Query 004517
Match_columns 747
No_of_seqs 29 out of 31
Neff 1.9
Searched_HMMs 13730
Date Tue Mar 26 18:03:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004517.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1825-1829//hhsearch_scop/004517hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mn3a_ a.5.2.4 (A:) Vacuolar 93.2 0.039 2.8E-06 30.6 3.7 40 3-42 12-51 (54)
2 d1wgla_ a.5.2.4 (A:) Toll-inte 92.4 0.11 7.6E-06 27.6 5.0 43 4-46 10-52 (59)
3 d1otra_ a.5.2.4 (A:) Protein C 7.2 44 0.0032 9.1 3.0 39 5-43 6-44 (49)
4 d1yzma1 a.2.19.1 (A:456-501) F 3.4 1.1E+02 0.0082 6.2 4.9 42 501-548 1-42 (46)
5 d1y74b1 a.194.1.1 (B:83-132) P 3.2 1.1E+02 0.0078 6.4 -0.3 13 520-532 38-50 (50)
6 d2csba1 a.60.2.4 (A:351-409) T 3.1 1.3E+02 0.0091 5.9 1.8 48 448-495 10-57 (59)
7 d1ybza1 a.130.1.1 (A:2-75) mon 2.9 1.4E+02 0.01 5.6 7.9 67 550-616 3-74 (74)
8 d1ucra_ a.4.5.45 (A:) Dissimil 2.6 1.6E+02 0.011 5.2 2.2 36 7-52 24-59 (74)
9 d1xkpa1 a.243.1.3 (A:73-269) O 2.6 1.6E+02 0.012 5.2 6.5 53 505-571 25-77 (197)
10 d1bmlc3 d.15.5.1 (C:285-372) S 2.4 1.7E+02 0.012 4.9 1.7 21 144-164 39-59 (88)
No 1
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.25 E-value=0.039 Score=30.60 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4799999986124302888999885302241224567441
Q 004517 3 FNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLT 42 (747)
Q Consensus 3 fk~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ 42 (747)
|++++..|++|||.+|.-++|+|-....-++|+|+.-.|.
T Consensus 12 ~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~ 51 (54)
T d1mn3a_ 12 RKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999998879997999999999929977999999871
No 2
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.43 E-value=0.11 Score=27.56 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 7999999861243028889998853022412245674410234
Q 004517 4 NAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILP 46 (747)
Q Consensus 4 k~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ev~P 46 (747)
.+..+.|++|||.+|.-++++|-+...-++|.|+...|.=--|
T Consensus 10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~ 52 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 9999999998788779999999999399779999999855787
No 3
>d1otra_ a.5.2.4 (A:) Protein Cue2 (hypothetical protein YKL090W) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.17 E-value=44 Score=9.06 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=33.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 999999861243028889998853022412245674410
Q 004517 5 AVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTE 43 (747)
Q Consensus 5 ~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~e 43 (747)
+-..-|++|||.|-..-|..--.|...|.|-..+..|.|
T Consensus 6 sklsilmdmfpaisksklqvhllennndldltiglllke 44 (49)
T d1otra_ 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCEEEEEEEC
T ss_conf 888999987066513343200011488623010011322
No 4
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.41 E-value=1.1e+02 Score=6.20 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 513788299999999999971124200110210358999999999985
Q 004517 501 GLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLL 548 (747)
Q Consensus 501 G~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~ 548 (747)
|+-+|--.+-+|.++..||+++.+ -|-.+|.--.++||.-+.
