N: Seryl-t 30.9 3.6E+02 0.0078 23.5 9.0 35 532-566 30-64 (108)
215 PRK14011 prefoldin subunit alp 30.7 2E+02 0.0044 27.8 7.2 51 451-501 89-140 (144)
216 PLN02939 transferase, transfer 30.6 1.2E+03 0.025 29.3 22.2 39 509-548 243-281 (977)
217 PF04111 APG6: Autophagy prote 30.6 6.8E+02 0.015 26.6 13.5 31 537-567 42-72 (314)
218 KOG3915 Transcription regulato 30.3 3.4E+02 0.0073 31.7 9.8 41 556-597 535-575 (641)
219 PF06102 DUF947: Domain of unk 30.3 3E+02 0.0066 26.9 8.4 17 535-551 60-76 (168)
220 KOG1103 Predicted coiled-coil 30.0 8.8E+02 0.019 27.7 20.6 66 452-517 88-153 (561)
221 PRK06228 F0F1 ATP synthase sub 29.9 1.4E+02 0.0031 28.1 5.9 25 560-584 88-112 (131)
222 PF14712 Snapin_Pallidin: Snap 29.9 1.8E+02 0.004 24.7 6.1 67 591-658 21-89 (92)
223 KOG2072 Translation initiation 29.8 1.2E+03 0.026 29.2 14.6 20 592-611 618-637 (988)
224 cd07615 BAR_Endophilin_A3 The 29.8 1.8E+02 0.0039 30.0 7.0 65 508-575 156-223 (223)
225 PF10226 DUF2216: Uncharacteri 29.3 4.4E+02 0.0095 27.4 9.5 93 565-660 18-128 (195)
226 KOG0796 Spliceosome subunit [R 29.1 3.1E+02 0.0068 30.1 8.9 27 633-659 204-234 (319)
227 PRK06569 F0F1 ATP synthase sub 29.1 5.7E+02 0.012 25.3 11.8 20 600-619 101-120 (155)
228 PF12325 TMF_TATA_bd: TATA ele 28.7 5.1E+02 0.011 24.5 10.7 93 457-552 16-110 (120)
229 PRK13922 rod shape-determining 28.5 6.2E+02 0.014 25.5 11.0 54 567-632 60-113 (276)
230 COG4913 Uncharacterized protei 28.3 1.2E+03 0.027 28.9 15.4 114 447-587 236-362 (1104)
231 COG4717 Uncharacterized conser 28.2 1E+03 0.022 29.8 13.5 41 453-493 291-331 (984)
232 PF08641 Mis14: Kinetochore pr 28.2 2.9E+02 0.0063 25.9 7.6 48 542-589 37-84 (139)
233 KOG1144 Translation initiation 28.1 3.2E+02 0.0069 33.7 9.4 16 483-498 160-175 (1064)
234 TIGR00414 serS seryl-tRNA synt 27.7 4.4E+02 0.0095 28.9 9.9 80 556-635 30-110 (418)
235 PF09787 Golgin_A5: Golgin sub 27.7 9E+02 0.02 27.1 18.3 66 539-609 195-260 (511)
236 COG1579 Zn-ribbon protein, pos 27.6 7.4E+02 0.016 26.1 19.0 23 564-586 90-112 (239)
237 PRK04778 septation ring format 27.5 9.4E+02 0.02 27.2 22.9 19 506-524 310-328 (569)
238 cd03405 Band_7_HflC Band_7_Hfl 27.4 4.1E+02 0.009 25.7 8.7 12 563-574 153-164 (242)
239 PF04849 HAP1_N: HAP1 N-termin 27.3 8.5E+02 0.018 26.6 17.8 114 445-565 155-268 (306)
240 KOG2273 Membrane coat complex 27.1 8.6E+02 0.019 26.6 15.9 18 636-653 420-437 (503)
241 KOG4552 Vitamin-D-receptor int 27.1 8E+02 0.017 26.3 13.7 59 461-521 5-69 (272)
242 PF13767 DUF4168: Domain of un 26.9 3.6E+02 0.0078 22.9 7.3 59 556-626 11-76 (78)
243 KOG3612 PHD Zn-finger protein 26.7 5.8E+02 0.012 30.2 10.9 74 498-571 422-501 (588)
244 KOG0980 Actin-binding protein 26.6 1.4E+03 0.029 28.8 20.1 80 480-562 447-532 (980)
245 PF09731 Mitofilin: Mitochondr 26.6 9.2E+02 0.02 26.8 17.7 14 560-573 319-332 (582)
246 KOG1900 Nuclear pore complex, 26.6 4.2E+02 0.0092 33.8 10.4 139 487-639 699-877 (1311)
247 KOG2273 Membrane coat complex 26.5 8.8E+02 0.019 26.6 19.4 16 277-292 147-162 (503)
248 PLN03229 acetyl-coenzyme A car 25.4 5.1E+02 0.011 31.4 10.5 98 501-598 431-550 (762)
249 PF05600 DUF773: Protein of un 25.1 8.3E+02 0.018 27.8 11.7 71 562-637 435-505 (507)
250 TIGR00570 cdk7 CDK-activating 25.1 8E+02 0.017 26.8 11.1 18 553-570 94-111 (309)
251 TIGR01434 glu_cys_ligase gluta 25.0 5.6E+02 0.012 29.5 10.4 115 514-628 375-509 (512)
252 KOG1363 Predicted regulator of 24.9 3.4E+02 0.0075 30.7 8.7 18 643-660 377-394 (460)
253 COG4942 Membrane-bound metallo 24.8 1.1E+03 0.023 27.0 22.2 180 452-646 47-244 (420)
254 PF08317 Spc7: Spc7 kinetochor 24.8 8.3E+02 0.018 25.7 16.0 22 456-477 155-176 (325)
255 COG2900 SlyX Uncharacterized p 24.6 3.7E+02 0.0081 24.2 7.1 47 564-614 2-48 (72)
256 PF03474 DMA: DMRTA motif; In 24.3 81 0.0018 25.3 2.8 33 9-41 7-39 (39)
257 KOG0243 Kinesin-like protein [ 24.3 1.5E+03 0.033 28.6 16.3 28 503-530 408-436 (1041)
258 PF12999 PRKCSH-like: Glucosid 24.2 2.4E+02 0.0052 28.5 6.6 26 561-586 151-176 (176)
259 COG2517 Predicted RNA-binding 24.2 2E+02 0.0043 30.0 6.1 18 553-570 33-50 (219)
260 PF03961 DUF342: Protein of un 24.0 4.2E+02 0.0092 28.8 8.9 26 542-567 331-356 (451)
261 PF09730 BicD: Microtubule-ass 24.0 1.3E+03 0.028 27.9 13.3 108 536-658 39-146 (717)
262 PF11932 DUF3450: Protein of u 24.0 7.5E+02 0.016 24.8 12.1 16 647-662 109-124 (251)
263 PRK13169 DNA replication intia 23.9 3.3E+02 0.0071 25.6 7.0 39 503-552 19-57 (110)
264 PF06156 DUF972: Protein of un 23.9 3E+02 0.0065 25.5 6.7 39 503-552 19-57 (107)
265 PRK07248 hypothetical protein; 23.9 2.5E+02 0.0054 24.1 5.9 18 600-617 68-85 (87)
266 KOG2751 Beclin-like protein [S 23.9 7.2E+02 0.016 28.6 10.7 116 521-649 131-255 (447)
267 KOG2910 Uncharacterized conser 23.7 7E+02 0.015 26.2 9.8 87 473-591 79-165 (209)
268 PF13779 DUF4175: Domain of un 23.5 1.3E+03 0.029 28.0 13.5 126 481-613 468-613 (820)
269 cd03403 Band_7_stomatin_like B 23.5 6.4E+02 0.014 23.9 9.7 11 562-572 144-154 (215)
270 PF07246 Phlebovirus_NSM: Phle 23.5 2.1E+02 0.0045 30.6 6.3 16 640-655 223-238 (264)
271 PF03179 V-ATPase_G: Vacuolar 23.2 5.2E+02 0.011 22.7 9.3 33 548-580 7-39 (105)
272 PF13514 AAA_27: AAA domain 22.9 1.4E+03 0.031 27.8 19.0 22 607-628 849-870 (1111)
273 PHA02592 52 DNA topisomerase I 22.8 1E+03 0.022 26.8 11.7 54 590-653 385-438 (439)
274 KOG0968 DNA polymerase zeta, c 22.8 14 0.00029 45.7 -2.5 108 112-226 1082-1198(1488)
275 TIGR03517 GldM_gliding gliding 22.8 3.6E+02 0.0077 31.0 8.4 113 453-575 41-175 (523)
276 PRK13590 putative bifunctional 22.7 2.7E+02 0.0059 31.4 7.5 117 489-616 57-192 (591)
277 PF06098 Radial_spoke_3: Radia 22.7 9.8E+02 0.021 25.8 12.7 19 626-644 230-248 (291)
278 PF12329 TMF_DNA_bd: TATA elem 22.7 2.9E+02 0.0062 23.9 6.0 65 593-657 3-71 (74)
279 PF08687 ASD2: Apx/Shroom doma 22.7 9.6E+02 0.021 25.7 15.5 27 610-636 188-214 (264)
280 PF06428 Sec2p: GDP/GTP exchan 22.7 4.4E+02 0.0096 24.3 7.5 26 619-644 51-76 (100)
281 PF09032 Siah-Interact_N: Siah 22.7 1E+02 0.0022 27.5 3.4 39 506-553 10-48 (79)
282 KOG2072 Translation initiation 22.6 1.6E+03 0.034 28.2 19.5 74 501-574 692-783 (988)
283 cd03407 Band_7_4 A subgroup of 22.4 6.2E+02 0.013 25.4 9.2 26 522-547 98-124 (262)
284 KOG1923 Rac1 GTPase effector F 22.2 79 0.0017 38.0 3.3 146 478-644 643-803 (830)
285 KOG0018 Structural maintenance 22.2 1.7E+03 0.037 28.4 18.9 141 500-658 297-455 (1141)
286 PRK13453 F0F1 ATP synthase sub 22.1 7.1E+02 0.015 23.9 13.1 23 548-570 77-99 (173)
287 PRK13428 F0F1 ATP synthase sub 22.0 5.1E+02 0.011 28.7 9.1 22 557-578 47-68 (445)
288 PF04880 NUDE_C: NUDE protein, 22.0 51 0.0011 32.7 1.6 22 508-529 2-23 (166)
289 PRK11085 magnesium/nickel/coba 21.9 3.9E+02 0.0084 28.5 8.0 47 612-658 176-232 (316)
290 PF13815 Dzip-like_N: Iguana/D 21.9 5.8E+02 0.012 23.3 8.1 57 545-612 61-118 (118)
291 PRK12595 bifunctional 3-deoxy- 21.7 2.2E+02 0.0048 30.8 6.3 24 601-624 72-95 (360)
292 KOG0962 DNA repair protein RAD 21.7 1.8E+03 0.04 28.6 22.7 185 452-657 887-1079(1294)
293 cd03401 Band_7_prohibitin Band 21.6 5E+02 0.011 24.2 7.9 68 523-594 108-190 (196)
294 COG4372 Uncharacterized protei 21.4 1.3E+03 0.028 26.7 20.4 32 531-562 137-168 (499)
295 KOG1962 B-cell receptor-associ 21.4 9.5E+02 0.021 25.1 16.9 33 469-501 56-97 (216)
296 PF11221 Med21: Subunit 21 of 21.2 2.2E+02 0.0048 26.8 5.5 39 570-608 104-142 (144)
297 KOG0804 Cytoplasmic Zn-finger 21.2 1.2E+03 0.026 27.2 11.9 94 509-604 354-448 (493)
298 PF05266 DUF724: Protein of un 20.7 8.7E+02 0.019 24.4 11.6 60 596-658 125-184 (190)
299 PF11464 Rbsn: Rabenosyn Rab b 20.6 2.3E+02 0.005 23.1 4.6 38 505-548 2-39 (42)
300 PF07946 DUF1682: Protein of u 20.5 5.7E+02 0.012 27.0 8.8 6 535-540 251-256 (321)
301 PF07464 ApoLp-III: Apolipopho 20.4 2.1E+02 0.0045 28.1 5.2 31 591-621 88-118 (155)
302 PRK10869 recombination and rep 20.4 1.3E+03 0.028 26.3 18.2 95 539-635 297-394 (553)
303 COG1842 PspA Phage shock prote 20.3 9.6E+02 0.021 24.7 14.3 96 535-630 28-124 (225)
304 PRK10865 protein disaggregatio 20.3 1.5E+03 0.033 27.1 14.1 13 523-535 379-391 (857)
305 PF10602 RPN7: 26S proteasome 20.3 6.7E+02 0.014 24.2 8.6 90 560-655 4-95 (177)
306 PF07111 HCR: Alpha helical co 20.1 1.6E+03 0.035 27.4 19.5 52 527-578 459-511 (739)
307 TIGR02231 conserved hypothetic 20.1 6.5E+02 0.014 27.8 9.5 16 452-467 73-88 (525)
No 1
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=96.45 E-value=0.0042 Score=46.77 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=33.5
Q ss_pred HHHHHHHhhcccchHHHHHHHHhhhccchhhhhhHhhh
Q 004517 5 AVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLT 42 (747)
Q Consensus 5 ~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ 42 (747)
+--+.|++|||+++...++++-.+|..|+|+|+..+|.
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34578999999999999999999999999999988774
No 2
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=96.34 E-value=0.0052 Score=46.26 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcccchHHHHHHHHhhhccchhhhhhHhhh
Q 004517 4 NAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLT 42 (747)
Q Consensus 4 k~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ 42 (747)
.+....|++|||++|...++.+-..|..|++.|+..+|.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 356788999999999999999999999999999988774
No 3
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.06 E-value=0.76 Score=55.82 Aligned_cols=188 Identities=20% Similarity=0.256 Sum_probs=101.3
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHhHHHHHHHHHHHHHh-ccccc
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGG---LDIFVKMDELKQMLAHAKEA-NDMHA 526 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG---~DILaKVEELKeML~~AKEA-NDmhA 526 (747)
+.+.|...-..|++.-+.+...+|.|.+-+++.+.+.-+|+.|.+.|..-= .+.|.||++ -+.-|.+. |. |
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~---~t~~aE~~~~~--a 1617 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE---ETAAAEKLATS--A 1617 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHH--H
Confidence 346666666777777788889999999999999988888888888876533 334444443 22222111 22 2
Q ss_pred hhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHH
Q 004517 527 GEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEM-------RETLEARLAAAEDMRKEAEEEKFEKE----ESARA 595 (747)
Q Consensus 527 GEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEM-------r~TLEaRLAaAeeEr~AAEeeKieKE----esArk 595 (747)
++-.+| |.+-..+|+....+.|.+-..+....+-. ++.|+ -|..+-+....--+.|.+.. +.|.+
T Consensus 1618 ~q~~~e---L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~~r~~g~~~ar~rAe~ 1693 (1758)
T KOG0994|consen 1618 TQQLGE---LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLLEKRMEGSQAARERAEQ 1693 (1758)
T ss_pred HHHHHH---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 222222 55666666666666666655554433322 11121 11111111111111111211 22344
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHH
Q 004517 596 SLAEQEVIMEKVVQESKLL---QQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVR 650 (747)
Q Consensus 596 ~L~EQEalM~kVvEESrkL---qqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~ 650 (747)
++.|-+.|+......-++| +-+-++| ...|+|+-.+++-|-++|-.+-.||.
T Consensus 1694 L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~---~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQANEKLDRLKDLELEYLRN---EQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5555555555544333333 2223333 24688888888888888888877764
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.93 E-value=1.4 Score=52.86 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhcccc---chhhhccchhHHHHHHHHH
Q 004517 468 NLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMH---AGEIYGERAILATEARELQ 544 (747)
Q Consensus 468 ~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmh---AGEVyGEKAILaTEArELQ 544 (747)
.|+..+..|..+.++++-.+..-+.-..+....|.+ ..+++|..-+......-++. -..+-.++.-+..+.+.||
T Consensus 786 sL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~--~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq 863 (1311)
T TIGR00606 786 VCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555554444444444444443 14444544444333332221 1224556667778888888
Q ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 545 NRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEE 585 (747)
Q Consensus 545 SRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEee 585 (747)
.++..+.+++.+.-..+. .|..|+.+|..-..+......+
T Consensus 864 ~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 864 SKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777776 7888888887776666555443
No 5
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.42 E-value=1.9 Score=52.71 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HhhcCcccccccchhhhhhhhHHHHHHHhccCccc
Q 004517 607 VVQESKLLQQQAEENSKLREF------LMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPL 662 (747)
Q Consensus 607 VvEESrkLqqEAEENsKLREF------LMDRG~IVDsLQGEISVIceDV~~LKervD~rlpl 662 (747)
+.+|.++|-.+ .|.||..+ +.+.-+-++.++-|+..+-..|+.+-.-.-+++.+
T Consensus 1694 L~~eA~~Ll~~--a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv~~ 1753 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQ--ANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINERVLY 1753 (1758)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Confidence 33344444333 35565543 34555677888888888888888777666666543
No 6
>PRK11637 AmiB activator; Provisional
Probab=94.91 E-value=6.2 Score=41.84 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=20.6
Q ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 545 NRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRK 580 (747)
Q Consensus 545 SRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~ 580 (747)
..|..|+..|.+.+.-+..-+..|+.-.+..++.+.
T Consensus 159 ~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~ 194 (428)
T PRK11637 159 AYFGYLNQARQETIAELKQTREELAAQKAELEEKQS 194 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777766666666666654444443333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.88 E-value=8.1 Score=43.93 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=13.9
Q ss_pred cccccCCCCcccceeeh-hcc
Q 004517 234 LSAHANGLGATDIDISI-FGI 253 (747)
Q Consensus 234 ls~~~~~~g~t~i~~~~-f~i 253 (747)
+---.||+|-|.|.+.| |.+
T Consensus 27 ~i~G~NGsGKS~ildAi~~~l 47 (1164)
T TIGR02169 27 VISGPNGSGKSNIGDAILFAL 47 (1164)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 33445899999998866 433
No 8
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=94.66 E-value=2.5 Score=43.31 Aligned_cols=113 Identities=18% Similarity=0.265 Sum_probs=74.7
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcchhHHHhHHHHHHHHHHHHHhc
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAA--------AVRGGLDIFVKMDELKQMLAHAKEAN 522 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~E--------As~aG~DILaKVEELKeML~~AKEAN 522 (747)
+++.|...+.+...-+..--..+..+..|+.+ |-.|-..-+++.- +..+...+..++.+++.-|..|..++
T Consensus 71 g~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~-E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD 149 (342)
T cd08915 71 GLDNIEQSFKELSKLRQNVEELLQECEELLEE-EAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSD 149 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35667777777776666666666777777743 3333333333331 45666789999999999999999998
Q ss_pred cccchhhhc----------------------------cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 004517 523 DMHAGEIYG----------------------------ERAILATEARELQNRLLSLSEERDKSLAVLDEM 564 (747)
Q Consensus 523 DmhAGEVyG----------------------------EKAILaTEArELQSRL~~LSeERdkaLaIIDEM 564 (747)
...-.-+-. +-.-.....+.+-..|..|..+|.+.+.-+.+.
T Consensus 150 ~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~ 219 (342)
T cd08915 150 NEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIK 219 (342)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544331 112345567778888888888998876666444
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.97 E-value=14 Score=41.86 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=5.8
Q ss_pred hhHHHHHHHHhhhhh
Q 004517 453 DLLEEMIEDAKYNKK 467 (747)
Q Consensus 453 esLE~~IsdaK~nK~ 467 (747)
+.++.-+..++....
T Consensus 687 ~~l~~~l~~~~~~~~ 701 (1179)
T TIGR02168 687 EELEEKIAELEKALA 701 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444443333333
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.66 E-value=13 Score=44.62 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMRE 482 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrE 482 (747)
.++.+..-+..++...+.|..-++.+.+.+.+
T Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (1163)
T COG1196 717 QLEELKRELAALEEELEQLQSRLEELEEELEE 748 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666666666665555
No 11
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=93.45 E-value=8.6 Score=37.92 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchhHHHhHHHHHHHHHHHHHhcccc
Q 004517 452 IDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAK------AAAVRGGLDIFVKMDELKQMLAHAKEANDMH 525 (747)
Q Consensus 452 IesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK------~EAs~aG~DILaKVEELKeML~~AKEANDmh 525 (747)
++.|.+++.+........-+.+..+.+++.+-+...++-+.-- ..+......+..+++.++..|..|++.|...
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7889999999999999988999999888877665555544432 2355667799999999999999999988764
Q ss_pred chhhhccc----------------------------hhHHHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 004517 526 AGEIYGER----------------------------AILATEARELQNRLLSLSEERDKSLAVLDE 563 (747)
Q Consensus 526 AGEVyGEK----------------------------AILaTEArELQSRL~~LSeERdkaLaIIDE 563 (747)
-.-+-.=+ .......++|-.+|..|..+|+..+.-|.+
T Consensus 104 ~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 104 RSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221111 123355678888889999999885544443
No 12
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.31 E-value=13 Score=41.97 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004517 604 MEKVVQESKLLQQQAEENSKLREFLMDR 631 (747)
Q Consensus 604 M~kVvEESrkLqqEAEENsKLREFLMDR 631 (747)
+.....+-+.|+.|++-+.++-+.|+.|
T Consensus 371 ~~~~~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 371 AGEQQVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667789999999999988887765
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.77 E-value=22 Score=40.71 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=18.5
Q ss_pred ccchhhhhhhhHHHHHHHhccCcc
Q 004517 638 LQGEISVICQDVRLLKEKFDERVP 661 (747)
Q Consensus 638 LQGEISVIceDV~~LKervD~rlp 661 (747)
|+-|---+.++|+.|..|+|..-.
T Consensus 436 l~~EkQeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 436 LQEEKQELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455666788999999999998643
No 14
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=92.51 E-value=6.9 Score=40.78 Aligned_cols=109 Identities=13% Similarity=0.233 Sum_probs=77.2
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhcchhHHHhHHHHHHHHHHHHHhccc
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEA------KAAAVRGGLDIFVKMDELKQMLAHAKEANDM 524 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqA------K~EAs~aG~DILaKVEELKeML~~AKEANDm 524 (747)
+++.|..++.+...-+..--..++.+..|+.+=+-..+..+.- ...+......+..++.+++..|..|..++..
T Consensus 70 g~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~ 149 (339)
T cd09235 70 GIQTIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQADKI 149 (339)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3789999999999999888888888888887654444443332 1244566778999999999999999998765
Q ss_pred cchh---------hh--ccchh-----------------HHHHHHHHHHHHhhhHHHhhhHHH
Q 004517 525 HAGE---------IY--GERAI-----------------LATEARELQNRLLSLSEERDKSLA 559 (747)
Q Consensus 525 hAGE---------Vy--GEKAI-----------------LaTEArELQSRL~~LSeERdkaLa 559 (747)
...- ++ ++..+ ...+.+.+-..|..|..||...+.
T Consensus 150 v~~k~~~~~~~l~lLs~~~~~l~~~lPss~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~ 212 (339)
T cd09235 150 VREKYESHREGIELLSKPEEELANAIPSASPAKTLQGSEAVQELRQLMEQVETIKAEREVIES 212 (339)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 22 21111 245668888888888999988643
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.49 E-value=25 Score=42.55 Aligned_cols=45 Identities=24% Similarity=0.427 Sum_probs=24.7
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Q 004517 542 ELQNRLLSLSEERDKSLAVLDEMRE----------------TLEARLAAAEDMRKEAEEEK 586 (747)
Q Consensus 542 ELQSRL~~LSeERdkaLaIIDEMr~----------------TLEaRLAaAeeEr~AAEeeK 586 (747)
+++.++..+++++.....-+.+++. .++.|+..|++...++.++.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~ 492 (1201)
T PF12128_consen 432 QSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAV 492 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666665555555543 34556666655555554443
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.23 E-value=19 Score=42.44 Aligned_cols=206 Identities=20% Similarity=0.244 Sum_probs=133.8
Q ss_pred ccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHH-hccccch
Q 004517 449 ICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKE-ANDMHAG 527 (747)
Q Consensus 449 ~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKE-ANDmhAG 527 (747)
-=||+-|.+-+......+..|-+-+++++.-+.+.+-+=.++......+-.--.-.-..+++|+.|+..... -|..+.-
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999999888777776666666655555666788999999987763 3666555
Q ss_pred -----hhhccchhHHHHHHHHHHHHhhhHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004517 528 -----EIYGERAILATEARELQNRLLSLSEER---DKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAE 599 (747)
Q Consensus 528 -----EVyGEKAILaTEArELQSRL~~LSeER---dkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~E 599 (747)
+.+.+|. ....++..||.. .... +.++.-|+|-....+.=+-.-++.+.-+++++.+.=+.-++-+++
T Consensus 401 ie~Lee~l~ekd---~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~ 476 (775)
T PF10174_consen 401 IENLEEQLREKD---RQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKE 476 (775)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555553 334444455552 2111 233344444443333333333444555555555444444444444
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 600 QEVIMEKV----VQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 600 QEalM~kV----vEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
...-+... .+..--|..--++.++|.--......-++.|+.++--+++++..|+.+++.
T Consensus 477 lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 477 LKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 43333322 222233444457788888888888888899999999999999999988876
No 17
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=91.44 E-value=20 Score=37.36 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=78.2
Q ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchhHHHhHHHHHHHHHHHHHhccccc
Q 004517 450 CRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAK---AAAVRGGLDIFVKMDELKQMLAHAKEANDMHA 526 (747)
Q Consensus 450 ~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK---~EAs~aG~DILaKVEELKeML~~AKEANDmhA 526 (747)
=+|+.|...+.+...-+...-..++.+..|+.+=+..++..+..- ..+......+-.++.+++.-|..|..+|...-
T Consensus 72 ~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~ 151 (337)
T cd09234 72 DTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTELH 151 (337)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 457888889999998888888888888888877666555554422 23333577889999999999999999887654
Q ss_pred hhhhccc---hhH-------------------------HHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 004517 527 GEIYGER---AIL-------------------------ATEARELQNRLLSLSEERDKSLAVLDE 563 (747)
Q Consensus 527 GEVyGEK---AIL-------------------------aTEArELQSRL~~LSeERdkaLaIIDE 563 (747)
.-+-.=+ .|| ....++|-++|..|..+|...+.-+.+
T Consensus 152 ~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~ 216 (337)
T cd09234 152 KAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRD 216 (337)
T ss_pred HHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333211 222 445666667777777777766555533
No 18
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.29 E-value=35 Score=42.47 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=69.2
Q ss_pred hccchhHHHHHHHHHHHHhhhHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHH---HH
Q 004517 530 YGERAILATEARELQNRLLSLSEERDKSLAV---LDEMRETLEARLAAAEDMRKEAEEEKFE----------KEE---SA 593 (747)
Q Consensus 530 yGEKAILaTEArELQSRL~~LSeERdkaLaI---IDEMr~TLEaRLAaAeeEr~AAEeeKie----------KEe---sA 593 (747)
-.++--|-++.+.|+.+|..+....+++... +...|.+|+.+..-+..+.+.+.+-..- .++ -.
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~ 586 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDL 586 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccH
Confidence 3456678888888998888887777777443 4455667776655555443322221111 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHH
Q 004517 594 RASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEK 655 (747)
Q Consensus 594 rk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKer 655 (747)
+..+...+..+-+.-++-++|+.+++.+ |+..++--.|+-.|+++|+..-.++..++..
T Consensus 587 ~d~l~~le~~k~~ls~~~~~~~~~~e~~---~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 587 EDKLSLLEESKSKLSKENKKLRSELEKE---RRQRTEISEIIAELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 2333333444444444445555555543 3334444456778888888888877665543
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.06 E-value=24 Score=37.68 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 004517 532 ERAILATEARELQNRLLSLSEERDKSLAVLD 562 (747)
Q Consensus 532 EKAILaTEArELQSRL~~LSeERdkaLaIID 562 (747)
+-..|..+..+|+++|..|.+.+...-..++
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~ 330 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMD 330 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777666666654444333
No 20
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.76 E-value=50 Score=40.76 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQ 615 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLq 615 (747)
...++.+++..+.+++.+....-..+..+.++|++||+..+.+...+.++.-..++....+-.+...+.+++.+.-..+.
T Consensus 894 ~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~ 973 (1353)
T TIGR02680 894 AAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLD 973 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666777888888888777777777766666665555666666666644334444
Q ss_pred HHHHHH
Q 004517 616 QQAEEN 621 (747)
Q Consensus 616 qEAEEN 621 (747)
.+++.+
T Consensus 974 ~~~~~~ 979 (1353)
T TIGR02680 974 ERAEAR 979 (1353)
T ss_pred HHHHHH
Confidence 444433
No 21
>PRK11281 hypothetical protein; Provisional
Probab=90.45 E-value=17 Score=44.23 Aligned_cols=197 Identities=15% Similarity=0.205 Sum_probs=111.9
Q ss_pred cchhhHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhcc
Q 004517 450 CRIDLLEEMIEDAKYN------KKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEAND 523 (747)
Q Consensus 450 ~sIesLE~~IsdaK~n------K~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEAND 523 (747)
.+-+.|..-|+.+++. ++.+...++...+.+++.+.++++++.-++.+..+-..+ .+.++=++.-|..++
T Consensus 36 p~~~~iq~~l~~~~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l----~~a~~~Le~Lk~~~~ 111 (1113)
T PRK11281 36 PTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKL----RQAQAELEALKDDND 111 (1113)
T ss_pred CCHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHhhcccc
Confidence 3344455555555443 455788899999999999999988888777777766553 333333444344444
Q ss_pred ccchhhhccchhHHHHHHHHHHHHhhhHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-----
Q 004517 524 MHAGEIYGERAILATEARELQNRLLSLSEE---RDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKE--ESA----- 593 (747)
Q Consensus 524 mhAGEVyGEKAILaTEArELQSRL~~LSeE---RdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKE--esA----- 593 (747)
..+-+-| .+..+ ..|+++|.++.++ ..+.|+-++---.+++.|..+|+....+|.....+=. -.+
T Consensus 112 ~~~~~~~-~~~Sl----~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~ 186 (1113)
T PRK11281 112 EETRETL-STLSL----RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGG 186 (1113)
T ss_pred ccccccc-cccCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4443445 22222 3366666665553 2333444444444556666666655444433322211 100
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 594 ----RASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 594 ----rk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
......-++-+.....+-..++||...|..|.+++--| .|-+.-++.-+-+-|..|++....
