Your job contains 1 sequence.
>004518
MPIKLFPNLRLLNPPLSATRFPSMNLKPSVNSSRAIPAFRRIFPFKLKYLGLPTRVNSQQ
QQQQQQLGLRKLSTRPFRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSF
HSNKRFSKDDDVSDFRKGSGRENRGSYSMKRRRKSDSDDSYDSSRRGNRNSVNSFSRNNI
SNNTSRFSRRSNSELEAGNVGRKTRFSNDDENDVGEERRRGMSGIRDLLSEEVSDNDDDD
DDSVLRNNARSLIGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYE
KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLV
ICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRD
HIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVR
QICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKV
LVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARG
VDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKA
PVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYKLVELANEYSRSM
GLDNPPAIPKLVLGKMGLRNIPGLRSK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004518
(747 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2159517 - symbol:PDE340 "PIGMENT DEFECTIVE 340... 2026 2.2e-231 2
TAIR|locus:2159527 - symbol:STRS2 "STRESS RESPONSE SUPPRE... 1922 1.6e-198 1
TAIR|locus:2038431 - symbol:AT1G63250 species:3702 "Arabi... 1456 3.8e-149 1
TAIR|locus:2054688 - symbol:AT2G07750 species:3702 "Arabi... 1441 1.5e-147 1
UNIPROTKB|Q2KEF1 - symbol:MGCH7_ch7g1085 "Putative unchar... 829 1.0e-82 1
ASPGD|ASPL0000028276 - symbol:AN5623 species:162425 "Emer... 730 3.2e-72 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 683 3.1e-67 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 663 4.1e-65 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 658 1.4e-64 1
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 655 2.9e-64 1
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 646 2.6e-63 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 644 4.2e-63 1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 643 5.4e-63 1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 643 5.4e-63 1
POMBASE|SPAC1093.05 - symbol:SPAC1093.05 "ATP-dependent R... 642 6.9e-63 1
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 639 1.4e-62 1
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 636 3.0e-62 1
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica... 635 3.8e-62 1
GENEDB_PFALCIPARUM|PF13_0037 - symbol:PF13_0037 "DEAD box... 635 3.8e-62 1
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 635 3.8e-62 1
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 635 3.8e-62 1
UNIPROTKB|Q8IEP2 - symbol:PF13_0037 "DEAD box helicase, p... 635 3.8e-62 1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 634 4.8e-62 1
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 634 4.8e-62 1
SGD|S000003570 - symbol:HCA4 "DEAD box RNA helicase" spec... 633 6.2e-62 1
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 632 7.9e-62 1
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 629 1.6e-61 1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 629 1.6e-61 1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 629 1.6e-61 1
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 628 2.1e-61 1
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 628 2.1e-61 1
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 628 2.1e-61 1
UNIPROTKB|E9PIF2 - symbol:DDX10 "Probable ATP-dependent R... 619 1.9e-60 1
UNIPROTKB|Q13206 - symbol:DDX10 "Probable ATP-dependent R... 619 2.0e-60 1
MGI|MGI:1924841 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) bo... 618 2.7e-60 1
ASPGD|ASPL0000061778 - symbol:AN0589 species:162425 "Emer... 617 3.1e-60 1
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 614 8.2e-60 1
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 613 9.7e-60 1
RGD|1308990 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box po... 613 1.0e-59 1
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 607 3.5e-59 1
POMBASE|SPBC691.04 - symbol:SPBC691.04 "mitochondrial ATP... 602 1.2e-58 1
UNIPROTKB|F1P0I3 - symbol:DDX10 "Probable ATP-dependent R... 599 4.7e-58 1
UNIPROTKB|Q5ZJF6 - symbol:DDX10 "Probable ATP-dependent R... 599 4.7e-58 1
UNIPROTKB|A4RGU2 - symbol:DBP4 "ATP-dependent RNA helicas... 596 5.1e-58 1
ZFIN|ZDB-GENE-071022-2 - symbol:ddx10 "DEAD (Asp-Glu-Ala-... 597 7.9e-58 1
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 586 5.9e-57 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 585 7.5e-57 1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 581 2.0e-56 1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 581 2.0e-56 1
TAIR|locus:2160225 - symbol:AT5G54910 species:3702 "Arabi... 579 3.3e-56 1
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 548 3.3e-55 2
ASPGD|ASPL0000054998 - symbol:AN0894 species:162425 "Emer... 567 6.1e-55 1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 559 4.3e-54 1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 554 1.5e-53 1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 550 3.8e-53 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 550 3.8e-53 1
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 520 8.7e-53 2
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 520 8.7e-53 2
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 545 1.3e-52 1
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 542 2.7e-52 1
UNIPROTKB|Q5ZLN8 - symbol:DDX55 "ATP-dependent RNA helica... 541 3.5e-52 1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 540 4.4e-52 1
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 514 7.7e-52 2
UNIPROTKB|F1NJA0 - symbol:DDX55 "ATP-dependent RNA helica... 537 9.2e-52 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 537 9.2e-52 1
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 531 4.0e-51 1
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 531 4.0e-51 1
UNIPROTKB|Q9NQI0 - symbol:DDX4 "Probable ATP-dependent RN... 498 8.7e-51 2
UNIPROTKB|D6RDK4 - symbol:DDX4 "Probable ATP-dependent RN... 498 8.7e-51 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 527 1.1e-50 1
UNIPROTKB|F1MW45 - symbol:DDX55 "ATP-dependent RNA helica... 526 1.3e-50 1
UNIPROTKB|Q4R5S7 - symbol:DDX4 "Probable ATP-dependent RN... 497 1.6e-50 2
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 524 2.2e-50 1
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 524 2.2e-50 1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 526 2.5e-50 1
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 523 2.8e-50 1
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 523 2.8e-50 1
UNIPROTKB|Q2NL08 - symbol:DDX55 "ATP-dependent RNA helica... 520 5.8e-50 1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 503 6.0e-50 2
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 499 6.0e-50 2
UNIPROTKB|Q3MSQ8 - symbol:ddx4 "Probable ATP-dependent RN... 492 6.7e-50 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 521 7.0e-50 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 519 7.4e-50 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 519 7.4e-50 1
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 518 9.5e-50 1
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 504 1.1e-49 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 517 1.2e-49 1
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 517 1.2e-49 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 516 1.5e-49 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 516 1.5e-49 1
SGD|S000002602 - symbol:MSS116 "DEAD-box protein involved... 516 1.5e-49 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 504 2.0e-49 2
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 514 2.5e-49 1
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 503 2.6e-49 2
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 512 4.1e-49 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 511 5.2e-49 1
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 511 5.2e-49 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 511 5.2e-49 1
FB|FBgn0037561 - symbol:CG9630 species:7227 "Drosophila m... 510 6.7e-49 1
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 510 6.7e-49 1
WARNING: Descriptions of 821 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 2026 (718.2 bits), Expect = 2.2e-231, Sum P(2) = 2.2e-231
Identities = 382/498 (76%), Positives = 446/498 (89%)
Query: 255 LDKENGGMSVAISSP-GKH----DSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEAT 309
+ K +V P G+H DS++S++RFDQ +S LSLK IKDAG+E MT+VQEAT
Sbjct: 353 IKKAASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEAT 412
Query: 310 LPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT 369
LP++L+GKDVLAKAKTGTGKTVAFLLP+IE VIKSPP RD R+PPI+VLV+CPTRELA+
Sbjct: 413 LPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELAS 472
Query: 370 QAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFA 429
QAA EA+TLLKYHPSIGVQVVIGGT+L EQ+RMQ NPCQILVATPGRL+DHIENT+GFA
Sbjct: 473 QAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFA 532
Query: 430 TRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKR 489
TRLMGVKVLVLDEADHLLDMGFR+DIE+IIAAVPKQRQT LFSATVPEEVRQICH+ALKR
Sbjct: 533 TRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKR 592
Query: 490 DHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMV 549
DHEFIN V+EGS ETH++V QM+++A LD HF LL+VLL+EH+ADN +YKV++FCTTAMV
Sbjct: 593 DHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMV 652
Query: 550 TRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLV 609
TR+VADLL +L LNVREIHSRKPQSYRTRVSDEFRKSK +ILVTSDVSARGVDYPDV+LV
Sbjct: 653 TRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLV 712
Query: 610 IQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDT 669
+Q+GLPSDREQYIHRLGRTGRKGKEG+G+LLLAPWEE+F+S++KDLPI K+P+P +DP+
Sbjct: 713 VQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPIDPEA 772
Query: 670 KKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIP 729
K+V++ LS VEMKNKEAAYQAWLGYY S K + RD +LVELANE+SRSMGLD+PPAIP
Sbjct: 773 VKRVQKGLSQVEMKNKEAAYQAWLGYYKSQKMIARDTTRLVELANEFSRSMGLDSPPAIP 832
Query: 730 KLVLGKMGLRNIPGLRSK 747
K VLGKMGL+N+PGLR+K
Sbjct: 833 KNVLGKMGLKNVPGLRTK 850
Score = 229 (85.7 bits), Expect = 2.2e-231, Sum P(2) = 2.2e-231
Identities = 55/116 (47%), Positives = 69/116 (59%)
Query: 19 TRFPSMNLKPSVNSSRAIPAFRRIFPFKLKYLGLPTRVNSXXXXXXXXLGLRKLSTRPFR 78
TR SMN + S R++P + FPF+LKY+GL +RVN STRP R
Sbjct: 19 TRLASMNSGALIYSFRSVPVLSKAFPFRLKYIGLGSRVN--------------FSTRPER 64
Query: 79 PAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKRFSKDDDVSD 134
+ EF RR GEIR SK+LI+DEAELSDWVSDLRT S +F+ D+D +D
Sbjct: 65 --SQPEFARRSGAGGEIRASKSLIEDEAELSDWVSDLRTSSLRG--KFTSDEDNAD 116
Score = 48 (22.0 bits), Expect = 3.1e-212, Sum P(2) = 3.1e-212
Identities = 25/78 (32%), Positives = 34/78 (43%)
Query: 70 RKLSTRPFRPAASSEFG-RRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNK-RFS 127
R+ S P + G R GSR G ++G + E+ SD DS S + R
Sbjct: 163 RRTSGEPADSFGNKRLGDREGSRNGRVQGKSS----ESSFRGR-SDRNVDSGSSFRGRSD 217
Query: 128 KD-DDVSDFRKGSGRENR 144
K+ D S FR GR +R
Sbjct: 218 KNVDSGSSFR---GRNDR 232
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 1922 (681.6 bits), Expect = 1.6e-198, P = 1.6e-198
Identities = 358/473 (75%), Positives = 425/473 (89%)
Query: 273 DSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVA 332
DS++S++RFDQ +S L+LKGI+DAG++ MT+VQEATLP++L+GKD+LAKAKTGTGKTVA
Sbjct: 74 DSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVA 133
Query: 333 FLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIG 392
FLLPSIE VIK+PP RD R PPI+VLV+CPTRELA QAA EA+ LLKYHPSIGVQVVIG
Sbjct: 134 FLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIG 193
Query: 393 GTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFR 452
GT+L EQ+R+Q +PCQILVATPGRL+DHI+NT+GFATRLMGVKVLVLDEADHLLDMGFR
Sbjct: 194 GTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFR 253
Query: 453 KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
++IE+IIAAVPKQRQT LFSATV +EVRQICH+ALKRDHEF+N V+EG+ ETH++V QM+
Sbjct: 254 REIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMY 313
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
++A LD HF LLY LL++H+ DN YKV++FCTTAMVTR+VADLLG+L LNVREIHSRKP
Sbjct: 314 MIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKP 373
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
QSYRTRVSDEFRKSK +ILVTSDVSARGVDYPDV+LV+Q+GLPSDREQYIHRLGRTGRKG
Sbjct: 374 QSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKG 433
Query: 633 KEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
KEG+G+LLLAPWEE+FLS++KDLPI K+ +P +D + KKV++ L VEM NKEAAYQAW
Sbjct: 434 KEGEGVLLLAPWEEYFLSSVKDLPITKSSLPPIDHEAVKKVQKGLIQVEMTNKEAAYQAW 493
Query: 693 LGYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIPKLVLGKMGLRNIPGLR 745
LGYY S KK+ RD +LVELANE+SRSMGL PPAIP +LGKMGL+N+PG+R
Sbjct: 494 LGYYKSQKKIARDTTRLVELANEFSRSMGLSIPPAIPVNILGKMGLKNVPGIR 546
>TAIR|locus:2038431 [details] [associations]
symbol:AT1G63250 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 EMBL:AC022355 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 UniGene:At.52694 ProtClustDB:CLSN2713541
IPI:IPI00538833 PIR:C96658 RefSeq:NP_176514.1 UniGene:At.36158
ProteinModelPortal:Q9C8S9 SMR:Q9C8S9 PaxDb:Q9C8S9 PRIDE:Q9C8S9
EnsemblPlants:AT1G63250.1 GeneID:842631 KEGG:ath:AT1G63250
GeneFarm:1027 TAIR:At1g63250 InParanoid:Q9C8S9 OMA:TSSRAHI
PhylomeDB:Q9C8S9 Genevestigator:Q9C8S9 GermOnline:AT1G63250
Uniprot:Q9C8S9
Length = 798
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 274/474 (57%), Positives = 364/474 (76%)
Query: 272 HDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTV 331
HDS S RFD+ IS L+LK + +G KMT VQ+ATL L GKD L KAKTGTGK++
Sbjct: 321 HDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSM 380
Query: 332 AFLLPSIEVVIKSPPVDRDQRR-PPILVLVICPTRELATQAATEASTLLKYHPSIGVQVV 390
AFLLP+IE V+K+ + + PI L++CPTRELA+Q A E LLK+H IGVQ +
Sbjct: 381 AFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTL 440
Query: 391 IGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG 450
IGGTR L+Q+R+++ PCQIL+ATPGRL DHIEN +G +RLM +K+ ++DEAD LLD+G
Sbjct: 441 IGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLG 500
Query: 451 FRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQ 510
FR+D+EKII +P+QRQ+LLFSAT+P+EVR++ + LKRDH +I+T+ G ETH++VRQ
Sbjct: 501 FRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQ 560
Query: 511 MHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSR 570
+VAP + HF L+ LL+EH+ + P+YK++VFC+T MVT ++ LL E+KLNVREIH+R
Sbjct: 561 SCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHAR 620
Query: 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR 630
KPQ +RTRVSDEF++S LILVTSDVSARG++YPDVTLVIQVG+PSDREQYIHRLGRTGR
Sbjct: 621 KPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGR 680
Query: 631 KGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQ 690
+GK G+G+LL+APWE +FL +KDLP+ P P +D K +V+++++ ++ KEAAY
Sbjct: 681 EGKGGEGLLLIAPWERYFLDELKDLPLEPIPAPDLDSIVKHQVDQSMAKIDTSIKEAAYH 740
Query: 691 AWLGYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIPKLVLGKMGLRNIPGL 744
AWLGYYNS ++ GRDK L ELAN + S+GL+ PPA+ + KMGL+ I G+
Sbjct: 741 AWLGYYNSVRETGRDKTTLAELANRFCHSIGLEKPPALFRRTAVKMGLKGISGI 794
>TAIR|locus:2054688 [details] [associations]
symbol:AT2G07750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AC004483 IPI:IPI00546939 PIR:E84488
RefSeq:NP_178818.1 UniGene:At.52694 ProteinModelPortal:O80792
SMR:O80792 PaxDb:O80792 PRIDE:O80792 EnsemblPlants:AT2G07750.1
GeneID:815422 KEGG:ath:AT2G07750 GeneFarm:994 TAIR:At2g07750
InParanoid:O80792 OMA:FRKTALK PhylomeDB:O80792
ProtClustDB:CLSN2713541 Genevestigator:O80792 GermOnline:AT2G07750
Uniprot:O80792
Length = 845
Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
Identities = 275/491 (56%), Positives = 368/491 (74%)
Query: 255 LDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLL 314
L K+ +V HDS S RFD+ IS L+LK + +G KMT VQ+ATL L
Sbjct: 351 LSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECL 410
Query: 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR-PPILVLVICPTRELATQAAT 373
GKD L KAKTGTGK++AFLLP+IE V+K+ + + PI VL++CPTRELA+Q A
Sbjct: 411 DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAA 470
Query: 374 EASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLM 433
E LLK H IGVQ +IGGTR L+Q+R+++ PCQIL+ATPGRL DHIEN +G +RLM
Sbjct: 471 EGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLM 530
Query: 434 GVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEF 493
+K+ ++DEAD LLD+GF++D+EKII +P+QRQ+LLFSAT+P+EVR++ + LKRDH +
Sbjct: 531 ALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSY 590
Query: 494 INTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMV 553
I+T+ G ETH++V+Q +VAP + HF L+ LL+EH+ + P+YK++VFC+T MVT ++
Sbjct: 591 IDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLM 650
Query: 554 ADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVG 613
LL E+KLNVREIH+RKPQ +RT VSDEF++S LILVTSDVSARG++YPDVTLVIQVG
Sbjct: 651 YTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVG 710
Query: 614 LPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKV 673
+PSDREQYIHRLGRTGR+GK G+G+LL+APWE +FL +KDLP+ P P +D K +V
Sbjct: 711 IPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLEPIPAPDLDSRVKHQV 770
Query: 674 ERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIPKLVL 733
+++++ ++ KEAAY AWLGYYNS ++ GRDK L ELAN + S+GL+ PPA+ +
Sbjct: 771 DQSMAKIDTSIKEAAYHAWLGYYNSVRETGRDKTTLAELANRFCHSIGLEKPPALFRRTA 830
Query: 734 GKMGLRNIPGL 744
KMGL+ I G+
Sbjct: 831 VKMGLKGISGI 841
>UNIPROTKB|Q2KEF1 [details] [associations]
symbol:MGCH7_ch7g1085 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
GO:GO:0008026 ProteinModelPortal:Q2KEF1 Uniprot:Q2KEF1
Length = 568
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 206/493 (41%), Positives = 286/493 (58%)
Query: 267 SSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGK-DVLAKAKT 325
+SP D SE+ D + ++ +D +++M+ VQ AT+ L+ + DVLA+AKT
Sbjct: 70 NSPRFAD-LASENLLDPVLLDTIT----QDLKFDRMSPVQAATIRHLIADRGDVLAQAKT 124
Query: 326 GTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSI 385
GTGKT+AFLLP+++ +++ P R + VLVI PTRELA Q A EA LL+ P
Sbjct: 125 GTGKTIAFLLPALQTLLRRP----SSRGNDVSVLVISPTRELALQIAKEAEALLQRLPQY 180
Query: 386 GVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADH 445
V IGGT EQ+R+ CQIL+ TPGRL DH+E + A L V VLDEAD
Sbjct: 181 KVCTAIGGTNKDAEQRRILRG-CQILIGTPGRLMDHLEEQS-VAEMLQSVDTFVLDEADR 238
Query: 446 LLDMGFRKDIEKIIAAVPKQ----RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGS 501
LLDMGF ++KI+AA+P + RQ +LFSATV E V ++ IAL D++FI+T+ +G
Sbjct: 239 LLDMGFMPQLKKIVAALPNRQKVPRQGMLFSATVAEHVAKVSSIALAPDYKFISTIPKGE 298
Query: 502 EETHEQVRQMHLV-AP--LDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAMVTRMVADL 556
THE+V Q HL+ P D L+ L E A+ E+K +VF TA + A +
Sbjct: 299 SNTHERVPQ-HLIEVPNFSDTMAALVGALRHELAESANQDEFKAIVFAPTAALVDFYAAV 357
Query: 557 LGELKLNVR--EIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL 614
L L R +HSR QS RTRV++++RKS +LV +DV ARG+D+P VT V QVGL
Sbjct: 358 LEGLPNMPRILTLHSRMTQSKRTRVTEDYRKSNATVLVATDVVARGMDFPSVTNVFQVGL 417
Query: 615 PSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFF-LSTIKDLPILKAPVPSVDPDTKKKV 673
P D+E YIHRLGRT R G EG+G +++ E +F +KD + P D ++
Sbjct: 418 PMDKESYIHRLGRTARAGAEGRGTFIVSAAESYFPRKVMKDFTFIDQPA---DLSALGEI 474
Query: 674 ERALSHVEMKNKEAAYQAWLGYYNS-NKKVGRDKYKLVELANEYS-RSMGLDNPPAIPKL 731
+ +E K AYQ+WLG+Y K +G D +LV AN+ + G P + K
Sbjct: 475 KEVAPKLEPYGK--AYQSWLGFYKVFTKPLGWDNEQLVREANKLALEGFGAPEVPPLNKS 532
Query: 732 VLGKMGLRNIPGL 744
+GKMGL+ + GL
Sbjct: 533 TVGKMGLKGVKGL 545
>ASPGD|ASPL0000028276 [details] [associations]
symbol:AN5623 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001305
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268799
ProteinModelPortal:C8VFX5 EnsemblFungi:CADANIAT00003447 OMA:STIGKMG
Uniprot:C8VFX5
Length = 567
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 178/470 (37%), Positives = 269/470 (57%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGK-DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR 349
L+ + G+E M+ VQ+ L L + D L +AKTGTGKTVAFLLP++ +I+
Sbjct: 23 LQALNVLGFEYMSPVQQRVLTELPTWRSDCLVQAKTGTGKTVAFLLPALHCLIQG---QS 79
Query: 350 DQRRPPILVLVICPTRELATQAATEASTLL-KYHPSIGVQVVIGGTRLALEQKR-MQANP 407
RR + +L+I PTRELA Q A L + + + +GGT A R M +P
Sbjct: 80 QVRRGQVAILIITPTRELAQQIAKSCDELTSQLSRPLECHIAVGGTARASAHSRFMNGDP 139
Query: 408 CQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQR- 466
ILVATPGRL+D++ + A +L ++ LVLDEAD +L+ GF D+++I+ +P +
Sbjct: 140 -SILVATPGRLKDYLSESET-AEKLKDIQTLVLDEADTMLETGFLADVKQILKLIPSKST 197
Query: 467 --QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH-FPL 523
Q + FSAT+P +V+ + + L + I+TV++ THE+V Q +++ P F
Sbjct: 198 GWQGMCFSATLPPKVKDVVSVVLNPGYTSISTVDKNEPPTHERVPQYYVLMPSVAETFTT 257
Query: 524 LYVLLREHVADNPEYKVLVFCTTAMVTRMVADLL--GELKLNVREIHSRKPQSYRTRVSD 581
L LL N K++VF TA + + G L V EIHSR QS RTR +
Sbjct: 258 LSSLLAHESKKNT--KIIVFGVTANMVALSHSAFANGLTPLKVFEIHSRLSQSARTRTTS 315
Query: 582 EFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLL 641
+F+++ IL SDV RG+D+P+V LV+QVGLPS+ EQY+HR+GRT R G +G+ ++LL
Sbjct: 316 QFKEADAGILFASDVIGRGMDFPNVDLVVQVGLPSNAEQYVHRVGRTARAGNDGRAVILL 375
Query: 642 APWEEFFLSTIKDLPILKAP-VPSVDPDTKK---KVERALSHVEMKNKEAAYQAWLGYYN 697
E FFL + LPI P S+ + V +A+ V+ K+ AY +++G++
Sbjct: 376 TESESFFLKANRHLPIQPHPDASSILANATSCSPAVTQAMYAVDETTKQRAYSSYIGFFA 435
Query: 698 SN---KKVGRDKYKLVELANEYS-RSMGLDNPPAIPKLVLGKMGLRNIPG 743
+ K++ DK LV+LANE + + M PP + K ++GKMGL+ +PG
Sbjct: 436 GSGLMKQLRLDKPGLVQLANELAIKGMACPEPPPMDKKIVGKMGLKGVPG 485
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 165/455 (36%), Positives = 269/455 (59%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F I + K I++ G++KMT +Q ++ LL+GKD+L A+TG+GKT+AFL+P+IEV
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++KS R+ V++I PTRELA Q A L+KYH +VIGG E+
Sbjct: 181 LVKSNFKPRNGTG----VIIISPTRELALQIYGVARELMKYHTQTH-GIVIGGASKKPEE 235
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+R++ +LVATPGRL DH++NT GF T+ +K L++DEAD +L++GF +++ +II
Sbjct: 236 ERLEKG-VNLLVATPGRLLDHLQNTKGFITK--NLKCLIIDEADRILEVGFEEEMHQIIK 292
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
VPK RQT+LFSAT +V I ++L ++ +E T E + Q ++V P +
Sbjct: 293 KVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERR 352
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580
F LLY L+++++ K++VF ++ + A+LL + + V E+H R+ Q RT
Sbjct: 353 FLLLYTFLKKNLSK----KIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTF 408
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK-GKEGQGIL 639
EF ++ IL+ +DV+ARG+D P V +IQ P D ++YIHR+GRT R GK+G+ +L
Sbjct: 409 YEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALL 468
Query: 640 LLAPWEEFFLSTIK--DLPILKAPVP-SVDPDTKKKVERALS-HVEMKNKEA-AYQAWLG 694
L P E FL +K +P+ + P S + + ++E+ +S + + N AY+A++
Sbjct: 469 FLLPKELGFLKYLKLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSARDAYKAYIC 528
Query: 695 YYNSNKKVGRDKYKLVELANE-YSRSMGLDNPPAI 728
Y S+ +D + + L + +++ G +PP +
Sbjct: 529 AYASHSL--KDIFDVNALDLQCVAKAFGFLDPPKV 561
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 166/458 (36%), Positives = 263/458 (57%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F + +S +L+GIK+ G+E MT +Q+ T+P LL G+DVL AKTG+GKT+AFL+P+IE
Sbjct: 129 KFTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 188
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
++ R + R V+V+ PTRELA Q A LL H S +VIGG E
Sbjct: 189 MLSAL----RFKPRNGTGVIVVSPTRELALQIFGVARELLTAH-SQTYGIVIGGANRRAE 243
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+++ +L+ATPGRL DH++NT GF + +K LV+DEAD +L++GF ++ +II
Sbjct: 244 AEKLTKG-VNLLIATPGRLLDHLQNTPGFVFK--NLKTLVIDEADRILEVGFEDEMRQII 300
Query: 460 AAVPKQ-RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
+P + RQT+LFSAT +V + I+L+ +IN T E + Q +++ D
Sbjct: 301 KILPNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEAD 360
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
F LL+ L+ N + K++VF ++ + A+LL + L V ++H ++ Q RT
Sbjct: 361 KRFLLLFSFLKR----NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTN 416
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG- 637
EF +K +L+ +DV+ARG+D P V +IQ P D YIHR+GRT R G G+G
Sbjct: 417 TFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTAR-GANGRGR 475
Query: 638 -ILLLAPWEEFFLSTIKD--LPILKAPVPSVD-PDTKKKVERALSHVEMKNKEA--AYQA 691
++ L P E FL +K+ +P+++ P+ + + ++E+ +S NK A Y++
Sbjct: 476 SLMFLQPSEVGFLKYLKEARVPVVEFDFPAKKIVNVQSQLEKLISQNYYLNKSAKDGYRS 535
Query: 692 WLGYYNSNK-KVGRDKYKLVELANEYSRSMGLDNPPAI 728
+L Y S+ + D +KL +L + ++S G PP I
Sbjct: 536 YLQAYASHSLRSVFDVHKL-DLV-KVAKSFGFSTPPRI 571
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 169/475 (35%), Positives = 270/475 (56%)
Query: 274 SFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF 333
S M+ F+ S+S + K IK+ G+ +MT +Q +P L+ G+DVL A+TG+GKT+AF
Sbjct: 149 SIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAF 208
Query: 334 LLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
L+P++E++ + R+ VLVICPTRELA Q+ A LLKYH S V VIGG
Sbjct: 209 LIPAVELLYRVKFTPRNGTG----VLVICPTRELAIQSYGVAKELLKYH-SQTVGKVIGG 263
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ E + + A +LVATPGRL DH+ENT GF + +K LV+DEAD +L+ F +
Sbjct: 264 EKRKTEAEIL-AKGVNLLVATPGRLLDHLENTNGFIFK--NLKFLVMDEADRILEQNFEE 320
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEE-THEQVRQMH 512
D++KI+ +PK RQT LFSAT +V + ++L +I+ V+EG +E T+E + Q +
Sbjct: 321 DLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSP-VYID-VDEGRKEVTNEGLEQGY 378
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
V P + L L+ K++VF +T T+ A+L +K + EI
Sbjct: 379 CVVPSAMRLLFLLTFLKRFQGKK---KIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGID 435
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR-K 631
Q+ RT +F K++ IL+ ++V+ARG+D+P V ++Q P + YIHR+GRT R +
Sbjct: 436 QNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGE 495
Query: 632 GKEGQGILLLAPWEEFFLSTIK--DLPILKAPVPSVDP-DTKKKVERALS--HVEMKNKE 686
G +G+ +L+L P E F+ +K +P+ + D K VE +S + ++ +
Sbjct: 496 GAKGKALLVLTPQELKFIQYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAK 555
Query: 687 AAYQAWLGYYNSNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAIPKLVLGKMGLRN 740
AY+ ++ Y+S+ +D + + +L E + S G +PP + L + + G R+
Sbjct: 556 EAYKTYISGYDSHSM--KDVFNVHQLNLTEVATSFGFSDPPKVA-LKIDRGGYRS 607
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 157/463 (33%), Positives = 272/463 (58%)
Query: 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP 345
+S +LKG+K+ G++ MT +Q T+ LL+G+DVLA AKTG+GKT+AFL+PSIE++ K
Sbjct: 168 VSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLK 227
Query: 346 PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQA 405
+ R+ V+V+ PTRELA Q L+ +H +++GG+ + E +++ A
Sbjct: 228 FMPRNGTG----VIVLSPTRELAMQTYGVLKELMTHHVHT-YGLIMGGSNRSAEAQKL-A 281
Query: 406 NPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ 465
N ILVATPGRL DH++NT GF + ++ L++DEAD +L++GF +++++II +PK+
Sbjct: 282 NGVNILVATPGRLLDHLQNTPGFMFK--NLQCLIIDEADRILEVGFEEELKQIIKLLPKK 339
Query: 466 RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLY 525
RQ++LFSAT +V + I+LK++ ++ + T E + Q ++V P + F LL+
Sbjct: 340 RQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLF 399
Query: 526 VLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK 585
L++ N + K++VF ++ M + +LL + L V IH ++ Q+ RT +F
Sbjct: 400 TFLKK----NRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCN 455
Query: 586 SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG--ILLLAP 643
+ IL+ +DV+ARG+D P+V ++Q P D ++YIHR+GRT R G G+G +L+L P
Sbjct: 456 ADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTAR-GINGRGHALLILRP 514
Query: 644 WEEFFLSTIKD--LPILK-----APVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYY 696
E FL +K +P+ + + + K +E+ ++ K+ + AY++++ Y
Sbjct: 515 EELGFLRFLKQAKVPLSEFEFSWTKISDIQSQLDKLIEK--NYYLHKSAQEAYKSYVRAY 572
Query: 697 NSNKKVGRDKYKLVELANEYSRSMGLDNPPAIPKLVLGKMGLR 739
+S+ + ++L + + S G PP + V G++
Sbjct: 573 DSHSLKQIYNVETLDLP-KVAMSFGFKVPPFVDLNVHSSKGVK 614
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 159/464 (34%), Positives = 272/464 (58%)
Query: 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP 345
+S +LKGI D G+ MT +Q ++ LL+G+D+LA AKTG+GKT+AFL+P++E++ K
Sbjct: 173 VSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKLK 232
Query: 346 PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQA 405
+ R+ V+++ PTRELA Q L+ +H +++GG+ + E +++
Sbjct: 233 FMPRNGTG----VIILSPTRELAMQTYGVLKELMNHHVHT-YGLIMGGSNRSAEAQKL-G 286
Query: 406 NPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ 465
N I+VATPGRL DH++NT GF + ++ LV+DEAD +L++GF +++++II +PK+
Sbjct: 287 NGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 344
Query: 466 RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLY 525
RQT+LFSAT +V + I+LK++ ++ + T + + Q ++V P + F LL+
Sbjct: 345 RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLF 404
Query: 526 VLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK 585
L++ N + K++VF ++ M + +LL + L V IH ++ Q+ RT +F
Sbjct: 405 TFLKK----NRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCN 460
Query: 586 SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQ--YIHRLGRTGRKGKEGQG--ILLL 641
++ IL+ +DV+ARG+D P+V ++Q P D +Q YIHR+GRT R G G+G +L+L
Sbjct: 461 AESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIHRVGRTAR-GINGRGHALLIL 519
Query: 642 APWEEFFLSTIKD--LPILKAPVP-SVDPDTKKKVERAL--SHVEMKNKEAAYQAWLGYY 696
P E FL +K +P+ + S D + ++E+ + ++ K+ + AY+A++ Y
Sbjct: 520 RPEELGFLRYLKQARVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKAYIRAY 579
Query: 697 NSNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAIPKLVLGKMGLR 739
+S+ + Y + L N+ S S G PP + V G R
Sbjct: 580 DSHSL--KQIYNVGNLDLNKVSLSFGFKVPPYVDLNVNSNQGRR 621
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 168/471 (35%), Positives = 265/471 (56%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F++ +S +LK I+ G+ MT VQ T+P LL G+DVL AKTG+GKT+AFL+P+IE
Sbjct: 43 KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102
Query: 340 VV--IKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
++ +K P R ++VI PTRELA Q A L+++H S +VIGG
Sbjct: 103 LLHSLKFKP------RNGTGIIVITPTRELALQIFGVARELMEFH-SQTFGIVIGGANRR 155
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +++ +L+ATPGRL DH++NT GF + +K L++DEAD +L++GF ++ +
Sbjct: 156 QEAEKLMKG-VNMLIATPGRLLDHLQNTKGFVFK--NLKALIIDEADRILEIGFEDEMRQ 212
Query: 458 IIAAVPKQ-RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516
II +P + RQ++LFSAT +V + I+L+ FIN V E T + + Q ++V
Sbjct: 213 IIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCD 272
Query: 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYR 576
D F LL+ L+ N + K++VF ++ + A+LL + L V E+H ++ Q R
Sbjct: 273 SDKRFLLLFSFLKR----NQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKR 328
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR--KGKE 634
T EF ++ IL+ +DV+ARG+D P V +IQ P D YIHR+GRT R KGK
Sbjct: 329 TNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGK- 387
Query: 635 GQGILLLAPWEEFFLSTIK--DLPILKAPVPSVD-PDTKKKVERALSHVEMKNKEA--AY 689
G+ ++ L P E FL +K +P+ + P + + ++E+ + ++ A Y
Sbjct: 388 GKSLMFLTPNELGFLRYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGY 447
Query: 690 QAWLGYYNSN--KKVGR-DKYKLVELANEYSRSMGLDNPPAIPKLVLGKMG 737
+++L Y S+ K V + DK L ++A Y G PP + + +G G
Sbjct: 448 RSYLQAYASHSLKTVYQIDKLDLAKVAKSY----GFPVPPKV-NITIGASG 493
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 180/498 (36%), Positives = 276/498 (55%)
Query: 255 LDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLL 314
LD EN V S S +F +S K IK+ G+E MT +Q+ ++P LL
Sbjct: 65 LDNENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLL 124
Query: 315 KGKDVLAKAKTGTGKTVAFLLPSIEVV--IKSPPVDRDQRRPPILVLVICPTRELATQAA 372
G+DVL AKTG+GKT+AFL+P+IE++ +K P R V++I PTRELA Q
Sbjct: 125 AGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP------RNGTGVIIISPTRELALQIF 178
Query: 373 TEASTLLKYH-PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATR 431
A LLKYH + G+ VIGG E ++ +LVATPGRL DH++NT GF R
Sbjct: 179 GVAKELLKYHHQTFGI--VIGGANRRAEADKL-VKGVNLLVATPGRLLDHLQNTKGFVFR 235
Query: 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ-RQTLLFSATVPEEVRQICHIALKRD 490
++ LV+DEAD +L++GF ++ +I+ +P + RQTLLFSAT +V + I+LK
Sbjct: 236 --NLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPG 293
Query: 491 HEFINTVEEGSE-ETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMV 549
++N V+ G T E + Q ++V D F LL+ L+ N + KV+VF ++
Sbjct: 294 PLYVN-VDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKR----NLKKKVIVFMSSCAS 348
Query: 550 TRMVADLLGELKLNVREIHSRKPQSYRTRVSDEF-RKSKGLILVTSDVSARGVDYPDVTL 608
+ +A+LL + L V ++H ++ Q RT EF KG++L T+ V+ARG+D P V
Sbjct: 349 VKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTN-VAARGLDIPAVDW 407
Query: 609 VIQVGLPSDREQYIHRLGRTGRKGK-EGQGILLLAPWEEFFLSTIKDLPI----LKAPVP 663
++Q P D YIHR+GRT R K G+ ++ LAP E FL +K + + P
Sbjct: 408 IVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFPAN 467
Query: 664 SVDPDTKKKVERALS---HVEMKNKEAAYQAWLGYYNS-NKKVGRDKYKLVELANEYSRS 719
V + + ++E+ +S +++ K+ Y+++L Y S + K D KL +LA + ++S
Sbjct: 468 KV-ANVQSQLEKLVSKNYYLQQSAKDG-YRSYLQAYASYSLKSIFDINKL-DLA-KVAKS 523
Query: 720 MGLDNPPAIPKLVLGKMG 737
G +PP + + +G G
Sbjct: 524 FGFAHPPNV-NITIGASG 540
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 176/482 (36%), Positives = 270/482 (56%)
Query: 258 ENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGK 317
E+G I GK M+ FD +S + IK+ G++ MT +Q ++ LL+GK
Sbjct: 70 EDGEDEKNIVIVGK--GIMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377
DVL A+TG+GKT+AFL+P++E++ K +R R V+VICPTRELA Q A
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFK----ERFSPRNGTGVIVICPTRELAIQTKNVAEE 183
Query: 378 LLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437
LLK+H S V +VIGG E +R+ A+ +++ATPGRL DH++NT F + + K
Sbjct: 184 LLKHH-SQTVSMVIGGNNRRSEAQRI-ASGSNLVIATPGRLLDHLQNTKAFIYKHL--KC 239
Query: 438 LVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTV 497
LV+DEAD +L+ F +D+ KI+ +PK RQT LFSAT +V+ + ++L V
Sbjct: 240 LVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHV--DV 297
Query: 498 EEGSEE-THEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADL 556
++G + T+E + Q + V P LL L++ N K++VF +T + ++
Sbjct: 298 DDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKK----NLNKKIMVFFSTCKSVQFHTEI 353
Query: 557 LGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPS 616
+ ++V +IH Q+ RT+ +F K+K IL+ +DV+ARG+D P V +IQ P
Sbjct: 354 MKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPD 413
Query: 617 DREQYIHRLGRTGR-KGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKK--KV 673
+YIHR+GRT R +G +G+ +L+L P EE L I+ L K PV ++ + K+ V
Sbjct: 414 KPTEYIHRVGRTARGEGAKGKALLVLIP-EE--LQFIRYLKAAKVPVKELEFNEKRLSNV 470
Query: 674 ERALSHVEMK----NKEA--AYQAWLGYYNSNK-KVGRDKYKLVELANEYSRSMGLDNPP 726
+ AL K NK A AY+A+L YNS+ K + ++L LA + S +PP
Sbjct: 471 QSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDIFNVHRLDLLA--VAESFCFSSPP 528
Query: 727 AI 728
+
Sbjct: 529 KV 530
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 154/470 (32%), Positives = 262/470 (55%)
Query: 276 MSES--RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF 333
+SE+ F + ++ + +K+A + +T +Q+ +P LKG+D+L AKTG+GKT+AF
Sbjct: 34 LSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAF 93
Query: 334 LLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
++P IE + + D + LVI PTRELA Q + + H S ++IGG
Sbjct: 94 IVPLIENLYRKKWTSLDG----LGALVISPTRELAIQTFETLVKIGRLH-SFSAGLIIGG 148
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
E++R+ ILV TPGRL HI+ F T G+++L+LDEAD +LDMGFR
Sbjct: 149 NNYKEEKERLSR--MNILVCTPGRLLQHIDQAVNFDTS--GLQMLILDEADRILDMGFRT 204
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513
++ I++++P RQT+LFSAT + V+ + ++L+ +FI+ E + T + Q +L
Sbjct: 205 TLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNP-DFISVHENDTSSTPSNLNQFYL 263
Query: 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRK 571
PL +L+ +R H+ ++K +VF ++ R V + ++ +++ +H ++
Sbjct: 264 TVPLTEKLDILFGFIRTHL----KFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQ 319
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
Q+ RT V+ +F S+ ++L +D+ ARG+D+P V VIQ+ P D + YIHR+GRT R
Sbjct: 320 KQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARY 379
Query: 632 GKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAY-- 689
+ G +LLL P EE FL ++ I + +V K + L ++ K+ + Y
Sbjct: 380 NRSGNALLLLLPSEEAFLKRLESKKIAVERI-NVKDGKKTSIRNQLQNLCFKDNDIKYIG 438
Query: 690 -QAWLGYYNS-NKKVGRDKYKLVELANE-YSRSMGLDNPPAIPKLVLGKM 736
+A++ Y S + +D ++L +L E ++ S+GL P PK+ GK+
Sbjct: 439 QKAFISYLRSIYLQKDKDVFQLDKLPVEAFADSLGL---PGTPKITFGKL 485
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 155/461 (33%), Positives = 256/461 (55%)
Query: 275 FMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFL 334
+ S + F IS L+LK + ++ + K+T +Q A+LP L G+D+L AKTG+GKT++F+
Sbjct: 137 YPSATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFI 196
Query: 335 LPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT 394
LP +E + ++ R R I +V+ PTRELA Q + KYH + ++IGG
Sbjct: 197 LPILETLWRN----RWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYH-TFSAGLIIGGR 251
Query: 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKD 454
+ +Q++ + N IL+ATPGRL H++ T GF +K+LVLDEAD +LD+GF K
Sbjct: 252 NV--QQEKDKINAMNILIATPGRLLQHMDETYGFDCS--NLKILVLDEADRILDLGFSKC 307
Query: 455 IEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514
+ I+ +P++RQTLLFSAT + +R + ++L+ + E+I+ E+ T + + Q V
Sbjct: 308 LNSIVENLPRERQTLLFSATQTKSIRDLARLSLQ-EPEYISVYEKDITTTPQNLTQTLCV 366
Query: 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKP 572
PL++ +L+ ++ H+ K++VF + R + L + +H +
Sbjct: 367 IPLEMKLNMLFSFIKTHLTS----KIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMK 422
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R V ++F K K L +D++ARG+D+P V VIQV P D E YIHR+GRT R
Sbjct: 423 QWTRLEVFEDFCKKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARND 482
Query: 633 KEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQA- 691
GQ I +L P E+ + + + +K + +P+ ++ LS + + Y A
Sbjct: 483 APGQSITILLPSEKDGMVNLMEKQKMKFEILEPNPEKLVSIDSKLSSFLSEKTDLKYLAQ 542
Query: 692 --WLGYYNS-NKKVGRDKYKLVEL-ANEYSRSMGLDNPPAI 728
++ Y S ++ ++ +K+ EL NE+S+S+GL P I
Sbjct: 543 KSFVSYLRSVYRQSNKEIFKIQELNINEFSKSLGLLGTPNI 583
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 152/451 (33%), Positives = 268/451 (59%)
Query: 256 DKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLK 315
D E + + ++ + SF S S ++ +LK IK+ G+ MT +Q ++ LL+
Sbjct: 159 DSEVPSLPLGLTGAFEDTSFASLSSL----VNENTLKAIKEMGFTNMTEIQHKSIRPLLE 214
Query: 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375
G+D+LA AKTG+GKT+AFL+P++E+++K + R+ VL++ PTRELA Q
Sbjct: 215 GRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTG----VLILSPTRELAMQTFGVL 270
Query: 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435
L+ YH +++GG+ + E +++ N I+VATPGRL DH++NT GF + +
Sbjct: 271 KELMMYHVHT-YGLIMGGSNRSAEAQKL-GNGINIIVATPGRLLDHMQNTPGFMYK--NL 326
Query: 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
+ LV+DEAD +LD+GF +++++II +P +RQT+LFSAT +V + I+LK++ ++
Sbjct: 327 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVG 386
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
++ + T + + Q ++V P + F LL+ L++ N + K++VF ++ + +
Sbjct: 387 VDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHYE 442
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
LL + L V IH R+ Q+ RT +F + IL+ +DV+ARG+D P+V ++Q P
Sbjct: 443 LLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPP 502
Query: 616 SDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEFFLSTIKD--LPILKAPVP-SVDPDTK 670
D ++YIHR+GRT R G G+G +L+L P E FL +K +P+ + S D +
Sbjct: 503 DDPKEYIHRVGRTAR-GLNGRGHALLILHPEELGFLRYLKQSKVPLSEFEFSWSKISDIQ 561
Query: 671 KKVERAL--SHVEMKNKEAAYQAWLGYYNSN 699
++E+ + ++ K+ + AY++++ Y+S+
Sbjct: 562 SQLEKLIEKNYFLHKSAQEAYKSYIRAYDSH 592
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 151/461 (32%), Positives = 262/461 (56%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
S S+F I+ +LKG+K+A + +T +Q+ T+P+ LKG+D++ A+TG+GKT+AFL+P
Sbjct: 46 SVSQFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIP 105
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396
IE +I++ + D + L++ PTRELA Q + + KY+ + +V GG +
Sbjct: 106 VIESLIRNKITEYDG----LAALIVSPTRELAVQIFEVLTKIGKYN-TFSAGLVTGGKDV 160
Query: 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456
E++R+ ILV TPGR+ H+ G T ++VLVLDEAD LDMGF+K I+
Sbjct: 161 QFEKERVSR--MNILVGTPGRISQHLNEAVGMETS--NLQVLVLDEADRCLDMGFKKQID 216
Query: 457 KIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516
I+ +P RQTLLFSAT E V + ++L ++ + ++ T E + Q ++ P
Sbjct: 217 NILGHLPTTRQTLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVP 276
Query: 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQS 574
LD +L+ ++ H+ K+LVF +++ + + L+ +++ +++ R Q+
Sbjct: 277 LDEKLDVLWSFIKSHLKS----KILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQT 332
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R + +F +++ L +D+ ARG+D+P + V+QV P D Y+HR+GR+ R G++
Sbjct: 333 SRLETTMKFSQAQHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRK 392
Query: 635 GQGILLLAPWEEFFLSTIKDLPILKA-P-VPSVDPDTKKKVERALSHVEMKN---KEAAY 689
G+ +L+L P EE + +K L I K P + ++ +KK + L + K+ K
Sbjct: 393 GKSLLMLLPSEEEGM--LKRLKIHKIEPKLMNIKQKSKKSIRPQLQSLCFKDPVMKNLGQ 450
Query: 690 QAWLGYYNS-NKKVGRDKYKLVEL-ANEYSRSMGLDNPPAI 728
+A++ Y+ S + + +D +K+ EL A Y+ S+GL P I
Sbjct: 451 RAFIAYFKSVHIQKDKDVFKVEELPAESYAASLGLPGAPKI 491
>GENEDB_PFALCIPARUM|PF13_0037 [details] [associations]
symbol:PF13_0037 "DEAD box helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844509
HSSP:P10081 KO:K01509 RefSeq:XP_001349800.1
ProteinModelPortal:Q8IEP2 EnsemblProtists:PF13_0037:mRNA
GeneID:814016 KEGG:pfa:PF13_0037 EuPathDB:PlasmoDB:PF3D7_1307300
HOGENOM:HOG000280785 OMA:YKIIVFF ProtClustDB:CLSZ2433434
Uniprot:Q8IEP2
Length = 630
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 163/456 (35%), Positives = 247/456 (54%)
Query: 299 YEKMTIVQEATLPVLLKGK---DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355
Y++ T VQ ++K K D+L +AKTGTGKT+A+LL SI +IK+ +
Sbjct: 170 YKEFTDVQRIVYDNIIKEKKQNDLLIQAKTGTGKTIAYLLLSINDIIKNKILS------- 222
Query: 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATP 415
+ L+I PTRELA Q E LL Y +I V + GG + +Q ++ I++ T
Sbjct: 223 VHTLIIVPTRELANQIYNECKLLLTYKHNINVLTLTGGIKRRDDQLNIRRIKPDIIICTV 282
Query: 416 GRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475
GRL DH E+T F T +K+L++DEAD LL G+ DI +++ +P R+ +L SAT+
Sbjct: 283 GRLLDHFESTYLFNTLFENLKMLIIDEADQLLSTGYENDIHRLLTYLPSNRRNILLSATL 342
Query: 476 PEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV-APLDLHFPLLYVLLREHVAD 534
+ +I K D+ ++N V++ S+ T +Q+ Q L +D +LY LL EH+
Sbjct: 343 GYNLDEIRKKMCKSDYIYLNCVKDISKHTSDQLIQYVLFHKAIDTTI-ILYNLLIEHMRL 401
Query: 535 NP-EYKVLVFCTTAMVTRMVADL-LGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILV 592
N YK++VF TA T A + +LK++V EIH +K ++R ++ F IL
Sbjct: 402 NQFTYKIIVFFPTARATSFYAQFFINQLKISVYEIHRKKEMAHRQITANRFSMESVGILF 461
Query: 593 TSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652
TSD+S+RG++YPD+TL+IQV P REQYIHR+GRT R K+G I+LL +E F I
Sbjct: 462 TSDISSRGLNYPDITLIIQVNTPISREQYIHRVGRTARSNKKGMAIILLNEADELFYQEI 521
Query: 653 KDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKY----- 707
KDL I K + + LS M N + Y A+ YY+S + + KY
Sbjct: 522 KDLNIQKLNAQNYTLKNTN-LSNYLS-TWMSNTQLLYLAY-AYYSSILRFYKTKYTHLKI 578
Query: 708 ---KLVELANEYSRSMGLDNPPAIPKLVLGKMGLRN 740
++++ N S GL P I + + + ++N
Sbjct: 579 NDDEIIDAVNNMLLSTGLVEQPYISRNLATTLNMQN 614
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 154/452 (34%), Positives = 271/452 (59%)
Query: 258 ENGGMSVAISSP-GKHDSFMSESRFDQCS--ISALSLKGIKDAGYEKMTIVQEATLPVLL 314
+ G S S P G +F ++ FD + ++ +LK IK+ G+ MT +Q ++ LL
Sbjct: 160 DEGEDSEVPSLPLGLTGAF-EDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL 218
Query: 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374
+G+D+LA AKTG+GKT+AFL+P++E+++K + R+ VL++ PTRELA Q
Sbjct: 219 EGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTG----VLILSPTRELAMQTFGV 274
Query: 375 ASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434
L+ +H +++GG+ + E +++ AN I+VATPGRL DH++NT GF +
Sbjct: 275 LKELMTHHVHT-YGLIMGGSNRSAEAQKL-ANGINIVVATPGRLLDHMQNTPGFMYK--N 330
Query: 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFI 494
++ LV+DEAD +LD+GF +++++II +P +RQT+LFSAT +V + I+LK++ ++
Sbjct: 331 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 390
Query: 495 NTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVA 554
++ + T + + Q ++V P + F LL+ L++ N + K++VF ++ +
Sbjct: 391 GVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHY 446
Query: 555 DLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL 614
+LL + L V IH R+ Q+ RT +F + IL+ +DV+ARG+D P+V ++Q
Sbjct: 447 ELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDP 506
Query: 615 PSDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEFFLSTIKD--LPILKAPVP-SVDPDT 669
P D ++YIHR+GRT R G G+G +L+L P E FL +K +P+ + S D
Sbjct: 507 PDDPKEYIHRVGRTAR-GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDI 565
Query: 670 KKKVERAL--SHVEMKNKEAAYQAWLGYYNSN 699
+ ++E+ + ++ K+ + AY++++ Y+S+
Sbjct: 566 QSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSH 597
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 154/452 (34%), Positives = 271/452 (59%)
Query: 258 ENGGMSVAISSP-GKHDSFMSESRFDQCS--ISALSLKGIKDAGYEKMTIVQEATLPVLL 314
+ G S S P G +F ++ FD + ++ +LK IK+ G+ MT +Q ++ LL
Sbjct: 156 DEGEDSEVPSLPLGLTGAF-EDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL 214
Query: 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374
+G+D+LA AKTG+GKT+AFL+P++E+++K + R+ VL++ PTRELA Q
Sbjct: 215 EGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTG----VLILSPTRELAMQTFGV 270
Query: 375 ASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434
L+ +H +++GG+ + E +++ AN I+VATPGRL DH++NT GF +
Sbjct: 271 LKELMTHHVHT-YGLIMGGSNRSAEAQKL-ANGINIVVATPGRLLDHMQNTPGFMYK--N 326
Query: 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFI 494
++ LV+DEAD +LD+GF +++++II +P +RQT+LFSAT +V + I+LK++ ++
Sbjct: 327 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 386
Query: 495 NTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVA 554
++ + T + + Q ++V P + F LL+ L++ N + K++VF ++ +
Sbjct: 387 GVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHY 442
Query: 555 DLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL 614
+LL + L V IH R+ Q+ RT +F + IL+ +DV+ARG+D P+V ++Q
Sbjct: 443 ELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDP 502
Query: 615 PSDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEFFLSTIKD--LPILKAPVP-SVDPDT 669
P D ++YIHR+GRT R G G+G +L+L P E FL +K +P+ + S D
Sbjct: 503 PDDPKEYIHRVGRTAR-GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDI 561
Query: 670 KKKVERAL--SHVEMKNKEAAYQAWLGYYNSN 699
+ ++E+ + ++ K+ + AY++++ Y+S+
Sbjct: 562 QSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSH 593
>UNIPROTKB|Q8IEP2 [details] [associations]
symbol:PF13_0037 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844509 HSSP:P10081 KO:K01509 RefSeq:XP_001349800.1
ProteinModelPortal:Q8IEP2 EnsemblProtists:PF13_0037:mRNA
GeneID:814016 KEGG:pfa:PF13_0037 EuPathDB:PlasmoDB:PF3D7_1307300
HOGENOM:HOG000280785 OMA:YKIIVFF ProtClustDB:CLSZ2433434
Uniprot:Q8IEP2
Length = 630
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 163/456 (35%), Positives = 247/456 (54%)
Query: 299 YEKMTIVQEATLPVLLKGK---DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355
Y++ T VQ ++K K D+L +AKTGTGKT+A+LL SI +IK+ +
Sbjct: 170 YKEFTDVQRIVYDNIIKEKKQNDLLIQAKTGTGKTIAYLLLSINDIIKNKILS------- 222
Query: 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATP 415
+ L+I PTRELA Q E LL Y +I V + GG + +Q ++ I++ T
Sbjct: 223 VHTLIIVPTRELANQIYNECKLLLTYKHNINVLTLTGGIKRRDDQLNIRRIKPDIIICTV 282
Query: 416 GRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475
GRL DH E+T F T +K+L++DEAD LL G+ DI +++ +P R+ +L SAT+
Sbjct: 283 GRLLDHFESTYLFNTLFENLKMLIIDEADQLLSTGYENDIHRLLTYLPSNRRNILLSATL 342
Query: 476 PEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV-APLDLHFPLLYVLLREHVAD 534
+ +I K D+ ++N V++ S+ T +Q+ Q L +D +LY LL EH+
Sbjct: 343 GYNLDEIRKKMCKSDYIYLNCVKDISKHTSDQLIQYVLFHKAIDTTI-ILYNLLIEHMRL 401
Query: 535 NP-EYKVLVFCTTAMVTRMVADL-LGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILV 592
N YK++VF TA T A + +LK++V EIH +K ++R ++ F IL
Sbjct: 402 NQFTYKIIVFFPTARATSFYAQFFINQLKISVYEIHRKKEMAHRQITANRFSMESVGILF 461
Query: 593 TSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652
TSD+S+RG++YPD+TL+IQV P REQYIHR+GRT R K+G I+LL +E F I
Sbjct: 462 TSDISSRGLNYPDITLIIQVNTPISREQYIHRVGRTARSNKKGMAIILLNEADELFYQEI 521
Query: 653 KDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKY----- 707
KDL I K + + LS M N + Y A+ YY+S + + KY
Sbjct: 522 KDLNIQKLNAQNYTLKNTN-LSNYLS-TWMSNTQLLYLAY-AYYSSILRFYKTKYTHLKI 578
Query: 708 ---KLVELANEYSRSMGLDNPPAIPKLVLGKMGLRN 740
++++ N S GL P I + + + ++N
Sbjct: 579 NDDEIIDAVNNMLLSTGLVEQPYISRNLATTLNMQN 614
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 168/473 (35%), Positives = 266/473 (56%)
Query: 273 DSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVA 332
D + F+ S ++K IK+ G+ KMT VQ T+P LL G+DVL AKTG+GKT+A
Sbjct: 102 DDSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLA 161
Query: 333 FLLPSIEVV--IKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVV 390
