BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004518
(747 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 202/368 (54%), Gaps = 32/368 (8%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGK-DVLAKAKTGTGKTVAFLLPSIE 339
F++ ++S L I++ G+EK T +Q +P+ L + +++A+A+TG+GKT +F +P IE
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+V ++ ++ +++ PTRELA Q A E +L K + ++ + + GG + +
Sbjct: 68 LVNENNGIE---------AIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQ 117
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
K ++ I+V TPGR+ DHI L VK +LDEAD L+ GF KD+EKI+
Sbjct: 118 IKALK--NANIVVGTPGRILDHINRGT---LNLKNVKYFILDEADEXLNXGFIKDVEKIL 172
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKR--DHEFINTVEEGSEETHEQVRQMHLVAPL 517
A K ++ LLFSAT P R+I ++A K D+ FI + + + Q ++
Sbjct: 173 NACNKDKRILLFSATXP---REILNLAKKYXGDYSFIKA------KINANIEQSYVEVNE 223
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRT 577
+ F L LL+ N E+ LVFC T T+ +A L ++ IH QS R
Sbjct: 224 NERFEALCRLLK-----NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQRE 278
Query: 578 RVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637
+V F++ K IL+ +DV +RG+D D+ VI LP + E Y HR+GRTGR GK+G+
Sbjct: 279 KVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKA 338
Query: 638 ILLLAPWE 645
I ++ E
Sbjct: 339 ISIINRRE 346
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 210/387 (54%), Gaps = 36/387 (9%)
Query: 292 KGIKDAGYEKMTIVQEATLPVLLKGKD--VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR 349
K I + +T VQ+ T+ +L +D V+A+AKTGTGKT AFL+P + +I + +
Sbjct: 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT----K 89
Query: 350 DQRRPPILVLVICPTRELATQAATEASTL------LKYHPSIGVQVVIGGTRLALEQKRM 403
+ + +++ PTR+LA Q E + LK + + + +GGT +M
Sbjct: 90 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSL---VGGTDFRAAMNKM 146
Query: 404 QANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVP 463
I++ATPGRL D +E + R + KVL DEAD LL++GFR D+E I +
Sbjct: 147 NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL--DEADRLLEIGFRDDLETISGILN 204
Query: 464 KQR-------QTLLFSATVPEEVRQICH-IALKRDHEFINTVEEGSEETHEQVRQMHLVA 515
++ +TLLFSAT+ ++V+++ + I K++ F++TV++ E HE++ Q +++
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264
Query: 516 PLDLHFPLLYVLLREHVAD-----NPEYKVLVFCTTAMVTRMVADLL-GELK--LNVREI 567
F EH+ + YK ++F T T + +L E K L + E
Sbjct: 265 E---KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 321
Query: 568 HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGR 627
H + Q+ RT + F+K + ILV +DV ARG+D+P+V V+Q+G+PS+ YIHR+GR
Sbjct: 322 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGR 381
Query: 628 TGRKGKEGQGILLLAPWEEFFLSTIKD 654
T R GKEG +L + E F+ ++D
Sbjct: 382 TARSGKEGSSVLFICKDELPFVRELED 408
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 225/427 (52%), Gaps = 47/427 (11%)
Query: 252 LIGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLP 311
LI + KE+ V + DS + E D+ I K I + +T VQ+ T+
Sbjct: 56 LIHVPKEDNSKEVTL------DSLLEEGVLDK-EIH----KAITRMEFPGLTPVQQKTIK 104
Query: 312 VLLKGKD--VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT 369
+L +D V+A+AKTGTGKT AFL+P + +I + + + + +++ PTR+LA
Sbjct: 105 PILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT----KFDSQYMVKAVIVAPTRDLAL 160
Query: 370 QAATEASTL------LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIE 423
Q E + LK + + + +GGT +M I++ATPGRL D +E
Sbjct: 161 QIEAEVKKIHDMNYGLKKYACVSL---VGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE 217
Query: 424 NTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQR-------QTLLFSATVP 476
+ R + KVL DEAD LL++GFR D+E I + ++ +TLLFSAT+
Sbjct: 218 KYSNKFFRFVDYKVL--DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD 275
Query: 477 EEVRQICH-IALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVAD- 534
++V+++ + I K++ F++TV++ E HE++ Q +++ F EH+
Sbjct: 276 DKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE---KFANSIFAAVEHIKKQ 332
Query: 535 ----NPEYKVLVFCTTAMVTRMVADLL-GELK--LNVREIHSRKPQSYRTRVSDEFRKSK 587
+ YK ++F T T + +L E K L + E H + Q+ RT + F+K +
Sbjct: 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 392
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEF 647
ILV +DV ARG+D+P+V V+Q+G+PS+ YIHR+GRT R GKEG +L + E
Sbjct: 393 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 452
Query: 648 FLSTIKD 654
F+ ++D
Sbjct: 453 FVRELED 459
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 225/427 (52%), Gaps = 47/427 (11%)
Query: 252 LIGLDKENGGMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLP 311
LI + KE+ V + DS + E D+ I K I + +T VQ+ T+
Sbjct: 5 LIHVPKEDNSKEVTL------DSLLEEGVLDK-EIH----KAITRMEFPGLTPVQQKTIK 53
Query: 312 VLLKGKD--VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT 369
+L +D V+A+AKTGTGKT AFL+P + +I + + + + +++ PTR+LA
Sbjct: 54 PILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT----KFDSQYMVKAVIVAPTRDLAL 109
Query: 370 QAATEASTL------LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIE 423
Q E + LK + + + +GGT +M I++ATPGRL D +E
Sbjct: 110 QIEAEVKKIHDMNYGLKKYACVSL---VGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE 166
Query: 424 NTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQR-------QTLLFSATVP 476
+ R + KVL DEAD LL++GFR D+E I + ++ +TLLFSAT+
Sbjct: 167 KYSNKFFRFVDYKVL--DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD 224
Query: 477 EEVRQICH-IALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVAD- 534
++V+++ + I K++ F++TV++ E HE++ Q +++ F EH+
Sbjct: 225 DKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE---KFANSIFAAVEHIKKQ 281
Query: 535 ----NPEYKVLVFCTTAMVTRMVADLL-GELK--LNVREIHSRKPQSYRTRVSDEFRKSK 587
+ YK ++F T T + +L E K L + E H + Q+ RT + F+K +
Sbjct: 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 341
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEF 647
ILV +DV ARG+D+P+V V+Q+G+PS+ YIHR+GRT R GKEG +L + E
Sbjct: 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401
Query: 648 FLSTIKD 654
F+ ++D
Sbjct: 402 FVRELED 408
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/383 (34%), Positives = 199/383 (51%), Gaps = 38/383 (9%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L GI +AG+EK + +QE +PV + G+D+LA+AK GTGKT AF++P++E V P +++
Sbjct: 33 LMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV--KPKLNKI 90
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
Q L++ PTRELA Q + TL K H I V GGT L + R+ I
Sbjct: 91 Q------ALIMVPTRELALQTSQVVRTLGK-HCGISCMVTTGGTNLRDDILRLNET-VHI 142
Query: 411 LVATPGRLRDHIENTAGFATR----LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQR 466
LV TPGR+ D A+R L + ++DEAD +L F+ IE+I++ +P
Sbjct: 143 LVGTPGRVLD-------LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195
Query: 467 QTLLFSATVPEEVRQICHIALKRDHEFINTVEE----GSEETHEQVRQMHLVAPLDLHFP 522
Q+LLFSAT P V++ L + +E IN +EE G + + V + + L+ F
Sbjct: 196 QSLLFSATFPLTVKEFMVKHLHKPYE-INLMEELTLKGITQYYAFVEERQKLHCLNTLFS 254
Query: 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDE 582
L + + ++FC + ++A + +L + H+R Q R +V E
Sbjct: 255 KLQI-----------NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHE 303
Query: 583 FRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA 642
FR+ K LV SD+ RG+D V +VI P E Y+HR+GR+GR G G I L+
Sbjct: 304 FRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 363
Query: 643 PWEEFFLSTI-KDLPILKAPVPS 664
+ F L I ++L A +P+
Sbjct: 364 WNDRFNLYKIEQELGTEIAAIPA 386
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 196/371 (52%), Gaps = 22/371 (5%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
F + + + + +GY+ T +Q+ ++PV+ G+D++A A+TG+GKT AFLLP +
Sbjct: 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILS 116
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+++ P + + RP V+++ PTRELA Q EA + + + +V GGT
Sbjct: 117 KLLEDPH-ELELGRPQ--VVIVSPTRELAIQIFNEARKF-AFESYLKIGIVYGGTSFR-H 171
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
Q C +++ATPGRL D ++ T F T + +VLDEAD +LDMGF +D+ +I+
Sbjct: 172 QNECITRGCHVVIATPGRLLDFVDRT--FIT-FEDTRFVVLDEADRMLDMGFSEDMRRIM 228
Query: 460 AAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEF--INTVEEGSEETHEQVRQMHLVA 515
V + QTL+FSAT PEE++++ LK ++ F I V + + + +++ A
Sbjct: 229 THVTMRPEHQTLMFSATFPEEIQRMAGEFLK-NYVFVAIGIVGGACSDVKQTIYEVNKYA 287
Query: 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSY 575
L+ +L + AD +VF T +A L E + IH + QS
Sbjct: 288 KRS---KLIEILSEQ--ADG----TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQ 338
Query: 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635
R + +F+ +L+ + V++RG+D ++ VI +PS + Y+HR+GRTGR G G
Sbjct: 339 REQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 398
Query: 636 QGILLLAPWEE 646
+ P ++
Sbjct: 399 RATSFFDPEKD 409
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 192/361 (53%), Gaps = 44/361 (12%)
Query: 292 KGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQ 351
+ I++ G++ T VQ T+P++L+GK+V+ +AKTG+GKT A+ +P +E+ +KS
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKS------- 59
Query: 352 RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQIL 411
LV+ PTREL Q A+ + +Y + V V GG + R++ I+
Sbjct: 60 -------LVVTPTRELTRQVASHIRDIGRYMDT-KVAEVYGGMPYKAQINRVR--NADIV 109
Query: 412 VATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471
VATPGRL D L +++++DEAD + +MGF DI+ I+A ++ T LF
Sbjct: 110 VATPGRLLDLWSKGV---IDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLF 166
Query: 472 SATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREH 531
SAT+PEE+R++ +FI +E++ +A ++ F + R
Sbjct: 167 SATIPEEIRKVVK-------DFITN--------YEEIEACIGLANVEHKFVHVKDDWRSK 211
Query: 532 VA---DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588
V +N + V+VF T VA L+ L N E+ PQS R R D FR+ +
Sbjct: 212 VQALRENKDKGVIVFVRT---RNRVAKLV-RLFDNAIELRGDLPQSVRNRNIDAFREGEY 267
Query: 589 LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFF 648