T Consensus 187 ~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q---~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 187 KALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQ---RDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111112233344445788999999999999998766 366666777777777777665544
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.35 E-value=48 Score=39.91 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=19.8
Q ss_pred CceeeeecccccccccccCCCcccccccccccCCCCccccee
Q 004517 207 NGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDI 248 (747)
Q Consensus 207 ~~~~~~~k~~y~~~~~~~~~~~~~~~tls~~~~~~g~t~i~~ 248 (747)
.|.-|.-. .+-+.|....|-|+-| ||+|=..|.+
T Consensus 9 ~gFKSF~~--~~~i~f~~~~t~IvGP------NGSGKSNI~D 42 (1163)
T COG1196 9 KGFKSFAD--PTEINFSPGFTAIVGP------NGSGKSNIVD 42 (1163)
T ss_pred ECcccCCC--CeeeecCCCCeEEECC------CCCchHHHHH
Confidence 34444433 5566677777766665 6777555544
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=89.77 E-value=42 Score=38.31 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=24.6
Q ss_pred chhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 004517 526 AGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETL 568 (747)
Q Consensus 526 AGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TL 568 (747)
.-+++.+-.=+..+..+|+.++..|.+.|+..-.=|.|+|..+
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i 636 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666556666666666666666666554444444444443
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.55 E-value=16 Score=44.95 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=19.2
Q ss_pred hcCccccccc-----chhhhhhhh---HHHHHHHhccCc
Q 004517 630 DRGRVVDSLQ-----GEISVICQD---VRLLKEKFDERV 660 (747)
Q Consensus 630 DRG~IVDsLQ-----GEISVIceD---V~~LKervD~rl 660 (747)
-||.|.|+|+ |-|-+|+.. .-..-.++|--|
T Consensus 598 s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAI 636 (1293)
T KOG0996|consen 598 SRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAI 636 (1293)
T ss_pred hhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHH
Confidence 3677888888 777777653 333445555533
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=88.93 E-value=48 Score=37.86 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=8.2
Q ss_pred cccccchhhhhhhhHH
Q 004517 635 VDSLQGEISVICQDVR 650 (747)
Q Consensus 635 VDsLQGEISVIceDV~ 650 (747)
+..++.+|.-|-.++.
T Consensus 594 ~~~~~~~i~~~~~~~~ 609 (880)
T PRK02224 594 IRTLLAAIADAEDEIE 609 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555554444444
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.82 E-value=23 Score=39.79 Aligned_cols=82 Identities=28% Similarity=0.246 Sum_probs=46.8
Q ss_pred hhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 502 LDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKE 581 (747)
Q Consensus 502 ~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~A 581 (747)
.+++.+++++.+-+...... ..++-.+..-+..+...++.+|..+.++....=-.+.+=|..|+.++...+++++.
T Consensus 205 ~~~~~~~~~le~el~~l~~~----~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEK----YEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKA 280 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554443322 22233344556666666677777666665555555556677777777777666665
Q ss_pred HHHHHH
Q 004517 582 AEEEKF 587 (747)
Q Consensus 582 AEeeKi 587 (747)
++++..
T Consensus 281 ~~~~l~ 286 (650)
T TIGR03185 281 NRAQLR 286 (650)
T ss_pred HHHHHH
Confidence 554443
No 27
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.46 E-value=57 Score=38.15 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 597 LAEQEVIMEKVVQESKLLQQQAEENSKLREF 627 (747)
Q Consensus 597 L~EQEalM~kVvEESrkLqqEAEENsKLREF 627 (747)
|.+-+.-+..+.++.+++.+.++.-.++.+.
T Consensus 656 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (908)
T COG0419 656 LEELEEKVEELEAEIRRELQRIENEEQLEEK 686 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444555554433333343443333
No 28
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.27 E-value=68 Score=38.84 Aligned_cols=125 Identities=22% Similarity=0.218 Sum_probs=98.4
Q ss_pred cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004517 532 ERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLE-------ARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIM 604 (747)
Q Consensus 532 EKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLE-------aRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM 604 (747)
|-.-+..|.+.|....-.+-.++++..+.++-|+.+-+ .-++.+.....++|..+-.+|+..| |+++..-+
T Consensus 738 el~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~--l~~~q~e~ 815 (970)
T KOG0946|consen 738 ELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTR--LQELQSEL 815 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhH--HHHHHHHH
Confidence 44566778889988888899999999999999998876 2355666777777777767777655 67888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhccCcc
Q 004517 605 EKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVP 661 (747)
Q Consensus 605 ~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~rlp 661 (747)
.+..+++.-+-++..++++..+-+ |.+--.+-+|-.-|-+..+.|++|+...=-
T Consensus 816 ~~~keq~~t~~~~tsa~a~~le~m---~~~~~~la~e~~~ieq~ls~l~~~~k~~~n 869 (970)
T KOG0946|consen 816 TQLKEQIQTLLERTSAAADSLESM---GSTEKNLANELKLIEQKLSNLQEKIKFGNN 869 (970)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHh---hccccchhhHHHHHHHHHHHHHHHhhhhhh
Confidence 888888888888888888776654 666677888888888888889988765443
No 29
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.61 E-value=67 Score=40.17 Aligned_cols=94 Identities=23% Similarity=0.332 Sum_probs=49.0
Q ss_pred hcchhHHHhHHHHHHHHHHHHHhccccchhhh-------------ccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 004517 499 RGGLDIFVKMDELKQMLAHAKEANDMHAGEIY-------------GERAILATEARELQNRLLSLSEERDKSLAVLDEMR 565 (747)
Q Consensus 499 ~aG~DILaKVEELKeML~~AKEANDmhAGEVy-------------GEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr 565 (747)
.++.|.-+++++.+++..|.++-+.+.-.+-= -.+..|..|.++||+-+......|....-++.+++
T Consensus 550 ~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~ 629 (1317)
T KOG0612|consen 550 EAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELK 629 (1317)
T ss_pred HhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566666554322211 12456667777777777777777766665555554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004517 566 E---TLEARLAAAEDMRKEAEEEKFEKEES 592 (747)
Q Consensus 566 ~---TLEaRLAaAeeEr~AAEeeKieKEes 592 (747)
. +|+.++-+-..+..-+++.+.+..+.
T Consensus 630 ~~i~sL~~~~~~~~~~l~k~~el~r~~~e~ 659 (1317)
T KOG0612|consen 630 EEISSLEETLKAGKKELLKVEELKRENQER 659 (1317)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3 34444443333333333333333333
No 30
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.42 E-value=51 Score=40.17 Aligned_cols=40 Identities=28% Similarity=0.206 Sum_probs=25.2
Q ss_pred ccCceeeeecc--cccccccccCCCcccccccccccCCCCcccceeeh
Q 004517 205 ESNGVVSVDKG--QYTDVKFESEHTPIVMPTLSAHANGLGATDIDISI 250 (747)
Q Consensus 205 e~~~~~~~~k~--~y~~~~~~~~~~~~~~~tls~~~~~~g~t~i~~~~ 250 (747)
...|+-|++.| .-+.+.|... .|+--..||+|-|.|+..|
T Consensus 7 ~i~g~rSf~~~~~~~~~I~F~~~------~~~I~G~NGaGKTTil~ai 48 (1311)
T TIGR00606 7 SILGVRSFGIEDKDKQIIDFFSP------LTILVGPNGAGKTTIIECL 48 (1311)
T ss_pred eeeceecCCCccccceeeecccc------eEEEECCCCCCHHHHHHHH
Confidence 45677777531 2345666543 3344455899999998876
No 31
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.40 E-value=44 Score=38.39 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=22.7
Q ss_pred ccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 004517 449 ICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREV 483 (747)
Q Consensus 449 ~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEV 483 (747)
.--++.|.+.|.++......+-..|+.+..-++.+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~ 361 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQL 361 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467777777777777777766666655554444
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.31 E-value=80 Score=37.56 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=63.1
Q ss_pred ccchhHHHHHHHHHHHHh--------------hhHHHhhhHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHh
Q 004517 531 GERAILATEARELQNRLL--------------SLSEERDKSLAVLDEMRETLEA---RLAAAEDM-----RKEAEEEKFE 588 (747)
Q Consensus 531 GEKAILaTEArELQSRL~--------------~LSeERdkaLaIIDEMr~TLEa---RLAaAeeE-----r~AAEeeKie 588 (747)
.++.+|.|++-.|+.||- .+.+|+..+-.=|.+|+..|+. .+...... ....++++.-
T Consensus 336 ~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 336 QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQL 415 (775)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999988888774 3556666665666666655542 23222222 1112333322
Q ss_pred HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCcccccccchhhhhh
Q 004517 589 KEESAR------------------ASLAEQEVIMEKVVQESKLLQQQA-EENSKLREFLMDRGRVVDSLQGEISVIC 646 (747)
Q Consensus 589 KEesAr------------------k~L~EQEalM~kVvEESrkLqqEA-EENsKLREFLMDRG~IVDsLQGEISVIc 646 (747)
.+...| ..+.+.+.+...+-+.-...+++. ++.-+++.-+-+.=.=|+.||++++=--
T Consensus 416 ~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 416 DEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 222222 456677777777665544445443 4555555555555555666666655433
No 33
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.99 E-value=31 Score=32.46 Aligned_cols=111 Identities=26% Similarity=0.350 Sum_probs=58.8
Q ss_pred hHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 503 DIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEA 582 (747)
Q Consensus 503 DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AA 582 (747)
....++.+.++++....+.-+- +-...+++++.|..+.+.+.... +.+...+.|+...+...+..
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~-----------l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~ 142 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQ-----------LQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKEL 142 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554433221 33444555555555555444433 66677777777777776666
Q ss_pred HHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 583 EEEKFEKE---ESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFL 628 (747)
Q Consensus 583 EeeKieKE---esArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFL 628 (747)
.++..+=. ...+.-..+++..+....+....|++...++--|+++|
T Consensus 143 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 191 (191)
T PF04156_consen 143 EKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQL 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 65554433 22223333344444445566666666666666666553
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.41 E-value=97 Score=37.71 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=27.4
Q ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 450 CRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKA 495 (747)
Q Consensus 450 ~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~ 495 (747)
..+..++..|..++..+..+=..+......+.+.......+++...
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ 652 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELK 652 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766666665555544444444443333
No 35
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=84.14 E-value=37 Score=37.87 Aligned_cols=38 Identities=34% Similarity=0.481 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 614 LQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 614 LqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
+.+++++...|-+ .|+.+||+|.-..+++..|+..+.+
T Consensus 152 ~~~s~~~~~~~~~-------~i~~~lg~~~~la~e~~~Lt~~Lk~ 189 (448)
T COG1322 152 IHESAEERSTLLE-------EIDRLLGEIQQLAQEAGNLTAALKG 189 (448)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455555555544 5789999999999999999999887
No 36
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=84.02 E-value=32 Score=40.92 Aligned_cols=75 Identities=31% Similarity=0.409 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHH-------Hhh
Q 004517 567 TLEARLAAAEDMRKEAEEEKF-EKEESARA----SLAEQEVIMEKVVQESKLLQQQA--EENS--KLREF-------LMD 630 (747)
Q Consensus 567 TLEaRLAaAeeEr~AAEeeKi-eKEesArk----~L~EQEalM~kVvEESrkLqqEA--EENs--KLREF-------LMD 630 (747)
+||..+-++-.||.|+..++. -|++.|-+ .|+|.-.++..++.|-.||-++- +.|+ |||.- +-.
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K 492 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEK 492 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 566677777777777766544 34444443 35567778888888877775543 3332 56643 334
Q ss_pred cCcccccccch
Q 004517 631 RGRVVDSLQGE 641 (747)
Q Consensus 631 RG~IVDsLQGE 641 (747)
.|.-|--||-|
T Consensus 493 ~ge~i~~L~sE 503 (961)
T KOG4673|consen 493 KGELITKLQSE 503 (961)
T ss_pred hhhHHHHHHHH
Confidence 45444445544
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.51 E-value=68 Score=34.41 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=14.1
Q ss_pred cccccccCCCCcccceeehh
Q 004517 232 PTLSAHANGLGATDIDISIF 251 (747)
Q Consensus 232 ~tls~~~~~~g~t~i~~~~f 251 (747)
.++-.-.||.|=|.|...|+
T Consensus 29 ~~~i~G~NG~GKStll~aI~ 48 (562)
T PHA02562 29 KTLITGKNGAGKSTMLEALT 48 (562)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34445579999999877664
No 38
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.29 E-value=1.3e+02 Score=37.41 Aligned_cols=10 Identities=50% Similarity=0.916 Sum_probs=7.7
Q ss_pred cccccccccc
Q 004517 311 GSLTAWTDFD 320 (747)
Q Consensus 311 ~~~~~w~~f~ 320 (747)
|++.+|+.-+
T Consensus 630 GLLDA~v~p~ 639 (1353)
T TIGR02680 630 GLLDAWVTAD 639 (1353)
T ss_pred CCcceeeCCC
Confidence 9999998433
No 39
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.91 E-value=98 Score=35.16 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=10.7
Q ss_pred ccccchhhhhhhhHHHHHHHhcc
Q 004517 636 DSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 636 DsLQGEISVIceDV~~LKervD~ 658 (747)
..||-|..+.-+--..|-.|..+
T Consensus 379 ~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 379 DALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 40
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=81.81 E-value=73 Score=33.51 Aligned_cols=115 Identities=10% Similarity=0.174 Sum_probs=83.3
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcchhHHHhHHHHHHHHHHHHHhcc
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKA-------AAVRGGLDIFVKMDELKQMLAHAKEAND 523 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~-------EAs~aG~DILaKVEELKeML~~AKEAND 523 (747)
+++.|...+.+...-|..-...++....|+..=+-.-+ .-++|. .+......+..++.+++..|..|.+++.
T Consensus 73 G~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~-~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~ 151 (339)
T cd09238 73 GLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDS-AARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSDE 151 (339)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 37888999999999999888888888888765333333 333343 4566777999999999999999999987
Q ss_pred ccchhhh---------c--------------------cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 004517 524 MHAGEIY---------G--------------------ERAILATEARELQNRLLSLSEERDKSLAVLDEMRE 566 (747)
Q Consensus 524 mhAGEVy---------G--------------------EKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~ 566 (747)
..-.-+. + .....+...+++-..|..|..+|......|.++..
T Consensus 152 ~v~~k~~~~~~~l~~L~~~~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~ 223 (339)
T cd09238 152 SLRRRIEDAMDGMLILDDEPAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKR 223 (339)
T ss_pred HHHHHHHHHHHHHHhcCcHhhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3221111 1 12344577888999999999999987777765554
No 41
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.76 E-value=1.2e+02 Score=37.55 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=97.9
Q ss_pred hhHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchh
Q 004517 453 DLLEEMIEDAKYN----KKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGE 528 (747)
Q Consensus 453 esLE~~IsdaK~n----K~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGE 528 (747)
+.|..-++.++++ ++.+...++...+.+.+.+.+.+++++-++....+-.. .+++++=++.-|.. ..
T Consensus 26 ~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~----~~~~~~~l~~~~~~-----~~ 96 (1109)
T PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKL----SAELRQQLNNERDE-----PR 96 (1109)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHhhhcc-----cc
Confidence 4566666655544 45778888889999999998888888777766655443 34444433321111 11
Q ss_pred hhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhH---------H
Q 004517 529 IYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMR---------KEAEEEKFEK---------E 590 (747)
Q Consensus 529 VyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr---------~AAEeeKieK---------E 590 (747)
-|-++.-+ .+|+.||.+.+.+ |.-+++-.++.+.|+..+...- +....+.+++ +
T Consensus 97 ~~~~~~s~----~~Leq~l~~~~~~----L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~ 168 (1109)
T PRK10929 97 SVPPNMST----DALEQEILQVSSQ----LLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNT 168 (1109)
T ss_pred cccccCCH----HHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 12222222 5555555544444 3333333333334441111111 1111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 591 ESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 591 esArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
.........-++-......+-..|++|...|.++.|++--|- |-++-++.-+-+.+..|+.....
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~---dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRS---ELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122222233445567788999999999999987764 55677777777777777665544
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.69 E-value=95 Score=34.76 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCcc-cccccchhhhhhhhHHHHHHHhcc
Q 004517 621 NSKLREFLMDRGRV-VDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 621 NsKLREFLMDRG~I-VDsLQGEISVIceDV~~LKervD~ 658 (747)
-..|+.-|-. |.| +++++.+...+-+++..|+.+.+.
T Consensus 457 i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~d 494 (569)
T PRK04778 457 IEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEE 494 (569)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666 887 677777788888888888877665
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.63 E-value=1.1e+02 Score=35.39 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 618 AEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 618 AEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
|+...+||+.=..--+.--+||-.+..-...|..|+..+.+
T Consensus 342 ad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~ 382 (546)
T PF07888_consen 342 ADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQM 382 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555555554444444455664555555567777777765
No 44
>PLN02939 transferase, transferring glycosyl groups
Probab=81.55 E-value=1.1e+02 Score=37.40 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=54.6
Q ss_pred HHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHH---------HhhhHHHHHHHHHHHHHHHHHH
Q 004517 504 IFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE---------ERDKSLAVLDEMRETLEARLAA 574 (747)
Q Consensus 504 ILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSe---------ERdkaLaIIDEMr~TLEaRLAa 574 (747)
...|||.|+.||..|+-.-+. |.-|.. .-|+||.++-+|.+ .|-..+..+++=-.-|+.||.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEK-AALVLD-------QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQA 369 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhc-------cchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999988754332 333333 34555555554432 2333333343333456677777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 575 AEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKL 613 (747)
Q Consensus 575 AeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrk 613 (747)
..++..+-- +.-++...|=.+.+.++++||++
T Consensus 370 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 370 SDHEIHSYI-------QLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred hHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhc
Confidence 666655433 33344455555666667777766
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.07 E-value=1.7e+02 Score=37.23 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=27.2
Q ss_pred hhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 004517 502 LDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEM 564 (747)
Q Consensus 502 ~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEM 564 (747)
..|-.+++.|++-...|++-..... +...+.-+...++..|..|.++..+....+.+.
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~e-----e~lr~q~ei~~l~~~LeELee~Lee~eeeLeel 374 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQ-----TALRQQEKIERYQADLEELEERLEEQNEVVEEA 374 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655533222 112233444444445555554444444444433
No 46
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.11 E-value=29 Score=40.43 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=14.2
Q ss_pred ceeeccccccccccccccc
Q 004517 300 PIVMPANAVANGSLTAWTD 318 (747)
Q Consensus 300 ~~~~~~na~~~~~~~~w~~ 318 (747)
-+.+.-|+-+|.+...|.+
T Consensus 380 ryy~~H~~GvH~V~L~wl~ 398 (717)
T PF10168_consen 380 RYYCYHNAGVHSVTLPWLS 398 (717)
T ss_pred eEEEEecCccEEEEeccHH
Confidence 3566678888877778887
No 47
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=80.09 E-value=26 Score=33.95 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 554 RDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSK 623 (747)
Q Consensus 554 RdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsK 623 (747)
|.-.+.+|++=+...+.=|+.|+..++.|++-+-+-++.=+++..|-..||+...++..++.+++-+.++
T Consensus 26 wkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~ 95 (154)
T PRK06568 26 KKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIE 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777778888888888888888888888777888888888888888888887777766554
No 48
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.54 E-value=47 Score=35.87 Aligned_cols=121 Identities=19% Similarity=0.270 Sum_probs=73.0
Q ss_pred HHHHHHHhhhHHHhhhHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 541 RELQNRLLSLSEERDKSLAVL-D---EMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQ 616 (747)
Q Consensus 541 rELQSRL~~LSeERdkaLaII-D---EMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqq 616 (747)
.-|-.||+.|.-|+.....-+ . -+-.+|++||+.-..++. +++..+=+|||.+|.++.-.-.+|+.
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~----------~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKV----------ELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 446666777777776664333 2 256677777766554433 33445556666666666666666654
Q ss_pred HHHHH----HHHHHHHh--------hcCcccccccchhhhhhhhHHHHHHHhccCcccccccccccccc
Q 004517 617 QAEEN----SKLREFLM--------DRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTC 673 (747)
Q Consensus 617 EAEEN----sKLREFLM--------DRG~IVDsLQGEISVIceDV~~LKervD~rlplskS~SsSqTsc 673 (747)
+.... .+||.-=+ +.-.||..||.-|.-+...=+.|+.+++..++ .-.|...+.|
T Consensus 150 e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s--~~~s~~d~~~ 216 (310)
T PF09755_consen 150 EKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVS--APPSPRDTVN 216 (310)
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CCCCcchHHh
Confidence 33111 12222111 23457888999999999999999999998544 3444444544
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.36 E-value=2.2e+02 Score=37.44 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 464 YNKKNLFKAMESVMNMMREVEIQERAAKEAKAA 496 (747)
Q Consensus 464 ~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~E 496 (747)
.-|+.|...++...+.++.+.+....-+.++..
T Consensus 1379 e~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~ 1411 (1930)
T KOG0161|consen 1379 ELKKKLQQRLQELEEQIEAANAKNASLEKAKNR 1411 (1930)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 50
>PRK11519 tyrosine kinase; Provisional
Probab=78.23 E-value=1.1e+02 Score=35.02 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004517 604 MEKVVQESKLLQQQAEENSKLREFLMD 630 (747)
Q Consensus 604 M~kVvEESrkLqqEAEENsKLREFLMD 630 (747)
|...-.+-+.|+.+++-|.+|=++|+.
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~ 391 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLN 391 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667777888877777766644
No 51
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=78.16 E-value=30 Score=34.25 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004517 601 EVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 601 EalM~kVvEESrkLqqEAE 619 (747)
+.+++.+.++..++-++|+
T Consensus 132 e~i~~~A~~eae~ii~~A~ 150 (205)
T PRK06231 132 SELEKEANRQANLIIFQAR 150 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 52
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.26 E-value=74 Score=30.96 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHhc
Q 004517 507 KMDELKQMLAHAKEAN 522 (747)
Q Consensus 507 KVEELKeML~~AKEAN 522 (747)
++.+++.-+...+++|
T Consensus 21 ~L~~~~~~l~~~~~~~ 36 (302)
T PF10186_consen 21 RLLELRSELQQLKEEN 36 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 53
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.20 E-value=16 Score=38.26 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHH
Q 004517 540 ARELQNRLLSLSEERDKSLAVLDEMR 565 (747)
Q Consensus 540 ArELQSRL~~LSeERdkaLaIIDEMr 565 (747)
..+|+.++..+..||+.|...+.+++
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888887776
No 54
>PRK12704 phosphodiesterase; Provisional
Probab=76.91 E-value=97 Score=34.88 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 004517 613 LLQQQAEENS 622 (747)
Q Consensus 613 kLqqEAEENs 622 (747)
+.+.+|.+++
T Consensus 177 ~~~~~~~~~a 186 (520)
T PRK12704 177 EIEEEAKEEA 186 (520)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=76.24 E-value=1.2e+02 Score=32.75 Aligned_cols=74 Identities=30% Similarity=0.461 Sum_probs=50.8
Q ss_pred hHHHhHHHHHHHHHHHHHhcccc--chhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 503 DIFVKMDELKQMLAHAKEANDMH--AGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRK 580 (747)
Q Consensus 503 DILaKVEELKeML~~AKEANDmh--AGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~ 580 (747)
.|+.++.+|++|+..++.+|..| ..|+|.|=-=|.++++++-.++..|+.+= +|.|..+=.=+-.|.+.|+
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea-------qe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA-------QEYHEEMIKLFEEADELRK 207 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999886654 46788888888888888888888888764 3333333333334444444
Q ss_pred HHH
Q 004517 581 EAE 583 (747)
Q Consensus 581 AAE 583 (747)
-|.
T Consensus 208 ead 210 (294)
T COG1340 208 EAD 210 (294)
T ss_pred HHH
Confidence 443
No 56
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=75.52 E-value=43 Score=32.10 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 597 LAEQEVIMEKVVQESKLLQQQAEENS 622 (747)
Q Consensus 597 L~EQEalM~kVvEESrkLqqEAEENs 622 (747)
-.+.+.+++.+.++..++.++|++..
T Consensus 104 e~~~~~il~~A~~ea~~~~~~a~~~i 129 (184)
T CHL00019 104 EREKENLINQAKEDLERLENYKNETI 129 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666555544
No 57
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.19 E-value=40 Score=39.41 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=7.2
Q ss_pred HHHhhcccchHHH
Q 004517 9 CLMEMFPQIDTRL 21 (747)
Q Consensus 9 ~L~e~FPqvD~ri 21 (747)
.+..+.|.-|...
T Consensus 30 ~~~~l~P~~~~~~ 42 (771)
T TIGR01069 30 DAIGLKPPKSVEE 42 (771)
T ss_pred HHhcCCCCCCHHH
Confidence 4455666666543
No 58
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=74.64 E-value=42 Score=40.86 Aligned_cols=7 Identities=14% Similarity=-0.111 Sum_probs=3.7
Q ss_pred CCcccee
Q 004517 53 LTSSSVI 59 (747)
Q Consensus 53 ~~~~s~~ 59 (747)
|.-|.||
T Consensus 24 GgFGtVY 30 (1021)
T PTZ00266 24 GRFGEVF 30 (1021)
T ss_pred CCCeEEE
Confidence 4455555
No 59
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.46 E-value=44 Score=39.07 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=9.4
Q ss_pred HHHHhhcccchHHHHH
Q 004517 8 RCLMEMFPQIDTRLLK 23 (747)
Q Consensus 8 r~L~e~FPqvD~riLk 23 (747)
+.|+.+.|-.|...++
T Consensus 29 ~~l~~l~P~~~~~~i~ 44 (782)
T PRK00409 29 EKVLQLDPETDFEEVE 44 (782)
T ss_pred HHHHcCCCCCCHHHHH
Confidence 3455677777765433
No 60
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.04 E-value=73 Score=29.31 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 534 AILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEA 582 (747)
Q Consensus 534 AILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AA 582 (747)
.-|.+++..++..+..|..+++.+-..+++.+...+.|-..-+.+...+
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~ 110 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSEL 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888888777777666555544444433
No 61
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=73.96 E-value=1.8e+02 Score=33.79 Aligned_cols=126 Identities=20% Similarity=0.277 Sum_probs=73.8
Q ss_pred HHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 504 IFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEER---DKSLAVLDEMRETLEARLAAAEDMRK 580 (747)
Q Consensus 504 ILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeER---dkaLaIIDEMr~TLEaRLAaAeeEr~ 580 (747)
+|..++--|..+.+|-.-|. -|---.-|||.++-.|+.+. -.+|-.=.-+...|..+|...++.-.
T Consensus 144 LLe~lqsdk~t~SRAlsQN~-----------eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~ 212 (617)
T PF15070_consen 144 LLEQLQSDKATASRALSQNR-----------ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLH 212 (617)
T ss_pred HHhhhcccchHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666777766664 36666778888888888776 56677777777788888887766665
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Q 004517 581 EAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQG 640 (747)
Q Consensus 581 AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQG 640 (747)
.-++..-.|+.-+..+-.....+++..-+-..--|+-+-|+.-|..-|+-.=+.+|.||-
T Consensus 213 ~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~ 272 (617)
T PF15070_consen 213 NLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQH 272 (617)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544455444444444333444333333333344455555554443333444444443
No 62
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=73.65 E-value=23 Score=38.20 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=42.7
Q ss_pred hhhccchhHHHHHHHHHHHHhhhH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 528 EIYGERAILATEARELQNRLLSLS-EERDKSLAVLDEMRETLEARLAAAEDMRKEAEE 584 (747)
Q Consensus 528 EVyGEKAILaTEArELQSRL~~LS-eERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEe 584 (747)
...|-|..|+...++ |-+|+ +||..+=..|.+.|+.+|.-|.+.+++.++++.
T Consensus 31 ~~lgkkg~l~~~~~~----l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~ 84 (339)
T PRK00488 31 KYLGKKGELTELLKG----LGKLPPEERKEAGALINELKQAIEAALEERKEELEAAAL 84 (339)
T ss_pred HHhCCchHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888766555 55666 889999999999999999999998887776664
No 63
>PRK11637 AmiB activator; Provisional
Probab=72.95 E-value=1.4e+02 Score=32.01 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=10.9
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH
Q 004517 453 DLLEEMIEDAKYNKKNLFKAMESVMN 478 (747)
Q Consensus 453 esLE~~IsdaK~nK~~L~ssmEsi~~ 478 (747)
..+++-|.+.++.++.+...++.+..
T Consensus 57 ~~~~~~i~~~~~~~~~~~~~l~~l~~ 82 (428)
T PRK11637 57 AAKEKSVRQQQQQRASLLAQLKKQEE 82 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.69 E-value=2e+02 Score=33.82 Aligned_cols=41 Identities=37% Similarity=0.503 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRK 580 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~ 580 (747)
|.-|-.+||+||..|.-.|-.=-..| ++||.||+.-+.-|.