FL+P+IE++ +K P R V++I PTRELA Q A L+++H S +V
Sbjct: 162 FLIPAIELLYSLKIKP------RNGTAVIIITPTRELALQIFGVARELMQFH-SQTCGIV 214
Query: 391 IGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG 450
IGG E ++ A +LVATPGRL DH++NT + L K LV+DEAD +L++G
Sbjct: 215 IGGADRRQEATKL-AKGVNLLVATPGRLLDHLKNTQFVFSNL---KALVIDEADRILEIG 270
Query: 451 FRKDIEKIIAAVPKQ-RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVR 509
F ++++II +P + RQ++LFSAT +V + I+L+ +IN V E T + +
Sbjct: 271 FEDEMKQIIKVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLE 330
Query: 510 QMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHS 569
Q ++V D F LL+ L+ +V + K++VF ++ + ++LL + L V ++H
Sbjct: 331 QGYVVCDSDKRFLLLFSFLKRNV----KKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHG 386
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
++ Q RT EF +K ILV +DV+ARG+D P V ++Q P D YIHR+GRT
Sbjct: 387 KQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTA 446
Query: 630 RKGKEGQG--ILLLAPWEEFFLSTIK--DLPILKAPVPSVD-PDTKKKVERALSHVEMKN 684
R G +G+G ++ L P E FL +K +P+ + P+ + + ++ + + + N
Sbjct: 447 R-GTQGKGKSLMFLTPSELGFLRYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLN 505
Query: 685 KEA--AYQAWLGYYNSNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAIPKLVLG 734
+ A Y+A+L Y S+ + Y++ +L + S S GLD P + L +G
Sbjct: 506 QSAKDGYRAYLQAYASHGL--KTVYQIDKLDLKKVSASFGLDQVPRV-NLSIG 555
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 168/473 (35%), Positives = 266/473 (56%)
Query: 273 DSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVA 332
D + F+ S ++K IK+ G+ KMT VQ T+P LL G+DVL AKTG+GKT+A
Sbjct: 102 DDSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLA 161
Query: 333 FLLPSIEVV--IKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVV 390
FL+P+IE++ +K P R V++I PTRELA Q A L+++H S +V
Sbjct: 162 FLIPAIELLYSLKIKP------RNGTAVIIITPTRELALQIFGVARELMQFH-SQTCGIV 214
Query: 391 IGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG 450
IGG E ++ A +LVATPGRL DH++NT + L K LV+DEAD +L++G
Sbjct: 215 IGGADRRQEATKL-AKGVNLLVATPGRLLDHLKNTQFVFSNL---KALVIDEADRILEIG 270
Query: 451 FRKDIEKIIAAVPKQ-RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVR 509
F ++++II +P + RQ++LFSAT +V + I+L+ +IN V E T + +
Sbjct: 271 FEDEMKQIIKVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLE 330
Query: 510 QMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHS 569
Q ++V D F LL+ L+ +V + K++VF ++ + ++LL + L V ++H
Sbjct: 331 QGYVVCDSDKRFLLLFSFLKRNV----KKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHG 386
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
++ Q RT EF +K ILV +DV+ARG+D P V ++Q P D YIHR+GRT
Sbjct: 387 KQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTA 446
Query: 630 RKGKEGQG--ILLLAPWEEFFLSTIK--DLPILKAPVPSVD-PDTKKKVERALSHVEMKN 684
R G +G+G ++ L P E FL +K +P+ + P+ + + ++ + + + N
Sbjct: 447 R-GTQGKGKSLMFLTPSELGFLRYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLN 505
Query: 685 KEA--AYQAWLGYYNSNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAIPKLVLG 734
+ A Y+A+L Y S+ + Y++ +L + S S GLD P + L +G
Sbjct: 506 QSAKDGYRAYLQAYASHGL--KTVYQIDKLDLKKVSASFGLDQVPRV-NLSIG 555
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 163/487 (33%), Positives = 275/487 (56%)
Query: 271 KHDSFMSESRF-DQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGK 329
++D +++++F IS +LKG++++ + K+T +Q ++PV L+G DVLA AKTG+GK
Sbjct: 32 EYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGK 91
Query: 330 TVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQV 389
T+AFL+P IE + + + D + L+I PTRELA Q E T + H S +
Sbjct: 92 TLAFLVPVIEKLYREKWTEFDG----LGALIISPTRELAMQIY-EVLTKIGSHTSFSAGL 146
Query: 390 VIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM 449
VIGG + E +R+ IL+ TPGR+ H++ G T +++LVLDEAD LDM
Sbjct: 147 VIGGKDVKFELERISR--INILIGTPGRILQHLDQAVGLNTS--NLQMLVLDEADRCLDM 202
Query: 450 GFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINT--VEEGS----EE 503
GF+K ++ I++ + RQTLLFSAT + V + ++L D++ + T V +GS
Sbjct: 203 GFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLT-DYKTVGTHDVMDGSVNKEAS 261
Query: 504 THEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK-- 561
T E ++Q ++ PL +L+ ++ H+ + K++VF +++ V + +++
Sbjct: 262 TPETLQQFYIEVPLADKLDILFSFIKSHL----KCKMIVFLSSSKQVHFVYETFRKMQPG 317
Query: 562 LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY 621
+++ +H R+ Q RT D+F +++ + L +DV ARG+D+P V V+QV P D + Y
Sbjct: 318 ISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTY 377
Query: 622 IHRLGRTGRKGKEGQGILLLAPWE-EFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHV 680
IHR+GR R GK+G+ +++L P E E FL + I + ++ KK ++ L +
Sbjct: 378 IHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIEPGKL-NIKQSKKKSIKPQLQSL 436
Query: 681 EMKNKEAAY---QAWLGYYNSNKKVGRDK--YKLVEL-ANEYSRSMGLDNPPAIPKLVLG 734
K+ E Y +A++ Y S V +DK +K EL E++ S+GL P PK+ +
Sbjct: 437 LFKDPELKYLGQKAFISYVRSIY-VQKDKQVFKFDELPTEEFAYSLGL---PGAPKIKM- 491
Query: 735 KMGLRNI 741
G++ I
Sbjct: 492 -KGMKTI 497
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 152/453 (33%), Positives = 269/453 (59%)
Query: 256 DKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLK 315
D E + + ++ + SF S S ++ +LK I++ G+++MT +Q ++ LL+
Sbjct: 150 DSEVPSLPLGLTGAFEDTSFASLSNL----VNENTLKAIEEMGFKRMTEIQHKSIRPLLE 205
Query: 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375
G+D+LA AKTG+GKT+AFL+P IE+++K + R+ VL++ PTRELA Q
Sbjct: 206 GRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTG----VLILSPTRELAMQTFGVL 261
Query: 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435
L+ +H +++GG+ + E +++ N I+VATPGRL DH++NT GF + +
Sbjct: 262 KELMTHHVHT-YGLIMGGSNRSAEVQKL-LNGINIIVATPGRLLDHMQNTPGFMYK--NL 317
Query: 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
+ LV+DEAD +LD+GF +++++II +P +RQT+LFSAT +V + I+LK++ ++
Sbjct: 318 QCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVG 377
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
++ T + + Q ++V P + F LL+ L++ N + KV+VF ++ M + +
Sbjct: 378 VDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKYHYE 433
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
LL + L V IH ++ Q+ RT +F + IL+ +DV+ARG+D P+V ++Q P
Sbjct: 434 LLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPP 493
Query: 616 SDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEFFLSTIKD--LPILK-----APVPSVD 666
D ++YIHR+GRT R G G+G +L+L P E FL +K +P+ + + V +
Sbjct: 494 DDPKEYIHRVGRTAR-GLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQ 552
Query: 667 PDTKKKVERALSHVEMKNKEAAYQAWLGYYNSN 699
+K +E+ ++ K+ + AY++++ Y+S+
Sbjct: 553 SQLEKLIEK--NYFLHKSAQEAYKSYIRAYDSH 583
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 150/441 (34%), Positives = 261/441 (59%)
Query: 270 GKHDSFMSESRFDQCS-ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTG 328
G +F S C+ ++ +LK IK+ G+ MT +Q ++ LL+G+D+LA AKTG+G
Sbjct: 169 GLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSG 228
Query: 329 KTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ 388
KT+AFL+P++E+++K R R VL++ PTRELA Q L+ +H
Sbjct: 229 KTLAFLIPAVELIVKL----RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHT-YG 283
Query: 389 VVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD 448
+++GG+ + E +++ N I+VATPGRL DH++NT GF + ++ LV+DEAD +LD
Sbjct: 284 LIMGGSNRSAEAQKL-GNGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILD 340
Query: 449 MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQV 508
+GF +++++II +P +RQT+LFSAT +V + I+LK++ ++ ++ + T + +
Sbjct: 341 VGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGL 400
Query: 509 RQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIH 568
Q ++V P + F LL+ L++ N + K++VF ++ M + +LL + L V IH
Sbjct: 401 EQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIH 456
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRT 628
++ Q+ RT +F + L+ +DV+ARG+D P+V ++Q P D ++YIHR+GRT
Sbjct: 457 GKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRT 516
Query: 629 GRKGKEGQG--ILLLAPWEEFFLSTIKDLPILKAPVPSVD------PDTKKKVERAL--S 678
R G G+G +L+L P E FL +K K P+ D D + ++E+ + +
Sbjct: 517 AR-GLNGRGHALLILRPEELGFLRYLKQS---KVPLSEFDFSWSKISDIQSQLEKLIEKN 572
Query: 679 HVEMKNKEAAYQAWLGYYNSN 699
+ K+ + AY++++ Y+S+
Sbjct: 573 YFLHKSAQEAYKSYIRAYDSH 593
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 152/453 (33%), Positives = 268/453 (59%)
Query: 256 DKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLK 315
D E + + ++ + SF S S ++ +LK I++ G++ MT +Q ++ LL+
Sbjct: 164 DSEVPSLPLGVTGAFEDTSFASLSNL----VNENTLKAIEEMGFKHMTEIQHKSIRPLLE 219
Query: 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375
G+D+LA AKTG+GKT+AFL+P IE+++K + R+ VL++ PTRELA Q
Sbjct: 220 GRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTG----VLILSPTRELAMQTFGVL 275
Query: 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435
L+ +H +++GG+ + E +++ N I+VATPGRL DH++NT GF + +
Sbjct: 276 KELMTHHVHT-YGLIMGGSNRSAEVQKL-LNGINIVVATPGRLLDHMQNTPGFMYK--NL 331
Query: 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
+ LV+DEAD +LD+GF +++++II +P +RQT+LFSAT +V + I+LK++ ++
Sbjct: 332 QCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVG 391
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
++ T + + Q ++V P + F LL+ L++ N + KV+VF ++ M + +
Sbjct: 392 VDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKYHYE 447
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
LL + L V IH ++ Q+ RT +F + IL+ +DV+ARG+D P+V ++Q P
Sbjct: 448 LLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPP 507
Query: 616 SDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEFFLSTIKD--LPILK-----APVPSVD 666
D ++YIHR+GRT R G G+G +L+L P E FL +K +P+ + + V +
Sbjct: 508 DDPKEYIHRVGRTAR-GLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQ 566
Query: 667 PDTKKKVERALSHVEMKNKEAAYQAWLGYYNSN 699
+K +E+ ++ K+ + AY++++ Y+S+
Sbjct: 567 SQLEKLIEK--NYFLHKSAQEAYKSYIRAYDSH 597
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 152/453 (33%), Positives = 268/453 (59%)
Query: 256 DKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLK 315
D E + + ++ + SF S S ++ +LK I++ G++ MT +Q ++ LL+
Sbjct: 152 DSEVPSLPLGVTGAFEDTSFASLSNL----VNENTLKAIEEMGFKHMTEIQHKSIRPLLE 207
Query: 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375
G+D+LA AKTG+GKT+AFL+P IE+++K + R+ VL++ PTRELA Q
Sbjct: 208 GRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTG----VLILSPTRELAMQTFGVL 263
Query: 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435
L+ +H +++GG+ + E +++ N I+VATPGRL DH++NT GF + +
Sbjct: 264 KELMTHHVHT-YGLIMGGSNRSAEVQKL-LNGINIVVATPGRLLDHMQNTPGFMYK--NL 319
Query: 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
+ LV+DEAD +LD+GF +++++II +P +RQT+LFSAT +V + I+LK++ ++
Sbjct: 320 QCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVG 379
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
++ T + + Q ++V P + F LL+ L++ N + KV+VF ++ M + +
Sbjct: 380 VDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKYHYE 435
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
LL + L V IH ++ Q+ RT +F + IL+ +DV+ARG+D P+V ++Q P
Sbjct: 436 LLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPP 495
Query: 616 SDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEFFLSTIKD--LPILK-----APVPSVD 666
D ++YIHR+GRT R G G+G +L+L P E FL +K +P+ + + V +
Sbjct: 496 DDPKEYIHRVGRTAR-GLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQ 554
Query: 667 PDTKKKVERALSHVEMKNKEAAYQAWLGYYNSN 699
+K +E+ ++ K+ + AY++++ Y+S+
Sbjct: 555 SQLEKLIEK--NYFLHKSAQEAYKSYIRAYDSH 585
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 146/417 (35%), Positives = 255/417 (61%)
Query: 290 SLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR 349
+L+ IK+ G+ MT +Q ++ LL+G+D+LA AKTG+GKT+AFL+P++E+++K R
Sbjct: 191 TLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----R 246
Query: 350 DQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQ 409
R VL++ PTRELA Q L+ +H +++GG+ + E +++ AN
Sbjct: 247 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHT-YGLIMGGSNRSAEAQKL-ANGIN 304
Query: 410 ILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTL 469
I+VATPGRL DH++NT GF + ++ LV+DEAD +LD+GF +++++II +P +RQT+
Sbjct: 305 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 362
Query: 470 LFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
LFSAT +V + I+LK++ ++ ++ + T + + Q ++V P + F LL+ L+
Sbjct: 363 LFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLK 422
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+ N + K++VF ++ + +LL + L V IH R+ Q+ RT +F +
Sbjct: 423 K----NRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 478
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEF 647
IL+ +DV+ARG+D P+V ++Q P D ++YIHR+GRT R G G+G +L+L P E
Sbjct: 479 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGRGHALLILRPEELG 537
Query: 648 FLSTIKD--LPILKAPVP-SVDPDTKKKVERAL--SHVEMKNKEAAYQAWLGYYNSN 699
FL +K +P+ + S D + ++E+ + ++ K+ + AY++++ Y+S+
Sbjct: 538 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSH 594
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 146/417 (35%), Positives = 255/417 (61%)
Query: 290 SLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR 349
+L+ IK+ G+ MT +Q ++ LL+G+D+LA AKTG+GKT+AFL+P++E+++K R
Sbjct: 216 TLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----R 271
Query: 350 DQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQ 409
R VL++ PTRELA Q L+ +H +++GG+ + E +++ AN
Sbjct: 272 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHT-YGLIMGGSNRSAEAQKL-ANGIN 329
Query: 410 ILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTL 469
I+VATPGRL DH++NT GF + ++ LV+DEAD +LD+GF +++++II +P +RQT+
Sbjct: 330 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 387
Query: 470 LFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
LFSAT +V + I+LK++ ++ ++ + T + + Q ++V P + F LL+ L+
Sbjct: 388 LFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLK 447
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+ N + K++VF ++ + +LL + L V IH R+ Q+ RT +F +
Sbjct: 448 K----NRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 503
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEF 647
IL+ +DV+ARG+D P+V ++Q P D ++YIHR+GRT R G G+G +L+L P E
Sbjct: 504 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGRGHALLILRPEELG 562
Query: 648 FLSTIKD--LPILKAPVP-SVDPDTKKKVERAL--SHVEMKNKEAAYQAWLGYYNSN 699
FL +K +P+ + S D + ++E+ + ++ K+ + AY++++ Y+S+
Sbjct: 563 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSH 619
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 146/417 (35%), Positives = 255/417 (61%)
Query: 290 SLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR 349
+L+ IK+ G+ MT +Q ++ LL+G+D+LA AKTG+GKT+AFL+P++E+++K R
Sbjct: 187 TLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----R 242
Query: 350 DQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQ 409
R VL++ PTRELA Q L+ +H +++GG+ + E +++ AN
Sbjct: 243 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHT-YGLIMGGSNRSAEAQKL-ANGIN 300
Query: 410 ILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTL 469
I+VATPGRL DH++NT GF + ++ LV+DEAD +LD+GF +++++II +P +RQT+
Sbjct: 301 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 358
Query: 470 LFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
LFSAT +V + I+LK++ ++ ++ + T + + Q ++V P + F LL+ L+
Sbjct: 359 LFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLK 418
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+ N + K++VF ++ + +LL + L V IH R+ Q+ RT +F +
Sbjct: 419 K----NRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSG 474
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG--ILLLAPWEEF 647
IL+ +DV+ARG+D P+V ++Q P D ++YIHR+GRT R G G+G +L+L P E
Sbjct: 475 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGRGHALLILRPEELG 533
Query: 648 FLSTIKD--LPILKAPVP-SVDPDTKKKVERAL--SHVEMKNKEAAYQAWLGYYNSN 699
FL +K +P+ + S D + ++E+ + ++ K+ + AY++++ Y+S+
Sbjct: 534 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSH 590
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 159/459 (34%), Positives = 256/459 (55%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+RF +S +LKG+++A Y +T +Q+ T+ + L+GKDVL AKTG+GKT+AFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + + D + VL+I PTRELA Q + K H ++IGG L
Sbjct: 129 EALYRLQWTSTDG----LGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKH 183
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGF-ATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +R+ N ILV TPGRL H++ T F AT L ++LVLDEAD +LDMGF +
Sbjct: 184 EAERI--NNINILVCTPGRLLQHMDETVSFHATDL---QMLVLDEADRILDMGFADTMNA 238
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
+I +PK+RQTLLFSAT + V+ + ++LK E++ E+ T + Q ++V L
Sbjct: 239 VIENLPKKRQTLLFSATQTKSVKDLARLSLKNP-EYVWVHEKAKYSTPATLEQNYIVCEL 297
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSY 575
+LY LR H+ + K +VF ++ + + + L+ +++ +H R+ Q
Sbjct: 298 QQKISVLYSFLRSHL----KKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMR 353
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R V +EF + + +L +D++ARG+D+P V V+Q P D YIHR GRT R ++G
Sbjct: 354 RMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDG 413
Query: 636 QGILLLAPWEEFFLSTI--KDLPILKAPV-PSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
+ +L+L P E+ + + K +P+ + + P D +KK+E L+ + KE A + +
Sbjct: 414 EALLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQ-DQDLKERAQRCF 472
Query: 693 LGYYNSNKKVGRDK--YKLVELA-NEYSRSMGLDNPPAI 728
+ Y S + +DK + + +L EY+ S+GL P +
Sbjct: 473 VSYVRSVYLM-KDKEVFDVSKLPIPEYALSLGLAVAPRV 510
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 619 (223.0 bits), Expect = 2.0e-60, P = 2.0e-60
Identities = 159/459 (34%), Positives = 256/459 (55%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+RF +S +LKG+++A Y +T +Q+ T+ + L+GKDVL AKTG+GKT+AFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + + D + VL+I PTRELA Q + K H ++IGG L
Sbjct: 129 EALYRLQWTSTDG----LGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKH 183
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGF-ATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +R+ N ILV TPGRL H++ T F AT L ++LVLDEAD +LDMGF +
Sbjct: 184 EAERI--NNINILVCTPGRLLQHMDETVSFHATDL---QMLVLDEADRILDMGFADTMNA 238
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
+I +PK+RQTLLFSAT + V+ + ++LK E++ E+ T + Q ++V L
Sbjct: 239 VIENLPKKRQTLLFSATQTKSVKDLARLSLKNP-EYVWVHEKAKYSTPATLEQNYIVCEL 297
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSY 575
+LY LR H+ + K +VF ++ + + + L+ +++ +H R+ Q
Sbjct: 298 QQKISVLYSFLRSHL----KKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMR 353
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R V +EF + + +L +D++ARG+D+P V V+Q P D YIHR GRT R ++G
Sbjct: 354 RMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDG 413
Query: 636 QGILLLAPWEEFFLSTI--KDLPILKAPV-PSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
+ +L+L P E+ + + K +P+ + + P D +KK+E L+ + KE A + +
Sbjct: 414 EALLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQ-DQDLKERAQRCF 472
Query: 693 LGYYNSNKKVGRDK--YKLVELA-NEYSRSMGLDNPPAI 728
+ Y S + +DK + + +L EY+ S+GL P +
Sbjct: 473 VSYVRSVYLM-KDKEVFDVSKLPIPEYALSLGLAVAPRV 510
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 618 (222.6 bits), Expect = 2.7e-60, P = 2.7e-60
Identities = 163/462 (35%), Positives = 257/462 (55%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+RF +S +LKG+++A Y +T +Q+ T+ + L+GKDVL AKTG+GKT+AFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + + D + VL+I PTRELA Q + K H ++IGG L
Sbjct: 129 EALYRLQWTSTDG----LGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKH 183
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGF-ATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +R+ N ILV TPGRL H++ T F AT L ++LVLDEAD +LDMGF +
Sbjct: 184 EAERI--NNINILVCTPGRLLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNA 238
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
II +PK+RQTLLFSAT + V+ + ++LK D E++ E+ T + Q +++ L
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLK-DPEYVWVHEKAKYSTPATLEQNYIICEL 297
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSY 575
+L+ LR H+ + K +VF ++ + + + L+ +++ +H R+ Q
Sbjct: 298 HQKISVLFSFLRSHL----KKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMR 353
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R V +EF + + +L +D++ARG+D+P V V+Q P D YIHR GRT R ++G
Sbjct: 354 RMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDG 413
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSV--DP----DTKKKVERALSHVEMKNKEAAY 689
+ +L+L P EE ++ L K PV + +P D +KK+E L+ + KE A
Sbjct: 414 EALLILLPSEE--QGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQ-DQDLKERAQ 470
Query: 690 QAWLGYYNSNKKVGRDK--YKLVELA-NEYSRSMGLDNPPAI 728
+ ++ Y S + +DK + + +L EY+ S+GL P I
Sbjct: 471 RCFVSYIRSVYLM-KDKEVFNVSKLPITEYALSLGLAVAPRI 511
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 155/463 (33%), Positives = 260/463 (56%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F IS +L G+ + ++ +T +Q + LKG+DVL AKTG+GKT+AFL+P +E
Sbjct: 50 FSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILEN 109
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ + D D + L+I PTRELA Q + +YH + +VIGG L EQ
Sbjct: 110 LYRKQWSDHDG----LGALIISPTRELAIQIFEVLRKIGRYH-TFSAGLVIGGKSLKEEQ 164
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+R+ ILV TPGR+ H++ TA F T +++LVLDEAD ++DMGF+K ++ II
Sbjct: 165 ERL--GRMNILVCTPGRMLQHLDQTAFFET--YNLQMLVLDEADRIMDMGFQKTVDAIIG 220
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+P +RQTLLFSAT ++V + ++L+ D E++ E S T +++Q ++V PL
Sbjct: 221 HLPPERQTLLFSATQTKKVSDLARLSLQ-DPEYVAVHEAASSATPSKLQQHYVVTPLPQK 279
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSYRTR 578
L+ +R N + K +VF ++ R V + ++ + + +H R+ Q R
Sbjct: 280 LDTLWSFIRS----NLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLD 335
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
++ F +++ +L ++DV+ARG+D+P V VIQ+ P D + YIHR+GRT R ++G+ +
Sbjct: 336 ITTRFSQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAV 395
Query: 639 LLLAPWEEF-FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAY---QAWLG 694
L L P EE L ++ + + +V + ++ ++ L ++ K+ E Y +A++
Sbjct: 396 LFLDPSEEKGMLRRLEQKRVTVERI-NVRANKQQSIKNQLQNMCFKDPELKYLGQKAFIS 454
Query: 695 YYNSNKKVGRDK--YKLVELA-NEYSRSMGLDNPPAIPKLVLG 734
Y S + +DK + L EL ++++ S+GL P I K + G
Sbjct: 455 YVKS-VYIQKDKETFNLKELKLDDFAASLGLPGAPRI-KFIKG 495
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 614 (221.2 bits), Expect = 8.2e-60, P = 8.2e-60
Identities = 163/462 (35%), Positives = 257/462 (55%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+RF +S +LKG+++A Y +T +Q+ T+ + L+GKDVL AKTG+GKT+AFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + + D + VL+I PTRELA Q + K H ++IGG L
Sbjct: 129 EALYRLQWTSADG----LGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKH 183
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGF-ATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +R+ N ILV TPGRL H++ T F AT L ++LVLDEAD +LDMGF +
Sbjct: 184 EAERI--NNINILVCTPGRLLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNA 238
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
II +PK+RQTLLFSAT + V+ + ++LK E++ E+ T + Q ++V L
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKNP-EYVWVHEKAKYSTPATLEQNYIVCEL 297
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSY 575
+LY LR H+ + K +VF ++ + + + L+ +++ +H R+ Q
Sbjct: 298 QQKISVLYSFLRSHL----KKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMR 353
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R V +EF + + +L +D++ARG+D+P V V+Q P D YIHR GRT R ++G
Sbjct: 354 RMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDG 413
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSV--DP----DTKKKVERALSHVEMKNKEAAY 689
+ +L+L P EE ++ L K PV + +P D +KK+E L+ + KE A
Sbjct: 414 EALLILLPSEE--KGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQ-DQDLKERAQ 470
Query: 690 QAWLGYYNSNKKVGRDK--YKLVELA-NEYSRSMGLDNPPAI 728
+ ++ Y S + +DK + + +L ++Y+ S+GL P I
Sbjct: 471 RCFISYIRSVYLM-KDKEIFDVSKLPISDYALSLGLAVAPRI 511
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 613 (220.8 bits), Expect = 9.7e-60, P = 9.7e-60
Identities = 162/461 (35%), Positives = 254/461 (55%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+RF +S +LKG+++A Y +T +Q+ T+ + L+GKDVL AKTG+GKT+AFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + + D + VL+I PTRELA Q + K H ++IGG L
Sbjct: 129 EALYRLQWTSTDG----LGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKH 183
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGF-ATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +R+ N ILV TPGRL H++ T F AT L ++LVLDEAD +LDMGF +
Sbjct: 184 EAERI--NNINILVCTPGRLLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNA 238
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
II +PK+RQTLLFSAT + V+ + ++LK E+I E+ T + Q ++V L
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKNP-EYIWVHEKAKYSTPATLEQNYIVCEL 297
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSY 575
+LY LR H+ + K +VF ++ + + + L+ +++ +H R+ Q
Sbjct: 298 QQKISVLYSFLRSHL----KKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMR 353
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R V +EF + + +L +D++ARG+D+P V V+Q P D YIHR GRT R ++G
Sbjct: 354 RMEVYNEFVRKRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDG 413
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSV--DP----DTKKKVERALSHVEMKNKEAAY 689
+ +L+L P EE ++ L K PV + +P D +KK+E L+ + KE A
Sbjct: 414 EALLILLPSEE--KGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQ-DKDLKERAQ 470
Query: 690 QAWLGYYNSNKKV-GRDKYKLVEL-ANEYSRSMGLDNPPAI 728
+ ++ Y S + ++ + + L EY+ S+GL P +
Sbjct: 471 RCFVSYIRSVYLMKNKEIFDVSTLPVPEYALSLGLAVAPRV 511
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 613 (220.8 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 162/462 (35%), Positives = 256/462 (55%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+RF +S +LKG+++A Y +T +Q+ T+ + L+GKDVL AKTG+GKT+AFL+P +
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + + D + VL+I PTRELA Q + K H ++IGG L
Sbjct: 129 EALYRLQWTSTDG----LGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKH 183
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGF-ATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +R+ N ILV TPGRL H++ T F AT L ++LVLDEAD +LDMGF +
Sbjct: 184 EAERI--NNINILVCTPGRLLQHMDETICFHATNL---QMLVLDEADRILDMGFADTMNA 238
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
II +PK+RQTLLFSAT + V+ + ++LK D E++ E+ T + Q +++ L
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLK-DPEYVWVHEKAKYSTPATLEQNYIICEL 297
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSY 575
+L+ LR H+ K +VF ++ + + + L+ +++ +H R+ Q
Sbjct: 298 HQKISVLFSFLRSHLTK----KSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMR 353
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R V +EF + + +L +D++ARG+D+P V V+Q P D YIHR GRT R ++G
Sbjct: 354 RMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDG 413
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSV--DP----DTKKKVERALSHVEMKNKEAAY 689
+ +L+L P EE ++ L K PV + +P D +K++E L+ + KE A
Sbjct: 414 EALLILLPSEE--QGMVQQLLQKKVPVKEIKINPEKLIDVQKRLESFLAQ-DQDLKERAQ 470
Query: 690 QAWLGYYNSNKKVGRDK--YKLVELA-NEYSRSMGLDNPPAI 728
+ ++ Y S + +DK + + +L EY+ S+GL P I
Sbjct: 471 RCFVSYIRSVYLM-KDKEVFDVNKLPITEYALSLGLAVAPRI 511
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 161/472 (34%), Positives = 266/472 (56%)
Query: 267 SSPGKHDSFMSESRFDQCS--ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAK 324
SS K F++++ F ++A LK ++ G+ MT +Q ++ LL+GKDVLA AK
Sbjct: 54 SSETKVSEFLTKTTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAK 113
Query: 325 TGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS 384
TG+GKT+AFLLP+IE++ K ++ Q V+++ PTREL+ Q S LL+ +
Sbjct: 114 TGSGKTLAFLLPAIELLHK---LNWKQHNGTG-VIIVSPTRELSMQTYGVLSELLE-GSN 168
Query: 385 IGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444
+ +V+GG+ + E+ ++ A ILVATPGRL DH++NT F R M K L++DEAD
Sbjct: 169 LTYGLVMGGSNRSAEKDKL-AKGVSILVATPGRLLDHLQNTDNFLVRNM--KCLIIDEAD 225
Query: 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEET 504
+LD+GF ++++++ +PKQRQ++LFSAT +V ++ +AL + ++ E+ E T
Sbjct: 226 RILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEAT 285
Query: 505 HEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNV 564
E ++Q ++VAP D LL+ L++ N KV+VF ++ + +LL + +
Sbjct: 286 VEGLQQGYIVAPSDKRLLLLFTFLKK----NKTKKVMVFFSSCNSVKFHHELLNYIDIPC 341
Query: 565 REIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHR 624
IH ++ Q RT +F +++ IL+ +DV+ARG+D P V ++Q + +YIHR
Sbjct: 342 MSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHR 401
Query: 625 LGRTGRKGKEGQG--ILLLAPWEEFFLSTIKDLPILKAPVP---SVDPDTKKKVERALSH 679
+GRT R G G G +L+L P E FL +K + S + + ++E +S
Sbjct: 402 VGRTAR-GTNGSGKALLVLRPEELGFLRYLKAAKVTLNEFEFSWSKVANIQSQLENLISK 460
Query: 680 VEMKNKEA--AYQAWLGYYNSNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAI 728
NK A AY+ +L Y+S+ +D + + + S+S G PP +
Sbjct: 461 NYYLNKSAKEAYKCYLRAYDSHSL--KDIFDVTNMDLTAVSKSFGFSVPPFV 510
>POMBASE|SPBC691.04 [details] [associations]
symbol:SPBC691.04 "mitochondrial ATP-dependent RNA
helicase Mss116 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005759 "mitochondrial matrix" evidence=ISS]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC691.04 GO:GO:0005524
GO:GO:0006417 GO:GO:0008380 GO:GO:0005759 EMBL:CU329671
GO:GO:0006397 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0032543
EMBL:AB004535 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_595596.1 ProteinModelPortal:O13622 STRING:O13622
EnsemblFungi:SPBC691.04.1 GeneID:2541136 KEGG:spo:SPBC691.04
OrthoDB:EOG437VPN NextBio:20802249 Uniprot:O13622
Length = 535
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 149/421 (35%), Positives = 229/421 (54%)
Query: 285 SISALSLKGIKDAGYEKMTIVQEATL-PVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIK 343
S+S+ + AG+EKMT VQ+ L V ++ + +AKTGTGKT+AFLL + + V+K
Sbjct: 44 SLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLK 103
Query: 344 SPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRM 403
P + I +++ PTRELA Q EA L Y I V IGG E+ +
Sbjct: 104 GKPRLNSSK---IHSVILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAI 159
Query: 404 QANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVP 463
+ +L+ATPGRL DH++N + + +LDEAD L+DMGF + I I AV
Sbjct: 160 RRGNANLLIATPGRLEDHLQNPRILES--LSTDSFILDEADRLMDMGFAESILNIHEAVT 217
Query: 464 KQR-QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFP 522
+ + L FSAT+P +V + L D + IN ++ THE+V Q + LD F
Sbjct: 218 TTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFS 277
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLL-GELKLNVREIHSRKPQSYRTRVSD 581
LL++ + NP +++VF T + V +L LK+ +HS + R +++
Sbjct: 278 SSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITE 337
Query: 582 EFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLL 641
FRK + IL +DV ARG+D+P++T V+Q+ PS+ + YIHR+GRTGR GK G+ L+L
Sbjct: 338 SFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLIL 397
Query: 642 APWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKK 701
E+ FL++IK LP+ +A +++P + + + S +E +K + A Y S
Sbjct: 398 LEQEKPFLNSIKHLPLKRA---TIEPLSDQALSTLRSDIEKSSKFSRTNALKTLYGSKPH 454
Query: 702 V 702
V
Sbjct: 455 V 455
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 599 (215.9 bits), Expect = 4.7e-58, P = 4.7e-58
Identities = 161/462 (34%), Positives = 256/462 (55%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
RF +S +LKG+++A Y +T +Q T+ + L+GKDVL AKTG+GKT+AF++P++E
Sbjct: 74 RFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
++ + D + VL+I PTRELA Q + K H ++IGG L E
Sbjct: 134 LLYRLQWTSADG----LGVLIISPTRELAFQTFKVLRKVGKNH-DFSAGLIIGGKDLKEE 188
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+R+ + +L+ TPGRL H++ T+ F +++L+LDEAD +LDMGF + II
Sbjct: 189 SERI--HHINMLICTPGRLLQHMDETSYFYAS--DLQMLILDEADRILDMGFADTMNAII 244
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+PK+RQTLLFSAT + V+ + ++LK D E++ E+ T + Q ++V L
Sbjct: 245 ENLPKKRQTLLFSATQTKSVKDLARLSLK-DPEYVWVHEKAKFSTPATLDQNYIVCELQH 303
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSYRT 577
+LY LR H+ + K +VF + + + + +L+ L V +H ++ Q R
Sbjct: 304 KINVLYSFLRSHL----KKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRM 359
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
V F + K +L +D++ARG+D+P V VIQ P D YIHR+GRT R + G+
Sbjct: 360 EVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEA 419
Query: 638 ILLLAPWEEFFLSTIKDLPILKAPVPSV--DP----DTKKKVERALSHVEMKNKEAAYQA 691
+L+L P EE ++ L K PV + +P D +K+++ L+ + + KE A +
Sbjct: 420 LLVLLPSEE--KGMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQ-DQELKEKAQRC 476
Query: 692 WLGYYNS-----NKKVGRDKYKLVELANEYSRSMGLDNPPAI 728
++ Y S NK+V D +KL LA EY+ S+GL P +
Sbjct: 477 FVSYLRSVYLMKNKEVF-DVFKL-PLA-EYALSLGLAMAPRV 515
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 599 (215.9 bits), Expect = 4.7e-58, P = 4.7e-58
Identities = 161/462 (34%), Positives = 256/462 (55%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
RF +S +LKG+++A Y +T +Q T+ + L+GKDVL AKTG+GKT+AF++P++E
Sbjct: 74 RFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
++ + D + VL+I PTRELA Q + K H ++IGG L E
Sbjct: 134 LLYRLQWTSADG----LGVLIISPTRELAFQTFKVLRKVGKNH-DFSAGLIIGGKDLKEE 188
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+R+ + +L+ TPGRL H++ T+ F +++L+LDEAD +LDMGF + II
Sbjct: 189 SERI--HHINMLICTPGRLLQHMDETSYFYAS--DLQMLILDEADRILDMGFADTMNAII 244
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+PK+RQTLLFSAT + V+ + ++LK D E++ E+ T + Q ++V L
Sbjct: 245 ENLPKKRQTLLFSATQTKSVKDLARLSLK-DPEYVWVHEKAKFSTPATLDQNYIVCELQH 303
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSYRT 577
+LY LR H+ + K +VF + + + + +L+ L V +H ++ Q R
Sbjct: 304 KINVLYSFLRSHL----KKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRM 359
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
V F + K +L +D++ARG+D+P V VIQ P D YIHR+GRT R + G+
Sbjct: 360 EVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEA 419
Query: 638 ILLLAPWEEFFLSTIKDLPILKAPVPSV--DP----DTKKKVERALSHVEMKNKEAAYQA 691
+L+L P EE ++ L K PV + +P D +K+++ L+ + + KE A +
Sbjct: 420 LLVLLPSEE--KGMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQ-DQELKEKAQRC 476
Query: 692 WLGYYNS-----NKKVGRDKYKLVELANEYSRSMGLDNPPAI 728
++ Y S NK+V D +KL LA EY+ S+GL P +
Sbjct: 477 FVSYLRSVYLMKNKEVF-DVFKL-PLA-EYALSLGLAMAPRV 515
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 154/482 (31%), Positives = 264/482 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + +S + KG++D+ +E +T +Q +P+ LKG+D+L AKTG+GKT+AFL+P +E
Sbjct: 51 FAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEK 110
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ + ++ + + LV+ PTRELA Q + ++H +VIGG + E
Sbjct: 111 LYR----EQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHH-LFSAGLVIGGKSVREEA 165
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ + IL+ TPGR+ H++ T GF +++LVLDEAD ++D+GF++D++ ++
Sbjct: 166 EALSR--MNILIGTPGRILQHLDQTHGFDVD--NLQLLVLDEADRIMDLGFQRDVDALVQ 221
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+P RQTLLFSAT ++V + ++LK D E+++ E + T ++Q ++V PL
Sbjct: 222 HLPTTRQTLLFSATQSKKVSDLARLSLK-DPEYVSVHAEATTATPSTLQQHYIVTPLPEK 280
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSYRTR 578
L+ ++ N + K++VF ++ R V + +++ + + +H R+ Q R
Sbjct: 281 LDTLWGFIKA----NLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLD 336
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V+ F SK L +DV ARG+D+ V V+QV P D + YIHR+GRT R +EG+ +
Sbjct: 337 VTKRFDSSKHACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAV 396
Query: 639 LLLAPWEEFFLSTIKDLPILKAPVPSVDP-DTKKK-VERALSHVEMKNKEAAY---QAWL 693
+ L P EE +K L K P+ V D+KKK + L + K+ + Y +A++
Sbjct: 397 IFLDPSEE--AGMLKRLERKKVPITKVTAKDSKKKSIRDELQSICWKSHDVKYLAQKAFI 454
Query: 694 GYYNS-NKKVGRDK---------YKLVELANE-YSRSMGLDNPPAIPKLVLGK--MGLRN 740
Y + ++ RD+ +K +L E +++SMGL P I K G+ ++N
Sbjct: 455 SYARAVHRATERDEKHNENSDQVFKFDKLDLEGFAKSMGLAGAPQI-KFQKGEDVKRMKN 513
Query: 741 IP 742
P
Sbjct: 514 AP 515
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 597 (215.2 bits), Expect = 7.9e-58, P = 7.9e-58
Identities = 154/457 (33%), Positives = 246/457 (53%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F +S +LKG+ +A Y + T +Q T+ L+G+DVL AKTG+GKT+AFL+P +E
Sbjct: 71 KFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLE 130
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+ + D + L+I PTRELA Q + K H +VIGG L E
Sbjct: 131 CLYREQWTAMDG----LGALIISPTRELAYQTFEVLRKVGKNH-EFSAGLVIGGKDLKDE 185
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+++ I++ TPGRL H++ TA F + +LVLDEAD +LDMGF + I+
Sbjct: 186 SEKIHRT--NIIICTPGRLLQHMDETATF--HASDLHMLVLDEADRILDMGFADTLNAIV 241
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+PK RQTLLFSAT V+ + ++LK D E++ E+ T + Q ++V L
Sbjct: 242 ENLPKSRQTLLFSATQTRSVKDLARLSLK-DPEYVWVHEQAKFSTPATLEQNYVVCELHQ 300
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSYRT 577
+LY LR H+ + K++VF + + + L+ ++V +H ++ Q R
Sbjct: 301 KVNMLYSFLRSHL----QKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRV 356
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
V ++F + +L +D++ARG+D+P V V+Q P D YIHR+GRT R + G+
Sbjct: 357 EVYNDFVRKTSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEA 416
Query: 638 ILLLAPWEEF-FLSTI--KDLPILKAPV-PSVDPDTKKKVERALSHVEMKNKEAAYQAWL 693
+L+L P EE +S + K +PI K V P ++K+E L+ E + KE A + ++
Sbjct: 417 LLVLLPSEEKGMISQLQEKKVPINKIQVNPEKLMSVQQKLEAFLAQ-EKEQKERAQRCFV 475
Query: 694 GYYNSNKKV-GRDKYKLVELA-NEYSRSMGLDNPPAI 728
Y S + +D + +++L EY+ S+GL P +
Sbjct: 476 SYLRSVYLMKNKDVFDVLQLKLPEYAMSLGLAVAPRV 512
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 142/453 (31%), Positives = 255/453 (56%)
Query: 285 SISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKS 344
++S +L+ IK+ G+ +MT +Q +L LLKG+D++ A+TG+GKT+AFL+P++E++ K
Sbjct: 193 AVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKL 252
Query: 345 PPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQ 404
R R V++I PTREL+ Q L+ +H +V+GG+ +E +++
Sbjct: 253 ----RFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHT-YGLVMGGSNRQVESEKL- 306
Query: 405 ANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK 464
ILVATPGRL DH++N+ F + ++ L++DE D +L++GF +++++II +PK
Sbjct: 307 GKGINILVATPGRLLDHLQNSPDFLYK--NLQCLIIDEVDRILEIGFEEELKQIINLLPK 364
Query: 465 QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLL 524
+RQT+LFSAT + + +ALK + ++ + T + + Q ++V P + +L
Sbjct: 365 RRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVL 424
Query: 525 YVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR 584
+ L++ N + KV+VF ++ M + +L + L V IH ++ Q+ RT +F
Sbjct: 425 FTFLKK----NRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFC 480
Query: 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR-KGKEGQGILLLAP 643
++ IL+ +DV+ARG+D P V ++Q P D +YIHR+GRT R G G +LL+ P
Sbjct: 481 NAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRP 540
Query: 644 WEEFFLSTIKDLPILKAPVPSVD------PDTKKKVERALSHVEMKNKEA--AYQAWLGY 695
E FL +K K P+ + D + ++E+ ++ N+ A A+++++
Sbjct: 541 EELGFLRYLK---AAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRA 597
Query: 696 YNSNKKVGRDKYKLVELANEYSRSMGLDNPPAI 728
Y+S++ ++L ++S G PP +
Sbjct: 598 YDSHQLKQIFNVNTLDL-QAVAKSFGFLVPPVV 629
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 151/404 (37%), Positives = 216/404 (53%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
++F + +++ LK I++AGYE T +Q +P L+G+DVL A+TGTGKT +F LP I
Sbjct: 2 TKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI 61
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
++ + R + R P LV+CPTRELA Q A T K H + ++IGG
Sbjct: 62 TLLARG----RARARMP-RSLVLCPTRELAAQVAENFDTYTK-HLKLTKALLIGGVSFK- 114
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
EQ + +L+ATPGRL DH E G L GV+++V+DEAD +LDMGF DIE+I
Sbjct: 115 EQDALIDRGVDVLIATPGRLLDHFER--G-KLLLTGVQIMVVDEADRMLDMGFIPDIERI 171
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
+ P RQTL FSAT+ E+ +I + L + + ET EQ + + D
Sbjct: 172 FSLTPFTRQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRD 231
Query: 519 LHFPLLYVLLREHVADNPEY--KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYR 576
+LR + E ++FC +VA L + + IH QS R
Sbjct: 232 REASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQR 291
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636
TR D FR+ K +LV SDV+ARG+D P V+ V +P E Y+HR+GRTGR G++G+
Sbjct: 292 TRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGK 351
Query: 637 GILLLAPWEEFFLSTI-----KDLPILKAPVPSVD-PDTKKKVE 674
I L P +E L I KD+P L+ P + + P+ K + E
Sbjct: 352 AITLCIPRDEKALDAIEKLIQKDIPRLENPARTEEKPEAKPRRE 395
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 153/464 (32%), Positives = 253/464 (54%)
Query: 273 DSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVA 332
+ F SE +F++ +I KG+K+ + +T +Q +P L GKD+L AKTG+GKT+A
Sbjct: 142 EHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLA 201
Query: 333 FLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIG 392
FL+PSI ++ + ++ VL+I PTREL Q L KY P ++IG
Sbjct: 202 FLVPSINILYNIKFLPKNGTG----VLIISPTRELCLQIYQVCKDLCKYIPQTN-GIIIG 256
Query: 393 GTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFR 452
G E+K+ + IL+ATPGRL DH++NT F + + L++DEAD LL +GF
Sbjct: 257 GMSRNEEKKKF-IHGINILIATPGRLLDHMQNTKEFIYK--NLICLIIDEADRLLQIGFE 313
Query: 453 KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
++I II +PK+RQT LFSAT +V + ++L++ FI + + T E+++Q +
Sbjct: 314 EEINLIIKRLPKKRQTALFSATQTTKVESLIRLSLQKPI-FIEVTTKIA--TVERLQQGY 370
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ D F LL+ L+++++ K++VF M + DLL + + IH +K
Sbjct: 371 ALVDEDKRFLLLFTFLKKNMSK----KIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKK 426
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR-K 631
Q+ R + +F +K IL+ ++V+ARG+D P+V +IQ P D ++YIHR+GRT R +
Sbjct: 427 QNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQ 486
Query: 632 GKEGQGILLLAPWEEFFLSTIK--DLPILKAPVPSVDPDTKKKVERALSHVEMKN---KE 686
G I+ L E FL+ +K ++PI + + DP+ ++ + + KN +
Sbjct: 487 DSNGSAIIFLMKHELKFLNYLKFYNIPINQF---AYDPNKLINIQSHIQSIVTKNFHLHK 543
Query: 687 AAYQAWLGYYNSNKKVG-RDKYKLVELANEY-SRSMGLDNPPAI 728
A +A+ Y N +D + + L S++ GL+ PP +
Sbjct: 544 MAREAFKSYLNGYITYALKDVFDVNNLNLLLTSKNFGLEVPPKV 587
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 153/464 (32%), Positives = 253/464 (54%)
Query: 273 DSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVA 332
+ F SE +F++ +I KG+K+ + +T +Q +P L GKD+L AKTG+GKT+A
Sbjct: 142 EHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLA 201
Query: 333 FLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIG 392
FL+PSI ++ + ++ VL+I PTREL Q L KY P ++IG
Sbjct: 202 FLVPSINILYNIKFLPKNGTG----VLIISPTRELCLQIYQVCKDLCKYIPQTN-GIIIG 256
Query: 393 GTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFR 452
G E+K+ + IL+ATPGRL DH++NT F + + L++DEAD LL +GF
Sbjct: 257 GMSRNEEKKKF-IHGINILIATPGRLLDHMQNTKEFIYK--NLICLIIDEADRLLQIGFE 313
Query: 453 KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
++I II +PK+RQT LFSAT +V + ++L++ FI + + T E+++Q +
Sbjct: 314 EEINLIIKRLPKKRQTALFSATQTTKVESLIRLSLQKPI-FIEVTTKIA--TVERLQQGY 370
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ D F LL+ L+++++ K++VF M + DLL + + IH +K
Sbjct: 371 ALVDEDKRFLLLFTFLKKNMSK----KIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKK 426
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR-K 631
Q+ R + +F +K IL+ ++V+ARG+D P+V +IQ P D ++YIHR+GRT R +
Sbjct: 427 QNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQ 486
Query: 632 GKEGQGILLLAPWEEFFLSTIK--DLPILKAPVPSVDPDTKKKVERALSHVEMKN---KE 686
G I+ L E FL+ +K ++PI + + DP+ ++ + + KN +
Sbjct: 487 DSNGSAIIFLMKHELKFLNYLKFYNIPINQF---AYDPNKLINIQSHIQSIVTKNFHLHK 543
Query: 687 AAYQAWLGYYNSNKKVG-RDKYKLVELANEY-SRSMGLDNPPAI 728
A +A+ Y N +D + + L S++ GL+ PP +
Sbjct: 544 MAREAFKSYLNGYITYALKDVFDVNNLNLLLTSKNFGLEVPPKV 587
>TAIR|locus:2160225 [details] [associations]
symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
Length = 739
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 154/492 (31%), Positives = 269/492 (54%)
Query: 251 SLIGLDKENGGMSVAISSPGKHDSFMSE----SRFDQCSISALSLKGIKDAGYEKMTIVQ 306
SL L K++ + S GK+ + S +F Q IS + +G+KDA Y MT VQ
Sbjct: 42 SLRPLPKDS---KIGKSEDGKNGTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQ 98
Query: 307 EATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRE 366
A +P L G+D+L A+TG+GKT+AF++P +E + + +R + ++I PTRE
Sbjct: 99 SAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHR----ERWSPEDGVGCIIISPTRE 154
Query: 367 LATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTA 426
LA Q + + K+H ++IGG R ++ ++ + + ILV PGRL H++ T
Sbjct: 155 LAAQTFGVLNKVGKFH-KFSAGLLIGG-REGVDVEKERVHEMNILVCAPGRLLQHMDETP 212
Query: 427 GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486
F + ++L+LDEAD +LD F+ ++ II+ +PK RQTLLFSAT ++V+ + ++
Sbjct: 213 NFECPQL--QILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLS 270
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTT 546
L RD E+I+ E T + Q ++ P++ +L+ ++ H+ ++LVF +T
Sbjct: 271 L-RDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNS----RILVFLST 325
Query: 547 AMVTRMVADLLGELK--LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP 604
+ V + +L+ + ++ +H + Q R V +F + + ++ T DV ARG+D+
Sbjct: 326 KKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQSVLFCT-DVLARGLDFD 384
Query: 605 D-VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVP 663
V V+QV P D YIHR+GRT R +G+ +L L P EE + +++ K P+
Sbjct: 385 KAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEA---KVPIK 441
Query: 664 SVDPDTKK--KVERALSHVEMKNKE---AAYQAWLGYYNS-NKKVGRDKYKLVELANE-Y 716
+ + +K +V R L+ + +K + A +A++ Y S +K+ ++ + + +L+ E +
Sbjct: 442 LIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKRRDKEIFDVSKLSIENF 501
Query: 717 SRSMGLDNPPAI 728
S S+GL P I
Sbjct: 502 SASLGLPMTPRI 513
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 548 (198.0 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 141/393 (35%), Positives = 208/393 (52%)
Query: 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLL 335
M+E+ F ++ LK + ++GY T +Q +P +L G DV A+TGTGKT AF+L
Sbjct: 1 MTETTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVL 60
Query: 336 PSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTR 395
P I+ + R + R P L++CPTRELA Q A KY + + ++IGG
Sbjct: 61 PMIQRL----STGRARARMP-RCLILCPTRELAAQVAENFEKYGKYL-KLTMALLIGGVS 114
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
EQ+ + +L+ATPGRL D + G +MGV+ L++DEAD +LDMGF DI
Sbjct: 115 FK-EQETLLQRGVDVLIATPGRLMDQFDR--G-KLLMMGVETLIIDEADRMLDMGFIPDI 170
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
EKI A +P RQTLLFSAT P +++++ ++D + I +T E + Q +
Sbjct: 171 EKICAKLPANRQTLLFSATFPTDIQRLAK-TFQKDPKKIEVTRPA--QTAETISQFVVKL 227
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
P + L R A N + + VFC + +VA L + + IH PQS
Sbjct: 228 PTNDGKARRTALRRVIEATNVKNGI-VFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSV 286
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R+ FR K +LV SDV+ARG+D PDV V G P E Y+HR+GRTGR G+ G
Sbjct: 287 RSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTG 346
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSVDPD 668
+ ++ P ++ + + ++K VP P+
Sbjct: 347 ESYTVVTPADDKSWGFV--VKMIKKDVPEFMPE 377
Score = 39 (18.8 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 654 DLPILKAPVPSVDPDTKKKVERALSHVEMKNKEA 687
D+ + APV +V +T + E A + K + A
Sbjct: 437 DVAVADAPVETVATETVEAAEPAAVQEKPKRERA 470
>ASPGD|ASPL0000054998 [details] [associations]
symbol:AN0894 species:162425 "Emericella nidulans"
[GO:0000373 "Group II intron splicing" evidence=IEA] [GO:0034337
"RNA folding" evidence=IEA] [GO:0000372 "Group I intron splicing"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EnsemblFungi:CADANIAT00001763
HOGENOM:HOG000204197 OMA:DDEVPTH Uniprot:C8VUS9
Length = 641
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 174/467 (37%), Positives = 247/467 (52%)
Query: 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPV----DRDQRR-P 354
E MT VQ T+ +KG D+LA+AKTGTGKTVAFL+P +E ++ + R+ R+
Sbjct: 103 ETMTEVQRRTILESVKGGDMLAQAKTGTGKTVAFLIPVVEKLLGDRSLLKTSYRNGRKIA 162
Query: 355 PILV--LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT--RLALEQKRMQANPCQI 410
PI + +VI PTRELA Q A EA L+ + VQV +GGT R AL Q +Q C I
Sbjct: 163 PIDIRAIVISPTRELAEQIAVEAKRLVA-RTGLQVQVAVGGTMKRAALHQ--LQREGCHI 219
Query: 411 LVATPGRLRDHIEN-TAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK----Q 465
LVATPGRL+D + + T+G R + VLDEAD LLD GF ++ +I +P
Sbjct: 220 LVATPGRLKDLLTDPTSG--VRAPKLNTFVLDEADRLLDEGFAPELMEIQHRLPDPAEVD 277
Query: 466 RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP-LDLHFPLL 524
RQTL+FSATV EV + +KRD F+ V + TH V Q ++ L+ P L
Sbjct: 278 RQTLMFSATVAPEVMGMVRSTMKRDFRFVKCVRDDEVPTHMSVPQKAVILQGLENAMPTL 337
Query: 525 YVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR 584
L+++ +K +V+ + T + +L + RTRV++ FR
Sbjct: 338 LELVKKSYDPRSTFKAIVYFGSTRETNTAFEAFDQLL------------AQRTRVANWFR 385
Query: 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW 644
K + IL ++DV+ARG+D+P+VT VIQ+G+P RE YIHRLGRT R GK GQG + +
Sbjct: 386 KCQSGILFSTDVTARGMDFPNVTHVIQIGVPKTREDYIHRLGRTARAGKTGQGWIFI--- 442
Query: 645 EEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGR 704
E + T++ L + PV VD +T L+ A + L + +V R
Sbjct: 443 HEQQMGTLRKL-LRDIPV-EVDRETLTIPSLKLTEESPSTTPEATETLLQMKSGFAQVSR 500
Query: 705 -DKYK--LVELANEYS--RSMGLDNPPAIPKLVLGKMGLRNIPGLRS 746
