Query 004517
Match_columns 747
No_of_seqs 29 out of 31
Neff 1.9
Searched_HMMs 29240
Date Tue Mar 26 17:59:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004517.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1825-1829//hhsearch_pdb/004517hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhy_A CUE domain-containing p 1.0 1 1 37.5 4.2 43 1-43 16-58 (67)
2 1p3q_Q VPS9P, vacuolar protein 1.0 1 1 37.1 3.4 40 3-42 12-51 (54)
3 1wgl_A TOLL-interacting protei 1.0 1 1 35.3 4.9 51 3-53 9-59 (59)
4 3oja_B Anopheles plasmodium-re 1.0 1 1 34.9 9.7 123 539-661 457-586 (597)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 27.6 20.2 88 566-656 2010-2100(3245)
6 1otr_A Protein CUE2; protein-p 1.0 1 1 27.2 3.4 38 6-43 7-44 (49)
7 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 24.6 12.8 41 75-116 130-170 (1080)
8 1i84_S Smooth muscle myosin he 1.0 1 1 23.5 9.6 42 74-116 142-183 (1184)
9 2xs1_A Programmed cell death 6 1.0 1 1 19.1 14.6 79 451-529 435-519 (704)
10 2e7s_A RAB guanine nucleotide 1.0 1 1 17.7 7.8 82 560-644 43-128 (135)
No 1
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=37.55 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 9547999999861243028889998853022412245674410
Q 004517 1 MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTE 43 (747)
Q Consensus 1 Mgfk~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~e 43 (747)
+-|.+....|++|||++|..+++.|-.....|+|+|+...|.-
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8789999999998788999999999999499789999999826
No 2
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=1.00 E-value=1 Score=37.13 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4799999986124302888999885302241224567441
Q 004517 3 FNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLT 42 (747)
Q Consensus 3 fk~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ 42 (747)
+++++..|++|||.+|.-+++.|.+...-+.|+++...|.
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999998866678999999999839978889999986
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=1.00 E-value=1 Score=35.26 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 479999998612430288899988530224122456744102345567988
Q 004517 3 FNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEKSL 53 (747)
Q Consensus 3 fk~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ev~Pf~s~~~~ 53 (747)
+.+.-..|++|||.+|..+++.|-..+..|+|+|....|.--.|-..+.+|
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 899999999987999999999999994997899999998175777799998
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=34.92 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999852089754577999999999999999989-------99999999887389999999999999999999987
Q 004517 539 EARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAE-------DMRKEAEEEKFEKEESARASLAEQEVIMEKVVQES 611 (747)
Q Consensus 539 EArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAe-------eEr~AAEeeKieKEesArk~L~EQEalM~kVvEES 611 (747)
+..+++..+.+|.++.+.--..+..|+..++.|..... ..+...+++...-++...+.+.+-...-.++.+.-
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQ 536 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89889999999999998899999999998655554027661124787888999999988643236788888877655420
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999978899997412833002452045665359999997204755
Q 004517 612 KLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVP 661 (747)
Q Consensus 612 rkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKekvD~rip 661 (747)
+.+++-.++..+|+..+-.+-..+.-|+-|+.-+-+++++|.++++++-.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 11136776648899987310147899888899999999999987437976
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=27.62 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 99999999989999999998873899999---999999999999999879999999997889999741283300245204
Q 004517 566 ETLEARLAAAEDMRKEAEEEKFEKEESAR---ASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEI 642 (747)
Q Consensus 566 ~TLEaRLAaAeeEr~AAEeeKieKEesAr---k~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEI 642 (747)
.-|..+|+.|+++-+.|+++..++++.-. +-|++-.+-.+..+.|-.+|+.|++.+.+ -|---.+.++.|-||-
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~---kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN---KVDRSIALLDNLNSER 2086 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCC
T ss_conf 8299999999999999999999999999999999999999999999999999999999999---9999999998621131
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 56653599999972
Q 004517 643 SVICQDVRLLKEKF 656 (747)
Q Consensus 643 SVIceDV~~LKekv 656 (747)
.---+.+..|+.+.