+L+T+DV++RG+D P V VI P D YIHR+GRTGR G++G+ I + E++
Sbjct: 268 DMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL--NEYW 325
Query: 649 L 649
L
Sbjct: 326 L 326
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 197/394 (50%), Gaps = 45/394 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD + L+GI G+EK + +Q+ + ++KG+DV+A++++GTGKT F + ++
Sbjct: 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ D + L++ PTRELA Q L Y ++ IGGT + +
Sbjct: 99 L--------DIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDI 149
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ ++ TPGR+ D I + R +K+LVLDEAD +L+ GF++ I +
Sbjct: 150 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 205
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
+P Q +L SAT+P E+ ++ + I +KRD E T E ++Q
Sbjct: 206 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-----------ELTLEGIKQFF 254
Query: 513 L-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRK 571
+ V + F L L + ++FC T + + + E V +H
Sbjct: 255 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 310
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
PQ R + EFR +L+++DV ARG+D P V+L+I LP++RE YIHR+GR+GR
Sbjct: 311 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 370
Query: 632 GKEG--------QGILLLAPWEEFFLSTIKDLPI 657
G++G I +L E+++ + I ++P+
Sbjct: 371 GRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 197/394 (50%), Gaps = 45/394 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD + L+GI G+EK + +Q+ + ++KG+DV+A++++GTGKT F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ D + L++ PTRELA Q L Y ++ IGGT + +
Sbjct: 100 L--------DIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDI 150
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ ++ TPGR+ D I + R +K+LVLDEAD +L+ GF++ I +
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
+P Q +L SAT+P E+ ++ + I +KRD E T E ++Q
Sbjct: 207 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-----------ELTLEGIKQFF 255
Query: 513 L-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRK 571
+ V + F L L + ++FC T + + + E V +H
Sbjct: 256 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 311
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
PQ R + EFR +L+++DV ARG+D P V+L+I LP++RE YIHR+GR+GR
Sbjct: 312 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Query: 632 GKEG--------QGILLLAPWEEFFLSTIKDLPI 657
G++G I +L E+++ + I ++P+
Sbjct: 372 GRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 405
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 197/394 (50%), Gaps = 45/394 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD + L+GI G+EK + +Q+ + ++KG+DV+A++++GTGKT F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ D + L++ PTRELA Q L Y ++ IGGT + +
Sbjct: 100 L--------DIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDI 150
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ ++ TPGR+ D I + R +K+LVLDEAD +L+ GF++ I +
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
+P Q +L SAT+P E+ ++ + I +KRD E T E ++Q
Sbjct: 207 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-----------ELTLEGIKQFF 255
Query: 513 L-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRK 571
+ V + F L L + ++FC T + + + E V +H
Sbjct: 256 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 311
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
PQ R + EFR +L+++DV ARG+D P V+L+I LP++RE YIHR+GR+GR
Sbjct: 312 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Query: 632 GKEG--------QGILLLAPWEEFFLSTIKDLPI 657
G++G I +L E+++ + I ++P+
Sbjct: 372 GRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 405
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 197/394 (50%), Gaps = 45/394 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD + L+GI G+EK + +Q+ + ++KG+DV+A++++GTGKT F + ++
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ D + L++ PTRELA Q L Y ++ IGGT + +
Sbjct: 63 L--------DIQVRETQALILAPTRELAVQVQKGLLALGDYM-NVQCHACIGGTNVGEDI 113
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ ++ TPGR+ D I + R +K+LVLDEAD +L+ GF++ I +
Sbjct: 114 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 169
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
+P Q +L SAT+P E+ ++ + I +KRD E T E ++Q
Sbjct: 170 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-----------ELTLEGIKQFF 218
Query: 513 L-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRK 571
+ V + F L L + ++FC T + + + E V +H
Sbjct: 219 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 274
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
PQ R + EFR +L+++DV ARG+D P V+L+I LP++RE YIHR+GR+GR
Sbjct: 275 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 334
Query: 632 GKEG--------QGILLLAPWEEFFLSTIKDLPI 657
G++G I +L E+++ + I ++P+
Sbjct: 335 GRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPM 368
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 197/394 (50%), Gaps = 45/394 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD + L+GI G+EK + +Q+ + ++KG+DV+A++++GTGKT F + ++
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ D + L++ PTRELA Q L Y ++ IGGT + +
Sbjct: 63 L--------DIQVRETQALILAPTRELAVQVQKGLLALGDYM-NVQSHACIGGTNVGEDI 113
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ ++ TPGR+ D I + R +K+LVLDEAD +L+ GF++ I +
Sbjct: 114 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 169
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
+P Q +L SAT+P EV ++ + I +KRD E T E ++Q
Sbjct: 170 YLPPATQVVLISATLPHEVLEMTNKFMTDPIRILVKRD-----------ELTLEGIKQFF 218
Query: 513 L-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRK 571
+ V + F L L + ++FC T + + + E V +H
Sbjct: 219 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 274
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
PQ R + EFR +L+++DV ARG+D P V+L+I LP++RE YIHR+GR+GR
Sbjct: 275 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 334
Query: 632 GKEG--------QGILLLAPWEEFFLSTIKDLPI 657
G++G I +L E+++ + I ++P+
Sbjct: 335 GRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPM 368
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 197/394 (50%), Gaps = 45/394 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
FD + L+GI G+EK + +Q+ + ++KG+DV+A++++GTGKT F + ++
Sbjct: 18 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 77
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ D + L++ PTRELA Q L Y ++ IGGT + +
Sbjct: 78 L--------DIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDI 128
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+++ ++ TPGR+ D I + R +K+LVLDEAD +L+ GF++ I +
Sbjct: 129 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 184
Query: 461 AVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVRQMH 512
+P Q +L SAT+P E+ ++ + I +KRD E T E ++Q
Sbjct: 185 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-----------ELTLEGIKQFF 233
Query: 513 L-VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRK 571
+ V + F L L + ++FC T + + + E V +H
Sbjct: 234 VAVEREEWKFDTLCDLYDTLTIT----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 289
Query: 572 PQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631
PQ R + EFR +L+++DV ARG+D P V+L+I LP++RE YIHR+GR+GR
Sbjct: 290 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 349
Query: 632 GKEG--------QGILLLAPWEEFFLSTIKDLPI 657
G++G I +L E+++ + I ++P+
Sbjct: 350 GRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 383
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/402 (33%), Positives = 194/402 (48%), Gaps = 32/402 (7%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + + I+ Y + T VQ+ +P++ + +D++A A+TG+GKT AFLLP +
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76
Query: 341 VIKSPPVD----------RDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVV 390
+ P + +R+ + LV+ PTRELA Q EA Y + VV
Sbjct: 77 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVV 135
Query: 391 IGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG 450
GG + +Q R C +LVATPGRL D +E L K LVLDEAD +LDMG
Sbjct: 136 YGGADIG-QQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRMLDMG 191
Query: 451 FRKDIEKIIA--AVPKQ--RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHE 506
F I +I+ +P + R T++FSAT P+E++ + L ++ F+ GS T E
Sbjct: 192 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD-EYIFLAVGRVGS--TSE 248
Query: 507 QVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVRE 566
+ Q + L LL A + LVF T + D L
Sbjct: 249 NITQKVVWVEESDKRSFLLDLLN---ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTS 305
Query: 567 IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLG 626
IH + Q R +FR K ILV + V+ARG+D +V VI LPSD E+Y+HR+G
Sbjct: 306 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 365
Query: 627 RTGRKGKEGQGILLLAPWEEFFLSTIKDLPIL----KAPVPS 664
RTGR G G L + + E ++ KDL L K VPS
Sbjct: 366 RTGRVGNLG---LATSFFNERNINITKDLLDLLVEAKQEVPS 404
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 20/354 (5%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ I D G+E + VQ +P + G DVL +AK+G GKT F+L +++ + PV
Sbjct: 19 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ---QLEPV--- 72
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
+ VLV+C TRELA Q + E KY P++ V V GG + +++ ++ N I
Sbjct: 73 --TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 130
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTL 469
+V TPGR+ N + L +K +LDEAD +L+ + R+D+++I P ++Q +
Sbjct: 131 VVGTPGRILALARNKS---LNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVM 187
Query: 470 LFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
+FSAT+ +E+R +C ++ E V++ ++ T ++Q ++ + L+ LL
Sbjct: 188 MFSATLSKEIRPVCRKFMQDPMEIF--VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL- 244
Query: 530 EHVADNPEY-KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588
D E+ +V++F + +A LL E IH PQ R +F+ +
