Query 004518
Match_columns 747
No_of_seqs 547 out of 3764
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 00:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0342 ATP-dependent RNA heli 100.0 1.1E-81 2.3E-86 659.5 42.3 463 273-746 76-541 (543)
2 KOG0345 ATP-dependent RNA heli 100.0 3.9E-70 8.4E-75 568.1 36.7 444 279-737 4-461 (567)
3 KOG0343 RNA Helicase [RNA proc 100.0 2E-68 4.4E-73 562.8 34.5 437 278-729 68-513 (758)
4 KOG0330 ATP-dependent RNA heli 100.0 4.5E-68 9.8E-73 541.4 33.0 375 277-670 59-433 (476)
5 KOG0348 ATP-dependent RNA heli 100.0 1.4E-66 2.9E-71 547.7 37.6 450 271-726 128-660 (708)
6 KOG0331 ATP-dependent RNA heli 100.0 1.2E-65 2.5E-70 558.3 33.9 365 280-653 92-457 (519)
7 KOG0338 ATP-dependent RNA heli 100.0 1E-65 2.3E-70 538.1 30.6 361 278-654 180-543 (691)
8 COG0513 SrmB Superfamily II DN 100.0 1.1E-61 2.3E-66 549.4 40.5 362 279-655 29-392 (513)
9 KOG0340 ATP-dependent RNA heli 100.0 8.7E-61 1.9E-65 482.8 30.0 366 277-655 5-372 (442)
10 PTZ00110 helicase; Provisional 100.0 2.2E-57 4.7E-62 519.0 49.2 368 276-654 127-494 (545)
11 KOG0333 U5 snRNP-like RNA heli 100.0 1.6E-58 3.5E-63 486.1 32.2 365 276-652 242-632 (673)
12 PRK11634 ATP-dependent RNA hel 100.0 8.4E-57 1.8E-61 518.5 46.5 358 279-655 6-363 (629)
13 KOG0328 Predicted ATP-dependen 100.0 1.7E-58 3.6E-63 452.5 26.7 360 275-654 23-383 (400)
14 PRK04837 ATP-dependent RNA hel 100.0 4.5E-57 9.9E-62 505.1 41.1 368 276-656 5-374 (423)
15 PRK11776 ATP-dependent RNA hel 100.0 1.7E-56 3.6E-61 505.9 41.5 358 278-655 3-360 (460)
16 PRK10590 ATP-dependent RNA hel 100.0 4.5E-56 9.7E-61 500.6 40.7 362 280-655 2-363 (456)
17 PRK04537 ATP-dependent RNA hel 100.0 6.4E-56 1.4E-60 508.5 41.3 365 279-655 9-375 (572)
18 KOG0326 ATP-dependent RNA heli 100.0 4.8E-58 1E-62 456.0 19.5 358 276-654 82-439 (459)
19 KOG0347 RNA helicase [RNA proc 100.0 1E-57 2.2E-62 482.0 22.3 369 276-653 178-579 (731)
20 KOG0335 ATP-dependent RNA heli 100.0 3.5E-56 7.6E-61 476.1 28.6 359 280-645 75-445 (482)
21 KOG0336 ATP-dependent RNA heli 100.0 3.1E-56 6.7E-61 455.3 26.1 361 277-650 217-578 (629)
22 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-54 2.9E-59 494.5 40.7 366 276-653 118-484 (518)
23 KOG0346 RNA helicase [RNA proc 100.0 4.4E-55 9.6E-60 451.6 28.7 366 278-653 18-419 (569)
24 PRK11192 ATP-dependent RNA hel 100.0 1.9E-53 4.2E-58 477.9 43.4 359 280-654 2-362 (434)
25 PRK01297 ATP-dependent RNA hel 100.0 2.7E-53 5.9E-58 481.1 42.5 366 278-655 86-453 (475)
26 KOG0341 DEAD-box protein abstr 100.0 2.4E-55 5.2E-60 446.0 15.4 368 274-653 165-538 (610)
27 KOG0339 ATP-dependent RNA heli 100.0 2.4E-53 5.2E-58 444.5 29.6 364 275-652 219-583 (731)
28 PTZ00424 helicase 45; Provisio 100.0 1.3E-50 2.7E-55 451.1 40.6 357 278-654 27-384 (401)
29 KOG0332 ATP-dependent RNA heli 100.0 1.8E-51 4E-56 417.4 27.5 364 270-655 81-455 (477)
30 KOG0334 RNA helicase [RNA proc 100.0 8E-51 1.7E-55 462.1 30.4 377 276-663 362-740 (997)
31 KOG0350 DEAD-box ATP-dependent 100.0 4.8E-50 1E-54 420.4 30.6 354 288-655 146-552 (620)
32 TIGR03817 DECH_helic helicase/ 100.0 4.7E-48 1E-52 454.2 41.9 348 285-654 20-398 (742)
33 KOG0327 Translation initiation 100.0 6.6E-49 1.4E-53 403.1 25.3 356 279-655 26-381 (397)
34 KOG0337 ATP-dependent RNA heli 100.0 2E-49 4.3E-54 408.2 19.7 360 278-655 20-379 (529)
35 PLN03137 ATP-dependent DNA hel 100.0 4.6E-47 1E-51 441.9 37.7 343 283-652 441-795 (1195)