K + L +L+N R+ L AI L + GLR+ P + S
Sbjct: 501 ATKSETCLAQLSNLVGSFRNRSLLRE-AITNLAIHGYGLRDAPHIPS 546
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 134/391 (34%), Positives = 219/391 (56%)
Query: 256 DKENGGMSVAISSPG-KHDSFMS--ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
D+E A + G K S M+ S F ++S LKG+ + G+E T +Q+ T+P+
Sbjct: 233 DEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPL 292
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372
L GKD++ A TG+GKT AF++P +E ++ P ++ P VL++CPTRELA Q
Sbjct: 293 ALLGKDIVGAAVTGSGKTAAFIVPILERLLYRP-----KKVPTTRVLILCPTRELAMQCH 347
Query: 373 TEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRL 432
+ A+ + + I V + IGG L L+++ ++ P I++ATPGR DH+ N+ GF
Sbjct: 348 SVATKIASF-TDIMVCLCIGGLSLKLQEQELRKRP-DIVIATPGRFIDHMRNSQGFTVE- 404
Query: 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRD-H 491
++++V+DEAD +L+ GF ++ +II A PK RQT+LFSAT+ ++V + ++L R
Sbjct: 405 -NIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVR 463
Query: 492 EFINTVEEGSEE-THEQVRQMHLVAPL-DLHFPLLYVLLREHVADNPEYKVLVFCTTAMV 549
F++ + ++ T E VR V P +L P + + L + + + ++F +
Sbjct: 464 VFVDNKKTTAKLLTQEFVR----VRPQRELLRPAMLIYLCKELFHR---RTIIFFRSKAF 516
Query: 550 TRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLV 609
+ + G L LN EIH Q R R ++FR K L+ +DV++RG+D + +V
Sbjct: 517 AHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVV 576
Query: 610 IQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
I P+ E Y+HR+GRT R G+ G+ I L
Sbjct: 577 INYEAPATHEVYLHRVGRTARAGRSGRAITL 607
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 146/380 (38%), Positives = 216/380 (56%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
RF+ S L+ I D GY+KMT +Q+ +P + +G+DVLA A+TGTGKT AF LP ++
Sbjct: 2 RFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
++++P + + VL++ PTRELA Q A KY + V + GG ++ +
Sbjct: 62 KMVENPS---ETLKSNTRVLILTPTRELAAQVAENVEAYSKYL-NFSVLTIYGGVKVETQ 117
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
++++ I+VATPGRL +H+ TA + L V LVLDEAD +LDMGF DI+KI+
Sbjct: 118 AQKLKRG-ADIIVATPGRLLEHL--TACNLS-LSSVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
AV K+RQ LLFSAT V+++ + + + + I+ ++ + T + V Q+ V P++
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANEMMIKP-QVISADKQNT--TADTVSQV--VYPVEQ 228
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD-LLGELKLN---VREIHSRKPQSY 575
LL E + +VLVF TA TR AD L+ EL L+ +H K Q
Sbjct: 229 RRKR--ELLSELIGKKNWQQVLVF--TA--TRDAADTLVKELNLDGIPSEVVHGEKAQGS 282
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R R EF K +LV ++V+ARG+D P + V+ LP E Y+HR+GRTGR GK G
Sbjct: 283 RRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSG 342
Query: 636 QGILLLAPWEEFFLSTIKDL 655
I ++ EE L+ I+ L
Sbjct: 343 VAISFVSREEERTLADIEKL 362
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 145/387 (37%), Positives = 206/387 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +SA LK I++ GY + +Q +P +L GKDV+A A+TGTGKT F LP +E+
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ K P V +Q R L++ PTRELA Q L H + VV GG ++ +
Sbjct: 63 LAKGPKVRANQVR----ALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQM 117
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+RM ILVATPGRL D A + +++LVLDEAD +LDMGF +DI KI+
Sbjct: 118 QRM-CKGADILVATPGRLMDLYNQNA---VKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+P++RQ LLFSAT E+R++ + E + + T EQ + P D+
Sbjct: 174 LLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-----IYPADVK 228
Query: 521 F-PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
P + V L V + +VLVF T +A L E L IH K Q RTR
Sbjct: 229 KKPDMLVKL---VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRA 285
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
+F+ + ILV +D++ARG+D P + V+ LP E Y+HR+GRTGR G+ G+ I
Sbjct: 286 LADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAIS 345
Query: 640 LLAPWEEFFLSTIKDLPILKAPVPSVD 666
L++ E L I+ L +A +P V+
Sbjct: 346 LVSAIEAPELFAIERLT--QALLPRVN 370
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 145/387 (37%), Positives = 206/387 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +SA LK I++ GY + +Q +P +L GKDV+A A+TGTGKT F LP +E+
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ K P V +Q R L++ PTRELA Q L H + VV GG ++ +
Sbjct: 63 LAKGPKVRANQVR----ALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQM 117
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+RM ILVATPGRL D A + +++LVLDEAD +LDMGF +DI KI+
Sbjct: 118 QRM-CKGADILVATPGRLMDLYNQNA---VKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+P++RQ LLFSAT E+R++ + E + + T EQ + P D+
Sbjct: 174 LLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-----IYPADVK 228
Query: 521 F-PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
P + V L V + +VLVF T +A L E L IH K Q RTR
Sbjct: 229 KKPDMLVKL---VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRA 285
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
+F+ + ILV +D++ARG+D P + V+ LP E Y+HR+GRTGR G+ G+ I
Sbjct: 286 LADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAIS 345
Query: 640 LLAPWEEFFLSTIKDLPILKAPVPSVD 666
L++ E L I+ L +A +P V+
Sbjct: 346 LVSAIEAPELFAIERLT--QALLPRVN 370
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 520 (188.1 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 135/394 (34%), Positives = 216/394 (54%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
+K IK AG++K T +Q P++L+G D++ A+TGTGKT+++L+P + + S PV R
Sbjct: 236 MKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGF-IHLNSQPVSRG 294
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
+R P + LV+ PTRELA Q E S Y V + GG R Q M+ I
Sbjct: 295 KRNGPGM-LVLTPTRELALQVGAECSKY-SYKGLKSVCIYGGGNRKGQIQDIMKG--VDI 350
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
++ATPGRL D N F L + LVLDEAD +LD+GF I KI+ V RQT++
Sbjct: 351 IIATPGRLNDLQMNN--FVN-LRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIM 407
Query: 471 FSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
SAT P+ +RQ+ H LK ++ T++ + +T V+Q ++ + L L+
Sbjct: 408 TSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDT---VKQNIIITTEEEKRSLFQEFLQ 464
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+P+ KV+VF + ++ ++ L + V+ +H + QS R R D+F+ K
Sbjct: 465 SL---SPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVK 521
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL 649
IL+ +D+++RG+D DVT V P + E+Y+HR+GRTGR GK G+ + L+ +++ +
Sbjct: 522 ILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQ-DDWKV 580
Query: 650 STIKDLPILKAPVPSVDPDTKKKVERALSHVEMK 683
+ + + IL+ S+ D E+ H + K
Sbjct: 581 AG-ELIEILQRANQSIPEDLLSMAEQYKLHKQEK 613
Score = 44 (20.5 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 80 AASSEFGRRGSRAGEIRGSKNLID-DE--AELSDW 111
A+ GR SR +R ++ LID D+ AE+ +W
Sbjct: 131 ASQPSVGRGLSRDNSVREAQPLIDWDQIKAEVVEW 165
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 520 (188.1 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 135/394 (34%), Positives = 216/394 (54%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
+K IK AG++K T +Q P++L+G D++ A+TGTGKT+++L+P + + S PV R
Sbjct: 227 MKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGF-IHLNSQPVSRG 285
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
+R P + LV+ PTRELA Q E S Y V + GG R Q M+ I
Sbjct: 286 KRNGPGM-LVLTPTRELALQVGAECSKY-SYKGLKSVCIYGGGNRKGQIQDIMKG--VDI 341
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
++ATPGRL D N F L + LVLDEAD +LD+GF I KI+ V RQT++
Sbjct: 342 IIATPGRLNDLQMNN--FVN-LRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIM 398
Query: 471 FSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
SAT P+ +RQ+ H LK ++ T++ + +T V+Q ++ + L L+
Sbjct: 399 TSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDT---VKQNIIITTEEEKRSLFQEFLQ 455
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+P+ KV+VF + ++ ++ L + V+ +H + QS R R D+F+ K
Sbjct: 456 SL---SPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVK 512
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL 649
IL+ +D+++RG+D DVT V P + E+Y+HR+GRTGR GK G+ + L+ +++ +
Sbjct: 513 ILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQ-DDWKV 571
Query: 650 STIKDLPILKAPVPSVDPDTKKKVERALSHVEMK 683
+ + + IL+ S+ D E+ H + K
Sbjct: 572 AG-ELIEILQRANQSIPEDLLSMAEQYKLHKQEK 604
Score = 44 (20.5 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 80 AASSEFGRRGSRAGEIRGSKNLID-DE--AELSDW 111
A+ GR SR +R ++ LID D+ AE+ +W
Sbjct: 123 ASQPSVGRGLSRDNSVREAQPLIDWDQIKAEVVEW 157
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 160/456 (35%), Positives = 236/456 (51%)
Query: 282 DQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVV 341
D +SA LK +K GY+ +T +Q+ +PV+ +G D+LA A+TGTGKT AF LP ++ +
Sbjct: 4 DSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAI 63
Query: 342 IK------SPPVDRDQRRPP--------ILVLVICPTRELATQAATEASTLLKYHPSIGV 387
K S D+ I L++ PTRELA Q A +Y P I
Sbjct: 64 AKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLP-IKS 122
Query: 388 QVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL 447
VV GG ++A Q +M +LVATPGRL +H+ A L VK LVLDEAD +L
Sbjct: 123 GVVYGGGKMA-SQTKMLKQGLDVLVATPGRLLEHL---ALRNVDLSQVKFLVLDEADRML 178
Query: 448 DMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQ 507
DMGF DIEK++ AV + QTL+FSAT + V+ + + LK + I+ +E + T +
Sbjct: 179 DMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSP-KTISVSKENT--TSGK 235
Query: 508 VRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN-VRE 566
++Q A + LL E + N +VLVF T +A ELKL+ ++
Sbjct: 236 IKQ----AVYWVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAK---ELKLDGIKA 288
Query: 567 I--HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHR 624
H K Q R + ++F + K +LV +DV+ARG+D PD+ V+ LP E Y+HR
Sbjct: 289 ALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHR 348
Query: 625 LGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKN 684
+GRTGR GK G I L++P +E FL I+ L I + V P + A + E
Sbjct: 349 VGRTGRAGKSGTAISLVSPKDERFLENIEQL-IERKFERIVAPGYEFNRLEASEYQEATV 407
Query: 685 KEAAYQAWLGYYNSNKKVGRDKYKLVELA-NEYSRS 719
K + + N+ + + K+ L+ N+ +R+
Sbjct: 408 KRDSKNRYRAAQEKNQNLAKKDVKIKSLSKNKTART 443
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 145/457 (31%), Positives = 239/457 (52%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
RF+ +S +L+G+KD Y K T +Q T+ L G DV+ AKTG+GKT+A ++P +E
Sbjct: 77 RFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLE 136
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+ ++ D + L+I PTRELA Q + + + +H +VIGG+ +A E
Sbjct: 137 ALWRAK-WSPDYG---LGALIISPTRELALQTFSTINAVGAHH-GFSCGLVIGGSDVAFE 191
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ R+ I+V TPGRL H++ A + ++VLVLDEAD +LDMGF K + II
Sbjct: 192 RNRISG--INIIVCTPGRLLQHMDENAQMSCD--SLQVLVLDEADRMLDMGFSKQLNSII 247
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+P +RQTLLFSAT V+ +C + D F++ E S T + ++Q +++ +
Sbjct: 248 NNLPAERQTLLFSATQTRNVKDLCRVCTN-DPVFVSVHENASAATPDNLKQSYVIVEEEH 306
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVREIHSRKPQSYRT 577
L+ + H + K LVF ++ R + + +L+ L V + Q R
Sbjct: 307 KINALWSFIEAH----RKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRI 362
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
+F +SK +L+ +DV++RG+D+ + VIQV P+ + YIHR+GR+ R G
Sbjct: 363 ETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNS 422
Query: 638 ILLLAP-WEEFFLSTIK--DLPILKAPV-PSVDPDTKKKVERALSHVEMKNKEAAYQAWL 693
+L+++P EE + ++ +PI + + P D + K+ RA+ + KE A ++ +
Sbjct: 423 LLMVSPSQEEAMIGKLEKHSIPIEELKIHPDAMSDVRVKL-RAILAESQELKEYAQKSIV 481
Query: 694 GYYNSNKKVGRDKYKLVEL--ANEYSRSMGLDNPPAI 728
Y S + K VE A + S GL + P +
Sbjct: 482 AYLRSIYTMKDKKVFDVEAIDAAALADSFGLVSVPRV 518
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 133/387 (34%), Positives = 212/387 (54%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ ++D G+++MT VQ AT+P+ + KDV A+A TG+GKT+AF++P +E++++ +
Sbjct: 21 LRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + ++I PTRELA Q + K+ P ++IGG + ++ + + I
Sbjct: 78 LKKMQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNI 137
Query: 411 LVATPGRLRDHIENTAG---FATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A A+ + + VLVLDEAD LLDMGF + I+A +PKQR+
Sbjct: 138 IVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ I+ E+G +++T ++ +++ D F
Sbjct: 198 TGLFSATQTQEVENLVRAGL-RNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVS 580
L LR+H + K LVF +T L L ++ + IH K + R ++
Sbjct: 257 QLVHFLRQHKQE----KHLVFFSTCACVEYYGKALESLIKQVKIMCIHG-KMKHKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFR+ G ILV +DV ARG+D P+V V+Q PS ++HR GRT R G G ++
Sbjct: 312 TEFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVF 371
Query: 641 LAPWEEFFLSTIKDLPILKAPVPSVDP 667
L P EE +++ + K P+ + P
Sbjct: 372 LLPMEESYINFLSINQ--KCPMQEMQP 396
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 128/400 (32%), Positives = 226/400 (56%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F+ S+S LKG+ GY K + +Q AT+P+ L GKD++A A TG+GKT AF++P IE
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++ P R V+V+ PTRELA Q A + ++ I + +GG L ++
Sbjct: 293 LLYKPAKIASTR-----VIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQE 347
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ +++ P I++ATPGR DHI N+A F + V++LV+DEAD +L+ GF+ ++ +I+
Sbjct: 348 QMLKSRP-DIVIATPGRFIDHIRNSASF--NVDSVEILVMDEADRMLEEGFQDELNEIMG 404
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEF-INTVEEGSEE-THEQVRQMHLVAPLD 518
+P RQ LLFSAT+ +++ + ++LK+ I+ ++ + + T E VR + D
Sbjct: 405 LLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVR----IRKRD 460
Query: 519 LHFP-LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
P LL+ L+R+ + + +++VF + ++G L ++V E+H Q R
Sbjct: 461 HLKPALLFNLIRK-LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRL 519
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
++F+ + +L+ +D+++RG+D P + +VI +P E Y+HR+GRT R G+EG+
Sbjct: 520 DSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRS 579
Query: 638 ILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERAL 677
+ + + +D I++A + SV+ + +AL
Sbjct: 580 VTFVG-------ESSQDRSIVRAAIKSVEENKSLTQGKAL 612
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 514 (186.0 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 132/436 (30%), Positives = 237/436 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + +S+ ++ + G ++ T VQ +P +L+G+D L AKTG+GKT AF+LP ++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P I LV+ PTRELA Q A + L K P +G++ +++GG +
Sbjct: 64 LSEDPY--------GIFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCIIVGGMDMVA 112
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P +++ATPGRL DH+ ++ F+ + ++ LV+DEAD LL+ G F D+
Sbjct: 113 QALELSRKP-HVVIATPGRLADHLRSSNTFSIKK--IRFLVMDEADRLLEQGCTDFTVDL 169
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E I+AAVP +RQTLLFSAT+ + +R++ +A + F + T EQ+ Q +L+
Sbjct: 170 EAILAAVPARRQTLLFSATLTDTLRELQGLATNQPF-FWEA--QAPVSTVEQLDQRYLLV 226
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
P + L L++ ++ ++ +++F T +++ +L + +HS Q
Sbjct: 227 PEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKE 286
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R +F+ S IL+ +DV++RG+D P V +VI P + YIHR+GRT R G++G
Sbjct: 287 RFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQG 346
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGY 695
Q I L+ ++ + I++ K SV+ + +V + L+ V + +E + +
Sbjct: 347 QAITLVTQYDIHLVHAIEEQIKKKLEEFSVE---EAEVLQILTQVNVVRRECEIKLEAAH 403
Query: 696 YNSNKKVGRDKYKLVE 711
++ K++ + K ++E
Sbjct: 404 FDEKKEINKRKQLILE 419
Score = 41 (19.5 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 666 DPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYK 708
DPD + K + L+ ++ KN+ ++ + +K GR +K
Sbjct: 422 DPDLEAKRKAELAKIKQKNRR--FKEKVEETLKRQKAGRAGHK 462
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 133/387 (34%), Positives = 211/387 (54%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L ++D G+++MT VQ AT+P+ + KDV A+A TG+GKT+AF++P +E++++ +
Sbjct: 21 LLALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + ++I PTRELA Q + K+ P ++IGG + ++ + + I
Sbjct: 78 LKKMQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNI 137
Query: 411 LVATPGRLRDHIENTAG---FATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A A+ + + VLVLDEAD LLDMGF + I+A +PKQR+
Sbjct: 138 IVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ I+ E+G +++T ++ +++ D F
Sbjct: 198 TGLFSATQTQEVENLVRAGL-RNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVS 580
L LR+H + K LVF +T L L ++ + IH K + R ++
Sbjct: 257 QLVHFLRQHKQE----KHLVFFSTCACVEYYGKALESLIKQVKIMCIHG-KMKHKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFR+ G ILV +DV ARG+D P+V V+Q PS ++HR GRT R G G ++
Sbjct: 312 TEFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVF 371
Query: 641 LAPWEEFFLSTIKDLPILKAPVPSVDP 667
L P EE +++ + K P+ + P
Sbjct: 372 LLPMEESYINFLSINQ--KCPMQEMQP 396
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 135/377 (35%), Positives = 209/377 (55%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +SA K + + GY+ + +Q +P +L GKDV+A A+TGTGKT F LP +E+
Sbjct: 3 FSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ K Q R LV+ PTRELA Q T KY P + VV GG + +
Sbjct: 63 LAKGHKAKSGQTR----ALVLTPTRELAAQVGESVETYGKYLP-LRSAVVFGGVPINPQI 117
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ + +LVATPGRL D ++ A + +++LVLDEAD +LDMGF +DI+KI+A
Sbjct: 118 NKLR-HGVDVLVATPGRLLDLVQQNA---VKFNQLEILVLDEADRMLDMGFIRDIKKILA 173
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL- 519
+P +RQ L+FSAT +E+R++ + E T + T V+Q + P+D
Sbjct: 174 LLPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATT---VKQW--ICPVDKT 228
Query: 520 -HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
LL L+++ +N + +VLVF T +A L + +++ IH K Q RT+
Sbjct: 229 QKSALLIQLIKQ---ENWQ-QVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTK 284
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+F+ + +LV +D++ARG+D + V+ LP+ E Y+HR+GRTGR G GQ +
Sbjct: 285 ALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAV 344
Query: 639 LLLAPWEEFFLSTIKDL 655
L++ EE L +KD+
Sbjct: 345 SLVSS-EEIKL--LKDI 358
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 137/374 (36%), Positives = 210/374 (56%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F S+ L+ +K G T +QE LP+ L GKD++A +KTG+GKT+AFLLP+++
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
VI + + + R P +L+L+ PTRELA Q ++ L+ + V +GG +
Sbjct: 62 RVISTRALSK--RDPRVLILL--PTRELAHQVYSQLRLLVANTQYKAISV-LGGENFNDQ 116
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
K + P +VATPGR+ DH+E F L G+++L+LDEAD +LD+GF ++ I
Sbjct: 117 AKALAKEP-HFIVATPGRIADHLEQKNLF---LNGLELLILDEADRMLDLGFAPQLKAIN 172
Query: 460 -AAVPKQRQTLLFSATVPE-EVRQICHIALKRD-HEFINTVEEGSEETHEQVRQ-MHLVA 515
AA K+RQTL+FSAT+ E+ +I LK H I T +E H+ + Q ++L
Sbjct: 173 EAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAH--AE--HQDISQRIYLCD 228
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
LD LL LL +D +V++F T T +A L + Q+
Sbjct: 229 HLDHKEALLSRLL----SDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAA 284
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R ++ D+F + + ILVT+DV++RG+D +V+LVI +P E+Y+HR+GRTGR G +G
Sbjct: 285 RNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKG 344
Query: 636 QGILLLAP--WEEF 647
I L+ P W+ F
Sbjct: 345 DAISLVGPKDWDSF 358
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 137/374 (36%), Positives = 210/374 (56%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F S+ L+ +K G T +QE LP+ L GKD++A +KTG+GKT+AFLLP+++
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
VI + + + R P +L+L+ PTRELA Q ++ L+ + V +GG +
Sbjct: 62 RVISTRALSK--RDPRVLILL--PTRELAHQVYSQLRLLVANTQYKAISV-LGGENFNDQ 116
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
K + P +VATPGR+ DH+E F L G+++L+LDEAD +LD+GF ++ I
Sbjct: 117 AKALAKEP-HFIVATPGRIADHLEQKNLF---LNGLELLILDEADRMLDLGFAPQLKAIN 172
Query: 460 -AAVPKQRQTLLFSATVPE-EVRQICHIALKRD-HEFINTVEEGSEETHEQVRQ-MHLVA 515
AA K+RQTL+FSAT+ E+ +I LK H I T +E H+ + Q ++L
Sbjct: 173 EAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAH--AE--HQDISQRIYLCD 228
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
LD LL LL +D +V++F T T +A L + Q+
Sbjct: 229 HLDHKEALLSRLL----SDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAA 284
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R ++ D+F + + ILVT+DV++RG+D +V+LVI +P E+Y+HR+GRTGR G +G
Sbjct: 285 RNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKG 344
Query: 636 QGILLLAP--WEEF 647
I L+ P W+ F
Sbjct: 345 DAISLVGPKDWDSF 358
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 498 (180.4 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 135/393 (34%), Positives = 210/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 266 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 321
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + ++ R + +++ PTREL Q
Sbjct: 322 ILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQI 381
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+L R C IL ATPGRL D I + G
Sbjct: 382 YLEARKF-SFGTCVRAVVIYGGTQLG-HSIRQIVQGCNILCATPGRLMDIIGKEKIG--- 436
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L +K LVLDEAD +LDMGF +++K+I+ +P +QRQTL+FSAT PEE++++
Sbjct: 437 -LKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEF 495
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V L+ +L ++ D + +VF
Sbjct: 496 LKSNYLFVAVGQVGG--ACRDVQQTVLQVGQFSKREKLVEIL--RNIGDE---RTMVFVE 548
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 549 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIEN 608
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 609 VQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 641
Score = 50 (22.7 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 27/97 (27%), Positives = 34/97 (35%)
Query: 53 PTRVNSXXXXXXXXLGLRKLSTRPFRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWV 112
PTR G ++ P+R F RG R G GS N D E
Sbjct: 121 PTRNRGFSKRGGYRDGNNSEASGPYRRGGRGSF--RGCRGGFGLGSPNNDLDPDECMQ-- 176
Query: 113 SDLRTDSFHSNKR----FSKDDDVSDFRKGSGRENRG 145
RT ++R + + D S R GSG E G
Sbjct: 177 ---RTGGLFGSRRPVLSGTGNGDTSQSRSGSGSERGG 210
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 498 (180.4 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 135/393 (34%), Positives = 210/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 246 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 301
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + ++ R + +++ PTREL Q
Sbjct: 302 ILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQI 361
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+L R C IL ATPGRL D I + G
Sbjct: 362 YLEARKF-SFGTCVRAVVIYGGTQLG-HSIRQIVQGCNILCATPGRLMDIIGKEKIG--- 416
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L +K LVLDEAD +LDMGF +++K+I+ +P +QRQTL+FSAT PEE++++
Sbjct: 417 -LKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEF 475
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V L+ +L ++ D + +VF
Sbjct: 476 LKSNYLFVAVGQVGG--ACRDVQQTVLQVGQFSKREKLVEIL--RNIGDE---RTMVFVE 528
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 529 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIEN 588
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 589 VQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 621
Score = 47 (21.6 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 23/74 (31%), Positives = 28/74 (37%)
Query: 76 PFRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKR----FSKDDD 131
P+R F RG R G GS N D E RT ++R + + D
Sbjct: 124 PYRRGGRGSF--RGCRGGFGLGSPNNDLDPDECMQ-----RTGGLFGSRRPVLSGTGNGD 176
Query: 132 VSDFRKGSGRENRG 145
S R GSG E G
Sbjct: 177 TSQSRSGSGSERGG 190
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 146/453 (32%), Positives = 227/453 (50%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD +S L+ + + GY + T +Q+ +P +L+G+D++A A+TGTGKT F LP ++
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+I P + +R P+ L++ PTRELA Q KY +I VV GG + +
Sbjct: 63 LITRQPHAKGRR--PVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQM 119
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ +LVATPGRL D +E+ A +L V++LVLDEAD +LDMGF DI +++
Sbjct: 120 MKLRGG-VDVLVATPGRLLD-LEHQN--AVKLDQVEILVLDEADRMLDMGFIHDIRRVLT 175
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEET-HEQVRQ-MHLVAPLD 518
+P +RQ LLFSAT ++++ + L E +E T +QV Q +H V
Sbjct: 176 KLPAKRQNLLFSATFSDDIKALAEKLLHNPLE----IEVARRNTASDQVTQHVHFVDKKR 231
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
LL + +VLVF T +A+ L + + IH K Q RTR
Sbjct: 232 KR-----ELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+F+ +LV +D++ARG+D ++ V+ LP+ E Y+HR+GRTGR G+ +
Sbjct: 287 ALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEAL 346
Query: 639 LLLAPWEEFFLSTIKDL---PILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAW-LG 694
L+ E L I+ L I + +P +PD K E + + + Q G
Sbjct: 347 SLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRG 406
Query: 695 YYNSNKKVGRDKYKLVELANEYSRSMGLDNPPA 727
+ G K + A + SR +G D PA
Sbjct: 407 QQQPRRGEGGAKSASAKPAEKPSRRLG-DAKPA 438
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 150/456 (32%), Positives = 235/456 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L +++ G+ MT VQ AT+P+ +K KDV A+A TG+GKT+AF++P +E++++ +
Sbjct: 21 LSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIVEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + ++I PTRELA Q S K P + IGG + R + I
Sbjct: 78 FKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNI 137
Query: 411 LVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A A+ + ++VLVLDEAD LLDMGF I I+ +PKQR+
Sbjct: 138 IVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ I+ E+G +++T ++ ++V D F
Sbjct: 198 TGLFSATQTQEVENLVRAGL-RNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE--IHSRKPQSYRTRVS 580
L LR H + K LVF +T L L V+ IH K + R ++
Sbjct: 257 QLVHFLRNHKQE----KHLVFFSTCACVEYYGKALETLVKGVKIMCIHG-KMKYKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFRK + ILV +DV ARG+D P+V V+Q PS+ ++HR GRT R G G ++
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVF 371
Query: 641 LAPWEEFFLSTI---KDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYN 697
L P EE ++S + + P+ + + D K+ +A++ + E +A++ Y
Sbjct: 372 LLPMEESYISFLAINQKCPLQEMKLQKNTADLLPKL-KAMALGDRAVFEKGMKAFVSYVQ 430
Query: 698 SNKKVGRDK-YKLVELA-NEYSRSMGLDNPPAIPKL 731
+ K + ++L +L +R L P +P+L
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPEL 466
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 497 (180.0 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
Identities = 135/395 (34%), Positives = 213/395 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 267 ISFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 322
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIK---SPPVDRDQRRPPILVLVICPTRELAT 369
+L G+D++A A+TG+GKT AFLLP + ++ + ++ + P ++ + PTREL
Sbjct: 323 ILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEPECII--VAPTRELVN 380
Query: 370 QAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGF 428
Q EA + + V+ GGT+L R C IL ATPGRL D I + G
Sbjct: 381 QIYLEARKF-SFGTCVRAVVIYGGTQLG-HSIRQIVQGCNILCATPGRLMDIIGKEKIG- 437
Query: 429 ATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICH 484
L +K LVLDEAD +LDMGF +++K+I+ +P +QRQTL+FSAT PEE++++
Sbjct: 438 ---LKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAA 494
Query: 485 IALKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVF 543
LK ++ F+ + G V+Q L V L+ +L ++ D + +VF
Sbjct: 495 EFLKSNYLFVAVGQVGG--ACRDVQQTVLQVGQFSKREKLVEIL--RNIGDE---RTMVF 547
Query: 544 CTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDY 603
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D
Sbjct: 548 VETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDI 607
Query: 604 PDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 608 ENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 642
Score = 49 (22.3 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
Identities = 28/97 (28%), Positives = 34/97 (35%)
Query: 53 PTRVNSXXXXXXXXLGLRKLSTRPFRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWV 112
PTR G ++ P R S F RG R G GS N D E
Sbjct: 122 PTRNRGFSKRGGYRDGNNSEASGPSRRGGRSSF--RGCRGGFGLGSPNNDLDPDECMQ-- 177
Query: 113 SDLRTDSFHSNKR----FSKDDDVSDFRKGSGRENRG 145
RT ++R + + D S R GSG E G
Sbjct: 178 ---RTGGLFGSRRPALSGTGNGDTSQSRSGSGSERGG 211
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 150/456 (32%), Positives = 235/456 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L +++ G+ MT VQ AT+P+ +K KDV A+A TG+GKT+AF++P +E++++ +
Sbjct: 21 LGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + +VI PTRELA Q S K+ P + IGG + +R + + I
Sbjct: 78 LKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNI 137
Query: 411 LVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A A+ + + VLVLDEAD LLDMGF I I+ +PKQR+
Sbjct: 138 IVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ I+ E+G +++T ++ +++ D F
Sbjct: 198 TGLFSATQTQEVENLVRAGL-RNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVS 580
L LR + K LVF +T L L K+ + IH K + R ++
Sbjct: 257 QLVHFLRSRQQE----KHLVFFSTCACVEYYGKALEALLKKVKILCIHG-KMKYKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFRK + ILV +DV ARG+D P+V V+Q PS+ ++HR GRT R G G ++
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVF 371
Query: 641 LAPWEEF---FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYN 697
L P EE FL+ + P+ + + D K+ RA++ + E +A++ +
Sbjct: 372 LLPMEEAYINFLAINQKCPLQEMSLQRNTIDLLPKL-RAMALADRAVFEKGMKAFVSFVQ 430
Query: 698 SNKKVGRDK-YKLVELANE-YSRSMGLDNPPAIPKL 731
+ K ++L +L +R L P +P+L
Sbjct: 431 AYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPEL 466
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 142/425 (33%), Positives = 223/425 (52%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ +K+ G+ MT VQ A +P+ + KDV A+A TG+GKT+AF++P++E+++K +
Sbjct: 21 LQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + L+I PTRELA Q + L+ P ++IGG+ + ++++ I
Sbjct: 78 LKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANI 137
Query: 411 LVATPGRLRDHIENTAG---FATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
++ATPGRL D A AT + + VLVLDEAD LLDMGF + I+ +PKQR+
Sbjct: 138 IIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEGS-----EETHEQVRQMHLVAPLDLHFP 522
T LFSAT +E+ ++ L R+ I E+G ++T ++ + + + F
Sbjct: 198 TGLFSATQTQELEKLVRAGL-RNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHS--RKPQSYRTRVS 580
L LR+H + K LVF +T L L NV IH K + R ++
Sbjct: 257 TLVAFLRQHKHE----KQLVFFSTCACVEYFGKALEVLVKNV-SIHCIHGKMKHKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
+FR K ILV +DV ARG+D P+V V+Q PS ++HR GRT R G +G ++
Sbjct: 312 ADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVF 371
Query: 641 LAPWEEF---FLSTIKDLPILK-APVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYY 696
L P EE FLS + P+ + V V D K+ +A++ + E +A++ Y
Sbjct: 372 LLPMEESYVNFLSINQKCPLQSFSSVKDV-VDVLPKL-KAMALGDRAMFEKGMRAFVSYV 429
Query: 697 NSNKK 701
+ K
Sbjct: 430 QAYAK 434
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 526 (190.2 bits), Expect = 2.5e-50, P = 2.5e-50
Identities = 144/420 (34%), Positives = 226/420 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++S LK I G+++ T +Q+A +PV L GKD+ A A TGTGKT AF+LP +E
Sbjct: 203 FHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLER 262
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+I P R+ + +LVLV PTREL Q T A L ++ +I + +GG L ++
Sbjct: 263 LIYKP---RETQVTRVLVLV--PTRELGIQVHTVARQLAQF-TTISTCLAVGGLDLKSQE 316
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++A P +L+ATPGRL DH+ NT F L +++L+LDEAD +LD F + +++II
Sbjct: 317 AALRAGP-DVLIATPGRLIDHLHNTPSF--ELSQIEILILDEADRMLDEYFEEQMKEIIR 373
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FINTVEEGSEETHEQVRQMHLVAPLDL 519
QRQT+LFSAT+ EEV+ + ++LK+ F+N+ + + ++ ++ D
Sbjct: 374 MCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDR 433
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
++ LL D+ V++F T + LLG + L V E+H Q+ R
Sbjct: 434 E-AIVAALLTRTFQDH----VMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLES 488
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
F+ + ILV +DV+ARG+D V VI +P+ + Y+HR+GRT R GK G+ +
Sbjct: 489 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVS 548
Query: 640 LLAPWEEFFLSTI---KDLPILKAPVPSVD----PDTKKKVER---ALSHVEMKNKEAAY 689
L+ E L I P+ +P D +K+E+ A+ +E + KE A+
Sbjct: 549 LVGETERKMLKEIVKKAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEKEEKEMAH 608
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 148/456 (32%), Positives = 234/456 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L +++ G+ MT VQ AT+P+ ++ KDV A+A TG+GKT+AF++P +E++++ +
Sbjct: 21 LGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + ++I PTRELA Q S K+ P + IGG + +R + I
Sbjct: 78 LKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNI 137
Query: 411 LVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A A+ + + VLVLDEAD LLDMGF I I+ +PKQR+
Sbjct: 138 IVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ ++ E+G +++T ++ ++V D F
Sbjct: 198 TGLFSATQTQEVENLVRAGL-RNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE--IHSRKPQSYRTRVS 580
L LR H + K LVF +T L L V+ IH K + R ++
Sbjct: 257 QLVHFLRNHKQE----KHLVFFSTCACVEYYGKALEVLVKGVKIMCIHG-KMKYKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFRK + ILV +DV ARG+D P+V V+Q PS+ ++HR GRT R G G ++
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVF 371
Query: 641 LAPWEEF---FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYN 697
L P EE FL+ + P+ + D K+ ++++ + E +A++ Y
Sbjct: 372 LLPMEESYINFLAINQKCPLQEMKPQRNTADLLPKL-KSMALADRAVFEKGMKAFVSYVQ 430
Query: 698 SNKKVGRDK-YKLVELA-NEYSRSMGLDNPPAIPKL 731
+ K + ++L +L +R L P +P+L
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPEL 466
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 150/464 (32%), Positives = 238/464 (51%)
Query: 283 QCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVI 342
Q + L L +++ G+ MT VQ AT+P+ ++ KDV A+A TG+GKT+AF++P +E+++
Sbjct: 13 QVPLHPLVLGALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILL 72
Query: 343 KSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKR 402
+ + ++ + +VI PTRELA Q S K+ P + IGG + +R
Sbjct: 73 RR---EEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVER 129
Query: 403 MQANPCQILVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ + I+VATPGRL D A A+ + + VLVLDEAD LLDMGF I I+
Sbjct: 130 FKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTIL 189
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLV 514
+PKQR+T LFSAT +EV + L R+ I+ E+G +++T ++ +++
Sbjct: 190 EFLPKQRRTGLFSATQTQEVENLVRAGL-RNPVRISVKEKGVAASSTQKTPSRLENHYMI 248
Query: 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKP 572
D F L LR + K LVF +T L L ++ + IH K
Sbjct: 249 CKADEKFNQLVHFLRSRQQE----KHLVFFSTCACVEYYGKALEALVQRVKILCIHG-KM 303
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
+ R ++ EFRK + ILV +DV ARG+D P+V V+Q PS+ ++HR GRT R G
Sbjct: 304 KYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIG 363
Query: 633 KEGQGILLLAPWEEF---FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAY 689
G ++ L P EE FL+ + P+ + + D K+ RA++ + E
Sbjct: 364 HGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTVDLLPKL-RAMALADRAVFEKGM 422
Query: 690 QAWLGYYNSNKKVGRDK-YKLVELANE-YSRSMGLDNPPAIPKL 731
+A++ + + K ++L +L +R L P +P+L
Sbjct: 423 KAFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPEL 466
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 150/456 (32%), Positives = 234/456 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L +++ G+ MT VQ AT+P+ +K KDV A+A TG+GKT+AF++P E++++ +
Sbjct: 21 LSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + ++I PTRELA Q S K P + IGG + R + I
Sbjct: 78 FKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNI 137
Query: 411 LVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A A+ + ++VLVLDEAD LLDMGF I I+ +PKQR+
Sbjct: 138 IVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ I+ E+G +++T ++ ++V D F
Sbjct: 198 TGLFSATQTQEVENLVRAGL-RNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE--IHSRKPQSYRTRVS 580
L LR H + K LVF +T L L V+ IH K + R ++
Sbjct: 257 QLVHFLRNHKQE----KHLVFFSTCACVEYYGKALETLVKGVKIMCIHG-KMKYKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFRK + ILV +DV ARG+D P+V V+Q PS+ ++HR GRT R G G ++
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVF 371
Query: 641 LAPWEEFFLSTI---KDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYN 697
L P EE ++S + + P+ + + D K+ +A++ + E +A++ Y
Sbjct: 372 LLPMEESYISFLAINQKCPLQEMKLQKNTADLLPKL-KAMALGDRAVFEKGMKAFVSYVQ 430
Query: 698 SNKKVGRDK-YKLVELA-NEYSRSMGLDNPPAIPKL 731
+ K + ++L +L +R L P +P+L
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPEL 466
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 503 (182.1 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 135/383 (35%), Positives = 205/383 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++S LK I G+++ T +Q+A +PV L GKD+ A A TGTGKT AF LP +E
Sbjct: 186 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 245
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+I P R +LVLV PTREL Q + L ++ SI + +GG + ++
Sbjct: 246 LIYKP---RQAAVTRVLVLV--PTRELGIQVHSVTKQLAQFC-SITTCLAVGGLDVKSQE 299
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++A P IL+ATPGRL DH+ N F L ++VL+LDEAD +LD F + +++II
Sbjct: 300 AALRAAP-DILIATPGRLIDHLHNCPSF--HLSSIEVLILDEADRMLDEYFEEQMKEIIR 356
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FINTVEEGSEETHEQVRQMHLVAPLDL 519
RQT+LFSAT+ +EV+ + ++LK F+N+ + + ++ ++ D
Sbjct: 357 MCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDR 416
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
++ LL D+ V++F T + LLG L L V E+H Q+ R
Sbjct: 417 E-AIVAALLMRTFTDH----VMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEA 471
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
F+ + ILV +DV+ARG+D V VI +P+ + Y+HR+GRT R G+ G+ +
Sbjct: 472 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVS 531
Query: 640 LLAPWEEFFLSTIKDLPILKAPV 662
L+ E L I + KAPV
Sbjct: 532 LVGEEERKMLKEI--VKAAKAPV 552
Score = 41 (19.5 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 87 RRGSRAGEIRGSKNLIDDEAELSDWVSDLRTD-SFHSNKRFSKDD 130
+ G +++G +N +DEA D D TD S + +K D
Sbjct: 112 KEGQADSDLKGQENPGEDEAGSKD--EDSETDYSSEDEEILTKAD 154
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 499 (180.7 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 139/368 (37%), Positives = 191/368 (51%)
Query: 272 HDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTV 331
HD + FD+ L+ +KD G+ K T +Q P+ L G+D++ A TG+GKT+
Sbjct: 120 HDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTL 179
Query: 332 AFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI 391
++ LPSI + P + PI VLV+ PTRELA Q TE S K I V
Sbjct: 180 SYCLPSIVHINAQPQLQYGDG--PI-VLVLAPTRELAVQIQTECSKFGK-SSRIRNTCVY 235
Query: 392 GGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGF 451
GG Q R A +I +ATPGRL D +E AG T L V LVLDEAD +LDMGF
Sbjct: 236 GGAPKG-PQIRDLARGVEICIATPGRLIDMLE--AG-KTNLKRVTYLVLDEADRMLDMGF 291
Query: 452 RKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEF-INTVEEGSEETHEQVRQ 510
I KI+ + RQTL++SAT P+EV+Q+ L + I ++E + T Q+
Sbjct: 292 EPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQL-- 349
Query: 511 MHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSR 570
+ ++ L+ L E + + K+LVF +T + L IH
Sbjct: 350 VEVIDEFSKRDRLVKHL--ESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGD 407
Query: 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR 630
K Q+ R V DEFRK K I+V +DV+ARG+D +T VI +P + E Y+HR+GRTGR
Sbjct: 408 KEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGR 467
Query: 631 KGKEGQGI 638
G G I
Sbjct: 468 GGASGTAI 475
Score = 38 (18.4 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 624 RLGRTGRKGKEGQG 637
R GR GR G+ G+G
Sbjct: 525 RGGRGGRGGRGGRG 538
Score = 38 (18.4 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 624 RLGRTGRKGKEGQG 637
R GR GR G+ G+G
Sbjct: 522 RGGRGGRGGRGGRG 535
Score = 37 (18.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 626 GRTGRKGKEGQG 637
GR GR G+ G+G
Sbjct: 521 GRGGRGGRGGRG 532
Score = 37 (18.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 665 VDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNS-NKKVGRDKYKLVELANE 715
++ D +E + + + A + ++ N K+G D K++ AN+
Sbjct: 447 INYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQ 498
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 492 (178.3 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 141/445 (31%), Positives = 224/445 (50%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI-E 339
F++ ++ K + +GY K+T +Q+ ++P+++ G+D++A A+TG+GKT AFLLP +
Sbjct: 288 FEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAH 347
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+++K Q +++ PTREL Q +A Y + V+ GGT++
Sbjct: 348 LMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKF-SYGTCVRPVVIYGGTQMFHS 406
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
K++ C IL ATPGRL D I T+L + LVLDEAD +LDMGFR+DIE ++
Sbjct: 407 LKQISEG-CNILCATPGRLLDVIRKEKIGLTKL---RYLVLDEADRMLDMGFREDIENLL 462
Query: 460 --AAVP--KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
+ +P ++RQTL+FSAT P ++ + LK D+ F+ + G V QM V
Sbjct: 463 KSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGG--ACSDVEQM--VI 518
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
+D F L+ E + + + +VF T +A L + K+ IH + Q
Sbjct: 519 EVD-EFGKKDKLM-EILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKE 576
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R +FR + ++V + V+ARG+D +V+ VI +P D ++Y+HR+GRTGR G G
Sbjct: 577 RETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTG 636
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMK-NKEAAYQAWLG 694
+ I FF D + + V D ++V L V + +AY
Sbjct: 637 RAI-------SFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAFSAHGSSAYNP--- 686
Query: 695 YYNSNKKVGRDKYKLVELANEYSRS 719
SNK D K + +YS S
Sbjct: 687 --RSNKFASTDDRKRGDSRGDYSTS 709
Score = 49 (22.3 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 206 FSNDDENDVGEERRRG 221
F+NDD + + RRRG
Sbjct: 117 FTNDDNRTIDDNRRRG 132
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 521 (188.5 bits), Expect = 7.0e-50, P = 7.0e-50
Identities = 142/428 (33%), Positives = 224/428 (52%)
Query: 258 ENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGK 317
+ GG A S + F ++S LK I G+++ T +Q+A +PV L GK
Sbjct: 159 KKGGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGK 218
Query: 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL-VLVICPTRELATQAATEAS 376
D+ A A TGTGKT AF+LP +E +I P R+ PI VLV+ PTREL Q +
Sbjct: 219 DICACAATGTGKTAAFILPVLERLIYKP------RQAPITRVLVLVPTRELGIQVHSVTK 272
Query: 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436
L ++ S+ + +GG + ++ +++ P IL+ATPGRL DH+ N F L V+
Sbjct: 273 QLAQFS-SVTTCLAVGGLDVKTQEAALRSGP-DILIATPGRLIDHLHNCPSF--HLSSVE 328
Query: 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FIN 495
VL+LDEAD +LD F + +++II + RQT+LFSAT+ EEV+ + ++LK F+N
Sbjct: 329 VLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVN 388
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
+ + + ++ ++ D + +L R P++ V++F T +
Sbjct: 389 SNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTF----PDH-VMLFTQTKKQAHRMHI 443
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
LLG + L V E+H Q+ R F+ + ILV +DV+ARG+D V VI +P
Sbjct: 444 LLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMP 503
Query: 616 SDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPS-VDP-DTKKKV 673
+ + Y+HR+GRT R G+ G+ + L+ E L I + K PV + + P D K
Sbjct: 504 NTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI--VKAAKTPVKARILPQDVILKF 561
Query: 674 ERALSHVE 681
+ ++E
Sbjct: 562 REKIENLE 569
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 132/402 (32%), Positives = 214/402 (53%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
S + F + I A + + GY T VQ AT+P +L G+DVLA A TG+GKT AF LP
Sbjct: 7 SVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALP 66
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE-ASTLLKYHPSIGVQVVIGGTR 395
++ + ++ D+ LVLV PTRELA Q A S ++ + + GG
Sbjct: 67 LLQRLSEAKSADKSAGVVRCLVLV--PTRELAQQVADSFLSYASHFNGQLKIVAAFGGVS 124
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
+ L+ + ++A +LVATPGRL D + A A +L V VLDEAD +L +GF +++
Sbjct: 125 VNLQMQSLRAG-ADVLVATPGRLLDLL---ASNALKLTQVSAFVLDEADRMLSLGFTEEL 180
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E+++AA+P+Q+QTLLFSAT PEEVR + L + E+ ++ E T + Q +
Sbjct: 181 EQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEY--HLQSEQEST---IEQRVITV 235
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
+ LL L+++H + L+F + +A L + ++ H K Q
Sbjct: 236 NREQKTALLAHLIKQHQWS----QALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGA 291
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
RTRV D F+ + +L+ +D++ARG+D + +VI LP Y+HR+GR+GR G+ G
Sbjct: 292 RTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAG 351
Query: 636 QGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVE 674
+ L++ E I+ + +++ +P + + + +E
Sbjct: 352 LAVTLISHEEYHHFGVIEKKNKIKLVREQIPGFEANAEIPLE 393
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 132/402 (32%), Positives = 214/402 (53%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
S + F + I A + + GY T VQ AT+P +L G+DVLA A TG+GKT AF LP
Sbjct: 7 SVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALP 66
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE-ASTLLKYHPSIGVQVVIGGTR 395
++ + ++ D+ LVLV PTRELA Q A S ++ + + GG
Sbjct: 67 LLQRLSEAKSADKSAGVVRCLVLV--PTRELAQQVADSFLSYASHFNGQLKIVAAFGGVS 124
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
+ L+ + ++A +LVATPGRL D + A A +L V VLDEAD +L +GF +++
Sbjct: 125 VNLQMQSLRAG-ADVLVATPGRLLDLL---ASNALKLTQVSAFVLDEADRMLSLGFTEEL 180
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E+++AA+P+Q+QTLLFSAT PEEVR + L + E+ ++ E T + Q +
Sbjct: 181 EQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEY--HLQSEQEST---IEQRVITV 235
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
+ LL L+++H + L+F + +A L + ++ H K Q
Sbjct: 236 NREQKTALLAHLIKQHQWS----QALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGA 291
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
RTRV D F+ + +L+ +D++ARG+D + +VI LP Y+HR+GR+GR G+ G
Sbjct: 292 RTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAG 351
Query: 636 QGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVE 674
+ L++ E I+ + +++ +P + + + +E
Sbjct: 352 LAVTLISHEEYHHFGVIEKKNKIKLVREQIPGFEANAEIPLE 393
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 148/456 (32%), Positives = 231/456 (50%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L + G+ MT VQ AT+P+ +K KDV A+A TG+GKT+AF++P +E++++ +
Sbjct: 21 LGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + ++I PTRELA Q + K P + IGG A + R + I
Sbjct: 78 LKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGGNI 137
Query: 411 LVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A+ + ++VLVLDEAD LLDMGF I I+ +PKQR+
Sbjct: 138 IVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ I+ E+G +++T ++ ++V D F
Sbjct: 198 TGLFSATQTQEVESLVRAGL-RNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE--IHSRKPQSYRTRVS 580
L LR H + K L+F +T L L +V+ IH K + R ++
Sbjct: 257 QLVHFLRNHKQE----KHLIFFSTCACVEYYGKALEALVKSVKIMCIHG-KMKHKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFRK + ILV +DV ARG+D P+V V+Q PS ++HR GRT R G G ++
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVF 371
Query: 641 LAPWEEF---FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYN 697
L P EE FL + P+ + + D K+ ++++ + E +A++ Y
Sbjct: 372 LLPMEESYVTFLEINQKCPLQEMKLQKNTGDLLPKL-KSMALADRAVFEKGMKAFVSYVQ 430
Query: 698 SNKKVGRDK-YKLVELA-NEYSRSMGLDNPPAIPKL 731
+ K + ++L +L +R L P +P+L
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPEL 466
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 504 (182.5 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 134/450 (29%), Positives = 226/450 (50%)
Query: 265 AISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAK 324
A P K D+ + F S+S L+G+ G+ K T +Q T+P+ L GKDV+ A
Sbjct: 242 AADEP-KSDTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAV 300
Query: 325 TGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS 384
TG+GKT AF++P +E ++ P ++ P V+++ PTRELA Q A T L H
Sbjct: 301 TGSGKTAAFVVPILERLLYRP-----KKVPTSRVVILAPTRELAIQCHAVA-TKLASHTD 354
Query: 385 IGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444
I + +GG L +++ ++ P +++ATPGR DH+ N+A FA V++LVLDEAD
Sbjct: 355 IKFCLAVGGLSLKVQESELRLRP-DVIIATPGRFIDHMRNSASFAVDT--VEILVLDEAD 411
Query: 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEET 504
+L+ GF ++ +I+ +PK RQT+LFSAT+ V + + L + + + + ++T
Sbjct: 412 RMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKP---VRLMVDSQKKT 468
Query: 505 HEQVRQMHL-VAPLDLHFPLLYVLLREHVADNP-EYKVLVFCTTAMVTRMVADLLGELKL 562
+ Q + + P + Y++ ++ N +V++F + + G L L
Sbjct: 469 VVTLTQEFVRLRPGREEKRMGYLV---YLCKNLYTERVIIFFRQKKIAHHARIIFGLLGL 525
Query: 563 NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYI 622
+ E+H Q R + + FR K L+ +D+++RG+D V VI P E Y+
Sbjct: 526 SCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYV 585
Query: 623 HRLGRTGRKGKEGQGILLLA-PWEEFFLSTIK-----DLPILKAPVPSVDPDT-KKKVER 675
HR+GRT R G+ G I L A P + + +K I + + D D+ + K++
Sbjct: 586 HRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAKIDE 645
Query: 676 ALSHVEMKNKEAAYQAWLGYYNSNKKVGRD 705
VE +E + L + + G +
Sbjct: 646 LEDEVEAVMREEKEEKVLAQADMEMRKGEN 675
Score = 40 (19.1 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 122 SNKRFSKDDDVSDFRKG 138