Sbjct: 245 ----DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 300
Query: 589 LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA 642
ILV +++ RG+D V + +P D + Y+HR+ R GR G +G I ++
Sbjct: 301 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 354
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 182/354 (51%), Gaps = 20/354 (5%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ I D G+E + VQ +P + G DVL +AK+G GKT F+L +++ + PV
Sbjct: 20 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ---QLEPV--- 73
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
+ VLV+C TRELA Q + E KY P++ V V GG + +++ ++ N I
Sbjct: 74 --TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTL 469
+V TPGR+ N + L +K +LDE D +L+ + R+D+++I P ++Q +
Sbjct: 132 VVGTPGRILALARNKS---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 188
Query: 470 LFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
+FSAT+ +E+R +C ++ E V++ ++ T ++Q ++ + L+ LL
Sbjct: 189 MFSATLSKEIRPVCRKFMQDPMEIF--VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL- 245
Query: 530 EHVADNPEY-KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588
D E+ +V++F + +A LL E IH PQ R +F+ +
Sbjct: 246 ----DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 301
Query: 589 LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA 642
ILV +++ RG+D V + +P D + Y+HR+ R GR G +G I ++
Sbjct: 302 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 182/354 (51%), Gaps = 20/354 (5%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ I D G+E + VQ +P + G DVL +AK+G GKT F+L +++ + PV
Sbjct: 20 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ---QLEPVT-- 74
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
+ VLV+C TRELA Q + E KY P++ V V GG + +++ ++ N I
Sbjct: 75 ---GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTL 469
+V TPGR+ N + L +K +LDE D +L+ + R+D+++I P ++Q +
Sbjct: 132 VVGTPGRILALARNKS---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 188
Query: 470 LFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR 529
+FSAT+ +E+R +C ++ E V++ ++ T ++Q ++ + L+ LL
Sbjct: 189 MFSATLSKEIRPVCRKFMQDPMEIF--VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL- 245
Query: 530 EHVADNPEY-KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588
D E+ +V++F + +A LL E IH PQ R +F+ +
Sbjct: 246 ----DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 301
Query: 589 LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA 642
ILV +++ RG+D V + +P D + Y+HR+ R GR G +G I ++
Sbjct: 302 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 142/221 (64%), Gaps = 15/221 (6%)
Query: 281 FDQCSISAL-------SLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF 333
F+ S ++L +LK IK+ G+ MT +Q ++ LL+G+D+LA AKTG+GKT+AF
Sbjct: 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 108
Query: 334 LLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393
L+P++E+++K R R VL++ PTRELA Q L+ +H +++GG
Sbjct: 109 LIPAVELIVKL----RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHT-YGLIMGG 163
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
+ + E +++ N I+VATPGRL DH++NT GF + ++ LV+DEAD +LD+GF +
Sbjct: 164 SNRSAEAQKL-GNGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEE 220
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFI 494
++++II +P +RQT+LFSAT +V + I+LK++ ++
Sbjct: 221 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 261
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 203/388 (52%), Gaps = 34/388 (8%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+FD + L+G+ G+E+ + +Q+ + +++G DVLA+A++GTGKT F + +++
Sbjct: 23 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 82
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+D + P L+L PTRELA Q + L +H I V IGGT +
Sbjct: 83 ------RIDTSVKAPQALML--APTRELALQIQ-KVVMALAFHMDIKVHACIGGTSFVED 133
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++ QI+V TPGR+ D+I+ R +K+ +LDEAD +L GF++ I +I
Sbjct: 134 AEGLR--DAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+P Q +L SAT+P +V ++ ++ + + + E T E ++Q ++ +
Sbjct: 189 TLLPPTTQVVLLSATMPNDVLEVTTKFMRNP---VRILVKKDELTLEGIKQFYVNVEEEE 245
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL---KLNVREIHSRKPQSYR 576
+ Y L + + ++FC T R V +L +L K V I+S PQ R
Sbjct: 246 Y---KYECLTDLYDSISVTQAVIFCNTR---RKVEELTTKLRNDKFTVSAIYSDLPQQER 299
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636
+ EFR IL+++D+ ARG+D V+LVI LP+++E YIHR+GR GR G++G
Sbjct: 300 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 359
Query: 637 GILLLA--------PWEEFFLSTIKDLP 656
I + E+F+ + I++LP
Sbjct: 360 AINFVTNEDVGAMRELEKFYSTQIEELP 387
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 197/388 (50%), Gaps = 34/388 (8%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+FD + L+G+ G+E+ + +Q+ + +++G DVLA+A++GTGKT F + +++
Sbjct: 22 KFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+D + P L L PTRELA Q + L +H I V IGGT +
Sbjct: 82 ------RIDTSVKAPQALXL--APTRELALQIQ-KVVXALAFHXDIKVHACIGGTSFVED 132
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++ QI+V TPGR+ D+I+ R +K +LDEAD L GF++ I +I
Sbjct: 133 AEGLR--DAQIVVGTPGRVFDNIQRRR---FRTDKIKXFILDEADEXLSSGFKEQIYQIF 187
Query: 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519
+P Q +L SAT P +V + K + + + E T E ++Q ++ +
Sbjct: 188 TLLPPTTQVVLLSATXPNDV---LEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEE 244
Query: 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL---KLNVREIHSRKPQSYR 576
+ Y L + + ++FC T R V +L +L K V I+S PQ R
Sbjct: 245 Y---KYECLTDLYDSISVTQAVIFCNTR---RKVEELTTKLRNDKFTVSAIYSDLPQQER 298
Query: 577 TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636
+ EFR IL+++D+ ARG+D V+LVI LP+++E YIHR+GR GR G++G
Sbjct: 299 DTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 358
Query: 637 GILLLA--------PWEEFFLSTIKDLP 656
I + E+F+ + I++LP
Sbjct: 359 AINFVTNEDVGAXRELEKFYSTQIEELP 386
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 129/211 (61%), Gaps = 11/211 (5%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+RF +S +LKG+++A Y +T +Q+ T+ + L+GKDVL AKTG+GKT+AFL+P +
Sbjct: 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 84
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + + D + VL+I PTRELA Q + K H ++IGG L
Sbjct: 85 EALYRLQWTSTD----GLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKH 139
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGF-ATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +R+ N ILV TPGRL H++ T F AT L ++LVLDEAD +LDMGF +
Sbjct: 140 EAERI--NNINILVCTPGRLLQHMDETVSFHATDL---QMLVLDEADRILDMGFADTMNA 194
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALK 488
+I +PK+RQTLLFSAT + V+ + ++LK
Sbjct: 195 VIENLPKKRQTLLFSATQTKSVKDLARLSLK 225
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 175/362 (48%), Gaps = 56/362 (15%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF---LLPS 337
FD ++S L+GI G+EK + +Q+ + +KG DV+A+A++GTGKT F +L
Sbjct: 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 101
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE+ +K+ LV+ PTRELA Q L Y + IGGT +
Sbjct: 102 IELDLKATQA-----------LVLAPTRELAQQIQKVVMALGDYMGA-SCHACIGGTNVR 149
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +++Q I+V TPGR+ D + N + + +K+ VLDEAD +L GF+ I
Sbjct: 150 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 206
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
I + Q +L SAT+P +V ++ RD I + + E T E +RQ ++
Sbjct: 207 IFQKLNSNTQVVLLSATMPSDVLEVTK-KFMRDP--IRILVKKEELTLEGIRQFYINV-- 261
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFC--------TTAMV---TRMVADLLGELKLNVRE 566
+ E+K+ C T A++ TR D L E K++ R+
Sbjct: 262 ----------------EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE-KMHARD 304
Query: 567 -----IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY 621
+H Q R + EFR +L+T+D+ ARG+D V+LVI LP++RE Y
Sbjct: 305 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 364
Query: 622 IH 623
IH
Sbjct: 365 IH 366
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 175/362 (48%), Gaps = 56/362 (15%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF---LLPS 337
FD ++S L+GI G+EK + +Q+ + +KG DV+A+A++GTGKT F +L
Sbjct: 16 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 75
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE+ +K+ LV+ PTRELA Q L Y + IGGT +
Sbjct: 76 IELDLKATQA-----------LVLAPTRELAQQIQKVVMALGDYMGA-SCHACIGGTNVR 123
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +++Q I+V TPGR+ D + N + + +K+ VLDEAD +L GF+ I
Sbjct: 124 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 180
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517
I + Q +L SAT+P +V ++ RD I + + E T E +RQ ++
Sbjct: 181 IFQKLNSNTQVVLLSATMPSDVLEVTK-KFMRDP--IRILVKKEELTLEGIRQFYINV-- 235
Query: 518 DLHFPLLYVLLREHVADNPEYKVLVFC--------TTAMV---TRMVADLLGELKLNVRE 566
+ E+K+ C T A++ TR D L E K++ R+
Sbjct: 236 ----------------EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE-KMHARD 278
Query: 567 -----IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY 621
+H Q R + EFR +L+T+D+ ARG+D V+LVI LP++RE Y
Sbjct: 279 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 338
Query: 622 IH 623
IH
Sbjct: 339 IH 340
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 128/210 (60%), Gaps = 16/210 (7%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F ++ + + G+ K T +Q +P+ L+G+D++ A+TG+GKT AF LP +
Sbjct: 45 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 104
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--VVIGGTRLAL 398
++++P QR + LV+ PTRELA Q + + L SIGVQ V++GG ++
Sbjct: 105 LLETP-----QR---LFALVLTPTRELAFQISEQFEAL---GSSIGVQSAVIVGGID-SM 152
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
Q A I++ATPGRL DH+ENT GF R +K LV+DEAD +L+M F +++KI
Sbjct: 153 SQSLALAKKPHIIIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMDFETEVDKI 210