T Consensus 465 lr~ene~Lq~Kl~~L~~aRq~DKq~l----~~LEkrL~eE~~~R~ 505 (697)
T PF09726_consen 465 LRQENEQLQNKLQNLVQARQQDKQSL----QQLEKRLAEERRQRA 505 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 44444589999999987775533333 456666654443333
No 65
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=71.17 E-value=73 Score=29.16 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004517 597 LAEQEVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 597 L~EQEalM~kVvEESrkLqqEAE 619 (747)
..+.+.+++.+-++..++-++|+
T Consensus 84 ~~~~~~~~~~a~~ea~~~~~~a~ 106 (156)
T PRK05759 84 AQIIEEAKAEAEAEAARIKAQAQ 106 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544444443
No 66
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.17 E-value=87 Score=36.70 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=36.5
Q ss_pred hhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 004517 527 GEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLA-AAEDMRKEAEE 584 (747)
Q Consensus 527 GEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLA-aAeeEr~AAEe 584 (747)
.++..|+..|.+-|..|..|+..+.+.-.....=+++|.+.+..++- ..++||+-++|
T Consensus 582 ~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~E 640 (717)
T PF10168_consen 582 QELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKE 640 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 34455677777888888888877777666666667777777766443 33334444333
No 67
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=70.98 E-value=53 Score=33.44 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhh
Q 004517 596 SLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVIC 646 (747)
Q Consensus 596 ~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIc 646 (747)
+-++.+.+++++.+|..++.+++.+.... ++-+..+.|+.+|.-+-
T Consensus 84 A~~~~~~il~~A~~ea~~~~~~a~~~ie~-----Ek~~a~~~L~~~v~~la 129 (250)
T PRK14474 84 ADEQRQHLLNEAREDVATARDEWLEQLER-----EKQEFFKALQQQTGQQM 129 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34456667777777777777666654432 34445555666655443
No 68
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.67 E-value=1.2e+02 Score=30.33 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=32.2
Q ss_pred chhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004517 526 AGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVI 603 (747)
Q Consensus 526 AGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEal 603 (747)
.-....|+.-|..|.+.|...+.+|....++. +..-..++.+++.-+......++-+.+=.-.-+.|+..-+..
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l----~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQL----ERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555433322 222223334444444444444333333333334444444333
No 69
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.26 E-value=1.2e+02 Score=30.37 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=43.8
Q ss_pred ccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcchhHHHhHHHHHHH
Q 004517 449 ICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEI--------------QERAAKEAKAAAVRGGLDIFVKMDELKQM 514 (747)
Q Consensus 449 ~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVEL--------------qEekAkqAK~EAs~aG~DILaKVEELKeM 514 (747)
--.|..|...|.++...|..|.--+..+..-+.++.. .=..-+....++..+..++=.+++-|++=
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 3356778888888888888777766665555555432 22223445556666666666677766665
Q ss_pred HHHHH
Q 004517 515 LAHAK 519 (747)
Q Consensus 515 L~~AK 519 (747)
+...+
T Consensus 133 l~fl~ 137 (312)
T PF00038_consen 133 LEFLK 137 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 70
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.04 E-value=2e+02 Score=33.10 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004517 610 ESKLLQQQAEENSKLREFLMD 630 (747)
Q Consensus 610 ESrkLqqEAEENsKLREFLMD 630 (747)
+-+.|+.+++-|..|-++|+.
T Consensus 371 ~~~~L~R~~~~~~~lY~~lL~ 391 (726)
T PRK09841 371 EVLRLSRDVEAGRAVYLQLLN 391 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555556655555555543
No 71
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=69.95 E-value=71 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004517 599 EQEVIMEKVVQESKLLQQQAEE 620 (747)
Q Consensus 599 EQEalM~kVvEESrkLqqEAEE 620 (747)
+.+.++++..+|..++.+.+++
T Consensus 104 ~~~~ii~~A~~ea~~~~~~a~~ 125 (167)
T PRK08475 104 LTQKIEKQTKDDIENLIKSFEE 125 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=69.12 E-value=1.8e+02 Score=33.73 Aligned_cols=146 Identities=25% Similarity=0.349 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHH--------------H
Q 004517 511 LKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAA--------------E 576 (747)
Q Consensus 511 LKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaA--------------e 576 (747)
|+++|.+..-.=|-.|.-..+|.+++.-..++|-..+..|++|+++...-|.|.-..|.. |-.. +
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e-Lk~q~~~~~~~~~pa~pse 80 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE-LKNQMAEPPPPEPPAGPSE 80 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCccccccchH
Confidence 445555555455556666677777777777777777777777777777776665544433 2111 1
Q ss_pred HH-HHHHHHHHH--hHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhH
Q 004517 577 DM-RKEAEEEKF--EKEESAR---ASLAEQEVIMEKV-VQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDV 649 (747)
Q Consensus 577 eE-r~AAEeeKi--eKEesAr---k~L~EQEalM~kV-vEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV 649 (747)
.+ .-.+|-+.+ +.|..+. +.+.+.+.+.... -++.|.+++ .+.--.+++.+-||.+++=.||.+=..|..=|
T Consensus 81 ~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~EL-E~~le~~~e~~~D~~kLLe~lqsdk~t~SRAl 159 (617)
T PF15070_consen 81 VEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAEL-EEELERLQEQQEDRQKLLEQLQSDKATASRAL 159 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 11 011111222 2222222 1222233332222 223333332 23344578888999999999998877776544
Q ss_pred ---HHHHHHhcc
Q 004517 650 ---RLLKEKFDE 658 (747)
Q Consensus 650 ---~~LKervD~ 658 (747)
+.||+++.+
T Consensus 160 sQN~eLK~QL~E 171 (617)
T PF15070_consen 160 SQNRELKEQLAE 171 (617)
T ss_pred HhHHHHHHHHHH
Confidence 357777765
No 73
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.68 E-value=66 Score=32.21 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q 004517 561 LDEMRETLEARLAAAEDMRKEAEEEKFEKEESA-RASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQ 639 (747)
Q Consensus 561 IDEMr~TLEaRLAaAeeEr~AAEeeKieKEesA-rk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQ 639 (747)
.++.+...+..++.+++....|+++..+--+.| ..+-++.+.+++.+.+|..++.++|...... ++.+.+..|+
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~-----E~~~a~~~l~ 122 (246)
T TIGR03321 48 ADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRR-----EQAALSDELR 122 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 334444444444444444444444333322222 3445566777777777777777777665543 4555666667
Q ss_pred chhhhhh
Q 004517 640 GEISVIC 646 (747)
Q Consensus 640 GEISVIc 646 (747)
.||.-+-
T Consensus 123 ~ei~~la 129 (246)
T TIGR03321 123 RRTGAEV 129 (246)
T ss_pred HHHHHHH
Confidence 6665544
No 74
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.49 E-value=1.7e+02 Score=31.13 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=13.5
Q ss_pred HHHHHhhhHHHhhhHHHHHHHHHHHH
Q 004517 543 LQNRLLSLSEERDKSLAVLDEMRETL 568 (747)
Q Consensus 543 LQSRL~~LSeERdkaLaIIDEMr~TL 568 (747)
|..++|.|++|.+.+-.||-+=|+.|
T Consensus 105 l~~n~Q~lkeE~dd~keiIs~kr~~~ 130 (246)
T KOG4657|consen 105 LRRNLQLLKEEKDDSKEIISQKRQAL 130 (246)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444555556665555555544443
No 75
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.48 E-value=3.9e+02 Score=35.34 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhh
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIY 530 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVy 530 (747)
.++..++.-......|+.+-.-++.+..-++++|..-.+.+.-|..+.. ++..|++=+..-.|.|.+ +-
T Consensus 916 ~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~-------~~~~l~~e~~~~~e~~~k----L~ 984 (1930)
T KOG0161|consen 916 RLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAEN-------KLKNLEEEINSLDENISK----LS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----HH
Confidence 3444444444445555556677777777777777766555555544432 233333322222222222 01
Q ss_pred ccch-------hHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 004517 531 GERA-------ILATEARELQNRLLSLSEERDKSLAVLDEMRETLEA 570 (747)
Q Consensus 531 GEKA-------ILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEa 570 (747)
.||. =|.+.++..+-++.+|...+.+.-.-|++|..+|+.
T Consensus 985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 245556666666667777777777777777777664
No 76
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=68.37 E-value=81 Score=36.07 Aligned_cols=49 Identities=31% Similarity=0.436 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHh
Q 004517 474 ESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLL 548 (747)
Q Consensus 474 Esi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~ 548 (747)
+-|.+||++.|-...+. ...++|++||+.|+|.|.-+| +|-..|.+||-
T Consensus 242 ehv~km~kdle~Lq~aE---------------qsl~dlQk~Lekar~e~rnva-----------vek~~lerkl~ 290 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQRAE---------------QSLEDLQKRLEKAREEQRNVA-----------VEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhchh-----------hhhhhHHHHHh
Confidence 45677777776443222 246899999999999987755 45555555554
No 77
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=68.14 E-value=88 Score=29.11 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhh
Q 004517 596 SLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQD 648 (747)
Q Consensus 596 ~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceD 648 (747)
+..+.+.+++....+..++.++|+.... -++-+..-.|+.|+.-+--+
T Consensus 84 a~~~~~~i~~~A~~ea~~~~~~a~~~i~-----~e~~~a~~~l~~ei~~lA~~ 131 (159)
T PRK13461 84 AENVYEEIVKEAHEEADLIIERAKLEAQ-----REKEKAEYEIKNQAVDLAVL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666777777666665543 23444555555555544433
No 78
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=68.09 E-value=2.1e+02 Score=32.09 Aligned_cols=189 Identities=22% Similarity=0.244 Sum_probs=107.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHH------------HHHHHHHhc
Q 004517 455 LEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQ------------MLAHAKEAN 522 (747)
Q Consensus 455 LE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKe------------ML~~AKEAN 522 (747)
+.+-+..+-..|-..+.-++....++.+..++=+++...+..|.+.--..--++.+|.+ =|..+++-.
T Consensus 46 ~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~ 125 (522)
T PF05701_consen 46 LKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQY 125 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 33334444556667778888888888888877666665555554443333334444433 223333332
Q ss_pred cccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004517 523 DMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRE----------TLEARLAAAEDMRKEAEEEKFEKEES 592 (747)
Q Consensus 523 DmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~----------TLEaRLAaAeeEr~AAEeeKieKEes 592 (747)
.. +-.|=-...-|.+.|+.-+..+-++|+.++.=.+++.. .|...|.+.++....+....++.++.
T Consensus 126 ~~----~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee 201 (522)
T PF05701_consen 126 AS----AVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEE 201 (522)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22333345567778888888888999998877666543 34455555555554443333333322
Q ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhh
Q 004517 593 ARASL-------AEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQ 647 (747)
Q Consensus 593 Ark~L-------~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIce 647 (747)
-..++ ..-+.-|...-++-+.|..+.+..-.|..-|..--.-+..||.||.-...
T Consensus 202 ~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 202 RIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 12223355666666667777766666666666655666777777766655
No 79
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.86 E-value=1.7e+02 Score=31.52 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=13.7
Q ss_pred cccchhhhhhhhHHHHHHHhcc
Q 004517 637 SLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 637 sLQGEISVIceDV~~LKervD~ 658 (747)
.++|++.-+-.++..++.+..+
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666666665554
No 80
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.79 E-value=1.4e+02 Score=35.74 Aligned_cols=140 Identities=29% Similarity=0.331 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhcc
Q 004517 453 DLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGE 532 (747)
Q Consensus 453 esLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGE 532 (747)
..|.+=++.++..|+.|-..+......++....+=..+ =.++++|+.=|..+++.|-+..-++-+.
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~--------------E~~L~eLq~eL~~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKES--------------EQKLEELQSELESAKESNSLAETQLKAM 657 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666554444333333322222111 2356777777888888888877777777
Q ss_pred chh----------HHHHHHHHHHHHhhhHHH----hhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHH
Q 004517 533 RAI----------LATEARELQNRLLSLSEE----RDK---SLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKE-ESAR 594 (747)
Q Consensus 533 KAI----------LaTEArELQSRL~~LSeE----Rdk---aLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKE-esAr 594 (747)
+.+ +-+|+++|+++...|-.| |.. +++=-.++...|+++-........+-+..|+..| +.|.
T Consensus 658 ~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~Eiaa 737 (769)
T PF05911_consen 658 KESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAA 737 (769)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHH
Confidence 554 478999999999988765 322 2333344444454443322222223344455656 5565
Q ss_pred HH--HHHHHHHHHH
Q 004517 595 AS--LAEQEVIMEK 606 (747)
Q Consensus 595 k~--L~EQEalM~k 606 (747)
++ |+|=-.++..
T Consensus 738 AA~KLAECQeTI~s 751 (769)
T PF05911_consen 738 AAEKLAECQETIAS 751 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 55 7774444443
No 81
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=67.38 E-value=79 Score=30.59 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004517 561 LDEMRETLEARLAAAEDMRKEAEEEKFEKE 590 (747)
Q Consensus 561 IDEMr~TLEaRLAaAeeEr~AAEeeKieKE 590 (747)
|++-+..++.-|..|++.+..|++.+-+-|
T Consensus 60 l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye 89 (181)
T PRK13454 60 LAERQGTITNDLAAAEELKQKAVEAEKAYN 89 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333333333333333
No 82
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=67.13 E-value=92 Score=29.22 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004517 599 EQEVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 599 EQEalM~kVvEESrkLqqEAE 619 (747)
+.+.+++...+|..++-++++
T Consensus 104 ~~~~~~~~A~~ea~~~~~~a~ 124 (156)
T CHL00118 104 IVENELKQAQKYIDSLLNEAT 124 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555554444443
No 83
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.12 E-value=4.7 Score=45.67 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=0.0
Q ss_pred hhccchhHHHHHHHHHHHHhhhH
Q 004517 529 IYGERAILATEARELQNRLLSLS 551 (747)
Q Consensus 529 VyGEKAILaTEArELQSRL~~LS 551 (747)
...|+.-|..|...|+.|+.++.
T Consensus 205 L~~e~~~L~~e~~~l~~~~~~~~ 227 (713)
T PF05622_consen 205 LQEEKESLQSENEELQERLSQLE 227 (713)
T ss_dssp -----------------------
T ss_pred HHHhHHHhhhhhhhhhcccCCCC
Confidence 45566666666666666666544
No 84
>PLN03188 kinesin-12 family protein; Provisional
Probab=66.89 E-value=3e+02 Score=35.01 Aligned_cols=60 Identities=22% Similarity=0.415 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHH---hHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhh
Q 004517 477 MNMMREVEIQERAAKEAKAAAVRGGLDIFV---KMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSL 550 (747)
Q Consensus 477 ~~MmrEVELqEekAkqAK~EAs~aG~DILa---KVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~L 550 (747)
-.+|.|-++..++-+ -+-++|. .+..+++.+.+-|.-.|| |||-+|-.|.+.|.+||+-+
T Consensus 943 ~~~~~~~~~~~~~y~--------~~p~~~~~~~e~~~~~~e~~~~~~~~d~------~ErEvll~eI~dlr~qL~~~ 1005 (1320)
T PLN03188 943 ASLMHEHKLLKEKYE--------NHPEVLRTKIELKRVQDELEHYRNFYDM------GEREVLLEEIQDLRSQLQYY 1005 (1320)
T ss_pred hhhhhhHHHHHHHhh--------cChhhhhhhHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHHHHHHHHhh
Confidence 345555555533222 4444444 344556667776665555 79999999999999999876
No 85
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.81 E-value=3.1e+02 Score=34.29 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 004517 539 EARELQNRLLSLSEERDKSLAVLDEMR---ETLEARLAAAEDMRKEAEE 584 (747)
Q Consensus 539 EArELQSRL~~LSeERdkaLaIIDEMr---~TLEaRLAaAeeEr~AAEe 584 (747)
+.+..|.|+..|.+.=++...-+.+|| -+.|+-++....+-.+-..
T Consensus 289 ~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~ 337 (1074)
T KOG0250|consen 289 EIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDE 337 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhH
Confidence 344555555566665556666666666 3445555555544444333
No 86
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=66.61 E-value=1.7e+02 Score=33.33 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 004517 595 ASLAEQEVIMEKVVQE-SKLLQQQAEENS 622 (747)
Q Consensus 595 k~L~EQEalM~kVvEE-SrkLqqEAEENs 622 (747)
++-.+=|.|-++|.++ |+++.++.+++.
T Consensus 110 ~L~~~F~~LA~~ile~k~~~f~~~~~~~l 138 (475)
T PRK10361 110 RLSEQFENLANRIFEHSNRRVDEQNRQSL 138 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555543 566666666663
No 87
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.22 E-value=1.3e+02 Score=30.98 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.8
Q ss_pred ccchhhh
Q 004517 524 MHAGEIY 530 (747)
Q Consensus 524 mhAGEVy 530 (747)
..|-+||
T Consensus 172 ~ka~evL 178 (297)
T PF02841_consen 172 VKAEEVL 178 (297)
T ss_dssp TTHHHHH
T ss_pred ccHHHHH
Confidence 3455665
No 88
>PRK03918 chromosome segregation protein; Provisional
Probab=65.78 E-value=2.5e+02 Score=32.13 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=12.9
Q ss_pred ccccccCCCCcccceeeh
Q 004517 233 TLSAHANGLGATDIDISI 250 (747)
Q Consensus 233 tls~~~~~~g~t~i~~~~ 250 (747)
++--..||.|-|+|...|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 334446899999998765
No 89
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=65.76 E-value=98 Score=29.34 Aligned_cols=16 Identities=0% Similarity=0.094 Sum_probs=7.6
Q ss_pred hcCcccccccchhhhh
Q 004517 630 DRGRVVDSLQGEISVI 645 (747)
Q Consensus 630 DRG~IVDsLQGEISVI 645 (747)
+|-+.+.-|+.||+-+
T Consensus 118 e~~~a~~el~~e~~~l 133 (167)
T PRK14475 118 AEAQAAADVKAAAVDL 133 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555443
No 90
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=65.13 E-value=1.1e+02 Score=29.59 Aligned_cols=58 Identities=28% Similarity=0.323 Sum_probs=42.5
Q ss_pred hhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 004517 529 IYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRE---TLEARLAAAEDMRKEAEEEK 586 (747)
Q Consensus 529 VyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~---TLEaRLAaAeeEr~AAEeeK 586 (747)
+=.+...++++.+.|..-|..|+.||..---.+++|+. .|+.+.--........|.++
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44566788999999999999999999998888888864 45555555555444444443
No 91
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=65.06 E-value=1e+02 Score=29.21 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhh
Q 004517 599 EQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVI 645 (747)
Q Consensus 599 EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVI 645 (747)
+.+.+++.+-++..++..+|+.... -++-+...-|+.+|.-+
T Consensus 101 ~~~~~~~~A~~e~~~~~~~a~~~i~-----~e~~~a~~~l~~qi~~l 142 (174)
T PRK07352 101 IRAEIEKQAIEDMARLKQTAAADLS-----AEQERVIAQLRREAAEL 142 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544332 22333444444444433
No 92
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=64.31 E-value=1.1e+02 Score=29.09 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 561 LDEMRETLEARLAAAEDMRKEAEEEKFEKEESAR-ASLAEQEVIMEKVVQESKLLQQQAEENSKL 624 (747)
Q Consensus 561 IDEMr~TLEaRLAaAeeEr~AAEeeKieKEesAr-k~L~EQEalM~kVvEESrkLqqEAEENsKL 624 (747)
.++.+...+..++.++.....|+++..+--+.|+ .+-.+.+.+++...+++.++.++|+.....
T Consensus 61 Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~ 125 (175)
T PRK14472 61 AHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQ 125 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544444333322222 334556667777777777777777766543
No 93
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=64.23 E-value=54 Score=40.02 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.5
Q ss_pred eeehhc
Q 004517 247 DISIFG 252 (747)
Q Consensus 247 ~~~~f~ 252 (747)
|++-||
T Consensus 225 DVWSLG 230 (1021)
T PTZ00266 225 DMWALG 230 (1021)
T ss_pred HHHHHH
Confidence 444444
No 94
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=63.40 E-value=1.7e+02 Score=29.41 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=20.5
Q ss_pred HhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004517 553 ERDKSLAVLDEMRE-TLEARLAAAEDMRKEAEE 584 (747)
Q Consensus 553 ERdkaLaIIDEMr~-TLEaRLAaAeeEr~AAEe 584 (747)
.-.++=.+|+|||. .+..+...|+.|..+|+.
T Consensus 128 ~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~ 160 (264)
T PF06008_consen 128 ALAEAQRMLEEMRKRDFTPQRQNAEDELKEAED 160 (264)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 34455567777732 366677777777777765
No 95
>PRK09039 hypothetical protein; Validated
Probab=63.06 E-value=2.1e+02 Score=30.48 Aligned_cols=94 Identities=24% Similarity=0.247 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHhhhHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 535 ILATEARELQNRLLSLSEERDKSL---AVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQES 611 (747)
Q Consensus 535 ILaTEArELQSRL~~LSeERdkaL---aIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEES 611 (747)
-+...+..|+.+|.....+-..+. ..|..==..|.+.|++.+.+..++|++..+....-..+ +..|-..+.++.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L---~~~L~~a~~~~~ 189 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL---GRRLNVALAQRV 189 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 334444445554444443333332 22222224456667777777777776653222222222 233333333446
Q ss_pred HHHHHHHHHH-HHHHHHHhhc
Q 004517 612 KLLQQQAEEN-SKLREFLMDR 631 (747)
Q Consensus 612 rkLqqEAEEN-sKLREFLMDR 631 (747)
+.|.+=..+= ..||+.|-++
T Consensus 190 ~~l~~~~~~~~~~l~~~~~~~ 210 (343)
T PRK09039 190 QELNRYRSEFFGRLREILGDR 210 (343)
T ss_pred HHHHHhHHHHHHHHHHHhCCC
Confidence 6665543332 3568888776
No 96
>PTZ00121 MAEBL; Provisional
Probab=62.92 E-value=3.3e+02 Score=35.63 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=24.8
Q ss_pred cCCCCcceeeecCCCCcchhhccccccccccCCCcccccCCCcccccc
Q 004517 158 YGNPESEEVILLGKTPESVVEVGSDKASTVMPNECGNDDLGGACANTE 205 (747)
Q Consensus 158 y~n~esee~i~l~~~~~~~~~~g~d~~s~v~p~~~~n~~~~~~c~~~e 205 (747)
||+..----|+-.+|..++.-.=-+--..+-||.-....+-|.|-|.-
T Consensus 628 ~g~~~~ky~i~s~~ta~t~qsll~~~~~~icpnh~~pgra~GSCPNYG 675 (2084)
T PTZ00121 628 FGEDEFKYDIISNKTAGTAQSLFHDNKDDTCPNHSIEGRAHGSCPNYG 675 (2084)
T ss_pred cCCCceeeeeecccccchHHHHHhccccccCCCCCCcccccCCCCCCC
Confidence 555554444555555444333223333445566666666677776643
No 97
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=61.70 E-value=1.2e+02 Score=34.36 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhcCcccccccchh
Q 004517 619 EENSKLREFLMDRGRVVDSLQGEI 642 (747)
Q Consensus 619 EENsKLREFLMDRG~IVDsLQGEI 642 (747)
...-|-.|-.-+|=.|..-+|..|
T Consensus 318 ~ae~K~~Eaq~er~~iAkD~qk~~ 341 (489)
T PF05262_consen 318 EAEKKEEEAQQERKEIAKDQQKLI 341 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665444443
No 98
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=61.45 E-value=2.2e+02 Score=30.12 Aligned_cols=113 Identities=11% Similarity=0.171 Sum_probs=79.0
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcchhHHHhHHHHHHHHHHHHHhc
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKA--------AAVRGGLDIFVKMDELKQMLAHAKEAN 522 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~--------EAs~aG~DILaKVEELKeML~~AKEAN 522 (747)
+|+.|...+.+...-+..--..++....|+.+=+-..+..+. |. .+..+...+..++.+++..|+.|..++
T Consensus 72 g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~-k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD 150 (353)
T cd09236 72 GLERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRR-KFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASD 150 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 478899999999999988888888888888765444444333 22 235566788899999999999999887
Q ss_pred cccchhh---------h--c------------------cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 004517 523 DMHAGEI---------Y--G------------------ERAILATEARELQNRLLSLSEERDKSLAVLDEM 564 (747)
Q Consensus 523 DmhAGEV---------y--G------------------EKAILaTEArELQSRL~~LSeERdkaLaIIDEM 564 (747)
...-.-+ + + +-.......|++-..|..|..+|.+.+.-+.+.
T Consensus 151 ~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k 221 (353)
T cd09236 151 ELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTK 221 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6532211 1 1 222345566777888888999998877666443
No 99
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.31 E-value=4.2e+02 Score=33.23 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=20.0
Q ss_pred cccccchhhhhhhhHHHHHHHh----ccCcccccccccc
Q 004517 635 VDSLQGEISVICQDVRLLKEKF----DERVPLSKSVSSS 669 (747)
Q Consensus 635 VDsLQGEISVIceDV~~LKerv----D~rlplskS~SsS 669 (747)
+-.|--|.--+.++++..++.. .+.+.+.++++.-
T Consensus 417 ~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 417 INSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655 3445566666543
No 100
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.25 E-value=1.6e+02 Score=28.30 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=31.2
Q ss_pred HHHHHHHhhhHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004517 541 RELQNRLLSLSEERDKSL--------AVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARA 595 (747)
Q Consensus 541 rELQSRL~~LSeERdkaL--------aIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk 595 (747)
-+.|-+...-..|||=|+ .+|.-+. +|-.++...++..+++.++.....+.+++
T Consensus 89 ~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~-~li~~l~~~~~~~~~~~kq~~~~~~~~~~ 150 (192)
T PF05529_consen 89 TEDQVLAKKFRAQRNMYISGFALFLSLVIRRVH-SLIKELIKLEEKLEALKKQAESASEAAEK 150 (192)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 345555566688999887 3555555 45556666666665555554444333333
No 101
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.08 E-value=1.2e+02 Score=35.61 Aligned_cols=12 Identities=0% Similarity=-0.036 Sum_probs=4.9
Q ss_pred ehhccccccccc
Q 004517 249 SIFGISQEVGSC 260 (747)
Q Consensus 249 ~~f~i~~~~~~~ 260 (747)
+.-..+...+.|
T Consensus 280 a~a~~a~~~~~~ 291 (782)
T PRK00409 280 ARARYAKALKAT 291 (782)
T ss_pred HHHHHHHHCCCc
Confidence 333334444443
No 102
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=61.04 E-value=1.2e+02 Score=29.36 Aligned_cols=84 Identities=37% Similarity=0.353 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhHHHhhhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHH
Q 004517 538 TEARELQNRLLSLSEERDKSLA-----------------VLDEMRETLEARLAAAEDMRKEAEEEKFE-----KEESARA 595 (747)
Q Consensus 538 TEArELQSRL~~LSeERdkaLa-----------------IIDEMr~TLEaRLAaAeeEr~AAEeeKie-----KEesArk 595 (747)
.|+++||.++..|.-||-.=-- ++.|--.+||.||-|-.=+|=+--++... =|.+-..
T Consensus 14 ~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~q 93 (120)
T PF10482_consen 14 KEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHLQ 93 (120)
T ss_pred HHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHH
Confidence 4667777777777766643222 34444456788887766665444333322 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 596 SLAEQEVIMEKVVQESKLLQQQAEENSKLREFL 628 (747)
Q Consensus 596 ~L~EQEalM~kVvEESrkLqqEAEENsKLREFL 628 (747)
.|. .+-..+.|-..|+ +||-+|+|-|
T Consensus 94 sLq----~i~~L~nE~n~L~---eEN~~L~eEl 119 (120)
T PF10482_consen 94 SLQ----HIFELTNEMNTLK---EENKKLKEEL 119 (120)
T ss_pred HHH----HHHHHHHHHHhHH---HHHHHHHHHh
Confidence 332 1233334444554 3566666543
No 103
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.51 E-value=29 Score=34.54 Aligned_cols=64 Identities=25% Similarity=0.411 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHH
Q 004517 506 VKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARL 572 (747)
Q Consensus 506 aKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRL 572 (747)
+-.+.|...+..-++--.+..--+-.|- ++.+-..+++||.++..++++.+.+++.=. +++..|
T Consensus 102 VP~~~~~~~l~~l~~~g~v~~~~~~~~D--vT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l 165 (262)
T PF14257_consen 102 VPADKFDSFLDELSELGKVTSRNISSED--VTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLL 165 (262)
T ss_pred ECHHHHHHHHHHHhccCceeeeeccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 3347777777777633222222222222 677888999999999999999999987332 444433
No 104
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=60.37 E-value=1.5e+02 Score=27.70 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 557 SLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKL 613 (747)
Q Consensus 557 aLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrk 613 (747)
...+|++=+..+...|..|+..+..|++.+-+-++.=.++..|-..+++....+...
T Consensus 27 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~ 83 (159)
T PRK09173 27 IARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEA 83 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444444444444444444444444443
No 105
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=60.08 E-value=2.3e+02 Score=29.85 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=64.7
Q ss_pred HHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhc-------------------------------------c----ch
Q 004517 496 AAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYG-------------------------------------E----RA 534 (747)
Q Consensus 496 EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyG-------------------------------------E----KA 534 (747)
.++.....+-.++.+++.-|..|..++.+...-+.. + -.
T Consensus 118 ~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~ 197 (356)
T cd09237 118 PSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVL 197 (356)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHH
Confidence 455666777778888888888887776543322111 1 11
Q ss_pred hHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH------H---HHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHH
Q 004517 535 ILATEARELQNRLLSLSEERDKSLAVLDEMRETLE------A---RLAAAEDMRKEAEEEKFEKE-ESARASLAEQEVIM 604 (747)
Q Consensus 535 ILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLE------a---RLAaAeeEr~AAEeeKieKE-esArk~L~EQEalM 604 (747)
......++|-.+|..|..+|.+.+.-+.+.-+.-+ . +++..++..=.+|-+|+..- ..-.+.+..|+.||
T Consensus 198 ~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~DDI~~~ll~~~~~~~~~~e~lF~~eL~kf~p~~~~l~~~~~~Q~~ll 277 (356)
T cd09237 198 KQIKQLEELLEDLNLIKEERQRVLKDLKQKIHNDDISDILILNSKSKSEIEKQLFPEELEKFKPLQNRLEATIFKQSSLI 277 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhcccccchHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 22455688888899999999887666644322211 1 11111222222333333322 12234566777777
Q ss_pred HHHHHHHHHH
Q 004517 605 EKVVQESKLL 614 (747)
Q Consensus 605 ~kVvEESrkL 614 (747)
..|...=+++
T Consensus 278 ~el~~~~~~f 287 (356)
T cd09237 278 NELKIELDKL 287 (356)
T ss_pred HHHHHHHHHH
Confidence 7776654444
No 106
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.60 E-value=2e+02 Score=29.08 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004517 535 ILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAED 577 (747)
Q Consensus 535 ILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAee 577 (747)
.+.....+||..|..|.++-++.-.-.++-...|+.+++.+..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 132 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS 132 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544443333333444444444444333
No 107
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=58.59 E-value=1.3e+02 Score=37.19 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=44.8
Q ss_pred cchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHH---HH-----HHH-HHHHHHHHHhHHHHHHH
Q 004517 525 HAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLA---AA-----EDM-RKEAEEEKFEKEESARA 595 (747)
Q Consensus 525 hAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLA---aA-----eeE-r~AAEeeKieKEesArk 595 (747)
|.+..-.=|.++-.|.+||+..|.+.+-|+-+.-..+ -=|..+++|.- .. -++ +.-|+++..+.| +
T Consensus 1076 q~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~-kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e----~ 1150 (1189)
T KOG1265|consen 1076 QTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVI-KDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQE----Q 1150 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 3444555566777777777777777666655531111 11112222211 11 111 112222222222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 596 SLAEQEVIMEKVVQESKLLQQQAEE 620 (747)
Q Consensus 596 ~L~EQEalM~kVvEESrkLqqEAEE 620 (747)
+-+.|-..++++.++.+.|+.|++.