S+K+ S DDD D G
Sbjct: 54 SSKKASNDDDAEDEEDG 70
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 148/455 (32%), Positives = 229/455 (50%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L + G+ MT VQ AT+P+ +K KDV A+A TG+GKT+AF++P +E++++ +
Sbjct: 21 LGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR---EEK 77
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
++ + ++I PTRELA Q + K P + IGG A + R + I
Sbjct: 78 LKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGGNI 137
Query: 411 LVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ 467
+VATPGRL D A+ + ++VLVLDEAD LLDMGF I I+ +PKQR+
Sbjct: 138 IVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRR 197
Query: 468 TLLFSATVPEEVRQICHIALKRDHEFINTVEEG-----SEETHEQVRQMHLVAPLDLHFP 522
T LFSAT +EV + L R+ I+ E+G +++T ++ ++V D F
Sbjct: 198 TGLFSATQTQEVESLVRAGL-RNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFN 256
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE--IHSRKPQSYRTRVS 580
L LR H + K L+F +T L L +V+ IH K + R ++
Sbjct: 257 QLVHFLRNHKQE----KHLIFFSTCACVEYYGKALEALVKSVKIMCIHG-KMKHKRNKIF 311
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
EFRK + ILV +DV ARG+D P+V V+Q PS ++HR GRT R G G ++
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVF 371
Query: 641 LAPWEEF---FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYN 697
L P EE FL + P+ + + D K+ ++++ + E +A++ Y
Sbjct: 372 LLPMEESYVTFLEINQKCPLQEMKLQKNTGDLLPKL-KSMALADRAVFEKGMKAFVSYVQ 430
Query: 698 SNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAIPKL 731
+ K + + L A +R L P +P+L
Sbjct: 431 AYAK--HECNLIFRLKAKILARGFALLRMPKMPEL 463
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 148/453 (32%), Positives = 232/453 (51%)
Query: 294 IKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR 353
+++ G+ MT VQ AT+P+ +K KDV A+A TG+GKT+AF++P +E++++ + ++
Sbjct: 24 LQELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR---EEKLKK 80
Query: 354 PPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVA 413
+ ++I PTRELA Q S K P + IGG + R + + I+VA
Sbjct: 81 SQVGAIIITPTRELAVQIDEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKEHGGNIIVA 140
Query: 414 TPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
TPGRL D A A+ + + VLVLDEAD LLDMGF I I+ +PKQR+T L
Sbjct: 141 TPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGL 200
Query: 471 FSATVPEEVRQICHIALKRDHEFINTVEEGS-----EETHEQVRQMHLVAPLDLHFPLLY 525
FSAT +EV + L R+ I+ E+G+ ++T ++ ++V D F L
Sbjct: 201 FSATQTQEVENLVRAGL-RNPVRISVKEKGAAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 526 VLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE--IHSRKPQSYRTRVSDEF 583
LR H + K LVF +T L L +V+ IH K + R ++ EF
Sbjct: 260 HFLRNHKQE----KHLVFFSTCACVEYYGKALEALVRSVKIMCIHG-KMKYKRNKIFMEF 314
Query: 584 RKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAP 643
R+ + ILV +DV ARG+D P+V V+Q PS ++HR GRT R G G ++ L P
Sbjct: 315 RQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLP 374
Query: 644 WEEF---FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNK 700
EE FL+ + P+ + D K+ ++++ + E +A++ Y +
Sbjct: 375 MEESYVNFLAINQKCPLQAMKLQKNTVDLLPKL-KSMALADRAVFEKGMKAFVSYVQAYA 433
Query: 701 KVGRDK-YKLVELA-NEYSRSMGLDNPPAIPKL 731
K + ++L +L +R L P +P+L
Sbjct: 434 KHECNLIFRLKDLDFASIARGFALLRMPKMPEL 466
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 150/420 (35%), Positives = 215/420 (51%)
Query: 275 FMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFL 334
FMS F+ +SA L+ I++ GY + T VQ +PV+L+ +DV+ A+TGTGKT F
Sbjct: 9 FMS---FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFT 65
Query: 335 LPSIE-VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
LP ++ + + PP+ R + P I L++ PTRELA Q KY P + VV GG
Sbjct: 66 LPLLQRLFVSRPPLQRSAK-PVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGG 123
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ + ++ ILVATPGRL D + G L V+ VLDEAD +LDMGF
Sbjct: 124 VSIKPQINHLRRG-VDILVATPGRLLDLVNQ--G-VLNLSRVEFFVLDEADRMLDMGFLP 179
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513
DI +I+ +P+ RQ LLFSAT +E++++ L H +E T R H+
Sbjct: 180 DIRRILKLLPESRQNLLFSATFSKEIKELTDKLL---HSPA-LIEVARRNT-AAARITHV 234
Query: 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
V P+D LL + +VLVF T ++ L L+ IH K Q
Sbjct: 235 VHPVDRQRKR--ELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQ 292
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
+ R R +F++ K +LV +DV+ARG+D + VI LP + Y+HR+GRTGR
Sbjct: 293 AARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASN 352
Query: 634 EGQGILLLAPWEEFFLSTIKDLPILKAP---VPSVDPD--TK----KKVERALSHVEMKN 684
+G I L++ E L I+ L K P +P +P TK + V RA S+ KN
Sbjct: 353 DGVAISLVSGDEVRLLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKN 412
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 150/420 (35%), Positives = 215/420 (51%)
Query: 275 FMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFL 334
FMS F+ +SA L+ I++ GY + T VQ +PV+L+ +DV+ A+TGTGKT F
Sbjct: 9 FMS---FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFT 65
Query: 335 LPSIE-VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
LP ++ + + PP+ R + P I L++ PTRELA Q KY P + VV GG
Sbjct: 66 LPLLQRLFVSRPPLQRSAK-PVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGG 123
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ + ++ ILVATPGRL D + G L V+ VLDEAD +LDMGF
Sbjct: 124 VSIKPQINHLRRG-VDILVATPGRLLDLVNQ--G-VLNLSRVEFFVLDEADRMLDMGFLP 179
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513
DI +I+ +P+ RQ LLFSAT +E++++ L H +E T R H+
Sbjct: 180 DIRRILKLLPESRQNLLFSATFSKEIKELTDKLL---HSPA-LIEVARRNT-AAARITHV 234
Query: 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
V P+D LL + +VLVF T ++ L L+ IH K Q
Sbjct: 235 VHPVDRQRKR--ELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQ 292
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
+ R R +F++ K +LV +DV+ARG+D + VI LP + Y+HR+GRTGR
Sbjct: 293 AARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASN 352
Query: 634 EGQGILLLAPWEEFFLSTIKDLPILKAP---VPSVDPD--TK----KKVERALSHVEMKN 684
+G I L++ E L I+ L K P +P +P TK + V RA S+ KN
Sbjct: 353 DGVAISLVSGDEVRLLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKN 412
>SGD|S000002602 [details] [associations]
symbol:MSS116 "DEAD-box protein involved splicing of
mitochondrial introns" species:4932 "Saccharomyces cerevisiae"
[GO:0000373 "Group II intron splicing" evidence=IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA;IMP] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0000372 "Group I intron
splicing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0034337 "RNA folding" evidence=IMP] [GO:0033592
"RNA strand annealing activity" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002602
GO:GO:0005524 GO:GO:0006417 GO:GO:0005759 GO:GO:0006397
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:Z48784 GO:GO:0000373 GO:GO:0000372
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00700000105515 GO:GO:0033592 OrthoDB:EOG437VPN
PIR:S02116 RefSeq:NP_010480.1 PDB:3I5X PDB:3I5Y PDB:3I61 PDB:3I62
PDB:3SQW PDB:3SQX PDB:4DB2 PDB:4DB4 PDBsum:3I5X PDBsum:3I5Y
PDBsum:3I61 PDBsum:3I62 PDBsum:3SQW PDBsum:3SQX PDBsum:4DB2
PDBsum:4DB4 ProteinModelPortal:P15424 SMR:P15424 DIP:DIP-5368N
IntAct:P15424 MINT:MINT-525340 STRING:P15424 PaxDb:P15424
PeptideAtlas:P15424 EnsemblFungi:YDR194C GeneID:851775
KEGG:sce:YDR194C CYGD:YDR194c HOGENOM:HOG000113654 OMA:PEAHENI
EvolutionaryTrace:P15424 NextBio:969573 Genevestigator:P15424
GermOnline:YDR194C GO:GO:0034337 Uniprot:P15424
Length = 664
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 161/517 (31%), Positives = 267/517 (51%)
Query: 252 LIGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLP 311
LI + KE+ V + DS + E D+ I K I + +T VQ+ T+
Sbjct: 90 LIHVPKEDNSKEVTL------DSLLEEGVLDK-EIH----KAITRMEFPGLTPVQQKTIK 138
Query: 312 VLLKGKD--VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT 369
+L +D V+A+AKTGTGKT AFL+P + +I + D + +++ PTR+LA
Sbjct: 139 PILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK-FDSQYM---VKAVIVAPTRDLAL 194
Query: 370 QAATEASTL--LKYH-PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTA 426
Q E + + Y ++GGT +M I++ATPGRL D +E +
Sbjct: 195 QIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS 254
Query: 427 GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQR-------QTLLFSATVPEEV 479
R + KVL DEAD LL++GFR D+E I + ++ +TLLFSAT+ ++V
Sbjct: 255 NKFFRFVDYKVL--DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKV 312
Query: 480 RQICH-IALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH--FPLLYVLLREHVADNP 536
+++ + I K++ F++TV++ E HE++ Q +++ + F + + ++ +
Sbjct: 313 QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDS 372
Query: 537 EYKVLVFCTTAMVTRMVADLL-GELK--LNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593
YK ++F T T + +L E K L + E H + Q+ RT + F+K + ILV
Sbjct: 373 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 432
Query: 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653
+DV ARG+D+P+V V+Q+G+PS+ YIHR+GRT R GKEG +L + E F+ ++
Sbjct: 433 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 492
Query: 654 DLP-ILKAPVPSVDP--DTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGR--DKYK 708
D I+ A +P + K +V A++ E ++ + + Y S K R ++
Sbjct: 493 DAKNIVIAKQEKYEPSEEIKSEVLEAVTE-EPEDISDIVISLISSYRSCIKEYRFSERRI 551
Query: 709 LVELANEYSRSMGLDNPPA-IP--KLVLGKMGLRNIP 742
L E+A+ Y + L++P IP + L K+GL P
Sbjct: 552 LPEIASTYG--VLLNDPQLKIPVSRRFLDKLGLSRSP 586
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 504 (182.5 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 127/392 (32%), Positives = 207/392 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F++ +S LK ++ G+ + T +Q +P+ L GKD+LA A TG+GKT AFLLP +E
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++ RD I VL++ PTRELA Q + L ++ +I +++GG ++
Sbjct: 252 LLF-----RDSEYRAIRVLILLPTRELALQCQSVMENLAQFS-NITSCLIVGGLSNKAQE 305
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++ +P +++ATPGRL DH+ N G L +++L+LDEAD LLDMGF+ +I KI+
Sbjct: 306 VELRKSP-DVVIATPGRLIDHLLNAHGIG--LDDLEILILDEADRLLDMGFKDEINKIVE 362
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKR----DHEFINTVEEGSEETHEQVRQMHLVAP 516
+ P RQT+LFSAT+ +EV+ + ++L++ + + V E+ +++ HL
Sbjct: 363 SCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLS-- 420
Query: 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYR 576
D P + + L V + + ++FC + + + G L E+H Q R
Sbjct: 421 -DR--PAILLSLCTRVFN--QGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQR 475
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636
+FR + L+ SDV++RG+D V VI +P++ YIHR+GRT R G +G+
Sbjct: 476 FDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGK 535
Query: 637 GILLLAPWEEFFLSTIKDLPILKAPVPSVDPD 668
+ + L I KA SV D
Sbjct: 536 SCSFITDNDRKLLKDIVTKARNKAKSRSVSQD 567
Score = 37 (18.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 206 FSNDDENDVGEE 217
F +DDEND E+
Sbjct: 37 FVDDDENDDDED 48
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 133/437 (30%), Positives = 234/437 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F+ +S ++ K G + T VQE +P +L G+D + AKTG+GKT AF+LP ++
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P + LV+ PTRELA Q A + L K P +G++ +++GG +
Sbjct: 64 LSEDPY--------GVFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCIIVGGMDMVT 112
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P ++VATPGRL DHI ++ L ++ L++DEAD LL+ G F KD+
Sbjct: 113 QGLELSKKP-HVVVATPGRLADHIRSSD--TINLNRIQFLIMDEADRLLEQGCTDFTKDL 169
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSE-ETHEQVRQMHLV 514
E I++AVP +RQTLLFSAT+ + ++Q+ IA+ R + E S+ +T E++ Q ++
Sbjct: 170 EVILSAVPAKRQTLLFSATLTDTLQQLQSIAMNRPFFW----EHKSDVQTVEELDQRFIL 225
Query: 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQS 574
P + L L++ ++ ++ +++F T +++ +L E +HS Q
Sbjct: 226 TPEKVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQR 285
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R +F+ + IL+ +DV+ARG+D P V +VI P + YIHR+GRT R G+
Sbjct: 286 QRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRN 345
Query: 635 GQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLG 694
G I L+ ++ ++ I++ K P +K+V + L+ V + ++ +
Sbjct: 346 GVSITLVTQYDIHLINAIEEQNQTKL---KEFPIEEKEVLKILTQVNVTRRQCEIKLEST 402
Query: 695 YYNSNKKVGRDKYKLVE 711
++ KK+ + K +++
Sbjct: 403 DFDEKKKINKRKQMILD 419
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 503 (182.1 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 133/384 (34%), Positives = 207/384 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++S LK I G+++ T +Q+A +PV L GKD+ A A TGTGKT AF LP +E
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 341 VIKSPPVDRDQRRPPIL-VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+I P R+ P+ VLV+ PTREL Q + L ++ +I + +GG + +
Sbjct: 280 LIYKP------RQAPVTRVLVLVPTRELGIQVHSVTRQLAQFC-NITTCLAVGGLDVKSQ 332
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++A P IL+ATPGRL DH+ N F L ++VL+LDEAD +LD F + +++II
Sbjct: 333 EAALRAAP-DILIATPGRLIDHLHNCPSF--HLSSIEVLILDEADRMLDEYFEEQMKEII 389
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FINTVEEGSEETHEQVRQMHLVAPLD 518
RQT+LFSAT+ +EV+ + ++LK F+N+ + + ++ ++ D
Sbjct: 390 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 449
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
++ LL D+ V++F T + LLG + L V E+H Q+ R
Sbjct: 450 RE-AIVAALLTRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLE 504
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
F+ + ILV +DV+ARG+D V VI +P+ + Y+HR+GRT R G+ G+ +
Sbjct: 505 ALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSV 564
Query: 639 LLLAPWEEFFLSTIKDLPILKAPV 662
L+ E L I + KAPV
Sbjct: 565 SLVGEDERKMLKEI--VKAAKAPV 586
Score = 38 (18.4 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 198 GNVGRKTRFSNDDENDVGEERRRG 221
G +G + E+D G+E G
Sbjct: 40 GTIGEDDEVPVEPESDSGDEEEEG 63
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 132/436 (30%), Positives = 236/436 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + +S+ ++ + G ++ T VQ +P +L+G+D L AKTG+GKT AF+LP ++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P I LV+ PTRELA Q A + L K P +G++ +++GG +
Sbjct: 64 LSEDPY--------GIFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCIIVGGMDMVA 112
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P +++ATPGRL DH+ ++ F+ + ++ LV+DEAD LL+ G F D+
Sbjct: 113 QALELSRKP-HVVIATPGRLADHLRSSNTFSIKK--IRFLVMDEADRLLEQGCTDFTVDL 169
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E I+AAVP +RQTLLFSAT+ + +R++ +A + F + T EQ+ Q +L+
Sbjct: 170 EAILAAVPARRQTLLFSATLTDTLRELQSLATNQPF-FWEA--QAPVRTVEQLDQRYLLV 226
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
P + L L++ ++ ++ +++F T +++ +L + +HS Q
Sbjct: 227 PEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKE 286
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R +F+ S IL+ +DV++RG+D P V +VI P + YIHR+GRT R G++G
Sbjct: 287 RFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQG 346
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGY 695
Q I L+ ++ + I++ K SV+ + +V + L+ V + +E +
Sbjct: 347 QAITLVTQYDIHLVHAIEEQIKKKLEEFSVE---EAEVLQILTQVNVVRRECEIKLEAAN 403
Query: 696 YNSNKKVGRDKYKLVE 711
++ K++ + K ++E
Sbjct: 404 FDEKKEINKRKQMILE 419
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 121/365 (33%), Positives = 209/365 (57%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
+ + F +S LKGI + + K T +Q A++P+ L GKD++A A+TG+GKT A+++P
Sbjct: 128 THTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIP 187
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS-IGVQVVIGGTR 395
IE ++ P V+++ PTRELA Q E L +H + + + + +GG
Sbjct: 188 IIERLLYKPSTSTK-------VIILTPTRELALQVY-EFGKKLSHHVNNLNIGLAVGGLN 239
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
L ++++++ P I++ATPGRL DHI N+ F+ + ++VLV+DEAD +L+ GF+ ++
Sbjct: 240 LRQQEEQLKTRP-DIVIATPGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDEL 296
Query: 456 EKIIAAVPK-QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514
+I++ +PK +RQTLLFSAT+ ++ + ++L++ + ++ + ++Q +
Sbjct: 297 TEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIM--IDPPKSVASKLLQQFVRI 354
Query: 515 APLDLHFP-LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
D P LLY LL+ V+ +V+VF + +LG L L V E+H Q
Sbjct: 355 RKRDQLKPALLYQLLKG-VSS----RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQ 409
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
R + F+ + +L+ +D++ARG+D P + LVI +P E Y+HR+GRT R G+
Sbjct: 410 EQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGR 469
Query: 634 EGQGI 638
+G I
Sbjct: 470 DGTSI 474
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 130/436 (29%), Positives = 237/436 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + +S+ ++ + G ++ T VQ +P +L+G+D L AKTG+GKT AF+LP ++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P I LV+ PTRELA Q A + L K P +G++ +++GG +
Sbjct: 64 LSEDPY--------GIFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCIIVGGMDMVA 112
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P +++ATPGRL DH+ ++ F+ + ++ LV+DEAD LL+ G F D+
Sbjct: 113 QALELSRKP-HVVIATPGRLADHLRSSNTFSIKK--IRFLVMDEADRLLEQGCTDFTVDL 169
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E I+AAVP +RQTLLFSAT+ + ++++ +A + F + T EQ+ Q +L+
Sbjct: 170 EAILAAVPTRRQTLLFSATLTDTLKELQGLATNQPF-FWEA--QAPVRTVEQLDQRYLLV 226
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
P + L L++ ++ ++ +++F T +++ +L + +HS Q
Sbjct: 227 PEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKE 286
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R +F+ S IL+ +DV++RG+D P V +VI P + YIHR+GRT R G++G
Sbjct: 287 RFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQG 346
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGY 695
Q I L+ ++ + I++ +K + + + + KV + L+ V + +E +
Sbjct: 347 QAITLVTQYDIHLVHAIEEQ--IKKQLEELSVE-EAKVLQILTQVNVVRRECEIKLEAAN 403
Query: 696 YNSNKKVGRDKYKLVE 711
++ K++ + K ++E
Sbjct: 404 FDEKKEINKRKQLILE 419
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 121/365 (33%), Positives = 209/365 (57%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
+ + F +S LKGI + + K T +Q A++P+ L GKD++A A+TG+GKT A+++P
Sbjct: 128 THTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIP 187
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS-IGVQVVIGGTR 395
IE ++ P V+++ PTRELA Q E L +H + + + + +GG
Sbjct: 188 IIERLLYKPSTSTK-------VIILTPTRELALQVY-EFGKKLSHHVNNLNIGLAVGGLN 239
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
L ++++++ P I++ATPGRL DHI N+ F+ + ++VLV+DEAD +L+ GF+ ++
Sbjct: 240 LRQQEEQLKTRP-DIVIATPGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDEL 296
Query: 456 EKIIAAVPK-QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514
+I++ +PK +RQTLLFSAT+ ++ + ++L++ + ++ + ++Q +
Sbjct: 297 TEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIM--IDPPKSVASKLLQQFVRI 354
Query: 515 APLDLHFP-LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
D P LLY LL+ V+ +V+VF + +LG L L V E+H Q
Sbjct: 355 RKRDQLKPALLYQLLKG-VSS----RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQ 409
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
R + F+ + +L+ +D++ARG+D P + LVI +P E Y+HR+GRT R G+
Sbjct: 410 EQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGR 469
Query: 634 EGQGI 638
+G I
Sbjct: 470 DGTSI 474
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 130/383 (33%), Positives = 208/383 (54%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
S D+ +S L+ ++ G+++MT VQ A +P+LL KDV A+A TG+GKT+AFL+P +
Sbjct: 7 SSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPML 66
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP--SIGVQVVIGGTRL 396
E++ + + I LVI PTRELA Q + + L++ + Q+++GG +
Sbjct: 67 EILQRRHK-ETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSI 125
Query: 397 ALEQKRMQAN-PCQILVATPGRLRDHIENTA---GFATRLMGVKVLVLDEADHLLDMGFR 452
+ ++ PC ILV TPGRL D + A ++ ++ LVLDEAD LLD+GF+
Sbjct: 126 EEDIATLRRETPC-ILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFK 184
Query: 453 KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
+ I+ +P+QR+T LFSAT EV + L R+ ++ E+ S T +++ +
Sbjct: 185 TSVNNILGYLPRQRRTGLFSATQTTEVTDLIRAGL-RNPVLVSVKEKASVNTPARLQNFY 243
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSR 570
+ +L F L L KV+VF T A+ L L K V IH
Sbjct: 244 RIVEPELKFVALLEFLSSPATVIG--KVMVFFPTCACVEYWAEALPPLLPKRTVLGIHG- 300
Query: 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR 630
K ++ R V ++FR + +L+ +DV ARG+D P++ V+Q PS ++HR+GRT R
Sbjct: 301 KMKNKRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTAR 360
Query: 631 KGKEGQGILLLAPWEEFFLSTIK 653
+G EG ++ L P E+ ++ +K
Sbjct: 361 QGNEGNALVFLLPSEDAYVHFLK 383
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 138/437 (31%), Positives = 236/437 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + ++ ++ + G + T VQ + +P +L+G+D L AKTG+GKT AF+LP ++V
Sbjct: 7 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 66
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P I LV+ PTRELA Q A + L K P +G++ VV+GG +
Sbjct: 67 LSEDPY--------GIFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCVVVGGLDMVA 115
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P +++ATPGRL DH+ ++ F+ L +K LVLDEAD LL+ G F D+
Sbjct: 116 QALELSRKP-HVVIATPGRLADHLRSSNTFS--LKKLKFLVLDEADRLLEQGCADFTADL 172
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSE-ETHEQVRQMHLV 514
E I+ AVP +RQTLLFSAT+ + + ++ +A+ R + E SE T +++ Q +L+
Sbjct: 173 EVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFW----EAASEVRTVDELDQRYLL 228
Query: 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQS 574
P + L L++ ++ ++ +++F T +++ +L + +HS Q
Sbjct: 229 VPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQR 288
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R +F+ S IL+ +DV+ARG+D P V +VI P + YIHR+GRT R G+
Sbjct: 289 QRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRN 348
Query: 635 GQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLG 694
G I ++ ++ + I++ LK SV+ +K V L+HV + +E +
Sbjct: 349 GISITMVTQYDIHLVHAIEEEIKLKLQEFSVE---EKLVLDILTHVNVTRRECEIELEYM 405
Query: 695 YYNSNKKVGRDKYKLVE 711
++ K++ + K ++E
Sbjct: 406 DFDEKKEINKRKQMILE 422
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 491 (177.9 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 135/393 (34%), Positives = 209/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 268 INFDKYD---TILVEVSG-HDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 323
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+ G+D++A A+TG+GKT AFLLP + +++ R + +++ PTREL Q
Sbjct: 324 IQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI 383
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+L R C IL ATPGRL D I + G
Sbjct: 384 YLEARKF-SFGTCVRAVVIYGGTQLG-HSIRQIVQGCNILCATPGRLMDVIGKEKIG--- 438
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L VK LVLDEAD +LDMGF +++K+I+ +P +QRQTL+FSAT PEE++++
Sbjct: 439 -LRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEF 497
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V L+ +L ++ D + +VF
Sbjct: 498 LKSNYLFVAVGQVGG--ACRDVQQTILQVGQYSKREKLVEIL--RNIGDE---RTMVFVE 550
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 551 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIEN 610
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 611 VQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 643
Score = 41 (19.5 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 198 GNVGRKTRFSNDDENDVGEERRRGMSGIR 226
G GR + ++D E D G +R G+ G R
Sbjct: 160 GGFGRGSP-NSDYEQDEGTQRSGGIFGSR 187
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 491 (177.9 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 135/393 (34%), Positives = 209/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 268 INFDKYD---TILVEVSG-HDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 323
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+ G+D++A A+TG+GKT AFLLP + +++ R + +++ PTREL Q
Sbjct: 324 IQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI 383
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+L R C IL ATPGRL D I + G
Sbjct: 384 YLEARKF-SFGTCVRAVVIYGGTQLG-HSIRQIVQGCNILCATPGRLMDVIGKEKIG--- 438
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L VK LVLDEAD +LDMGF +++K+I+ +P +QRQTL+FSAT PEE++++
Sbjct: 439 -LRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEF 497
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V L+ +L ++ D + +VF
Sbjct: 498 LKSNYLFVAVGQVGG--ACRDVQQTILQVGQYSKREKLVEIL--RNIGDE---RTMVFVE 550
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 551 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIEN 610
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 611 VQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 643
Score = 41 (19.5 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 198 GNVGRKTRFSNDDENDVGEERRRGMSGIR 226
G GR + ++D E D G +R G+ G R
Sbjct: 160 GGFGRGSP-NSDYEQDEGTQRSGGIFGSR 187
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 512 (185.3 bits), Expect = 7.9e-49, P = 7.9e-49
Identities = 142/429 (33%), Positives = 224/429 (52%)
Query: 258 ENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGK 317
+ GG A S + F ++S LK I G+++ T +Q+A +PV L GK
Sbjct: 159 KKGGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGK 218
Query: 318 DVLAKAKTGT-GKTVAFLLPSIEVVIKSPPVDRDQRRPPIL-VLVICPTRELATQAATEA 375
D+ A A TGT GKT AF+LP +E +I P R+ PI VLV+ PTREL Q +
Sbjct: 219 DICACAATGTVGKTAAFILPVLERLIYKP------RQAPITRVLVLVPTRELGIQVHSVT 272
Query: 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435
L ++ S+ + +GG + ++ +++ P IL+ATPGRL DH+ N F L V
Sbjct: 273 KQLAQFS-SVTTCLAVGGLDVKTQEAALRSGP-DILIATPGRLIDHLHNCPSF--HLSSV 328
Query: 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FI 494
+VL+LDEAD +LD F + +++II + RQT+LFSAT+ EEV+ + ++LK F+
Sbjct: 329 EVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFV 388
Query: 495 NTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVA 554
N+ + + ++ ++ D + +L R P++ V++F T +
Sbjct: 389 NSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTF----PDH-VMLFTQTKKQAHRMH 443
Query: 555 DLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL 614
LLG + L V E+H Q+ R F+ + ILV +DV+ARG+D V VI +
Sbjct: 444 ILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTM 503
Query: 615 PSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPS-VDP-DTKKK 672
P+ + Y+HR+GRT R G+ G+ + L+ E L I + K PV + + P D K
Sbjct: 504 PNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI--VKAAKTPVKARILPQDVILK 561
Query: 673 VERALSHVE 681
+ ++E
Sbjct: 562 FREKIENLE 570
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 514 (186.0 bits), Expect = 9.7e-49, P = 9.7e-49
Identities = 147/478 (30%), Positives = 251/478 (52%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F Q +S + K + ++ + T VQ ++ L+GKDVL A TG+GKT+AFL+P +E
Sbjct: 73 KFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLE 132
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+ +++ R + ++I PTRELA Q + K+H ++IGG L E
Sbjct: 133 HLF----MNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHH-DFSAGLIIGGKNLKFE 187
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ RM + C IL+ TPGRL H++ F T M ++LVLDEAD LDMGF+K + II
Sbjct: 188 RTRM--DQCNILICTPGRLLQHMDENPLFNTSTM--EMLVLDEADRCLDMGFQKTLNSII 243
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN----TV-EEGSEETH--------- 505
P RQTLLFSAT V+ + + LK D ++ T EE S T
Sbjct: 244 ENFPPVRQTLLFSATQTNTVQDLARLNLK-DPVYVGYGGATPREEPSASTKKTPNTAVLA 302
Query: 506 --EQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN 563
E ++Q ++V L+ +L+ ++ H+ + K++VF + + + ++ +L+
Sbjct: 303 VPELLQQSYVVLNLEDKITMLWSFIKNHL----KQKIIVFVASCKQAKYLYEIFCKLRPG 358
Query: 564 --VREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY 621
+ ++ Q R + ++F + +++ ++DV++RG+D+P V V+Q+ P D QY
Sbjct: 359 SPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQY 418
Query: 622 IHRLGRTGRKGKEGQGILLLAPWEE-FFLSTIKDLPILKAPVPSVDP----DTKKKVERA 676
IHR GR+ R G+ +L+L P EE + +S +K+ + +DP + K+E
Sbjct: 419 IHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKLFSPRVKIEAF 478
Query: 677 LSHVEMKNKEAAYQAWLGYYNSNKKVGRDK--YKLVEL-ANEYSRSMGLDNPPAIPKL 731
L+ + + A +A+L Y S + R+K + + L + +++S+GL P +P L
Sbjct: 479 LAQFP-ELRATAQRAFLSYIKSVFLM-RNKRLFNVFSLDLDAFAQSLGLAVTPRVPFL 534
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 496 (179.7 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 146/405 (36%), Positives = 205/405 (50%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD ++ + + A Y+K T VQ+ +P+++ G+D++A A+TG+GKT AFL+P +
Sbjct: 297 FDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 356
Query: 341 VIK----SPPVDRDQ---RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
+ + PP Q R+ L LV+ PTRELATQ EA Y + V+ GG
Sbjct: 357 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA-YRSRMRPAVLYGG 415
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ EQ R C ++VATPGRL D I T G L ++ LVLDEAD +LDMGF
Sbjct: 416 NNTS-EQMRELDRGCHLIVATPGRLEDMI--TRG-KVGLENIRFLVLDEADRMLDMGFEP 471
Query: 454 DIEKIIAAV--PK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVR 509
I +I+ + P QRQTL+FSAT P++++++ L ++ F+ GS T E +
Sbjct: 472 QIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLS-NYIFLAVGRVGS--TSENIT 528
Query: 510 QMHL-VAPLDLHFPLLYVLLREHVADNPEYK----VLVFCTTAMVTRMVADLLGELKLNV 564
Q L V D LL +L + D PEY L+F T + + L + V
Sbjct: 529 QTILWVYEPDKRSYLLDLL--SSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPV 586
Query: 565 REIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHR 624
IH + Q R FR ILV + V+ARG+D P V VI LPSD E+Y+HR
Sbjct: 587 TSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 646
Query: 625 LGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPI-LKAPVPSVDPD 668
+GRTGR G G S + +L I K +PS D
Sbjct: 647 IGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMED 691
Score = 40 (19.1 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 197 AGNVGRKTRFSNDDENDVGEERRRGMSGIR 226
+GN ++TR GE RR G G R
Sbjct: 80 SGNPRQETRDPQQSRGGGGEYRRGGGGGGR 109
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 509 (184.2 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 135/397 (34%), Positives = 214/397 (53%)
Query: 257 KENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG 316
+EN A+ D+ ++ S F+Q ++S LK AGY T +Q+A +PV L G
Sbjct: 127 QENEDFFSALIDGKSLDTSVNVS-FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTG 185
Query: 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376
KD+ A A TGTGKT AF+LP +E +I P R VLV+ PTRELA Q +
Sbjct: 186 KDICACAATGTGKTAAFVLPILERMIYRPKGASCTR-----VLVLVPTRELAIQVF-QVF 239
Query: 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436
L + V + GG L ++ +++ P ++VATPGRL DH+ N+ F L ++
Sbjct: 240 RKLSTFIQLEVCLCAGGLDLKAQEAALRSGP-DVVVATPGRLIDHLHNSPSF--NLSNIE 296
Query: 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FIN 495
VLVLDEAD +L+ FR + ++I + RQTLLFSAT+ EE+ ++ ++L++ + FIN
Sbjct: 297 VLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFIN 356
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
+ + + ++ ++ D + ++ R + +VF T + +
Sbjct: 357 ENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTF-----QTNTIVFVRTKKDCQRMQI 411
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
LLG L + V ++ S Q R +F+K++ +LV++D+++RG+D V VI + +P
Sbjct: 412 LLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMP 471
Query: 616 SDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652
+QYIHR+GRT R GK G+ I L+ E L I
Sbjct: 472 KSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEI 508
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 140/367 (38%), Positives = 197/367 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F++ ++ + +GY K T VQ+ ++P LL +D+++ A+TG+GKT AFLLP I+
Sbjct: 141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 200
Query: 341 VIKS------PPVDRDQRRPPI-LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
++ PP + RR LV+ PTRELA Q EA T Y +I ++ GG
Sbjct: 201 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEA-TKFSYKSNIQTAILYGG 259
Query: 394 TRLALEQ-KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFR 452
+Q R++A IL+ATPGRL D IE GF L G + LVLDEAD +LDMGF
Sbjct: 260 RENYRDQVNRLRAGT-HILIATPGRLIDIIEQ--GFIG-LAGCRYLVLDEADRMLDMGFE 315
Query: 453 KDIEKIIAA--VPKQ-RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVR 509
I KI+ PK R T +FSAT P+E++ + LK ++ F+ GS T E +
Sbjct: 316 PQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGS--TSENIE 373
Query: 510 QMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIH 568
Q L V ++ L+ +L+ EH E VLVF T +A L ++ IH
Sbjct: 374 QRLLWVNEMEKRSNLMEILMNEH----SENLVLVFVETKRGANELAYFLNRQQIRSVSIH 429
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRT 628
Q R R + FR + ILV + V+ARG+D P+V VI LP D ++Y+HR+GRT
Sbjct: 430 GDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRT 489
Query: 629 GRKGKEG 635
GR G G
Sbjct: 490 GRCGNLG 496
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 137/362 (37%), Positives = 190/362 (52%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
S F S+ + + GY++ T +Q+ +P L+ G D+L A+TGTGKT AF LP I
Sbjct: 2 SEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPII 61
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRL 396
++ +D + L+L PTRELA+Q Y +G++ VV GG
Sbjct: 62 NKFGRNK-IDIKAKSTRSLILT--PTRELASQIMQNIDD---YSDGLGLKTKVVYGGVGR 115
Query: 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456
+ ++ ILVATPGRL D IE T ++V VLDEAD +LDMGF KD++
Sbjct: 116 QAQVDSIELG-LDILVATPGRLLDLIE-TGDI--NFKALEVFVLDEADTMLDMGFFKDVQ 171
Query: 457 KIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516
II+ +PK RQTLLFSAT+P E+ +I A+ D I E T + V Q
Sbjct: 172 SIISKLPKSRQTLLFSATMPAEI-EILAEAILTDPTKIQITAE--TVTIDLVNQSVYHLD 228
Query: 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYR 576
PLL+ +L + AD KVL+FC T ++ L + + +HS K Q+ R
Sbjct: 229 KSNKVPLLFNILTK--ADYE--KVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVR 284
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636
F+ S +LV +DV+ARG+D ++TLVI LP D YIHR+GRT R GK G
Sbjct: 285 EEALQNFKDSTLRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGM 344
Query: 637 GI 638
I
Sbjct: 345 AI 346
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 508 (183.9 bits), Expect = 2.5e-48, P = 2.5e-48
Identities = 134/384 (34%), Positives = 207/384 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++S LK I G+++ T +Q+A +PV L GKD+ A A TGTGKT AF LP +E
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 341 VIKSPPVDRDQRRPPIL-VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+I P R+ P+ VLV+ PTREL Q + L ++ SI + +GG + +
Sbjct: 249 LIYKP------RQAPVTRVLVLVPTRELGIQVHSVTKQLAQFC-SITTCLAVGGLDVKSQ 301
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++A P IL+ATPGRL DH+ N F L ++VL+LDEAD +LD F + +++II
Sbjct: 302 EAALRAAP-DILIATPGRLIDHLHNCPSF--HLSSIEVLILDEADRMLDEYFEEQMKEII 358
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FINTVEEGSEETHEQVRQMHLVAPLD 518
RQT+LFSAT+ +EV+ + ++LK F+N+ + + ++ ++ D
Sbjct: 359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 418
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
++ LL D+ V++F T + LLG + L V E+H Q+ R
Sbjct: 419 RE-AIVAALLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLE 473
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
F+ + ILV +DV+ARG+D V VI +P+ + Y+HR+GRT R G+ G+ +
Sbjct: 474 ALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSV 533
Query: 639 LLLAPWEEFFLSTIKDLPILKAPV 662
L+ E L I + KAPV
Sbjct: 534 SLVGEEERKMLKEI--VKAAKAPV 555
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 481 (174.4 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 122/340 (35%), Positives = 188/340 (55%)
Query: 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358
++K T++Q + P+ + G+D+++ AKTG+GKT+AF+LP++ + K R + P +LV
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEG-PAVLV 207
Query: 359 LVICPTRELATQAATEASTLLKYHPSIGVQV--VIGGTRLALEQKRMQANPCQILVATPG 416
L+ PTRELA Q E S + + S+G+++ + GG + + ++ I+VATPG
Sbjct: 208 LL--PTRELAQQVQ-EVS--IDFCHSLGLKMTCLFGGASKGPQARDLERG-VDIVVATPG 261
Query: 417 RLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476
RL D ++N G T + LVLDEAD +LDMGF I+KII + RQTL+FSAT P
Sbjct: 262 RLLDFLDN--G-TTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWP 318
Query: 477 EEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVL-LREHVADN 535
+EVR + ++D F+N GS E +V L+ H ++ L H+ +
Sbjct: 319 KEVRALAS-DFQKDAAFLNV---GSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQ 374
Query: 536 PEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595
E K ++F T + + IH K Q R V EF+ K I++ +D
Sbjct: 375 KECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATD 434
Query: 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
V+ARG+D D+ VI P++ E Y+HR+GRTGR K+G
Sbjct: 435 VAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKG 474
Score = 40 (19.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 86 GRRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKRFSK 128
GR G R G + + D ++ ++ + D +H N S+
Sbjct: 61 GRGGGRGGSNGSAGGRLRDVDWSAENLTPIEKDFYHENAAVSR 103
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 133/376 (35%), Positives = 208/376 (55%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
S +F + LK + +++ T +Q+ +P+ + G+D+LA +KTG+GKT+AF+LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396
+ +K+ R ILV PTRELA Q E ++L S ++ GG
Sbjct: 63 MLHKSLKTKAFSAKDPRGLILV----PTRELAKQVYGELRSMLG-GLSYTATLITGGENF 117
Query: 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456
+ K + P + +VATPGRL DH+++ + F L G++ LVLDEAD +LD+GF K++
Sbjct: 118 NDQVKALARGP-RFIVATPGRLADHLDHRSLF---LEGLETLVLDEADRMLDLGFAKELR 173
Query: 457 KII-AAVPKQRQTLLFSATVPE-EVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514
+I AA ++RQTL+FSAT+ +V + + L + + I + GSEE H+ + Q H
Sbjct: 174 RIHNAAKHRRRQTLMFSATLDHADVNDMA-MELLNEPKRI-AIGVGSEE-HKDITQ-HFY 229
Query: 515 APLDLHFPLLYVLLREHVADNPEYK-VLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
D H LL +AD EY+ V++F T T + + L + L + Q
Sbjct: 230 L-CD-HLDHKEALLDRILAD-AEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQ 286
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
+ R + +F ++ ILVT+DV++RG+D P VT VI +P E+Y+HR+GRTGR G
Sbjct: 287 TQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGN 346
Query: 634 EGQGILLLAP--WEEF 647
+G + L+ P WE F
Sbjct: 347 KGDAMSLVGPKDWESF 362
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 133/376 (35%), Positives = 208/376 (55%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
S +F + LK + +++ T +Q+ +P+ + G+D+LA +KTG+GKT+AF+LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396
+ +K+ R ILV PTRELA Q E ++L S ++ GG
Sbjct: 63 MLHKSLKTKAFSAKDPRGLILV----PTRELAKQVYGELRSMLG-GLSYTATLITGGENF 117
Query: 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456
+ K + P + +VATPGRL DH+++ + F L G++ LVLDEAD +LD+GF K++
Sbjct: 118 NDQVKALARGP-RFIVATPGRLADHLDHRSLF---LEGLETLVLDEADRMLDLGFAKELR 173
Query: 457 KII-AAVPKQRQTLLFSATVPE-EVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514
+I AA ++RQTL+FSAT+ +V + + L + + I + GSEE H+ + Q H
Sbjct: 174 RIHNAAKHRRRQTLMFSATLDHADVNDMA-MELLNEPKRI-AIGVGSEE-HKDITQ-HFY 229
Query: 515 APLDLHFPLLYVLLREHVADNPEYK-VLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
D H LL +AD EY+ V++F T T + + L + L + Q
Sbjct: 230 L-CD-HLDHKEALLDRILAD-AEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQ 286
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
+ R + +F ++ ILVT+DV++RG+D P VT VI +P E+Y+HR+GRTGR G
Sbjct: 287 TQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGN 346
Query: 634 EGQGILLLAP--WEEF 647
+G + L+ P WE F
Sbjct: 347 KGDAMSLVGPKDWESF 362
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 137/393 (34%), Positives = 212/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 251 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 306
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + +++ R + +++ PTREL Q
Sbjct: 307 VLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI 366
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+ R C IL ATPGRL D I + G
Sbjct: 367 YLEARKF-SFGTCVRAVVIYGGTQFG-HSIRQIVQGCNILCATPGRLMDIIGKEKIG--- 421
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L VK LVLDEAD +LDMGF +++K+I+ +P +QRQTLLFSAT PEE++++
Sbjct: 422 -LKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEF 480
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V P+ L+ +L ++ D + +VF
Sbjct: 481 LKSNYLFVAVGQVGG--ACRDVQQSILQVGPVFKKRKLVEIL--RNIGDE---RPMVFVE 533
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 534 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIEN 593
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 594 VQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAI 626
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 137/393 (34%), Positives = 212/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 251 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 306
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + +++ R + +++ PTREL Q
Sbjct: 307 VLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI 366
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+ R C IL ATPGRL D I + G
Sbjct: 367 YLEARKF-SFGTCVRAVVIYGGTQFG-HSIRQIVQGCNILCATPGRLMDIIGKEKIG--- 421
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L VK LVLDEAD +LDMGF +++K+I+ +P +QRQTLLFSAT PEE++++
Sbjct: 422 -LKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEF 480
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V P+ L+ +L ++ D + +VF
Sbjct: 481 LKSNYLFVAVGQVGG--ACRDVQQSILQVGPVFKKRKLVEIL--RNIGDE---RPMVFVE 533
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 534 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIEN 593
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 594 VQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAI 626
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 505 (182.8 bits), Expect = 5.6e-48, P = 5.6e-48
Identities = 133/384 (34%), Positives = 207/384 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++S LK I G+++ T +Q+A +PV L GKD+ A A TGTGKT AF LP +E
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 341 VIKSPPVDRDQRRPPIL-VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+I P R+ P+ VLV+ PTREL Q + L ++ +I + +GG + +
Sbjct: 249 LIYKP------RQSPVTRVLVLVPTRELGIQVHSVTKQLAQFC-NITTCLAVGGLDVKSQ 301
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++A P IL+ATPGRL DH+ N F L ++VL+LDEAD +LD F + +++II
Sbjct: 302 EAALRAAP-DILIATPGRLIDHLHNCPSF--HLSSIEVLILDEADRMLDEYFEEQMKEII 358
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FINTVEEGSEETHEQVRQMHLVAPLD 518
RQT+LFSAT+ +EV+ + ++LK F+N+ + + ++ ++ D
Sbjct: 359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGD 418
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
++ LL D+ V++F T + LLG + L V E+H Q+ R
Sbjct: 419 RE-AIVAALLTRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLE 473
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
F+ + ILV +DV+ARG+D V VI +P+ + Y+HR+GRT R G+ G+ +
Sbjct: 474 ALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSV 533
Query: 639 LLLAPWEEFFLSTIKDLPILKAPV 662
L+ E L I + KAPV
Sbjct: 534 SLVGEEERKMLKEI--VKAAKAPV 555
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 502 (181.8 bits), Expect = 5.8e-48, P = 5.8e-48
Identities = 136/393 (34%), Positives = 210/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 264 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 319
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + ++ R + +++ PTREL Q
Sbjct: 320 ILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQI 379
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+L R C IL ATPGRL D I + G
Sbjct: 380 YLEARKF-SFGTCVRAVVIYGGTQLG-HSIRQIVQGCNILCATPGRLMDIIGKEKIG--- 434
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L +K LVLDEAD +LDMGF +++K+I+ +P +QRQTL+FSAT PEE++++
Sbjct: 435 -LKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEF 493
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V LL +L ++ D + +VF
Sbjct: 494 LKSNYLFVAVGQVGG--ACRDVQQADLQVGQYSKREKLLEIL--RNIGDE---RTMVFVE 546
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 547 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIEN 606
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 607 VQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 639
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 130/436 (29%), Positives = 234/436 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + +S+ ++ + G ++ T VQ +P +L+G+D L AKTG+GKT AF+LP ++
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P I LV+ PTRELA Q A + L K P +G++ +++GG +
Sbjct: 64 LSEDPY--------GIFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCIIVGGMDMVT 112
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P +++ATPGRL DH+ ++ F + ++ LVLDEAD LL+ G F D+
Sbjct: 113 QALELSRKP-HVVIATPGRLADHLRSSNTF--NMKKIRFLVLDEADRLLEQGCTDFTADL 169
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E I++AVP +RQTLLFSAT+ + ++++ +A + F + + T EQ+ Q +L+
Sbjct: 170 ETILSAVPARRQTLLFSATLTDTLKELQGLATNQPF-FWEA--QATVRTVEQLDQRYLLV 226
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
P + L L++ + +++F T +++ +L + +HS Q
Sbjct: 227 PEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKE 286
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R F+ S IL+ +DV++RG+D P V +VI P + YIHR+GRT R G++G
Sbjct: 287 RFAALARFKSSTYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQG 346
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGY 695
Q I L+ ++ L I++ +K + + + + +V + L+ V + +E + +
Sbjct: 347 QAITLVTQYDIHLLHAIEEE--IKQQLAELAVE-EAQVLQILTQVNVVRRECEIKLEASH 403
Query: 696 YNSNKKVGRDKYKLVE 711
++ K++ + K ++E
Sbjct: 404 FDEKKEINKRKQMILE 419
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 502 (181.8 bits), Expect = 6.6e-48, P = 6.6e-48
Identities = 141/420 (33%), Positives = 221/420 (52%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 267 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 322
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + ++ R + +++ PTREL Q
Sbjct: 323 ILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQI 382
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+L +++ C IL ATPGRL D I + G
Sbjct: 383 YLEARKF-SFGTCVRAVVIYGGTQLGYSIRQI-VQGCNILCATPGRLMDIIGKEKIG--- 437
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L VK LVLDEAD +LDMGF +++K+I+ +P +QRQTL+FSAT PEE++++
Sbjct: 438 -LRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEF 496
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTT 546
LK ++ F+ + G V+Q L L +LR + D + +VF T
Sbjct: 497 LKSNYLFVAVGQVGG--ACRDVQQTILQVGQYSKREKLVEILRS-IGDE---RTMVFVET 550
Query: 547 AMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDV 606
+A L + K++ IH + Q R + +FR K +LV + V+ARG+D +V
Sbjct: 551 KKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENV 610
Query: 607 TLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLST--IKDLPILKAPVPS 664
VI LPS ++Y+HR+GRTGR G G+ I P + L+ +K L + VP+
Sbjct: 611 QHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPA 670
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 505 (182.8 bits), Expect = 7.0e-48, P = 7.0e-48
Identities = 133/384 (34%), Positives = 207/384 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++S LK I G+++ T +Q+A +PV L GKD+ A A TGTGKT AF LP +E
Sbjct: 210 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 269
Query: 341 VIKSPPVDRDQRRPPIL-VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+I P R+ P+ VLV+ PTREL Q + L ++ +I + +GG + +
Sbjct: 270 LIYKP------RQSPVTRVLVLVPTRELGIQVHSVTKQLAQFC-NITTCLAVGGLDVKSQ 322
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++A P IL+ATPGRL DH+ N F L ++VL+LDEAD +LD F + +++II
Sbjct: 323 EAALRAAP-DILIATPGRLIDHLHNCPSF--HLSSIEVLILDEADRMLDEYFEEQMKEII 379
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FINTVEEGSEETHEQVRQMHLVAPLD 518
RQT+LFSAT+ +EV+ + ++LK F+N+ + + ++ ++ D
Sbjct: 380 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGD 439
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
++ LL D+ V++F T + LLG + L V E+H Q+ R
Sbjct: 440 RE-AIVAALLTRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLE 494
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
F+ + ILV +DV+ARG+D V VI +P+ + Y+HR+GRT R G+ G+ +
Sbjct: 495 ALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSV 554
Query: 639 LLLAPWEEFFLSTIKDLPILKAPV 662
L+ E L I + KAPV
Sbjct: 555 SLVGEEERKMLKEI--VKAAKAPV 576
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 130/436 (29%), Positives = 234/436 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + +S+ ++ + G ++ T VQ +P +L+G+D L AKTG+GKT AF+LP ++
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P I LV+ PTRELA Q A + L K P +G++ +++GG +
Sbjct: 64 LSEDPY--------GIFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCIIVGGMDMVA 112
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P +++ATPGRL DH+ ++ F + ++ LV+DEAD LL+ G F D+
Sbjct: 113 QALELSRKP-HVVIATPGRLADHLRSSNTF--NMKKIQFLVMDEADRLLEQGCTDFTTDL 169
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E I+AAVP +RQTLLFSAT+ + ++++ +A F + + T EQ+ Q +L+
Sbjct: 170 ETILAAVPARRQTLLFSATLTDTLKELQGLATNEPF-FWEA--QATVRTVEQLDQRYLLV 226
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
P + L L++ + +++F T +++ +L + +HS Q
Sbjct: 227 PEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKE 286
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R +F+ S IL+ +DV++RG+D P V +VI P + YIHR+GRT R G++G
Sbjct: 287 RFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQG 346