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALK 488
+ +P+ R+T LFSAT+ ++V+++ ALK
Sbjct: 211 LKVIPRDRKTFLFSATMTKKVQKLQRAALK 240
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 214/419 (51%), Gaps = 54/419 (12%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSI 338
FD+ ++ LKGI ++K + +QE LP+LL ++++A++++GTGKT AF S+
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF---SL 63
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
++ + P D + + + P+RELA Q + K+ I Q+++ +
Sbjct: 64 TMLTRVNPEDASPQ-----AICLAPSRELARQTLEVVQEMGKF-TKITSQLIVPDSF--- 114
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM-GFRKDIEK 457
+K Q N Q++V TPG + D + +L +K+ VLDEAD++LD G +
Sbjct: 115 -EKNKQIN-AQVIVGTPGTVLDLMRRKL---MQLQKIKIFVLDEADNMLDQQGLGDQCIR 169
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETH-EQVRQMHLVAP 516
+ +PK Q +LFSAT + VRQ K+ NT+E + E + + ++Q+++
Sbjct: 170 VKRFLPKDTQLVLFSATFADAVRQYA----KKIVPNANTLELQTNEVNVDAIKQLYMDCK 225
Query: 517 LDL-HFPLLYVLLREHVADNPEYKVLVFCTTAM--VTRMVADLL-GELKLNVREI---HS 569
+ F +L L Y V+ ++ + T+ A++L G+LK E+ H
Sbjct: 226 NEADKFDVLTEL----------YGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 275
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPS------DREQYIH 623
R R+ D+FR+ + +L+T++V ARG+D P V++V+ LP+ D YIH
Sbjct: 276 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
Query: 624 RLGRTGRKGKEGQGILLLAPWEEF-FLSTIK----DLPILKAPVPSVDPDTKKKVERAL 677
R+GRTGR G++G I + F LS I+ D+ + + P D + +K V++ L
Sbjct: 336 RIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWD-EVEKIVKKVL 393
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 214/419 (51%), Gaps = 54/419 (12%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSI 338
FD+ ++ LKGI ++K + +QE LP+LL ++++A++++GTGKT AF S+
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF---SL 63
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
++ + P D + + + P+RELA Q + K+ I Q+++ +
Sbjct: 64 TMLTRVNPEDASPQ-----AICLAPSRELARQTLEVVQEMGKF-TKITSQLIVPDSF--- 114
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM-GFRKDIEK 457
+K Q N Q++V TPG + D + +L +K+ VLDEAD++LD G +
Sbjct: 115 -EKNKQIN-AQVIVGTPGTVLDLMRRKL---MQLQKIKIFVLDEADNMLDQQGLGDQCIR 169
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETH-EQVRQMHLVAP 516
+ +PK Q +LFSAT + VRQ K+ NT+E + E + + ++Q+++
Sbjct: 170 VKRFLPKDTQLVLFSATFADAVRQYA----KKIVPNANTLELQTNEVNVDAIKQLYMDCK 225
Query: 517 LDL-HFPLLYVLLREHVADNPEYKVLVFCTTAM--VTRMVADLL-GELKLNVREI---HS 569
+ F +L L Y ++ ++ + T+ A++L G+LK E+ H
Sbjct: 226 NEADKFDVLTEL----------YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 275
Query: 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPS------DREQYIH 623
R R+ D+FR+ + +L+T++V ARG+D P V++V+ LP+ D YIH
Sbjct: 276 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
Query: 624 RLGRTGRKGKEGQGILLLAPWEEF-FLSTIK----DLPILKAPVPSVDPDTKKKVERAL 677
R+GRTGR G++G I + F LS I+ D+ + + P D + +K V++ L
Sbjct: 336 RIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWD-EVEKIVKKVL 393
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 177/376 (47%), Gaps = 47/376 (12%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSI 338
F++ + L+G+ G+ + + +QE LP++L ++++A++++GTGKT AF+L +
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
V+ + P L L PT ELA Q + K++P + + + G +L
Sbjct: 154 S------QVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEK 457
QK + QI++ TPG + D + +KV VLDEAD ++ G + +
Sbjct: 206 GQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQGHQDQSIR 259
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVR 509
I +P+ Q LLFSAT + V + I LKR+ EET + ++
Sbjct: 260 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE-----------EETLDTIK 308
Query: 510 QMH-LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIH 568
Q + L + D F L L + ++FC T +A L + V +
Sbjct: 309 QYYVLCSSRDEKFQALCNLYGAITI----AQAMIFCHTRKTASWLAAELSKEGHQVALLS 364
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDR------EQYI 622
R V + FR+ K +LVT++V ARG+D V++VI LP D+ E Y+
Sbjct: 365 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 424
Query: 623 HRLGRTGRKGKEGQGI 638
HR+GRTGR GK G +
Sbjct: 425 HRIGRTGRFGKRGLAV 440
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 177/376 (47%), Gaps = 47/376 (12%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSI 338
F++ + L+G+ G+ + + +QE LP++L ++++A++++GTGKT AF+L +
Sbjct: 43 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 102
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
V+ + P L L PT ELA Q + K++P + + + G +L
Sbjct: 103 S------QVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 154
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEK 457
QK + QI++ TPG + D + +KV VLDEAD ++ G + +
Sbjct: 155 GQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQGHQDQSIR 208
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVR 509
I +P+ Q LLFSAT + V + I LKR+ EET + ++
Sbjct: 209 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE-----------EETLDTIK 257
Query: 510 QMH-LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIH 568
Q + L + D F L L + ++FC T +A L + V +
Sbjct: 258 QYYVLCSSRDEKFQALCNLYGAITI----AQAMIFCHTRKTASWLAAELSKEGHQVALLS 313
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDR------EQYI 622
R V + FR+ K +LVT++V ARG+D V++VI LP D+ E Y+
Sbjct: 314 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 373
Query: 623 HRLGRTGRKGKEGQGI 638
HR+GRTGR GK G +
Sbjct: 374 HRIGRTGRFGKRGLAV 389
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 177/376 (47%), Gaps = 47/376 (12%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSI 338
F++ + L+G+ G+ + + +QE LP++L ++++A++++GTGKT AF+L +
Sbjct: 64 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 123
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
V+ + P L L PT ELA Q + K++P + + + G +L
Sbjct: 124 S------QVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 175
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEK 457
QK + QI++ TPG + D + +KV VLDEAD ++ G + +
Sbjct: 176 GQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQGHQDQSIR 229
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVR 509
I +P+ Q LLFSAT + V + I LKR+ EET + ++
Sbjct: 230 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE-----------EETLDTIK 278
Query: 510 QMH-LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIH 568
Q + L + D F L L + ++FC T +A L + V +
Sbjct: 279 QYYVLCSSRDEKFQALCNLYGAITI----AQAMIFCHTRKTASWLAAELSKEGHQVALLS 334
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDR------EQYI 622
R V + FR+ K +LVT++V ARG+D V++VI LP D+ E Y+
Sbjct: 335 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 394
Query: 623 HRLGRTGRKGKEGQGI 638
HR+GRTGR GK G +
Sbjct: 395 HRIGRTGRFGKRGLAV 410
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 177/376 (47%), Gaps = 47/376 (12%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSI 338
F++ + L+G+ G+ + + +QE LP++L ++++A++++GTGKT AF+L +
Sbjct: 27 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 86
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
V+ + P L L PT ELA Q + K++P + + + G +L
Sbjct: 87 S------QVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 138
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEK 457
QK + QI++ TPG + D + +KV VLDEAD ++ G + +
Sbjct: 139 GQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQGHQDQSIR 192
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICH--------IALKRDHEFINTVEEGSEETHEQVR 509
I +P+ Q LLFSAT + V + I LKR+ EET + ++
Sbjct: 193 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE-----------EETLDTIK 241
Query: 510 QMH-LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIH 568
Q + L + D F L L + ++FC T +A L + V +
Sbjct: 242 QYYVLCSSRDEKFQALCNLYGAITI----AQAMIFCHTRKTASWLAAELSKEGHQVALLS 297
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDR------EQYI 622
R V + FR+ K +LVT++V ARG+D V++VI LP D+ E Y+
Sbjct: 298 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 357
Query: 623 HRLGRTGRKGKEGQGI 638
HR+GRTGR GK G +
Sbjct: 358 HRIGRTGRFGKRGLAV 373
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 13/208 (6%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ + G T +Q A LP+ L+GKD++ +A+TGTGKT+AF LP E + S R
Sbjct: 13 LEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRK 72
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
R LV+ PTRELA Q A+E L P + V V GGT +QK
Sbjct: 73 PR-----ALVLTPTRELALQVASE---LTAVAPHLKVVAVYGGTGYG-KQKEALLRGADA 123
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
+VATPGR D++ +R V+V VLDEAD +L MGF +++E +++A P RQTLL
Sbjct: 124 VVATPGRALDYLRQGVLDLSR---VEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 471 FSATVPEEVRQICHIALKRDHEFINTVE 498
FSAT+P +++ +K + IN ++
Sbjct: 181 FSATLPSWAKRLAERYMK-NPVLINVIK 207
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 125/215 (58%), Gaps = 12/215 (5%)
Query: 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
+ F+ + L GI + G+EK + +QE ++P+ L G+D+LA+AK GTGK+ A+L+P +
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
E + D ++ I +VI PTRELA Q + + K+ V GGT L
Sbjct: 63 ERL--------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458
+ R+ + +++ATPGR+ D I+ G A ++ V+++VLDEAD LL F + +E I
Sbjct: 115 DIMRLD-DTVHVVIATPGRILDLIKK--GVA-KVDHVQMIVLDEADKLLSQDFVQIMEDI 170
Query: 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEF 493
I +PK RQ LL+SAT P V++ + L++ +E
Sbjct: 171 ILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 13/208 (6%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ + G T ++ A LP+ L+GKD++ +A+TGTGKT+AF LP E + S R
Sbjct: 13 LEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRK 72
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
R LV+ PTRELA Q A+E L P + V V GGT +QK
Sbjct: 73 PR-----ALVLTPTRELALQVASE---LTAVAPHLKVVAVYGGTGYG-KQKEALLRGADA 123
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