36 KOG4284 DEAD box protein [Tran 100.0 1.3E-48 2.8E-53 418.5 22.3 356 275-646 21-381 (980)
37 TIGR00614 recQ_fam ATP-depende 100.0 7.1E-46 1.5E-50 419.1 37.0 330 296-653 6-342 (470)
38 PRK11057 ATP-dependent DNA hel 100.0 3E-44 6.4E-49 416.3 38.9 334 287-653 10-352 (607)
39 KOG0344 ATP-dependent RNA heli 100.0 2.5E-45 5.5E-50 394.4 25.6 365 278-654 131-505 (593)
40 TIGR01389 recQ ATP-dependent D 100.0 6.6E-43 1.4E-47 406.1 37.4 324 297-653 9-340 (591)
41 PRK13767 ATP-dependent helicas 100.0 9.4E-42 2E-46 408.6 41.1 348 286-643 18-397 (876)
42 PRK02362 ski2-like helicase; P 100.0 8.7E-42 1.9E-46 405.3 33.1 339 280-645 2-398 (737)
43 KOG0329 ATP-dependent RNA heli 100.0 3.2E-43 7E-48 340.3 16.2 323 279-654 42-366 (387)
44 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.9E-41 4E-46 398.0 34.1 326 304-662 5-354 (819)
45 PRK00254 ski2-like helicase; P 100.0 2.2E-40 4.7E-45 392.3 36.7 348 280-652 2-397 (720)
46 PRK11664 ATP-dependent RNA hel 100.0 1.4E-40 2.9E-45 391.7 31.7 325 304-661 8-356 (812)
47 KOG0926 DEAH-box RNA helicase 100.0 2.5E-41 5.5E-46 369.6 19.8 336 304-663 259-724 (1172)
48 COG0514 RecQ Superfamily II DN 100.0 6E-40 1.3E-44 363.9 30.8 325 297-652 13-345 (590)
49 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.6E-39 3.4E-44 374.8 33.9 318 297-641 12-388 (844)
50 PHA02653 RNA helicase NPH-II; 100.0 4.4E-39 9.6E-44 369.7 36.1 320 304-652 167-522 (675)
51 TIGR00580 mfd transcription-re 100.0 9.3E-39 2E-43 378.8 37.8 322 285-643 435-769 (926)
52 COG1201 Lhr Lhr-like helicases 100.0 1.8E-38 4E-43 364.0 38.0 340 286-643 8-361 (814)
53 PRK01172 ski2-like helicase; P 100.0 1.3E-38 2.8E-43 375.6 35.7 336 280-644 2-378 (674)
54 PRK10917 ATP-dependent DNA hel 100.0 2E-37 4.3E-42 363.1 37.7 318 289-642 249-587 (681)
55 PRK10689 transcription-repair 100.0 1.3E-37 2.9E-42 376.5 37.0 319 288-643 588-918 (1147)
56 TIGR00643 recG ATP-dependent D 100.0 2.1E-37 4.5E-42 360.7 36.3 318 289-641 224-563 (630)
57 PRK09751 putative ATP-dependen 100.0 7.1E-37 1.5E-41 371.4 37.0 309 321-639 1-380 (1490)
58 PRK11131 ATP-dependent RNA hel 100.0 1.4E-36 3E-41 362.8 32.0 323 303-662 76-429 (1294)
59 KOG0352 ATP-dependent DNA heli 100.0 3.8E-36 8.2E-41 309.8 27.2 337 289-652 6-370 (641)
60 PRK09401 reverse gyrase; Revie 100.0 8.9E-36 1.9E-40 361.4 32.9 298 297-630 77-430 (1176)
61 PRK14701 reverse gyrase; Provi 100.0 5.1E-36 1.1E-40 370.3 31.3 326 290-650 68-462 (1638)
62 PRK12898 secA preprotein trans 100.0 1.6E-34 3.4E-39 326.9 36.4 322 300-647 102-589 (656)
63 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.4E-35 7.3E-40 352.3 31.5 320 306-660 72-420 (1283)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.3E-34 4.9E-39 315.6 28.8 302 318-643 1-335 (358)
65 COG1111 MPH1 ERCC4-like helica 100.0 2.7E-33 5.9E-38 297.4 34.2 328 299-644 13-481 (542)
66 PHA02558 uvsW UvsW helicase; P 100.0 4.2E-34 9E-39 325.0 30.1 310 300-641 113-449 (501)
67 PRK09200 preprotein translocas 100.0 3E-33 6.4E-38 323.0 36.3 325 297-647 75-544 (790)
68 KOG0922 DEAH-box RNA helicase 100.0 3.4E-34 7.5E-39 313.3 26.9 323 302-659 52-405 (674)
69 KOG0351 ATP-dependent DNA heli 100.0 2.2E-34 4.8E-39 336.8 24.9 332 294-652 257-600 (941)
70 TIGR03714 secA2 accessory Sec 100.0 1.1E-32 2.4E-37 315.3 37.2 322 301-647 70-540 (762)
71 KOG0923 mRNA splicing factor A 100.0 3.7E-34 8E-39 308.9 22.4 334 298-663 262-626 (902)