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGY 695
Q I L+ ++ L I++ +K + + + + +V + L+ V + +E + +
Sbjct: 347 QAITLVTQYDIHLLHAIEEQ--IKQQLAELVVE-EAEVLQILTQVNVVRRECEIKLEASH 403
Query: 696 YNSNKKVGRDKYKLVE 711
++ K++ + K ++E
Sbjct: 404 FDEKKEINKRKQMILE 419
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 133/376 (35%), Positives = 201/376 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +S + I+ AGY + T VQ+ +P +L+G+D++ A+TGTGKT F LP +E
Sbjct: 3 FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 341 VIKSPPVDRDQRRPPIL--VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
+ + D+ QR P VLV+ PTRELA Q + + + GG +
Sbjct: 63 LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSA-CIFGGVGMNP 121
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFAT-RLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ + M A +LVA PGRL D AG + L V++LVLDEAD +LDMGF D++K
Sbjct: 122 QVQAM-ARGVDVLVACPGRLLD----LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK 176
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
++A +P +RQ LLFSAT +++ + L + E I + T E++ Q P
Sbjct: 177 VLARLPAKRQNLLFSATFSKDITDLAG-KLLHNPERIEVTPPNT--TVERIEQRVFRLPA 233
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
LL L+ + +VLVF T +A+ L + L+ IH K Q+ RT
Sbjct: 234 SHKRALLAHLITAGAWE----QVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNART 289
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
+ +F+ + ILV +D++ARG+D + V+ LP+ E Y+HR+GRTGR G+ G+
Sbjct: 290 KALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEA 349
Query: 638 ILLLAPWEEFFLSTIK 653
I L+AP EE L +I+
Sbjct: 350 ISLVAPDEEKLLKSIE 365
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 143/422 (33%), Positives = 215/422 (50%)
Query: 285 SISALSLKG-----IKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
S SALSL + + GY++ T +Q +P +L +DV+A A+TGTGKT AF LP ++
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTRLA 397
+++ D + I LV+ PTRELA Q + +KY ++V I GG +
Sbjct: 62 LLMADNQSDHAAKA--IRALVLVPTRELALQVQ---QSFVKYAKGTDIRVGIAYGGVSIE 116
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+Q A +L+ATPGRL DH+ G A L + LV DEAD +LDMGF +I+
Sbjct: 117 AQQAVFNAG-IDVLIATPGRLLDHLRQ--G-ALNLNQLNTLVFDEADRMLDMGFMDEIQA 172
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
++ VP QRQTLLFSAT+ + + L RD + I + + T Q+ Q V +
Sbjct: 173 VLKQVPAQRQTLLFSATLDDSIFSFSKNLL-RDPKRIEVAKPNT--TAAQIEQR--VYAI 227
Query: 518 DLHFPLLYVLLREHVADNPEYK-VLVFCTTAM-VTRMVADLLGELKLNVREIHSRKPQSY 575
D +V H+ + ++ VL+F T V ++ A L +L + + H Q
Sbjct: 228 DSDRKTEFV---SHLVRSKNWQQVLIFSRTKQGVDKLTAQL-NKLGVATQSFHGDLSQGA 283
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R +V EF++ +LV +DV+ARG+D ++ VI LP E YIHR+GRTGR G G
Sbjct: 284 REKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAG 343
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAP---VPSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
I L + + L ++ L + P P +PD K + + + K+ A +
Sbjct: 344 LAITLFSQEDALLLEEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKKRA 403
Query: 693 LG 694
LG
Sbjct: 404 LG 405
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 139/376 (36%), Positives = 205/376 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + ++ LK + GY + T VQ A +P L+ D+LA A+TGTGKT AF+LP+++
Sbjct: 3 FAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQR 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ SPP + R P VLV+ PTRELA Q T+A + ++GG Q
Sbjct: 63 -LSSPP--QGPGRGP-RVLVLTPTRELAQQV-TDAVRTYGAFMRVRSGAILGGMPYHA-Q 116
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
R+ + P +VATPGRL D ++ + +RL ++LVLDEAD +LDMGF D+++I A
Sbjct: 117 LRLLSAPVDFIVATPGRLVDLLDRRSLDLSRL---ELLVLDEADRMLDMGFSDDVDRIAA 173
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
A P RQTLLF+AT+ + ++ L R+ E I+ G++ THE + Q VA DLH
Sbjct: 174 ASPATRQTLLFTATMDSAMARLAG-RLLREPERIDIA--GTKTTHEHIEQRLHVAD-DLH 229
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKL---NVREIHSRKPQSYRT 577
LLR + D + ++F T R +L ELK + +H PQ+ R
Sbjct: 230 HKNR--LLRHLITDESLRRAIIFSATK---RDAENLALELKAQGHSAAALHGDMPQNARN 284
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
R ++ + +LV +DV+ARG+D ++ VI LP E Y+HR+GRTGR G G
Sbjct: 285 RTIAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIA 344
Query: 638 ILLLAPWEEFFLSTIK 653
I + E +L+ I+
Sbjct: 345 ISFASLNEVNYLARIE 360
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 143/422 (33%), Positives = 215/422 (50%)
Query: 285 SISALSLKG-----IKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
S SALSL + + GY++ T +Q +P +L +DV+A A+TGTGKT AF LP ++
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTRLA 397
+++ D + I LV+ PTRELA Q + +KY ++V I GG +
Sbjct: 62 LLMADNQSDHAAKA--IRALVLVPTRELALQVQ---QSFVKYAKGTDIRVGIAYGGVSIE 116
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+Q A +L+ATPGRL DH+ G A L + LV DEAD +LDMGF +I+
Sbjct: 117 AQQAVFNAG-IDVLIATPGRLLDHLRQ--G-ALNLNQLNTLVFDEADRMLDMGFMDEIQA 172
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
++ VP QRQTLLFSAT+ + + L RD + I + + T Q+ Q V +
Sbjct: 173 VLKQVPAQRQTLLFSATLDDSIFSFSKNLL-RDPKRIEVAKPNT--TAAQIEQR--VYAI 227
Query: 518 DLHFPLLYVLLREHVADNPEYK-VLVFCTTAM-VTRMVADLLGELKLNVREIHSRKPQSY 575
D +V H+ + ++ VL+F T V ++ A L +L + + H Q
Sbjct: 228 DSDRKTEFV---SHLVRSKNWQQVLIFSRTKQGVDKLTAQL-NKLGVATQSFHGDLSQGA 283
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R +V EF++ +LV +DV+ARG+D ++ VI LP E YIHR+GRTGR G G
Sbjct: 284 REKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAG 343
Query: 636 QGILLLAPWEEFFLSTIKDLPILKAP---VPSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
I L + + L ++ L + P P +PD K + + + K+ A +
Sbjct: 344 LAITLFSQEDALLLEEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKKRA 403
Query: 693 LG 694
LG
Sbjct: 404 LG 405
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 136/384 (35%), Positives = 202/384 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F Q + + L + + G T +Q+ +P +L+GKDVLA A+TGTGKT AF LP I+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
I+ P R+ I LV+ PTRELA Q K + + V GGT + ++
Sbjct: 68 FIEQP-WQREANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKVQL 125
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++ IL+ATPGRL DH + F + V+VLVLDEAD +LDMGF D+++++
Sbjct: 126 NHLRGG-VDILIATPGRLLDHAHVKSLFLGK---VEVLVLDEADRMLDMGFMPDLQRVLR 181
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ RQTL FSAT +++ + + + RD I S T E V+QM V P+D
Sbjct: 182 RLSPLRQTLFFSATFDSKIKAVAY-RIMRDP--IEVQVTPSNSTAETVQQM--VYPVDKK 236
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN-VR--EIHSRKPQSYRT 577
LL + +VLVF T + +A+ ELKL+ ++ I+ K Q R
Sbjct: 237 RKR--ELLSYLIGSKNWQQVLVFTKTRQGSDALAE---ELKLDGIKAVSINGDKSQGARQ 291
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
+ D+F+ K L+ +DV+ARG+D + V+ +P E Y+HR+GRTGR G G
Sbjct: 292 KALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLA 351
Query: 638 ILLLAPWEEFFLSTIKDLPILKAP 661
+ LL+ E+ L I+ L + P
Sbjct: 352 VSLLSHDEQPQLEAIERLLNTRLP 375
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 136/384 (35%), Positives = 202/384 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F Q + + L + + G T +Q+ +P +L+GKDVLA A+TGTGKT AF LP I+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
I+ P R+ I LV+ PTRELA Q K + + V GGT + ++
Sbjct: 68 FIEQP-WQREANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKVQL 125
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++ IL+ATPGRL DH + F + V+VLVLDEAD +LDMGF D+++++
Sbjct: 126 NHLRGG-VDILIATPGRLLDHAHVKSLFLGK---VEVLVLDEADRMLDMGFMPDLQRVLR 181
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ RQTL FSAT +++ + + + RD I S T E V+QM V P+D
Sbjct: 182 RLSPLRQTLFFSATFDSKIKAVAY-RIMRDP--IEVQVTPSNSTAETVQQM--VYPVDKK 236
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN-VR--EIHSRKPQSYRT 577
LL + +VLVF T + +A+ ELKL+ ++ I+ K Q R
Sbjct: 237 RKR--ELLSYLIGSKNWQQVLVFTKTRQGSDALAE---ELKLDGIKAVSINGDKSQGARQ 291
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
+ D+F+ K L+ +DV+ARG+D + V+ +P E Y+HR+GRTGR G G
Sbjct: 292 KALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLA 351
Query: 638 ILLLAPWEEFFLSTIKDLPILKAP 661
+ LL+ E+ L I+ L + P
Sbjct: 352 VSLLSHDEQPQLEAIERLLNTRLP 375
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 135/412 (32%), Positives = 225/412 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + ++ ++ + G + T VQ + +P +L+G+D L AKTG+GKT AF+LP ++V
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + P I LV+ PTRELA Q A + L K P +G++ VV+GG +
Sbjct: 64 LSEDPY--------GIFCLVLTPTRELAYQIAEQFRVLGK--P-LGLKDCVVVGGLDMVA 112
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG---FRKDI 455
+ + P +++ATPGRL DH+ ++ F+ L +K LVLDEAD LL+ G F D+
Sbjct: 113 QALELSRKP-HVVIATPGRLADHLRSSNTFS--LKKLKFLVLDEADRLLEQGCADFTADL 169
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSE-ETHEQVRQMHLV 514
E I+ AVP +RQTLLFSAT+ + + ++ +A+ R + E SE T +++ Q +L+
Sbjct: 170 EVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFW----EAASEVRTVDELDQRYLL 225
Query: 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQS 574
P + L L++ ++ ++ +++F T +++ +L + +HS Q
Sbjct: 226 VPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQR 285
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R +F+ S IL+ +DV+ARG+D P V +VI P + YIHR+GRT R G+
Sbjct: 286 QRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRN 345
Query: 635 GQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKE 686
G I ++ ++ + I++ LK SV+ +K V L+HV + +E
Sbjct: 346 GISITMVTQYDIHLVHAIEEEIKLKLQEFSVE---EKLVLDILTHVNVTRRE 394
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 136/393 (34%), Positives = 209/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 239 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 294
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + +++ R + +++ PTREL Q
Sbjct: 295 VLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI 354
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+ R C IL ATPGRL D I + G
Sbjct: 355 YLEARKF-SFGTCVRAVVIYGGTQFG-HSVRQIVQGCNILCATPGRLMDIIGKEKIG--- 409
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L VK LVLDEAD +LDMGF +++K+I+ +P +QRQTLLFSAT PEE++++
Sbjct: 410 -LKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGDF 468
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK + F+ + G V+Q L V L+ +L ++ D + +VF
Sbjct: 469 LKSSYLFVAVGQVGG--ACRDVQQTILQVGQYSKREKLVEIL--RNIGDE---RTMVFVE 521
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 522 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIEN 581
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 582 VQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 614
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 136/393 (34%), Positives = 210/393 (53%)
Query: 253 IGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV 312
I DK + ++ + G HD+ + F++ ++ I AGY K+T VQ+ ++P+
Sbjct: 240 INFDKYD---TILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI 295
Query: 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQA 371
+L G+D++A A+TG+GKT AFLLP + +++ R + +++ PTREL Q
Sbjct: 296 VLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI 355
Query: 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFAT 430
EA + + V+ GGT+ R C IL ATPGRL D I + G
Sbjct: 356 YLEARKF-SFGTCVRAVVIYGGTQFG-HSIRQIVQGCNILCATPGRLMDIIGKEKIG--- 410
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L VK LVLDEAD +LDMGF +++K+I+ +P +QRQTLLFSAT PEE++++
Sbjct: 411 -LKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEF 469
Query: 487 LKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545
LK ++ F+ + G V+Q L V L+ +L ++ D + +VF
Sbjct: 470 LKSNYLFVAVGQVGG--ACRDVQQSILQVGQYSKREKLVEIL--RNIGDE---RTMVFVE 522
Query: 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
T +A L + K++ IH + Q R + +FR K +LV + V+ARG+D +
Sbjct: 523 TKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIEN 582
Query: 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
V VI LPS ++Y+HR+GRTGR G G+ I
Sbjct: 583 VQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 615
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 152/441 (34%), Positives = 225/441 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + L ++ IK A + K T VQ+ ++P++ KG+D++A A+TG+GKT FL P
Sbjct: 156 FSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTE 215
Query: 341 VIKS-P-PV-DRDQ----RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
+ +S P PV ++ Q R+ LV+ PTRELATQ EA Y + VV GG
Sbjct: 216 LFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFT-YRSWVRPCVVYGG 274
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ + + + C +LVATPGRL D +E G + L +K LVLDEAD +LDMGF
Sbjct: 275 APIGNQMREVDRG-CDLLVATPGRLNDLLER--GKVS-LANIKYLVLDEADRMLDMGFEP 330
Query: 454 DIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVR 509
I I+ +P + RQTL+FSAT P +++ + L ++ F++ GS T E +
Sbjct: 331 QIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGS--TSENIT 387
Query: 510 QMHL-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIH 568
Q L V +D LL +L EH L+F T + + D L IH
Sbjct: 388 QRILYVDDMDKKSALLDLLSAEHKG-----LTLIFVETKRMADQLTDFLIMQNFKATAIH 442
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRT 628
+ Q+ R R F+ + ILV + V+ARG+D P+VT VI LPSD + Y+HR+GRT
Sbjct: 443 GDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRT 502
Query: 629 GRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAA 688
GR G G FF S ++ I+K + ++ + ++V LS + +N
Sbjct: 503 GRAGNTGVAT-------SFFNSNNQN--IVKGLMEILN-EANQEVPTFLSDLSRQNSRGG 552
Query: 689 Y-QAWLGYYNSNKKVGRDKYK 708
+ G++NS RD K
Sbjct: 553 RTRGGGGFFNSRNNGSRDYRK 573
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 131/364 (35%), Positives = 190/364 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +S L I D GY K T +Q+ +PV+L GKD++A A+TGTGKT +F+LP +E
Sbjct: 3 FSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQ 62
Query: 341 VIKS-PPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+ + R I L++ PTRELA Q S KY I + GG A E
Sbjct: 63 LNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYL-DISSMAMYGGVD-AQE 120
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
QK+ ILVATPGRL D L +LVLDEAD +LDMGF DI KII
Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDEL---DMLVLDEADRMLDMGFIDDINKII 177
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+P+ RQ LLFSAT+ EEVR + A + H+ + + G+++ + + LV +D
Sbjct: 178 ERLPEHRQNLLFSATMSEEVRGL---AKRTIHKPVE-ISIGADKASKPKIEQWLVT-VD- 231
Query: 520 HFPLLYVLLREHVADNPEYK-VLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
L H+ ++ L+F T + L + + IHS + Q R +
Sbjct: 232 --KANKSALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREK 289
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ ++F+ K LV + ++ARG+D +++ VI LP+ + YIHR+GRTGR G G+ I
Sbjct: 290 ILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAI 349
Query: 639 LLLA 642
L++
Sbjct: 350 SLVS 353
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 129/474 (27%), Positives = 235/474 (49%)
Query: 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLL 335
M+ +F Q + + + ++ + T VQ A +P +L+G D+L A+TGTGKT+AF +
Sbjct: 86 MTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAI 145
Query: 336 PSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP-SIGVQVVIGGT 394
P ++ + P I L++ PTRELA Q A + + L K P ++ V++GG
Sbjct: 146 PILQKLSVDPY--------GIYALILTPTRELAFQIAEQFTALGK--PITLKCSVIVGGR 195
Query: 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG-VKVLVLDEADHLLDMGFRK 453
L + + + P ++VATPGRL D IE+ ++ ++ VLDEAD +L+ +
Sbjct: 196 SLIHQARELSERP-HVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYND 254
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513
++ I ++ ++RQTLL SAT+ + + ++ ++ + F + E T +++ Q ++
Sbjct: 255 QLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPY-FFEDKGKDDESTVDRLEQKYV 313
Query: 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
V P+ + L +++ + NP+ V++F T + +A + L V +HS+ PQ
Sbjct: 314 VCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQ 373
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
R FR +++ +DV++RG+D P V LV+ +P + YIHR+GR+ R G+
Sbjct: 374 KQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGR 433
Query: 634 EGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWL 693
G + + ++ L ++ + K V P K V + ++ V + KEA +
Sbjct: 434 FGSALSFVTQYDVELLQAVEQVIGKKLDELKVSP---KHVTKYVTQVLVAKKEAELKLEN 490
Query: 694 GYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 747
+ K++ R K L+ +E L+ ++ K L I G K
Sbjct: 491 QKFGEKKEINRRKELLMSGMDEDEADRHLEEMRT-RRMTNSKRKLEKISGQLDK 543
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 130/358 (36%), Positives = 189/358 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD+ L +K G+EK T +Q P+ L G+DV+ A+TG+GKT+++ LP+I V
Sbjct: 142 FDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI-V 200
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
I + P+ P +VL++ PTRELA Q E S K I V GG Q
Sbjct: 201 HINAQPLLAPGDGP--IVLILAPTRELAVQIQAEISKFGK-SSRIRNTCVYGGVPKG-PQ 256
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
R + ++ +ATPGRL D +E AG T L V LVLDEAD +LDMGF I KII+
Sbjct: 257 IRDLSRGVEVCIATPGRLIDMLE--AG-RTNLRRVTYLVLDEADRMLDMGFEPQIRKIIS 313
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ RQT ++SAT P+EVRQ+ L ++ +N H + + +++ +
Sbjct: 314 QIRPDRQTCMWSATWPKEVRQLASDFLN-NYIQVNIGSMDLSANHRITQIVEVISEFEKR 372
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580
++ L E + +N K LVF T + + L + IH K Q R V
Sbjct: 373 DRMIKHL--EKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVL 430
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+EF+ K I+V +DV++RG+D D+T VI P++ E Y+HR+GRTGR G +G I
Sbjct: 431 NEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAI 488
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 133/401 (33%), Positives = 216/401 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + +K + G++ + +Q LP L+GKDV+ A+TG+GKT AF +P ++
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 341 VIK----SPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396
+++ S P + P V+ PTRELA Q A E L S+ V++GG
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA-EQFEALGADISLRCAVLVGGIDR 129
Query: 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456
+ + P ++VATPGRL DH+ +T GF+ L +K LVLDEAD LL+ F K +
Sbjct: 130 MQQTIALGKRP-HVIVATPGRLWDHMSDTKGFS--LKSLKYLVLDEADRLLNEDFEKSLN 186
Query: 457 KIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516
+I+ +P +R+T LFSAT+ ++VR++ L+ + + + +T +Q Q VA
Sbjct: 187 QILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQ--QYRFVAA 244
Query: 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYR 576
L+Y+L ++ PE ++F T TR +A +L L I + QS R
Sbjct: 245 KYKDCYLVYIL-----SEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKR 299
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636
++F+ + ILV +DV++RG+D P V +VI +P++ + YIHR+GRT R G+ G
Sbjct: 300 LGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGV 359
Query: 637 GILLLAPWE-EFFLSTIKDLPILKAP-VPSVDPDTKKKVER 675
GI L+ +E E+++ I+ L K P P+ + + +ER
Sbjct: 360 GISLVNQYELEWYIQ-IEKLIGKKLPEYPAEEDEVLSLLER 399
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 134/401 (33%), Positives = 219/401 (54%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
++ I+ AG++K T +Q + P++L+G D++ A+TGTGKT+++L+P + I S PV R
Sbjct: 213 MQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGF-IHIHSQPVSRK 271
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
QR P + LV+ PTRELA Q E S L Y V + GG R Q + I
Sbjct: 272 QRNGPGM-LVLTPTRELALQVEAECSKYL-YKGLKSVCIYGGGNRKGQIQDVTKG--VDI 327
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
++ATPGRL D N F L + LVLDEAD +LD+GF I KI+ V RQT++
Sbjct: 328 IIATPGRLNDLQMNN--FVN-LRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVM 384
Query: 471 FSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
+A+ P+ R++ LK+ ++ T++ + T V+Q +V + L+ L+
Sbjct: 385 TTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNT---VKQNIIVTTEEEKRSLVKEFLQ 441
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+P+ KV+VF + +V ++ L + V+ +H + QS R + ++FR +
Sbjct: 442 SL---SPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVK 498
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL 649
IL+ +D++ARG+D DVT V P + E+Y+HR+GRTGR GK G+ I L+ +++ +
Sbjct: 499 ILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQ-DDWKI 557
Query: 650 STIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQ 690
+ + + IL+ V P + +R + KN+ + Q
Sbjct: 558 AD-ELIKILQRANQIVPPSLRSMADRFKKQHKQKNQPHSNQ 597
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 128/363 (35%), Positives = 190/363 (52%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
++F +S LK ++D GYE + +Q +P ++ G+DV+A A+TGTGKT F LP +
Sbjct: 6 TKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLL 65
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
+ + S + L++ PTRELA Q + KY ++ VV GG ++
Sbjct: 66 QRLSSSKGNKVSSNN--VRALILTPTRELAAQISESIEVYGKYL-NLHSMVVFGGVKINP 122
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ R++ +LVATPGRL D + N A + ++V +LDEAD +LDMGF +DI+K+
Sbjct: 123 QIARLRQG-VDVLVATPGRLLD-LYNQR--AVKFSQLEVFILDEADRMLDMGFIRDIKKL 178
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
+ A+PK RQ LLFSAT E+R + + E I+ E S T E+V Q L A
Sbjct: 179 MTALPKDRQNLLFSATFSPEIRALAKGMVNNPLE-ISVDAENS--TAEKVTQW-LTAVDK 234
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
P +L + +N +VLVF T + L L IH K Q RT+
Sbjct: 235 KRKP---AVLTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTK 291
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
F+ ILV +D++ARG+D + V+ LP+ E Y+HR+GRT R G GQ +
Sbjct: 292 ALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQAL 351
Query: 639 LLL 641
L+
Sbjct: 352 SLV 354
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 142/393 (36%), Positives = 208/393 (52%)
Query: 263 SVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAK 322
+++ + P ++ + +FD+ +SA +G+K+ Y++ T +Q AT P LL G+DV+
Sbjct: 151 NISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGI 208
Query: 323 AKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYH 382
A+TG+GKTVAF +P+++ + D + P VLV+ PTRELA Q ++L++
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLS----DNKSVP-RVLVVSPTRELAIQTYENLNSLIQ-G 262
Query: 383 PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDE 442
++ VV GG + EQ R N +++ TPGRL D I N +G LVLDE
Sbjct: 263 TNLKAVVVYGGAPKS-EQARAAKN-ASVIIGTPGRLLDLI-NDGSIDCSQVGY--LVLDE 317
Query: 443 ADHLLDMGFRKDIEKIIAAVPK-----QRQTLLFSATVPEEVRQICHIALKRDHEFINTV 497
AD +LD GF +DI II+ P RQT+ FSAT PE VR + LK D I T+
Sbjct: 318 ADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLK-DPVKI-TI 375
Query: 498 EEGSEETHEQVRQMHLVAPLD---LHFPLLYVLLREHVADN-PEYKVLVFCTTAMVTRMV 553
GS+E +V LD +L LLR+H++ + K+L+F V
Sbjct: 376 --GSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARV 433
Query: 554 ADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVG 613
L K NV IH Q R + ++F+ K +LV +DV+ARG+D P V LVI V
Sbjct: 434 EGTLAR-KYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVT 492
Query: 614 LPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646
P E Y+HR+GRTGR +G I P ++
Sbjct: 493 FPLTIEDYVHRIGRTGRANTKGTAITFFTPQDK 525
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 496 (179.7 bits), Expect = 5.3e-47, P = 5.3e-47
Identities = 136/372 (36%), Positives = 195/372 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F+ C S+ + IK YEK T +Q LP++L G+DV+ AKTG+GKT AF+LP I
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 341 VIKSPPVDRDQRRPPILVLVIC-PTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
++ P + RD+ PI V IC PTRELA Q EA K + + V V GG +
Sbjct: 290 IMDQPELQRDEG--PIGV--ICAPTRELAHQIFLEAKKFSKAY-GLRVSAVYGGMSKHEQ 344
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
K ++A C+I+VATPGRL D ++ A +M LVLDEAD + D+GF + I+
Sbjct: 345 FKELKAG-CEIVVATPGRLIDMLKMKA---LTMMRASYLVLDEADRMFDLGFEPQVRSIV 400
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+ RQTLLFSAT+P +V ++ L D + E G +E + Q+ V P D
Sbjct: 401 GQIRPDRQTLLFSATMPWKVEKLAREILS-DPIRVTVGEVGM--ANEDITQVVNVIPSDA 457
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTT-AMVTRMVADL-LGELKLNVREIHSRKPQSYRT 577
L LL + E VLVF + A V + A L L K V +H K Q+ R
Sbjct: 458 E--KLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFK--VAALHGDKDQASRM 513
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG-KEGQ 636
+F+ +L+ +DV+ARG+D + V+ + D + ++HR+GRTGR G ++G
Sbjct: 514 ETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGV 573
Query: 637 GILLLAPWEEFF 648
L+ E F
Sbjct: 574 AYTLVTQREARF 585
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 462 (167.7 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 127/370 (34%), Positives = 194/370 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE- 339
F++ + I +GY K T VQ+ LP++ G+D++A A+TG+GKT AFLLP ++
Sbjct: 183 FEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQ 242
Query: 340 VVIKSPPVDR-DQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
++ R + + P V+V PTREL Q EA + + VV GG
Sbjct: 243 LMADGVAASRFSEIQEPEAVIV-APTRELINQIYQEARKF-SFGTCVRPVVVYGGVNTGY 300
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ + ++ C +L TPGRL D I G L V+ LVLDEAD +LDMGF D+ ++
Sbjct: 301 QMREIEKG-CNVLCGTPGRLLDMIGR--G-KVGLSKVRHLVLDEADRMLDMGFEPDMRRL 356
Query: 459 IAA--VP--KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL- 513
+ + +P ++RQTL+FSAT PE+++++ LK D+ F+ G T V Q L
Sbjct: 357 VGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACT--DVEQTFLQ 414
Query: 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
V + LL LLR ++ + +VF T +A L + K+ IH + Q
Sbjct: 415 VTKFNKREQLLD-LLRTIGSE----RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQ 469
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
R + +FR K +LV + V++RG+D PDV V+ LP+ + Y+HR+GRTGR G
Sbjct: 470 REREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGN 529
Query: 634 EGQGILLLAP 643
G+ + P
Sbjct: 530 TGRAVSFYDP 539
Score = 46 (21.3 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 88 RGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKRFSKDDDVSDFRKGSGRENRG 145
RG R G RG D+ EL+ D + F R + FR G G RG
Sbjct: 55 RGGRGGRGRGFGR--SDQDELNGGGGDSE-NGFRGRGRGGR----GGFRSGGGERGRG 105
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 134/376 (35%), Positives = 196/376 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +S ++ I+ AGY + T VQ+ +P +L+G+D++ A+TGTGKT F LP +E
Sbjct: 3 FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 341 VIKSPPVDRDQRRPPIL--VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
+ + D+ QR P VLV+ PTRELA Q E+ L + GG +
Sbjct: 63 LFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVH-ESFKLYARDLKFVSACIFGGVGMNP 121
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFAT-RLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ + M +LVA PGRL D AG + L V++LVLDEAD +LDMGF D++K
Sbjct: 122 QVQAMSRG-VDVLVACPGRLLD----LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK 176
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
++A +P +RQ LLFSAT ++ + L T + E EQ R L A
Sbjct: 177 VLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQ-RVFRLAAN- 234
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
H LL + +VLVF T +A+ L + L IH K Q+ RT
Sbjct: 235 --H---KRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNART 289
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
+ +F+ I+V +D++ARG+D + V+ LP+ E Y+HR+GRTGR G+ G+
Sbjct: 290 KALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEA 349
Query: 638 ILLLAPWEEFFLSTIK 653
I L+AP EE L +I+
Sbjct: 350 ISLVAPDEEKLLKSIE 365
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 132/391 (33%), Positives = 203/391 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ + AG+ T +Q + P+ ++G+D++A AKTG+GKT+ +L+P + + D
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF---LHLQRIRND 226
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPS--IGVQVVIGGTRLALEQKRMQANPC 408
R P +LV+ PTRELATQ EA +K+ S I + GG + + ++
Sbjct: 227 SRMGPT-ILVLSPTRELATQIQEEA---VKFGRSSRISCTCLYGGAPKGPQLRDLERG-A 281
Query: 409 QILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 468
I+VATPGRL D +E L + LVLDEAD +LDMGF I KI+ +P +RQT
Sbjct: 282 DIVVATPGRLNDILEMRR---ISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 469 LLFSATVPEEVRQICHIALKRDHEF-INTVEEGSEETHEQVRQ-MHLVAPLDLHFPLLYV 526
L+++AT P+ VR+I L + I V+E ++ + Q + +VAP++ L +
Sbjct: 339 LMYTATWPKGVRKIAADLLVNPAQVNIGNVDE--LVANKSITQHIEVVAPMEKQRRLEQI 396
Query: 527 LLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFR 584
L + P KV++FC+T RM L L + IH K Q R V ++FR
Sbjct: 397 LRSQE----PGSKVIIFCSTK---RMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFR 449
Query: 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW 644
+ +LV +DV+ARG+D D+ V+ P+ E Y+HR+GRTGR G GQ
Sbjct: 450 SGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQ 509
Query: 645 EEFFLSTIKDLPILKAPVPSVDPDTKKKVER 675
+ S + + IL+ V P ++ R
Sbjct: 510 DSKHASDL--IKILEGANQRVPPQIREMATR 538
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 492 (178.3 bits), Expect = 7.3e-47, P = 7.3e-47
Identities = 130/386 (33%), Positives = 203/386 (52%)
Query: 294 IKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR 353
+ AG+ + +Q + P+ ++ +D++A AKTG+GKT+ +L+P + + + D R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQR---IHNDSRM 300
Query: 354 PPILVLVICPTRELATQAATEASTLLKYHPS--IGVQVVIGGTRLALEQKRMQANPCQIL 411
P +LV+ PTRELATQ EA LK+ S I + GG + K ++ I+
Sbjct: 301 GPT-ILVLSPTRELATQIQVEA---LKFGKSSKISCACLYGGAPKGPQLKEIERG-VDIV 355
Query: 412 VATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471
VATPGRL D +E L V LVLDEAD +LDMGF I KI+ VP +RQTL++
Sbjct: 356 VATPGRLNDILEMKR---ISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMY 412
Query: 472 SATVPEEVRQICHIALKRDHEF-INTVEEGSEETHEQVRQ-MHLVAPLDLHFPLLYVLLR 529
+AT P+EVR+I L + I V+E ++ + Q + ++AP++ H L +L
Sbjct: 413 TATWPKEVRKIAADLLVNPAQVNIGNVDE--LVANKSITQTIEVLAPMEKHSRLEQILRS 470
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+ P K+++FC+T + +A L IH K Q+ R V ++FR +
Sbjct: 471 QE----PGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTP 525
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL 649
+LV +DV+ARG+D D+ +V+ P+ E Y+HR+GRTGR G G +
Sbjct: 526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHA 585
Query: 650 STIKDLPILKAPVPSVDPDTKKKVER 675
S + + IL+ V P ++ R
Sbjct: 586 SDL--IKILEGANQKVPPQVREMATR 609
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 126/358 (35%), Positives = 189/358 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F Q + + +K + + GY+ T +Q +P +L GK+VLA A+TGTGKT +F+LP +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+P + R +R + +++ PTRELA Q + KY P + + GG A ++
Sbjct: 63 FADAPKI-RPKR---VRSIILTPTRELALQVEQNINQYAKYLP-LTAMAMYGGVDAAPQK 117
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
KR+ +LVATPGRL D A R V VLVLDEAD +LDMGF +DI II
Sbjct: 118 KRL-IEGVDLLVATPGRLLDMYTQRA---IRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+P+QRQ LLFSAT+ ++V+ + A+ E I + + T Q+ Q D
Sbjct: 174 KLPEQRQNLLFSATLSKQVKALAKTAIPDAIE-IEISRKNAAST--QIDQWLTTVDKDRK 230
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580
LL L++E N + L+F T + L + + HS + Q+ R ++
Sbjct: 231 SALLSHLIKE----NNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLL 286
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+F+ K LV + V +RG+D + VI LP + + YIHR+GRTGR G +G+ I
Sbjct: 287 IDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAI 344
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 126/358 (35%), Positives = 189/358 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F Q + + +K + + GY+ T +Q +P +L GK+VLA A+TGTGKT +F+LP +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+P + R +R + +++ PTRELA Q + KY P + + GG A ++
Sbjct: 63 FADAPKI-RPKR---VRSIILTPTRELALQVEQNINQYAKYLP-LTAMAMYGGVDAAPQK 117
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
KR+ +LVATPGRL D A R V VLVLDEAD +LDMGF +DI II
Sbjct: 118 KRL-IEGVDLLVATPGRLLDMYTQRA---IRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+P+QRQ LLFSAT+ ++V+ + A+ E I + + T Q+ Q D
Sbjct: 174 KLPEQRQNLLFSATLSKQVKALAKTAIPDAIE-IEISRKNAAST--QIDQWLTTVDKDRK 230
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580
LL L++E N + L+F T + L + + HS + Q+ R ++
Sbjct: 231 SALLSHLIKE----NNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLL 286
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+F+ K LV + V +RG+D + VI LP + + YIHR+GRTGR G +G+ I
Sbjct: 287 IDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAI 344
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 493 (178.6 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 139/440 (31%), Positives = 233/440 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F Q ++S ++ I GY T +Q +T+PV L G+D+ A TGTGKT A++LP++E
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++ P ++ R VLV+ PTREL Q L ++ +I V + IGG + ++
Sbjct: 219 LLYRPLNNKAITR----VLVLVPTRELGAQVYQVTKQLCQF-TTIDVGLAIGGLDVKAQE 273
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++ NP I++ATPGRL DHI+NT F L ++VL+LDEAD +LD F + +++II
Sbjct: 274 AVLRQNP-DIVIATPGRLIDHIKNTPSFT--LDSIEVLILDEADRMLDEYFAEQMKEIIN 330
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHE-FINTVEEGSEETHEQVRQMHLVAPLDL 519
+ K RQT+LFSAT+ E+V+ + ++L + + F+N ++ + ++ ++ D
Sbjct: 331 SCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDR 390
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
P+L L+ D+ +VF T + LLG L + E+H Q R
Sbjct: 391 E-PILASLICRTFHDH----CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLES 445
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
+F++ + +L+ +DV+ARG+D V VI +P E YIHR+GRT R G+ G +
Sbjct: 446 LKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVS 505
Query: 640 LLAPWEEFFLSTI-KDLP-ILKAPVPSVDPDTKKKVERALSHVE--MKNKEAAYQAWLGY 695
L E + I K+ +K + + P+ +K L+ +E ++N QA
Sbjct: 506 LAGEKERKIVKDIIKNAESTIKNRI--IPPEIIEKYRNKLTSLEPEIQNILDEEQAERQL 563
Query: 696 YNSNKKVGRDKYKLVELANE 715
+ +++ + + KL+ NE
Sbjct: 564 AKTEQQLSKTERKLLGQTNE 583
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 140/400 (35%), Positives = 208/400 (52%)
Query: 298 GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357
G+ T +Q AT P+L G+DV+ A+TG+GKT+AF LP ++ V+ + R P L
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCR-P--L 148
Query: 358 VLVICPTRELATQAATEASTLLKYHPSIGVQV--VIGGTRLALEQKRMQANPCQILVATP 415
+VI PTRELA Q + L+K+ + +QV + GG + +++R ++VATP
Sbjct: 149 AVVISPTRELAMQIYDQ---LVKFAEKVDIQVACIFGGVKK--DEQREALKSAAVVVATP 203
Query: 416 GRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVP-KQRQTLLFSAT 474
GRL+D ++N L VK LVLDEAD +LD GF +DI+ II+ +P +RQT++F+AT
Sbjct: 204 GRLKD-LQNDGSLD--LGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTAT 260
Query: 475 VPEEVRQICHIALKRDHEF-INTVEEGSEETHEQVRQM-HLVAPLDLHFPLLYVLLREHV 532
P VR + + I + +++Q+ +V P + L+ +L R H
Sbjct: 261 WPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNR-HQ 319
Query: 533 ADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILV 592
P+ KVL FC V LL V IH Q R R + F+ +LV
Sbjct: 320 RGTPD-KVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLV 378
Query: 593 TSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652
+DV+ARG+D P V LV+ V P E Y+HR+GRTGR G +G I L ++ +
Sbjct: 379 ATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGAL 438
Query: 653 KDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
+ +LKA V P+ K S V+ K +A Y A+
Sbjct: 439 --INVLKAANQEV-PEALLKFG---STVKKKQHDA-YGAF 471
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 131/420 (31%), Positives = 224/420 (53%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F + + + I+ G+ + T +Q+ +P + G D++A +KTG+GKT+AF++P+++
Sbjct: 2 QFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+ K+ + + R P +++L PTRELA Q ++ L + +++GG +
Sbjct: 62 RLSKNRALSK--RDPRVVILT--PTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
K +Q P + +VATPGRL DH+ T G L G+++L+LDEAD +LD+GF K++ +I
Sbjct: 117 VKVLQKEP-EFIVATPGRLADHL--TQGHF-HLNGLELLILDEADRMLDLGFSKELTQIN 172
Query: 460 -AAVPKQRQTLLFSATVPE-EVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
AA ++RQTLLFSAT+ +V + L + + G E + ++ +L L
Sbjct: 173 KAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRI--AINAGHSEHVDIAKRFYLADNL 230
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
LL L V + + ++++F T T +A LL E LN + Q R
Sbjct: 231 TQKEALLQHFL---VTEKSQ-QIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRN 286
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
++ + F K + ILVT+D+++RG+D +V+ VI +P E+++HR+GRTGR G +G
Sbjct: 287 QIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDA 346
Query: 638 ILLLAP--W------EEFFLSTIKDLPI--LKAPVPSVDPDTKKKVERALSHVEMKNKEA 687
I L+ P W E F I + +K + P +K V+ +S K+K+A
Sbjct: 347 ISLVGPNDWLSLKNVEAFLQQKISFTKVEGIKVKFKGLKPKKEKAVKAKVSVA--KDKKA 404
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 118/360 (32%), Positives = 196/360 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F Q +S + ++ + GY+K T +Q +PV+L+G+D++A A+TGTGKT +F+LP +E
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + + QR+ + L++ PTRELA Q A + +Y G++ V GG
Sbjct: 63 LRQG----QTQRKKRVRALILVPTRELAMQVAEKVE---QYGKDTGLKSLAVFGGVDEQA 115
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+++R+ + +LVATPGRL D A + ++++VLDEAD +LDMGF + I KI
Sbjct: 116 QKQRL-IDGVDVLVATPGRLMDLYGQRAVYFEE---IEMVVLDEADRMLDMGFIESINKI 171
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
I +P + Q LLFSAT+ +VR++ A++ HE + S+ + Q + D
Sbjct: 172 IDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSN---ISQWLITVDKD 228
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
LL L+ E D + L+F T + L + ++ HS + Q+ R +
Sbjct: 229 TKSALLSHLINEQQWD----QALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQ 284
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ ++F+ K LV + V+ARG+D ++ V+ LP ++Y+HR+GRTGR G+ I
Sbjct: 285 LLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAI 344
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 131/420 (31%), Positives = 224/420 (53%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F + + + I+ G+ + T +Q+ +P + G D++A +KTG+GKT+AF++P+++
Sbjct: 2 QFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+ K+ + + R P +++L PTRELA Q ++ L + +++GG +
Sbjct: 62 RLSKNRALSK--RDPRVVILT--PTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
K +Q P + +VATPGRL DH+ T G L G+++L+LDEAD +LD+GF K++ +I
Sbjct: 117 VKVLQKEP-EFIVATPGRLADHL--TQGHF-HLNGLELLILDEADRMLDLGFSKELTQIN 172
Query: 460 -AAVPKQRQTLLFSATVPE-EVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
AA ++RQTLLFSAT+ +V + L + + G E + ++ +L L
Sbjct: 173 KAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRI--AINAGHSEHVDIAKRFYLADNL 230
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
LL L V + + ++++F T T +A LL E LN + Q R
Sbjct: 231 TQKEALLQHFL---VTEKSQ-QIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRN 286
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
++ + F K + ILVT+D+++RG+D +V+ VI +P E+++HR+GRTGR G +G
Sbjct: 287 QIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDA 346
Query: 638 ILLLAP--W------EEFFLSTIKDLPI--LKAPVPSVDPDTKKKVERALSHVEMKNKEA 687
I L+ P W E F I + +K + P +K V+ +S K+K+A
Sbjct: 347 ISLVGPNDWLSLKNVEAFLQQKISFTKVEGIKVKFKGLKPKKEKAVKAKVSVA--KDKKA 404
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 118/360 (32%), Positives = 196/360 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F Q +S + ++ + GY+K T +Q +PV+L+G+D++A A+TGTGKT +F+LP +E
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ + + QR+ + L++ PTRELA Q A + +Y G++ V GG
Sbjct: 63 LRQG----QTQRKKRVRALILVPTRELAMQVAEKVE---QYGKDTGLKSLAVFGGVDEQA 115
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+++R+ + +LVATPGRL D A + ++++VLDEAD +LDMGF + I KI
Sbjct: 116 QKQRL-IDGVDVLVATPGRLMDLYGQRAVYFEE---IEMVVLDEADRMLDMGFIESINKI 171
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
I +P + Q LLFSAT+ +VR++ A++ HE + S+ + Q + D
Sbjct: 172 IDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSN---ISQWLITVDKD 228
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
LL L+ E D + L+F T + L + ++ HS + Q+ R +
Sbjct: 229 TKSALLSHLINEQQWD----QALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQ 284
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ ++F+ K LV + V+ARG+D ++ V+ LP ++Y+HR+GRTGR G+ I
Sbjct: 285 LLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAI 344
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 139/394 (35%), Positives = 204/394 (51%)
Query: 254 GLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVL 313
G++ +N + + + GK D + F + L L+ IK A + K T VQ+ ++P++
Sbjct: 119 GINFDNYD-DIPVDASGK-DVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIV 176
Query: 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD-------QRRPPILVLVICPTRE 366
G+D++A A+TG+GKT FL P + K+ P + QR+ +++ PTRE
Sbjct: 177 ANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRE 236
Query: 367 LATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTA 426
LATQ EA Y + VV GG+ + + + ++ C +LVATPGRL D +E
Sbjct: 237 LATQIFDEAKKFT-YRSWVKACVVYGGSPIGNQLREIERG-CDLLVATPGRLNDLLER-- 292
Query: 427 GFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA---AVPK-QRQTLLFSATVPEEVRQI 482
G + L VK LVLDEAD +LDMGF I I+ P +RQTL+FSAT P +++ +
Sbjct: 293 GKIS-LANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHL 351
Query: 483 CHIALKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDLHFPLLYVLLREHVADNPEYKVL 541
L D+ F++ GS T E + Q L V D LL +L + + + L
Sbjct: 352 ARDFLS-DYIFLSVGRVGS--TSENITQKVLYVENQDKKSALLDLL-----SASTDGLTL 403
Query: 542 VFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGV 601
+F T + + D L IH + QS R R FR +LV + V+ARG+
Sbjct: 404 IFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGL 463
Query: 602 DYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
D P+VT VI LPSD + Y+HR+GRTGR G G
Sbjct: 464 DIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTG 497
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 495 (179.3 bits), Expect = 2.7e-46, P = 2.7e-46
Identities = 130/385 (33%), Positives = 191/385 (49%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
+ QC +SA ++ I GYEK T +Q +P + G+DV+ AKTG+GKT+AFLLP
Sbjct: 420 WSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRH 479
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ P+ + PI + ++ PTRELA Q E LK +I GG + +Q
Sbjct: 480 IKDQRPLKTGEG--PIAI-IMTPTRELAVQIFRECKPFLKLL-NIRACCAYGGAPIK-DQ 534
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+I+V TPGR+ D + AG T L LVLDEAD + D+GF + +II
Sbjct: 535 IADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIIN 594
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ RQT+LFSAT P + + LK+ E TV G +V Q+ V P +
Sbjct: 595 NIRPDRQTVLFSATFPRAMEALARKVLKKPVEI--TVG-GRSVVASEVEQIVEVRPEESK 651
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTA-MVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
F L LL E + + + LVF +++DL+ + IH K Q R
Sbjct: 652 FSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLM-KRGYTSNSIHGGKDQHDRDST 710
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
+++ +L+ + V ARG+D + LV+ P+ E Y+HR+GRTGR G G +
Sbjct: 711 ISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVT 770
Query: 640 LLAPWEEFFLSTI-KDLPILKAPVP 663
+ P +E + I K L + K PVP
Sbjct: 771 FITPEQEKYAVDIAKALKMSKQPVP 795
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 486 (176.1 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 127/358 (35%), Positives = 193/358 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F+ + L+ + AG+ T +Q T P+ L+ +D++A AKTG+GKT+ +L+P+ +
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF-I 495
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS--IGVQVVIGGTRLAL 398
+++ D R P VL++ PTRELATQ EA L++ S I + GG
Sbjct: 496 LLRH--CRNDSRNGPT-VLILAPTRELATQIQDEA---LRFGRSSRISCTCLYGGAPKGP 549
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ K ++ I+VATPGRL D +E V +LVLDEAD +LDMGF I KI
Sbjct: 550 QLKELERG-ADIVVATPGRLNDILEMKM---IDFQQVSLLVLDEADRMLDMGFEPQIRKI 605
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEF-INTVEEGSEETHEQVRQMHLVAPL 517
+ +P +RQTL+++AT P+EVR+I L + I V+E + ++ + Q V P
Sbjct: 606 VNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELA--ANKAITQYVEVVPQ 663
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
L +LR + KV++FC+T + +A +G IH K Q R
Sbjct: 664 MEKERRLEQILRSQERGS---KVIIFCSTKRLCDHLARSVGR-HFGAVVIHGDKTQGERD 719
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
V ++FR K +L+ +DV+ARG+D D+ +VI P+ E Y+HR+GRTGR G G
Sbjct: 720 WVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATG 777
Score = 37 (18.1 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 675 RALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIPKLV 732
R+ S +++ + G +N ++ R + E + R G D P + +V
Sbjct: 987 RSRSWSRSRSRSPRHSRDRGGHNRSRSYSRSPSPVYERRDRAPRVSGFDIKPPVESVV 1044
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 132/366 (36%), Positives = 202/366 (55%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F++ + + K I GY K+T VQ+ ++PV+ G+D+++ A+TG+GKT AFLLP ++
Sbjct: 169 FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDR 228
Query: 341 VIKSP-PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
++K Q++ +++ PTREL Q EA + Y I V+ GGT+
Sbjct: 229 MMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFV-YGTCIRPVVIYGGTQTGHS 287
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+++ C IL ATPGRL D IE G + L+ VK LVLDEAD +LDMGF D++K+I
Sbjct: 288 IRQIMQG-CNILCATPGRLLDIIEK--GKIS-LVEVKYLVLDEADRMLDMGFGLDMKKLI 343
Query: 460 A--AVPKQ--RQTLLFSATVPEEVRQICHIALKRDHEFI---NTVEEGSEETHEQVRQMH 512
+ +P + RQTL+FSAT PEEV+++ LK D+ F+ NT S+ + + Q+
Sbjct: 344 SYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSD-VQQNILQVP 402
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
++ D L+ +L + E + +VF T +A L + L IH +
Sbjct: 403 RLSKRD---KLIEILQ----STGGE-RTMVFVDTKKKADYLAAFLCQENLPSTSIHGDRE 454
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R +FR K ILV + V++RG+D +V VI LP+ E Y+HR+GRTGR G
Sbjct: 455 QREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCG 514
Query: 633 KEGQGI 638
G+ +
Sbjct: 515 NTGKAV 520
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 132/366 (36%), Positives = 202/366 (55%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F++ + + K I GY K+T VQ+ ++PV+ G+D+++ A+TG+GKT AFLLP ++
Sbjct: 169 FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDR 228
Query: 341 VIKSP-PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
++K Q++ +++ PTREL Q EA + Y I V+ GGT+
Sbjct: 229 MMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFV-YGTCIRPVVIYGGTQTGHS 287
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+++ C IL ATPGRL D IE G + L+ VK LVLDEAD +LDMGF D++K+I
Sbjct: 288 IRQIMQG-CNILCATPGRLLDIIEK--GKIS-LVEVKYLVLDEADRMLDMGFGLDMKKLI 343
Query: 460 A--AVPKQ--RQTLLFSATVPEEVRQICHIALKRDHEFI---NTVEEGSEETHEQVRQMH 512
+ +P + RQTL+FSAT PEEV+++ LK D+ F+ NT S+ + + Q+
Sbjct: 344 SYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSD-VQQNILQVP 402
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
++ D L+ +L + E + +VF T +A L + L IH +
Sbjct: 403 RLSKRD---KLIEILQ----STGGE-RTMVFVDTKKKADYLAAFLCQENLPSTSIHGDRE 454
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R +FR K ILV + V++RG+D +V VI LP+ E Y+HR+GRTGR G
Sbjct: 455 QREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCG 514
Query: 633 KEGQGI 638
G+ +
Sbjct: 515 NTGKAV 520
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 138/372 (37%), Positives = 196/372 (52%)
Query: 272 HDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTV 331
HD + FD+ L +K G++K T +Q P+ L G+D++ A TG+GKT+
Sbjct: 106 HDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTL 165
Query: 332 AFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKY-HPS-IGVQV 389
++ LP I V I + P+ P +VLV+ PTRELA Q TE S K+ H S I
Sbjct: 166 SYCLPGI-VHINAQPLLAPGDGP--IVLVLAPTRELAVQIQTECS---KFGHSSRIRNTC 219
Query: 390 VIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM 449
V GG + +Q R + +I++ATPGRL D +E G T L V LVLDEAD +LDM
Sbjct: 220 VYGGVPKS-QQIRDLSRGSEIVIATPGRLIDMLE--IG-KTNLKRVTYLVLDEADRMLDM 275
Query: 450 GFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEE---THE 506
GF I KI+ + RQTL++SAT P+EV+Q+ L + V+ GS E +H
Sbjct: 276 GFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQ----VQVGSLELSASHN 331
Query: 507 QVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE 566
+ + +V+ + L L E + + EYK L+F +T + + L E
Sbjct: 332 ITQIVEVVSDFEKRDRLNKYL--ETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALA 389
Query: 567 IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLG 626
IH K Q R V EFR + I+V +DV+ARG+D + VI +P + E Y+HR+G
Sbjct: 390 IHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIG 449
Query: 627 RTGRKGKEGQGI 638
RTGR G G I
Sbjct: 450 RTGRAGATGTAI 461
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 126/391 (32%), Positives = 205/391 (52%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F ++ ++G+ DAG+ T +QE TLP+ L GKDV +A+TGTGKT AFL+
Sbjct: 2 KFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFT 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+++S +RR P +++ PTREL Q +A +L H +Q + GG ++
Sbjct: 62 KLLRSGR--GGERRHP-RAIILAPTRELVVQIEKDAQ-VLGAHCGFTIQAIYGGVDY-MK 116
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
QK ++V TPGRL D+++ ++ L +++LV+DEAD + DMGF D+ I+
Sbjct: 117 QKNALKEGADVVVGTPGRLIDYLKQKV-YS--LKEIEMLVIDEADRMFDMGFIADLRFIL 173
Query: 460 AAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
+P +RQ L+FSAT+ + V ++ + + + T E+ + E EQV ++ V
Sbjct: 174 RRLPPYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQV--LYHVGRK 231
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
+ FPLL LLR+ + + ++F T + + L R I Q R