+VATPGR D++ +R V+V VLDEAD +L MGF +++E +++A P RQTLL
Sbjct: 124 VVATPGRALDYLRQGVLDLSR---VEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 471 FSATVPEEVRQICHIALKRDHEFINTVE 498
FSAT+P +++ +K + IN ++
Sbjct: 181 FSATLPSWAKRLAERYMK-NPVLINVIK 207
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 129/232 (55%), Gaps = 21/232 (9%)
Query: 261 GMSVAISSPGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVL 320
+ V+++ P + + E+ FD+ + I A Y++ T +Q+ +P +L+ +D++
Sbjct: 6 SIPVSVTGPDYSATNVIEN-FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 64
Query: 321 AKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR------PPILVLVICPTRELATQAATE 374
A A+TG+GKT AFL+P I ++ D +Q+R P L+L PTRELA Q +E
Sbjct: 65 ACAQTGSGKTAAFLIPIINHLVCQ---DLNQQRYSKTAYPKCLILA--PTRELAIQILSE 119
Query: 375 ASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434
+ P + VV GG + + +Q C +LVATPGRL D IE L
Sbjct: 120 SQKFSLNTP-LRSCVVYGGADTHSQIREVQMG-CHLLVATPGRLVDFIEKN---KISLEF 174
Query: 435 VKVLVLDEADHLLDMGFRKDIEKII--AAVPK--QRQTLLFSATVPEEVRQI 482
K +VLDEAD +LDMGF I KII + +P RQTL+FSAT P+E++++
Sbjct: 175 CKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKL 226
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
L+ I D G+E + VQ +P + G DVL +AK+G GKT F+L +++ + PV
Sbjct: 26 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ---QLEPVTGQ 82
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
+ VLV+C TRELA Q + E KY P++ V V GG + +++ ++ N I
Sbjct: 83 -----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 137
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTL 469
+V TPGR+ N + L +K +LDE D +L+ + R+D+++I P ++Q +
Sbjct: 138 VVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 194
Query: 470 LFSATVPEEVRQIC 483
+FSAT+ +E+R +C
Sbjct: 195 MFSATLSKEIRPVC 208
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 291 LKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRD 350
LK I G K T +Q P++L+G D++ A+TGTGKT+++L+P + + S P+ R+
Sbjct: 32 LKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGF-IHLDSQPISRE 90
Query: 351 QRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQI 410
QR P + LV+ PTRELA E S KY + I G R Q + I
Sbjct: 91 QRNGPGM-LVLTPTRELALHVEAECS---KYSYKGLKSICIYGGRNRNGQIEDISKGVDI 146
Query: 411 LVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470
++ATPGRL D N + L + LV+DEAD +LDM F I KI+ V RQT++
Sbjct: 147 IIATPGRLNDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVM 203
Query: 471 FSATVPEEVRQICHIALK 488
SAT P+ VRQ+ LK
Sbjct: 204 TSATWPDTVRQLALSYLK 221
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 15/207 (7%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLP 336
+E++F + ++ IK + K T +QE +P L+G+ + +++TGTGKT A+LLP
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP 61
Query: 337 SIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPS---IGVQVVIGG 393
E + R + ++ PTRELATQ E + K+ P I + +IGG
Sbjct: 62 IXEKI--------KPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGG 113
Query: 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453
T +++ P I++ TPGR+ D I A + +LV+DEAD LD GF
Sbjct: 114 TDKQKALEKLNVQP-HIVIGTPGRINDFIREQA---LDVHTAHILVVDEADLXLDXGFIT 169
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVR 480
D+++I A PK Q L+FSAT+PE+++
Sbjct: 170 DVDQIAARXPKDLQXLVFSATIPEKLK 196
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 181/387 (46%), Gaps = 39/387 (10%)
Query: 305 VQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC 362
+QE LP+LL ++++ ++++GTGKT AF L + V S P +P + L
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP------KPQAICL--A 196
Query: 363 PTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI 422
P+RELA Q + + KY V+ G + ++ A QI++ TPG + D +
Sbjct: 197 PSRELARQIMDVVTEMGKYTE---VKTAFGIKDSVPKGAKIDA---QIVIGTPGTVMDLM 250
Query: 423 ENTAGFATRLMGVKVLVLDEADHLLDM-GFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQ 481
+ A +KV VLDEAD++LD G +I +P+ Q +LFSAT E V +
Sbjct: 251 KRRQLDAR---DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEK 307
Query: 482 ICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVL 541
+E EE S E ++Q+++ + H Y +L E + +
Sbjct: 308 YAERFAPNANEIRLKTEELSVEG---IKQLYMDCQSEEH---KYNVLVELYGLLTIGQSI 361
Query: 542 VFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGV 601
+FC +A + V + + R + D FR +LVT++V ARG+
Sbjct: 362 IFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421
Query: 602 DYPDVTLVIQVGLPSDR------EQYIHRLGRTGRKGKEGQGILLL---APWEEFFLSTI 652
D V LV+ +P D+ + Y+HR+GRTGR G+ G I + WEE ++ I
Sbjct: 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEE--MNAI 479
Query: 653 KDLPILKAPVPSVDPDTKKKVERALSH 679
++ + P+ V D +++E+ + +
Sbjct: 480 QEY--FQRPITRVPTDDYEELEKVVKN 504
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 9/215 (4%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + A + I + + T +Q PV L G D++ A+TG+GKT+++LLP+I
Sbjct: 45 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 104
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ P ++R PI LV+ PTRELA Q A+ + + + GG +
Sbjct: 105 INHQPFLERGDG--PI-CLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQI 160
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ ++ +I +ATPGRL D +E T L LVLDEAD +LDMGF I KI+
Sbjct: 161 RDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 216
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
+ RQTL++SAT P+EVRQ+ LK D+ IN
Sbjct: 217 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHIN 250
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 9/215 (4%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV 340
F + + A + I + + T +Q PV L G D++ A+TG+GKT+++LLP+I
Sbjct: 31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 90
Query: 341 VIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400
+ P ++R PI LV+ PTRELA Q A+ + + + GG +
Sbjct: 91 INHQPFLERGDG--PI-CLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQI 146
Query: 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460
+ ++ +I +ATPGRL D +E T L LVLDEAD +LDMGF I KI+
Sbjct: 147 RDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 202
Query: 461 AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN 495
+ RQTL++SAT P+EVRQ+ LK D+ IN
Sbjct: 203 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHIN 236
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 14/204 (6%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+FD + L+G+ G+E+ + +Q+ + +++G DVLA+A++GTGKT F + +++
Sbjct: 22 KFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+D + P L+L PTRELA Q + L +H I V IGGT +
Sbjct: 82 ------RIDTSVKAPQALML--APTRELALQIQ-KVVMALAFHMDIKVHACIGGTSFVED 132
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++ QI+V TPGR+ D+I+ R +K+ +LDEAD +L GF++ I +I
Sbjct: 133 AEGLR--DAQIVVGTPGRVFDNIQRR---RFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 460 AAVPKQRQTLLFSATVPEEVRQIC 483
+P Q +L SAT+P +V ++
Sbjct: 188 TLLPPTTQVVLLSATMPNDVLEVT 211
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 14/204 (6%)
Query: 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIE 339
+FD + L+G+ G+E+ + +Q+ + +++G DVLA+A++GTGKT F + +++
Sbjct: 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74
Query: 340 VVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399
+D + P L+L PTRELA Q + L +H I V IGGT +
Sbjct: 75 ------RIDTSVKAPQALML--APTRELALQIQ-KVVMALAFHMDIKVHACIGGTSFVED 125
Query: 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459
+ ++ QI+V TPGR+ D+I+ R +K+ +LDEAD +L GF++ I +I
Sbjct: 126 AEGLR--DAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 460 AAVPKQRQTLLFSATVPEEVRQIC 483
+P Q +L SAT+P +V ++
Sbjct: 181 TLLPPTTQVVLLSATMPNDVLEVT 204
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 18/205 (8%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF---LLPS 337
FD ++ L+GI G+EK + +Q+ + +KG DV+A+A++GTGKT F +L
Sbjct: 32 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 91
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
+E+ K LV+ PTRELA Q L Y + IGGT +
Sbjct: 92 LEIEFKETQ-----------ALVLAPTRELAQQIQKVILALGDYMGAT-CHACIGGTNVR 139
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457
E +++QA I+V TPGR+ D + N + + +K+ VLDEAD +L GF+ I +
Sbjct: 140 NEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKW--IKMFVLDEADEMLSRGFKDQIYE 196
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQI 482
I + Q +L SAT+P +V ++
Sbjct: 197 IFQKLNTSIQVVLLSATMPTDVLEV 221
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 538 YKVLVFCTTAMVTRMVADLL-GELK--LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594
YK ++F T T + +L E K L + E H + Q+ RT + F+K + ILV +
Sbjct: 34 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT 93
Query: 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654
DV ARG+D+P+V V+Q+G+PS+ YIHR+GRT R GKEG +L + E F+ ++D
Sbjct: 94 DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 153
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 538 YKVLVFCTTAMVTRMVADLL-GELK--LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594
YK ++F T T + +L E K L + E H + Q+ RT + F+K + ILV +
Sbjct: 34 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT 93
Query: 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654
DV ARG+D+P+V V+Q+G+PS+ YIHR+GRT R GKEG +L + E F+ ++D
Sbjct: 94 DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 153
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 538 YKVLVFCTTAMVTRMVADLL-GELK--LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594
YK ++F T T + +L E K L + E H + Q+ RT + F+K + ILV +
Sbjct: 34 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT 93
Query: 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654
DV ARG+D+P+V V+Q+G+PS+ YIHR+GRT R GKEG +L + E F+ ++D
Sbjct: 94 DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 153
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 92.4 bits (228), Expect = 9e-19, Method: Composition-based stats.