72 COG1643 HrpA HrpA-like helicas 100.0 1.3E-33 2.8E-38 326.7 28.1 327 302-662 51-405 (845)
73 KOG0349 Putative DEAD-box RNA 100.0 1.7E-34 3.8E-39 297.5 17.5 282 355-643 286-614 (725)
74 TIGR01054 rgy reverse gyrase. 100.0 8.6E-33 1.9E-37 335.9 32.6 292 290-616 67-409 (1171)
75 TIGR00963 secA preprotein tran 100.0 3.1E-32 6.7E-37 309.6 34.9 322 301-648 56-521 (745)
76 PRK13766 Hef nuclease; Provisi 100.0 6.6E-32 1.4E-36 324.3 38.8 327 299-643 13-478 (773)
77 COG1202 Superfamily II helicas 100.0 8.9E-33 1.9E-37 294.3 26.8 342 278-643 193-552 (830)
78 TIGR03158 cas3_cyano CRISPR-as 100.0 3.6E-32 7.7E-37 296.2 31.2 299 305-629 1-357 (357)
79 COG1205 Distinct helicase fami 100.0 3.7E-32 8.1E-37 320.8 33.5 348 287-651 56-431 (851)
80 COG1204 Superfamily II helicas 100.0 2.8E-32 6.1E-37 317.5 30.1 334 285-641 15-405 (766)
81 KOG0354 DEAD-box like helicase 100.0 3E-31 6.5E-36 297.5 28.7 331 299-647 60-532 (746)
82 KOG0353 ATP-dependent DNA heli 100.0 8.6E-32 1.9E-36 273.5 21.0 346 280-649 72-472 (695)
83 KOG0924 mRNA splicing factor A 100.0 9.2E-31 2E-35 282.8 22.0 309 299-643 354-696 (1042)
84 KOG0920 ATP-dependent RNA heli 100.0 2.7E-30 5.9E-35 297.5 25.8 342 301-666 173-567 (924)
85 TIGR00603 rad25 DNA repair hel 100.0 7.5E-30 1.6E-34 292.2 26.7 311 300-645 254-608 (732)
86 KOG0952 DNA/RNA helicase MER3/ 100.0 6.7E-29 1.5E-33 280.7 29.6 335 296-645 105-492 (1230)
87 KOG2340 Uncharacterized conser 100.0 1.4E-29 3E-34 268.0 20.5 355 297-652 212-676 (698)
88 PRK05580 primosome assembly pr 100.0 1.5E-27 3.2E-32 278.8 36.8 311 301-642 144-547 (679)
89 PRK13104 secA preprotein trans 100.0 5.8E-27 1.3E-31 270.1 33.0 325 301-646 82-589 (896)
90 PRK04914 ATP-dependent helicas 100.0 1.4E-26 3.1E-31 274.1 35.3 321 301-643 152-602 (956)
91 KOG0948 Nuclear exosomal RNA h 100.0 3E-28 6.4E-33 266.3 18.3 315 301-643 129-538 (1041)
92 KOG0947 Cytoplasmic exosomal R 100.0 6.6E-27 1.4E-31 261.6 27.4 318 296-643 293-722 (1248)
93 PF06862 DUF1253: Protein of u 100.0 6E-27 1.3E-31 253.7 26.2 308 345-653 27-424 (442)
94 PRK09694 helicase Cas3; Provis 100.0 2E-26 4.4E-31 271.2 32.5 320 299-633 284-664 (878)
95 cd00268 DEADc DEAD-box helicas 100.0 1.1E-26 2.4E-31 233.8 25.0 199 281-490 1-199 (203)
96 PRK12899 secA preprotein trans 100.0 8.6E-26 1.9E-30 259.7 33.5 150 282-447 65-228 (970)
97 PRK12904 preprotein translocas 100.0 2.3E-25 5E-30 256.8 37.0 320 301-646 81-575 (830)
98 PRK12906 secA preprotein trans 99.9 1.7E-25 3.6E-30 257.0 34.3 322 300-647 79-556 (796)
99 KOG0951 RNA helicase BRR2, DEA 99.9 1.7E-26 3.6E-31 264.0 24.0 347 285-645 295-703 (1674)
100 COG1061 SSL2 DNA or RNA helica 99.9 3.8E-26 8.3E-31 255.0 25.9 303 300-639 35-385 (442)
101 TIGR00595 priA primosomal prot 99.9 1.6E-25 3.4E-30 253.0 30.6 291 320-641 1-378 (505)
102 COG1200 RecG RecG-like helicas 99.9 5.4E-25 1.2E-29 244.0 32.1 325 285-645 246-592 (677)
103 COG4098 comFA Superfamily II D 99.9 9E-25 2E-29 221.3 29.4 327 301-692 97-439 (441)
104 COG4581 Superfamily II RNA hel 99.9 1.1E-25 2.4E-30 262.1 25.9 319 295-643 114-536 (1041)
105 KOG0925 mRNA splicing factor A 99.9 1.2E-25 2.6E-30 235.9 23.1 329 278-643 24-386 (699)
106 PRK13107 preprotein translocas 99.9 3.4E-24 7.4E-29 246.4 31.3 320 301-646 82-593 (908)
107 PRK11448 hsdR type I restricti 99.9 2.3E-23 5E-28 252.1 30.0 325 301-642 413-813 (1123)
108 COG1197 Mfd Transcription-repa 99.9 2.2E-22 4.7E-27 234.8 32.4 320 287-643 580-912 (1139)