T Consensus 1151 L~k~~~~~leql~e~~kal~~e~~~ 1175 (1189)
T KOG1265|consen 1151 LVKKHLEVLEQLAEEEKALDAEAEQ 1175 (1189)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455666777888888888887753
No 108
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.33 E-value=3.7e+02 Score=31.67 Aligned_cols=25 Identities=36% Similarity=0.765 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhcCcccccccchhhhhhh
Q 004517 616 QQAEENSKLREFLMDRGRVVDSLQGEISVICQ 647 (747)
Q Consensus 616 qEAEENsKLREFLMDRG~IVDsLQGEISVIce 647 (747)
.|-++|.||+--++| |-|=|.|.|.
T Consensus 297 ~e~~~r~kL~N~i~e-------LkGnIRV~CR 321 (670)
T KOG0239|consen 297 KEKEERRKLHNEILE-------LKGNIRVFCR 321 (670)
T ss_pred HHHHHHHHHHHHHHH-------hhcCceEEEE
Confidence 555788888766665 4556666663
No 109
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=57.80 E-value=1.7e+02 Score=27.47 Aligned_cols=15 Identities=0% Similarity=0.341 Sum_probs=7.1
Q ss_pred cCcccccccchhhhh
Q 004517 631 RGRVVDSLQGEISVI 645 (747)
Q Consensus 631 RG~IVDsLQGEISVI 645 (747)
+-+....|+.+|.-+
T Consensus 117 k~~a~~~l~~~i~~l 131 (164)
T PRK14471 117 KNAAMAEIKNQVANL 131 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555443
No 110
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=57.79 E-value=1.6e+02 Score=27.93 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 004517 558 LAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESAR-ASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVD 636 (747)
Q Consensus 558 LaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesAr-k~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVD 636 (747)
+.-.++.+...+.+++.+++....|+++..+--+.|+ .+-.+.+.+++...++..++-++|+.... -++-+.+.
T Consensus 56 l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie-----~e~~~a~~ 130 (173)
T PRK13460 56 INKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE-----LAKGKALS 130 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 3444555555566666666666555555444333333 34455666777777777777766665443 34455666
Q ss_pred cccchhhhhhhhH
Q 004517 637 SLQGEISVICQDV 649 (747)
Q Consensus 637 sLQGEISVIceDV 649 (747)
.|+.||.-+--++
T Consensus 131 el~~ei~~lA~~~ 143 (173)
T PRK13460 131 QLQNQIVEMTITI 143 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 6777776554443
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=56.10 E-value=4.9e+02 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHhccccchhhh
Q 004517 504 IFVKMDELKQMLAHAKEANDMHAGEIY 530 (747)
Q Consensus 504 ILaKVEELKeML~~AKEANDmhAGEVy 530 (747)
++--...++++.+....-+.|..-+|-
T Consensus 753 ~FN~a~v~kkla~s~lr~~k~t~eev~ 779 (1018)
T KOG2002|consen 753 KFNLALVLKKLAESILRLEKRTLEEVL 779 (1018)
T ss_pred HhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 334455566666666666666665554
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.34 E-value=1.9e+02 Score=27.32 Aligned_cols=52 Identities=37% Similarity=0.367 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEE 591 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEe 591 (747)
+-.|..+++.+|..+..|-+. +++.-++++..+..-+.......+.+...++
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~----l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 130 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQ----LQERIQELESELEKLKEDLQELRELLKSVEE 130 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445788888888888866555 6666677777777666666655544433333
No 113
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.29 E-value=5.5e+02 Score=32.75 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=103.6
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHh-ccccchhhhccchhHHHHHHHH
Q 004517 466 KKNLFK-AMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEA-NDMHAGEIYGERAILATEAREL 543 (747)
Q Consensus 466 K~~L~s-smEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEA-NDmhAGEVyGEKAILaTEArEL 543 (747)
+..+.. ..++...-++++|.+..+-++.-.. .+.+.++|++=++.++.. -+++ ..-.=..-+.+++
T Consensus 378 ~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~-------~~~k~kKleke~ek~~~~~~e~e-----~~pe~~~~~i~~~ 445 (1293)
T KOG0996|consen 378 RAKELKNKFESLKKKFQDLEREDVKREEKLKR-------LTSKIKKLEKEIEKARRKKSELE-----KAPEKARIEIQKC 445 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHH-----hCchhhHhHHHHH
Confidence 334444 4555555555666555544443332 345666676666666543 1111 1111223456777
Q ss_pred HHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHH
Q 004517 544 QNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEE--------------KFEKEESARASLAEQEVIMEKVVQ 609 (747)
Q Consensus 544 QSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEee--------------KieKEesArk~L~EQEalM~kVvE 609 (747)
|.++.+|...-...=..++|++..|+.+-.+-.+++.--+++ ..--|..---++..++....++-+
T Consensus 446 ~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~ 525 (1293)
T KOG0996|consen 446 QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEE 525 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777766554444433333222 222222223345556666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhc
Q 004517 610 ESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFD 657 (747)
Q Consensus 610 ESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD 657 (747)
=..+|++--+.+...+.-|-+=--.++.+-+|+.-+-.++..|++-..
T Consensus 526 lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 526 LKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 777787765666666666655556778888888888888877776554
No 114
>PTZ00121 MAEBL; Provisional
Probab=55.29 E-value=6.2e+02 Score=33.36 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=4.3
Q ss_pred HhhhHHHhhh
Q 004517 547 LLSLSEERDK 556 (747)
Q Consensus 547 L~~LSeERdk 556 (747)
|-+--+||.+
T Consensus 1625 ~kk~eeekKk 1634 (2084)
T PTZ00121 1625 LKKAEEEKKK 1634 (2084)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 115
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=54.77 E-value=78 Score=32.17 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=62.4
Q ss_pred hhccchhHH------HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HH
Q 004517 529 IYGERAILA------TEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLA--EQ 600 (747)
Q Consensus 529 VyGEKAILa------TEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~--EQ 600 (747)
+.|+..-|- .+..+..++|..|...=-.....|+-++...+.+|+.+++....... .+++.|.+... .-
T Consensus 72 LTG~~~yL~py~~a~~~~~~~~~~l~~l~~d~p~~~~~l~~l~~~i~~~l~~~~~~i~~~r~---~~~eaa~~ii~s~~G 148 (207)
T COG5278 72 LTGNDEYLEPYEEATEELDQKLEELRALTADDPELLESLDDLEPLIQWKLAEADETIPLRRD---GKLEAAVQIISSDQG 148 (207)
T ss_pred ecCCHhhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHcccc
Confidence 456666664 35666777777777665567777888888899999999887776543 33445555444 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004517 601 EVIMEKVVQESKLLQQQAEEN 621 (747)
Q Consensus 601 EalM~kVvEESrkLqqEAEEN 621 (747)
-.+|+++.+.+++++.+..++
T Consensus 149 k~lm~~ir~~l~~i~~~e~~~ 169 (207)
T COG5278 149 KVLMDAIRQYLQEIEEEENER 169 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 678899998888887665443
No 116
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=54.70 E-value=1.4e+02 Score=34.95 Aligned_cols=26 Identities=23% Similarity=0.075 Sum_probs=17.5
Q ss_pred cccccccccCCCCCCcccccccccCCCC
Q 004517 355 LVPSSVQEHTSNVPESGFQLEVGSSLPS 382 (747)
Q Consensus 355 ~v~~~vq~~~~n~~~~~~q~e~~s~~~~ 382 (747)
..++-=|++..|.|+ ||+++.|+-|.
T Consensus 14 ~~~~id~epn~~fpd--l~a~~as~~~~ 39 (591)
T KOG2412|consen 14 DGISIDPEPNWNFPD--LVAEIASVEKK 39 (591)
T ss_pred ccccCCCCCCCCchh--HHHHhhhhhhh
Confidence 344445666777777 89999777553
No 117
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.36 E-value=2.4e+02 Score=28.35 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHh
Q 004517 466 KKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEA 521 (747)
Q Consensus 466 K~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEA 521 (747)
+..+-.-+..++..+.++-..-...+.....+-..-.++-.+.++...+...+...
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~e 104 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEE 104 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555444444444444444444455556666665555555444
No 118
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=53.45 E-value=3.8e+02 Score=30.34 Aligned_cols=15 Identities=47% Similarity=0.543 Sum_probs=5.8
Q ss_pred chhHHHHHHHHHHHH
Q 004517 533 RAILATEARELQNRL 547 (747)
Q Consensus 533 KAILaTEArELQSRL 547 (747)
|.-+..|.++.+.||
T Consensus 64 R~Ele~el~~~e~rL 78 (514)
T TIGR03319 64 RAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333434433334343
No 119
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=53.41 E-value=84 Score=32.54 Aligned_cols=52 Identities=25% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 561 LDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQ 616 (747)
Q Consensus 561 IDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqq 616 (747)
+||+|+.|..=...-+.-+.+|.+|...+|+....++ .++.++.+|=-+.+.
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~----~Ll~~a~~ERDEAr~ 54 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLK----DLLKKAYQERDEARE 54 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 7999999987666666666778888888777766554 477777777554443
No 120
>PLN03086 PRLI-interacting factor K; Provisional
Probab=53.39 E-value=73 Score=36.77 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCccc
Q 004517 571 RLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLL---QQQAEENSKLREFLMDRGRVV 635 (747)
Q Consensus 571 RLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkL---qqEAEENsKLREFLMDRG~IV 635 (747)
+|.+-+.+|++..+.|+++|..|+..-+.|-..+++ +|.+|+| +.++++-..+.|.|.-.|-|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 77 (567)
T PLN03086 11 KLEREQRERKQRAKLKLERERKAKEEAAKQREAIEA-AQRSRRLDAIEAQIKADQQMQESLQAGRGIV 77 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 344555566666667777777776666666555554 5778888 334444556667775444444
No 121
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=53.30 E-value=2e+02 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhh
Q 004517 597 LAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQD 648 (747)
Q Consensus 597 L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceD 648 (747)
-++.+.+++...++..++.++|+..... ++-+...-|+.+|.-+--+
T Consensus 88 ~~~~~~~l~~A~~ea~~~~~~a~~~I~~-----ek~~a~~~L~~~i~~la~~ 134 (164)
T PRK14473 88 RAQEAEIIAQARREAEKIKEEARAQAEQ-----ERQRMLSELKSQIADLVTL 134 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665544432 2344555566666554433
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.93 E-value=4.6e+02 Score=31.25 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=61.7
Q ss_pred ccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004517 531 GERAILATEARELQNRLLSLSEERDKSLAVLDEMRET---LEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKV 607 (747)
Q Consensus 531 GEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~T---LEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kV 607 (747)
.|-...-++...|..++..|.+|-..--..|+||+.+ |+++|+.+..+.. .+..+..-.+++-.+-+.|=-++
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHH
Confidence 3345677889999999999999988888999999976 5566666655444 44444444454445555555555
Q ss_pred HHHHHH---HHHHHHHHHHHHHHH
Q 004517 608 VQESKL---LQQQAEENSKLREFL 628 (747)
Q Consensus 608 vEESrk---LqqEAEENsKLREFL 628 (747)
.++.++ |+.+-.++-|+|...
T Consensus 491 ~e~~~~ve~L~~~l~~l~k~~~lE 514 (652)
T COG2433 491 EEKKKRVEELERKLAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555443 555556666666544
No 123
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=52.42 E-value=5.1e+02 Score=31.47 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 004517 538 TEARELQNRLLSLSEERDKSLAVLDEMRETLEA 570 (747)
Q Consensus 538 TEArELQSRL~~LSeERdkaLaIIDEMr~TLEa 570 (747)
.+...|+.++..+.+.+..+-..+.+++..|+.
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~ 809 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQ 809 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777656655
No 124
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=51.91 E-value=1.8e+02 Score=26.21 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Q 004517 560 VLDEMRETLEARLAAAEDMRKEAEEEKFEKEESA-RASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSL 638 (747)
Q Consensus 560 IIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesA-rk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsL 638 (747)
-.++.+...+.+++.+++....|.++..+--+.| ..+-++.+.+++..-++..++..+++.... -++-.....|
T Consensus 47 ~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~-----~e~~~a~~~l 121 (140)
T PRK07353 47 EAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIE-----QQKQAALAQL 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3444555555555555555554444433322222 334555666666666666666666654432 3344445555
Q ss_pred cchhhhhhhh
Q 004517 639 QGEISVICQD 648 (747)
Q Consensus 639 QGEISVIceD 648 (747)
+.++.-+.-+
T Consensus 122 ~~~v~~la~~ 131 (140)
T PRK07353 122 EQQVDALSRQ 131 (140)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 125
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.89 E-value=3e+02 Score=28.64 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004517 604 MEKVVQESKLLQQQAEENSKLREFLMDR 631 (747)
Q Consensus 604 M~kVvEESrkLqqEAEENsKLREFLMDR 631 (747)
+....-+-..|+.|++-+.++-+-++.|
T Consensus 273 l~~~~~~~~~L~re~~~a~~~y~~~l~r 300 (362)
T TIGR01010 273 LNEQTADYQRLVLQNELAQQQLKAALTS 300 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667777777777766665543
No 126
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=51.73 E-value=5e+02 Score=31.18 Aligned_cols=200 Identities=18% Similarity=0.194 Sum_probs=101.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcchhHHHhHHHHHHHHHH-HHHhccccchhhhcc
Q 004517 458 MIEDAKYNKKNLFKAMESVMNMMREVEIQERAAK----EAKAAAVRGGLDIFVKMDELKQMLAH-AKEANDMHAGEIYGE 532 (747)
Q Consensus 458 ~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAk----qAK~EAs~aG~DILaKVEELKeML~~-AKEANDmhAGEVyGE 532 (747)
.+.+++..=+.|++++..++++|++-+..=..++ ..+..++.+-..+=.+..++..++.. +.+.++|-...= .-
T Consensus 259 ~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~-~~ 337 (698)
T KOG0978|consen 259 LFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSK-KL 337 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3777888889999999999999998332111111 01111111111111134444444433 333455533321 44
Q ss_pred chhHHHHHHHHHHHHhhhHHHhhhHH---HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH--HhHHHH
Q 004517 533 RAILATEARELQNRLLSLSEERDKSL---AVLDEMRETLEARLAA---------------AEDMRKEAEEEK--FEKEES 592 (747)
Q Consensus 533 KAILaTEArELQSRL~~LSeERdkaL---aIIDEMr~TLEaRLAa---------------AeeEr~AAEeeK--ieKEes 592 (747)
.+-+...+++++.++...+.|-.+.. .+-+||..+++.|++. |..|.....++. +.+++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~ 417 (698)
T KOG0978|consen 338 RSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEER 417 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778899999998888877744 4445666655555542 222222222222 222222
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhccCcc
Q 004517 593 AR---ASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVP 661 (747)
Q Consensus 593 Ar---k~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~rlp 661 (747)
+. ..+..-+.-...+...+..|+.-.+++.-|..-+--=|+=++-+|-.+. .=+.+|.++-|..+-
T Consensus 418 ~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~---kL~~el~ekdd~nfk 486 (698)
T KOG0978|consen 418 SEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQ---KLLQELREKDDKNFK 486 (698)
T ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHH
Confidence 11 1222223333456677777777766666444433334444444443332 334455556666554
No 127
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=51.68 E-value=1.7e+02 Score=27.87 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARA---SLAEQEVIMEKVVQESK 612 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk---~L~EQEalM~kVvEESr 612 (747)
.-+|.+.||+|-.+|-..=.++=-+=.+|-+.|..| |+-..+|.|..-+....--.- +-.|++.+|.+|.--=|
T Consensus 7 ~~~~l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eR---A~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FK 83 (107)
T PRK15365 7 AFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAER---AESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFK 83 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHH
Confidence 346999999999999877777666666666666655 444444444433333222222 25788999999984444
Q ss_pred HHH
Q 004517 613 LLQ 615 (747)
Q Consensus 613 kLq 615 (747)
.|+
T Consensus 84 QLE 86 (107)
T PRK15365 84 QLE 86 (107)
T ss_pred HHH
Confidence 443
No 128
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=51.65 E-value=2.7e+02 Score=30.05 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHH
Q 004517 488 RAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVL 561 (747)
Q Consensus 488 ekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaII 561 (747)
.+++||+++|..--..|=.-.++|++|..---.+|--.+.+=..| +-....+|++++.+|..+=.++-.++
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~---q~~~i~~l~~~i~~l~~~i~~y~~~~ 111 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAA---QKRAIEDLQKKIDSLKDQIKNYQQQL 111 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655444454556777777654433332222221111 22344566677766666555444443
No 129
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=51.55 E-value=1e+02 Score=35.53 Aligned_cols=56 Identities=30% Similarity=0.272 Sum_probs=41.7
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004517 541 RELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVI 603 (747)
Q Consensus 541 rELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEal 603 (747)
+|+++...+||=- +-==++||+.|+..++-.|..||+.-..+=+.++++|..-.-+
T Consensus 191 kEvE~~F~~lsL~-------f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~l 246 (538)
T PF05781_consen 191 KEVEAEFLRLSLG-------FKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPL 246 (538)
T ss_pred HHHHHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677777776622 1222689999999999999999999888888888887654333
No 130
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=51.34 E-value=5.7e+02 Score=31.73 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=28.4
Q ss_pred CCChhhhhcccccccccCCCCCCCcccCCCCcceeeecCC
Q 004517 132 SVSLDKALNASAVSQSYDPNDSSGLLYGNPESEEVILLGK 171 (747)
Q Consensus 132 ~~~~d~a~~~s~~~~~yd~nd~~~~~y~n~esee~i~l~~ 171 (747)
|+.+-+-|.-+...+|---+-|--..|.|++++..||-..
T Consensus 256 s~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr 295 (1259)
T KOG0163|consen 256 SPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNR 295 (1259)
T ss_pred CHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccc
Confidence 5667777766666666556667777888888888887543
No 131
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.27 E-value=2.7e+02 Score=27.91 Aligned_cols=44 Identities=30% Similarity=0.380 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 539 EARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAE 583 (747)
Q Consensus 539 EArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAE 583 (747)
.++-||+||.+|=.-++....++++++ .|+.++.....+....|
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k-~le~~~~~~~~~~~~~e 130 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERK-KLEKKIEEKEAELKELE 130 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHhhhhHH
Confidence 356799999988877777777777665 45666655533333333
No 132
>PRK00106 hypothetical protein; Provisional
Probab=51.15 E-value=4.4e+02 Score=30.39 Aligned_cols=8 Identities=13% Similarity=0.667 Sum_probs=3.7
Q ss_pred CCcchhhh
Q 004517 678 SGSSMKSV 685 (747)
Q Consensus 678 SgSS~kS~ 685 (747)
-|=.+|++
T Consensus 244 eGrNir~~ 251 (535)
T PRK00106 244 EGRNIRTL 251 (535)
T ss_pred CcchHHHH
Confidence 34444444
No 133
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=51.08 E-value=1.1e+02 Score=33.15 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 004517 556 KSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVV 635 (747)
Q Consensus 556 kaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IV 635 (747)
.+|.-||+....|+.++..-.+++..+..+....-..|+..|.+-...|..+.++-..++..|++--.
T Consensus 18 ~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~------------ 85 (383)
T PF04100_consen 18 QSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQ------------ 85 (383)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45777888888888888888888877776666555566666766666667777777777777765432
Q ss_pred ccccchhhhhhhhHHHHH
Q 004517 636 DSLQGEISVICQDVRLLK 653 (747)
Q Consensus 636 DsLQGEISVIceDV~~LK 653 (747)
-|.-||.||++|=
T Consensus 86 -----~V~~it~dIk~LD 98 (383)
T PF04100_consen 86 -----MVQEITRDIKQLD 98 (383)
T ss_pred -----HHHHHHHHHHHHH
Confidence 3567888888873
No 134
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.66 E-value=3.3e+02 Score=28.73 Aligned_cols=26 Identities=23% Similarity=0.343 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004517 606 KVVQESKLLQQQAEENSKLREFLMDR 631 (747)
Q Consensus 606 kVvEESrkLqqEAEENsKLREFLMDR 631 (747)
....+-..|+.+.+-+.++-++|+.|
T Consensus 339 ~~~~~~~~L~r~~~~~~~~y~~ll~r 364 (444)
T TIGR03017 339 RQRDEMSVLQRDVENAQRAYDAAMQR 364 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445668888888888888888775
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=50.61 E-value=2.5e+02 Score=27.40 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 004517 537 ATEARELQNRLLSLSEERDKSLAVLDEMRETLE 569 (747)
Q Consensus 537 aTEArELQSRL~~LSeERdkaLaIIDEMr~TLE 569 (747)
..+..+++.|+..|..+..+.-..|++.|..|+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 136
>PRK12705 hypothetical protein; Provisional
Probab=50.52 E-value=4.4e+02 Score=30.21 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 004517 609 QESKLLQQQAEEN 621 (747)
Q Consensus 609 EESrkLqqEAEEN 621 (747)
.--|+.+.||.++
T Consensus 161 ~~i~~~e~~~~~~ 173 (508)
T PRK12705 161 QRVKKIEEEADLE 173 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 137
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=50.47 E-value=2.2e+02 Score=28.44 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 561 LDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASL-AEQEVIMEKVVQESKLLQQQAEENS 622 (747)
Q Consensus 561 IDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L-~EQEalM~kVvEESrkLqqEAEENs 622 (747)
.++++...+..++..++....|+.+-.+--+.||+-. ++.+.++.++.++..++.++|+..+
T Consensus 96 Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 96 AARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444444444332 3355666666666666666666554
No 138
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=50.31 E-value=1.3e+02 Score=37.00 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLE 569 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLE 569 (747)
+.+|...|+.+|..+..+|..+-..+.++...++
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELV 180 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 6677777777776555555555544444443333
No 139
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.42 E-value=4.3e+02 Score=29.54 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=35.9
Q ss_pred hhHHHhHHHHHHHHHHHHHh-ccccchhhhccchhHHHHHHHH----HHHHhhhHHHhhhHHHHHHHHHHHHHHHH
Q 004517 502 LDIFVKMDELKQMLAHAKEA-NDMHAGEIYGERAILATEAREL----QNRLLSLSEERDKSLAVLDEMRETLEARL 572 (747)
Q Consensus 502 ~DILaKVEELKeML~~AKEA-NDmhAGEVyGEKAILaTEArEL----QSRL~~LSeERdkaLaIIDEMr~TLEaRL 572 (747)
.+.|...+++++.+..|-+. ++-+.+.-.+--..|..=.+.| ..+|..+.+.-..+..-|+|+...|...+
T Consensus 218 ~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~ 293 (563)
T TIGR00634 218 QQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYL 293 (563)
T ss_pred HHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887654 2211000000011222222232 33555566666666666777666666533
No 140
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=48.32 E-value=3.8e+02 Score=28.86 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=8.3
Q ss_pred HHhhhHHHhhhHHHHHHHHH
Q 004517 546 RLLSLSEERDKSLAVLDEMR 565 (747)
Q Consensus 546 RL~~LSeERdkaLaIIDEMr 565 (747)
||..+-..+++|..-+.+..
T Consensus 84 r~~~~~~i~~~~~~q~~~l~ 103 (332)
T TIGR01541 84 RLDARLQIDRTFRKQQRDLN 103 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 141
>PRK11281 hypothetical protein; Provisional
Probab=48.09 E-value=6.5e+02 Score=31.49 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccccch
Q 004517 611 SKLLQQQAEENSKLREFLMDRGRVVDSLQGE 641 (747)
Q Consensus 611 SrkLqqEAEENsKLREFLMDRG~IVDsLQGE 641 (747)
.-.+++|++.|.+|-+.|..-=+=.+.|.-+
T Consensus 277 ~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 277 NPLVAQELEINLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3348999999999999998766545544443
No 142
>PF13514 AAA_27: AAA domain
Probab=48.01 E-value=5.9e+02 Score=30.92 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHHhc
Q 004517 505 FVKMDELKQMLAHAKEAN 522 (747)
Q Consensus 505 LaKVEELKeML~~AKEAN 522 (747)
...+..|+..+..+++.-
T Consensus 783 ~~~~~~L~~~l~~a~~~~ 800 (1111)
T PF13514_consen 783 EEALEALRARLEEAREAQ 800 (1111)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 377888888888887763
No 143
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=47.73 E-value=4.9 Score=37.17 Aligned_cols=73 Identities=14% Similarity=0.286 Sum_probs=2.0
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHh-ccccchhhhc
Q 004517 453 DLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEA-NDMHAGEIYG 531 (747)
Q Consensus 453 esLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEA-NDmhAGEVyG 531 (747)
..+.+.|.++..+-..|-..+..+...++.|+.+....-. |=.+++++|+++++||.+ |...-|.-|.
T Consensus 48 ~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~-----------ls~nI~~IrelI~qAR~~An~IkV~m~F~ 116 (138)
T PF06009_consen 48 SDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSN-----------LSRNISRIRELIAQARDAANRIKVSMKFN 116 (138)
T ss_dssp ---------------------------------------------------------------------------B----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh-----------HHHHHHHHHHHHHHHHHHHhheeeeeEEC
Confidence 4667777777777777777777777777777655432111 778999999999999987 9988888888
Q ss_pred cchhH
Q 004517 532 ERAIL 536 (747)
Q Consensus 532 EKAIL 536 (747)
=+|++
T Consensus 117 g~s~v 121 (138)
T PF06009_consen 117 GNSGV 121 (138)
T ss_dssp ---EE
T ss_pred CCcee
Confidence 77764
No 144
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.49 E-value=2.6e+02 Score=26.74 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHhhhHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 545 NRLLSLSEERDKSL----AVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESA-RASLAEQEVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 545 SRL~~LSeERdkaL----aIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesA-rk~L~EQEalM~kVvEESrkLqqEAE 619 (747)
..+.+.=++|.... .-.++.++..+.+++.+++....|+++..+--+.| ..+-.+.+.+++...++..++-++|+
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~ 120 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQ 120 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 24455555555555555555555544433332222 23344556666777777766666655
Q ss_pred HHHHHHHHHhhcCcccccccchhhhhhhhH
Q 004517 620 ENSKLREFLMDRGRVVDSLQGEISVICQDV 649 (747)
Q Consensus 620 ENsKLREFLMDRG~IVDsLQGEISVIceDV 649 (747)
.... -.+-..+..|+.|+.-+--++
T Consensus 121 ~~I~-----~ek~~a~~~l~~ei~~lA~~~ 145 (173)
T PRK13453 121 SEIN-----SQKERAIADINNQVSELSVLI 145 (173)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4332 233444555666665544443
No 145
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=47.48 E-value=1.7e+02 Score=32.49 Aligned_cols=15 Identities=47% Similarity=0.508 Sum_probs=8.3
Q ss_pred HHHHhhhHHHhhhHH
Q 004517 544 QNRLLSLSEERDKSL 558 (747)
Q Consensus 544 QSRL~~LSeERdkaL 558 (747)
|-||.+|..||-+++
T Consensus 100 qErlkQle~er~~a~ 114 (387)
T COG3064 100 QERLKQLEKERLKAQ 114 (387)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566665555544
No 146
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=47.42 E-value=55 Score=37.54 Aligned_cols=142 Identities=21% Similarity=0.184 Sum_probs=65.1
Q ss_pred cchhHHHhHHHHHHHHHHHHHhccc--------------------cchhhhccchhHHHHHHHHHHHHhhhHHHhhh---
Q 004517 500 GGLDIFVKMDELKQMLAHAKEANDM--------------------HAGEIYGERAILATEARELQNRLLSLSEERDK--- 556 (747)
Q Consensus 500 aG~DILaKVEELKeML~~AKEANDm--------------------hAGEVyGEKAILaTEArELQSRL~~LSeERdk--- 556 (747)
.|.==..+.+.+++++.++-..|-. +...+|.-+ ....+++.=|..+..++-.
T Consensus 147 ~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~----~~~~kv~~il~~~~f~~~~~p~ 222 (759)
T PF01496_consen 147 AGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGK----ELEEKVKKILRSFGFERYDLPE 222 (759)
T ss_dssp -----HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEG----GGHHHHHHHHHTTT--B----G
T ss_pred EEEEehhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEch----hhHHHHHHHhhccCceecCCCC
Confidence 4544456888999999887666322 111222111 2234444444444444422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 004517 557 SLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVD 636 (747)
Q Consensus 557 aLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVD 636 (747)
.-...+|+...|+.||...+++.+..+++..+.-+..+.. +.... ..|..+.+--.-+..|..+.+ +
T Consensus 223 ~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~-------l~~~~---~~l~~~~~~~~~~~~~~~~~~---~ 289 (759)
T PF01496_consen 223 DEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEE-------LEAWY---EYLRKEKEIYEALNKFASTET---N 289 (759)
T ss_dssp GGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHTT------
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHhhccccc---c
Confidence 1224567788888888877777776665544221111111 11111 223333333333445555554 3
Q ss_pred cccchhhhhhhhHHHHHHHhcc
Q 004517 637 SLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 637 sLQGEISVIceDV~~LKervD~ 658 (747)
.+-+|-=+=-+|+..+++.+++
T Consensus 290 ~~~~~GWvP~~~~~~l~~~l~~ 311 (759)
T PF01496_consen 290 VFILEGWVPEKDVEELKKALEE 311 (759)
T ss_dssp SEEEEEEE-TTTHHHHHHT--S
T ss_pred EEEEEEeccHHHHHHHHHHHHh
Confidence 3444444556899999998876
No 147
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=47.02 E-value=2.2e+02 Score=34.89 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhHHHhh
Q 004517 540 ARELQNRLLSLSEERD 555 (747)
Q Consensus 540 ArELQSRL~~LSeERd 555 (747)
++.+|.-|....+++.