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 24/208 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAF---LLPS 337
FD ++S L+GI G+E + +Q+ + + G DV+A+A++GTG T F +L
Sbjct: 17 FDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQ 76
Query: 338 IEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397
IE+ + + LV+ PTRELA Q L Y + IGGT +
Sbjct: 77 IELDLXATQ-----------ALVLAPTRELAQQIQXVVMALGDYMGA-SCHACIGGTNVR 124
Query: 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG---VKVLVLDEADHLLDMGFRKD 454
E + +Q I+V TPGR+ D + R + + + VLDEAD +L GF
Sbjct: 125 AEVQXLQMEAPHIIVGTPGRVFDMLNR------RYLSPXYIXMFVLDEADEMLSRGFXDQ 178
Query: 455 IEKIIAAVPKQRQTLLFSATVPEEVRQI 482
I I + Q +L SAT+P +V ++
Sbjct: 179 IYDIFQXLNSNTQVVLLSATMPSDVLEV 206
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 114/211 (54%), Gaps = 23/211 (10%)
Query: 273 DSFMSE-SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTV 331
D ++E + F+ +S L+G++ AG+E+ + VQ +P+ G D++ +AK+GTGKT
Sbjct: 17 DVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTC 76
Query: 332 AFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI 391
F +++ ++ + +L++ PTRE+A Q + + + + V I
Sbjct: 77 VFSTIALDSLVLENLSTQ--------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFI 128
Query: 392 GGTRLALEQKRMQANPCQILVATPGRLRDHIE----NTAGFATRLMGVKVLVLDEADHLL 447
GGT L+ ++ R++ C I V +PGR++ IE N +++ +LDEAD LL
Sbjct: 129 GGTPLSQDKTRLKK--CHIAVGSPGRIKQLIELDYLNPG-------SIRLFILDEADKLL 179
Query: 448 DMG-FRKDIEKIIAAVPKQRQTLLFSATVPE 477
+ G F++ I I +++P +Q L SAT PE
Sbjct: 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPE 210
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580
F LL +L + +NP+ ++FC T + D L +L +IH Q R V
Sbjct: 23 FSLLKDVL---MTENPD-SCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVM 78
Query: 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640
+EF++ + LV +DV+ARG+D +++LVI LP ++E Y+HR GRTGR G +G+ I
Sbjct: 79 NEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISF 138
Query: 641 LAPWEEFFLSTIKD 654
+ +E+ FL+ I++
Sbjct: 139 VTAFEKRFLADIEE 152
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 20/223 (8%)
Query: 273 DSFMSESRFDQ-CSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTV 331
D + + DQ I++ L+ I DAG++ T +Q +PV+L G+++LA A TG+GKT+
Sbjct: 22 DPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 81
Query: 332 AFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVI 391
AF +P I + +K P ++ R L+I PTRELA+Q E L+K G ++ +
Sbjct: 82 AFSIP-ILMQLKQ-PANKGFR-----ALIISPTRELASQIHRE---LIKISEGTGFRIHM 131
Query: 392 GGTRLALEQKRM---QANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD 448
+ A+ K+ + ILV TP RL ++ L V+ LV+DE+D L +
Sbjct: 132 IH-KAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP-GIDLASVEWLVVDESDKLFE 189
Query: 449 ---MGFRKDIEKIIAAVPKQR-QTLLFSATVPEEVRQICHIAL 487
GFR + I A + + +FSAT +V Q C + L
Sbjct: 190 DGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNL 232
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFL 334
S FD+ ++ LKGI ++K + +QE LP+LL ++++A++++GTGKT AF
Sbjct: 20 SAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF- 78
Query: 335 LPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT 394
S+ ++ + P D + + + P+RELA Q + K+ I Q+++ +
Sbjct: 79 --SLTMLTRVNPEDASPQ-----AICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDS 130
Query: 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRK 453
+K Q N Q++V TPG + D + +L +K+ VLDEAD++LD G
Sbjct: 131 F----EKNKQIN-AQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLDEADNMLDQQGLGD 182
Query: 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQ 481
++ +PK Q +LFSAT + VRQ
Sbjct: 183 QCIRVKRFLPKDTQLVLFSATFADAVRQ 210
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 272 HDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGK 329
+ S F++ + L+G+ G+ + + +QE LP++L ++++A++++GTGK
Sbjct: 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGK 77
Query: 330 TVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQV 389
T AF+L + V+ + P L L PT ELA Q + K++P + +
Sbjct: 78 TAAFVLAMLS------QVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAY 129
Query: 390 VIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-D 448
+ G +L QK + QI++ TPG + D + +KV VLDEAD ++
Sbjct: 130 AVRGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIAT 183
Query: 449 MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICH--------IALKRDHE 492
G + +I +P+ Q LLFSAT + V + I LKR+ E
Sbjct: 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 235
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSI 338
F++ + L+G+ G+ + + +QE LP++L ++++A++++GTGKT AF+L +
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 339 EVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL 398
V+ + P L L PT ELA Q + K++P + + + G +L
Sbjct: 154 S------QVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205
Query: 399 EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEK 457
QK + QI++ TPG + D + +KV VLDEAD ++ G + +
Sbjct: 206 GQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQGHQDQSIR 259
Query: 458 IIAAVPKQRQTLLFSATVPEEVRQICH--------IALKRD 490
I +P+ Q LLFSAT + V + I LKR+
Sbjct: 260 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 541 LVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARG 600
++FC ++ ++A + +L + IH++ Q +R RV +FR LV +D+ RG
Sbjct: 48 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG 107
Query: 601 VDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD-LPILK 659
+D V +VI P E Y+HR+GR+GR G G I L+ + F L +I++ L
Sbjct: 108 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEI 167
Query: 660 APVPS 664
P+PS
Sbjct: 168 KPIPS 172
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 541 LVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARG 600
LVF T + D L IH + Q R +FR K ILV + V+ARG
Sbjct: 50 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109
Query: 601 VDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPIL-- 658
+D +V VI LPSD E+Y+HR+GRTGR G G L + + E ++ KDL L
Sbjct: 110 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG---LATSFFNERNINITKDLLDLLV 166
Query: 659 --KAPVPS 664
K VPS
Sbjct: 167 EAKQEVPS 174
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 556 LLGELKLNVREI---HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQV 612
L G+LK E+ H R R+ D+FR+ + +L+T++V ARG+D P V++V+
Sbjct: 51 LYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY 110
Query: 613 GLPS------DREQYIHRLGRTGRKGKEGQGILLLAPWEEF-FLSTIK----DLPILKAP 661
LP+ D YIHR+GRTGR G++G I + F LS I+ D+ + + P
Sbjct: 111 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 170
Query: 662 VPSVDPDTKKKVERAL 677
D + +K V++ L
Sbjct: 171 TDDWD-EVEKIVKKVL 185
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 567 IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLG 626
IH K Q RT+ + FR+ K +LV +DV+++G+D+P + VI +P + E Y+HR+G
Sbjct: 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIG 143
Query: 627 RTGRKGKEG 635
RTG G G
Sbjct: 144 RTGCSGNTG 152
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 15/145 (10%)
Query: 541 LVFCTTAMVTRMVADLLGELKLNVREI---HSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597
++F T + L G+LK E+ H R R+ D+FR+ + +L+T++V
Sbjct: 40 IIFVATKKTANV---LYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 96
Query: 598 ARGVDYPDVTLVIQVGLPS------DREQYIHRLGRTGRKGKEGQGILLLAPWEEF-FLS 650
ARG+D P V+ V+ LP+ D YIHR+GRTGR G++G I + F LS
Sbjct: 97 ARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILS 156
Query: 651 TIKDL--PILKAPVPSVDPDTKKKV 673
I+ I VP+ D D +K+
Sbjct: 157 AIQKYFGDIEXTRVPTDDWDEVEKI 181
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Query: 548 MVTRMVADLL-GELKLNVREI---HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDY 603
+ T+ A++L G+LK E+ H R R+ D+FR+ + +L+T++V ARG+D
Sbjct: 44 VATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 103
Query: 604 PDVTLVIQVGLPS------DREQYIHRLGRTGRKGKEGQGILLLAPWEEF-FLSTIKDL- 655
P V+ V+ LP+ D YIHR+GRTGR G++G I + F LS I+
Sbjct: 104 PTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 163
Query: 656 -PILKAPVPSVDPDTKKKV 673
I VP+ D D +K+
Sbjct: 164 GDIEXTRVPTDDWDEVEKI 182
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 531 HVADNPE-YKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589
H+ PE + +VF +A+ L E +N + Q R + +
Sbjct: 23 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82
Query: 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL 649
+LV +DV+ARG+D PDV+ V +P + Y+HR+GRT R G++G I L+ + L