109 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-23 4.1E-28 203.6 19.1 166 303-481 1-168 (169)
110 PLN03142 Probable chromatin-re 99.9 1.9E-22 4.1E-27 239.8 31.3 321 301-643 169-598 (1033)
111 KOG0950 DNA polymerase theta/e 99.9 1.3E-22 2.9E-27 229.5 22.2 341 289-648 211-615 (1008)
112 PRK12900 secA preprotein trans 99.9 6.7E-21 1.4E-25 220.1 29.8 126 518-647 581-714 (1025)
113 COG1203 CRISPR-associated heli 99.9 9.7E-21 2.1E-25 223.7 25.8 329 302-643 196-549 (733)
114 COG1110 Reverse gyrase [DNA re 99.9 3.6E-19 7.8E-24 202.6 32.6 281 298-615 80-416 (1187)
115 KOG0385 Chromatin remodeling c 99.9 1.8E-19 3.9E-24 198.9 26.8 322 300-643 166-598 (971)
116 TIGR01407 dinG_rel DnaQ family 99.8 6.6E-19 1.4E-23 212.3 33.9 338 286-642 231-812 (850)
117 TIGR00631 uvrb excinuclease AB 99.8 7.8E-19 1.7E-23 203.3 32.2 134 517-653 424-562 (655)
118 PRK12326 preprotein translocas 99.8 4.6E-18 9.9E-23 191.9 36.2 321 300-648 77-551 (764)
119 PRK05298 excinuclease ABC subu 99.8 9E-18 1.9E-22 195.9 34.4 124 517-643 428-556 (652)
120 KOG0387 Transcription-coupled 99.8 7.7E-18 1.7E-22 187.1 27.5 330 301-652 205-669 (923)
121 PRK13103 secA preprotein trans 99.8 2E-17 4.2E-22 191.2 29.7 320 300-646 81-593 (913)
122 KOG0949 Predicted helicase, DE 99.8 1.6E-18 3.5E-23 195.2 18.8 162 301-476 511-672 (1330)
123 PRK12903 secA preprotein trans 99.8 1.8E-16 3.9E-21 181.3 32.0 319 301-646 78-541 (925)
124 TIGR00348 hsdR type I site-spe 99.8 3.9E-17 8.5E-22 191.3 27.5 307 302-631 239-634 (667)
125 KOG0384 Chromodomain-helicase 99.8 3.1E-18 6.7E-23 197.6 17.1 332 300-654 369-823 (1373)
126 COG1198 PriA Primosomal protei 99.8 8.6E-17 1.9E-21 184.8 28.5 313 300-643 197-602 (730)
127 COG4096 HsdR Type I site-speci 99.8 7.5E-18 1.6E-22 189.6 18.8 304 300-631 164-525 (875)
128 KOG1123 RNA polymerase II tran 99.8 1.9E-18 4.1E-23 182.5 11.3 322 275-632 278-635 (776)
129 PRK07246 bifunctional ATP-depe 99.8 2.4E-16 5.3E-21 187.7 30.2 313 301-642 245-781 (820)
130 smart00487 DEXDc DEAD-like hel 99.8 5.6E-17 1.2E-21 161.0 20.7 179 297-488 4-183 (201)
131 CHL00122 secA preprotein trans 99.7 2.6E-15 5.7E-20 173.0 34.0 132 297-447 73-209 (870)
132 KOG4150 Predicted ATP-dependen 99.7 4.1E-17 8.8E-22 174.4 17.1 344 293-653 278-651 (1034)
133 PRK12902 secA preprotein trans 99.7 6.5E-15 1.4E-19 169.3 32.9 129 301-447 85-218 (939)
134 cd00079 HELICc Helicase superf 99.7 2.1E-16 4.5E-21 146.7 13.2 120 519-640 12-131 (131)
135 KOG0390 DNA repair protein, SN 99.7 8.5E-15 1.8E-19 167.4 28.4 342 301-657 238-723 (776)
136 KOG0389 SNF2 family DNA-depend 99.7 2.8E-15 6.1E-20 166.8 22.7 321 302-644 400-888 (941)
137 PRK08074 bifunctional ATP-depe 99.7 3E-14 6.5E-19 172.9 32.1 119 523-642 739-891 (928)
138 KOG0953 Mitochondrial RNA heli 99.7 1.2E-15 2.6E-20 163.9 17.2 279 315-652 190-484 (700)
139 KOG0392 SNF2 family DNA-depend 99.7 4.6E-15 1E-19 171.0 22.4 327 302-643 976-1453(1549)
140 COG0556 UvrB Helicase subunit 99.7 7.4E-15 1.6E-19 157.6 21.8 125 516-643 427-556 (663)
141 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.1E-13 2.5E-18 158.2 31.8 90 524-616 458-561 (636)
142 PF00271 Helicase_C: Helicase 99.6 5E-16 1.1E-20 131.0 7.9 78 555-632 1-78 (78)
143 KOG0921 Dosage compensation co 99.6 5.5E-15 1.2E-19 165.6 17.1 326 304-650 381-780 (1282)
144 PRK12901 secA preprotein trans 99.6 5E-13 1.1E-17 155.4 29.0 124 519-646 612-743 (1112)
145 KOG1000 Chromatin remodeling p 99.6 2.2E-13 4.8E-18 144.6 23.2 317 301-642 198-599 (689)