T Consensus 1 ~nPllqQi~~ik~yI~QAk~a~R~------dEV~~Le~NLreLq~e~~ 42 (46)
T d1yzma1 1 GSPLLQQIHNITSFIRQAKAAGRM------DEVRTLQENLRQLQDEYD 42 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHH
T ss_conf 980899999999999999982451------899999999999999998
No 5
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.18 E-value=1.1e+02 Score=6.37 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.2
Q ss_pred HHCCCCCHHHHCC
Q ss_conf 7112420011021
Q 004517 520 EANDMHAGEIYGE 532 (747)
Q Consensus 520 EANDmhAGEVyGE 532 (747)
.+-|.+|.++|||
T Consensus 38 ~aHD~VA~k~Y~e 50 (50)
T d1y74b1 38 QTHDVVAHEVYSD 50 (50)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9989998884169
No 6
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.13 E-value=1.3e+02 Score=5.89 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 311244489999998653567789999999999999999999999999
Q 004517 448 QICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKA 495 (747)
Q Consensus 448 q~~sIesLEe~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~ 495 (747)
|..+++.-++.|+.-.+---.|-+.+|.|-.|.++-.|.|++-+-|.+
T Consensus 10 hglspdaadeliehfesiagilatdleeiermyeegrlseeayraave 57 (59)
T d2csba1 10 HGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVE 57 (59)
T ss_dssp HCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 289953489999999999999980299999999804422999977760
No 7
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=2.89 E-value=1.4e+02 Score=5.59 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0897545779999999999999999899999999988-----738999999999999999999998799999
Q 004517 550 LSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEK-----FEKEESARASLAEQEVIMEKVVQESKLLQQ 616 (747)
Q Consensus 550 LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeK-----ieKEesArk~L~EQEalM~kVvEESrkLqq 616 (747)
|.+=|.+-=.|=++|-.-|..|...+.+--..-.+.- -++|..-..-+.+-+.+...++..|+.+||
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~~~~~~i~dp~RE~~il~~~~~i~~if~~I~~~S~~~Qk 74 (74)
T d1ybza1 3 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKILEVSKDVQR 74 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999999885989998489999999999999999999999998629
No 8
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=2.62 E-value=1.6e+02 Score=5.22 Aligned_cols=36 Identities=31% Similarity=0.694 Sum_probs=28.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999861243028889998853022412245674410234556798
Q 004517 7 YRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEKS 52 (747)
Q Consensus 7 yr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ev~Pf~s~~~ 52 (747)
|.-+..+||..-+|-.|-++. ..|-.+++-|||--+
T Consensus 24 fkDf~k~~Pd~k~R~vKK~~~----------~lV~e~~L~ywSSGS 59 (74)
T d1ucra_ 24 FNDFTDLFPDMKQREVKKILT----------ALVNDEVLEYWSSGS 59 (74)
T ss_dssp HHHHHHHCTTSCHHHHHHHHH----------HHHHTTSEEEEEETT
T ss_pred HHHHHHHCCCCCHHHHHHHHH----------HHHCCCEEEEECCCC
T ss_conf 888998788726899999999----------985116278973798
No 9
>d1xkpa1 a.243.1.3 (A:73-269) Outer membrane protein yopN (LcrE) {Yersinia pestis [TaxId: 632]}
Probab=2.58 E-value=1.6e+02 Score=5.17 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8829999999999997112420011021035899999999998520897545779999999999999
Q 004517 505 FVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEAR 571 (747)
Q Consensus 505 LaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaR 571 (747)
+.+.+++++++.+-+..+.+. ...|+.+|.+.+.+-...+.++.+++..+..+
T Consensus 25 ~e~~~kl~~L~~~l~~~~~~t--------------~~ql~~~L~q~f~d~S~~~laL~~l~~~~~~~ 77 (197)
T d1xkpa1 25 LEQKQNVSELLSLLSNSPNIS--------------LSQLKAYLEGKSEEPSEQFKMLCGLRDALKGR 77 (197)
T ss_dssp CCHHHHHHHHHHHHSSCSSCC--------------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 044678999999871678688--------------99999999876999689999999999885378
No 10
>d1bmlc3 d.15.5.1 (C:285-372) Streptokinase {Streptococcus equisimilis [TaxId: 119602]}
Probab=2.43 E-value=1.7e+02 Score=4.95 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 122468999888534798864
Q 004517 144 VSQSYDPNDSSGLLYGNPESE 164 (747)
Q Consensus 144 ~~~~yd~nd~~~~~y~n~ese 164 (747)
.-+.|||.|...++|.|-..-
T Consensus 39 frdlydprdkakllynnldaf 59 (88)
T d1bmlc3 39 FRDLYDPRDKAKLLYNNLDAF 59 (88)
T ss_dssp BCCSSCTTTTSCCBCSCCGGG
T ss_pred HHHHCCCHHHHHHHHHCCCHH
T ss_conf 466159167778877264201
Done!