Sbjct: 232 E-KFPLLLGLLRKEGME----RTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRL 286
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
++ ++F+ K I++ +DV++RG+ V+ VI LP D E Y+HR+GRT R G EG+
Sbjct: 287 KILEDFKSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKA 346
Query: 638 ILLLAPWEEFFLSTIKDLPILKAPVPSVDPD 668
I + F L I + K PV + D
Sbjct: 347 ISMADEDGAFHLEAIHEYIKDKIPVEWAEDD 377
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 127/439 (28%), Positives = 227/439 (51%)
Query: 276 MSESRFDQCS--ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF 333
++E+RF +S ++ + + +E T VQ AT+P+L KDV A TG+GKT+AF
Sbjct: 11 LTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAF 70
Query: 334 LLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
++P +E++ +S + ++ ++I PTREL+TQ A + ++ +++GG
Sbjct: 71 VVPLVEILRRSTSFPPKPHQ--VMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGG 128
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ + K ++ C +L+ TPGRL D +E R +++L+LDEAD LL+MGF++
Sbjct: 129 REVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFR--NLEILILDEADRLLEMGFQR 186
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513
+ II+ +PKQR+T LFSAT E V ++ L R+ + + E+ +Q+
Sbjct: 187 QVNYIISRLPKQRRTGLFSATQTEGVEELAKAGL-RNPVRVEVRAKSKSESSQQLTNSKT 245
Query: 514 VAPLDLHFPLLYV-----LLREHVADNPEYKVLVF---CTTAMVTRMVADLLGELK-LNV 564
+ L L + L + + N + K++VF C + +V + LK +++
Sbjct: 246 PSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISL 305
Query: 565 REIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHR 624
IH Q+ R + F K+ L+ +DV+ARG+D P + V+Q P D + HR
Sbjct: 306 IPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHR 365
Query: 625 LGRTGRKGKEGQGILLLAPWEEFFLS--TIKDLPILKAPVPSVDPDTKKKVERALSHVEM 682
GRT R G++G+ I+ L P EE ++ I+ +P+ + S D + R+ + +
Sbjct: 366 AGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKC-SEDASDVIPIIRSAAMKDR 424
Query: 683 KNKEAAYQAWLGYYNSNKK 701
E +A++ + + K+
Sbjct: 425 AVMEKGLKAFVSFVRAYKE 443
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 489 (177.2 bits), Expect = 4.0e-46, P = 4.0e-46
Identities = 136/408 (33%), Positives = 210/408 (51%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 185 EGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 244
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE + DR + R P VLV+ PTRELA Q + + S + K + V GGT
Sbjct: 245 IEK-LHGELQDRKRGRAP-QVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYG 299
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +RM+ N ILV TPGR++DHI+N T+L K +VLDE D +LDMGF +E+
Sbjct: 300 GQFERMR-NGIDILVGTPGRIKDHIQNGKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 355
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I++ K+ QTLLFSAT P V + +K +E ++ + + +++T V +
Sbjct: 356 ILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLA 415
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ ++ ++R V + + ++FC T + ++ +K + + +H P
Sbjct: 416 IKCHWTQRAAVIGDVIR--VYSGHQGRTIIFCETKKEAQELSQN-SAIKQDAQSLHGDIP 472
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R FR +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTGR G
Sbjct: 473 QKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAG 532
Query: 633 KEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVERAL 677
+ G I EE+ L ++ + + VPS K + A+
Sbjct: 533 RTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 131/376 (34%), Positives = 198/376 (52%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+ F +++ L+ IK +GY + T VQ+ ++P++ G+D++A A+TG+GKT FL P +
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 339 EVVI-KSP---PVDRDQ------RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ 388
+ K P PVD+D R+ L++ PTREL Q E+ Y +
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPC 287
Query: 389 VVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD 448
V GG + + +++ C +L ATPGRL D I+ G + L +K LVLDEAD +LD
Sbjct: 288 AVYGGADIRAQIRQIDQG-CDLLSATPGRLVDLIDR--GRIS-LANIKFLVLDEADRMLD 343
Query: 449 MGFRKDIEKIIAAVP----KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEET 504
MGF I I+ ++RQTL+FSAT P +++ + LK D+ F++ GS T
Sbjct: 344 MGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLK-DYVFLSVGRVGS--T 400
Query: 505 HEQVRQ--MHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKL 562
E + Q +H V + LL +L H PE L+F T + + D L
Sbjct: 401 SENITQKVVH-VEDSEKRSYLLDIL---HTLP-PEGLTLIFVETKRMADTLTDYLLNSNF 455
Query: 563 NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYI 622
IH + Q R R + FR + I+V + V++RG+D P+VT VI LP+D + Y+
Sbjct: 456 PATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYV 515
Query: 623 HRLGRTGRKGKEGQGI 638
HR+GRTGR G GQ +
Sbjct: 516 HRIGRTGRAGNTGQAV 531
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 142/408 (34%), Positives = 215/408 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD S+ + S++ + + + K T +Q P LL GKDV+ A+TG+GKT AF +P+I
Sbjct: 116 FDYLSLDS-SIQA-EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISH 173
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQV--VIGGTRLAL 398
++ DQ++ I VLVI PTRELA+Q L+ +G+Q V GG +
Sbjct: 174 LMN------DQKKRGIQVLVISPTRELASQIY---DNLIVLTDKVGMQCCCVYGG--VPK 222
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+++R+Q Q++VATPGRL D ++ G + L V LVLDEAD +L+ GF +DI+ I
Sbjct: 223 DEQRIQLKKSQVVVATPGRLLDLLQE--G-SVDLSQVNYLVLDEADRMLEKGFEEDIKNI 279
Query: 459 IAAVP-KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQM-HLVAP 516
I +RQTL+F+AT P+EVR++ + + ++ ++++ Q+ +V P
Sbjct: 280 IRETDASKRQTLMFTATWPKEVRELASTFMNNPIK-VSIGNTDQLTANKRITQIVEVVDP 338
Query: 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN---VREIHSRKPQ 573
LL +L + H KVL+F A+ + A + LK N V IH Q
Sbjct: 339 RGKERKLLELLKKYHSGPKKNEKVLIF---ALYKKEAARVERNLKYNGYNVAAIHGDLSQ 395
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
RT+ +EF+ K +L+ +DV+ARG+D P+V VI + P E Y+HR+GRTGR G+
Sbjct: 396 QQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQ 455
Query: 634 EGQGILLLAPWEEFFLSTIKD-LPILKAPVPS----VDPDTKKKVERA 676
G L E+ + + L PVP TKKK A
Sbjct: 456 TGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSA 503
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 132/345 (38%), Positives = 182/345 (52%)
Query: 298 GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357
G+ T++Q + P++L G D++ A TG+GKT+AFLLP++ +I P P L
Sbjct: 129 GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATP--L 186
Query: 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGR 417
VLV+ PTRELA Q T ++ SI GG ++Q R+ N I++ TPGR
Sbjct: 187 VLVMAPTRELAQQIEEVCKTSIR-GTSIRQLCAYGGLG-KIDQSRILRNGVDIVIGTPGR 244
Query: 418 LRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477
L D + L V+ LVLDEAD +LDMGF IE +I +PK+RQTL+FSAT P+
Sbjct: 245 LNDLLRKH-----HLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPK 299
Query: 478 EVRQICHIALKRDHEFINTVEEGSEETHEQVR-QMHLVAPLDLHF----PLLYVLLREHV 532
EV+ + LK + TV GS+E + H+V DL L+Y + + +
Sbjct: 300 EVKLLASKFLKDPIKI--TV--GSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKIL 355
Query: 533 ADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREI--HSRKPQSYRTRVSDEFRKSKGLI 590
+P V+VFC L K NV+ I HS K Q R FR + I
Sbjct: 356 TADPTNTVIVFCNEKYKCDDFQHYLSTQK-NVKSIVLHSGKDQRMRESGLKLFRDHRIRI 414
Query: 591 LVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
L+ +DV+ARG+D P V V LP + E Y+HR+GRTGR GK G
Sbjct: 415 LIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTG 459
>POMBASE|SPBC24C6.02 [details] [associations]
symbol:SPBC24C6.02 "ATP-dependent RNA helicase Spb4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC24C6.02 GO:GO:0005524 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
OMA:CACVEYW OrthoDB:EOG46MFT3 PIR:T39966 RefSeq:NP_595956.1
ProteinModelPortal:O74764 STRING:O74764 EnsemblFungi:SPBC24C6.02.1
GeneID:2540598 KEGG:spo:SPBC24C6.02 NextBio:20801723 Uniprot:O74764
Length = 606
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 139/426 (32%), Positives = 225/426 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +I + G++KMT VQ +P+ LK KD++ +A TG+GKT+A+LLP +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP-SI--GVQVV----IGG 393
V + RD + L++ PTRELATQ LL Y P S+ G ++V IGG
Sbjct: 63 VTR-----RDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGG 117
Query: 394 TRLALEQKRM--QANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGF 451
+ NP +++ TPGRL + + + + +++L+LDEAD L+DMGF
Sbjct: 118 KGTLTNDLASFREKNP-SVVIGTPGRLNEMLSHISS-----KHLEILILDEADTLIDMGF 171
Query: 452 RKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN-TVEEGSEETHEQVRQ 510
++ ++ II+ +PKQR+T LFSAT+ + V IA R+ ++ TV +T R
Sbjct: 172 QRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDT----RT 227
Query: 511 MHLVAPLDLHFPLLY-VLLREHVADNPEY-KVLVFCTTAMVTRMVADLLGELKL--NVRE 566
+A L P +Y V H+ EY K +VF ++ L KL +
Sbjct: 228 PSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVA 287
Query: 567 IHSRKPQSYRTRVSDEFRKS-KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRL 625
+H ++ QS R+R ++F+KS K +L T+D+++RG+D P+V V+Q+ P D + + HR
Sbjct: 288 LHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRC 347
Query: 626 GRTGRKGKEGQGILLLAPW-EEFF--LSTIKDLPILK--APVPSVDPDTKKKVERALSHV 680
GR GR G+ G I+LL EE + L ++ +PI + P+ ++D K + L +
Sbjct: 348 GRAGRAGRAGVAIVLLNDGREEEYEELLRVRKVPITRIDTPIEALDLSRLKVLTHELRKI 407
Query: 681 EMKNKE 686
K+++
Sbjct: 408 VSKDRD 413
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 136/443 (30%), Positives = 226/443 (51%)
Query: 267 SSPGKHDSFMSESRFDQCS--ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAK 324
SSP K + + RF + +S ++ + +G+E T VQ T+P L KDV+ A
Sbjct: 3 SSPPKTIT-KALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAA 61
Query: 325 TGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS 384
TG+GKT+AFLLP IE++ +S + ++ ++I PTREL+ Q A + P+
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPPKPHQ--VMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 385 IGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444
+ +++GG + + ++ +L+ TPGRL D ++ R +++L+LDEAD
Sbjct: 120 VNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFR--NLEILILDEAD 177
Query: 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEET 504
LLDMGF+K + II+ +PKQR+T LFSAT + V + L+ E I+ E S+ T
Sbjct: 178 RLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSK-T 236
Query: 505 HEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVF-CTTAMVTR--MVADLLGELK 561
+ +L D L LL E N K++VF T A V +V + LK
Sbjct: 237 SSGLYCEYLKCEADQKSSQLVHLLIE----NKNKKLVVFFMTCACVDYWGLVLSKIPTLK 292
Query: 562 -LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQ 620
++ H + Q R F ++ +L+ +DV+ARG+D P + V+Q P D +
Sbjct: 293 SISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDV 352
Query: 621 YIHRLGRTGRKGKEGQGILLLAPWEEFFLS--TIKDLPILKAPVPSVDPDTKKKVERALS 678
+IHR+GRT R ++G+ I+ L P E ++ I+ +P+ + D + R+L+
Sbjct: 353 FIHRVGRTARMERQGRAIVFLMPKETDYVEFMRIRRVPLQERKCSENASDVIPII-RSLA 411
Query: 679 HVEMKNKEAAYQAWLGYYNSNKK 701
+ E QA++ + + K+
Sbjct: 412 IKDRAVLEKGLQAFVSFVRAYKE 434
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 455 (165.2 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 123/355 (34%), Positives = 182/355 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F++ LK +K G+E T +Q+ P+ + G+D++ + TG+GKT+++ LP+I V
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI-V 182
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
I + P+ P +VLV+ PTRELA Q E + K I V GG Q
Sbjct: 183 HINAQPLLSPGDGP--IVLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGGVPRG-PQ 238
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
R +I +ATPGRL D +++ T L V LVLDEAD +LDMGF I KI+
Sbjct: 239 IRDLIRGVEICIATPGRLLDMLDSNK---TNLRRVTYLVLDEADRMLDMGFEPQIRKIVD 295
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ RQT++FSAT P+EV+++ L D+ + +H + + +V D
Sbjct: 296 QIRPDRQTVMFSATWPKEVQRLARDYLN-DYIQVTVGSLDLAASHNIKQIVEVVDNADKR 354
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580
L + E V + + KVL+F T V + L + IH K Q R V
Sbjct: 355 ARLGKDI--EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVL 412
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
+EFR K I+V +DV++RG+D +T V P + E Y+HR+GRTGR G +G
Sbjct: 413 NEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKG 467
Score = 42 (19.8 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 77 FRPAASSEFGRRGSRAG--EIRG-SKNLIDDEAELSDWVSDLRTDSF--HSNKRFSKDDD 131
F AS + +RG E G NL+ + + ++ + + D + H N R D +
Sbjct: 42 FNDGASYGYDQRGQGRNFYESDGPGANLVKKDWK-NETLIPFQKDFYKEHENVRNRSDAE 100
Query: 132 VSDFRK 137
V+++RK
Sbjct: 101 VTEYRK 106
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 138/430 (32%), Positives = 222/430 (51%)
Query: 262 MSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLA 321
M++ SP +S+ F + ++A K + + T VQ+ +P +L G+D+LA
Sbjct: 1 MTIPKLSPSP-ESYPESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLA 58
Query: 322 KAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI---LVLVICPTRELATQAATEASTL 378
++TG+GKT AF LP ++++ + V + P L LV+ PTRELA Q + L
Sbjct: 59 LSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHAL 118
Query: 379 ---LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435
L + +Q++ GG L + + A P Q++VATPGRL D + L +
Sbjct: 119 ASQLSTSAPLNIQLLCGGVALEQQLADLSAKP-QLVVATPGRLLDLCTQSH---ISLDAI 174
Query: 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
K LVLDEAD LL+MGF D++K++A +PK++QTLLFSAT+PE + + L D +
Sbjct: 175 KHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVE 234
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
+ E Q++LV L LL+++ P+ VLVF + +A
Sbjct: 235 ASTRNAV-VGEIEEQLYLVNK-GSKAQALIALLKQY--QWPQ--VLVFISARDDADAIAK 288
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
L + +N +H K Q+ R++ +F+ + +LV +D+ ARG+ + +VI + LP
Sbjct: 289 RLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLP 348
Query: 616 SDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSV-D-PDTKKKV 673
+ Y+HR+GRT R G +G I L+ E L+ I++L P+ + D P T K
Sbjct: 349 TSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPS 408
Query: 674 ERALSHVEMK 683
E+ + E K
Sbjct: 409 EKIIDGAENK 418
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 138/430 (32%), Positives = 222/430 (51%)
Query: 262 MSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLA 321
M++ SP +S+ F + ++A K + + T VQ+ +P +L G+D+LA
Sbjct: 1 MTIPKLSPSP-ESYPESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLA 58
Query: 322 KAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI---LVLVICPTRELATQAATEASTL 378
++TG+GKT AF LP ++++ + V + P L LV+ PTRELA Q + L
Sbjct: 59 LSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHAL 118
Query: 379 ---LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435
L + +Q++ GG L + + A P Q++VATPGRL D + L +
Sbjct: 119 ASQLSTSAPLNIQLLCGGVALEQQLADLSAKP-QLVVATPGRLLDLCTQSH---ISLDAI 174
Query: 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
K LVLDEAD LL+MGF D++K++A +PK++QTLLFSAT+PE + + L D +
Sbjct: 175 KHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVE 234
Query: 496 TVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555
+ E Q++LV L LL+++ P+ VLVF + +A
Sbjct: 235 ASTRNAV-VGEIEEQLYLVNK-GSKAQALIALLKQY--QWPQ--VLVFISARDDADAIAK 288
Query: 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP 615
L + +N +H K Q+ R++ +F+ + +LV +D+ ARG+ + +VI + LP
Sbjct: 289 RLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLP 348
Query: 616 SDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSV-D-PDTKKKV 673
+ Y+HR+GRT R G +G I L+ E L+ I++L P+ + D P T K
Sbjct: 349 TSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPS 408
Query: 674 ERALSHVEMK 683
E+ + E K
Sbjct: 409 EKIIDGAENK 418
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 129/356 (36%), Positives = 188/356 (52%)
Query: 288 ALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPV 347
AL+L I+ Y K T VQ +P+LL+G+D++A A+TG+GKT AF P I ++K V
Sbjct: 169 ALNLN-IRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHV 227
Query: 348 DRDQRRPPI--LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQA 405
R + + L +++ PTRELA+Q EA Y + V V GGT + + + ++
Sbjct: 228 QRPRGSRTVYPLAVILSPTRELASQIHDEAKKF-SYQTGVKVVVAYGGTPINQQLRELER 286
Query: 406 NPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV--P 463
ILVATPGRL D +E + ++ L LDEAD +LDMGF I KI+ + P
Sbjct: 287 G-VDILVATPGRLNDLLERAR---VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMP 342
Query: 464 KQ--RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF 521
+ RQTLLFSAT P E++++ L ++ F+ GS T V+++ V D
Sbjct: 343 PRGVRQTLLFSATFPREIQRLAADFLA-NYIFLAVGRVGSS-TDLIVQRVEFVLDSDKRS 400
Query: 522 PLLYVL--LREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
L+ +L RE+ + LVF T + + L IH + Q R
Sbjct: 401 HLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVA 460
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
F+ + ILV +DV+ARG+D P V V+ LP+D + Y+HR+GRTGR GK G
Sbjct: 461 LKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 131/450 (29%), Positives = 223/450 (49%)
Query: 267 SSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTG 326
++P S + F+ ++ +++ K+ G K T VQ +P +L G+DVL A+TG
Sbjct: 46 TNPNPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTG 105
Query: 327 TGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIG 386
+GKT AF LP + + + P + LV+ PTRELA Q A + L ++
Sbjct: 106 SGKTAAFALPILHRLAEDPY--------GVFALVVTPTRELAFQLAEQFKALGSCL-NLR 156
Query: 387 VQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHL 446
V++GG + + + + P I++ TPGR++ +EN K LVLDEAD +
Sbjct: 157 CSVIVGGMDMLTQTMSLVSRP-HIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRV 215
Query: 447 LDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHE 506
LD+GF+ ++ I +PK RQTLLFSAT+ ++ + + + + + EG + T +
Sbjct: 216 LDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHSSNKAYFY--EAYEGLK-TVD 272
Query: 507 QVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE 566
+ Q + D L V + + D ++F +T + ++ +L EL++
Sbjct: 273 TLTQQFIFEDKDAK-ELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIA 331
Query: 567 IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLG 626
+HS QS R +F+ K IL+ +DV++RG+D P V LVI +P D Y+HR+G
Sbjct: 332 MHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVG 391
Query: 627 RTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEM-KNK 685
RT R G+ G + ++ + + I++ + K ++P KK + +L ++ K K
Sbjct: 392 RTARAGRGGLAVSIITETDVKLIHKIEE-EVGK----KMEPYNKKVITDSLEVTKVSKAK 446
Query: 686 EAAYQAWLGYYNSNKKVGRDKYKLVELANE 715
A L +K R K K LA++
Sbjct: 447 RVAMMKMLDNGFEDKVKDRRKLKRKTLADK 476
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 483 (175.1 bits), Expect = 3.7e-45, P = 3.7e-45
Identities = 138/442 (31%), Positives = 230/442 (52%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 186 EGAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 245
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
+E ++ DR + R P VLV+ PTRELA+Q + + S + K + V GGT
Sbjct: 246 VEKLLGELQ-DRKRGRAP-QVLVLAPTRELASQVSRDFSDITK---KLAVACFYGGTPYG 300
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +RM+ N ILV TPGR++DH++N T+L K +VLDE D +LDMGF +E+
Sbjct: 301 GQIERMK-NGIDILVGTPGRIKDHLQNGKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 356
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I+ K+ QTLLFSAT P V + +K +E ++ + + +++T V +
Sbjct: 357 ILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLA 416
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ ++ ++R V + + ++FC T + ++ + ++ + + +H P
Sbjct: 417 IKCHWTQRAAVIGDVIR--VYSGFQGRTIIFCETKKEAQELSQNVA-VRQDAQSLHGDIP 473
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R FR +LV ++V+ARG+D P+V LV+Q P D E YIHR GRTGR G
Sbjct: 474 QKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAG 533
Query: 633 KEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
+ G I EE+ L+ ++ +K V T+ + +A S ++ ++
Sbjct: 534 RTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTE--IIKASSKDAIRLLDSVPPTA 591
Query: 693 LGYYN-SNKKVGRDKYKLVELA 713
+G++ S +K+ +K + LA
Sbjct: 592 IGHFKQSAEKLIEEKGAVEALA 613
>ASPGD|ASPL0000034540 [details] [associations]
symbol:spb4 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001306 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AACD01000052
HOGENOM:HOG000268803 KO:K14809 OMA:CACVEYW RefSeq:XP_660780.1
ProteinModelPortal:Q5B8F4 STRING:Q5B8F4
EnsemblFungi:CADANIAT00009893 GeneID:2873958 KEGG:ani:AN3176.2
OrthoDB:EOG46MFT3 Uniprot:Q5B8F4
Length = 638
Score = 375 (137.1 bits), Expect = 4.2e-45, Sum P(2) = 4.2e-45
Identities = 114/379 (30%), Positives = 198/379 (52%)
Query: 375 ASTLLKYHPSIGVQVVIGGTRLALEQKR--MQANPCQILVATPGRLRDHIENTAGFATRL 432
+S++L+ P Q+++GG+ E ++ +P +LVATPGRL + + + + +
Sbjct: 135 SSSVLRVVP----QLLLGGSTSPAEDLSTFLKRSP-NLLVATPGRLLELLSSPHVYCPQ- 188
Query: 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHE 492
++LVLDEAD LLD+GF++ ++ I+ +PKQR+T LFSA+V E V QI + L+ +
Sbjct: 189 SSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVK 248
Query: 493 FINTVEEGS----EETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAM 548
+ V+ S + T ++ +L P FP L +L V P + T +
Sbjct: 249 VVVKVKGASGVDDKRTPASLQMTYLTQPPTGKFPALKHILNS-VQPTPSKSIFFVSTCSG 307
Query: 549 VTRMVADL---LGELKLNVREIHSRKPQSYRTRVSDEFRKSKG-LILVTSDVSARGVDYP 604
V + L LG + +H + P + R + + F + IL+T+DV++RG+D P
Sbjct: 308 VDYLSVILPLILGN-DFQLIPLHGKHPANVRQKNFNRFVNAHNPAILLTTDVASRGLDIP 366
Query: 605 DVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW-EEFFLS--TIKDLPILKAP 661
V LV+Q+ PSD + +IHR GR GR G+ G ++LL P EE ++S ++ P+ P
Sbjct: 367 SVDLVVQIDPPSDPKTFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVRKTPVAPFP 426
Query: 662 VPSVDPD--------TKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYKLVELA 713
P D T +KV +A + + ++A + +WL Y+ ++ +++ +L
Sbjct: 427 HPITVSDAEAAAATETARKVVKADRAIHDRGQKA-FVSWLRSYSKHQ--ASSIFRVADLD 483
Query: 714 NE-YSRSMGLDNPPAIPKL 731
E ++ GL P +P+L
Sbjct: 484 WEGLGKAWGLLKLPKMPEL 502
Score = 168 (64.2 bits), Expect = 4.2e-45, Sum P(2) = 4.2e-45
Identities = 32/99 (32%), Positives = 63/99 (63%)
Query: 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP 345
+S L + G+ +MT VQ + +P+ + KDV+ +A TG+GKT++FL+P +E +++
Sbjct: 21 LSEWVLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLR-- 78
Query: 346 PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS 384
++ ++ + +++ PTRELA+Q ++LL +HP+
Sbjct: 79 -LEEPIKKHHVGAIIVSPTRELASQIYNVLTSLLAFHPA 116
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 130/405 (32%), Positives = 201/405 (49%)
Query: 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLL 335
M+ + F + + L+ ++D G+ + T +Q A +P L G+DVL A TGTGKT A+LL
Sbjct: 1 MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL 60
Query: 336 PSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTR 395
P+++ ++ P R + PP +L++ PTRELA Q + A L K H + + + GG
Sbjct: 61 PALQHLLDFP---RKKSGPP-RILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVA 115
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
+ N I+VAT GRL +I+ F R V+ L+LDEAD +LDMGF +DI
Sbjct: 116 YMNHAEVFSENQ-DIVVATTGRLLQYIKEE-NFDCR--AVETLILDEADRMLDMGFAQDI 171
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
E I ++QTLLFSAT+ + Q L D + S +++ Q + A
Sbjct: 172 EHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDP--VEVSANPSTRERKKIHQWYYRA 229
Query: 516 PLDL-HFPLLYVLLREHVADNPEY-KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQ 573
DL H L V H+ PE + +VF +A+ L E +N + Q
Sbjct: 230 D-DLEHKTALLV----HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQ 284
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
R + + +LV +DV+ARG+D PDV+ V +P + Y+HR+GRT R G+
Sbjct: 285 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 344
Query: 634 EGQGILLLAPWEEFFLSTIK---DLPILKAPVPSVDPDTKKKVER 675
+G I L+ + L + + PI + + P T+ E+
Sbjct: 345 KGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEK 389
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 125/362 (34%), Positives = 192/362 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F+Q + + L I GY K T +QE +P + GKDVLA A TGTGKT AFLLP +
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++ P R + P VL++ PTRELA Q ++ L + I V+ GG
Sbjct: 75 LLDYP---RTKPGFP-RVLILTPTRELAIQIGEDSEQLTEL-TKIKTGVITGGVNYG-SH 128
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ + ILVATPGRL ++IEN F R +++LVLDEAD +LD+GF + I +I+A
Sbjct: 129 ADILTSTTDILVATPGRLLEYIENEQ-FDAR--EIEILVLDEADRMLDLGFSETINRIVA 185
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQ-MHLVAPLDL 519
++QT+LFSAT+ Q+ + + F+ + E+ + Q +HL +
Sbjct: 186 EARWRKQTMLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKA--VIHQWLHLADDANH 243
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
LL L++ + + +VF + ++ L +L + + PQ R +
Sbjct: 244 KLNLLVNTLKQEGVE----RTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKA 299
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
+ F+K + +LV +DV+ARG+D D++ VI +P + YIHR+GRTGR GK+G I
Sbjct: 300 IERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAIS 359
Query: 640 LL 641
L+
Sbjct: 360 LV 361
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 132/393 (33%), Positives = 208/393 (52%)
Query: 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLL 335
++E++F +++ + G++ G++ T +Q +LPVLL+G D+ +A+TG GKT+AFL
Sbjct: 6 LTETKFADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLA 65
Query: 336 PSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTR 395
+ +++ +Q R L++ PTRELA Q +A+ + K + + VV GG
Sbjct: 66 ATFHHLLQKEAPTHNQPR----ALIMAPTRELAIQIHRDATEMAK-STGLRLGVVYGGEG 120
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
++ ++A IL+ T GRL D+++ G L ++V+VLDEAD + D+GF KDI
Sbjct: 121 YESQRLELEAG-VDILIGTCGRLIDYMKQ--GIYN-LKNIEVIVLDEADRMFDLGFIKDI 176
Query: 456 EKIIAAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINT-VE-EGSEETHEQVRQM 511
+ +P +R ++LFSAT+ V+++ DH T VE E ++T+ ++ +
Sbjct: 177 RYMFDKMPPATERLSMLFSATLSFRVKELAF-----DHMNDPTSVEVEPEQKTNSRISEE 231
Query: 512 HLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRK 571
+ LL L+ E D PE K +VF T V V D L K+ V +
Sbjct: 232 LFYPSNEDKMTLLQTLIEE---DWPE-KAIVFANTKHVCEKVFDHLNADKIRVGLLTGDV 287
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
PQ R ++ +EF ILV +DV+ARG+ P VT V LP D + Y+HR+GRTGR
Sbjct: 288 PQKKRLKILEEFTDGTVDILVATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRA 347
Query: 632 GKEGQGILLLAPWEEFFLSTIK-----DLPILK 659
G+ G I L F L I+ DLP+ K
Sbjct: 348 GETGHAISLACEQYVFNLPEIETYIGHDLPVTK 380
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 127/347 (36%), Positives = 187/347 (53%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ +K AG+ + T +Q P+ +KG+D++ A+TG+GKT+++LLP+I V + + P+
Sbjct: 111 LEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI-VHVNAQPMLAH 169
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQV--VIGGTRLALEQKRMQANPC 408
P +VLV+ PTRELA Q EAS K+ S ++ + GG + + +Q
Sbjct: 170 GDGP--IVLVLAPTRELAVQIQQEAS---KFGSSSKIKTTCIYGGVPKGPQVRDLQKG-V 223
Query: 409 QILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 468
+I++ATPGRL D +E+ T L V LVLDEAD +LDMGF I KI++ + RQT
Sbjct: 224 EIVIATPGRLIDMMESNN---TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQT 280
Query: 469 LLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLL 528
L +SAT P+EV Q+ L ++ I + + + +RQ+ V + L LL
Sbjct: 281 LYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVISESQKYNKLVKLL 338
Query: 529 REHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588
E + D ++LVF T + L IH K Q+ R V EFR K
Sbjct: 339 -EDIMDGS--RILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKS 395
Query: 589 LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
I+ +DV+ARG+D DV VI P E Y+HR+GRTGR G +G
Sbjct: 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 442
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 131/419 (31%), Positives = 209/419 (49%)
Query: 303 TIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC 362
T +Q A +P +LKG D + AKTG+GKT+AF P + + P I L++
Sbjct: 25 TAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPF--------GIFGLILT 76
Query: 363 PTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI 422
PTRELA Q A E L + +I V VV+GG + +Q P ++ATPGRL DHI
Sbjct: 77 PTRELALQIA-EQFAALGANMNIKVAVVVGGEDFVQQTLALQRKP-HFVIATPGRLADHI 134
Query: 423 ENTAGFA-TRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK--QRQTLLFSATVPEEV 479
N+ + L VK LVLDEAD LL F D+++ +P +RQTLLF+AT+ + V
Sbjct: 135 LNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDKRQTLLFTATITDAV 194
Query: 480 RQICHIALK--RDHEFINTVEEGSEETHEQVRQMHLV-APLDLHFPLLYVLLREHVADNP 536
R + + F++ VE + Q+ V P + L +L H+
Sbjct: 195 RALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYVKEAYLNSIL--HLEQFK 252
Query: 537 EYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596
+ ++F ++ +L +L V +HS PQS RT F+ IL+ +DV
Sbjct: 253 DSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDV 312
Query: 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLP 656
++RG+D P V LVI +P+D + +IHR+GRT R G++G + ++ + + +I++
Sbjct: 313 ASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEER- 371
Query: 657 ILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYKLVELANE 715
I K D + ++ +LS + +E+ + + KK+ R K+ L ++ E
Sbjct: 372 INKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERKKINRKKHGLDKVKPE 430
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 482 (174.7 bits), Expect = 1.1e-44, P = 1.1e-44
Identities = 139/442 (31%), Positives = 228/442 (51%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 257 EGAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 316
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE ++ DR + R P VLV+ PTRELA+Q + + S + K + V GGT
Sbjct: 317 IEK-LQGELQDRKRGRAP-QVLVLAPTRELASQVSRDFSDITK---KLAVACFYGGTPYG 371
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ RM+ N ILV TPGR++DH++N T+L K +VLDE D +LDMGF +E+
Sbjct: 372 GQIDRMR-NGIDILVGTPGRIKDHLQNNKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 427
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I+ K+ QTLLFSAT P V + +K +E ++ + + +++T V +
Sbjct: 428 ILCVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLA 487
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ ++ ++R V + + ++FC T + ++ ++ + + +H P
Sbjct: 488 IKCHWTQRAAVIGDVIR--VYSGYQGRTIIFCETKKEAQELSQNAA-VRQDAQSLHGDIP 544
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R FR +LV ++V+ARG+D P+V LV+Q P D E YIHR GRTGR G
Sbjct: 545 QKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAG 604
Query: 633 KEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAW 692
+ G I EE+ L+ ++ +K V T+ + +A S ++ ++
Sbjct: 605 RTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTE--IIKASSKDAIRLLDSVPPTA 662
Query: 693 LGYYN-SNKKVGRDKYKLVELA 713
+G++ S +K+ +K + LA
Sbjct: 663 IGHFKQSAEKLIEEKGAVEALA 684
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 124/347 (35%), Positives = 187/347 (53%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ I G+ + T +Q P+ LKG+D++ A+TG+GKT+A+LLP++ V P + +D
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD 236
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPC 408
PI VL++ PTRELA Q E+ K+ GV+ + GG + + ++
Sbjct: 237 DG--PI-VLILAPTRELAVQIQEESR---KFGLRSGVRSTCIYGGAPKGPQIRDLRRG-V 289
Query: 409 QILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 468
+I++ATPGRL D +E T L V LVLDEAD +LDMGF I KI++ + RQT
Sbjct: 290 EIVIATPGRLIDMLECQH---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 346
Query: 469 LLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLL 528
LL+SAT P EV + L+ ++ I + + ++ + Q+ + P + L LL
Sbjct: 347 LLWSATWPREVETLARQFLRDPYKAI--IGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 404
Query: 529 REHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588
++ + D K+L+F T V L IH K QS R RV EF+ +
Sbjct: 405 KQ-LMDGS--KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 461
Query: 589 LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
I+ +DV+ARG+D D+ V+ P+ E YIHR+GRTGR G +G
Sbjct: 462 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKG 508
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 119/358 (33%), Positives = 192/358 (53%)
Query: 283 QCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVI 342
+ IS +K + G EK+ +Q+A L ++G+D++ +A+TGTGKT+AF +P I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 343 KSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKR 402
K R P L LV+ PTRELA Q E + PS+ + GGT + + ++
Sbjct: 168 KYNAKHGRGRNP--LCLVLAPTRELARQVEKE---FRESAPSLDTICLYGGTPIGQQMRQ 222
Query: 403 MQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV 462
+ + V TPGR+ D ++ G A L V+ +VLDEAD +L +GF +D+E I+ +
Sbjct: 223 LDYG-VDVAVGTPGRVIDLMKR--G-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
Query: 463 PKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFP 522
P++RQ+++FSAT+P +R + L ++ V + ++ + + ++A
Sbjct: 279 PEKRQSMMFSATMPSWIRSLTKKYLNNPLT-VDLVGDSDQKLADGITTYSIIADSYGRAS 337
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDE 582
++ L+ EH K +VF T ++ L +H QS R R
Sbjct: 338 IIGPLVTEHAKGG---KCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAG 393
Query: 583 FRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
FR ILV +DV+ARG+D P+V L+I LP++ E ++HR GRTGR GK+G IL+
Sbjct: 394 FRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILI 451
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 450 (163.5 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 132/401 (32%), Positives = 205/401 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + A ++ I+ + + T +Q PV L G D++ A+TG+GKT+++LLP+I
Sbjct: 92 FYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 151
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ P ++R PI LV+ PTRELA Q A+ +Y + ++ + GG
Sbjct: 152 INHQPFLERGDG--PIC-LVLAPTRELAQQVQQVAA---EYSRACRLKSTCIYGGAPKGP 205
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ + ++ +I +ATPGRL D +E AG T L LVLDEAD +LDMGF I KI
Sbjct: 206 QIRDLERG-VEICIATPGRLIDFLE--AG-KTNLRRCTYLVLDEADRMLDMGFEPQIRKI 261
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL- 517
+ + RQTL++SAT P+EVRQ+ LK E+++ + G+ E + +V
Sbjct: 262 VDQIRPDRQTLMWSATWPKEVRQLAEDFLK---EYVH-INIGALELSANHNILQIVDVCH 317
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN---VREIHSRKPQS 574
D+ + L E + E K +VF T R DL +++ + IH K Q
Sbjct: 318 DVEKDDKLIRLMEEIMSEKENKTIVFVETK---RRCDDLTRKMRRDGWPAMGIHGDKSQQ 374
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R V +EF+ K IL+ +DV++RG+D DV VI P+ E YIHR+GRT R K
Sbjct: 375 ERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKT 434
Query: 635 GQGILLLAPWEEFFLSTIKDL-PILKAPVPSVDPDTKKKVE 674
G P + + DL +L+ +++P + +E
Sbjct: 435 GTAYTFFTPNN---IKQVNDLISVLREANQAINPKLLQLIE 472
Score = 38 (18.4 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 78 RPAASSEFGRRGSRAGEIRGSK 99
R + FG GSRAG + G K
Sbjct: 10 RGFGAPRFG--GSRAGPLSGKK 29
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 450 (163.5 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 132/401 (32%), Positives = 205/401 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + A ++ I+ + + T +Q PV L G D++ A+TG+GKT+++LLP+I
Sbjct: 84 FYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 143
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
+ P ++R PI LV+ PTRELA Q A+ +Y + ++ + GG
Sbjct: 144 INHQPFLERGDG--PIC-LVLAPTRELAQQVQQVAA---EYSRACRLKSTCIYGGAPKGP 197
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ + ++ +I +ATPGRL D +E AG T L LVLDEAD +LDMGF I KI
Sbjct: 198 QIRDLERG-VEICIATPGRLIDFLE--AG-KTNLRRCTYLVLDEADRMLDMGFEPQIRKI 253
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL- 517
+ + RQTL++SAT P+EVRQ+ LK E+++ + G+ E + +V
Sbjct: 254 VDQIRPDRQTLMWSATWPKEVRQLAEDFLK---EYVH-INIGALELSANHNILQIVDVCH 309
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN---VREIHSRKPQS 574
D+ + L E + E K +VF T R DL +++ + IH K Q
Sbjct: 310 DVEKDDKLIRLMEEIMSEKENKTIVFVETK---RRCDDLTRKMRRDGWPAMGIHGDKSQQ 366
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R V +EF+ K IL+ +DV++RG+D DV VI P+ E YIHR+GRT R K
Sbjct: 367 ERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKT 426
Query: 635 GQGILLLAPWEEFFLSTIKDL-PILKAPVPSVDPDTKKKVE 674
G P + + DL +L+ +++P + +E
Sbjct: 427 GTAYTFFTPNN---IKQVNDLISVLREANQAINPKLLQLIE 464
Score = 37 (18.1 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 85 FGRRGSRAGEIRGSK 99
FG GSRAG + G K
Sbjct: 9 FG--GSRAGPLSGKK 21
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 123/376 (32%), Positives = 202/376 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + L+ I++ G+ + T VQ +P L G+DVLA A TGTGKT AF++P+++
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++ P ++ P +L++ PTRELA Q A +A L K + + + + GG + E
Sbjct: 65 LLDFPR----RKAGPARILILTPTRELAMQVAEQAQALAK-NTRLNIFTITGGVQYQ-EH 118
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ A I+VATPGRL ++I+ F R ++ L+LDEAD +LDMGF ++++
Sbjct: 119 ADILATTQDIVVATPGRLLEYID-AERFDCR--AIEWLILDEADRMLDMGFGPTVDRLST 175
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
++QTLLFSAT+ + L +D ++ E +++ Q + A D+
Sbjct: 176 ECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDA--EPPRRERKKISQWYHRAD-DM- 231
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK---LNVREIHSRKPQSYRT 577
P LL++ + + E + +VF T +ADL EL+ + I PQ R
Sbjct: 232 -PHKVELLKKILTEQAE-RSIVFLKTR---ERLADLRAELEKAQIPCAWIQGEMPQDRRN 286
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
FR+ IL+ +DV+ARG+D PD++ VI LP + Y+HR+GRTGR GK+G
Sbjct: 287 NAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIA 346
Query: 638 ILLLAPWEEFFLSTIK 653
I L+ ++ ++ ++
Sbjct: 347 ISLVEAHDQPMMARVE 362
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 123/376 (32%), Positives = 202/376 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + L+ I++ G+ + T VQ +P L G+DVLA A TGTGKT AF++P+++
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++ P ++ P +L++ PTRELA Q A +A L K + + + + GG + E
Sbjct: 65 LLDFPR----RKAGPARILILTPTRELAMQVAEQAQALAK-NTRLNIFTITGGVQYQ-EH 118
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ A I+VATPGRL ++I+ F R ++ L+LDEAD +LDMGF ++++
Sbjct: 119 ADILATTQDIVVATPGRLLEYID-AERFDCR--AIEWLILDEADRMLDMGFGPTVDRLST 175
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
++QTLLFSAT+ + L +D ++ E +++ Q + A D+
Sbjct: 176 ECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDA--EPPRRERKKISQWYHRAD-DM- 231
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK---LNVREIHSRKPQSYRT 577
P LL++ + + E + +VF T +ADL EL+ + I PQ R
Sbjct: 232 -PHKVELLKKILTEQAE-RSIVFLKTR---ERLADLRAELEKAQIPCAWIQGEMPQDRRN 286
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
FR+ IL+ +DV+ARG+D PD++ VI LP + Y+HR+GRTGR GK+G
Sbjct: 287 NAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIA 346
Query: 638 ILLLAPWEEFFLSTIK 653
I L+ ++ ++ ++
Sbjct: 347 ISLVEAHDQPMMARVE 362
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 121/354 (34%), Positives = 185/354 (52%)
Query: 288 ALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPV 347
AL+L I+ Y + T VQ +P+LL +D++A A+TG+GKT AF P I ++K V
Sbjct: 161 ALNLN-IRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHV 219
Query: 348 DRDQRRPPI--LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQA 405
+R + + +++ PTRELA Q EA Y + V V GGT + + + ++
Sbjct: 220 ERPRGSRAVYPFAVILSPTRELACQIHDEAKKF-SYQTGVKVVVAYGGTPIHQQLRELER 278
Query: 406 NPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV--- 462
C ILVATPGRL D +E + ++ L LDEAD +LDMGF I KI+ +
Sbjct: 279 G-CDILVATPGRLNDLLERAR---VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMP 334
Query: 463 PKQ-RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF 521
P+ RQT+LFSAT P +++++ + ++ F+ GS T +++ V D
Sbjct: 335 PRGVRQTMLFSATFPSQIQRLAADFMS-NYIFLAVGRVGSS-TDLITQRVEFVQESDKRS 392
Query: 522 PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSD 581
L+ +L + + + LVF T + + L + IH + Q R
Sbjct: 393 HLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALR 452
Query: 582 EFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
F+ + ILV +DV+ARG+D P V V+ LP+D + Y+HR+GRTGR GK G
Sbjct: 453 SFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 506
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 480 (174.0 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 133/408 (32%), Positives = 212/408 (51%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 187 EGAFSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPL 246
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
I V ++ DR + R P VLV+ PTRELA Q + + S + + + V GGT
Sbjct: 247 I-VKLQGELQDRKRGRAP-QVLVLAPTRELANQVSRDFSDITR---KLAVACFYGGTPYG 301
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +RM+ N ILV TPGR++DH++N T+L K +VLDE D +LDMGF +E+
Sbjct: 302 GQIERMR-NGIDILVGTPGRIKDHLQNGKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 357
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I++ K+ QTLLFSAT P V + +K +E ++ + + +++T V +
Sbjct: 358 ILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLA 417
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ ++ ++R V + ++FC T + ++ + ++ + + +H P
Sbjct: 418 IKCHWTQRAAVIGDVIR--VYSGFHGRTIIFCETKKEAQELSQNVS-IRQDAQSLHGDIP 474
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R FR +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTGR G
Sbjct: 475 QKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAG 534
Query: 633 KEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVERAL 677
+ G I EE+ L+ ++ + + VPS K + A+
Sbjct: 535 RTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 582
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 480 (174.0 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 133/408 (32%), Positives = 212/408 (51%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 187 EGAFSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPL 246
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
I V ++ DR + R P VLV+ PTRELA Q + + S + + + V GGT
Sbjct: 247 I-VKLQGELQDRKRGRAP-QVLVLAPTRELANQVSRDFSDITR---KLAVACFYGGTPYG 301
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +RM+ N ILV TPGR++DH++N T+L K +VLDE D +LDMGF +E+
Sbjct: 302 GQIERMR-NGIDILVGTPGRIKDHLQNGKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 357
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I++ K+ QTLLFSAT P V + +K +E ++ + + +++T V +
Sbjct: 358 ILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLA 417
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ ++ ++R V + ++FC T + ++ + ++ + + +H P
Sbjct: 418 IKCHWTQRAAVIGDVIR--VYSGFHGRTIIFCETKKEAQELSQNVS-IRQDAQSLHGDIP 474
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R FR +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTGR G
Sbjct: 475 QKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAG 534
Query: 633 KEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVERAL 677
+ G I EE+ L+ ++ + + VPS K + A+
Sbjct: 535 RTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 582
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 124/358 (34%), Positives = 186/358 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD+ + +K G+ T +Q P+ L G+DV+ A+TG+GKT+ + LP+I V
Sbjct: 127 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI-V 185
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
I + P+ P +VL++ PTRELA Q E S K I V GG Q
Sbjct: 186 HINAQPLLAPGDGP--IVLILAPTRELAVQIQAEISKFGK-SSRIRNTCVYGGVPKG-PQ 241
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
R + ++ +ATPGRL D +E+ G T L V LVLDEAD +LDMGF I KII
Sbjct: 242 IRDLSRGVEVCIATPGRLIDMLES--G-KTNLRRVTYLVLDEADRMLDMGFEPQIRKIIG 298
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ RQTL++SAT P+EVR + L+ D +N H + + +V+ +
Sbjct: 299 QIRPDRQTLMWSATWPKEVRNMAADFLQ-DFIQVNIGSLDLSANHRITQIVEVVSESEKR 357
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580
++ + + + + K+L+F T V + L + IH K Q+ R V
Sbjct: 358 DRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVL 417
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
D+F+ K I+V +DV++RG+D ++T V+ P++ E YIHR+GRTGR G +G I
Sbjct: 418 DQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAI 475
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 479 (173.7 bits), Expect = 3.8e-44, P = 3.8e-44
Identities = 122/380 (32%), Positives = 202/380 (53%)
Query: 274 SFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF 333
SF +++ F + ++S L+ + GY+K T +Q A +P+ L G+D+ A A TG+GKT AF
Sbjct: 163 SFHADT-FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAF 221
Query: 334 LLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
LP++E ++ P +R VL++ PTRELA Q + L ++ I +++GG
Sbjct: 222 ALPTLERLLFRP-----KRVFATRVLILTPTRELAVQIHSMIQNLAQF-TDIKCGLIVGG 275
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ ++ +++ P I+VATPGR+ DH+ N+ + L + VL+LDEAD LL GF
Sbjct: 276 LSVREQEVVLRSMP-DIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLQTGFAT 332
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEF-INTVEEGSEETHEQVRQMH 512
+I +++ PK+RQT+LFSAT+ EEV+++ ++L + + E+V ++
Sbjct: 333 EITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIR 392
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ LL + R + KV++F T + L G L E+H
Sbjct: 393 RTREANQEAVLLSLCTRTFKS-----KVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLT 447
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q+ R + FRK + L+ +DV+ARG+D V VI P + + Y+HR+GRT R G
Sbjct: 448 QAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAG 507
Query: 633 KEGQGILLLAPWEEFFLSTI 652
+EG + + + L I
Sbjct: 508 REGYAVTFVTDSDRSLLKVI 527
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 471 (170.9 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 133/397 (33%), Positives = 205/397 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
++ I+ AG++K T +Q P++L+G D++ A+TGTGKT+++L+P + I S PV +
Sbjct: 253 MRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGF-IHIDSQPVLQR 311
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
R P + LV+ PTRELA Q E S Y V + GG R Q + + I
Sbjct: 312 ARNGPGM-LVLTPTRELALQVDAECSEY-SYRGLKSVCIYGGGDRDG--QIKDLSKGADI 367
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
++ATPGRL D N + L + LVLDEAD +LDMGF I KI+ V RQT++
Sbjct: 368 IIATPGRLHDLQMNNFVY---LKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVM 424
Query: 471 FSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
SAT P VR++ LK ++ T++ + T V Q +V D + +
Sbjct: 425 TSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVST---VTQNIIVTTEDEKRSHIQAFID 481
Query: 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
+P+ KV++F + V ++ LG +++V +H + QS R R F+ K
Sbjct: 482 SM---SPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVR 538
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL 649
IL+ +D+++RG+D DVT V P + E+Y+HR+GRTGR G+ G I L+ +
Sbjct: 539 ILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIA 598
Query: 650 STIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKE 686
+ + IL+ SV D ER ++ K E
Sbjct: 599 GEL--INILERANQSVPEDLVSMAERYKANKLKKETE 633
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 122/356 (34%), Positives = 190/356 (53%)
Query: 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP 345
IS +K +K G EK+ +Q+A L ++G+D++ +A+TGTGKT+AF +P I+ +IK
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFN 182
Query: 346 PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQA 405
+ P LVL PTRELA Q E + PS+ + GGT + + + +
Sbjct: 183 AKHGRGKNPQCLVLA--PTRELARQVEKE---FRESAPSLDTICLYGGTPIGQQMRELNY 237
Query: 406 NPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ 465
+ V TPGR+ D ++ G A L V+ +VLDEAD +L +GF +D+E I+ +P +
Sbjct: 238 G-IDVAVGTPGRIIDLMKR--G-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAK 293
Query: 466 RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLY 525
RQ+++FSAT+P +R + L I+ V + ++ + + + A ++
Sbjct: 294 RQSMMFSATMPSWIRSLTKKYLNNPLT-IDLVGDSDQKLADGITMYSIAADSYGRASIIG 352
Query: 526 VLLREHVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR 584
L++EH K +VF T R+ L K +H Q+ R R FR
Sbjct: 353 PLVKEHGKGG---KCIVFTQTKRDADRLAFGLAKSYKCEA--LHGDISQAQRERTLAGFR 407
Query: 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
ILV +DV+ARG+D P+V LVI LP++ E ++HR GRTGR GK+G IL+
Sbjct: 408 DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILI 463
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 478 (173.3 bits), Expect = 6.1e-44, P = 6.1e-44
Identities = 150/408 (36%), Positives = 206/408 (50%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F Q +K I AG+ T +Q P+ LKG+D++ AKTG+GKT+AFLLPSI
Sbjct: 385 QFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSI- 443
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
V I + PV R+ P +VLV+ PTRELA Q E + I V GG +
Sbjct: 444 VHINAQPVLREDDGP--IVLVLAPTRELALQIQEETNKF-GGTSQISNTCVYGGASKHTQ 500
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
++ +I++ATPGRL D +E+ G T L V LVLDEAD +LDMGF I KII
Sbjct: 501 VAALKKG-VEIVIATPGRLIDILES--G-KTNLRRVTYLVLDEADRMLDMGFEPQIRKII 556
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEE--THEQVRQMHLVAPL 517
+ + RQTL+FSAT P+EV+ + H L DH I V GS E + VRQ+ V
Sbjct: 557 SQIRPDRQTLMFSATWPKEVQALAHDFLT-DH--IQ-VHIGSTEITANHNVRQIVEVCQ- 611
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE---IHSRKPQS 574
F +L + + KV+VF T + V DL L+ + + IH K Q
Sbjct: 612 --DFEKKERMLSFLGSVGRDEKVIVFAETR---KGVDDLQRVLQFSGFKSIGIHGNKSQP 666
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R V +F+ I++ +DV++RG+D D+ V+ P+ E YIHR+GRT R G
Sbjct: 667 ERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGAS 726
Query: 635 GQGILLLAPWEEFFLST-IKDLPILKAPVP------SVDPDTKKKVER 675
G LL + IK L K +P SV P T ++
Sbjct: 727 GVSYSLLTTDNARLANELIKVLTEAKQKIPIELSNLSVTPSTSSNTKK 774
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 134/400 (33%), Positives = 205/400 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
+ I+ G++K T +Q P++L+G D++ A+TGTGKT+A+L+P + + S P+ +D