146 KOG0386 Chromatin remodeling c 99.6 3.2E-14 7E-19 162.0 17.2 322 299-643 392-835 (1157)
147 cd00046 DEXDc DEAD-like helica 99.6 1.3E-13 2.9E-18 128.5 17.2 144 317-475 1-144 (144)
148 COG1199 DinG Rad3-related DNA 99.6 1.3E-12 2.9E-17 154.6 29.1 115 523-641 466-614 (654)
149 PRK11747 dinG ATP-dependent DN 99.5 9.3E-12 2E-16 146.8 32.2 115 522-642 521-672 (697)
150 KOG0951 RNA helicase BRR2, DEA 99.5 4.5E-13 9.7E-18 155.2 19.9 317 301-652 1143-1502(1674)
151 COG4889 Predicted helicase [Ge 99.5 6.2E-14 1.4E-18 156.6 12.6 324 298-641 158-583 (1518)
152 KOG1002 Nucleotide excision re 99.5 3.7E-12 8.1E-17 135.1 24.9 108 535-642 636-747 (791)
153 PF04851 ResIII: Type III rest 99.5 1.2E-13 2.7E-18 135.9 12.1 157 301-476 3-183 (184)
154 TIGR00604 rad3 DNA repair heli 99.5 1.1E-11 2.5E-16 147.1 29.2 94 522-616 508-615 (705)
155 KOG0391 SNF2 family DNA-depend 99.5 1.3E-11 2.8E-16 141.6 26.2 121 522-644 1263-1387(1958)
156 TIGR02562 cas3_yersinia CRISPR 99.5 5.7E-12 1.2E-16 147.5 23.4 317 301-633 408-881 (1110)
157 smart00490 HELICc helicase sup 99.5 1.7E-13 3.6E-18 116.0 8.1 81 552-632 2-82 (82)
158 KOG0388 SNF2 family DNA-depend 99.4 6.9E-12 1.5E-16 137.8 19.9 106 537-642 1044-1152(1185)
159 PF02399 Herpes_ori_bp: Origin 99.3 3E-10 6.6E-15 130.1 22.7 294 316-644 49-388 (824)
160 PRK14873 primosome assembly pr 99.2 1.4E-09 3E-14 126.4 24.3 133 325-482 169-310 (665)
161 KOG4439 RNA polymerase II tran 99.2 9.2E-10 2E-14 121.9 18.6 119 520-639 730-851 (901)
162 COG0653 SecA Preprotein transl 99.2 1.1E-09 2.3E-14 126.5 18.8 322 304-645 81-546 (822)
163 COG0553 HepA Superfamily II DN 99.1 6.5E-09 1.4E-13 127.5 22.3 122 519-640 692-816 (866)
164 PF07652 Flavi_DEAD: Flaviviru 99.1 1.1E-09 2.3E-14 100.9 11.3 136 315-479 3-140 (148)
165 PF00176 SNF2_N: SNF2 family N 98.9 7.8E-09 1.7E-13 110.2 13.3 159 305-475 1-172 (299)
166 COG0610 Type I site-specific r 98.9 3.8E-07 8.2E-12 110.9 29.0 314 317-654 274-662 (962)
167 smart00488 DEXDc2 DEAD-like he 98.9 2.1E-08 4.5E-13 106.2 14.5 75 298-378 6-84 (289)
168 smart00489 DEXDc3 DEAD-like he 98.9 2.1E-08 4.5E-13 106.2 14.5 75 298-378 6-84 (289)
169 KOG1015 Transcription regulato 98.9 2.2E-07 4.8E-12 105.9 21.8 118 521-640 1128-1271(1567)
170 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.4E-07 3.1E-12 97.5 15.7 132 299-447 75-210 (266)
171 KOG1016 Predicted DNA helicase 98.5 8.3E-06 1.8E-10 91.6 19.6 130 538-667 720-875 (1387)
172 PRK15483 type III restriction- 98.3 6E-06 1.3E-10 98.1 14.5 68 587-654 501-578 (986)
173 TIGR00596 rad1 DNA repair prot 98.3 9.7E-06 2.1E-10 96.3 15.8 64 408-474 8-71 (814)
174 COG3587 Restriction endonuclea 98.3 3.4E-05 7.5E-10 88.5 19.1 69 586-654 482-563 (985)
175 PF13307 Helicase_C_2: Helicas 98.1 1E-05 2.2E-10 78.6 8.5 103 536-641 8-146 (167)
176 PF13086 AAA_11: AAA domain; P 98.1 1.7E-05 3.6E-10 81.0 10.5 73 302-377 2-75 (236)
177 KOG0952 DNA/RNA helicase MER3/ 98.0 3.2E-06 7E-11 98.4 3.1 133 301-448 927-1060(1230)
178 PF02562 PhoH: PhoH-like prote 98.0 3.4E-05 7.4E-10 76.8 9.4 140 299-474 2-155 (205)
179 PF13604 AAA_30: AAA domain; P 97.9 6.3E-05 1.4E-09 75.1 10.2 126 301-474 1-130 (196)
180 PF13959 DUF4217: Domain of un 97.8 3.4E-05 7.4E-10 62.1 5.0 45 685-730 20-65 (65)
181 PF12340 DUF3638: Protein of u 97.8 0.00018 4E-09 72.3 10.7 154 281-448 5-186 (229)
182 PRK10536 hypothetical protein; 97.7 0.00056 1.2E-08 70.1 13.1 144 297-472 55-210 (262)