T Consensus 216 v~~~qe~La~~qe~eE 231 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEE 231 (1064)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666665555544
No 148
>PRK03918 chromosome segregation protein; Provisional
Probab=46.81 E-value=5e+02 Score=29.78 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=23.1
Q ss_pred ccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 004517 449 ICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREV 483 (747)
Q Consensus 449 ~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEV 483 (747)
.++++.++.+...++...+.+-..++.+...+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 188 (880)
T PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRT 188 (880)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777776666666665555433
No 149
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=46.77 E-value=66 Score=32.17 Aligned_cols=60 Identities=28% Similarity=0.265 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHH
Q 004517 478 NMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQN 545 (747)
Q Consensus 478 ~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQS 545 (747)
-|++||+.-.++-..++++-.-+|....-|--|||+-++.-.|.|+ ||+.|++...+|=.
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknk--------eK~~Lv~~L~eLv~ 140 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNK--------EKAQLVTRLMELVS 140 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999988888886 79999999888743
No 150
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.69 E-value=4.3e+02 Score=28.94 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHH--HHHHHHhHH--HHHHHHHHHHHHHHHHHHHHH
Q 004517 540 ARELQNRLLSLSEERDKSLAVLDE----MRETLEARLAAAEDMRKE--AEEEKFEKE--ESARASLAEQEVIMEKVVQES 611 (747)
Q Consensus 540 ArELQSRL~~LSeERdkaLaIIDE----Mr~TLEaRLAaAeeEr~A--AEeeKieKE--esArk~L~EQEalM~kVvEES 611 (747)
...|+.||.+|..|+-..=-.+.. |-..|+.+|...+.+..+ .+.+++.+| ..=..+=+|||.|+++.--..
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm 187 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQM 187 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999866555543 235778888777654432 222344443 344556689999988776443
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004517 612 KLLQQQAEENSKLREFLM 629 (747)
Q Consensus 612 rkLqqEAEENsKLREFLM 629 (747)
-+ =+.|+-.|++-|-
T Consensus 188 ~~---l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 188 DK---LEAEKRRLQEKLE 202 (310)
T ss_pred HH---HHHHHHHHHHHHc
Confidence 33 3456677877764
No 151
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.17 E-value=8.6e+02 Score=32.31 Aligned_cols=117 Identities=23% Similarity=0.268 Sum_probs=76.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcchhHHHhHHHHH------HHHHHHHHhccccchhhhc
Q 004517 461 DAKYNKKNLFKAMESVMNMMREVEIQ---ERAAKEAKAAAVRGGLDIFVKMDELK------QMLAHAKEANDMHAGEIYG 531 (747)
Q Consensus 461 daK~nK~~L~ssmEsi~~MmrEVELq---EekAkqAK~EAs~aG~DILaKVEELK------eML~~AKEANDmhAGEVyG 531 (747)
-++..+..|-.-++++..++.+.... +.+.-++-.-.+..+-+|+-+|++|+ .||..-.++|--.-.|++.
T Consensus 1171 ~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~ 1250 (1822)
T KOG4674|consen 1171 TLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRD 1250 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554432 22222333455678889999999998 5677777777666788888
Q ss_pred cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004517 532 ERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAED 577 (747)
Q Consensus 532 EKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAee 577 (747)
+=.-|-.+.-.||++|..|.++=....+-+.=|+..-++-..+.+.
T Consensus 1251 ~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~ 1296 (1822)
T KOG4674|consen 1251 KIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQD 1296 (1822)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899998888887776666665555554444444433
No 152
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=45.74 E-value=6.6e+02 Score=30.87 Aligned_cols=102 Identities=26% Similarity=0.336 Sum_probs=59.8
Q ss_pred hhhhccchhHHHHHHHHHHHHhh-hHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004517 527 GEIYGERAILATEARELQNRLLS-LSEER-------DKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLA 598 (747)
Q Consensus 527 GEVyGEKAILaTEArELQSRL~~-LSeER-------dkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~ 598 (747)
+.+.+|.|-|.--.|=|-.+|.. =+.+| |-=|+-|+=+--+||..| +..|+
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql---------------------~es~k 448 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQL---------------------QESLK 448 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHH---------------------HHHHH
Confidence 44556666655444444444332 11111 223455566666665544 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCcccccccchhhhhhhhHHHH
Q 004517 599 EQEVIMEKVVQESKLLQQQAEENSKLREFLMD-------RGRVVDSLQGEISVICQDVRLL 652 (747)
Q Consensus 599 EQEalM~kVvEESrkLqqEAEENsKLREFLMD-------RG~IVDsLQGEISVIceDV~~L 652 (747)
.||.+-.+.-+=.|-.+.+++||-+|++.+.| .+++-|+ ||.-|--+|+..
T Consensus 449 ~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~---e~~rik~ev~ea 506 (861)
T PF15254_consen 449 SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDI---ETTRIKIEVEEA 506 (861)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHH
Confidence 67777777777778888999999999987544 4555554 666666666543
No 153
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=45.72 E-value=3.2e+02 Score=27.46 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=9.2
Q ss_pred HHhhhHHHHHHHHHHHHH
Q 004517 552 EERDKSLAVLDEMRETLE 569 (747)
Q Consensus 552 eERdkaLaIIDEMr~TLE 569 (747)
+-|.++-.|+++.+..-+
T Consensus 68 ~a~~ea~~i~~~A~~eA~ 85 (246)
T TIGR03321 68 ELDQQREVLLTKAKEEAQ 85 (246)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455556665554444
No 154
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=45.44 E-value=3.5e+02 Score=27.65 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=67.8
Q ss_pred cchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 500 GGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMR 579 (747)
Q Consensus 500 aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr 579 (747)
+=.|++.+.|.+|+++..-|. | -..|...+.+.+.||.+. ..+| +-|+..-+..|..|.+++
T Consensus 91 sfsdl~~ryek~K~vi~~~k~-N----------EE~Lkk~~~ey~~~l~~~---eqry----~aLK~hAeekL~~ANeei 152 (207)
T PF05010_consen 91 SFSDLHKRYEKQKEVIEGYKK-N----------EETLKKCIEEYEERLKKE---EQRY----QALKAHAEEKLEKANEEI 152 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-h----------HHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHH
Confidence 345899999999999988776 2 235667778888887743 2333 345677778888999988
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 580 KEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSK 623 (747)
Q Consensus 580 ~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsK 623 (747)
......--.+-..-++.|...|.=+.+.-+ .|+|...||.-
T Consensus 153 ~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~---~LeQK~kEn~E 193 (207)
T PF05010_consen 153 AQVRSKHQAELLALQASLKKEEMKVQSLEE---SLEQKTKENEE 193 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 776655444444445556665555555543 46666666653
No 155
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=45.03 E-value=5.3e+02 Score=29.60 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=12.9
Q ss_pred chhhHHHHHHHHhhhhhHHHHH
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKA 472 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ss 472 (747)
+|=.||++--+..-.|..|=..
T Consensus 72 gVfqlddi~~qlr~~rtel~~a 93 (499)
T COG4372 72 GVFQLDDIRPQLRALRTELGTA 93 (499)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4556677766666666555443
No 156
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=45.00 E-value=2.8e+02 Score=26.33 Aligned_cols=109 Identities=25% Similarity=0.301 Sum_probs=57.6
Q ss_pred HhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 506 VKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEE 585 (747)
Q Consensus 506 aKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEee 585 (747)
++.++.+.+-.++.+.|-.+-...| +-|.+..+.|+.....|+..+...-..+.+....+ .. -.+..+
T Consensus 5 ~e~~~~~~~~a~~~e~e~~~~~~~~---~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~----~~-----l~~~~~ 72 (136)
T PF04871_consen 5 SELEEEKQLAAKILELETKLKSQAE---SSLEQENKRLEAEEKELKEAEQAAEAELEELASEV----KE-----LEAEKE 72 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----HHHHHH
Confidence 3455666666666666544422222 23555555555555555554433322222222211 11 112233
Q ss_pred HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 004517 586 KFEKEESA-RASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVV 635 (747)
Q Consensus 586 KieKEesA-rk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IV 635 (747)
++.+| | ..+-.||+.||--+.. +-+-|.|+|.-|-+-|.=|
T Consensus 73 kl~~E--~~~~~q~EldDLL~ll~D-------le~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 73 KLKEE--ARKEAQSELDDLLVLLGD-------LEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHHH--HHHhhhhhHHHHHHHHHh-------HHHHHHHHHHHHHHcCCCc
Confidence 33333 3 3466789988865443 4455789999999999888
No 157
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.99 E-value=5.3e+02 Score=29.54 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARL 572 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRL 572 (747)
+.++.++|+.||.........-+..+++.++.|...+
T Consensus 79 ~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 79 LEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444555544444444
No 158
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=44.30 E-value=5.1e+02 Score=29.14 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=12.5
Q ss_pred cCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 631 RGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 631 RG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
.|..|-.-..|-..++..+....+..+.
T Consensus 454 ~~~~Vtls~eEy~~L~~ka~e~ee~a~k 481 (522)
T PF05701_consen 454 SSSKVTLSLEEYESLSKKAEEAEELAEK 481 (522)
T ss_pred CCCCeeecHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444544444444444333333
No 159
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=44.10 E-value=4.1e+02 Score=28.01 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=7.2
Q ss_pred HHHHHHHhhhHHHhhh
Q 004517 541 RELQNRLLSLSEERDK 556 (747)
Q Consensus 541 rELQSRL~~LSeERdk 556 (747)
+.|+.+|..+..++..
T Consensus 257 ~~l~~~l~~le~~l~~ 272 (444)
T TIGR03017 257 QNLKTDIARAESKLAE 272 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 160
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=44.03 E-value=3.7e+02 Score=27.52 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 004517 485 IQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLD 562 (747)
Q Consensus 485 LqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIID 562 (747)
+.++++++|..+|.. +=.+..++.+|...-+...-|. -.||.-|..++++++....+|.+++.+--.-..
T Consensus 37 ~Leek~k~aeeea~~----Le~k~~eaee~~~rL~~~~~~~----~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~ 106 (246)
T PF00769_consen 37 ELEEKLKQAEEEAEE----LEQKRQEAEEEKQRLEEEAEMQ----EEEKEQLEQELREAEAEIARLEEESERKEEEAE 106 (246)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444431 3334445555555444444443 346777777777777777777776665544333
No 161
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=43.92 E-value=1.5e+02 Score=32.16 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhc
Q 004517 452 IDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYG 531 (747)
Q Consensus 452 IesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyG 531 (747)
+..|++-.+..+.-|+. +.+-+||.|+.--.-+.||. ..+..+|.|-+-|+||-|-|.|-..|.|
T Consensus 93 ~s~Leddlsqt~aikeq-------l~kyiReLEQaNDdLErakR-------ati~sleDfeqrLnqAIErnAfLESELd- 157 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQ-------LRKYIRELEQANDDLERAKR-------ATIYSLEDFEQRLNQAIERNAFLESELD- 157 (333)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccHHHHhhh-------hhhhhHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 35566666666665543 45666777665544444443 3456789999999999999999888876
Q ss_pred cchhHHHHHHHH
Q 004517 532 ERAILATEAREL 543 (747)
Q Consensus 532 EKAILaTEArEL 543 (747)
||-+|.-++|-|
T Consensus 158 Eke~llesvqRL 169 (333)
T KOG1853|consen 158 EKEVLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHH
Confidence 566666655543
No 162
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=43.61 E-value=2e+02 Score=26.93 Aligned_cols=21 Identities=5% Similarity=0.172 Sum_probs=13.5
Q ss_pred hhcCcccccccchhhhhhhhH
Q 004517 629 MDRGRVVDSLQGEISVICQDV 649 (747)
Q Consensus 629 MDRG~IVDsLQGEISVIceDV 649 (747)
-+++.....|+++|.-+..-|
T Consensus 114 ~e~~~~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 114 NQKQELKEQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 345666677777776665544
No 163
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=42.82 E-value=1.1e+02 Score=33.24 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 004517 534 AILATEARELQNRLLSLSEERDKSLAVLDE 563 (747)
Q Consensus 534 AILaTEArELQSRL~~LSeERdkaLaIIDE 563 (747)
..|-.+-|+|+.++.+|..|||+.-.-|.+
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888877666544
No 164
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=42.63 E-value=4e+02 Score=27.44 Aligned_cols=8 Identities=50% Similarity=0.534 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004517 570 ARLAAAED 577 (747)
Q Consensus 570 aRLAaAee 577 (747)
.|..+|+.
T Consensus 211 ~k~e~~e~ 218 (297)
T PF02841_consen 211 AKAEAAEK 218 (297)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 165
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=42.49 E-value=1.9e+02 Score=28.17 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004517 601 EVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 601 EalM~kVvEESrkLqqEAE 619 (747)
+.+++....+..++.++|+
T Consensus 88 ~ea~~eA~~ea~r~~~~A~ 106 (154)
T PRK06568 88 QEKTKEIEEFLEHKKSDAI 106 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544
No 166
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=42.27 E-value=3.5e+02 Score=26.70 Aligned_cols=119 Identities=29% Similarity=0.379 Sum_probs=74.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccc--hhhhcc
Q 004517 455 LEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHA--GEIYGE 532 (747)
Q Consensus 455 LE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhA--GEVyGE 532 (747)
|+++|....++|+.+|.-.|..+. |.+.....=..-|.+. ..++..|+.|......|+--=--++ =.-|.|
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~---E~~~l~~EL~evk~~v----~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE 76 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQ---EYERLRKELEEVKEEV----SEVIEEVDKLEKRERQARQRLAEVSRNFDRYSE 76 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCH
Confidence 688999999999999988887654 3333333333333332 2467777777777666653210000 012455
Q ss_pred chhHH--HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 533 RAILA--TEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEE 584 (747)
Q Consensus 533 KAILa--TEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEe 584 (747)
.-|=. .+|++||-+|+-+.++ .+ -|.+-|..||.||..-+.-...||.
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~-E~---qLr~rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLRER-EK---QLRERRDELERRLRNLEETIERAEN 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 4788999988876544 22 3567888999999888777666654
No 167
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=42.13 E-value=2.7e+02 Score=29.21 Aligned_cols=88 Identities=24% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 538 TEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQ 617 (747)
Q Consensus 538 TEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqE 617 (747)
+..-+|++||..+..+-.+ |..++-+|+.++..-.+-.+-.=+++..-.....-+.---.-.|..|.+.+|.+-..
T Consensus 118 ~~~~~l~srl~~~~~~~e~----l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~E~~r~~~~~ 193 (217)
T COG1777 118 EGISELISRLLEINREIEE----LSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVEETSRRTVLK 193 (217)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHHHHHhccchh
Confidence 4457888999888865444 345555666665544443333333333322211111111112267788888877666
Q ss_pred HHHHHHHHHHHhhcC
Q 004517 618 AEENSKLREFLMDRG 632 (747)
Q Consensus 618 AEENsKLREFLMDRG 632 (747)
.+++ ++-|+++|
T Consensus 194 i~~v---le~l~e~g 205 (217)
T COG1777 194 IEEV---LEILAEKG 205 (217)
T ss_pred HHHH---HHHHhhcc
Confidence 5554 57899999
No 168
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.06 E-value=2.7e+02 Score=30.76 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhh
Q 004517 597 LAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEIS 643 (747)
Q Consensus 597 L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEIS 643 (747)
-++.+.+++++.+|..++.++++..... +|-+.+.-|+.||.
T Consensus 81 ~~~~~~~~~~A~~ea~~i~~~a~~~Ie~-----ek~~a~~elr~ei~ 122 (445)
T PRK13428 81 ERIAEQLRAQADAEAERIKVQGARQVQL-----LRAQLTRQLRLELG 122 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 3445556666666666666666655433 23334444444443
No 169
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.88 E-value=4.8e+02 Score=28.12 Aligned_cols=66 Identities=24% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004517 562 DEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQE---VIMEKVVQESKLLQQQAEENSKLREFLMDR 631 (747)
Q Consensus 562 DEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQE---alM~kVvEESrkLqqEAEENsKLREFLMDR 631 (747)
+.+++.|..+++.++.+.++.+.+.- .-++.+++.+ .-+...-.+-+.|+.+++-+.++-+.|+.|
T Consensus 309 ~~~~~~l~~~l~~~~~~~~~l~~~~~----~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 309 NPVYQQLQIELAEAEAEIASLEARVA----ELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665555443321 1222222222 234455567778888888888888777765
No 170
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=40.87 E-value=2.8e+02 Score=25.22 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhh
Q 004517 597 LAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQD 648 (747)
Q Consensus 597 L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceD 648 (747)
....+.+++.+.++..++-++|+.-... .+-+....|..++.-+--+
T Consensus 75 ~~~~~~~~~~a~~e~~~~~~~a~~~i~~-----e~~~a~~~l~~~~~~lA~~ 121 (147)
T TIGR01144 75 SEILEEAKAEAREEREKIKAQARAEIEA-----EKEQAREELRKQVADLSVL 121 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666544322 2334444455555444333
No 171
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=40.85 E-value=6.5e+02 Score=29.42 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHH
Q 004517 490 AKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEA 540 (747)
Q Consensus 490 AkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEA 540 (747)
++....++.-.-.|...+|-.|.+=|.-.+. +|.+|+--|+.+.+++.
T Consensus 188 ~r~~ld~Etllr~d~~n~~q~Lleel~f~~~---~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 188 ARKQLDDETLLRVDLQNRVQTLLEELAFLKR---IHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---ccHHHHHHHHHHHhhcc
Confidence 3334444555556666666666666666554 46678888888877776
No 172
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.55 E-value=3.5e+02 Score=27.97 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=41.4
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 542 ELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEEN 621 (747)
Q Consensus 542 ELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEEN 621 (747)
++..-...|-.||.+.+..|..|++.... -+..++.|+.++.+.++.++.+. +|-..|..+. |
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~----lE~iIkqa~~er~~~~~~i~r~~-----------eey~~Lk~~i--n 98 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINT----LENIIKQAESERNKRQEKIQRLY-----------EEYKPLKDEI--N 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH--H
Confidence 33444455667888887777777664332 33344444444444444444333 2333444444 3
Q ss_pred HHHHHH-HhhcCcccccccchh
Q 004517 622 SKLREF-LMDRGRVVDSLQGEI 642 (747)
Q Consensus 622 sKLREF-LMDRG~IVDsLQGEI 642 (747)
..++++ =+++ ...|+.|.
T Consensus 99 ~~R~e~lgl~~---Lp~l~eE~ 117 (230)
T PF10146_consen 99 ELRKEYLGLEP---LPSLEEEE 117 (230)
T ss_pred HHHHHHcCCCC---CCcccccc
Confidence 346663 2333 56667666
No 173
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.41 E-value=4.2e+02 Score=27.06 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=15.0
Q ss_pred hhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 004517 529 IYGERAILATEARELQNRLLSLSEERDKSLAVLDE 563 (747)
Q Consensus 529 VyGEKAILaTEArELQSRL~~LSeERdkaLaIIDE 563 (747)
.|.++.+-..+.-..+..+..+..+...+-.-|.+
T Consensus 187 L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~ 221 (423)
T TIGR01843 187 LKEKGLVSRLELLELERERAEAQGELGRLEAELEV 221 (423)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444444444333333
No 174
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.16 E-value=4.6e+02 Score=27.50 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=12.6
Q ss_pred chhhhhhhhHHHHHHHhcc
Q 004517 640 GEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 640 GEISVIceDV~~LKervD~ 658 (747)
+||.-+...+.+|+....-
T Consensus 276 ~Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHHHCc
Confidence 4777777777777766543
No 175
>PRK02107 glutamate--cysteine ligase; Provisional
Probab=39.65 E-value=2e+02 Score=33.03 Aligned_cols=118 Identities=20% Similarity=0.108 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhh------hHHHHHHHHHH-------HHHHHHHHHHHH
Q 004517 512 KQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERD------KSLAVLDEMRE-------TLEARLAAAEDM 578 (747)
Q Consensus 512 KeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERd------kaLaIIDEMr~-------TLEaRLAaAeeE 578 (747)
+..+...+.-|-+.+-+-.|++..|...|+++-.+|..+.+.=| .+..+|++|+. |.=+||.+...+
T Consensus 377 ~~v~~~gr~p~l~l~~~~~~~~~~l~~~a~~il~~l~~~a~~ld~~~~~~~y~~al~~~~~ki~~P~lTpSaqll~~~~~ 456 (523)
T PRK02107 377 NRVILEGRKPGLELGIGRDGEQVPLQAWGKELFADLKRVAELLDSINGGDAYQKACAELRAKFDDPELTPSARVLASMIE 456 (523)
T ss_pred HHHHHcCCCCCCeecccCCCCeecHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHhcCcccCHHHHHHHHHHH
Confidence 33444556666666655678888889999999999988877544 46788888888 444677655543
Q ss_pred HH------HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 004517 579 RK------EAEEEKFEKE-ESARASLAEQEVIMEKVVQESKLLQQQAEENS--KLREFLM 629 (747)
Q Consensus 579 r~------AAEeeKieKE-esArk~L~EQEalM~kVvEESrkLqqEAEENs--KLREFLM 629 (747)
.. .-+..+.-++ ..++..-....+-+++.++.|..=|++.|.+- ..-+||-
T Consensus 457 ~g~~~~~f~l~lA~~~~~~~~~~~~~~~~~~~~~~~a~~S~~~q~~iE~~d~~~f~~fl~ 516 (523)
T PRK02107 457 NGQSIGGFGLALAEAYREYLRAEPLSALSEEDFEAEAEASLARQAELEAADTLSFDAFLA 516 (523)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 22 2222222222 22444445677788888888887777777654 4555553
No 176
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.54 E-value=3.3e+02 Score=26.97 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhH----HHHHHH
Q 004517 488 RAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKS----LAVLDE 563 (747)
Q Consensus 488 ekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdka----LaIIDE 563 (747)
.+.+.......+.-.++-.+++++++-+..++....-- .||.-+-.+.++|+.++.+|..|=..+ -..|++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 004517 564 MRETLEARLAAAE 576 (747)
Q Consensus 564 Mr~TLEaRLAaAe 576 (747)
|+..++.=.++|+
T Consensus 140 ~~~~~~~~~~~an 152 (188)
T PF03962_consen 140 LKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHH
No 177
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.34 E-value=9.7e+02 Score=30.96 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=8.7
Q ss_pred cccccchhhHHHHHHHH
Q 004517 446 SGQICRIDLLEEMIEDA 462 (747)
Q Consensus 446 Ssq~~sIesLE~~Isda 462 (747)
+.+.-+.+..-.+|++|
T Consensus 272 ad~~r~~eERR~liEEA 288 (1486)
T PRK04863 272 ADYMRHANERRVHLEEA 288 (1486)
T ss_pred HHHhhCHHHHHHHHHHH
Confidence 33444555555555554
No 178
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=39.33 E-value=2.4e+02 Score=26.39 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=47.6
Q ss_pred HHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 004517 504 IFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLE 569 (747)
Q Consensus 504 ILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLE 569 (747)
.++.+..+-..+... -|. .+.++|--..-|-.|++.|+.....|..+-+.-+..++.....|-
T Consensus 23 a~~s~~~l~~~l~d~--ln~-~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LK 85 (121)
T PF06320_consen 23 AIASAQALTNALVDH--LNS-RVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALK 85 (121)
T ss_pred HHHHHHHHHHHHHHH--HHH-hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444432 243 377899999999999999999999999999999998888877764
No 179
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=39.15 E-value=3e+02 Score=24.97 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEAR 571 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaR 571 (747)
+.++.+.|+.+|.++..+|-..-..-.|.-.+++..
T Consensus 8 ~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 8 LQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999988888877766666665555543
No 180
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=39.06 E-value=52 Score=27.81 Aligned_cols=28 Identities=39% Similarity=0.433 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004517 567 TLEARLAAAEDMRKEAEEEKFEKEESAR 594 (747)
Q Consensus 567 TLEaRLAaAeeEr~AAEeeKieKEesAr 594 (747)
|||.||++-|....+||++-..-|..++
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665555444444433
No 181
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=38.69 E-value=2.6e+02 Score=24.09 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 556 KSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKL 624 (747)
Q Consensus 556 kaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKL 624 (747)
.-...|++|+...+.++...+...........+ ...+......-..+|+.|......++.+.+.-.+-
T Consensus 67 ~q~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~-~a~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~l~~ 134 (138)
T PF05227_consen 67 EQQERLDQLEELIDQWRELLEPQIALRKSGGME-AARALVNSGEGKQLMDQIRQLLEQIQAEEQRLLKQ 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-GG-GHH-HHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445568888888888886666665554442222 33333334456678888888888887766655443
No 182
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.68 E-value=3.8e+02 Score=26.06 Aligned_cols=117 Identities=29% Similarity=0.367 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 504 IFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE---ERDKSLAVLDEMRETLEARLAAAEDMRK 580 (747)
Q Consensus 504 ILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSe---ERdkaLaIIDEMr~TLEaRLAaAeeEr~ 580 (747)
-.+.+..+...+...++.+ .++|-.++-|+.-...+...|..+-. ++...+..+......|+.|+ .
T Consensus 65 ~~~~~~~le~~~~~l~~EL----ael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~-------~ 133 (194)
T PF08614_consen 65 SSAQISSLEQKLAKLQEEL----AELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI-------K 133 (194)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHH-------H
T ss_pred ccccccccccccccccccc----cccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3344555555555555543 24566666665555555555444432 23333444444444444443 3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004517 581 EAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDR 631 (747)
Q Consensus 581 AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDR 631 (747)
.-+.+..+|++.-..+-.|-.++=-..-.=-.++++=-+||..|-+-+|++
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433332222211223333334566666666654
No 183
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=38.57 E-value=2.9e+02 Score=28.27 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=34.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 004517 552 EERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKE-ESARASLAEQEVIMEKVVQESKL 613 (747)
Q Consensus 552 eERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKE-esArk~L~EQEalM~kVvEESrk 613 (747)
+||+| |=.|+|.++=.+|++... ..++.....++- +.+++-|++=+.++....+|-|.
T Consensus 169 ~ER~R---IARdLHDsv~q~L~~i~m-~~~~~~~~~~~~~e~~~~~l~~i~~~~~e~l~evR~ 227 (365)
T COG4585 169 EERNR---IARDLHDSVGQSLTAISM-LLALLLLLADEDAEKAQEELKEIEKLLREALQEVRA 227 (365)
T ss_pred HHHHH---HHHHHhhHHhhHHHHHHH-HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77877 457999999999988887 333232222222 44555555555555555555554
No 184
>PHA03332 membrane glycoprotein; Provisional
Probab=38.50 E-value=6e+02 Score=32.34 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=65.9
Q ss_pred HHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004517 496 AAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAA 575 (747)
Q Consensus 496 EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaA 575 (747)
-|......-|...-..++++.++.+++.. |..-.+++..|+..+++---+-=.-|.-+-.+|++||++-
T Consensus 867 vAL~~A~QAL~va~~~~~~llqnaaaia~-----------mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~av 935 (1328)
T PHA03332 867 AALNAATQALAVATLYVNQLLQATAATAE-----------MASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAV 935 (1328)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHh
Confidence 34444455556666677777777777654 6777889999999999988888888888999999999887
Q ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHH
Q 004517 576 EDMRKEAEEE---KFEKEESARASLAEQEV 602 (747)
Q Consensus 576 eeEr~AAEee---KieKEesArk~L~EQEa 602 (747)
.-..-.-|.+ .+..=..+-..|++|-+
T Consensus 936 NgRIs~Led~VN~r~~~v~~~intLA~ql~ 965 (1328)
T PHA03332 936 NGRVSDLEDQVNLRFLAVATNFNTLATQLK 965 (1328)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6554433332 33334455556666633
No 185
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=38.39 E-value=4.6e+02 Score=26.91 Aligned_cols=34 Identities=41% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004517 563 EMRETLEARLAAAEDMRKEAEEEKFEKEESARAS 596 (747)
Q Consensus 563 EMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~ 596 (747)
+=|..|+.+++.++.+...-++++-.|++-|..+
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~l 108 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEEL 108 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777777776666666666655544
No 186
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.21 E-value=4.3e+02 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=20.1
Q ss_pred HHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 625 REFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 625 REFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
|++.+.++.+. .+|.++..+...|..|+.++.+
T Consensus 157 rql~~e~kK~~-~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 157 RQLASEKKKHK-EAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555543 3567777777777777766543
No 187
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.21 E-value=1.1e+03 Score=31.36 Aligned_cols=189 Identities=23% Similarity=0.259 Sum_probs=90.0
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcchhHHHh-----HHHHHHHHHHHHHh
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVM----NMMREVEIQERAAKEAKAAAVRGGLDIFVK-----MDELKQMLAHAKEA 521 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~----~MmrEVELqEekAkqAK~EAs~aG~DILaK-----VEELKeML~~AKEA 521 (747)
.|..|.+-|+..+.+...|=..+..+. ..+.++++.+....+=| +--.+|+-+ -++|+++...+.
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK----~R~q~L~~k~k~~d~~~~~kL~~ei~-- 1317 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWK----QRNQDLLEKYKDSDKNDYEKLKSEIS-- 1317 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCHHHHHHHHHHHH--
Confidence 346677777777777666665555443 33444444444444433 334677777 566666554211
Q ss_pred ccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004517 522 NDMHAGEIYGERAILATEARELQNRLLSLSEERDKSL-----------AVLDEMRETLEARLAAAEDMRKEAEEEKFEKE 590 (747)
Q Consensus 522 NDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaL-----------aIIDEMr~TLEaRLAaAeeEr~AAEeeKieKE 590 (747)
-.=+|..-.-+...+|-.+|-++.+.+.+=+ ..|.++ ..+..||+++..+..+++.+.--+
T Consensus 1318 ------~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql-~~~~~rL~~~~~e~~~q~~el~~~- 1389 (1822)
T KOG4674|consen 1318 ------RLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQL-EDLKTRLAAALSEKNAQELELSDK- 1389 (1822)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1112222222333333333333332222222 223332 245677888877777763322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHh
Q 004517 591 ESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKF 656 (747)
Q Consensus 591 esArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKerv 656 (747)
..| .=..|+.+..+.-....++. =++|+.+|++-|=+--++-=.+|-++.-|-..-.-+++..