Sbjct: 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 142
Query: 650 STIK---DLPILKAPVPSVDPDTK 670
+ + PI + + P T+
Sbjct: 143 GKVGRYIEEPIKARVIDELRPKTR 166
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
+ ++FC T + L K V I+S PQ R + EFR IL+++D+ A
Sbjct: 32 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91
Query: 599 RGVDYPDVTLVIQVGLPSDREQYIHR 624
RG+D V+LVI LP+++E YIHR
Sbjct: 92 RGIDVQQVSLVINYDLPANKENYIHR 117
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 36/142 (25%)
Query: 539 KVLVFCTT-----AMVTRMVAD------LLGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587
+ ++FC T + M+ D L GEL + R + FR K
Sbjct: 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTV-----------EQRASIIQRFRDGK 84
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPS------DREQYIHRLGRTGRKGKEGQGILL- 640
+L+T++V ARG+D VT+V+ LP D E Y+HR+GRTGR GK+G +
Sbjct: 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 144
Query: 641 -------LAPWEEFFLSTIKDL 655
L ++ F S+IK L
Sbjct: 145 EVDELPSLMKIQDHFNSSIKQL 166
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
+V++F + +A LL E IH PQ R +F+ + ILV +++
Sbjct: 33 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 92
Query: 599 RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA 642
RG+D V + +P D + Y+HR+ R GR G +G I ++
Sbjct: 93 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 136
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
+ +VF T T +A L L + +H Q R RV FR+ + +LV +DV+A
Sbjct: 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89
Query: 599 RGVDYPDVTLVIQVGLPSDREQYIH 623
RG+D P V LV+ +P E Y H
Sbjct: 90 RGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
+ +VF T T +A L L + +H Q R RV FR+ + +LV +DV+A
Sbjct: 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92
Query: 599 RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWE 645
RG+D P V LV+ LP E Y HR GRTGR G+ G+ +LL P E
Sbjct: 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 145/363 (39%), Gaps = 47/363 (12%)
Query: 298 GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357
GY++ QE + +L G+D L TG GK++ + +P++ + + V P++
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS------PLI 75
Query: 358 VLVICPTRELATQAATEASTLLKYHPSIGVQV-VIGGTRLALEQKRMQANPCQILVATPG 416
L+ +L QA A+ L + Q+ V+ G R ++L P
Sbjct: 76 SLMKDQVDQL--QANGVAAACLNSTQTREQQLEVMTGCR---------TGQIRLLYIAPE 124
Query: 417 RLR--DHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ---TLLF 471
RL + +E+ A + L+ V DEA + G D AA+ + RQ TL F
Sbjct: 125 RLMLDNFLEHLAHWNPVLLAV-----DEAHCISQWG--HDFRPEYAALGQLRQRFPTLPF 177
Query: 472 ---SATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL--VAPLDLHFPLLYV 526
+AT + RQ L + I S +R M + PLD
Sbjct: 178 MALTATADDTTRQDIVRLLGLNDPLIQI----SSFDRPNIRYMLMEKFKPLDQ------- 226
Query: 527 LLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS 586
L +V + +++C + A L ++ H+ + R V ++F++
Sbjct: 227 -LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD 285
Query: 587 KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646
I+V + G++ P+V V+ +P + E Y GR GR G + +L P +
Sbjct: 286 DLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345
Query: 647 FFL 649
+L
Sbjct: 346 AWL 348
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 135/365 (36%), Gaps = 51/365 (13%)
Query: 298 GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357
GY++ QE + +L G+D L TG GK++ + +P++ + L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLL--------------NGL 67
Query: 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQ-----ILV 412
+V+ P L + + GV + EQ+ C+ +L
Sbjct: 68 TVVVSPLISLXKDQVDQLQ-------ANGVAAACLNSTQTREQQLEVXTGCRTGQIRLLY 120
Query: 413 ATPGRLR--DHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ--- 467
P RL + +E+ A + L+ V DEA + G D AA+ + RQ
Sbjct: 121 IAPERLXLDNFLEHLAHWNPVLLAV-----DEAHCISQWG--HDFRPEYAALGQLRQRFP 173
Query: 468 TLLF---SATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLL 524
TL F +AT + RQ L + I + + PLD
Sbjct: 174 TLPFXALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYXLXEK--FKPLDQ----- 226
Query: 525 YVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR 584
L +V + +++C + A L ++ H+ + R V ++F+
Sbjct: 227 ---LXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ 283
Query: 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW 644
+ I+V + G++ P+V V+ +P + E Y GR GR G + L P
Sbjct: 284 RDDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPA 343
Query: 645 EEFFL 649
+ +L
Sbjct: 344 DXAWL 348
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 111/441 (25%), Positives = 178/441 (40%), Gaps = 77/441 (17%)
Query: 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376
+++L A TG GKT L+ + + K +D ++ I P R L +
Sbjct: 96 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155
Query: 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436
L + I V + G +L E + + QI+V TP + D I G T V+
Sbjct: 156 KRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 437 VLVLDEADHLLDMGFRKDIEKIIA-AVPKQRQT------LLFSATVP--EEVRQICHI-A 486
+++LDE HLL +E ++A A+ T + SAT+P E+V +
Sbjct: 210 LIILDEI-HLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 268
Query: 487 LKRDHEFINTVEEGS-EETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFC- 544
K F N+ E+T+ + + + + ++Y + EH N +VLVF
Sbjct: 269 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN---QVLVFVH 325
Query: 545 ---TTAMVTRMVADLLGE---LKLNVRE------------------------------IH 568
T R + D+ E L L +RE H
Sbjct: 326 SRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI---QVGLPSDRE------ 619
+ + RT V D F +LV++ A GV+ P T++I QV P
Sbjct: 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGA 445
Query: 620 -QYIHRLGRTGR--KGKEGQGILLLAPWE-EFFLSTI-KDLPILKAPVPSVDPDTKKKVE 674
+ LGR GR +G+GIL+ + E +++LS + + LPI ++ + S PD E
Sbjct: 446 LDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPI-ESQMVSKLPDM-LNAE 503
Query: 675 RALSHVEMKNKEAAYQAWLGY 695
L +V+ K+A WLGY
Sbjct: 504 IVLGNVQ-NAKDAV--NWLGY 521
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 111/441 (25%), Positives = 178/441 (40%), Gaps = 77/441 (17%)
Query: 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376
+++L A TG GKT L+ + + K +D ++ I P R L +
Sbjct: 96 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155
Query: 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436
L + I V + G +L E + + QI+V TP + D I G T V+
Sbjct: 156 KRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 437 VLVLDEADHLLDMGFRKDIEKIIA-AVPKQRQT------LLFSATVP--EEVRQICHI-A 486
+++LDE HLL +E ++A A+ T + SAT+P E+V +
Sbjct: 210 LIILDEI-HLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 268
Query: 487 LKRDHEFINTVEEGS-EETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFC- 544
K F N+ E+T+ + + + + ++Y + EH N +VLVF
Sbjct: 269 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN---QVLVFVH 325
Query: 545 ---TTAMVTRMVADLLGE---LKLNVRE------------------------------IH 568
T R + D+ E L L +RE H
Sbjct: 326 SRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385
Query: 569 SRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI---QVGLPSDRE------ 619
+ + RT V D F +LV++ A GV+ P T++I QV P
Sbjct: 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGA 445
Query: 620 -QYIHRLGRTGR--KGKEGQGILLLAPWE-EFFLSTI-KDLPILKAPVPSVDPDTKKKVE 674
+ LGR GR +G+GIL+ + E +++LS + + LPI ++ + S PD E
Sbjct: 446 LDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPI-ESQMVSKLPDM-LNAE 503
Query: 675 RALSHVEMKNKEAAYQAWLGY 695
L +V+ K+A WLGY
Sbjct: 504 IVLGNVQ-NAKDAV--NWLGY 521
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%)
Query: 541 LVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARG 600
+++C + + V L L ++ H+ +T V ++ ++ ++V + G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330
Query: 601 VDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652
+D PDV VI + E Y GR GR + IL + F +S++
Sbjct: 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSI 338
EK +Q T+ V + GK+V TG GK++ + LP++
Sbjct: 43 EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL 81
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 25/196 (12%)
Query: 285 SISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKS 344
SIS+ ++ +K+ G E++ Q + + GK++L T GKT+ + + IK
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 345 PPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQ 404
L + P R L A E K IG++ IG + E +
Sbjct: 69 GK-----------SLYVVPLRAL----AGEKYESFKKWEKIGLR--IGISTGDYESRDEH 111
Query: 405 ANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--- 461
C I+V T + I N A + + V LV+DE HLLD R +I+