183 KOG1803 DNA helicase [Replicat 97.6 0.00024 5.2E-09 79.2 10.0 66 300-376 184-250 (649)
184 PRK10875 recD exonuclease V su 97.6 0.00041 9E-09 80.6 12.3 145 303-474 154-301 (615)
185 PF13872 AAA_34: P-loop contai 97.6 0.00081 1.7E-08 70.2 12.9 164 301-482 37-227 (303)
186 TIGR01448 recD_rel helicase, p 97.6 0.00076 1.7E-08 80.4 14.2 131 300-474 322-452 (720)
187 TIGR01447 recD exodeoxyribonuc 97.6 0.0008 1.7E-08 78.0 13.7 145 304-474 148-295 (586)
188 KOG1802 RNA helicase nonsense 97.5 0.00064 1.4E-08 76.2 10.4 74 295-378 404-477 (935)
189 PF09848 DUF2075: Uncharacteri 97.3 0.00085 1.8E-08 73.5 10.0 108 318-461 3-117 (352)
190 PF13245 AAA_19: Part of AAA d 97.3 0.0011 2.4E-08 55.2 7.5 53 316-375 10-62 (76)
191 KOG1132 Helicase of the DEAD s 97.2 0.0012 2.6E-08 76.6 9.7 80 536-616 560-656 (945)
192 COG1875 NYN ribonuclease and A 97.1 0.003 6.4E-08 66.9 10.3 153 296-472 223-385 (436)
193 PF00580 UvrD-helicase: UvrD/R 96.9 0.0024 5.1E-08 68.3 8.3 125 302-444 1-125 (315)
194 PF05970 PIF1: PIF1-like helic 96.9 0.003 6.4E-08 69.5 8.5 59 302-371 2-66 (364)
195 PF13401 AAA_22: AAA domain; P 96.9 0.0038 8.2E-08 57.5 7.9 19 315-333 3-21 (131)
196 PRK12723 flagellar biosynthesi 96.9 0.023 5E-07 62.5 15.1 55 432-486 252-309 (388)
197 PRK08181 transposase; Validate 96.8 0.015 3.3E-07 60.8 12.8 23 312-334 102-124 (269)
198 smart00492 HELICc3 helicase su 96.8 0.0085 1.8E-07 56.4 9.5 53 564-616 24-79 (141)
199 PRK14974 cell division protein 96.8 0.021 4.5E-07 61.7 13.7 54 433-486 221-275 (336)
200 PF00448 SRP54: SRP54-type pro 96.8 0.019 4.2E-07 57.2 12.5 54 433-486 82-136 (196)
201 TIGR02768 TraA_Ti Ti-type conj 96.7 0.013 2.8E-07 70.3 12.5 62 300-372 351-413 (744)
202 smart00491 HELICc2 helicase su 96.7 0.0084 1.8E-07 56.5 8.6 66 551-616 5-80 (142)
203 PRK14722 flhF flagellar biosyn 96.6 0.024 5.1E-07 62.0 13.1 132 315-487 136-270 (374)
204 PRK11889 flhF flagellar biosyn 96.5 0.04 8.7E-07 60.1 13.8 129 317-487 242-375 (436)
205 COG3421 Uncharacterized protei 96.5 0.0024 5.1E-08 71.1 4.4 146 321-477 2-167 (812)
206 KOG1805 DNA replication helica 96.5 0.013 2.8E-07 68.9 10.5 126 299-448 667-810 (1100)
207 PRK13889 conjugal transfer rel 96.5 0.026 5.6E-07 69.0 13.4 62 300-372 345-407 (988)
208 PRK06526 transposase; Provisio 96.5 0.011 2.4E-07 61.5 8.8 25 311-335 93-117 (254)
209 cd00009 AAA The AAA+ (ATPases 96.5 0.047 1E-06 50.4 12.5 23 310-332 11-35 (151)
210 PRK04296 thymidine kinase; Pro 96.4 0.0073 1.6E-07 60.0 7.0 36 317-363 3-38 (190)
211 PRK05703 flhF flagellar biosyn 96.4 0.11 2.3E-06 58.3 16.5 67 413-486 285-354 (424)
212 TIGR02760 TraI_TIGR conjugativ 96.3 0.29 6.4E-06 64.7 22.1 135 301-474 429-566 (1960)
213 KOG1131 RNA polymerase II tran 96.3 0.057 1.2E-06 59.5 12.9 105 537-642 530-678 (755)
214 TIGR00376 DNA helicase, putati 96.3 0.016 3.5E-07 68.2 9.6 67 300-377 156-223 (637)
215 PRK06921 hypothetical protein; 96.2 0.067 1.4E-06 56.1 13.2 28 315-343 116-143 (266)
216 PRK07952 DNA replication prote 96.2 0.07 1.5E-06 55.0 12.8 49 432-480 160-210 (244)
217 PF14617 CMS1: U3-containing 9 96.1 0.012 2.6E-07 60.5 6.6 86 355-445 126-212 (252)
218 TIGR01075 uvrD DNA helicase II 96.0 0.017 3.7E-07 69.5 8.5 71 300-379 3-73 (715)
219 PRK13826 Dtr system oriT relax 96.0 0.13 2.8E-06 63.5 15.7 76 285-372 366-442 (1102)
220 smart00382 AAA ATPases associa 96.0 0.028 6.1E-07 51.4 8.1 17 316-332 2-18 (148)