Sbjct: 65 MANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGF-IHLASQPIPKD 123
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTRLALEQKRMQANPC 408
+R P + LV+ PTRELA Q E LKY + I GG R A Q +
Sbjct: 124 KRGGPGM-LVLAPTRELALQVEAEC---LKYTYKGFKSICIYGGGDRKA--QINVVTKGV 177
Query: 409 QILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 468
I++ATPGRL D N F L + LVLDEAD +LDMGF I KI+ V RQT
Sbjct: 178 DIVIATPGRLNDLQMNN--FIN-LKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQT 234
Query: 469 LLFSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLH-FPLLYV 526
++ SAT P+ VR++ L+ ++ T++ V +L D+ + + V
Sbjct: 235 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSG----VVLKYLQFDKDIFTWKYMQV 290
Query: 527 LLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS 586
+ D V+VF +V +A LG + V+ +H + Q R + D+F+K
Sbjct: 291 NAQSFCTD----VVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKG 346
Query: 587 KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646
K ILV +D+++RG+D D+T V P + E+Y+HR+GRTGR G+ G+ + L+ +
Sbjct: 347 KVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDW 406
Query: 647 FFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKE 686
S + D IL+ V + ER H K E
Sbjct: 407 KAASELID--ILQRAKQVVPDELISMAERYKQHQIRKEME 444
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 469 (170.2 bits), Expect = 6.6e-44, Sum P(2) = 6.6e-44
Identities = 135/406 (33%), Positives = 206/406 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + +GKD++A+A+TGTGKT +F +P
Sbjct: 138 EGAFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 197
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE + ++ + R P +LVL PTRELA Q A + + + + V GGT
Sbjct: 198 IERLQRNQETIKKSRSPKVLVLA--PTRELANQVAKDFKDITR---KLSVACFYGGTSYQ 252
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ ++ N ILV TPGR++DH+++ ++L V VLDE D +LD+GF + +E
Sbjct: 253 SQINHIR-NGIDILVGTPGRIKDHLQSGRLDLSKLRHV---VLDEVDQMLDLGFAEQVED 308
Query: 458 IIAAVPK-----QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
II K QTLLFSAT P+ V ++ +K +E ++ V + +++ V H
Sbjct: 309 IIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE--H 366
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHS 569
L + H+ ++ + V E + ++FC T VT M + +K N + +H
Sbjct: 367 LA--IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN--PHIKQNAQCLHG 422
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
QS R FR+ +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTG
Sbjct: 423 DIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG 482
Query: 630 RKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKK 672
R G+ G I P E L ++ + + VPS K K
Sbjct: 483 RAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 528
Score = 39 (18.8 bits), Expect = 6.6e-44, Sum P(2) = 6.6e-44
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 103 DDEAELSDWVSDLRTDSFHSNKRFSKDDDVSDFRKGSGR 141
D E ++ +SD + S S ++ + D+ ++ K S R
Sbjct: 74 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKR 112
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 447 (162.4 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 133/422 (31%), Positives = 210/422 (49%)
Query: 325 TGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS 384
TG+GKT+AF++P +E++++ + ++ + ++I PTRELA Q + K P
Sbjct: 190 TGSGKTLAFVIPILEILLRR---EEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQ 246
Query: 385 IGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTA---GFATRLMGVKVLVLD 441
+ IGG A + R + I+VATPGRL D A+ + ++VLVLD
Sbjct: 247 FSQILWIGGRNPADDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLD 306
Query: 442 EADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEG- 500
EAD LLDMGF I I+ +PKQR+T LFSAT +EV + L R+ I+ E+G
Sbjct: 307 EADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVESLVRAGL-RNPVRISVKEKGV 365
Query: 501 ----SEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADL 556
+++T ++ ++V D F L LR H + K L+F +T
Sbjct: 366 AASSTQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQE----KHLIFFSTCACVEYYGKA 421
Query: 557 LGELKLNVRE--IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL 614
L L +V+ IH K + R ++ EFRK + ILV +DV ARG+D P+V V+Q
Sbjct: 422 LEALVKSVKIMCIHG-KMKHKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDP 480
Query: 615 PSDREQYIHRLGRTGRKGKEGQGILLLAPWEEF---FLSTIKDLPILKAPVPSVDPDTKK 671
PS ++HR GRT R G G ++ L P EE FL + P+ + + D
Sbjct: 481 PSSASAFVHRCGRTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLLP 540
Query: 672 KVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDK-YKLVELA-NEYSRSMGLDNPPAIP 729
K+ ++++ + E +A++ Y + K + ++L +L +R L P +P
Sbjct: 541 KL-KSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMP 599
Query: 730 KL 731
+L
Sbjct: 600 EL 601
Score = 74 (31.1 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGK 329
L + G+ MT VQ AT+P+ +K KDV A+A + + K
Sbjct: 125 LGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVSTSWK 163
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 134/388 (34%), Positives = 203/388 (52%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
S F ++ L + AGY T +QE +P++++G+D++ A+TGTGKT+AF P +
Sbjct: 7 SDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPIL 66
Query: 339 EVVIKSP-PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTR 395
+ + ++ P R VLV+ PTRELA Q AT T Y + ++VV+ GG +
Sbjct: 67 DRLSRNASPAPVRGTR----VLVLAPTRELAGQIATSFGT---YGAGLNLRVVMVCGGAK 119
Query: 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455
+ + ++++ ILVATPGRL D +E A L V+ L+LDEAD +LD+GF +
Sbjct: 120 IGGQIRQLERG-AHILVATPGRLIDLMEQRA---VSLDKVETLILDEADQMLDLGFIHAL 175
Query: 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
I VP +RQTL FSAT+P+ V + L+ E ++ + T ++ Q V
Sbjct: 176 RAIAKNVPSKRQTLFFSATMPKAVESLAATFLRNPAE-VSVAPPAT--TAGRIEQR--VC 230
Query: 516 PLDLHFPLLYVLLREHVADNPEYK-VLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQS 574
++ P LL E + D PE + +VF T V L + ++ IH K QS
Sbjct: 231 FVEQ--PEKASLLIEKIRD-PELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQS 287
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R + + F+ + ILV +D++ARG+ +T VI LP EQ++HR+GRT R G
Sbjct: 288 QREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNS 347
Query: 635 GQGILLLAPWEEFFLSTIKDLPILK-AP 661
G I + E L I+ L LK AP
Sbjct: 348 GVAISFCSRDERPTLRAIEKLTGLKLAP 375
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 478 (173.3 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 126/371 (33%), Positives = 192/371 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F++ S+ A ++ +K G+ K T +Q P+ L G+D++ A+TG+GKT+A++LP+I
Sbjct: 239 FEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 298
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAAT---EASTLLKYHPSIGVQVVIGGTRLA 397
+ PP+ R + PI LV+ PTRELA Q + + L K P I + GG+
Sbjct: 299 IGNQPPIIRGEG--PI-ALVLAPTRELAQQIQSVVRDYGHLCK--PEIRHTCIFGGSS-K 352
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ Q R ++++ATPGRL D +EN T L LVLDEAD +LDMGF I K
Sbjct: 353 VPQARDLDRGVEVIIATPGRLIDFLENRN---TNLQRCTYLVLDEADRMLDMGFEPQIRK 409
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
II + RQ +++SAT P+EV+ + L D+ IN H +RQ+ +
Sbjct: 410 IIEQIRPDRQVVMWSATWPKEVQALAGDFLN-DYIQINIGSMNLSANHN-IRQIVEICT- 466
Query: 518 DLHFPLLYVLLREHVAD-----NPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
++ P V L ++ N K++VF T + + ++ N IH K
Sbjct: 467 EIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKT 526
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q+ R V +FR K IL+ +DV++RG+D D+ VI P+ E Y+HR+GRTGR
Sbjct: 527 QNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQ 586
Query: 633 KEGQGILLLAP 643
+ G P
Sbjct: 587 QLGTAYTFFTP 597
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 132/398 (33%), Positives = 201/398 (50%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F QCS + + D + + T +Q P+ L G+D++ A+TG+GKT+A+LLP+I
Sbjct: 92 FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 151
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ P ++R PI LV+ PTRELA Q A K + + GG +
Sbjct: 152 INHQPYLERGDG--PIC-LVLAPTRELAQQVQQVADDYGKCS-RLKSTCIYGGAPKGPQI 207
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ ++ +I +ATPGRL D +E AG T L LVLDEAD +LDMGF I KI+
Sbjct: 208 RDLERG-VEICIATPGRLIDFLE--AG-KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 263
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ RQTL++SAT P+EVRQ+ L+ D+ IN H ++ + + +
Sbjct: 264 QIRPDRQTLMWSATWPKEVRQLAEDFLQ-DYVQINVGNLELSANHNILQIVDVCMESEKD 322
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN---VREIHSRKPQSYRT 577
L+ L+ E +A+ E K ++F T R DL ++ + IH K Q R
Sbjct: 323 HKLIQ-LMEEIMAEK-ENKTIIFVETK---RRCDDLTRRMRRDGWPAMCIHGDKSQPERD 377
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
V +EFR K IL+ +DV++RG+D DV VI P+ E Y+HR+GRT R +G
Sbjct: 378 WVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 437
Query: 638 ILLLAPWEEFFLSTIKDL-PILKAPVPSVDPDTKKKVE 674
P L ++L +L+ +++P + V+
Sbjct: 438 YTFFTPGN---LKQARELIKVLEEANQAINPKLMQLVD 472
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 135/426 (31%), Positives = 220/426 (51%)
Query: 263 SVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEA------TLPVLLKG 316
+V +++P +HDS E Q ++ K KD G ++ EA T P ++
Sbjct: 24 AVDMAAPEEHDSPAEEP---QPAVQEEETKTFKDLGVTD--VLCEACDQLGWTKPTKIQI 78
Query: 317 KDV-LA---KAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372
+ + LA + G +T + + + I + ++ QR + LV+ PTRELA Q +
Sbjct: 79 EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR---LFALVLTPTRELAFQIS 135
Query: 373 TEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFAT 430
+ L SIGVQ V++GG ++ Q A I++ATPGRL DH+ENT GF
Sbjct: 136 EQFEAL---GSSIGVQSAVIVGGID-SMSQSLALAKKPHIVIATPGRLIDHLENTKGF-- 189
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRD 490
L +K LV+DEAD +L+M F +++KI+ +P+ R+T LFSAT+ ++V+++ ALK
Sbjct: 190 NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNP 249
Query: 491 HEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVT 550
+ +T E+++Q +L P L +L E +A N ++FC+T T
Sbjct: 250 ---VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE-LAGN---SFMIFCSTCNNT 302
Query: 551 RMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI 610
+ A LL L +H + QS R ++F+ IL+ +DV++RG+D P V +V+
Sbjct: 303 QRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVV 362
Query: 611 QVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPV-PSVDPDT 669
+P+ + YIHR+GRT R G+ G+ I + ++ I+ L K PV P+ D +
Sbjct: 363 NFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDDEV 422
Query: 670 KKKVER 675
ER
Sbjct: 423 MMLTER 428
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 146/482 (30%), Positives = 240/482 (49%)
Query: 276 MSES-RFDQCSISALSL--KGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVA 332
MS+S +D S L G+ G+E MT VQ +T+P+L KDV+ + TG+GKT A
Sbjct: 1 MSKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAA 60
Query: 333 FLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS----IGVQ 388
F++P +E V+K ++ L+I PTREL+ Q + + L+++PS I Q
Sbjct: 61 FVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQ 120
Query: 389 VVIGGTRLALEQ--KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHL 446
+++G + N QIL+ TPGR+ D ++ A + ++V+DEAD L
Sbjct: 121 LLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPA---VKTSACSMVVMDEADRL 177
Query: 447 LDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHE 506
LDM F KD EKI+ +PKQR+T LFSAT+ I L+ TV ++
Sbjct: 178 LDMSFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRI--TVNSKNQAPSS 235
Query: 507 QVRQMHLVAPLDLHFPLLYVLLREHVADNPEYK--VLVFCTTAMVTRMVADL--LGELKL 562
+V P + LL +L +N ++K ++ F T V+ + + LG+ +
Sbjct: 236 LKLNYCVVNPAE-KLQLLVSIL-----NNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNI 289
Query: 563 NVREI-----HSRKPQSYRTRVSDEFRKS-KGLILVTSDVSARGVDYPDVTLVIQVGLPS 616
V E+ H + S RT+ F S +L T+DV+ARG+D PDV LVIQ+ P+
Sbjct: 290 LVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPT 349
Query: 617 DREQYIHRLGRTGRKGKEGQGILLLAPW-EEFFLS--TIKDLPI--LKAPVPSVDPDTKK 671
+ + ++HR GRTGR + G+ I L EE F+ +K++ + L V + + +
Sbjct: 350 NTDMFMHRCGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYE 409
Query: 672 KVER-ALSHVEMKNKEA-AYQAWLGYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIP 729
L + +K AY A++ YY+++ + + ++ ++ GL P +P
Sbjct: 410 DFRNWILEDRDRFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVG-IAKLYGLFRLPRMP 468
Query: 730 KL 731
++
Sbjct: 469 EI 470
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 471 (170.9 bits), Expect = 1.4e-43, P = 1.4e-43
Identities = 140/403 (34%), Positives = 210/403 (52%)
Query: 257 KENGGMSVA------ISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATL 310
K+N G++ A + + G HD + F + + I A Y+ T VQ+ ++
Sbjct: 159 KQNTGINFANYDDIPVEASG-HDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSI 217
Query: 311 PVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKS----PPVDRD-----QRRPPILVLVI 361
P+++ G+D++A A+TG+GKT FL P + ++ PP QR+ L++
Sbjct: 218 PIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLIL 277
Query: 362 CPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDH 421
PTREL +Q EA Y + VV GG + + ++++ C +LVATPGRL D
Sbjct: 278 APTRELVSQIFDEARKFA-YRSWVRPCVVYGGADIGSQLRQIERG-CDLLVATPGRLVDL 335
Query: 422 IENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VPK--QRQTLLFSATVPE 477
IE G + L+ +K L+LDEAD +LDMGF I +I+ +P RQTL+FSAT P
Sbjct: 336 IER--GRIS-LVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPR 392
Query: 478 EVRQICHIALKRDHEFINTVEEGSEETHEQVRQ-MHLVAPLDLHFPLLYVLLREHVADNP 536
+++ + LK D+ F++ GS T E + Q + V D LL +L H
Sbjct: 393 DIQMLARDFLK-DYVFLSVGRVGS--TSENITQKVEYVEDHDKRSVLLDIL---HTHGTT 446
Query: 537 EYKVLVFCTTAMVTRMVADLLGELKLNVR----EIHSRKPQSYRTRVSDEFRKSKGLILV 592
L+F + T+ +AD L E +N R IH + Q R R + FR + ILV
Sbjct: 447 GL-TLIF----VETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILV 501
Query: 593 TSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
+ V+ARG+D P+VT VI LP+D + Y+HR+GRTGR G G
Sbjct: 502 ATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 544
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 123/349 (35%), Positives = 182/349 (52%)
Query: 347 VDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQAN 406
+D +R P L+L PTRELA Q AT T K P + V V GG + + K ++ N
Sbjct: 68 IDPSKREPQALILA--PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR-N 124
Query: 407 PCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQR 466
QI+VATPGRL DH+ L V LVLDEAD +L +GF D+E I A+P+ R
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKV---LATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181
Query: 467 QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYV 526
QT+LFSAT+P+ +R I LK D + + + +T + Q HL+ D +
Sbjct: 182 QTVLFSATLPQSIRAIAERHLK-DPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLS 238
Query: 527 LLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS 586
LL D +++F T T +A L ++ Q+ R RV D +
Sbjct: 239 LLEVEDFD----ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDG 294
Query: 587 KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646
+ I+V +DV+ARG+D P +T V V +P D E Y+HR+GRTGR G+EG+ +LL+ P E
Sbjct: 295 RLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRER 354
Query: 647 FFLSTIKDLP---ILKAPVPSVDP--DTK-KKVERALSHVEMKNKEAAY 689
L I+ + + + +P D + KK+ +LS + + + EA +
Sbjct: 355 RMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPL-VADAEATH 402
Score = 375 (137.1 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 89/221 (40%), Positives = 127/221 (57%)
Query: 298 GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357
GYE+ + +Q+ ++P++L G D++ +A+TGTGKT AF LP + +D +R P L
Sbjct: 25 GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH------RIDPSKREPQAL 78
Query: 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGR 417
+L PTRELA Q AT T K P + V V GG + + K ++ N QI+VATPGR
Sbjct: 79 ILA--PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGR 135
Query: 418 LRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477
L DH+ L V LVLDEAD +L +GF D+E I A+P+ RQT+LFSAT+P+
Sbjct: 136 LCDHLRRDEKV---LATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQ 192
Query: 478 EVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
+R I LK D + + + +T + Q HL+ D
Sbjct: 193 SIRAIAERHLK-DPKHVKI--QSKTQTVTAIEQAHLLVHAD 230
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 113/323 (34%), Positives = 177/323 (54%)
Query: 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVA 413
+ LV+ PTRELA Q + + L SIGVQ V++GG ++ Q A I++A
Sbjct: 93 LFALVLTPTRELAFQISEQFEAL---GSSIGVQCAVIVGGID-SMSQSLALAKKPHIVIA 148
Query: 414 TPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSA 473
TPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI+ +P+ R+T LFSA
Sbjct: 149 TPGRLIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 206
Query: 474 TVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVA 533
T+ ++V+++ ALK + +T E+++Q +L P L +L E +A
Sbjct: 207 TMTKKVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE-LA 262
Query: 534 DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593
N ++FC+T T+ A LL L +H + QS R ++F+ IL+
Sbjct: 263 GN---SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653
+DV++RG+D P V +V+ +P+ + YIHR+GRT R G+ G+ I + ++ I+
Sbjct: 320 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 654 DLPILKAPV-PSVDPDTKKKVER 675
L K PV P+ D + ER
Sbjct: 380 HLIGKKLPVFPTQDEEVMMLTER 402
Score = 373 (136.4 bits), Expect = 1.0e-33, P = 1.0e-33
Identities = 99/305 (32%), Positives = 162/305 (53%)
Query: 256 DKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLK 315
D+E S A+ + + + + F ++ + + G+ K T +Q +P+ L+
Sbjct: 4 DEEPDSPSGALQTAAEEEETKT---FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQ 60
Query: 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375
G+D++ A+TG+GKT AF LP + ++++P QR + LV+ PTRELA Q + +
Sbjct: 61 GRDIIGLAETGSGKTGAFALPILNALLETP-----QR---LFALVLTPTRELAFQISEQF 112
Query: 376 STLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLM 433
L SIGVQ V++GG ++ Q A I++ATPGRL DH+ENT GF L
Sbjct: 113 EAL---GSSIGVQCAVIVGGID-SMSQSLALAKKPHIVIATPGRLIDHLENTKGF--NLR 166
Query: 434 GVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEF 493
+K LV+DEAD +L+M F +++KI+ +P+ R+T LFSAT+ ++V+++ ALK
Sbjct: 167 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNP--- 223
Query: 494 INTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMV 553
+ +T E+++Q +L P L +L E +A N C T ++
Sbjct: 224 VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE-LAGNSFMIFCSTCNNTQRTALL 282
Query: 554 ADLLG 558
LG
Sbjct: 283 LRNLG 287
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 113/323 (34%), Positives = 177/323 (54%)
Query: 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVA 413
+ LV+ PTRELA Q + + L SIGVQ V++GG ++ Q A I++A
Sbjct: 95 LFALVLTPTRELAFQISEQFEAL---GSSIGVQCAVIVGGID-SMSQSLALAKKPHIVIA 150
Query: 414 TPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSA 473
TPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI+ +P+ R+T LFSA
Sbjct: 151 TPGRLIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 208
Query: 474 TVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVA 533
T+ ++V+++ ALK + +T E+++Q +L P L +L E +A
Sbjct: 209 TMTKKVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE-LA 264
Query: 534 DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593
N ++FC+T T+ A LL L +H + QS R ++F+ IL+
Sbjct: 265 GN---SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 321
Query: 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653
+DV++RG+D P V +V+ +P+ + YIHR+GRT R G+ G+ I + ++ I+
Sbjct: 322 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 381
Query: 654 DLPILKAPV-PSVDPDTKKKVER 675
L K PV P+ D + ER
Sbjct: 382 HLIGKKLPVFPTQDDEVMMLTER 404
Score = 371 (135.7 bits), Expect = 1.7e-33, P = 1.7e-33
Identities = 95/280 (33%), Positives = 152/280 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++ + + G+ K T +Q +P+ L+G+D++ A+TG+GKT AF LP +
Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 87
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
++++P QR + LV+ PTRELA Q + + L SIGVQ V++GG ++
Sbjct: 88 LLETP-----QR---LFALVLTPTRELAFQISEQFEAL---GSSIGVQCAVIVGGID-SM 135
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
Q A I++ATPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI
Sbjct: 136 SQSLALAKKPHIVIATPGRLIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKI 193
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
+ +P+ R+T LFSAT+ ++V+++ ALK + +T E+++Q +L P
Sbjct: 194 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYLFIPSK 250
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG 558
L +L E +A N C T ++ LG
Sbjct: 251 FKDTYLVYILNE-LAGNSFMIFCSTCNNTQRTALLLRNLG 289
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 113/323 (34%), Positives = 177/323 (54%)
Query: 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVA 413
+ LV+ PTRELA Q + + L SIGVQ V++GG ++ Q A I++A
Sbjct: 93 LFALVLTPTRELAFQISEQFEAL---GSSIGVQCAVIVGGID-SMSQSLALAKKPHIVIA 148
Query: 414 TPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSA 473
TPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI+ +P+ R+T LFSA
Sbjct: 149 TPGRLIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 206
Query: 474 TVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVA 533
T+ ++V+++ ALK + +T E+++Q +L P L +L E +A
Sbjct: 207 TMTKKVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE-LA 262
Query: 534 DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593
N ++FC+T T+ A LL L +H + QS R ++F+ IL+
Sbjct: 263 GN---SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653
+DV++RG+D P V +V+ +P+ + YIHR+GRT R G+ G+ I + ++ I+
Sbjct: 320 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 654 DLPILKAPV-PSVDPDTKKKVER 675
L K PV P+ D + ER
Sbjct: 380 HLIGKKLPVFPTQDEEVMMLTER 402
Score = 371 (135.7 bits), Expect = 1.7e-33, P = 1.7e-33
Identities = 95/280 (33%), Positives = 152/280 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++ + + G+ K T +Q +P+ L+G+D++ A+TG+GKT AF LP +
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
++++P QR + LV+ PTRELA Q + + L SIGVQ V++GG ++
Sbjct: 86 LLETP-----QR---LFALVLTPTRELAFQISEQFEAL---GSSIGVQCAVIVGGID-SM 133
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
Q A I++ATPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI
Sbjct: 134 SQSLALAKKPHIVIATPGRLIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKI 191
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
+ +P+ R+T LFSAT+ ++V+++ ALK + +T E+++Q +L P
Sbjct: 192 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYLFIPSK 248
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG 558
L +L E +A N C T ++ LG
Sbjct: 249 FKDTYLVYILNE-LAGNSFMIFCSTCNNTQRTALLLRNLG 287
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 473 (171.6 bits), Expect = 2.3e-43, P = 2.3e-43
Identities = 135/406 (33%), Positives = 208/406 (51%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F SIS ++K +K G + +Q T + +GKD++A+A+TGTGKT +F +P
Sbjct: 133 EGAFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 192
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE + ++ + R P +LVL PTRELA Q A + + + + V GGT
Sbjct: 193 IERLQRNQETIKKSRSPKVLVLA--PTRELANQVAKDFKDITR---KLSVACFYGGTSYQ 247
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +++ N ILV TPGR++DH+++ ++L V VLDE D +LD+GF + +E
Sbjct: 248 SQINQIR-NGIDILVGTPGRIKDHLQSGRLDLSKLRHV---VLDEVDQMLDLGFAEQVED 303
Query: 458 IIAAVPK-----QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
II K QTLLFSAT P+ V ++ +K +E ++ V + +++ V H
Sbjct: 304 IIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE--H 361
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHS 569
L + H+ ++ + V E + ++FC T VT M + +K N + +H
Sbjct: 362 LA--IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN--PHIKQNAQCLHG 417
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
QS R FR+ +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTG
Sbjct: 418 DIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG 477
Query: 630 RKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKK 672
R G+ G + P E L ++ + + VPS K K
Sbjct: 478 RAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 523
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 469 (170.2 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 135/406 (33%), Positives = 206/406 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + +GKD++A+A+TGTGKT +F +P
Sbjct: 137 EGAFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 196
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE + ++ + R P +LVL PTRELA Q A + + + + V GGT
Sbjct: 197 IERLQRNQETIKKSRSPKVLVLA--PTRELANQVAKDFKDITR---KLSVACFYGGTSYQ 251
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ ++ N ILV TPGR++DH+++ ++L V VLDE D +LD+GF + +E
Sbjct: 252 SQINHIR-NGIDILVGTPGRIKDHLQSGRLDLSKLRHV---VLDEVDQMLDLGFAEQVED 307
Query: 458 IIAAVPK-----QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
II K QTLLFSAT P+ V ++ +K +E ++ V + +++ V H
Sbjct: 308 IIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE--H 365
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHS 569
L + H+ ++ + V E + ++FC T VT M + +K N + +H
Sbjct: 366 LA--IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN--PHIKQNAQCLHG 421
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
QS R FR+ +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTG
Sbjct: 422 DIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG 481
Query: 630 RKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKK 672
R G+ G I P E L ++ + + VPS K K
Sbjct: 482 RAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Score = 39 (18.8 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 103 DDEAELSDWVSDLRTDSFHSNKRFSKDDDVSDFRKGSGR 141
D E ++ +SD + S S ++ + D+ ++ K S R
Sbjct: 73 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKR 111
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 474 (171.9 bits), Expect = 3.1e-43, P = 3.1e-43
Identities = 124/391 (31%), Positives = 202/391 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + ++S L+G+ + T +Q+ T+PV L GKD++ A TG+GKT AF++P +E
Sbjct: 300 FQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 359
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++ P ++ P V ++ PTRELA Q A+ L Y Q+V GG L ++
Sbjct: 360 LLFRP-----RKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLV-GGFSLREQE 413
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++ P +++ATPGR DH+ N+A F + ++LVLDEAD +L+ GF ++ +I+
Sbjct: 414 NVLKKRP-DVIIATPGRFIDHMRNSASFTVDTL--EILVLDEADRMLEDGFADELNEILT 470
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+PK RQT+LFSAT+ + V ++ + L R + ++ + T V++ + P
Sbjct: 471 TIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVT--LVQEFVRLRPGRED 528
Query: 521 FPLLYVL-LREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
L Y+L L + V +V+VF V + G L L E+H Q R +
Sbjct: 529 KRLGYLLHLCKEVYTG---RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKS 585
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
+ FR L+ +D+++RG+D V VI P E Y+HR+GRT R G+ G+
Sbjct: 586 VESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACT 645
Query: 640 LLA-PWEEFFLSTIKDLPILKAPVPS--VDP 667
+ A P + + +K A + S VDP
Sbjct: 646 IAAEPDRKVVKAAVKAGKAQGAKIVSRVVDP 676
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 456 (165.6 bits), Expect = 4.0e-43, P = 4.0e-43
Identities = 121/374 (32%), Positives = 195/374 (52%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E+ F +++ + + K T +Q A +P +LKG+D + ++TG+GKT+AF +P
Sbjct: 94 ENSFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPI 153
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
++ + P I +++ PTRELA Q + + S+ ++ GGT +
Sbjct: 154 LQKWAEDPF--------GIFAVILTPTRELALQIFEQIKAI-SAPQSMKPVLITGGTDMR 204
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFAT--RLMGVKVLVLDEADHLLDMG---FR 452
+ + P ++VATPGRL DHI NT+G T L V+++VLDEAD LL G
Sbjct: 205 SQAIELAGRP-HVVVATPGRLADHI-NTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSML 262
Query: 453 KDIEKIIAAVP--KQRQTLLFSATVPEEVRQICHIALK--RDHEFINTVEEGSEET-HEQ 507
D+E ++ +P QRQTLLF+AT+ EVR + + + F+ + +++T
Sbjct: 263 PDVETCLSFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPT 322
Query: 508 VRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREI 567
+R ++ PL L+VLL N +VF T ++ LL L V +
Sbjct: 323 LRTTYVQVPLTHREAFLHVLLSTE--SNITKSAIVFTNTTKSADLLERLLRSLGHRVTSL 380
Query: 568 HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGR 627
HS PQS R FR S +LV +DV++RG+D P V+LV+ +P + + Y+HR+GR
Sbjct: 381 HSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGR 440
Query: 628 TGRKGKEGQGILLL 641
T R G+ G+ + L+
Sbjct: 441 TARAGRTGEAVTLV 454
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 469 (170.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 141/439 (32%), Positives = 224/439 (51%)
Query: 257 KENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG 316
+E GG ++D +S F ++S LK I G+++ T +Q+A +PV L G
Sbjct: 195 QEAGGF---FEDASQYDENLS---FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLG 248
Query: 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL-VLVICPTRELATQAATEA 375
KD+ A A TGTGKT AF LP +E +I P R+ P+ VLV+ PTREL Q +
Sbjct: 249 KDICACAATGTGKTAAFALPVLERLIYKP------RQAPVTRVLVLVPTRELGIQVHSVT 302
Query: 376 STLLKYHPSIGVQV---VIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRL 432
L + + + GG + ++ ++A IL+ATPGRL DH+ N F L
Sbjct: 303 KQLAQSSLCVITTISGLFAGGLDVKSQEAALRAAXPDILIATPGRLIDHLHNCPSF--HL 360
Query: 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHE 492
++VL+LDEAD +LD F + +++II RQT+LFSAT+ +EV+ + ++LK
Sbjct: 361 SSIEVLILDEADRMLDEYFEEQMKEIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVR 420
Query: 493 -FINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTR 551
F+N+ + + ++ ++ D ++ LL D+ V++F T
Sbjct: 421 IFVNSNTDVAPFLRQEFIRIRPNREGDRE-AIVAALLMRTFTDH----VMLFTQTKKQAH 475
Query: 552 MVADLLGELKLNVREIHSRKPQSYRT-RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI 610
+ LLG + L V E+H Q+ R F+ + ILV +DV+ARG+D V VI
Sbjct: 476 RMHILLGLMGLQVGELHGNLSQTQRXLEALWRFKDEQIDILVATDVAARGLDIEGVKTVI 535
Query: 611 QVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTK 670
+P+ + Y+HR+GRT R G+ G+ + LL + + +K IL V D
Sbjct: 536 NFTMPNTIKHYVHRVGRTARAGRAGRSVSLLKEIVKAAKAPVK-ARILPQDVILKFRDKI 594
Query: 671 KKVER---ALSHVEMKNKE 686
+K+E+ A+ +E + KE
Sbjct: 595 EKMEKDVYAVLQLEAEEKE 613
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 437 (158.9 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 120/349 (34%), Positives = 181/349 (51%)
Query: 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI-EVVIKSPPVDRDQRRPPIL 357
+EK + +Q T P LL G+D++ AKTG+GKT+AF +P+I V+ K+ + ++
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 358 VLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVATP 415
LV+ PTRELA Q + L + G++ V GG+ + +++ I++ TP
Sbjct: 194 CLVLSPTRELAVQIS---DVLREAGEPCGLKSICVYGGSSKGPQISAIRSG-VDIVIGTP 249
Query: 416 GRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475
GRLRD IE+ RL V +VLDEAD +LDMGF + + I++ K RQ ++FSAT
Sbjct: 250 GRLRDLIESNV---LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATW 306
Query: 476 PEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF-PLLYVLLREHVAD 534
P +V ++ + D I + GS + M ++ LD + L E
Sbjct: 307 PLDVHKLAQEFM--DPNPIKVII-GSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHK 363
Query: 535 NPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594
+ + +VLVF + + L + IH K QS RTR F++ +LV +
Sbjct: 364 SQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVAT 423
Query: 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAP 643
DV+ARG+D PDV +VI P E Y+HR+GRTGR GK+G P
Sbjct: 424 DVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTP 472
Score = 40 (19.1 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLP 311
+ E +Q + ++ KG+++A Y + E+ LP
Sbjct: 90 LGEGESEQQKV-VVTGKGVEEAKYAALKTFAESNLP 124
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 471 (170.9 bits), Expect = 4.8e-43, P = 4.8e-43
Identities = 136/406 (33%), Positives = 206/406 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + +GKD++A+A+TGTGKT +F +P
Sbjct: 136 EGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE + ++ + R P +LVL PTRELA Q A + + K + V GGT
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLA--PTRELANQVAKDFKDITK---KLSVACFYGGTSYQ 250
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ ++ N ILV TPGR++DH+++ ++L V VLDE D +LD+GF + +E
Sbjct: 251 SQINHIR-NGIDILVGTPGRIKDHLQSGRLDLSKLRHV---VLDEVDQMLDLGFAEQVED 306
Query: 458 IIAAVPK-----QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
II K QTLLFSAT P+ V ++ +K +E ++ V + +++ V H
Sbjct: 307 IIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE--H 364
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHS 569
L + H+ ++ + V E + ++FC T VT M + +K N + +H
Sbjct: 365 LA--IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN--PHIKQNAQCLHG 420
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
QS R FR+ +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTG
Sbjct: 421 DIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG 480
Query: 630 RKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKK 672
R G+ G I P E L ++ + + VPS K K
Sbjct: 481 RAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 455 (165.2 bits), Expect = 5.4e-43, P = 5.4e-43
Identities = 123/361 (34%), Positives = 185/361 (51%)
Query: 305 VQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR-DQRRPPILVLVICP 363
+ EAT P+ K V+ K G+ ++ V+ P +++ D + L++ P
Sbjct: 25 ITEAT-PIQEKAIPVILSGKDIIGQAKTGTGKTLAFVL--PILEKIDPESSDVQALIVAP 81
Query: 364 TRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIE 423
TRELA Q TE +L I V + GG +A + ++++ N I+VATPGRL DHI
Sbjct: 82 TRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT-HIVVATPGRLLDHIR 140
Query: 424 NTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQIC 483
L + +VLDEAD +L GF DIE I+ P +QT+LFSAT+P++++++
Sbjct: 141 RET---IDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLA 197
Query: 484 HIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFP--LLYVLLREHVADNPEYKVL 541
KR + ++ SEE + ++ D P L +V+ R D P + +
Sbjct: 198 ----KRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDR----DQP-FLAV 248
Query: 542 VFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGV 601
+FC T + + D L L N E+H PQ+ R RV FR++K L+ +DV+ARG+
Sbjct: 249 IFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGL 308
Query: 602 DYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAP 661
D VT V +P D E YIHR+GRTGR G G I +A +E L I+ L AP
Sbjct: 309 DVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKT--LGAP 366
Query: 662 V 662
+
Sbjct: 367 I 367
Score = 369 (135.0 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 90/255 (35%), Positives = 141/255 (55%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + IS +++ G + T +QE +PV+L GKD++ +AKTGTGKT+AF+LP +E
Sbjct: 7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE- 65
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
K P D + L++ PTRELA Q TE +L I V + GG +A +
Sbjct: 66 --KIDPESSD-----VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQL 118
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++++ N I+VATPGRL DHI L + +VLDEAD +L GF DIE I+
Sbjct: 119 RKLKGNT-HIVVATPGRLLDHIRRET---IDLSNLSTIVLDEADQMLYFGFLYDIEDILD 174
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
P +QT+LFSAT+P++++++ I ++ + ++T+E+ ET ++ +
Sbjct: 175 ETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDA 234
Query: 513 LVAPLDLHFPLLYVL 527
L +D P L V+
Sbjct: 235 LRFVMDRDQPFLAVI 249
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 455 (165.2 bits), Expect = 5.4e-43, P = 5.4e-43
Identities = 123/361 (34%), Positives = 185/361 (51%)
Query: 305 VQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR-DQRRPPILVLVICP 363
+ EAT P+ K V+ K G+ ++ V+ P +++ D + L++ P
Sbjct: 25 ITEAT-PIQEKAIPVILSGKDIIGQAKTGTGKTLAFVL--PILEKIDPESSDVQALIVAP 81
Query: 364 TRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIE 423
TRELA Q TE +L I V + GG +A + ++++ N I+VATPGRL DHI
Sbjct: 82 TRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT-HIVVATPGRLLDHIR 140
Query: 424 NTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQIC 483
L + +VLDEAD +L GF DIE I+ P +QT+LFSAT+P++++++
Sbjct: 141 RET---IDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLA 197
Query: 484 HIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFP--LLYVLLREHVADNPEYKVL 541
KR + ++ SEE + ++ D P L +V+ R D P + +
Sbjct: 198 ----KRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDR----DQP-FLAV 248
Query: 542 VFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGV 601
+FC T + + D L L N E+H PQ+ R RV FR++K L+ +DV+ARG+
Sbjct: 249 IFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGL 308
Query: 602 DYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAP 661
D VT V +P D E YIHR+GRTGR G G I +A +E L I+ L AP
Sbjct: 309 DVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKT--LGAP 366
Query: 662 V 662
+
Sbjct: 367 I 367
Score = 369 (135.0 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 90/255 (35%), Positives = 141/255 (55%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + IS +++ G + T +QE +PV+L GKD++ +AKTGTGKT+AF+LP +E
Sbjct: 7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE- 65
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
K P D + L++ PTRELA Q TE +L I V + GG +A +
Sbjct: 66 --KIDPESSD-----VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQL 118
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++++ N I+VATPGRL DHI L + +VLDEAD +L GF DIE I+
Sbjct: 119 RKLKGNT-HIVVATPGRLLDHIRRET---IDLSNLSTIVLDEADQMLYFGFLYDIEDILD 174
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
P +QT+LFSAT+P++++++ I ++ + ++T+E+ ET ++ +
Sbjct: 175 ETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDA 234
Query: 513 LVAPLDLHFPLLYVL 527
L +D P L V+
Sbjct: 235 LRFVMDRDQPFLAVI 249
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 455 (165.2 bits), Expect = 5.4e-43, P = 5.4e-43
Identities = 121/379 (31%), Positives = 189/379 (49%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F IS + +K + T +QE + +L+G++ + AKTG+GKT AF LP IE
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
K P I L++ PTRELA Q E L + ++ +++GG + +
Sbjct: 69 WSKDPS--------GIFALILTPTRELAIQI-DEQFAALGANLNLKHALIVGGMDMIRQS 119
Query: 401 KRMQANPCQILVATPGRLRDHIE-NTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ P ++VATPGRL D I N L +K LV+DEAD LL F D++
Sbjct: 120 IDLSKRP-HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCF 178
Query: 460 AAVP--KQRQTLLFSATVPEEVRQICHIALKRDHE--FINTVEEGSEETHEQVRQMHLVA 515
+ +P + RQTLLF+ATV + +RQ+ + K + ++ VE + ++Q ++
Sbjct: 179 SVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFV 238
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
+ L LL + +N + ++F ++ +L L+L V E+HS Q
Sbjct: 239 SSQVREAYLVHLLT--IPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRE 296
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R FR ILV +DV++RG+D P V LVI LP D + YIHR+GRT R G+ G
Sbjct: 297 RINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSG 356
Query: 636 QGILLLAPWEEFFLSTIKD 654
+ I ++ + + I+D
Sbjct: 357 ESISIVTERDVDLVHAIED 375
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 455 (165.2 bits), Expect = 5.4e-43, P = 5.4e-43
Identities = 127/413 (30%), Positives = 207/413 (50%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F +S + ++ + T +Q+A +P +L+G+D + AKTG+GKT+AF P +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ P + +V+ PTRELA Q A E T L +I V V++GG + +
Sbjct: 64 WSEDPS--------GMFGVVLTPTRELAMQIA-EQFTALGSSMNIRVSVIVGGESIVQQA 114
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATR-LMGVKVLVLDEADHLLDMGFRKDIEKII 459
+Q P ++ATPGRL HI ++ LM K LVLDEAD LL F + I
Sbjct: 115 LDLQRKP-HFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCI 173
Query: 460 AAVPKQ--RQTLLFSATVPEEVRQICHIALKRDHE--FINTVEEGSEETHEQVRQM-HLV 514
+A+P + RQTLLF+AT+ ++V+ + + +++ F VE ++ +++
Sbjct: 174 SALPPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYIL 233
Query: 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQS 574
P + LY LL +N ++F M ++ L +L++ V +HS+ PQ
Sbjct: 234 VPEHVKEAYLYQLLTCEEYENKT--AIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQ 291
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
RT FR + IL+ +DV++RG+D P V LV+ +PSD + +IHR GRT R G+
Sbjct: 292 ERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRI 351
Query: 635 GQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEA 687
G I + + + I+D K + DT + +AL+ V +E+
Sbjct: 352 GDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAV-IRKALTKVTKAKRES 403
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 468 (169.8 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 135/406 (33%), Positives = 206/406 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + +GKD++A+A+TGTGKT +F +P
Sbjct: 136 EGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE + ++ + R P +LVL PTRELA Q A + + + + V GGT
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLA--PTRELANQVAKDFKDITR---KLSVACFYGGTSYQ 250
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ ++ N ILV TPGR++DH+++ ++L V VLDE D +LD+GF + +E
Sbjct: 251 SQINHIR-NGIDILVGTPGRIKDHLQSGRLDLSKLRHV---VLDEVDQMLDLGFAEQVED 306
Query: 458 IIAAVPK-----QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
II K QTLLFSAT P+ V ++ +K +E ++ V + +++ V H
Sbjct: 307 IIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE--H 364
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHS 569
L + H+ ++ + V E + ++FC T VT M + +K N + +H
Sbjct: 365 LA--IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN--PHIKQNAQCLHG 420
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
QS R FR+ +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTG
Sbjct: 421 DIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG 480
Query: 630 RKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKK 672
R G+ G I P E L ++ + + VPS K K
Sbjct: 481 RAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
Score = 37 (18.1 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 91 RAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKRFSKDDDVSDFRKGSGR 141
+A + + + L D E + +SD + S S ++ + D+ ++ K S R
Sbjct: 60 KAKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKR 110
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 465 (168.7 bits), Expect = 8.5e-43, P = 8.5e-43
Identities = 132/410 (32%), Positives = 209/410 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 65 EGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 124
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE ++ +R + R P VLV+ PTRELA Q + + S + K + V GGT
Sbjct: 125 IEK-LQGGLQERKRGRAP-QVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYG 179
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +RM++ ILV TPGR++DH++N T+L K +VLDE D +LDMGF +E+
Sbjct: 180 GQIERMRSG-IDILVGTPGRIKDHLQNGKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 235
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I+ K+ QTLLFSAT P V + +K ++ ++ + G + + H
Sbjct: 236 ILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYKQVDLI--GKKTQKAAITVEH 293
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSR 570
L + H+ ++ + V + + ++FC T + ++ +K + + +H
Sbjct: 294 LA--IKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC-IKQDAQSLHGD 350
Query: 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR 630
PQ R FR +LV ++V+ARG+D P+V LV+Q P D E YIHR GRTGR
Sbjct: 351 IPQKQREITLKGFRNDNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGR 410
Query: 631 KGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVERAL 677
G+ G I EE+ L+ ++ + + VPS K + A+
Sbjct: 411 AGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 460
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 466 (169.1 bits), Expect = 9.2e-43, P = 9.2e-43
Identities = 136/401 (33%), Positives = 205/401 (51%)
Query: 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI-EVVIKS 344
+ L ++ I+ + + K T VQ+ ++P++ G+D++A A+TG+GKT FL P + E +K
Sbjct: 193 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 252
Query: 345 P-PVDRDQ-----RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
P PV + +LV+ PTREL +Q E S Y + VV GG +
Sbjct: 253 PAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEE-SKKFSYRSWVRACVVYGGADIGQ 311
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ + M C +LVATPGRL+D ++ G + L ++ LVLDEAD +LDMGF I I
Sbjct: 312 QMRNMDRG-CDLLVATPGRLKDLLDR--GKVS-LANIRYLVLDEADRMLDMGFEPQIRYI 367
Query: 459 IAA--VP--KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514
+ +P K RQTL+FSAT P +++ + LK D+ F++ GS T E + Q L
Sbjct: 368 VEECDMPAVKDRQTLMFSATFPRDIQMLARDFLK-DYVFLSVGRVGS--TSENITQKILY 424
Query: 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQS 574
D ++ LL + N +VF T + +AD L + IH + Q
Sbjct: 425 VEDDEKKSVILDLL----SANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQY 480
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
R + F+ ILV + V+ARG+D P+V+ VI LPSD + Y+HR+GRTGR G
Sbjct: 481 EREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNV 540
Query: 635 GQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVER 675
G + A + + +K L L + PD K+ R
Sbjct: 541 G---IATAFFNRNNKNVVKGLIELLSEANQEVPDFLTKIAR 578
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 453 (164.5 bits), Expect = 9.2e-43, P = 9.2e-43
Identities = 111/323 (34%), Positives = 176/323 (54%)
Query: 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVA 413
+ LV+ PTRELA Q + + L SIGVQ V++GG ++ Q A I++A
Sbjct: 93 LFALVLTPTRELAFQISEQFEAL---GSSIGVQSAVIVGGID-SMSQSLALAKKPHIIIA 148
Query: 414 TPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSA 473
TPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI+ +P+ R+T LFSA
Sbjct: 149 TPGRLIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 206
Query: 474 TVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVA 533
T+ ++V+++ ALK + +T E+++Q ++ P L +L E +A
Sbjct: 207 TMTKKVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNE-LA 262
Query: 534 DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593
N ++FC+T T+ A LL L +H + QS R ++F+ IL+
Sbjct: 263 GN---SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653
+DV++RG+D P V +V+ +P+ + YIHR+GRT R G+ G+ I + ++ I+
Sbjct: 320 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 654 DLPILKAP-VPSVDPDTKKKVER 675
L K P P+ D + ER
Sbjct: 380 HLIGKKLPGFPTQDDEVMMLTER 402
Score = 370 (135.3 bits), Expect = 2.1e-33, P = 2.1e-33
Identities = 94/280 (33%), Positives = 152/280 (54%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++ + + G+ K T +Q +P+ L+G+D++ A+TG+GKT AF LP +
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
++++P QR + LV+ PTRELA Q + + L SIGVQ V++GG ++
Sbjct: 86 LLETP-----QR---LFALVLTPTRELAFQISEQFEAL---GSSIGVQSAVIVGGID-SM 133
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
Q A I++ATPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI
Sbjct: 134 SQSLALAKKPHIIIATPGRLIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKI 191
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518
+ +P+ R+T LFSAT+ ++V+++ ALK + +T E+++Q ++ P
Sbjct: 192 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYIFIPSK 248
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG 558
L +L E +A N C T ++ LG
Sbjct: 249 FKDTYLVYILNE-LAGNSFMIFCSTCNNTQRTALLLRNLG 287
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 453 (164.5 bits), Expect = 9.2e-43, P = 9.2e-43
Identities = 125/413 (30%), Positives = 210/413 (50%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F+ + L+ +K G+ T +Q+ TLP L+ +D+LA+A TGTGKT +FLLP+++
Sbjct: 2 QFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+I P Q R VL++ PTRELA+Q A L + + ++ GG A +
Sbjct: 62 HLIDFPRRYSGQAR----VLILTPTRELASQIHRYACHLAT-DQGLNIAIITGGVPYAPQ 116
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
++ ++ N ILVATPGRL ++++ F+ V +L++DEAD +LDMGF ++ I
Sbjct: 117 EEALKGN-IDILVATPGRLMEYLDK-GKFSAE--SVDILIIDEADRMLDMGFSAVVKAIA 172
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQ-MHLVAPLD 518
++Q +LFSAT+ E + A + ++ I + + ++ Q +HL D
Sbjct: 173 LEAQGRKQNMLFSATL--EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKD 230
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
F LL LL++ + +VF T V + L + + + Q R +
Sbjct: 231 HKFALLCHLLKQEDVK----RAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQ 286
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
F K + +L+ +DV+ARG+D D++ VI +P + YIHR+GRTGR G +G I
Sbjct: 287 ALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346
Query: 639 LLLAPWEEFFLSTIK---DLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAA 688
L + + I+ + P+ + + + P K+ ++K KEAA
Sbjct: 347 SLAEAHDMRIVGKIERYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKAKEAA 399
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 453 (164.5 bits), Expect = 9.2e-43, P = 9.2e-43
Identities = 125/413 (30%), Positives = 210/413 (50%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+F+ + L+ +K G+ T +Q+ TLP L+ +D+LA+A TGTGKT +FLLP+++
Sbjct: 2 QFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+I P Q R VL++ PTRELA+Q A L + + ++ GG A +
Sbjct: 62 HLIDFPRRYSGQAR----VLILTPTRELASQIHRYACHLAT-DQGLNIAIITGGVPYAPQ 116
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
++ ++ N ILVATPGRL ++++ F+ V +L++DEAD +LDMGF ++ I
Sbjct: 117 EEALKGN-IDILVATPGRLMEYLDK-GKFSAE--SVDILIIDEADRMLDMGFSAVVKAIA 172
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQ-MHLVAPLD 518
++Q +LFSAT+ E + A + ++ I + + ++ Q +HL D
Sbjct: 173 LEAQGRKQNMLFSATL--EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKD 230