T Consensus 1390 ~~~--~~~~~e~t~rk~e~~~~k~~-~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~ 1452 (1822)
T KOG4674|consen 1390 KKA--HELMQEDTSRKLEKLKEKLE-LSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEE 1452 (1822)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHh
Confidence 111 11122222222222222222 2267777777777765666667777666655444444433
No 188
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.14 E-value=7.5e+02 Score=29.34 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=14.2
Q ss_pred cccccccCCCCcccceeeh
Q 004517 232 PTLSAHANGLGATDIDISI 250 (747)
Q Consensus 232 ~tls~~~~~~g~t~i~~~~ 250 (747)
.|+-...||+|=|+|.+.|
T Consensus 27 i~lI~G~nGsGKSSIldAI 45 (908)
T COG0419 27 IFLIVGPNGAGKSSILDAI 45 (908)
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 3555567899999998765
No 189
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.72 E-value=3e+02 Score=32.59 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=36.2
Q ss_pred hhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004517 528 EIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARAS 596 (747)
Q Consensus 528 EVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~ 596 (747)
+|=-.++.|+-|-...-..++.|-.+=..+-.+|+||+..|+.| ..=+.|.+|=++++.
T Consensus 300 di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~----------sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 300 DIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR----------SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------ccHHHHHHHHHHHHH
Confidence 34444555555555555556666666667777888888888888 333445555555444
No 190
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=37.62 E-value=1.6e+02 Score=25.68 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004517 599 EQEVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 599 EQEalM~kVvEESrkLqqEAE 619 (747)
+.+.++..+.++..++-.+++
T Consensus 81 ~~~~~~~ea~~~~~~~~~~a~ 101 (132)
T PF00430_consen 81 EKEEILAEAEKEAERIIEQAE 101 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 191
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.40 E-value=5.8e+02 Score=27.87 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=61.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHH
Q 004517 464 YNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEAREL 543 (747)
Q Consensus 464 ~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArEL 543 (747)
..|+.|+.-+|.+..-.+..|.-=.+.--.|+|+..----+=-||.-|+..|.+.--..+. -+. -=--|-.|-|=|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~---riv-DIDaLi~ENRyL 201 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDEN---RIV-DIDALIMENRYL 201 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---Ccc-cHHHHHHHHHHH
Confidence 5566666666666666666555444444455555444444556777777777666543222 111 112256677777
Q ss_pred HHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 004517 544 QNRLLSLSEERDKSLAVLDEMRETLEAR 571 (747)
Q Consensus 544 QSRL~~LSeERdkaLaIIDEMr~TLEaR 571 (747)
+.||.++-+|++=+-..|.--+..|++|
T Consensus 202 ~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 202 KERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777777666666643
No 192
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.93 E-value=7.4e+02 Score=28.91 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004517 598 AEQEVIMEKVVQESKLLQQQA 618 (747)
Q Consensus 598 ~EQEalM~kVvEESrkLqqEA 618 (747)
..|..-+.+|..+-|.||+|-
T Consensus 501 ~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 501 RKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666554
No 193
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.19 E-value=5.4e+02 Score=27.08 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=11.6
Q ss_pred Ccccccccchhhhhh
Q 004517 632 GRVVDSLQGEISVIC 646 (747)
Q Consensus 632 G~IVDsLQGEISVIc 646 (747)
|..|=-++|++=+=|
T Consensus 189 g~gvvpl~g~~C~GC 203 (239)
T COG1579 189 GVGVVPLEGRVCGGC 203 (239)
T ss_pred CceEEeecCCcccCC
Confidence 788889999875544
No 194
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.76 E-value=3.5e+02 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=32.6
Q ss_pred ccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHH
Q 004517 522 NDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAV 560 (747)
Q Consensus 522 NDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaI 560 (747)
|..+.-..+.+..-|..|.+.+|.++.+|..|+..+=.-
T Consensus 41 ~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~ 79 (247)
T COG3879 41 TSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENK 79 (247)
T ss_pred hccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888999999999999999999999888754333
No 195
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.72 E-value=4.1e+02 Score=25.53 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 558 LAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSK 623 (747)
Q Consensus 558 LaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsK 623 (747)
..+|++=+..++.-|..|+..+..|++..-+-++.=.++..+-..|++...++..+..++.....+
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~ 118 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLE 118 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 196
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=35.70 E-value=4.6e+02 Score=26.15 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 004517 511 LKQMLAHAKE 520 (747)
Q Consensus 511 LKeML~~AKE 520 (747)
+++.+..|.+
T Consensus 84 I~~~L~~Ae~ 93 (205)
T PRK06231 84 IEAEINQANE 93 (205)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 197
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.97 E-value=2.4e+02 Score=29.01 Aligned_cols=66 Identities=27% Similarity=0.447 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHhhhHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004517 534 AILATEARELQNRLLSLSEERDKSLAVLD-------EMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEK 606 (747)
Q Consensus 534 AILaTEArELQSRL~~LSeERdkaLaIID-------EMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~k 606 (747)
.-|.-++..|..||..|-.-=|+.|-.|+ |++.|++..|-+ +-|.+--.+|..|+++.++
T Consensus 110 ~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 176 (189)
T TIGR02132 110 PALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIKT-------------QGEQLQAQLLEKQEALAAK 176 (189)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999888888888876 777777765543 4445555678888888887
Q ss_pred HHHHHH
Q 004517 607 VVQESK 612 (747)
Q Consensus 607 VvEESr 612 (747)
...+.|
T Consensus 177 ~~~~~~ 182 (189)
T TIGR02132 177 LKAEAK 182 (189)
T ss_pred hhhHHH
Confidence 665544
No 198
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.95 E-value=6.1e+02 Score=27.32 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=15.3
Q ss_pred HHHHHHHHHHH-HhhhHHHhh-hHHHHHHHH
Q 004517 536 LATEARELQNR-LLSLSEERD-KSLAVLDEM 564 (747)
Q Consensus 536 LaTEArELQSR-L~~LSeERd-kaLaIIDEM 564 (747)
|..-.++||+- +.+|+..+- ++.++|..|
T Consensus 131 Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DL 161 (269)
T PF05278_consen 131 LCDIIQELQSTPLKELSESDLKEMIATLKDL 161 (269)
T ss_pred HHHHHHHHhcCcHhhhhHHHHHHHHHHHHHH
Confidence 44555666653 566666553 344444444
No 199
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=34.77 E-value=2.8e+02 Score=30.95 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004517 560 VLDEMRETLEARLAAAED 577 (747)
Q Consensus 560 IIDEMr~TLEaRLAaAee 577 (747)
+.+++|+..+.|+..+++
T Consensus 447 ~~~~l~~~~~~~~~~~~~ 464 (525)
T TIGR00831 447 VARELLPELDARIEELRA 464 (525)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666666666665543
No 200
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.64 E-value=3.7e+02 Score=24.79 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=17.1
Q ss_pred hHHHhHHHHHHHHHHHHHhccccchhh
Q 004517 503 DIFVKMDELKQMLAHAKEANDMHAGEI 529 (747)
Q Consensus 503 DILaKVEELKeML~~AKEANDmhAGEV 529 (747)
.+-.-.++++.+...|++|.+...-||
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El 51 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677777778888766655444
No 201
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=2.9e+02 Score=31.45 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=59.6
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 541 RELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEE 620 (747)
Q Consensus 541 rELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEE 620 (747)
-..|..++.+-.+|...+.++|-.|+|+|.|+|.---. .+-+.|-..-.-.|++|=.-+.+.--|-.+||.++-.
T Consensus 86 gkvk~~~s~~~~~K~dn~e~~d~l~~t~e~~~a~vv~~-----~~al~ki~~~~~~Lk~~~~~l~q~~~et~~lqE~~~~ 160 (465)
T KOG0827|consen 86 GKVKYSVSPGWPYKSDNLELQDLLGHTAEDTIAIVVGK-----IGALKKIVVYSGDLKEDFQDLKQFDPETLELQENPSD 160 (465)
T ss_pred cchhhhcCcCCccccccHHHHHHHhhhHHHHHHHHHHH-----HHHhhhHHHhHHHHHHHHHHHHhhCHHHHHHHHhHHH
Confidence 34567778888888888999999999999998753222 2222222222223333222222221122222211110
Q ss_pred ------------------HHHHHHHHhhcCcccccccchhhhhhhhHHHHHHH
Q 004517 621 ------------------NSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEK 655 (747)
Q Consensus 621 ------------------NsKLREFLMDRG~IVDsLQGEISVIceDV~~LKer 655 (747)
=..+-|-.|+- ++.|+|+|-.+|-|.+.+++-.+
T Consensus 161 L~~~~~~~~~~~lls~~~~~~~~e~~~t~-~~~~slv~sl~I~~~slK~~y~k 212 (465)
T KOG0827|consen 161 LLISHEYIFGAALLSIKCFFQTAEHWMTS-QPTSSLVGSLSICFESLKQNYDK 212 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CchHHHHhhhHhhHHHHHHHHHH
Confidence 00111222333 57899999999999998887443
No 202
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=34.38 E-value=5.2e+02 Score=26.40 Aligned_cols=19 Identities=5% Similarity=0.270 Sum_probs=8.8
Q ss_pred ccchhhhhhhhHHHHHHHh
Q 004517 638 LQGEISVICQDVRLLKEKF 656 (747)
Q Consensus 638 LQGEISVIceDV~~LKerv 656 (747)
++.++.-+-..+..++.+.
T Consensus 251 ~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 251 AQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 203
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=34.01 E-value=1.1e+03 Score=29.83 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=26.5
Q ss_pred hhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHH
Q 004517 502 LDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE 552 (747)
Q Consensus 502 ~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSe 552 (747)
..++.-|.+|+.-.....+=|..+-- -=-+.+++++|+--|.=|.+.-+
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~--r~~~~~~~~~a~~c~~ll~~a~~ 824 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK--RISKTVIAQEAQLCKDLLKQALE 824 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666555543221 12245677777766665555443
No 204
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=33.79 E-value=4.3e+02 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004517 592 SARASLAEQEVIMEKVVQESKL 613 (747)
Q Consensus 592 sArk~L~EQEalM~kVvEESrk 613 (747)
.-++.|..++.++..+.++.++
T Consensus 71 ~r~~~l~ar~el~~~v~~~a~~ 92 (198)
T PRK03963 71 VRRKRLAVQEELISEVLEAVRE 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677778888877777664
No 205
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.71 E-value=7.2e+02 Score=27.86 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 538 TEARELQNRLLSLSEERDKSLAVLDEM---RETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLL 614 (747)
Q Consensus 538 TEArELQSRL~~LSeERdkaLaIIDEM---r~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkL 614 (747)
.+..+++.||..+..-..+|=.-++++ +..++.+|+..+.....-++-+.+.++...++..--+.|...=.+-.++|
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l 380 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERL 380 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888887777665554333333 33444455543332222222222222222222222222333333444445
Q ss_pred HHHHHHHHHHHHHHhhcCcc
Q 004517 615 QQQAEENSKLREFLMDRGRV 634 (747)
Q Consensus 615 qqEAEENsKLREFLMDRG~I 634 (747)
++.. +..|+.+-|.+++.
T Consensus 381 ~~~v--~~~l~~L~m~~~~f 398 (563)
T TIGR00634 381 AKRV--EQELKALAMEKAEF 398 (563)
T ss_pred HHHH--HHHHHhCCCCCcEE
Confidence 4444 34567777887774
No 206
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.34 E-value=1.1e+03 Score=29.93 Aligned_cols=207 Identities=20% Similarity=0.272 Sum_probs=113.5
Q ss_pred ccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccc
Q 004517 445 RSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDM 524 (747)
Q Consensus 445 ~Ssq~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDm 524 (747)
++++.-.++.++.+-++.+..+..+-....++..-+.+|.-.|+.-+.|+.+=-+ ++.+|.+-+..++-.++.
T Consensus 733 ~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~-------rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 733 QNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRER-------RLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh-------HHHHHHHHHHHHHHHHHH
Confidence 3444555789999999999999999998899998888888888877766654332 445555555544443333
Q ss_pred cchhh---hccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh-----H--HH
Q 004517 525 HAGEI---YGERAILATEARELQNRLLSLSEERDKSLAVLDEMRE---TLEARLAAAEDMRKEAEEEKFE-----K--EE 591 (747)
Q Consensus 525 hAGEV---yGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~---TLEaRLAaAeeEr~AAEeeKie-----K--Ee 591 (747)
.+-+. +-|.--|.-|..+|+.-+..+..+.-.-..-|+.+.. .|.+.++.++.+.+++.++.-. + ..
T Consensus 806 ~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt 885 (1174)
T KOG0933|consen 806 SSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT 885 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 22221 1122223344444444444333333333333333322 3445566666666555443221 1 11
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh--------------hcCcccccccchhhhhhh
Q 004517 592 SARASLAEQEVIME----------KVVQESKLLQQQAEENSKLREFLM--------------DRGRVVDSLQGEISVICQ 647 (747)
Q Consensus 592 sArk~L~EQEalM~----------kVvEESrkLqqEAEENsKLREFLM--------------DRG~IVDsLQGEISVIce 647 (747)
.+...+.++|.... +...|-.+++.++..|.|--+-|. ..|...|-=---+..--+
T Consensus 886 ~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are 965 (1174)
T KOG0933|consen 886 EISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEARE 965 (1174)
T ss_pred HHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHH
Confidence 24444556655543 344566777888877776433332 345555554444455556
Q ss_pred hHHHHHHHhcc
Q 004517 648 DVRLLKEKFDE 658 (747)
Q Consensus 648 DV~~LKervD~ 658 (747)
.+..|+++++.
T Consensus 966 ~l~~Lq~k~~~ 976 (1174)
T KOG0933|consen 966 ELKKLQEKKEK 976 (1174)
T ss_pred HHHHhhHHHHH
Confidence 66666666653
No 207
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.06 E-value=8.5e+02 Score=28.44 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------------HHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESAR---------------ASLAEQ 600 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesAr---------------k~L~EQ 600 (747)
|.++-.-|.--|-.+--|-.+ +.-|+||.+.|++-=-.++.-...+++-+-+-|..++ ++...|
T Consensus 323 ll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq 401 (521)
T KOG1937|consen 323 LLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQ 401 (521)
T ss_pred HHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHH
Confidence 333333333334333333334 6778888888775333333222222222222222222 345567
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004517 601 EVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 601 EalM~kVvEESrkLqqEAE 619 (747)
+.=|-+|..|-|.||+|..
T Consensus 402 ~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 402 EQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888899999999998753
No 208
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=32.88 E-value=2.4e+02 Score=27.48 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 004517 597 LAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDS 637 (747)
Q Consensus 597 L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDs 637 (747)
..+=+...+++..|.++|+++|++.-+-||-++.++|--|.
T Consensus 75 i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~ 115 (157)
T PF14235_consen 75 IARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDL 115 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHH
Confidence 33444556777888999999999999999999999998774
No 209
>PRK09039 hypothetical protein; Validated
Probab=32.78 E-value=6.5e+02 Score=27.00 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=9.5
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHH
Q 004517 542 ELQNRLLSLSEERDKSLAVLDEM 564 (747)
Q Consensus 542 ELQSRL~~LSeERdkaLaIIDEM 564 (747)
++|.|+..|.++=........|.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~ 135 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARA 135 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444443333333333333
No 210
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.50 E-value=7.6 Score=34.15 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAED 577 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAee 577 (747)
|..|..+|+.++..|..+ +.-+.++..+|+..|..|+.
T Consensus 37 l~~e~~~L~~~~~~l~~~----l~~~~~~~~~l~~~l~~aq~ 74 (131)
T PF05103_consen 37 LQRENAELKEEIEELQAQ----LEELREEEESLQRALIQAQE 74 (131)
T ss_dssp HHHHHHHHHHHHHCCCCT------------------------
T ss_pred HHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHhhhhhhh
Confidence 445555666666555443 33345555666666655543
No 211
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.45 E-value=1.6e+02 Score=30.10 Aligned_cols=61 Identities=26% Similarity=0.254 Sum_probs=52.0
Q ss_pred hhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHH
Q 004517 502 LDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLA 573 (747)
Q Consensus 502 ~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLA 573 (747)
.+++..|-.=|+|++.-..+|.| |--+.+=+++||..-|+.--.=+-.|-||+-.|+-=+-
T Consensus 31 ~tv~~iI~aqkQml~rfektnem-----------llNc~~l~~~rl~~as~r~l~H~~tL~emk~DlD~ifr 91 (184)
T KOG3443|consen 31 RTVLEIIHAQKQMLERFEKTNEM-----------LLNCNKLSVKRLDLASERFLQHLITLTEMKLDLDVIFR 91 (184)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46777777889999999999998 66788999999999999999999999999988875443
No 212
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=31.37 E-value=4.5e+02 Score=30.11 Aligned_cols=18 Identities=33% Similarity=0.283 Sum_probs=10.4
Q ss_pred ccchhhhhhhhHHHHHHH
Q 004517 638 LQGEISVICQDVRLLKEK 655 (747)
Q Consensus 638 LQGEISVIceDV~~LKer 655 (747)
.|-|-.-|-+|...+.+.
T Consensus 326 aq~er~~iAkD~qk~~~e 343 (489)
T PF05262_consen 326 AQQERKEIAKDQQKLIEE 343 (489)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344555566676666655
No 213
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.30 E-value=7e+02 Score=26.91 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 004517 534 AILATEARELQNRLLSLSEERDKSLAVLDEMRE 566 (747)
Q Consensus 534 AILaTEArELQSRL~~LSeERdkaLaIIDEMr~ 566 (747)
..+.....+|+.+|.++..++..+-+-++-++.
T Consensus 200 ~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 200 GDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444443
No 214
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=30.92 E-value=3.6e+02 Score=23.51 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=21.7
Q ss_pred cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 004517 532 ERAILATEARELQNRLLSLSEERDKSLAVLDEMRE 566 (747)
Q Consensus 532 EKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~ 566 (747)
+=--|..+-+.|+.++..|..+||..-.-|.+...
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 33345556677777777777777776655555443
No 215
>PRK14011 prefoldin subunit alpha; Provisional
Probab=30.74 E-value=2e+02 Score=27.77 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=35.6
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEI-QERAAKEAKAAAVRGG 501 (747)
Q Consensus 451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVEL-qEekAkqAK~EAs~aG 501 (747)
-++.++.-|....++...|...++.+.+.+++++. .+.+.+++.+.|-.+|
T Consensus 89 A~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~~~ 140 (144)
T PRK14011 89 VIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQMK 140 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45677777777788888888888888888888872 2444666655554443
No 216
>PLN02939 transferase, transferring glycosyl groups
Probab=30.62 E-value=1.2e+03 Score=29.28 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHh
Q 004517 509 DELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLL 548 (747)
Q Consensus 509 EELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~ 548 (747)
+-||..+..-+|.-.. --..=.|++.|-+-.+||.+|+.
T Consensus 243 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 243 QFLKAELIEVAETEER-VFKLEKERSLLDASLRELESKFI 281 (977)
T ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555544444322 22344688999999999998874
No 217
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.59 E-value=6.8e+02 Score=26.58 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 004517 537 ATEARELQNRLLSLSEERDKSLAVLDEMRET 567 (747)
Q Consensus 537 aTEArELQSRL~~LSeERdkaLaIIDEMr~T 567 (747)
..+..+++..|..|..|..+.+.-|.++..+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e 72 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKE 72 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777776666665443
No 218
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=30.32 E-value=3.4e+02 Score=31.71 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004517 556 KSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASL 597 (747)
Q Consensus 556 kaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L 597 (747)
.-+.-..|+|.+||+.|+--+..|+. -+.++.||+.++-.|
T Consensus 535 md~lrerelreslekql~~ErklR~~-~qkr~kkEkk~k~k~ 575 (641)
T KOG3915|consen 535 MDFLRERELRESLEKQLAMERKLRAI-VQKRLKKEKKAKRKL 575 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34455689999999988876665544 344566676665433
No 219
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=30.27 E-value=3e+02 Score=26.92 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHhhhH
Q 004517 535 ILATEARELQNRLLSLS 551 (747)
Q Consensus 535 ILaTEArELQSRL~~LS 551 (747)
+...|..+|+..|....
T Consensus 60 ~r~~E~~~Lk~~lk~~k 76 (168)
T PF06102_consen 60 YREKEIKELKKQLKKTK 76 (168)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34556666666666554
No 220
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=29.98 E-value=8.8e+02 Score=27.71 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHH
Q 004517 452 IDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAH 517 (747)
Q Consensus 452 IesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~ 517 (747)
++-|+.+...-|.-.++..+.+.+.-..-+.|-+.=++-++|+..-+.-|-|+-++.|+=++-|.+
T Consensus 88 l~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~Q 153 (561)
T KOG1103|consen 88 LDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQ 153 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 578999999999988888888888777766666666677778877778899999888875555444
No 221
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=29.90 E-value=1.4e+02 Score=28.13 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 560 VLDEMRETLEARLAAAEDMRKEAEE 584 (747)
Q Consensus 560 IIDEMr~TLEaRLAaAeeEr~AAEe 584 (747)
=||||+..||.+++++++....+.+
T Consensus 88 did~~~~~l~~~~~~~~~~~~~~r~ 112 (131)
T PRK06228 88 DLGELREAVEQEFLTLDERERSVRS 112 (131)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3689999999988877766444433
No 222
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.89 E-value=1.8e+02 Score=24.70 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 591 ESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREF-LM-DRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 591 esArk~L~EQEalM~kVvEESrkLqqEAEENsKLREF-LM-DRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
+..+.+...|+.+...|-++..+|+.--+-+.---=| +. -..+ +..+..+|..|++-+..||+|++.
T Consensus 21 ~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~K-L~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 21 QQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKK-LVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888888888888888886554422110001 11 1122 345688999999999999999864
No 223
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.85 E-value=1.2e+03 Score=29.17 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004517 592 SARASLAEQEVIMEKVVQES 611 (747)
Q Consensus 592 sArk~L~EQEalM~kVvEES 611 (747)
.|...|.|+|+|=.+.++|-
T Consensus 618 e~~R~l~E~e~i~~k~~ke~ 637 (988)
T KOG2072|consen 618 EAKRILREKEAIRKKELKER 637 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666655555443
No 224
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=29.81 E-value=1.8e+02 Score=29.99 Aligned_cols=65 Identities=14% Similarity=0.397 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhH---HHhhhHHHHHHHHHHHHHHHHHHH
Q 004517 508 MDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLS---EERDKSLAVLDEMRETLEARLAAA 575 (747)
Q Consensus 508 VEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LS---eERdkaLaIIDEMr~TLEaRLAaA 575 (747)
-+|+++--.+=-|+.+...+.+| .||.+|+.-++.-..=|. +-=.++..||.+++..|+.|+..|
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~---n~le~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~~~~~~ 223 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMF---NFLENDVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQNRISTA 223 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555544444444444444444 566665544443322222 234578899999999999998643
No 225
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.26 E-value=4.4e+02 Score=27.37 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCcc--------
Q 004517 565 RETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREF--LMDRGRV-------- 634 (747)
Q Consensus 565 r~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREF--LMDRG~I-------- 634 (747)
+..|=.||-.++.|+..+=-+.-.-=+-.-.-|...=..+...++.-+||| ++|-.||++ .+|+-|-
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLq---edNqELRdLCCFLDddRqKgrklarE 94 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQ---EDNQELRDLCCFLDDDRQKGRKLARE 94 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcccchhHHHhHHHhHH
Q ss_pred --------cccccchhhhhhhhHHHHHHHhccCc
Q 004517 635 --------VDSLQGEISVICQDVRLLKEKFDERV 660 (747)
Q Consensus 635 --------VDsLQGEISVIceDV~~LKervD~rl 660 (747)
.+.++-|++.-.+.++.|..|-++-+
T Consensus 95 WQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~ 128 (195)
T PF10226_consen 95 WQRFGRYTASVMRQEVAQYQQKLKELEDKQEELI 128 (195)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 226
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=29.12 E-value=3.1e+02 Score=30.08 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=19.7
Q ss_pred cccccccchhhh----hhhhHHHHHHHhccC
Q 004517 633 RVVDSLQGEISV----ICQDVRLLKEKFDER 659 (747)
Q Consensus 633 ~IVDsLQGEISV----IceDV~~LKervD~r 659 (747)
+|-|-|-|-|-+ |-+.+..||+.++.+
T Consensus 204 RlaDHf~GKlHlGy~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 204 RLADHFGGKLHLGYVLIREKLAELKKEKAKR 234 (319)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHhHH
Confidence 566778887643 667788888888774
No 227
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.11 E-value=5.7e+02 Score=25.26 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004517 600 QEVIMEKVVQESKLLQQQAE 619 (747)
Q Consensus 600 QEalM~kVvEESrkLqqEAE 619 (747)
...++..+-|+-++.-..++
T Consensus 101 ea~L~~~~~~~~~~~~~~~~ 120 (155)
T PRK06569 101 EQDLKNSINQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444
No 228
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.67 E-value=5.1e+02 Score=24.51 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhcccc--chhhhccch
Q 004517 457 EMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMH--AGEIYGERA 534 (747)
Q Consensus 457 ~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmh--AGEVyGEKA 534 (747)
.+|+...+.=+.|=.-+.++..-+.-++.+...+.+--...+.---.+-..+.++.++-..-++-+..| +-++||||+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q ss_pred hHHHHHHHHHHHHhhhHH
Q 004517 535 ILATEARELQNRLLSLSE 552 (747)
Q Consensus 535 ILaTEArELQSRL~~LSe 552 (747)
-++.||+..+..+.+
T Consensus 96 ---E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 96 ---EEVEELRADVQDLKE 110 (120)
T ss_pred ---HHHHHHHHHHHHHHH
No 229
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.47 E-value=6.2e+02 Score=25.47 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004517 567 TLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRG 632 (747)
Q Consensus 567 TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG 632 (747)
.+...+..........++.+..|++.++ ...+...|++-.+||..||++|--+.
T Consensus 60 ~~~~~~~~~~~~~~l~~en~~L~~e~~~------------l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 60 FVSGVFESLASLFDLREENEELKKELLE------------LESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3334444444444444444444444433 23334445566778899998875433
No 230
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.35 E-value=1.2e+03 Score=28.91 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred ccccchhhHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhH------HHHHHHHHH
Q 004517 447 GQICRIDLLE---EMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKM------DELKQMLAH 517 (747)
Q Consensus 447 sq~~sIesLE---~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKV------EELKeML~~ 517 (747)
+-.|+.+.|| +.+.++|..-.+|.+.+..... ....++-.++..||-+.|--| |+++.++.
T Consensus 236 t~v~~F~DLe~A~e~V~~~K~Qi~~L~PLV~~~~r---------~e~~~~S~~~~~A~k~aL~~~~~~iK~E~~~~~v~- 305 (1104)
T COG4913 236 TAVEQFQDLEGAYEQVEDIKRQIHTLDPLVQLKNR---------REKAQQSKDHANALKKALPTVGNRIKKEEQETLVR- 305 (1104)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH---------HHHHHHhHHHHHHHHhhhhHHHHHHhHHHHHHHHH-
Confidence 4456666666 4577888888888888776432 122344455667776666433 44444443
Q ss_pred HHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 004517 518 AKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLE----ARLAAAEDMRKEAEEEKF 587 (747)
Q Consensus 518 AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLE----aRLAaAeeEr~AAEeeKi 587 (747)
-++.|+-.+.+.++.+..||+++=...--.|+.|- +|+.---.+|+-|+..|.
T Consensus 306 -----------------~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~ 362 (1104)
T COG4913 306 -----------------QFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRR 362 (1104)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 26788889999999999999999776666666554 344333334444444443
No 231
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=1e+03 Score=29.77 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=26.0
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 453 DLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEA 493 (747)
Q Consensus 453 esLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqA 493 (747)
+.+.--..+.+.--..|.+.=+++..|+.-+..++.+.+.-
T Consensus 291 ~~~~vrlae~~d~~~~LiP~ke~vl~~~~~l~q~~s~i~~~ 331 (984)
T COG4717 291 DALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKAS 331 (984)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345666666777778788877777777666655443
No 232
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=28.17 E-value=2.9e+02 Score=25.90 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=39.5
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004517 542 ELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEK 589 (747)
Q Consensus 542 ELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieK 589 (747)
+|..||..|-.+++....=|-.+|.++=++++.+-.....++.+.+++
T Consensus 37 ~L~~rv~~l~~~~e~~~v~va~lRr~~P~~i~~~~~~~~~~~~~~L~~ 84 (139)
T PF08641_consen 37 ELNERVRSLYDQLEDLTVEVAQLRRDYPRKIAEAYAKSLKAEREILEE 84 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999998877666444444444
No 233
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=28.07 E-value=3.2e+02 Score=33.69 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 004517 483 VEIQERAAKEAKAAAV 498 (747)
Q Consensus 483 VELqEekAkqAK~EAs 498 (747)
++-.|+.+++.+.+|+
T Consensus 160 keKkek~~~~~~~~~a 175 (1064)
T KOG1144|consen 160 KEKKEKEKKKEDSAAA 175 (1064)
T ss_pred hhhhhhhhhhhhhhhc
Confidence 3444444444444333
No 234
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.74 E-value=4.4e+02 Score=28.87 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCcc
Q 004517 556 KSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEE-NSKLREFLMDRGRV 634 (747)
Q Consensus 556 kaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEE-NsKLREFLMDRG~I 634 (747)
..+..+|+-|..|+.++...+.+|+..-+++-++-........+--+-+.++.++-+.|+++..+ ..+|.+.|+.=+.+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566777777777777777777777777664411110000011111244555566666655544 45666666654444
Q ss_pred c
Q 004517 635 V 635 (747)
Q Consensus 635 V 635 (747)
+
T Consensus 110 ~ 110 (418)
T TIGR00414 110 P 110 (418)
T ss_pred C
Confidence 3
No 235
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=27.66 E-value=9e+02 Score=27.07 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004517 539 EARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQ 609 (747)
Q Consensus 539 EArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvE 609 (747)
+-+.|..|+..++ .--+++....|+ +..+..+..+-..++.+-.+=...|...|...|.+.+..++
T Consensus 195 ~~~~L~~~~~A~~-~~~~~l~~~~e~----~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 195 ERQELEERPKALR-HYIEYLRESGEL----QEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 3456666666332 222233333333 34455555555666666666666688899999999888887
No 236
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.65 E-value=7.4e+02 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004517 564 MRETLEARLAAAEDMRKEAEEEK 586 (747)
Q Consensus 564 Mr~TLEaRLAaAeeEr~AAEeeK 586 (747)
+...|+..+..|++.+++.+.+.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665555555443
No 237
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.45 E-value=9.4e+02 Score=27.20 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHHHhccc
Q 004517 506 VKMDELKQMLAHAKEANDM 524 (747)
Q Consensus 506 aKVEELKeML~~AKEANDm 524 (747)
.....+.+.+.|+++.|..