221 PF03354 Terminase_1: Phage Te 95.9 0.026 5.6E-07 64.5 9.1 151 304-472 1-160 (477)
222 PRK08727 hypothetical protein; 95.9 0.049 1.1E-06 56.0 10.1 45 433-477 92-137 (233)
223 PRK08116 hypothetical protein; 95.8 0.12 2.6E-06 54.3 12.7 27 317-344 115-141 (268)
224 PRK12377 putative replication 95.7 0.091 2E-06 54.3 11.2 27 316-343 101-127 (248)
225 PF13871 Helicase_C_4: Helicas 95.7 0.036 7.7E-07 57.8 8.1 75 578-652 52-138 (278)
226 COG1419 FlhF Flagellar GTP-bin 95.7 0.22 4.7E-06 54.4 14.3 131 315-486 202-335 (407)
227 PRK06731 flhF flagellar biosyn 95.6 0.24 5.2E-06 51.9 14.0 131 315-487 74-209 (270)
228 PHA02533 17 large terminase pr 95.5 0.07 1.5E-06 61.4 10.5 149 301-475 59-210 (534)
229 PRK06893 DNA replication initi 95.5 0.063 1.4E-06 55.0 9.0 46 433-478 90-137 (229)
230 PRK05642 DNA replication initi 95.4 0.091 2E-06 54.0 10.0 46 433-478 96-142 (234)
231 PRK07764 DNA polymerase III su 95.4 0.099 2.2E-06 63.1 11.6 43 433-477 119-161 (824)
232 cd01124 KaiC KaiC is a circadi 95.3 0.18 4E-06 49.4 11.5 48 319-378 2-49 (187)
233 cd01120 RecA-like_NTPases RecA 95.3 0.13 2.8E-06 48.7 10.0 45 433-477 84-138 (165)
234 PRK11054 helD DNA helicase IV; 95.3 0.07 1.5E-06 63.3 9.6 74 297-379 192-265 (684)
235 PRK13709 conjugal transfer nic 95.2 0.99 2.1E-05 58.6 20.1 66 300-372 966-1033(1747)
236 KOG1133 Helicase of the DEAD s 95.2 0.2 4.4E-06 57.3 12.4 119 521-642 614-778 (821)
237 COG1484 DnaC DNA replication p 95.2 0.15 3.2E-06 53.1 10.8 51 313-375 102-152 (254)
238 COG1444 Predicted P-loop ATPas 95.2 0.31 6.7E-06 57.4 14.3 149 294-476 207-357 (758)
239 PRK06835 DNA replication prote 95.1 0.28 6E-06 53.0 12.9 28 315-343 182-209 (329)
240 PRK08084 DNA replication initi 95.1 0.15 3.3E-06 52.4 10.3 45 434-478 97-143 (235)
241 PRK11773 uvrD DNA-dependent he 95.0 0.089 1.9E-06 63.3 9.7 72 300-380 8-79 (721)
242 PF05876 Terminase_GpA: Phage 95.0 0.04 8.7E-07 63.9 6.5 126 301-447 16-147 (557)
243 PRK12726 flagellar biosynthesi 95.0 0.3 6.5E-06 53.2 12.5 128 316-484 206-337 (407)
244 PRK00149 dnaA chromosomal repl 95.0 0.14 2.9E-06 58.2 10.6 44 433-477 210-255 (450)
245 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.14 3E-06 52.0 9.8 43 435-477 91-134 (226)
246 PF05127 Helicase_RecD: Helica 94.9 0.012 2.6E-07 57.3 1.5 124 320-476 1-124 (177)
247 PRK10919 ATP-dependent DNA hel 94.8 0.066 1.4E-06 63.8 7.8 71 301-380 2-72 (672)
248 PRK14087 dnaA chromosomal repl 94.7 0.26 5.6E-06 55.7 11.9 47 432-478 204-251 (450)
249 KOG1001 Helicase-like transcri 94.7 0.12 2.6E-06 60.7 9.5 101 539-639 541-643 (674)
250 PRK12724 flagellar biosynthesi 94.6 0.51 1.1E-05 52.2 13.4 53 434-486 299-356 (432)
251 TIGR00362 DnaA chromosomal rep 94.5 0.21 4.5E-06 55.9 10.4 44 434-478 199-244 (405)
252 KOG0989 Replication factor C, 94.3 0.076 1.6E-06 55.3 5.8 45 432-477 127-171 (346)
253 TIGR01074 rep ATP-dependent DN 94.3 0.15 3.2E-06 61.0 9.4 70 302-380 2-71 (664)
254 PRK14712 conjugal transfer nic 94.3 0.24 5.2E-06 63.2 11.3 63 301-372 835-901 (1623)
255 PF05621 TniB: Bacterial TniB 94.3 0.25 5.3E-06 52.1 9.7 56 317-377 62-118 (302)
256 PRK14721 flhF flagellar biosyn 94.3 0.63 1.4E-05 51.8 13.4 131 315-486 190-323 (420)
257 PHA03333 putative ATPase subun 94.3 0.84 1.8E-05 53.1 14.5 139 314-476 185-333 (752)
258 PRK00771 signal recognition pa 94.3 0.76 1.6E-05 51.6 14.1 52 434-485 175-227 (437)
259 PRK07003 DNA polymerase III su 94.2 0.48 1E-05 55.9 12.7 40 433-474 118-157 (830)