Query: 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
F LL LL++ + +VF T V + L + + + Q R +
Sbjct: 231 HKFALLCHLLKQEDVK----RAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQ 286
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
F K + +L+ +DV+ARG+D D++ VI +P + YIHR+GRTGR G +G I
Sbjct: 287 ALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346
Query: 639 LLLAPWEEFFLSTIK---DLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAA 688
L + + I+ + P+ + + + P K+ ++K KEAA
Sbjct: 347 SLAEAHDMRIVGKIERYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKAKEAA 399
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 452 (164.2 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 133/416 (31%), Positives = 212/416 (50%)
Query: 255 LDKENGGMSVAISSPGKHDSFMSESRFDQCSI-SALSLKGIKDAGYEKMTIVQEATLPVL 313
+DK + + P S FDQ + SA++ K K ++K T +Q + P L
Sbjct: 132 IDKFLSDNEITVEDPSS-SSLRPILSFDQVQLTSAITSKLSK---FDKPTPIQSVSWPFL 187
Query: 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373
L GKDV+ A+TG+GKT AF +P+I +I + + VL I PTRELA Q
Sbjct: 188 LSGKDVIGVAETGSGKTFAFGVPAINNIITTG------NTKTLSVLCISPTRELALQIY- 240
Query: 374 EASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATR 431
L++ GV V GG ++ + + + ++VATPGRL D I + G A
Sbjct: 241 --DNLIELTADSGVNCVAVYGG--VSKDDQIRKIKTANVVVATPGRLVDLIND--G-AIN 293
Query: 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK-QRQTLLFSATVPEEVRQICHIALKRD 490
L V LVLDEAD +L+ GF +DI+ II+ +RQTL+F+AT P+EVR++ + +
Sbjct: 294 LGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSP 353
Query: 491 HEFINTVEEGSE-ETHEQVRQM-HLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAM 548
+ TV + E ++++ Q+ ++ D L+ +L + + ++ + K+L+F
Sbjct: 354 VKV--TVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKK 411
Query: 549 VTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTL 608
+ + L + +V IH Q RT F+ + +L+ +DV+ARG+D P+V +
Sbjct: 412 EASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKV 471
Query: 609 VIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD-LPILKAPVP 663
VI + P E Y+HR+GRTGR G +G L E+ + + L PVP
Sbjct: 472 VINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVP 527
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 452 (164.2 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 125/373 (33%), Positives = 198/373 (53%)
Query: 281 FDQCSISALSLKG-IKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS-- 337
F+Q S S+ G I+ G+EK + +Q P+LL G+D + ++TG+GKT+AFLLP+
Sbjct: 85 FEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALL 144
Query: 338 -IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396
I+ + + ++++P VLV+ PTRELA Q E Y+ V + GG+R
Sbjct: 145 HIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKY-SYNGYKSVCLYGGGSRP 203
Query: 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456
EQ +I++ATPGRL D + N + L V +VLDEAD +LDMGF I
Sbjct: 204 --EQVEACRGGVEIVIATPGRLTD-LSNDGVIS--LASVTYVVLDEADRMLDMGFEVAIR 258
Query: 457 KIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETH-EQVRQMHLVA 515
+I+ + R L SAT PE VR++ K E + V + T + V Q
Sbjct: 259 RILFEIRPDRLVALTSATWPEGVRKLTD---KYTKEAVMAVNGSLDLTSCKSVTQFFEFV 315
Query: 516 PLDLHFPLLYVLLREHVADNPE-YKVLVFCTT-AMVTRMVADLLGELKLNVREIHSRKPQ 573
P D F + ++ A + + YK+++F + M + +D + +N + +H + Q
Sbjct: 316 PHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMK-GINSQGLHGGRSQ 374
Query: 574 SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633
S R + R + ILV +D+++RG+D PD+T V+ P D E+Y+HR+GRTGR G+
Sbjct: 375 SDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGR 434
Query: 634 EGQGILLLAPWEE 646
+G+ + L W +
Sbjct: 435 KGEAMSFLW-WND 446
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 469 (170.2 bits), Expect = 1.4e-42, P = 1.4e-42
Identities = 133/410 (32%), Positives = 209/410 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 181 EGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 240
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE ++ +R + R P VLV+ PTRELA Q + + S + K + V GGT
Sbjct: 241 IEK-LQGGLQERKRGRAP-QVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYG 295
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +RM++ ILV TPGR++DH++N T+L K +VLDE D +LDMGF +E+
Sbjct: 296 GQIERMRSG-IDILVGTPGRIKDHLQNGKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 351
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I+ K+ QTLLFSAT P V + +K +E ++ + G + + H
Sbjct: 352 ILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI--GKKTQKAAITVEH 409
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSR 570
L + H+ ++ + V + + ++FC T + ++ +K + + +H
Sbjct: 410 LA--IKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC-IKQDAQSLHGD 466
Query: 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR 630
PQ R FR +LV ++V+ARG+D P+V LV+Q P D E YIHR GRTGR
Sbjct: 467 IPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGR 526
Query: 631 KGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVERAL 677
G+ G I EE+ L+ ++ + + VPS K + A+
Sbjct: 527 AGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 576
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 458 (166.3 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 138/421 (32%), Positives = 213/421 (50%)
Query: 253 IGLDKENGGM-SVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLP 311
I DK + + V+ S+P K + M+ C +LS K + +GY K T VQ+ +P
Sbjct: 255 INFDKYDDILVDVSGSNPPK--AIMTFEEAGLCD--SLS-KNVSKSGYVKPTPVQKHGIP 309
Query: 312 VLLKGKDVLAKAKTGTGKTVAFLLPSIE-VVIKSPPVDRDQRRPPILVLVICPTRELATQ 370
++ G+D++A A+TG+GKT AFLLP ++ + + +++ PTREL Q
Sbjct: 310 IISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQ 369
Query: 371 AATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFAT 430
EA Y + VV GG + + C +L ATPGRL D I G
Sbjct: 370 IYLEARKFA-YGTCVRPVVVYGGINTGYTIREVLKG-CNVLCATPGRLHDLIGR--G-KI 424
Query: 431 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VP--KQRQTLLFSATVPEEVRQICHIA 486
L V+ LVLDEAD +LDMGF ++ K++A+ +P ++RQTL+FSAT PE+++++
Sbjct: 425 GLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADF 484
Query: 487 LKRDHEF--INTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFC 544
LK D+ F + V + + V Q+ + D L LLR A E + +VF
Sbjct: 485 LKVDYIFLAVGVVGGACSDVEQTVVQVDQYSKRDQ----LLELLR---ATGNE-RTMVFV 536
Query: 545 TTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP 604
T +A L + K++ IH + Q R + +FR +LV + V+ARG+D
Sbjct: 537 ETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIE 596
Query: 605 DVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL--STIKDLPILKAPV 662
V V+ +PS ++Y+HR+GRTGR G G+ + P + L S +K L + V
Sbjct: 597 QVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLSGAQQVV 656
Query: 663 P 663
P
Sbjct: 657 P 657
Score = 47 (21.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 196 EAGN--VGRKT--RFSNDDENDVGEERR-RGMSGIR 226
+ GN GR+ R +N++ ND G E R RG G R
Sbjct: 148 DGGNEDTGRRGFGRENNENGNDEGGEGRGRGRGGFR 183
Score = 45 (20.9 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 86 GRRGSRAGEIRGSKNLIDDEAELSDWVS-DLRT-------DSFHSNKRFSKDDDVSDFRK 137
GR G R G GS++ D+ W + R SF R ++D R+
Sbjct: 100 GRGGFRGGFRSGSRDENDENRNDDGWKGGESRGRGRGGFGGSFRGGFRDGGNEDTG--RR 157
Query: 138 GSGREN 143
G GREN
Sbjct: 158 GFGREN 163
Score = 44 (20.5 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 77 FRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSD 110
FR E G+RG G RG + + +D
Sbjct: 186 FRDGGGDESGKRGFGRGGFRGRNEEVFSKVTTAD 219
Score = 38 (18.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 208 NDDENDVGEERRRGMSG 224
NDD GE R RG G
Sbjct: 121 NDDGWKGGESRGRGRGG 137
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 351 (128.6 bits), Expect = 1.7e-42, Sum P(3) = 1.7e-42
Identities = 89/243 (36%), Positives = 141/243 (58%)
Query: 276 MSESRFDQCSISALSL-----KGIKDA-GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGK 329
+ E+ F IS L L K ++D ++T VQ+ T+P +L+GKDVL +++TG+GK
Sbjct: 319 VKETIFTGSKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGK 378
Query: 330 TVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQV 389
T+A+ LP +E++ K P R QR+ +L LVI PTREL Q L+K + I
Sbjct: 379 TLAYALPLVELLQKQQP--RIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGS 436
Query: 390 VIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM 449
++GG E+ R++ IL+ TPGRL DH+ +TA F +L ++ L+LDEAD LL++
Sbjct: 437 LLGGESRKSEKARLRKG-INILIGTPGRLVDHLLHTASF--KLTKLQFLILDEADRLLEL 493
Query: 450 GFRKDIEKIIAAVPKQR-----------QTLLFSATVPEEVRQICHIALKRDHEFINTVE 498
G+ +D+++++ A+ KQR Q +L SAT+ +V+Q+ + LK N+ E
Sbjct: 494 GYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDE 553
Query: 499 EGS 501
S
Sbjct: 554 AAS 556
Score = 163 (62.4 bits), Expect = 1.7e-42, Sum P(3) = 1.7e-42
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 566 EIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRL 625
++H Q+ R V FR +L+ +DV RG+D PD+ LV+Q P ++HR+
Sbjct: 683 KLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRV 742
Query: 626 GRTGRKGKEGQGILLLAPWEEFFL 649
GRT R G++G+ +L L P E F+
Sbjct: 743 GRTARAGRKGRAVLFLTPSEAQFV 766
Score = 60 (26.2 bits), Expect = 1.7e-42, Sum P(3) = 1.7e-42
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 506 EQVRQMHLVAPLDLHFPLLYVLLREHVADNP-EYKVLVFCTTAMVTRMVADLLGE 559
E ++ ++V P L L LL + V +P ++K +VF +T + D+L E
Sbjct: 595 ENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNE 649
Score = 39 (18.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 27/138 (19%), Positives = 56/138 (40%)
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
+E + K D+ P + +++ T L +Q A LK +P + + A
Sbjct: 503 VEAIDKQRAECEDKELPQLQRMLLSAT--LTSQVQQLAGLTLK-NP-LYIDNSDEAASAA 558
Query: 398 LEQKR-MQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456
L+ K Q + L+ L ++ E+ G + +++ + L + +
Sbjct: 559 LKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLA 618
Query: 457 KIIAAVPKQRQTLLFSAT 474
K + A PKQ + ++F +T
Sbjct: 619 KEVDASPKQFKAIVFMST 636
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 469 (170.2 bits), Expect = 2.0e-42, P = 2.0e-42
Identities = 133/410 (32%), Positives = 209/410 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + GKD++A+A+TGTGKT +F +P
Sbjct: 257 EGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 316
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE ++ +R + R P VLV+ PTRELA Q + + S + K + V GGT
Sbjct: 317 IEK-LQGGLQERKRGRAP-QVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYG 371
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ +RM++ ILV TPGR++DH++N T+L K +VLDE D +LDMGF +E+
Sbjct: 372 GQIERMRSG-IDILVGTPGRIKDHLQNGKLDLTKL---KHVVLDEVDQMLDMGFADQVEE 427
Query: 458 IIAAVPKQR-----QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I+ K+ QTLLFSAT P V + +K +E ++ + G + + H
Sbjct: 428 ILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI--GKKTQKAAITVEH 485
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSR 570
L + H+ ++ + V + + ++FC T + ++ +K + + +H
Sbjct: 486 LA--IKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTC-IKQDAQSLHGD 542
Query: 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR 630
PQ R FR +LV ++V+ARG+D P+V LV+Q P D E YIHR GRTGR
Sbjct: 543 IPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGR 602
Query: 631 KGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKKVERAL 677
G+ G I EE+ L+ ++ + + VPS K + A+
Sbjct: 603 AGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 465 (168.7 bits), Expect = 2.1e-42, P = 2.1e-42
Identities = 126/408 (30%), Positives = 211/408 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F++ ++ + + AGY K+T VQ+ ++P+++ G+D++A A+TG+GKT AFLLP +
Sbjct: 276 FEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSY 335
Query: 341 VIKSPPVDRD--QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
++ Q + P + +I PTREL Q +A Y + VV GG +
Sbjct: 336 MMNEGITASQYLQLQEPEAI-IIAPTRELINQIYLDARKF-SYGTCVRPVVVYGGIQPVH 393
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ ++ C IL ATPGRL D + ++L + LVLDEAD +LDMGF +IEK+
Sbjct: 394 AMRDVEKG-CNILCATPGRLLDIVSKEKIGLSKL---RYLVLDEADRMLDMGFAPEIEKL 449
Query: 459 IA--AVP--KQRQTLLFSATVPEEVRQICHIALKRDHEFI--NTVEEGSEETHEQVRQMH 512
+ +P ++RQTL+FSAT PEE+R++ LK +H F+ V + + V +M
Sbjct: 450 MTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMR 509
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
++ LL +L + + + ++F T +A L + K + IH +
Sbjct: 510 ENGKME---KLLEIL-----KSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDRE 561
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R +FR K ++V + V+ARG+D +V VI +P + ++Y+HR+GRTGR G
Sbjct: 562 QYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCG 621
Query: 633 KEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHV 680
G+ FF ++D ++ P+ + D ++V L +
Sbjct: 622 NTGKAT-------SFF--NVQDDHVIARPLVKILTDAHQEVPAWLEEI 660
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 450 (163.5 bits), Expect = 2.1e-42, P = 2.1e-42
Identities = 121/376 (32%), Positives = 202/376 (53%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F C + + +K AGYE T VQ +PV L G+DV+A A TG+GKTVAFLLP +
Sbjct: 172 FQHCRFPTVLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMR 231
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++S P L+L PTRELA Q +A L++ P++ +++GG L +
Sbjct: 232 ALQSESASPSC--PACLILT--PTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQL 287
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
R++ N +I++ TPGRL + ++ A +L V+ +V+DEAD +L MGF++ + I+
Sbjct: 288 HRLKHN-IKIVIGTPGRLLEILKQKA---VQLDHVRTVVVDEADTMLKMGFQQQVLDILE 343
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSE-ETHEQVRQMHLVAPLDL 519
VP+ QTLL SAT+P +Q+ A + H+ + T+ G + + VRQ+ L
Sbjct: 344 QVPEDHQTLLTSATIPTGTQQL---AERLTHDPV-TITIGQKNQPCANVRQIVLWVEEPS 399
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGE-LKLNVREIHSRKPQSYRTR 578
L+ +L + P V+VF + ++ + + + + LN IHS K Q R +
Sbjct: 400 KKKKLFEILNDEKLYQPP--VVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNK 457
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ + + +++++ + RG+D +V LVI +PS+ ++Y+H++GR GR G G I
Sbjct: 458 IVKGLLEGQFDVVISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAI 517
Query: 639 LLLAPWEE-FFLSTIK 653
+ + FL +K
Sbjct: 518 TFMNNNNKRLFLEMVK 533
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 449 (163.1 bits), Expect = 2.8e-42, P = 2.8e-42
Identities = 129/416 (31%), Positives = 210/416 (50%)
Query: 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLL 335
+S +F + + + + G+E T +Q +LPVLL+ KD+ +A+TGTGKT+AFL+
Sbjct: 6 LSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV 65
Query: 336 PSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT 394
+ ++ S P R +P +++ PTRELA Q A +A L K H + V +V GG
Sbjct: 66 ATFNHLLSSSIPEGRQLNQPRAIIMA--PTRELAIQIAKDAILLAK-HTRLKVGIVYGGE 122
Query: 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKD 454
+++K + IL+ T GR+ D++ G L ++ +VLDEAD + D+GF KD
Sbjct: 123 SYDVQRKVLDQG-VDILIGTTGRIIDYVRQ--GIIN-LNAIQAVVLDEADRMFDLGFIKD 178
Query: 455 IEKIIAAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I + +P QR +LFSAT+ +V+++ + + D + E E+T + +++
Sbjct: 179 IRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMN-DPVKVEIAPE--EKTSKNIKEEI 235
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ LL L+ E D PE K +VF T + L V + P
Sbjct: 236 FYPSQEDKMRLLLTLIEE---DWPE-KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVP 291
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R R+ ++F + + ILV +DV+ARG+ DV+ V LP D E Y+HR+GRTGR G
Sbjct: 292 QKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query: 633 KEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAA 688
+G + EE+ L+ + +P + D ++ S V++ K A
Sbjct: 352 NKGVSVSFAC--EEYALNLPAIETYINHSIPVSNYDRDALLDDIPSPVKIHRKHPA 405
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 449 (163.1 bits), Expect = 2.8e-42, P = 2.8e-42
Identities = 129/416 (31%), Positives = 210/416 (50%)
Query: 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLL 335
+S +F + + + + G+E T +Q +LPVLL+ KD+ +A+TGTGKT+AFL+
Sbjct: 6 LSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV 65
Query: 336 PSIEVVIKSP-PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT 394
+ ++ S P R +P +++ PTRELA Q A +A L K H + V +V GG
Sbjct: 66 ATFNHLLSSSIPEGRQLNQPRAIIMA--PTRELAIQIAKDAILLAK-HTRLKVGIVYGGE 122
Query: 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKD 454
+++K + IL+ T GR+ D++ G L ++ +VLDEAD + D+GF KD
Sbjct: 123 SYDVQRKVLDQG-VDILIGTTGRIIDYVRQ--GIIN-LNAIQAVVLDEADRMFDLGFIKD 178
Query: 455 IEKIIAAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I + +P QR +LFSAT+ +V+++ + + D + E E+T + +++
Sbjct: 179 IRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMN-DPVKVEIAPE--EKTSKNIKEEI 235
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572
+ LL L+ E D PE K +VF T + L V + P
Sbjct: 236 FYPSQEDKMRLLLTLIEE---DWPE-KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVP 291
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632
Q R R+ ++F + + ILV +DV+ARG+ DV+ V LP D E Y+HR+GRTGR G
Sbjct: 292 QKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query: 633 KEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAA 688
+G + EE+ L+ + +P + D ++ S V++ K A
Sbjct: 352 NKGVSVSFAC--EEYALNLPAIETYINHSIPVSNYDRDALLDDIPSPVKIHRKHPA 405
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 460 (167.0 bits), Expect = 2.9e-42, P = 2.9e-42
Identities = 129/356 (36%), Positives = 186/356 (52%)
Query: 288 ALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPV 347
AL+L I+ Y K T VQ +P+L G+D++A A+TG+GKT AF P I ++K +
Sbjct: 156 ALNLN-IQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHI 214
Query: 348 DRDQ--RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQA 405
+R + R L +++ PTRELA Q EA Y + V V GGT + + + ++
Sbjct: 215 ERPRGVRGVYPLAVILSPTRELACQIHDEARKF-SYQTGVKVVVAYGGTPVNQQIRELER 273
Query: 406 NPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV--- 462
ILVATPGRL D +E G + M V+ L LDEAD +LDMGF I KI+ +
Sbjct: 274 G-VDILVATPGRLNDLLER--GRVSLQM-VRFLALDEADRMLDMGFEPQIRKIVQQMDMP 329
Query: 463 -PKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF 521
P RQT+LFSAT P E++++ L ++ F+ GS T V+++ V D
Sbjct: 330 PPGVRQTMLFSATFPREIQRLASDFLS-NYIFLAVGRVGSS-TDLIVQRVEFVHDSDKRS 387
Query: 522 PLLYVL--LREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
L+ +L RE+ + LVF T + + L IH + Q R
Sbjct: 388 HLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVA 447
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
F+ + ILV +DV+ARG+D P V V+ LP+D + Y+HR+GRTGR G G
Sbjct: 448 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSG 503
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 465 (168.7 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 134/406 (33%), Positives = 206/406 (50%)
Query: 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPS 337
E F IS ++K +K G + +Q T + +GKD++A+A+TGTGKT +F +P
Sbjct: 136 EGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE + ++ + R P +LVL PTRELA Q A + + + + V GGT
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLA--PTRELANQVAKDFKDVTR---KLSVACFYGGTSYQ 250
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
+ ++ N ILV TPGR++DH+++ ++L V VLDE D +LD+GF + +E
Sbjct: 251 SQINHIR-NGIDILVGTPGRIKDHLQSGRLDLSKLRHV---VLDEVDQMLDLGFAEQVED 306
Query: 458 IIAAVPK-----QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
I+ K QTLLFSAT P+ V ++ +K +E ++ V + +++ V H
Sbjct: 307 ILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE--H 364
Query: 513 LVAPLDLHFPLLYVLLRE--HVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHS 569
L + H+ ++ + V E + ++FC T VT M + +K N + +H
Sbjct: 365 LA--IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN--PHIKQNAQCLHG 420
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629
QS R FR+ +LV ++V+ARG+D P+V LVIQ P D E YIHR GRTG
Sbjct: 421 DIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG 480
Query: 630 RKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKKK 672
R G+ G I P E L ++ + + VPS K K
Sbjct: 481 RAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 448 (162.8 bits), Expect = 3.6e-42, P = 3.6e-42
Identities = 132/403 (32%), Positives = 203/403 (50%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
+ES F + + ++ + + G ++ +QE TLP+ L G+DV+ +A+TG GKT AF +P
Sbjct: 8 TESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVP 67
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKY---HPS--------- 384
++ I S R P LV+ PTREL Q + +T KY P
Sbjct: 68 LLQR-ITSGDGTRPLTGAP-RALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRR 125
Query: 385 -IGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEA 443
+ V + GG + + ++A ++V TPGRL D + G +L G+ VLVLDEA
Sbjct: 126 RLSVVSIYGGRPYEPQIEALRAG-ADVVVGTPGRLLDLCQQ--GHL-QLGGLSVLVLDEA 181
Query: 444 DHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEE 503
D +LD+GF DIE+I+ +P RQ++LFSAT+P+ + + + R I S
Sbjct: 182 DEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTH-IRAEAPHSSA 240
Query: 504 THEQVRQ-MHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKL 562
H+ Q ++ LD L+ +L+ D ++F T + VAD L E
Sbjct: 241 VHDATEQFVYRAHALD-KVELVSRVLQAR--DRGA--TMIFTRTKRTAQKVADELTERGF 295
Query: 563 NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYI 622
V +H Q R + FR +LV +DV+ARG+D DVT VI P D + Y+
Sbjct: 296 AVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYV 355
Query: 623 HRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPI-LKAPVPS 664
HR+GRTGR G+ G + L+ W+E ++ D + L +P P+
Sbjct: 356 HRIGRTGRAGRTGVAVTLV-DWDELPRWSMIDQALGLGSPDPA 397
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 459 (166.6 bits), Expect = 4.7e-42, P = 4.7e-42
Identities = 131/395 (33%), Positives = 201/395 (50%)
Query: 294 IKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQR- 352
IK AG++K T +Q P++L+G D++ A+TGTGKT+++L+P V P V QR
Sbjct: 256 IKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRA 315
Query: 353 RPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILV 412
R +LV+ PTRELA Q E S Y V V GG R + ++ I++
Sbjct: 316 RNGPGMLVLTPTRELALQVEAECSKY-SYKGLKSVCVYGGGDRDGQIKDLLKG--VDIII 372
Query: 413 ATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472
ATPGRL D N + L + LVLDEAD +LDMGF I KI+ + RQT++ S
Sbjct: 373 ATPGRLNDLQMNNFVY---LKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTS 429
Query: 473 ATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREH 531
AT P VR++ LK ++ T++ + T V+Q +V D + +
Sbjct: 430 ATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVST---VKQNIIVTTEDEKRSHIQTFIESM 486
Query: 532 VADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLIL 591
+P+ KV++F + V ++ LG ++V +H + Q R R F+ K IL
Sbjct: 487 ---SPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRIL 543
Query: 592 VTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLST 651
+ +D+++RG+D DVT V P + E+Y+HR+GRTGR G+ G I L+ +
Sbjct: 544 IATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGE 603
Query: 652 IKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKE 686
+ + IL+ S+ D + ER ++ K E
Sbjct: 604 L--IHILERANQSIPEDLVEMAERYKANKLKKEME 636
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 468 (169.8 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 132/438 (30%), Positives = 224/438 (51%)
Query: 283 QCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVI 342
Q +++ L +K YEK +Q LP+++ G+D + AKTG+GKT+ F+LP + +
Sbjct: 533 QTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK 592
Query: 343 KSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVV--IGGTRLALEQ 400
PPV+ PI LV+ PTREL Q ++ + K+ +G++ V GG+ +A +
Sbjct: 593 DQPPVEAGDG--PI-GLVMAPTRELVQQIHSD---IRKFSKPLGIRCVPVYGGSGVAQQI 646
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
++ +I+V TPGR+ D + ++G T L V LV+DEAD + DMGF I +II
Sbjct: 647 SELKRGT-EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQ 705
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+ +RQT+LFSAT P +V + L + E I G ++ + Q+ V P
Sbjct: 706 NIRPERQTVLFSATFPRQVETLARKVLNKPVE-IQV--GGRSVVNKDITQLVEVRPESDR 762
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTA-MVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579
F L LL E + + K+LVF + + D++ + +H K Q+ R
Sbjct: 763 FLRLLELLGEW---SEKGKILVFVQSQEKCDALYRDMI-KSSYPCLSLHGGKDQTDREST 818
Query: 580 SDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639
+F+ +L+ + V+ARG+D ++ LV+ P+ E Y+HR+GRTGR G++G +
Sbjct: 819 ISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVT 878
Query: 640 LLAPWE-EFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQAW-LGYYN 697
++ + ++ +K L + + PVP D K + + +K K+ QA GY
Sbjct: 879 FISEDDAKYAPDLVKALELSEQPVPD---DLKALADGFM----VKVKQGIEQAHGTGYGG 931
Query: 698 SNKKVGRDKYKLVELANE 715
S K ++ ++ + A +
Sbjct: 932 SGFKFNEEEEEVRKAAKK 949
Score = 41 (19.5 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 194 ELEAGNVGRKTRFSNDDENDVGEERRR 220
E + V K R + E D G++R+R
Sbjct: 110 ERDKRRVNEKERGHREHERDRGKDRKR 136
Score = 40 (19.1 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 205 RFSNDDENDVGEERRR 220
R S+D E+DV EE R
Sbjct: 96 RKSSDSEDDVEEEDER 111
Score = 38 (18.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 207 SNDDENDVGEERRR 220
SN+ + D G E+RR
Sbjct: 32 SNERKKDKGSEKRR 45
>UNIPROTKB|A4RBS3 [details] [associations]
symbol:SUB2 "ATP-dependent RNA helicase SUB2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000230 EMBL:CM001237 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12812
RefSeq:XP_003720935.1 ProteinModelPortal:A4RBS3 SMR:A4RBS3
STRING:A4RBS3 PRIDE:A4RBS3 EnsemblFungi:MGG_02806T0 GeneID:2682359
KEGG:mgr:MGG_02806 OrthoDB:EOG4H49C6 Uniprot:A4RBS3
Length = 436
Score = 446 (162.1 bits), Expect = 6.3e-42, P = 6.3e-42
Identities = 124/387 (32%), Positives = 202/387 (52%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ I D G+E + VQ+ +P + G D++ +AK+G GKT F+L +++ V PV +
Sbjct: 64 LRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQV---EPVAGE 120
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ---KRMQANP 407
VLV+C TRELA Q E + KY P I V GGT + + K + +P
Sbjct: 121 -----CSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHP 175
Query: 408 CQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQR 466
I+V TPGRL + + F RL V++ VLDE D +LD + R+D+++I A P+Q+
Sbjct: 176 -HIIVGTPGRLNALVRDK--FL-RLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQK 231
Query: 467 QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYV 526
Q ++FSAT+ +E++ IC ++ E + V+E ++ T ++Q + VA L
Sbjct: 232 QVMMFSATLSDEIKPICKKFMQNPTE--HYVDEDTKLTLHGLQQ-YFVA---LEEKEKNR 285
Query: 527 LLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS 586
L E + D +V++F + + + LL E +HS Q R R EF++
Sbjct: 286 KLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEF 345
Query: 587 KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA-PWE 645
I V +DV RG+D + L I +P+D + Y+HR+GR GR G +G + + +
Sbjct: 346 NKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQD 405
Query: 646 EFFLSTIK---DLPILKAPVPSVDPDT 669
+ L+ I+ ++PI + P +D T
Sbjct: 406 KEVLTAIEKRFEVPIPEFPKDGIDAST 432
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 458 (166.3 bits), Expect = 6.3e-42, P = 6.3e-42
Identities = 130/399 (32%), Positives = 205/399 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
++ IK AG++K T +Q P++L+G D++ A+TGTGKT+ +L+P ++ P +
Sbjct: 254 MENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQ 313
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
+ RP +LVL PTRELA Q E Y V V GG R EQ I
Sbjct: 314 RNRPGMLVLT--PTRELALQVEGECCKY-SYKGLRSVCVYGGGNRD--EQIEELKKGVDI 368
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
++ATPGRL D + F L + LVLDEAD +LDMGF I KI+ V RQT++
Sbjct: 369 IIATPGRLNDL--QMSNFVN-LKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVM 425
Query: 471 FSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
SAT P V ++ LK ++ T++ + + V+Q +V + + + L+
Sbjct: 426 TSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSS---VKQNIIVTTEEEKWSHMQTFLQ 482
Query: 530 EHVADNPEYKVLVFCTT-AMVTRMVADL-LGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587
+ + KV+VF + A+ + +DL LG + +V +H + Q R + + F+ K
Sbjct: 483 SMSSTD---KVIVFVSRKAVADHLSSDLILGNI--SVESLHGDREQRDREKALENFKTGK 537
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEF 647
IL+ +D+++RG+D DVT V P + E+Y+HR+GRTGR G+ G I L +
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597
Query: 648 FLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKE 686
S + + IL+ S+ + ER +H + + E
Sbjct: 598 VASEL--INILERANQSIPEELVSMAERFKAHQQKREME 634
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 458 (166.3 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 125/393 (31%), Positives = 195/393 (49%)
Query: 283 QCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVI 342
QC IS L +K GYEK T +Q +P ++ G+D++ AKTG+GKT+AFLLP ++
Sbjct: 376 QCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIM 435
Query: 343 KSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTRLALEQ 400
++ + PI V ++ PTRELA Q E K+ ++G++VV GGT ++ EQ
Sbjct: 436 DQRSLEEGEG--PIAV-IMTPTRELALQITKECK---KFSKTLGLRVVCVYGGTGIS-EQ 488
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+I+V TPGR+ D + +G T L V +VLDEAD + DMGF + +I+
Sbjct: 489 IAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD 548
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETH-EQVRQMHLVAPLDL 519
V RQT++FSAT P + + L + E V+ G V Q +V +
Sbjct: 549 NVRPDRQTVMFSATFPRAMEALARRILSKPIE----VQVGGRSVVCSDVEQQVIVIEEEK 604
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHSRKPQSYRTR 578
F L LL H ++ V++F ++ DL+ +H Q R
Sbjct: 605 KFLKLLELLG-HYQESGS--VIIFVDKQEHADGLLKDLM-RASYPCMSLHGGIDQYDRDS 660
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ ++F+ +LV + V+ARG+D + LV+ P+ E Y+HR GRTGR G +G
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720
Query: 639 LLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKK 671
+ + + I + L+ +V PD +K
Sbjct: 721 TFITEDQARYAGDI--IKALELSGTAVPPDLEK 751
Score = 48 (22.0 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 70 RKLSTRPFRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKRFSKD 129
R+ +R R + S GRR SR+ G+K+ +AE + +TDS S+K KD
Sbjct: 83 RRSRSRDRRRSRSRSRGRR-SRSSS-PGNKS---KKAENRSRSKE-KTDSGESSKEKKKD 136
Query: 130 -DDVSDFR-KGSG 140
DD D + K +G
Sbjct: 137 KDDKEDEKEKDAG 149
Score = 40 (19.1 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 194 ELEAGNVGRKTRFSNDD--ENDVGEERRRG 221
E+E G+K +DD E+D E + G
Sbjct: 188 EIEEMKQGKKWSLEDDDDDEDDPAEAEKEG 217
Score = 38 (18.4 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 202 RKTRFSNDDENDVGEERRRGMS 223
++ R S E D ERRR S
Sbjct: 66 KRLRRSRSRERDRSRERRRSRS 87
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 458 (166.3 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 125/393 (31%), Positives = 195/393 (49%)
Query: 283 QCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVI 342
QC IS L +K GYEK T +Q +P ++ G+D++ AKTG+GKT+AFLLP ++
Sbjct: 376 QCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIM 435
Query: 343 KSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTRLALEQ 400
++ + PI V ++ PTRELA Q E K+ ++G++VV GGT ++ EQ
Sbjct: 436 DQRSLEEGEG--PIAV-IMTPTRELALQITKECK---KFSKTLGLRVVCVYGGTGIS-EQ 488
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+I+V TPGR+ D + +G T L V +VLDEAD + DMGF + +I+
Sbjct: 489 IAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD 548
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETH-EQVRQMHLVAPLDL 519
V RQT++FSAT P + + L + E V+ G V Q +V +
Sbjct: 549 NVRPDRQTVMFSATFPRAMEALARRILSKPIE----VQVGGRSVVCSDVEQQVIVIEEEK 604
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHSRKPQSYRTR 578
F L LL H ++ V++F ++ DL+ +H Q R
Sbjct: 605 KFLKLLELLG-HYQESGS--VIIFVDKQEHADGLLKDLM-RASYPCMSLHGGIDQYDRDS 660
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ ++F+ +LV + V+ARG+D + LV+ P+ E Y+HR GRTGR G +G
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720
Query: 639 LLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKK 671
+ + + I + L+ +V PD +K
Sbjct: 721 TFITEDQARYAGDI--IKALELSGTAVPPDLEK 751
Score = 48 (22.0 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 70 RKLSTRPFRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKRFSKD 129
R+ +R R + S GRR SR+ G+K+ +AE + +TDS S+K KD
Sbjct: 83 RRSRSRDRRRSRSRSRGRR-SRSSS-PGNKS---KKAENRSRSKE-KTDSGESSKEKKKD 136
Query: 130 -DDVSDFR-KGSG 140
DD D + K +G
Sbjct: 137 KDDKEDEKEKDAG 149
Score = 40 (19.1 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 194 ELEAGNVGRKTRFSNDD--ENDVGEERRRG 221
E+E G+K +DD E+D E + G
Sbjct: 188 EIEEMKQGKKWSLEDDDDDEDDPAEAEKEG 217
Score = 38 (18.4 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 202 RKTRFSNDDENDVGEERRRGMS 223
++ R S E D ERRR S
Sbjct: 66 KRLRRSRSRERDRSRERRRSRS 87
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 458 (166.3 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 125/393 (31%), Positives = 195/393 (49%)
Query: 283 QCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVI 342
QC IS L +K GYEK T +Q +P ++ G+D++ AKTG+GKT+AFLLP ++
Sbjct: 376 QCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIM 435
Query: 343 KSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTRLALEQ 400
++ + PI V ++ PTRELA Q E K+ ++G++VV GGT ++ EQ
Sbjct: 436 DQRSLEEGEG--PIAV-IMTPTRELALQITKECK---KFSKTLGLRVVCVYGGTGIS-EQ 488
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+I+V TPGR+ D + +G T L V +VLDEAD + DMGF + +I+
Sbjct: 489 IAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD 548
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETH-EQVRQMHLVAPLDL 519
V RQT++FSAT P + + L + E V+ G V Q +V +
Sbjct: 549 NVRPDRQTVMFSATFPRAMEALARRILSKPIE----VQVGGRSVVCSDVEQQVIVIEEEK 604
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAM-VTRMVADLLGELKLNVREIHSRKPQSYRTR 578
F L LL H ++ V++F ++ DL+ +H Q R
Sbjct: 605 KFLKLLELLG-HYQESGS--VIIFVDKQEHADGLLKDLM-RASYPCMSLHGGIDQYDRDS 660
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ ++F+ +LV + V+ARG+D + LV+ P+ E Y+HR GRTGR G +G
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720
Query: 639 LLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKK 671
+ + + I + L+ +V PD +K
Sbjct: 721 TFITEDQARYAGDI--IKALELSGTAVPPDLEK 751
Score = 48 (22.0 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 70 RKLSTRPFRPAASSEFGRRGSRAGEIRGSKNLIDDEAELSDWVSDLRTDSFHSNKRFSKD 129
R+ +R R + S GRR SR+ G+K+ +AE + +TDS S+K KD
Sbjct: 83 RRSRSRDRRRSRSRSRGRR-SRSSS-PGNKS---KKAENRSRSKE-KTDSGESSKEKKKD 136
Query: 130 -DDVSDFR-KGSG 140
DD D + K +G
Sbjct: 137 KDDKEDEKEKDAG 149
Score = 40 (19.1 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 194 ELEAGNVGRKTRFSNDD--ENDVGEERRRG 221
E+E G+K +DD E+D E + G
Sbjct: 188 EIEEMKQGKKWSLEDDDDDEDDPAEAEKEG 217
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 444 (161.4 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 112/332 (33%), Positives = 178/332 (53%)
Query: 347 VDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALEQKRMQ 404
+D QR + LV+ PTRELA Q + + L SIGV V++GG ++ Q
Sbjct: 88 LDAPQR---LFALVLTPTRELAFQISEQFEAL---GSSIGVHSAVIVGGID-SMSQSLAL 140
Query: 405 ANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK 464
A I++ATPGRL DH+ENT GF L +K LV+DEAD +L+M F +++KI+ +P+
Sbjct: 141 AKKPHIIIATPGRLVDHLENTKGF--NLRALKFLVMDEADRILNMDFETEVDKILKVIPR 198
Query: 465 QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLL 524
R+T LFSAT+ ++V+++ ALK + +T E+++Q ++ P L
Sbjct: 199 DRKTFLFSATMTKQVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYYIFIPSKFKDSYL 255
Query: 525 YVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR 584
+L E +A N ++FC+T T+ A LL L +H + Q+ R ++F+
Sbjct: 256 VYILNE-LAGN---SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFK 311
Query: 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW 644
IL+ +DV++RG+D P V +VI +P+ + YIHR+GRT R G+ G+ I + +
Sbjct: 312 AKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQY 371
Query: 645 EEFFLSTIKDLPILKAPV-PSVDPDTKKKVER 675
+ I+ L K P P + + ER
Sbjct: 372 DVELFQRIEHLIGKKLPAFPMQEEEVMMLTER 403
Score = 368 (134.6 bits), Expect = 3.5e-33, P = 3.5e-33
Identities = 95/286 (33%), Positives = 155/286 (54%)
Query: 276 MSESR-FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFL 334
+ E+R F ++ + + G++ T +Q +PV L+G+D++ A+TG+GKT AF
Sbjct: 21 VEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFA 80
Query: 335 LPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIG 392
LP ++ ++ +P QR + LV+ PTRELA Q + + L SIGV V++G
Sbjct: 81 LPILQALLDAP-----QR---LFALVLTPTRELAFQISEQFEAL---GSSIGVHSAVIVG 129
Query: 393 GTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFR 452
G ++ Q A I++ATPGRL DH+ENT GF L +K LV+DEAD +L+M F
Sbjct: 130 GID-SMSQSLALAKKPHIIIATPGRLVDHLENTKGF--NLRALKFLVMDEADRILNMDFE 186
Query: 453 KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512
+++KI+ +P+ R+T LFSAT+ ++V+++ ALK + +T E+++Q +
Sbjct: 187 TEVDKILKVIPRDRKTFLFSATMTKQVQKLQRAALKNP---VKCAVSSKYQTVEKLQQYY 243
Query: 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG 558
+ P L +L E +A N C T ++ LG
Sbjct: 244 IFIPSKFKDSYLVYILNE-LAGNSFMIFCSTCNNTQRTALLLRNLG 288
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 451 (163.8 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 118/363 (32%), Positives = 192/363 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F+ CS+ + +K +GYE T +Q +PV L G+D+LA A TG+GKT AFLLP V
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP---V 261
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
++++ + + P L+L PTRELA Q +A L+ P + +++GG L +
Sbjct: 262 IMRAL---FESKTPSALILT--PTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
R+Q + ++++ATPGRL D I+ ++ L GVK++V+DEAD +L MGF++ + I+
Sbjct: 317 YRLQQH-VKVIIATPGRLLDIIKQSS---VELCGVKIVVVDEADTMLKMGFQQQVLDILE 372
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
+P QT+L SAT+P + Q+ L H + + VRQ+ L
Sbjct: 373 NIPNDCQTILVSATIPTSIEQLASQLL---HNPVRIITGEKNLPCANVRQIILWVEDPAK 429
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTA--MVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
L+ +L + P V V C +++ V + G LK ++ IHS K Q R
Sbjct: 430 KKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITG-LK-SI-SIHSEKSQIERKN 486
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ + ++V++ V RG+D V LV+ +PS ++Y+H++GR GR G+ G I
Sbjct: 487 ILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAI 546
Query: 639 LLL 641
+
Sbjct: 547 TFI 549
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 325 (119.5 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 91/231 (39%), Positives = 130/231 (56%)
Query: 281 FDQCSISALSLKG-----IKDA-GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFL 334
F CS S+L L +K+ G+E T+VQ +PV+L G+DVL A TGTGKT+A+L
Sbjct: 26 FASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYL 85
Query: 335 LPSIEVVI-KSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL-KYHPSIGVQVVIG 392
P I + SP VDR LVI PTREL Q LL ++H I V+G
Sbjct: 86 APLIHHLQGHSPKVDRSHGT---FALVIVPTRELCLQVYETLEKLLHRFH-WIVPGYVMG 141
Query: 393 GTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFR 452
G + A E+ R++ IL+ATPGRL DH++NTA F + ++ ++ DEAD +L++G+
Sbjct: 142 GEKKAKEKARLRKG-ISILIATPGRLLDHLKNTASFVHK--NLRWVIFDEADSILELGYG 198
Query: 453 KDIEKIIAA--------------VPK--QRQTLLFSATVPEEVRQICHIAL 487
K+IE+II VPK Q+Q LL SAT+ ++V + ++L
Sbjct: 199 KEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSL 249
Score = 192 (72.6 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 61/204 (29%), Positives = 95/204 (46%)
Query: 560 LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDRE 619
LK +H Q R F+ K +L+++DV+ARG+D+P V +IQ P +
Sbjct: 372 LKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEAT 431
Query: 620 QYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK-------DLPILKA----PVPSVDPD 668
+Y+HR+GRT R G++G+ +L L P E +L +K + P++K P+P P
Sbjct: 432 EYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMPR 491
Query: 669 TKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYKLVELANEYSRSMG-LDNPPA 727
KK + SH + + + A ++ L Y K K V Y+ G L +
Sbjct: 492 IKKVLSLE-SHPWVISLQRALES-LTYAEPKMK-SLAKNAFVSWVRGYAAHKGELKSIFV 548
Query: 728 IPKLVLGKMG----LRNIPGLRSK 747
+ KL LG + LR P L K
Sbjct: 549 VKKLHLGHVAKSFALREQPSLVGK 572
Score = 40 (19.1 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 252 LIGLDKENGGMSVAISSPGKHDS 274
+IGLD +++I SP DS
Sbjct: 254 MIGLDNTKLQQNLSIESPAAPDS 276
Score = 37 (18.1 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 507 QVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK 561
Q+ Q +L P L +L+ KV+VF +T LL E +
Sbjct: 301 QLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQ 355
>TAIR|locus:2167903 [details] [associations]
symbol:PRH75 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
Length = 671
Score = 457 (165.9 bits), Expect = 1.6e-41, P = 1.6e-41
Identities = 129/365 (35%), Positives = 197/365 (53%)
Query: 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP 345
ISA + +K G E + +Q +T ++L G D++ +A+TG GKT+AF+LP +E ++ P
Sbjct: 103 ISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
Query: 346 PVDRDQ----RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLALE 399
+ + R P +LVL+ PTRELA Q A + Y S+G+ + GG ++
Sbjct: 163 AKSKRKMGYGRSPSVLVLL--PTRELAKQVAADFDA---YGGSLGLSSCCLYGGDSYPVQ 217
Query: 400 QKRMQANPCQILVATPGRLRDHIEN-TAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ +++ I+V TPGR++DHIE F+ ++ VLDEAD +L MGF +D+E I
Sbjct: 218 EGKLKRG-VDIVVGTPGRIKDHIERQNLDFSY----LQFRVLDEADEMLRMGFVEDVELI 272
Query: 459 IAAVPKQR--QTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516
+ V QTLLFSAT+P V+ I + LKRD + I+ V + VR H+ P
Sbjct: 273 LGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVR--HIAIP 330
Query: 517 LDLHFPLLYVLLREHVAD-NPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
+ + L+ + ++ + + ++F T + V++L G L R +H PQS
Sbjct: 331 CNK--AAMARLIPDIISCYSSGGQTIIFAETKV---QVSELSGLLD-GSRALHGEIPQSQ 384
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R FR K LV ++V+ARG+D DV L+IQ P + E YIHR GRTGR G G
Sbjct: 385 REVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
Query: 636 QGILL 640
+ L
Sbjct: 445 VAVTL 449
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 459 (166.6 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 126/359 (35%), Positives = 185/359 (51%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + +K I+ GY+ T +Q P+ + G + + AKTG+GKT+ ++LP+I
Sbjct: 283 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 342
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ P+ R PI LV+ PTRELA Q + +T + V GG +
Sbjct: 343 INNQQPLQRGDG--PI-ALVLAPTRELAQQIQ-QVATEFGSSSYVRNTCVFGGAPKGGQM 398
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ +Q C+I++ATPGRL D + +AG +T L LVLDEAD +LDMGF I KI++
Sbjct: 399 RDLQRG-CEIVIATPGRLIDFL--SAG-STNLKRCTYLVLDEADRMLDMGFEPQIRKIVS 454
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEE--THEQVRQMHLVAPLD 518
+ RQTL++SAT P+EV+Q+ L +I + GS E + +RQ+ V
Sbjct: 455 QIRPDRQTLMWSATWPKEVKQLAEDFLGN---YIQ-INIGSLELSANHNIRQVVDVCDEF 510
Query: 519 LHFPLLYVLLREHVADNPEY--KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYR 576
L LL + + D E K+++F T + + + IH K QS R
Sbjct: 511 SKEEKLKTLLSD-IYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSER 569
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
V EFR K ILV +DV+ARG+D + VI P + E YIHR+GRTGR +G
Sbjct: 570 DFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKG 628
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 353 (129.3 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 94/303 (31%), Positives = 161/303 (53%)
Query: 389 VVIGGTRLALEQKRMQANPCQILVATPGRLRDH----IENTAGFATRLMGVKVLVLDEAD 444
++IGGT + + + IL+ TPGR + + N F + ++L+LDEAD
Sbjct: 160 LLIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQF--KFKEFEMLILDEAD 217
Query: 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEET 504
LLDMGF I I+ +PKQR+T LFSAT EV+++ ++ + F +V ET
Sbjct: 218 RLLDMGFHLPINSILLKLPKQRRTGLFSATQTSEVKELARTGMR--NPFKVSVSVKHIET 275
Query: 505 HEQ------VRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG 558
HE + +++ P++ L L H+ N K++++ T +L
Sbjct: 276 HEDQSIPTTLDNRYMIVPVEERLNQLVHFLLNHIDKN---KIIIYFLTCSTVDYFFKILQ 332
Query: 559 ELK-LNVR---EIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL 614
+K L+ + +H + P S R +V D F ++ L+++D++ARG+D P+V V+Q
Sbjct: 333 SVKVLSGKPFFSLHGKAPHSQRIKVFDSFSQATNGCLLSTDLAARGLDIPNVDWVLQYDS 392
Query: 615 PSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLS--TIKDLPIL---KAP-VPSVDPD 668
P D + ++HR+GRT R G++G ++ L+P E+ ++ IK +P++ KA V +V P+
Sbjct: 393 PQDPKAFVHRIGRTARMGRDGNALIFLSPEEDSYIEFLKIKKVPLVEMVKAENVTNVLPE 452
Query: 669 TKK 671
KK
Sbjct: 453 IKK 455
Score = 160 (61.4 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 34/85 (40%), Positives = 55/85 (64%)
Query: 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP 345
+S +L I G++ M+ VQ A +P+ + KDVL +A TG+GKT+AF++P IE ++K
Sbjct: 17 LSDSTLNTINRLGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKR- 75
Query: 346 PVDRDQRRPPILVLVICPTRELATQ 370
+ + ++ I ++I PTRELA Q
Sbjct: 76 --ETNLKKTDIASIIISPTRELAIQ 98
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 454 (164.9 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 131/401 (32%), Positives = 206/401 (51%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
+ I+ G++K T +Q P++L+G D++ A+TGTGKT+A+L+P + + S P+ +D
Sbjct: 252 MANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGF-IHLASQPIPKD 310
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI--GGTRLALEQKRMQANPC 408
+R P + LV+ PTRELA Q E LKY + I GG R A Q +
Sbjct: 311 KRGGPGM-LVLAPTRELALQVEAEC---LKYTYKGFKSICIYGGGDRKA--QINVVTKGV 364
Query: 409 QILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 468
I++ATPGRL D N F L + L +EAD +LDMGF I KI+ V RQT
Sbjct: 365 DIVIATPGRLNDLQMNN--FIN-LKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQT 420
Query: 469 LLFSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVL 527
++ SAT P+ VR++ L+ ++ T++ + T EQ V ++ ++
Sbjct: 421 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQK-----VIVINEEEKKAFM- 474
Query: 528 LREHVADN--PEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK 585
E+ D+ P+ K ++F +A LG + V+ +H + Q R + D+F+K
Sbjct: 475 --ENFIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKK 532
Query: 586 SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWE 645
K ILV +D+++RG+D D+T V P + E+Y+HR+GRTGR G+ G+ + L+ +
Sbjct: 533 GKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKD 592
Query: 646 EFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKNKE 686
S + D IL+ V + ER H K E
Sbjct: 593 WKAASELID--ILQRAKQVVPDELISMAERYKQHQIRKEME 631
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 450 (163.5 bits), Expect = 1.9e-41, P = 1.9e-41
Identities = 116/363 (31%), Positives = 189/363 (52%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F+ C + +K +GYE T +Q +PV L G+D+LA A TG+GKT AFLLP V
Sbjct: 205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP---V 261
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+I++ D+ P L+L PTRELA Q +A L+ P + +++GG L +
Sbjct: 262 IIRAFSEDKT---PSALILT--PTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
R++ + ++++ATPGRL D I+ ++ L G+K++V+DEAD +L MGF++ + ++
Sbjct: 317 YRLRQH-VKVIIATPGRLLDIIKQSS---VSLSGIKIVVVDEADTMLKMGFQQQVLDVLE 372
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLH 520
P QT+L SAT+P+ + Q+ L H + + VRQ+ L
Sbjct: 373 HTPGDCQTILVSATIPDSIEQLTDQLL---HNPVRIITGDKNLPCASVRQIILWVEDPAK 429
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTA--MVTRMVADLLGELKLNVREIHSRKPQSYRTR 578
L+ +L + P V V C +++ V + G LN IHS K Q R
Sbjct: 430 KKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITG---LNSTSIHSEKSQVERRD 486
Query: 579 VSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI 638
+ + ++V++ V RG+D +V LV+ +PS ++Y+H++GR GR G+ G I
Sbjct: 487 ILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAI 546
Query: 639 LLL 641
+
Sbjct: 547 TFI 549
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 441 (160.3 bits), Expect = 2.4e-41, P = 2.4e-41
Identities = 120/358 (33%), Positives = 189/358 (52%)
Query: 290 SLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR 349
++K +EK T VQ P+ L G D+L +KTG+GKT++F+LP+IE ++ P R
Sbjct: 150 TIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQP---R 206
Query: 350 DQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQ 409
P VLV+ PTRELA Q EA L+ +I + + GG +Q ++ P +
Sbjct: 207 QSYYPGPSVLVVAPTRELANQINQEAEQYLRL-VNIEIATIYGGAPRRSQQLQLSRRP-K 264
Query: 410 ILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTL 469
I+V TPGR+ D +E+ G + L + LV+DEAD L++MGF + I+ I ++ RQ L
Sbjct: 265 IVVGTPGRIIDFMES--GDLS-LKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVL 321
Query: 470 LFSATVPEEVRQICHIALKRDHEFINTVEEGSEE--THEQVRQMHLVAPLDLH-FPLLYV 526
+SAT P++V A K I ++ GS + ++ + Q + P D L
Sbjct: 322 YWSATWPKKVSSF---AEKHIRTPIR-LQIGSSQLTANKNISQKFKIVPTDADKVDALMD 377
Query: 527 LLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVR--EIHSRKPQSYRTRVSDEFR 584
L E + + + + L+F T + + NVR +H Q+ R R+ +F+
Sbjct: 378 TLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFK 437
Query: 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA 642
+ I+V +DV++RG+D ++ VI LPSD E Y+HR+GRTGR G G +L+
Sbjct: 438 NKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILS 495
WARNING: HSPs involving 671 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 747 657 0.00096 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 921
No. of states in DFA: 616 (65 KB)
Total size of DFA: 307 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.89u 0.18s 55.07t Elapsed: 00:00:03
Total cpu time: 54.96u 0.18s 55.14t Elapsed: 00:00:03
Start: Mon May 20 17:53:37 2013 End: Mon May 20 17:53:40 2013
WARNINGS ISSUED: 2