T Consensus 310 k~~~~l~~~l~~~~e~~~~ 328 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKE 328 (569)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3445566666666666654
No 238
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=27.39 E-value=4.1e+02 Score=25.68 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 004517 563 EMRETLEARLAA 574 (747)
Q Consensus 563 EMr~TLEaRLAa 574 (747)
+++..++.|..+
T Consensus 153 ~i~~ai~~~~~a 164 (242)
T cd03405 153 EVSESVYRRMRA 164 (242)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 239
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.28 E-value=8.5e+02 Score=26.64 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=75.8
Q ss_pred ccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccc
Q 004517 445 RSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDM 524 (747)
Q Consensus 445 ~Ssq~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDm 524 (747)
.+...+.++.|.+=+-.....-+.|-+ ....+-.|-.--|++.++-..+-.+-=..-=.++..|.+-|+.=.|.|..
T Consensus 155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~---Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~r 231 (306)
T PF04849_consen 155 SSQKCIQLEALQEKLKSLEEENEQLRS---EASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRR 231 (306)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Confidence 345566778887766655543333333 33444445555566666666655554444556778888888888888776
Q ss_pred cchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 004517 525 HAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMR 565 (747)
Q Consensus 525 hAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr 565 (747)
+- .|=+-|.++.-.||.|+.++..|-.+-...|.++|
T Consensus 232 QQ----EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 232 QQ----EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 54 45578999999999999999999776655555554
No 240
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=8.6e+02 Score=26.64 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=11.0
Q ss_pred ccccchhhhhhhhHHHHH
Q 004517 636 DSLQGEISVICQDVRLLK 653 (747)
Q Consensus 636 DsLQGEISVIceDV~~LK 653 (747)
|...+|+..+-++|..+.
T Consensus 420 ~~~~~e~~~~~~~~~~~~ 437 (503)
T KOG2273|consen 420 DLAEKEIEKLEEKVNELE 437 (503)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666666665
No 241
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=27.06 E-value=8e+02 Score=26.27 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=40.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHH----HhHHHHHHHHHHHHHh
Q 004517 461 DAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGL--DIF----VKMDELKQMLAHAKEA 521 (747)
Q Consensus 461 daK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~--DIL----aKVEELKeML~~AKEA 521 (747)
+..+-|+.|+.+++.+-.+.+|+ -|-.+-.-|+--.++|. +|| .|=+|||+|+.+|-|-
T Consensus 5 ~~~StrerLL~~~dDlE~i~kel--ie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq 69 (272)
T KOG4552|consen 5 DERSTRERLLESADDLEHIVKEL--IETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQ 69 (272)
T ss_pred ccccHHHHHHHHhhHHHHHHHHH--HHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhH
Confidence 45567889999998888777764 34444444555555553 333 5778999999988764
No 242
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=26.87 E-value=3.6e+02 Score=22.85 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 004517 556 KSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQ-------ESKLLQQQAEENSKLRE 626 (747)
Q Consensus 556 kaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvE-------ESrkLqqEAEENsKLRE 626 (747)
+|+.-|+.+|+.-..+|.++.. ...++++..+-...|.++++ +=..+=+.++.|..||+
T Consensus 11 ~A~~~ie~ir~~~~~~l~~~~~------------~~~~~~l~~~a~~~~~~~I~~~GLtv~~fN~I~~~~q~Dp~L~~ 76 (78)
T PF13767_consen 11 RAVLEIEPIRQEYQQELQAAED------------PEEIQELQEEAQEEMVEAIEENGLTVERFNEITQAAQSDPELRQ 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCHHHHh
Confidence 4566778888888888877544 23344444444444555553 33455667777777764
No 243
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.71 E-value=5.8e+02 Score=30.17 Aligned_cols=74 Identities=24% Similarity=0.214 Sum_probs=45.1
Q ss_pred HhcchhHHHhHHHHHHHHHHHHHh--ccccchh---hhccchhHHHHHHHHHHHHhh-hHHHhhhHHHHHHHHHHHHHHH
Q 004517 498 VRGGLDIFVKMDELKQMLAHAKEA--NDMHAGE---IYGERAILATEARELQNRLLS-LSEERDKSLAVLDEMRETLEAR 571 (747)
Q Consensus 498 s~aG~DILaKVEELKeML~~AKEA--NDmhAGE---VyGEKAILaTEArELQSRL~~-LSeERdkaLaIIDEMr~TLEaR 571 (747)
..-|+|+..--..++.|+.+-+|. ||+|.+- +-.+-.=|..|-.+||.+-.+ |++---++=.-|+|||.+||..
T Consensus 422 ~~~~~d~~~~~~km~~~i~~~~~~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k 501 (588)
T KOG3612|consen 422 GGVHADPTVVEDKMKDAIIDLQESTLSDYSGSRERSLVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQK 501 (588)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 345678888889999999999998 9998763 222222234444444443322 2222333445677888877643
No 244
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.64 E-value=1.4e+03 Score=28.78 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccc------hhhhccchhHHHHHHHHHHHHhhhHHH
Q 004517 480 MREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHA------GEIYGERAILATEARELQNRLLSLSEE 553 (747)
Q Consensus 480 mrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhA------GEVyGEKAILaTEArELQSRL~~LSeE 553 (747)
..+|..|-+.+++++.+..+--..+=.++|+++.-.. ..|.|+. -..-.|.+.|.+|+..||.-|.+++..
T Consensus 447 ~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~---~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 447 YDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG---RAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQS 523 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3455555556666655444433333333333322111 1122222 124467888888888888888888877
Q ss_pred hhhHHHHHH
Q 004517 554 RDKSLAVLD 562 (747)
Q Consensus 554 RdkaLaIID 562 (747)
.++-++=|+
T Consensus 524 ~~~~~~~l~ 532 (980)
T KOG0980|consen 524 HNNQLAQLE 532 (980)
T ss_pred HHHHHHHHH
Confidence 776655443
No 245
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=26.63 E-value=9.2e+02 Score=26.83 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 004517 560 VLDEMRETLEARLA 573 (747)
Q Consensus 560 IIDEMr~TLEaRLA 573 (747)
.+.++++..+.+|.
T Consensus 319 ~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 319 EREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 246
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.59 E-value=4.2e+02 Score=33.80 Aligned_cols=139 Identities=25% Similarity=0.146 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHh-----c-cccchhhhccchhHHHHHHHHHHHHhhh----------
Q 004517 487 ERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEA-----N-DMHAGEIYGERAILATEARELQNRLLSL---------- 550 (747)
Q Consensus 487 EekAkqAK~EAs~aG~DILaKVEELKeML~~AKEA-----N-DmhAGEVyGEKAILaTEArELQSRL~~L---------- 550 (747)
++.+++|+.-|..|+.--+...++....|.++-|+ + --|...+.+|- --+||.-|..+
T Consensus 699 ~~~~~~le~~a~~A~~~e~~si~~~~~fl~~~~Ea~l~~~l~~h~f~~Iv~el------s~~lqk~l~~ltF~dl~~~nd 772 (1311)
T KOG1900|consen 699 AEKAQQLESSAREALALELRSIKEILSFLLVLYEAFLWFLLSQHHFIDIVSEL------SADLQKELSCLTFHDLFTSND 772 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh------CHHHHHHHHhccHHHhcCcch
Confidence 77889999999999999999999999999999998 2 22233333332 22333333322
Q ss_pred -----------HHHhhhHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004517 551 -----------SEERDKSLAVLDEMRETLEARL-------------AAAEDMRKEAEEEKFEKEESARASLAEQEVIMEK 606 (747)
Q Consensus 551 -----------SeERdkaLaIIDEMr~TLEaRL-------------AaAeeEr~AAEeeKieKEesArk~L~EQEalM~k 606 (747)
=..--..=+-+|.+-.-|+.|- |.=..++++|.+...+||..+|..|..--.+.++
T Consensus 773 kel~~~li~slin~~i~s~a~vd~vs~~Lre~Cps~~s~~D~l~ykA~E~L~~~~~~~~~~~ke~~~r~~l~~~~~l~~~ 852 (1311)
T KOG1900|consen 773 KELTKELLISLINRYIMSGASVDYVSELLRERCPSFCSASDILTYKAVELLENAAAKLEATIKELMLRESLSVATKLFNQ 852 (1311)
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHhCcccccchHHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHHhhh
Confidence 1111111124788888898886 3333455688899999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q 004517 607 VVQESKLLQQQAEENSKLREFLMDRGRVVDSLQ 639 (747)
Q Consensus 607 VvEESrkLqqEAEENsKLREFLMDRG~IVDsLQ 639 (747)
+.... ++.+||..-..+|.|.-.++
T Consensus 853 ~~l~~--------~~~~lr~~~f~e~vv~~~~~ 877 (1311)
T KOG1900|consen 853 VDLRL--------ECADLRAERFYEGVVLLSLT 877 (1311)
T ss_pred cchhh--------hHHHHHHHHHHHHhhhhhhh
Confidence 76543 56677766677777765443
No 247
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.45 E-value=8.8e+02 Score=26.56 Aligned_cols=16 Identities=38% Similarity=0.283 Sum_probs=9.2
Q ss_pred cccccccccccccCCC
Q 004517 277 SSVQERASDVCQYRDV 292 (747)
Q Consensus 277 ~~~~e~~s~v~~~~d~ 292 (747)
.+|.-|-+|.-.+++.
T Consensus 147 ~~V~RrysDF~~L~~~ 162 (503)
T KOG2273|consen 147 FSVRRRYSDFLWLRSK 162 (503)
T ss_pred eeEEeehhHHHHHHHH
Confidence 3556666666665554
No 248
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=25.43 E-value=5.1e+02 Score=31.43 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=59.6
Q ss_pred chhHHHhHHHHHHHHHHHHHhccccchhhhccc-----------hhHHHHHHHHHHHHhhhHHHhhhHHH----------
Q 004517 501 GLDIFVKMDELKQMLAHAKEANDMHAGEIYGER-----------AILATEARELQNRLLSLSEERDKSLA---------- 559 (747)
Q Consensus 501 G~DILaKVEELKeML~~AKEANDmhAGEVyGEK-----------AILaTEArELQSRL~~LSeERdkaLa---------- 559 (747)
+..|=.+||.||+=+-.||++.+.---.+.-|+ -.=|--+-+||.||..|++|=-++=+
T Consensus 431 ~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~ 510 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLM 510 (762)
T ss_pred CccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHH
Confidence 456677788888888888776554333333332 11233467899999999977655422
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004517 560 V-LDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLA 598 (747)
Q Consensus 560 I-IDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~ 598 (747)
- ++.+++.+..||.+|-.-..--++-...|+...-+.|.
T Consensus 511 eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s 550 (762)
T PLN03229 511 EKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALS 550 (762)
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhc
Confidence 2 66677777788877665555444444444444433333
No 249
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.11 E-value=8.3e+02 Score=27.81 Aligned_cols=71 Identities=30% Similarity=0.446 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 004517 562 DEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDS 637 (747)
Q Consensus 562 DEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDs 637 (747)
|=+-.+|+..+..+...+..+ +...+|-..|+..+.+-+--++.+++..|.||++.|..+-=| =.||.|-.
T Consensus 435 drl~~~L~qk~~~~~k~~~~~-~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~----y~gR~Vni 505 (507)
T PF05600_consen 435 DRLVESLQQKLKQEEKLRRKR-EDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKR----YKGRPVNI 505 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCeeec
Confidence 344445555555544443333 334556667888889999999999999999999998865322 24666643
No 250
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.06 E-value=8e+02 Score=26.81 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=10.0
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 004517 553 ERDKSLAVLDEMRETLEA 570 (747)
Q Consensus 553 ERdkaLaIIDEMr~TLEa 570 (747)
+.|.||--+++|-+.|-.
T Consensus 94 ~yNdYLE~vEdii~nL~~ 111 (309)
T TIGR00570 94 EYNDYLEEVEDIVYNLTN 111 (309)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 455566666666555533
No 251
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase. serve to protect against oxidative damage and participate in a biosynthetic or detoxification reactions.
Probab=25.01 E-value=5.6e+02 Score=29.51 Aligned_cols=115 Identities=13% Similarity=0.032 Sum_probs=65.8
Q ss_pred HHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhh------hHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 004517 514 MLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERD------KSLAVLDEMRE-------TLEARLAAAEDMRK 580 (747)
Q Consensus 514 ML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERd------kaLaIIDEMr~-------TLEaRLAaAeeEr~ 580 (747)
.+..+++-|.+.+-+=-++...|..+|.++-.+|..+.+.=| ++..+|+.|+. |+=+||.+...+..
T Consensus 375 v~~~gr~p~l~l~~~~~~~~~~l~~~a~~il~~l~~~a~~ld~~~~~~~y~~al~~~~~ki~~P~lT~Sa~ll~~~~~~~ 454 (512)
T TIGR01434 375 VILEGRKPGLTLGIGCETAQFPLPVVGKDLFRDLKRVAQTLDSIRGGEAYQKACDELVACFDNPELTFSAQILRSMIDTG 454 (512)
T ss_pred HHHhCCCcCCeecccCCCccccHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHhcCcccCHHHHHHHHHHhcC
Confidence 444555666665532222336778888888888888775533 35678888887 44466665554322
Q ss_pred H----HHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 004517 581 E----AEEEKFEKEE-SARASLAEQEVIMEKVVQESKLLQQQAEENS--KLREFL 628 (747)
Q Consensus 581 A----AEeeKieKEe-sArk~L~EQEalM~kVvEESrkLqqEAEENs--KLREFL 628 (747)
- -...+.-++. .++..-....+-+++.++.|..=|++.|.+- ..-+||
T Consensus 455 ~~~f~l~lA~~~~~~~~~~~~~~~~~~~~~~~a~~S~~~Q~~~E~~d~~~f~~~l 509 (512)
T TIGR01434 455 IGGTGLAFAEAYRELFREEPLEILEQERFEAERSASLRRQQEIERADTEPFATWL 509 (512)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 1 1122222222 2333334556667777888877777777554 455555
No 252
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=24.95 E-value=3.4e+02 Score=30.71 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHhccCc
Q 004517 643 SVICQDVRLLKEKFDERV 660 (747)
Q Consensus 643 SVIceDV~~LKervD~rl 660 (747)
+..-.++.+|.-|++.+=
T Consensus 377 ~a~~~~~~~l~iR~P~G~ 394 (460)
T KOG1363|consen 377 SASEEEAITVAIRLPSGT 394 (460)
T ss_pred CcCcccceeeEEECCCCC
Confidence 555566666666555543
No 253
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.80 E-value=1.1e+03 Score=26.96 Aligned_cols=180 Identities=19% Similarity=0.201 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHh-ccccchhhh
Q 004517 452 IDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEA-NDMHAGEIY 530 (747)
Q Consensus 452 IesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEA-NDmhAGEVy 530 (747)
|+.++.-|...++....|-..+..+..=+..++.+=.+++.- ..++++.+.-..-. |.....+ -
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~--------------l~~~~~~I~~~~~~l~~l~~q~-r 111 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD--------------LKKLRKQIADLNARLNALEVQE-R 111 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHhhHHHHHHHHHHHHHHH-H
Confidence 455566666666666666555555555555444433333222 22222222221111 1111111 4
Q ss_pred ccchhHHHHHHHHHHH------HhhhHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHH----HHHH
Q 004517 531 GERAILATEARELQNR------LLSLSEER----DKSLAVLDEMRETLEARLAAAEDMRK--EAEEEKFEKE----ESAR 594 (747)
Q Consensus 531 GEKAILaTEArELQSR------L~~LSeER----dkaLaIIDEMr~TLEaRLAaAeeEr~--AAEeeKieKE----esAr 594 (747)
..+.+|+--..-+|.- ...++.|. ++....+..|-..+..|++.-....+ ++.++.++.| ..++
T Consensus 112 ~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 112 EQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666652 11222222 44555556666555555543322211 2222222222 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCcccccccchhhhhh
Q 004517 595 ASLAEQEVIMEKVVQESKLLQQQAEENSKLR-EFLMDRGRVVDSLQGEISVIC 646 (747)
Q Consensus 595 k~L~EQEalM~kVvEESrkLqqEAEENsKLR-EFLMDRG~IVDsLQGEISVIc 646 (747)
....+|..-|++..+|=+++.++-+-+..-+ .-|-..+.==..|-++|+.+-
T Consensus 192 ~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 192 SEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667777788888888888777766555432 334455555667888888887
No 254
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.76 E-value=8.3e+02 Score=25.68 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 004517 456 EEMIEDAKYNKKNLFKAMESVM 477 (747)
Q Consensus 456 E~~IsdaK~nK~~L~ssmEsi~ 477 (747)
++.+...+.+++.|....+.+.
T Consensus 155 ~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 155 EENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333333
No 255
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.61 E-value=3.7e+02 Score=24.16 Aligned_cols=47 Identities=32% Similarity=0.360 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 564 MRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLL 614 (747)
Q Consensus 564 Mr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkL 614 (747)
|...||+||. +-|.+.|.+++.-.|=+. +|+||..+|++.-..-|.|
T Consensus 2 ~~~~lE~Ri~--eLE~r~AfQE~tieeLn~--~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 2 QDMELEARII--ELEIRLAFQEQTIEELND--ALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred chhhHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3467899986 456777888877766653 6788888888765555444
No 256
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=24.32 E-value=81 Score=25.31 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHhhcccchHHHHHHHHhhhccchhhhhhHhh
Q 004517 9 CLMEMFPQIDTRLLKAVAIEHSKDADAAATIVL 41 (747)
Q Consensus 9 ~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl 41 (747)
-|+.+||+-..-.|..|---...|+-.|++.+|
T Consensus 7 iL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 7 ILTRVFPHQKRSVLELILQRCNGDVVQAIEQFL 39 (39)
T ss_pred HHHHHCCCCChHHHHHHHHHcCCcHHHHHHHhC
Confidence 488999999999999999999999999988764
No 257
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.28 E-value=1.5e+03 Score=28.59 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=18.0
Q ss_pred hHHHhHHHHHHHHHHHHHhcccc-chhhh
Q 004517 503 DIFVKMDELKQMLAHAKEANDMH-AGEIY 530 (747)
Q Consensus 503 DILaKVEELKeML~~AKEANDmh-AGEVy 530 (747)
|+-..+|.||.=|..|+|-|.+. +.|=|
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y 436 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERY 436 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHH
Confidence 44556677777777777777653 34445
No 258
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.20 E-value=2.4e+02 Score=28.46 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 561 LDEMRETLEARLAAAEDMRKEAEEEK 586 (747)
Q Consensus 561 IDEMr~TLEaRLAaAeeEr~AAEeeK 586 (747)
....|..++.+|..-+++.+++++||
T Consensus 151 a~~~~~e~~~~l~~l~~ei~~~~~e~ 176 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKEIQAAKQEK 176 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556777777777777777666654
No 259
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=24.18 E-value=2e+02 Score=30.02 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.4
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 004517 553 ERDKSLAVLDEMRETLEA 570 (747)
Q Consensus 553 ERdkaLaIIDEMr~TLEa 570 (747)
.|.+++-++.+|--+||+
T Consensus 33 ~rk~~ie~lksi~s~lQ~ 50 (219)
T COG2517 33 DRKRAIEALKSIESELQA 50 (219)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 478899999999999886
No 260
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.02 E-value=4.2e+02 Score=28.79 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHH
Q 004517 542 ELQNRLLSLSEERDKSLAVLDEMRET 567 (747)
Q Consensus 542 ELQSRL~~LSeERdkaLaIIDEMr~T 567 (747)
+|..++.+|.++..+...-+++++..
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333333
No 261
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.00 E-value=1.3e+03 Score=27.95 Aligned_cols=108 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQ 615 (747)
Q Consensus 536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLq 615 (747)
|-+|.+.+..-|.+...|+++...+..||+...+..=..-...|..-.+-|+++-..-+--=.=+|....-=+|=|-.=+
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 616 QQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 616 qEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
.++| .+.|.-||...-+++..|+.++++
T Consensus 119 sQve---------------fE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 119 SQVE---------------FEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred hHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
No 262
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.97 E-value=7.5e+02 Score=24.84 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=8.2
Q ss_pred hhHHHHHHHhccCccc
Q 004517 647 QDVRLLKEKFDERVPL 662 (747)
Q Consensus 647 eDV~~LKervD~rlpl 662 (747)
+=+..|+.-+...+||
T Consensus 109 ~m~~~L~~~v~~d~Pf 124 (251)
T PF11932_consen 109 QMIDELEQFVELDLPF 124 (251)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3344555555555555
No 263
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.90 E-value=3.3e+02 Score=25.61 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=28.9
Q ss_pred hHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHH
Q 004517 503 DIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE 552 (747)
Q Consensus 503 DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSe 552 (747)
.++..+++||+.+...-| |.+-|.-|-+-|+.||.++..
T Consensus 19 ~l~~el~~LK~~~~el~E-----------EN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 19 VLLKELGALKKQLAELLE-----------ENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhc
Confidence 367778888887665444 556799999999999987733
No 264
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.87 E-value=3e+02 Score=25.52 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=29.1
Q ss_pred hHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHH
Q 004517 503 DIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE 552 (747)
Q Consensus 503 DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSe 552 (747)
.++..+++||+.+..--| |.+-|.-|-+.|+.||..+..
T Consensus 19 ~l~~~~~~LK~~~~~l~E-----------EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLE-----------ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhc
Confidence 356778888887665544 445688999999999988765
No 265
>PRK07248 hypothetical protein; Provisional
Probab=23.87 E-value=2.5e+02 Score=24.13 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004517 600 QEVIMEKVVQESKLLQQQ 617 (747)
Q Consensus 600 QEalM~kVvEESrkLqqE 617 (747)
=+.++..|+..|+++|++
T Consensus 68 i~~if~~I~~~S~~~Q~~ 85 (87)
T PRK07248 68 IVATFKDIMKRSRDYQTQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 367899999999999875
No 266
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.86 E-value=7.2e+02 Score=28.61 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=59.9
Q ss_pred hccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HH
Q 004517 521 ANDMHAGEIYGERAILATEARELQNRLLSLSEERDKS---LAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEES---AR 594 (747)
Q Consensus 521 ANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdka---LaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEes---Ar 594 (747)
.||---++++.+ +-+..|-+.+.-+-.|++.| +.+++|++.+- .+++...++++....|+. +.
T Consensus 131 ~~d~PlC~eC~d-----~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~------~~~~~~~e~~~l~~eE~~L~q~l 199 (447)
T KOG2751|consen 131 QVDHPLCEECMD-----VLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV------SEEDLLKELKNLKEEEERLLQQL 199 (447)
T ss_pred CcccchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543 22344555555666677665 44555555553 222222222222222221 22
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HhhcCcccccccchhhhhhhhH
Q 004517 595 ASLAEQEVIMEK--VVQESKLLQQQAEENSKLREF-LMDRGRVVDSLQGEISVICQDV 649 (747)
Q Consensus 595 k~L~EQEalM~k--VvEESrkLqqEAEENsKLREF-LMDRG~IVDsLQGEISVIceDV 649 (747)
+.|.++++.++- ...++++++...+++.++|+| +++|-.| -.|||+..|-.-+
T Consensus 200 k~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~--~~~del~Sle~q~ 255 (447)
T KOG2751|consen 200 EELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLI--EHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccchHHHHHHHH
Confidence 333334443332 345788999999999999998 4455444 3466666665444
No 267
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=23.72 E-value=7e+02 Score=26.21 Aligned_cols=87 Identities=15% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHH
Q 004517 473 MESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE 552 (747)
Q Consensus 473 mEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSe 552 (747)
+..+-+|...+|+... +++..+..+.|+.+|-|+...=.+ -++.+|-+
T Consensus 79 L~nlEqmvsdiEft~v--qk~V~~gLk~GN~~lkkl~~~~~i------------------------------deV~rimd 126 (209)
T KOG2910|consen 79 LINLEQMVSDIEFTQV--QKKVMEGLKQGNEALKKLQQEFDI------------------------------DEVDRIMD 126 (209)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCH------------------------------HHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004517 553 ERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEE 591 (747)
Q Consensus 553 ERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEe 591 (747)
++..+.+.-+||-.+|..+|-+-.++..-||-.-++.|.
T Consensus 127 dt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~ 165 (209)
T KOG2910|consen 127 DTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESEL 165 (209)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh
No 268
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=23.55 E-value=1.3e+03 Score=28.00 Aligned_cols=126 Identities=17% Similarity=0.267 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHh-------------ccccchhhhc-cchhHHHHHHHHHHH
Q 004517 481 REVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEA-------------NDMHAGEIYG-ERAILATEARELQNR 546 (747)
Q Consensus 481 rEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEA-------------NDmhAGEVyG-EKAILaTEArELQSR 546 (747)
..++..=..|+++-.+|++-|.+ =||+++++..-|+| |+..++..-. ....-..-.+.||.-
T Consensus 468 s~A~~~Lr~AQe~L~eAL~~gAs----~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~m 543 (820)
T PF13779_consen 468 SDAERRLRAAQEALREALERGAS----DEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRM 543 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHH
Confidence 34455556788899999999954 25555544444433 1111111110 011111223555555
Q ss_pred Hhhh---HH--HhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 547 LLSL---SE--ERDKSLAVLDEMRETLEA-RLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKL 613 (747)
Q Consensus 547 L~~L---Se--ERdkaLaIIDEMr~TLEa-RLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrk 613 (747)
|.+| .+ -++.|-..|+||.+.||. |.+..+. .+..+..+.-+--..++.+|..||+..-...+.
T Consensus 544 md~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q~---~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~q~ 613 (820)
T PF13779_consen 544 MDRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQQ---QQQQEMQQAMEELGDLLRRQQQLMDETFRQLQE 613 (820)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5444 43 378899999999999886 2222221 333334444445567888999999988754433
No 269
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=23.55 E-value=6.4e+02 Score=23.90 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 004517 562 DEMRETLEARL 572 (747)
Q Consensus 562 DEMr~TLEaRL 572 (747)
+|++..+++|.
T Consensus 144 ~~~~~ai~~~~ 154 (215)
T cd03403 144 QEIQEAMAKQA 154 (215)
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 270
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=23.45 E-value=2.1e+02 Score=30.64 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.4
Q ss_pred chhhhhhhhHHHHHHH
Q 004517 640 GEISVICQDVRLLKEK 655 (747)
Q Consensus 640 GEISVIceDV~~LKer 655 (747)
.|.+=+..|+..||..
T Consensus 223 ~el~~aK~~~~~~~~~ 238 (264)
T PF07246_consen 223 HELSDAKEDMIRLRND 238 (264)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4455555555555544
No 271
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=23.20 E-value=5.2e+02 Score=22.73 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=24.3
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 548 LSLSEERDKSLAVLDEMRETLEARLAAAEDMRK 580 (747)
Q Consensus 548 ~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~ 580 (747)
++|-+--..|-.||++=|..-..||..|.++-.
T Consensus 7 q~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~ 39 (105)
T PF03179_consen 7 QQLLEAEKEAQEIVEEARKEREQRLKQAKEEAE 39 (105)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555567888999999888888887776543
No 272
>PF13514 AAA_27: AAA domain
Probab=22.85 E-value=1.4e+03 Score=27.77 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004517 607 VVQESKLLQQQAEENSKLREFL 628 (747)
Q Consensus 607 VvEESrkLqqEAEENsKLREFL 628 (747)
..+.+.+.++-.++-..++.-|
T Consensus 849 ~~~~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 849 AEERAEERRELREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443344444445555
No 273
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=22.83 E-value=1e+03 Score=26.82 Aligned_cols=54 Identities=28% Similarity=0.243 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHH
Q 004517 590 EESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLK 653 (747)
Q Consensus 590 EesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LK 653 (747)
+..|..+|..+ |-.-..+|-.+|++|.++-.+-.+.|-.. -.+..+-.|+..|+
T Consensus 385 ~~q~~~lL~m~--L~~LT~~e~~kL~~e~~~l~~ei~~l~~~--------t~~~~w~~DL~~~~ 438 (439)
T PHA02592 385 GEYADKLVAMN--IYSMTSDEREKLQKEAEELEKEHEYWKKT--------TAKKEYIKDLEELK 438 (439)
T ss_pred HHHHHHHHHhH--HHHhhHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Confidence 34566666654 23334667778888877766666665552 23344555555544
No 274
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=22.81 E-value=14 Score=45.74 Aligned_cols=108 Identities=27% Similarity=0.432 Sum_probs=75.1
Q ss_pred ccccccccc---cCCCCCCCCCCCC------ChhhhhcccccccccCCCCCCCcccCCCCcceeeecCCCCcchhhcccc
Q 004517 112 GSITTGYAT---STDLPCAHNSDSV------SLDKALNASAVSQSYDPNDSSGLLYGNPESEEVILLGKTPESVVEVGSD 182 (747)
Q Consensus 112 gs~~~~~~~---~~~~~~~~n~~~~------~~d~a~~~s~~~~~yd~nd~~~~~y~n~esee~i~l~~~~~~~~~~g~d 182 (747)
.-||-||.. |.-.||++-.|+. .|.+|+.--...+++ +.--|||.|.|-=|.+-|+|-|...++|+.