Sbjct: 112 LGDCDIIVTTSEKADSLIRNRASW---IKAVSCLVVDEI-HLLDSEKRGATLEILVTKMR 167
Query: 462 -VPKQRQTLLFSATVP 476
+ K + + SAT P
Sbjct: 168 RMNKALRVIGLSATAP 183
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
K+ V M + ++ E KL + +H R Q + RV EF + + ILV++ V
Sbjct: 593 KLNVKSAVEMYEYLSKEVFPEFKLGL--MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650
Query: 599 RGVDYPDVTLVI-----QVGLPSDREQYIHRL-GRTGRKGKEGQGILLLA 642
G+D P +++ + GL +H+L GR GR G+E L++
Sbjct: 651 VGIDVPRANVMVIENPERFGLAQ-----LHQLRGRVGRGGQEAYCFLVVG 695
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
+VLV T ++ + D L E+ + V +HS R + + R K +LV ++
Sbjct: 453 RVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 512
Query: 599 RGVDYPDVTLVIQVGLPSDREQY-------IHRLGRTGRKGKEGQGIL 639
G+D P+V+LV L +D+E + I +GR R EG+ I+
Sbjct: 513 EGLDIPEVSLV--AILDADKEGFLRSERSLIQTIGRAARNA-EGRVIM 557
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
+VLV T ++ + D L E+ + V +HS R + + R K +LV ++
Sbjct: 447 RVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506
Query: 599 RGVDYPDVTLVIQVGLPSDREQY-------IHRLGRTGRKGKEGQGIL 639
G+D P+V+LV L +D+E + I +GR R EG+ I+
Sbjct: 507 EGLDIPEVSLV--AILDADKEGFLRSERSLIQTIGRAARNA-EGRVIM 551
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 528 LREHVADNPEYKVLVFC-TTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS 586
LRE + + + K+++F +V R+ L + I R + R + + FR
Sbjct: 340 LREILERHRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTG 393
Query: 587 KGLILVTSDVSARGVDYPDVTL-VIQVGLPSDREQYIHRLGRTGR--KGKE 634
+ +V+S V G+D PD + VI G S RE YI RLGR R KGK+
Sbjct: 394 RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSARE-YIQRLGRILRPSKGKK 443
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 528 LREHVADNPEYKVLVFCT-TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS 586
LRE + + + K+++F +V R+ L + I R + R + + FR
Sbjct: 105 LREILERHRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTG 158
Query: 587 KGLILVTSDVSARGVDYPDVTL-VIQVGLPSDREQYIHRLGRTGR--KGKE 634
+ +V+S V G+D PD + VI G S RE YI RLGR R KGK+
Sbjct: 159 RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSARE-YIQRLGRILRPSKGKK 208
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 527 LLREHVADNPEYKVLVFCT---TA--MVTRMVAD------LLGEL-KLNVREIHSRKPQS 574
++RE + K++VF TA +V +V D +G+ K N R + R+
Sbjct: 351 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQRE--- 407
Query: 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKE 634
+ + DEF + + +LV + V G+D P+V LV+ + I R GRTGR
Sbjct: 408 -QKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MP 465
Query: 635 GQGILLLA 642
G+ I+L+A
Sbjct: 466 GRVIILMA 473
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 528 LREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587
+RE V N + LV T + + D L E + V +HS R + + R K
Sbjct: 438 IRERVERNE--RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGK 495
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY-------IHRLGRTGRKG 632
+LV ++ G+D P+V+LV L +D+E + I +GR R
Sbjct: 496 YDVLVGINLLREGLDIPEVSLV--AILDADKEGFLRSERSLIQTIGRAARNA 545
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 528 LREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587
+RE V N + LV T + + D L E + V +HS R + + R K
Sbjct: 437 IRERVERNE--RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGK 494
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY-------IHRLGRTGRKG 632
+LV ++ G+D P+V+LV L +D+E + I +GR R
Sbjct: 495 YDVLVGINLLREGLDIPEVSLV--AILDADKEGFLRSERSLIQTIGRAARNA 544
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 528 LREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587
+RE V N + LV T + + D L E + V +HS R + + R K
Sbjct: 438 IRERVERNE--RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGK 495
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY-------IHRLGRTGRKG 632
+LV ++ G+D P+V+LV L +D+E + I +GR R
Sbjct: 496 YDVLVGINLLREGLDIPEVSLV--AILDADKEGFLRSERSLIQTIGRAARNA 545
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 528 LREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587
+RE V N + LV T + + D L E + V +HS R + + R K
Sbjct: 438 IRERVERNE--RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGK 495
Query: 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQY-------IHRLGRTGRKG 632
+LV ++ G+D P+V+LV L +D+E + I +GR R
Sbjct: 496 YDVLVGINLLREGLDIPEVSLV--AILDADKEGFLRSERSLIQTIGRAARNA 545
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598
+ LV T + + D L E + V +HS R + + R K +LV ++
Sbjct: 472 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 531
Query: 599 RGVDYPDVTLVIQVGLPSDREQY-------IHRLGRTGRKG 632
G+D P+V+LV L +D+E + I +GR R
Sbjct: 532 EGLDIPEVSLV--AILDADKEGFLRSERSLIQTIGRAARNA 570
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373
+ GK+ L A TG+GKT +L E ++ P R + + + P E
Sbjct: 261 INGKNALICAPTGSGKTFVSILIC-EHHFQNMPAGRKAK--VVFLATKVPVYE------- 310
Query: 374 EASTLLKYH---PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFAT 430
+ + K+H VQ + G + +++ + I+V TP L + E+ G T
Sbjct: 311 QQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS-DIIVVTPQILVNSFED--GTLT 367
Query: 431 RLMGVKVLVLDEA-----DHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV--------PE 477
L +++ DE +H ++ + +E+ + + Q L +A+V E
Sbjct: 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427
Query: 478 EVRQICHIALKRDHEFINTVEEGSEE 503
+ IC + D + I+TV E +E
Sbjct: 428 TIEHICSLCSYLDIQAISTVRENIQE 453
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373
+ GK+ L A TG+GKT +L E ++ P R + + + P E
Sbjct: 261 INGKNALICAPTGSGKTFVSILIC-EHHFQNMPAGR--KAKVVFLATKVPVYE------- 310
Query: 374 EASTLLKYH---PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFAT 430
+ + K+H VQ + G + +++ + I+V TP L + E+ G T
Sbjct: 311 QQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS-DIIVVTPQILVNSFED--GTLT 367
Query: 431 RLMGVKVLVLDEA-----DHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV--------PE 477
L +++ DE +H ++ + +E+ + + Q L +A+V E
Sbjct: 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427
Query: 478 EVRQICHIALKRDHEFINTVEEGSEE 503
+ IC + D + I+TV E +E
Sbjct: 428 TIEHICSLCSYLDIQAISTVRENIQE 453
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 547 AMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
A + M+ D LGE K I K SYR +D+ S + SD ++ GV + D
Sbjct: 459 ACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSD 517
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGR 627
Q+ + V +FR K +L+ + V+ G+D + +VI+ GL ++ + GR
Sbjct: 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 504
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 547 AMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605
A + M+ D LGE K I K SYR +D+ S + SD ++ GV + D
Sbjct: 459 ACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSD 517
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373
+ GK+ L A TG+GKT +L E ++ P R + + + P E
Sbjct: 20 INGKNALICAPTGSGKTFVSILIC-EHHFQNMPAGRKAK--VVFLATKVPVYE------- 69
Query: 374 EASTLLKYH---PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFAT 430
+ + K+H VQ + G + +++ + I+V TP L + E+ G T
Sbjct: 70 QQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS-DIIVVTPQILVNSFED--GTLT 126
Query: 431 RLMGVKVLVLDEA-----DHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV--------PE 477
L +++ DE +H ++ + +E+ + + Q L +A+V E
Sbjct: 127 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 186
Query: 478 EVRQICHIALKRDHEFINTVEEGSEE 503
+ IC + D + I+TV E +E
Sbjct: 187 TIEHICSLCSYLDIQAISTVRENIQE 212
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQR-RPPILVL 359
+M + Q A L+GK+++ TG+GKT + V I +D+ ++ P V+
Sbjct: 38 QMEVAQPA-----LEGKNIIICLPTGSGKT------RVAVYIAKDHLDKKKKASEPGKVI 86
Query: 360 VICPTRELATQAATEAST--LLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGR 417
V+ L Q + L K++ IG+ G T+L + + C I+++T
Sbjct: 87 VLVNKVLLVEQLFRKEFQPFLKKWYRVIGLS---GDTQLKISFPEV-VKSCDIIISTAQI 142
Query: 418 LRD---HIENTAGFATRLMGVKVLVLDEADH 445
L + ++EN +L ++++DE H
Sbjct: 143 LENSLLNLENGEDAGVQLSDFSLIIIDECHH 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,600,958
Number of Sequences: 62578
Number of extensions: 723861
Number of successful extensions: 1912
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1629
Number of HSP's gapped (non-prelim): 107
length of query: 747
length of database: 14,973,337
effective HSP length: 106
effective length of query: 641
effective length of database: 8,340,069
effective search space: 5345984229
effective search space used: 5345984229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)