T Consensus 2087 ~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2087 GRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 32999999999999
No 6
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=1.00 E-value=1 Score=27.16 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=34.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999861243028889998853022412245674410
Q 004517 6 VYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTE 43 (747)
Q Consensus 6 Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~e 43 (747)
-.+.|+||||.++.-.+|-+--.-.-|.|.|+...|..
T Consensus 7 ~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 7 KLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 99999987899989999999999299899999999835
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=24.63 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=21.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 334589982135566567555645202788888766564101
Q 004517 75 RRLSDRPSDEIAEHEEHEELNTFRRRRNRSQPSSLEQGSITT 116 (747)
Q Consensus 75 ~~~~~~p~d~~~~~ee~~~~~~~~~~~n~~~~~s~~~gs~~~ 116 (747)
++..+.|. |+--+-+.---+-.+.++|.+.-.|-|+|+--|
T Consensus 130 ~~~~~~pP-HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKT 170 (1080)
T 2dfs_A 130 QNMGDMDP-HIFAVAEEAYKQMARDERNQSIIVSGESGAGKT 170 (1080)
T ss_dssp CCGGGSCC-CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHH
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 87788998-297889999999873599938997388788752
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=23.48 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3334589982135566567555645202788888766564101
Q 004517 74 LRRLSDRPSDEIAEHEEHEELNTFRRRRNRSQPSSLEQGSITT 116 (747)
Q Consensus 74 ~~~~~~~p~d~~~~~ee~~~~~~~~~~~n~~~~~s~~~gs~~~ 116 (747)
+.+..+.|. |+--+-+.---+-.+.++|.+.-.|-++|+--|
T Consensus 142 ~~~~~~~~P-Hi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKT 183 (1184)
T 1i84_S 142 GKKRHEMPP-HIYAIADTAYRSMLQDREDQSILCTGESGAGKT 183 (1184)
T ss_dssp SCCSSSSCC-CHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTT
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 865456896-375667899998773589967997268888741
No 9
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=1.00 E-value=1 Score=19.06 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 24448999999865356778999999999999999999999999------999703513788299999999999971124
Q 004517 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAK------AAAVRGGLDIFVKMDELKQMLAHAKEANDM 524 (747)
Q Consensus 451 sIesLEe~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK------~EAs~aG~DILaKVEELKeML~~AKEANDm 524 (747)
+++.|.+.+.+...-+...-..+..+.+|+.+=+-..+..+..- ..+......+..++.++++-+..|.++|..
T Consensus 435 g~~~l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~ 514 (704)
T 2xs1_A 435 GIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQ 514 (704)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55579999999999999999999999999998798899999986065777983888899999999999999999824899
Q ss_pred CCHHH
Q ss_conf 20011
Q 004517 525 HAGEI 529 (747)
Q Consensus 525 hAGEV 529 (747)
...-+
T Consensus 515 v~~~~ 519 (704)
T 2xs1_A 515 VKECY 519 (704)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 10
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=1.00 E-value=1 Score=17.68 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999989999999998873--8--9999999999999999999987999999999788999974128330
Q 004517 560 VLDEMRETLEARLAAAEDMRKEAEEEKFE--K--EESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVV 635 (747)
Q Consensus 560 IIDEMr~TLEaRLAaAeeEr~AAEeeKie--K--EesArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IV 635 (747)
-+++....|..+|.....-|..||.++-. . |.+.-.++ ++.--| |..+.+.-..--..|-+|++-|.|.-.++
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF-eEAN~M--Va~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF-DEANNL--VADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH-HHHHHH--HHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 547999999999999999899999999889989999899999-999899--99999999999998999999987799999
Q ss_pred CCCCCHHHH
Q ss_conf 024520456
Q 004517 636 DSLQGEISV 644 (747)
Q Consensus 636 DsLQGEISV 644 (747)
++||..+.-
T Consensus 120 ~~lq~QL~~ 128 (135)
T 2e7s_A 120 DTLTLQLKN 128 (135)
T ss_dssp ---------
T ss_pred HHHHHHHHH
T ss_conf 999999999
Done!