T Consensus 1082 ANVTYGYTsA~FSGRMPCaElADsIV~~GRETLEraIe~Vn~~d~w----~AkVVYGDTDSmFVlL~GaT~eeAF~IGq~ 1157 (1488)
T KOG0968|consen 1082 ANVTYGYTSANFSGRMPCAELADSIVQKGRETLERAIEMVNRGDYW----GAKVVYGDTDSMFVLLPGATVEEAFEIGQE 1157 (1488)
T ss_pred hhccccccccccCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcC----CeEEEEcCCCceEEEecCccHHHHHHHHHH
Confidence 468889953 6789999987764 466666544444443 345799999999999999999999999999
Q ss_pred ccccccCCCcccccCCCcccccccCceeeeecccccccccccCC
Q 004517 183 KASTVMPNECGNDDLGGACANTESNGVVSVDKGQYTDVKFESEH 226 (747)
Q Consensus 183 ~~s~v~p~~~~n~~~~~~c~~~e~~~~~~~~k~~y~~~~~~~~~ 226 (747)
+|..|--..-..+-+-- -----+-|-+-|-.|...+||+..
T Consensus 1158 iAe~VT~~NP~PV~LKf---EKVY~PCvL~tKKRYVG~~YEs~~ 1198 (1488)
T KOG0968|consen 1158 IAEAVTNSNPKPVVLKF---EKVYHPCVLLTKKRYVGFMYESPN 1198 (1488)
T ss_pred HHHHHHhcCCCCeEEEe---eeecccceeeeccceeeeeeccCc
Confidence 99888644333222210 000123356778889888888764
No 275
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=22.79 E-value=3.6e+02 Score=31.05 Aligned_cols=113 Identities=13% Similarity=0.258 Sum_probs=69.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHH---------
Q 004517 453 DLLEEMIEDAKYNKKNLFKAMESVMNMMREVE----IQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAK--------- 519 (747)
Q Consensus 453 esLE~~IsdaK~nK~~L~ssmEsi~~MmrEVE----LqEekAkqAK~EAs~aG~DILaKVEELKeML~~AK--------- 519 (747)
++|+..+......=+.|+..++ ..++|-- ---++|++.|.. -.++..-+++||+.+..--
T Consensus 41 ~sl~~s~~~~~~~N~~~~~~l~---~k~~~~p~k~~~~~~~A~~vk~~----S~~l~~yl~~LK~~i~~~a~g~~~~g~~ 113 (523)
T TIGR03517 41 ESLEAAVGNSEKYNNALLAELD---KAVAKAPAKDKQWQESAQKVRTK----SDSLYDYMNDLKEEIIRKADGEKEDGGP 113 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHhChHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 5677777777777677777666 2222221 112344444444 3579999999999887751
Q ss_pred ---HhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHH-H-----HHHHHHHHHHH
Q 004517 520 ---EANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDE-M-----RETLEARLAAA 575 (747)
Q Consensus 520 ---EANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDE-M-----r~TLEaRLAaA 575 (747)
..|.-...+.|+...-+.-++++|+.+|.... +..+.++.. . +..|+.|+.+.
T Consensus 114 ~~~~d~~~~~~~~~~~~~~~~~~G~~l~~~in~yr---~~i~~~~~~~~~~~~~~~~l~~~~~t~ 175 (523)
T TIGR03517 114 KGAKEKDDLEAVMVGTLGPINGKGYELQASLNKYR---EDVLSLIKDDAKMKLIKSALDTESDPY 175 (523)
T ss_pred ccccccccHhHHhhhcCCCCCchHHHHHHHHHHHH---HHHHHHhcCccchhhHHHHhhcccCcc
Confidence 12333466667766667779999999887654 455555543 2 45666666553
No 276
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=22.74 E-value=2.7e+02 Score=31.39 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchhhhccchh--HHHHHHHHHHHHhhhHHHh-hhH--H-----
Q 004517 489 AAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAI--LATEARELQNRLLSLSEER-DKS--L----- 558 (747)
Q Consensus 489 kAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAI--LaTEArELQSRL~~LSeER-dka--L----- 558 (747)
..+..+.++.+++-+|=.+...-.+|...+ .+|++. |.....+.+.||.+|..+= +|+ -
T Consensus 57 ~~~~~~~~~l~~hP~lg~~~~~~~~~~~~S-----------~~EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fvi~v 125 (591)
T PRK13590 57 AGRDAQLGLIRAHPELAGKAMVAGSLTAES-----------THEQGKAGLTHCTPEEFARIQQLNADYNARFGFPFILAV 125 (591)
T ss_pred CCHHHHHHHHHhCccccCCcccCccchhHh-----------HHHHHhhhcccCCHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445556677777777666543333333322 334442 3332334455566555431 111 0
Q ss_pred -------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 559 -------AVLDEMRETLEARLAA--AEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQ 616 (747)
Q Consensus 559 -------aIIDEMr~TLEaRLAa--AeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqq 616 (747)
.--+||-..|++||.- .+|.+.+.+|.+.=-.-+=.+++...=.+++.+...-..|-+
T Consensus 126 ~~~~a~g~~~~~il~~~~~Rl~n~~~~E~~~a~~e~~~I~~~Rl~~~~~~~~~~~~r~~~~~~~l~~ 192 (591)
T PRK13590 126 RGPRGLGLSRQEIIATFARRLDNHPDFELAEALRNIHRIAEIRLNDKFGAEPVLGNDVWDWAERLAA 192 (591)
T ss_pred cCccccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 1135666666666654 333333333322111122234444444555555554444443
No 277
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=22.70 E-value=9.8e+02 Score=25.77 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=13.2
Q ss_pred HHHhhcCcccccccchhhh
Q 004517 626 EFLMDRGRVVDSLQGEISV 644 (747)
Q Consensus 626 EFLMDRG~IVDsLQGEISV 644 (747)
+-|-+.|.-.|-+..+|-.
T Consensus 230 ~~L~~~G~f~dpv~~~i~~ 248 (291)
T PF06098_consen 230 DSLEDSGYFYDPVEREIET 248 (291)
T ss_pred HHHHHCCCCCChHHHHHHH
Confidence 4467888888877666654
No 278
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.69 E-value=2.9e+02 Score=23.90 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhc
Q 004517 593 ARASLAEQEVIMEKVVQESKLLQQQ----AEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFD 657 (747)
Q Consensus 593 Ark~L~EQEalM~kVvEESrkLqqE----AEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD 657 (747)
..+.|+|+....+..++|-.+|.+. ....-|||.-.-+.-.-++.|...+.-.-.++..|+.++.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888888888888887777543 3445688888888888888888888888888888888764
No 279
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=22.69 E-value=9.6e+02 Score=25.66 Aligned_cols=27 Identities=44% Similarity=0.599 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccc
Q 004517 610 ESKLLQQQAEENSKLREFLMDRGRVVD 636 (747)
Q Consensus 610 ESrkLqqEAEENsKLREFLMDRG~IVD 636 (747)
.-+.|..|-|+--.|+|-+=.|+++|.
T Consensus 188 k~~~L~~Q~edAk~LKe~~drRe~~v~ 214 (264)
T PF08687_consen 188 KRRLLQRQLEDAKELKENLDRRERVVS 214 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356677777777788888888888875
No 280
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.68 E-value=4.4e+02 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcCcccccccchhhh
Q 004517 619 EENSKLREFLMDRGRVVDSLQGEISV 644 (747)
Q Consensus 619 EENsKLREFLMDRG~IVDsLQGEISV 644 (747)
..|.+|++-|.+.-.++|+||.++.-
T Consensus 51 ~k~~~le~~l~e~~~~l~~lq~qL~~ 76 (100)
T PF06428_consen 51 EKNEQLEKQLKEKEALLESLQAQLKE 76 (100)
T ss_dssp HHHHHHHHCTTHHCHCCCHCTSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999753
No 281
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=22.67 E-value=1e+02 Score=27.52 Aligned_cols=39 Identities=31% Similarity=0.547 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHH
Q 004517 506 VKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEE 553 (747)
Q Consensus 506 aKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeE 553 (747)
.-++||+.++.+|+..|= |.+|..|.+.|+..|.++...
T Consensus 10 ~Dl~El~~Ll~~a~R~rV---------k~~L~~ei~klE~eI~~~~~~ 48 (79)
T PF09032_consen 10 LDLEELKSLLEQAKRKRV---------KDLLTNEIRKLETEIKKLKEA 48 (79)
T ss_dssp HHHHHHHHHHHHTTTCCH---------HHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999888764 468888888888888888763
No 282
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=1.6e+03 Score=28.17 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=39.7
Q ss_pred chhHHHhHHHHHHH--HHHHHHhccccchhhhc--cchhHHHHHH------HHHHHHhhhHHHhhhHHH--------HHH
Q 004517 501 GLDIFVKMDELKQM--LAHAKEANDMHAGEIYG--ERAILATEAR------ELQNRLLSLSEERDKSLA--------VLD 562 (747)
Q Consensus 501 G~DILaKVEELKeM--L~~AKEANDmhAGEVyG--EKAILaTEAr------ELQSRL~~LSeERdkaLa--------IID 562 (747)
-.|-|.++-.+-++ +..+-..--.+.-+.|. ||.+.++... ..+.||.+.-+.|+.+.. .++
T Consensus 692 kiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~ 771 (988)
T KOG2072|consen 692 KIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGERQSEYE 771 (988)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHH
Confidence 34555544333332 22222223334445554 5555555443 356677777777777664 346
Q ss_pred HHHHHHHHHHHH
Q 004517 563 EMRETLEARLAA 574 (747)
Q Consensus 563 EMr~TLEaRLAa 574 (747)
|++..-++||.|
T Consensus 772 e~~~~~ea~lea 783 (988)
T KOG2072|consen 772 EKLKQFEARLEA 783 (988)
T ss_pred HHHHHHHHHHHH
Confidence 677777777775
No 283
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.41 E-value=6.2e+02 Score=25.43 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=14.3
Q ss_pred ccccchhhhccchhHHHHHH-HHHHHH
Q 004517 522 NDMHAGEIYGERAILATEAR-ELQNRL 547 (747)
Q Consensus 522 NDmhAGEVyGEKAILaTEAr-ELQSRL 547 (747)
-.+..-++|.+|.-+..+++ .|+.+|
T Consensus 98 g~~~l~eil~~R~~I~~~i~~~l~~~l 124 (262)
T cd03407 98 PKLTLDELFEQKDEIAKAVEEELREAM 124 (262)
T ss_pred cCccHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555666667766665544 344433
No 284
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=22.18 E-value=79 Score=37.99 Aligned_cols=146 Identities=25% Similarity=0.284 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHH---------HhHHHHHHHHHHHHHh-ccccchhhhccch--hHHHHHHHHHH
Q 004517 478 NMMREVEIQERAAKEAKAAAVRGGLDIF---------VKMDELKQMLAHAKEA-NDMHAGEIYGERA--ILATEARELQN 545 (747)
Q Consensus 478 ~MmrEVELqEekAkqAK~EAs~aG~DIL---------aKVEELKeML~~AKEA-NDmhAGEVyGEKA--ILaTEArELQS 545 (747)
+...+|.-..+.+..++.+...-|.|++ .|..+|++=..+|+++ ++.| ++|||.. -=.|--=.+
T Consensus 643 sV~~Dv~eL~~g~~l~~kE~e~~~~~~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~--~y~Gespk~tppt~ff~~-- 718 (830)
T KOG1923|consen 643 SVLADVKELNAGMTLAEKETEREGLDVILSEFLDNNKPKMKKLRKDFKDAAEAFEDVV--EYFGESPKTTPPTVFFQL-- 718 (830)
T ss_pred ccchhHHHHHhHHHHHHHHHhhhccchHHHHHHhcccHHHHHHHHHHHHHHHHHHhHh--HhhCCCCCCCCCCccHHH--
Confidence 3445666677888999999999998754 3567777888888888 6554 8899865 111111111
Q ss_pred HHhhhHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 546 RLLSLSEERDKSLAVLDEMRETLEARLA--AAEDMRKEAEEEKF-EKEESARASLAEQEVIMEKVVQESKLLQQQAEENS 622 (747)
Q Consensus 546 RL~~LSeERdkaLaIIDEMr~TLEaRLA--aAeeEr~AAEeeKi-eKEesArk~L~EQEalM~kVvEESrkLqqEAEENs 622 (747)
=.+++.....-++.++.|++ +|.+++.+..+.+. .--..|...+. |++||. |-+|+ +..++.
T Consensus 719 --------f~~F~~~~k~~~~ene~k~~le~A~qe~~~~k~~~~~~~ks~a~~~~~-q~~li~---El~r~---q~~~~~ 783 (830)
T KOG1923|consen 719 --------FVRFVRAYKMARQENEQKKKLEAALQEARAEKEAEREAAKSSAHPKLQ-QAALIR---ELKRR---QIKETS 783 (830)
T ss_pred --------HHHHHHHHHhhhhhhhhhhhHHHHHHHHhhccccccccccCCCchhhh-HHHHHH---HHHHh---cccccc
Confidence 23466667777777776654 44444433322222 11123444344 444433 33444 667777
Q ss_pred HHHHHHhhcCcccccccchhhh
Q 004517 623 KLREFLMDRGRVVDSLQGEISV 644 (747)
Q Consensus 623 KLREFLMDRG~IVDsLQGEISV 644 (747)
+|-+= |+|-|-|++-|=+++
T Consensus 784 ~l~~~--~~g~~edi~~glk~~ 803 (830)
T KOG1923|consen 784 NLASD--DHGAFEDIITGLKSG 803 (830)
T ss_pred ccccc--ccccHHHHhhchhcC
Confidence 77666 999999998887665
No 285
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.15 E-value=1.7e+03 Score=28.43 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=86.7
Q ss_pred cchhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH-HH------HHHH
Q 004517 500 GGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRE-TL------EARL 572 (747)
Q Consensus 500 aG~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~-TL------EaRL 572 (747)
-....-.+.++.+.++..++.+=+.| .++.+.|+..|..++.-|..+..=|+++++ .+ +..+
T Consensus 297 ~~~~~k~rl~~~~k~i~~~kk~~~~~-----------~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~ 365 (1141)
T KOG0018|consen 297 NASHLKKRLEEIEKDIETAKKDYRAL-----------KETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQV 365 (1141)
T ss_pred hhccchhHHHHhhhhHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHH
Confidence 34445577788888888887765444 345566666666666666666666666665 22 2222
Q ss_pred HH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccch
Q 004517 573 AA-----------AEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGE 641 (747)
Q Consensus 573 Aa-----------AeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGE 641 (747)
-. ++++......++..+ +..|.-....+..+-+.-+.|....++..+-|.+|+.. +++++-+
T Consensus 366 ~ey~rlk~ea~~~~~~el~~ln~~~r~~----~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~---i~s~~~~ 438 (1141)
T KOG0018|consen 366 EEYERLKEEACKEALEELEVLNRNMRSD----QDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAK---ITSLSRS 438 (1141)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 11 122222222222211 22334445556666677777888888898989988874 7888888
Q ss_pred hhhhhhhHHHHHHHhcc
Q 004517 642 ISVICQDVRLLKEKFDE 658 (747)
Q Consensus 642 ISVIceDV~~LKervD~ 658 (747)
-.-+|.|...|...+-.
T Consensus 439 ~~e~~~d~~~l~~~~~~ 455 (1141)
T KOG0018|consen 439 YEELKHDLDSLESLVSS 455 (1141)
T ss_pred HHHHhhcHHHHHHHHhh
Confidence 88888888888776543
No 286
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=22.08 E-value=7.1e+02 Score=23.88 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=13.6
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHH
Q 004517 548 LSLSEERDKSLAVLDEMRETLEA 570 (747)
Q Consensus 548 ~~LSeERdkaLaIIDEMr~TLEa 570 (747)
.+|++-|.++-.|+++.+.+-+.
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~ 99 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQ 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667766666543
No 287
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.02 E-value=5.1e+02 Score=28.68 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004517 557 SLAVLDEMRETLEARLAAAEDM 578 (747)
Q Consensus 557 aLaIIDEMr~TLEaRLAaAeeE 578 (747)
+-.-+++.++..+.+|+.|+.+
T Consensus 47 a~~ea~~~~~~~e~~L~~Ak~e 68 (445)
T PRK13428 47 AADRLAEADQAHTKAVEDAKAE 68 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555554443
No 288
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.99 E-value=51 Score=32.70 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhccccchhh
Q 004517 508 MDELKQMLAHAKEANDMHAGEI 529 (747)
Q Consensus 508 VEELKeML~~AKEANDmhAGEV 529 (747)
+|.|..++++|-|-|.+-.-|+
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 6889999999999998766666
No 289
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.90 E-value=3.9e+02 Score=28.48 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccc----------hhhhhhhhHHHHHHHhcc
Q 004517 612 KLLQQQAEENSKLREFLMDRGRVVDSLQG----------EISVICQDVRLLKEKFDE 658 (747)
Q Consensus 612 rkLqqEAEENsKLREFLMDRG~IVDsLQG----------EISVIceDV~~LKervD~ 658 (747)
+++-+.-+.|.|+|+-|++-.+|+..|.+ .+..+..||..|.+..+.
T Consensus 176 ~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~~~~~~~~~~~~Di~~l~~~~~~ 232 (316)
T PRK11085 176 STLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILRDIESLLPHNES 232 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999888887765533 356677777777666543
No 290
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.88 E-value=5.8e+02 Score=23.27 Aligned_cols=57 Identities=30% Similarity=0.262 Sum_probs=26.0
Q ss_pred HHHhhhHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 545 NRLLSLSEERDKS-LAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESK 612 (747)
Q Consensus 545 SRL~~LSeERdka-LaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESr 612 (747)
.||.||+-|---. =..+...-..|+.|+..+.++.+. .++.++++..-+.++++|+|
T Consensus 61 frLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~-----------l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEK-----------LKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcC
Confidence 4677776553111 112333334444444444444333 33445555555555555543
No 291
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.74 E-value=2.2e+02 Score=30.77 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 601 EVIMEKVVQESKLLQQQAEENSKL 624 (747)
Q Consensus 601 EalM~kVvEESrkLqqEAEENsKL 624 (747)
+.|...|+..|+++|++-..+-++
T Consensus 72 ~~If~~I~~~Sr~~Q~~~~~k~~~ 95 (360)
T PRK12595 72 QHLFKEIFKASLELQEDDNRKALL 95 (360)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 789999999999999776555544
No 292
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=21.68 E-value=1.8e+03 Score=28.57 Aligned_cols=185 Identities=18% Similarity=0.164 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccch
Q 004517 452 IDLLEEMIEDAKYNKKNLFKAM----ESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAG 527 (747)
Q Consensus 452 IesLE~~IsdaK~nK~~L~ssm----Esi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAG 527 (747)
|..|.+-|....++++-|..-+ ....+.+.+-+..++++.+-...|-+--.+|..++..|++.- +-|.---.
T Consensus 887 ~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~----~~~~~~~~ 962 (1294)
T KOG0962|consen 887 IEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIY----KLNECFEQ 962 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHH
Confidence 3444444444444444433322 233344444444444433344555555566666666665543 33433333
Q ss_pred hhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHH--HHH
Q 004517 528 EIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKE-AEEEKFEKEESARASLAEQE--VIM 604 (747)
Q Consensus 528 EVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~A-AEeeKieKEesArk~L~EQE--alM 604 (747)
..|-+.- -...++++.||..+..+.+++..-|+=++ +.+|++.+.-.... -.+.+--+++. ..|..|= +-.
T Consensus 963 ~~~~~~~--~~~l~~~~e~l~~~~~~~~~~~~~l~~~~--~~er~l~dnl~~~~l~~q~~e~~re~--~~ld~Qi~~~~~ 1036 (1294)
T KOG0962|consen 963 YGFDDLR--IAQLSESEEHLEERDNEVNEIKQKIRNQY--QRERNLKDNLTLRNLERKLKELEREL--SELDKQILEADI 1036 (1294)
T ss_pred Hhhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHH
Confidence 3333333 67789999999999998888764443221 23333333332222 11222222222 2333332 224
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhc
Q 004517 605 EKVVQESKLLQQQAEE-NSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFD 657 (747)
Q Consensus 605 ~kVvEESrkLqqEAEE-NsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD 657 (747)
.++.++..+|+.+-+- |+-.- -+=|+|..+..-|..+|..+.
T Consensus 1037 ~~~~ee~~~L~~~~~~l~se~~-----------~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1037 KSVKEERVKLEEEREKLSSEKN-----------LLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhhHhh-----------HHHHHHHHHHHHHHHHHHHhh
Confidence 5666888888765431 11111 123777788877877777765
No 293
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=21.64 E-value=5e+02 Score=24.22 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=0.0
Q ss_pred cccchhhhccchhHHHHHH-HHHHHHhhh--------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 523 DMHAGEIYGERAILATEAR-ELQNRLLSL--------------SEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKF 587 (747)
Q Consensus 523 DmhAGEVyGEKAILaTEAr-ELQSRL~~L--------------SeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKi 587 (747)
.+-.-++|..|.-|..+.+ .|+.+|... .++=.+++ +-++.-+.+..+|+.+...|+.++.
T Consensus 108 ~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai----~~k~~a~q~~~~a~~~~~~a~~ea~ 183 (196)
T cd03401 108 QFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV----EAKQVAQQEAERAKFVVEKAEQEKQ 183 (196)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH
Q 004517 588 EKEESAR 594 (747)
Q Consensus 588 eKEesAr 594 (747)
.+...|+
T Consensus 184 ~~~~~A~ 190 (196)
T cd03401 184 AAVIRAE 190 (196)
T ss_pred HHHHHhh
No 294
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.42 E-value=1.3e+03 Score=26.71 Aligned_cols=32 Identities=38% Similarity=0.425 Sum_probs=26.3
Q ss_pred ccchhHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 004517 531 GERAILATEARELQNRLLSLSEERDKSLAVLD 562 (747)
Q Consensus 531 GEKAILaTEArELQSRL~~LSeERdkaLaIID 562 (747)
-|-+=|..-+|.||+||.+|+++|...-+-.+
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999988655444
No 295
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.37 E-value=9.5e+02 Score=25.13 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhcc
Q 004517 469 LFKAMESVMNMMREVEI---------QERAAKEAKAAAVRGG 501 (747)
Q Consensus 469 L~ssmEsi~~MmrEVEL---------qEekAkqAK~EAs~aG 501 (747)
|+..+.++++++.-+-+ +.-...+..+.+..|+
T Consensus 56 lllfiDsvr~i~~~~~~~~~~~n~~~~~~a~~~~~~~l~raq 97 (216)
T KOG1962|consen 56 LLLFIDSVRRIQKYVSEYGSMANPTDQPLARTHLLEALFRAQ 97 (216)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCCccchHHHHHHHHHHHHHH
Confidence 56677888888744433 2335566666677774
No 296
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.22 E-value=2.2e+02 Score=26.80 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004517 570 ARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVV 608 (747)
Q Consensus 570 aRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVv 608 (747)
.||+.-++|-+.++++..++-+.|.++|+.=+.++..|.
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777777777777777777777777777666665554
No 297
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.19 E-value=1.2e+03 Score=27.16 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-hccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 509 DELKQMLAHAKE-ANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKF 587 (747)
Q Consensus 509 EELKeML~~AKE-ANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKi 587 (747)
+.|...+..|++ +++- .-+-.+|-|+..-++.||.+|.++..|...-=-+=.=|+..++.++..+++.++.-.+...
T Consensus 354 ~~~e~~~~e~~~l~~~~--~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~ 431 (493)
T KOG0804|consen 354 QYYELLITEADSLKQES--SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALG 431 (493)
T ss_pred HHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004517 588 EKEESARASLAEQEVIM 604 (747)
Q Consensus 588 eKEesArk~L~EQEalM 604 (747)
.+++.-..+=..--.||
T Consensus 432 s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHhHh
No 298
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.75 E-value=8.7e+02 Score=24.41 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517 596 SLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658 (747)
Q Consensus 596 ~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~ 658 (747)
.+.+-|..|..+-+....||.++. ++++--.+...=|=.|+.++..|-+.+.-++.+|..
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~---~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAA---KLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555432 233222233344556777777777777777777764
No 299
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=20.58 E-value=2.3e+02 Score=23.08 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHh
Q 004517 505 FVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLL 548 (747)
Q Consensus 505 LaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~ 548 (747)
|.-+.-++.|+..||.++.. -|=++|.+=.+|||..+.
T Consensus 2 leQi~~I~~~I~qAk~~~r~------dEV~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 2 LEQINIIESYIKQAKAARRF------DEVATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHTT-H------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHH
Confidence 34456688999999999874 677889988999988764
No 300
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=20.52 E-value=5.7e+02 Score=26.95 Aligned_cols=6 Identities=50% Similarity=0.506 Sum_probs=2.5
Q ss_pred hHHHHH
Q 004517 535 ILATEA 540 (747)
Q Consensus 535 ILaTEA 540 (747)
-|..|+
T Consensus 251 ~l~~e~ 256 (321)
T PF07946_consen 251 KLSPEA 256 (321)
T ss_pred eeCHHH
Confidence 344443
No 301
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=20.44 E-value=2.1e+02 Score=28.10 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 591 ESARASLAEQEVIMEKVVQESKLLQQQAEEN 621 (747)
Q Consensus 591 esArk~L~EQEalM~kVvEESrkLqqEAEEN 621 (747)
+.|.++...=..-+..++.||.+|-++..+|
T Consensus 88 ~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 88 KQANELQEKLQSAVQSLVQESQKLAKEVSEN 118 (155)
T ss_dssp HT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666777888888888887776
No 302
>PRK10869 recombination and repair protein; Provisional
Probab=20.38 E-value=1.3e+03 Score=26.27 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 539 EARELQNRLLSLSEERDKSLAVLDEM---RETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQ 615 (747)
Q Consensus 539 EArELQSRL~~LSeERdkaLaIIDEM---r~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLq 615 (747)
+..+++.||..|..=..||=.-|+++ ++.++.+|..-+.....-++-..+.++...+++..-+.|=.+=.+-.++|.
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~ 376 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELA 376 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887777776555544 334444444433322222222222333333333334444444455566666
Q ss_pred HHHHHHHHHHHHHhhcCccc
Q 004517 616 QQAEENSKLREFLMDRGRVV 635 (747)
Q Consensus 616 qEAEENsKLREFLMDRG~IV 635 (747)
++.. ..|+++-|.++++.
T Consensus 377 ~~v~--~~L~~L~m~~a~f~ 394 (553)
T PRK10869 377 QLIT--ESMHELSMPHGKFT 394 (553)
T ss_pred HHHH--HHHHHcCCCCcEEE
Confidence 6554 45889999999754
No 303
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.33 E-value=9.6e+02 Score=24.75 Aligned_cols=96 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517 535 ILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFE-KEESARASLAEQEVIMEKVVQESKL 613 (747)
Q Consensus 535 ILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKie-KEesArk~L~EQEalM~kVvEESrk 613 (747)
+|--..++.|+-|.++....-..++.--.....|+.-...++.-..-|+..... .|.+|+++|.+...+.+.+.....-
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~ 107 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAE 107 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004517 614 LQQQAEENSKLREFLMD 630 (747)
Q Consensus 614 LqqEAEENsKLREFLMD 630 (747)
+++..+-=.+||.-++.
T Consensus 108 ~~~~~~~~~~l~~~~~~ 124 (225)
T COG1842 108 LQQAEEQVEKLKKQLAA 124 (225)
T ss_pred HHHHHHHHHHHHHHHHH
No 304
>PRK10865 protein disaggregation chaperone; Provisional
Probab=20.31 E-value=1.5e+03 Score=27.12 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=7.1
Q ss_pred cccchhhhccchh
Q 004517 523 DMHAGEIYGERAI 535 (747)
Q Consensus 523 DmhAGEVyGEKAI 535 (747)
...++..|--|||
T Consensus 379 ry~~~~~~pdkAi 391 (857)
T PRK10865 379 RYIADRQLPDKAI 391 (857)
T ss_pred ccccCCCCChHHH
Confidence 3445556666664
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=20.29 E-value=6.7e+02 Score=24.19 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q 004517 560 VLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQ 639 (747)
Q Consensus 560 IIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQ 639 (747)
.|++|+..-+..+..-+.+.+.++..-+ ||+..+.++. .-..-. +.=.++.-.+--.+.|++...-||++|+.=
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~~n~~-kesir~~~~~-l~~~~~----~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l 77 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAKSNLG-KESIRMALED-LADHYC----KIGDLEEALKAYSRARDYCTSPGHKIDMCL 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHH-HHHHHH----HhhhHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 5788999999999988888888885544 3333332222 112222 223566667778889999999999999653
Q ss_pred --chhhhhhhhHHHHHHH
Q 004517 640 --GEISVICQDVRLLKEK 655 (747)
Q Consensus 640 --GEISVIceDV~~LKer 655 (747)
=+|++...|..+++.-
T Consensus 78 ~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 78 NVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 2455556665555544
No 306
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=20.13 E-value=1.6e+03 Score=27.37 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=42.3
Q ss_pred hhhhccchh-HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004517 527 GEIYGERAI-LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDM 578 (747)
Q Consensus 527 GEVyGEKAI-LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeE 578 (747)
..+-.|.+- +..++-.|+.-|.+|.+|||+..+=|+-=-.-++.+.+.|.+.
T Consensus 459 aqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEq 511 (739)
T PF07111_consen 459 AQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQ 511 (739)
T ss_pred HHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455567766 6788889999999999999999998887777777888888764
No 307
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.07 E-value=6.5e+02 Score=27.76 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHhhhhh
Q 004517 452 IDLLEEMIEDAKYNKK 467 (747)
Q Consensus 452 IesLE~~IsdaK~nK~ 467 (747)
+..|++-|..++....
T Consensus 73 ~~~l~~~l~~l~~~~~ 88 (525)
T TIGR02231 73 LAELRKQIRELEAELR 88 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
Done!