260 PRK12727 flagellar biosynthesi 94.2 0.5 1.1E-05 53.7 12.5 54 432-486 426-481 (559)
261 PRK12323 DNA polymerase III su 94.2 0.29 6.3E-06 56.8 10.7 39 433-472 123-161 (700)
262 PRK09183 transposase/IS protei 94.2 0.39 8.5E-06 50.1 11.0 23 313-335 99-121 (259)
263 PRK14086 dnaA chromosomal repl 94.2 0.28 6.1E-06 56.8 10.6 49 432-480 375-425 (617)
264 KOG0298 DEAD box-containing he 94.2 0.11 2.5E-06 63.0 7.6 163 315-486 373-561 (1394)
265 PRK12422 chromosomal replicati 94.1 0.17 3.8E-06 57.0 8.8 50 433-482 201-252 (445)
266 PRK14723 flhF flagellar biosyn 94.1 0.57 1.2E-05 55.7 13.1 67 413-486 249-317 (767)
267 PRK14964 DNA polymerase III su 94.1 0.56 1.2E-05 53.3 12.6 45 432-478 114-158 (491)
268 TIGR01073 pcrA ATP-dependent D 94.0 0.21 4.6E-06 60.2 9.9 72 300-380 3-74 (726)
269 PRK14952 DNA polymerase III su 94.0 0.26 5.7E-06 57.2 10.0 44 432-477 116-159 (584)
270 PRK12402 replication factor C 94.0 0.42 9.2E-06 51.7 11.2 40 433-474 124-163 (337)
271 PRK05707 DNA polymerase III su 93.9 0.14 2.9E-06 55.5 7.1 34 301-334 3-40 (328)
272 PRK08939 primosomal protein Dn 93.9 0.79 1.7E-05 49.0 12.8 26 316-342 156-181 (306)
273 PRK07994 DNA polymerase III su 93.8 0.76 1.7E-05 53.9 13.5 38 433-471 118-155 (647)
274 PF00308 Bac_DnaA: Bacterial d 93.8 0.26 5.6E-06 50.1 8.6 49 432-480 95-145 (219)
275 PRK13833 conjugal transfer pro 93.7 0.23 5E-06 53.4 8.4 58 302-368 129-187 (323)
276 PRK09111 DNA polymerase III su 93.7 0.65 1.4E-05 54.3 12.7 40 432-472 130-169 (598)
277 PRK14088 dnaA chromosomal repl 93.7 0.44 9.6E-06 53.8 11.0 49 434-482 194-244 (440)
278 PHA02544 44 clamp loader, smal 93.7 0.8 1.7E-05 49.2 12.7 40 434-474 100-139 (316)
279 PRK08903 DnaA regulatory inact 93.7 0.44 9.5E-06 48.5 10.1 43 434-477 90-133 (227)
280 TIGR00064 ftsY signal recognit 93.7 1.4 3E-05 46.3 14.0 54 433-486 153-213 (272)
281 PHA03368 DNA packaging termina 93.6 0.81 1.8E-05 53.0 12.7 138 314-477 252-392 (738)
282 PRK07471 DNA polymerase III su 93.6 0.6 1.3E-05 51.3 11.5 42 432-474 139-180 (365)
283 COG4962 CpaF Flp pilus assembl 93.5 0.12 2.6E-06 55.0 5.6 62 297-370 153-215 (355)
284 PRK05580 primosome assembly pr 93.4 0.39 8.5E-06 57.3 10.3 91 520-613 175-266 (679)
285 PRK08769 DNA polymerase III su 93.3 0.98 2.1E-05 48.5 12.3 42 432-474 111-152 (319)
286 TIGR03499 FlhF flagellar biosy 93.2 0.48 1E-05 50.2 9.7 20 316-335 194-213 (282)
287 TIGR01547 phage_term_2 phage t 93.1 0.52 1.1E-05 52.5 10.4 136 318-477 3-142 (396)
288 PRK09112 DNA polymerase III su 93.1 0.56 1.2E-05 51.2 10.3 39 433-472 140-178 (351)
289 PRK10867 signal recognition pa 93.1 1.5 3.3E-05 49.1 13.9 55 433-487 182-237 (433)
290 PRK08691 DNA polymerase III su 93.1 0.41 8.9E-06 56.1 9.6 40 432-472 117-156 (709)
291 TIGR02760 TraI_TIGR conjugativ 93.1 0.36 7.8E-06 63.9 10.2 63 300-372 1018-1085(1960)
292 PRK14951 DNA polymerase III su 93.0 0.88 1.9E-05 53.2 12.2 41 433-475 123-163 (618)
293 TIGR02785 addA_Gpos recombinat 93.0 0.27 5.9E-06 62.6 8.7 69 301-379 1-69 (1232)
294 TIGR03015 pepcterm_ATPase puta 92.9 0.68 1.5E-05 48.3 10.4 31 302-332 24-59 (269)
295 COG1435 Tdk Thymidine kinase [ 92.9 0.83 1.8E-05 44.9 9.9 104 317-461 5-108 (201)
296 PF06745 KaiC: KaiC; InterPro 92.7 0.63 1.4E-05 47.4 9.4 127 315-475 18-160 (226)
297 PRK14958 DNA polymerase III su 92.7 0.62 1.3E-05 53.5 10.3 39 433-472 118-156 (509)
298 PTZ00112 origin recognition co 92.6 1 2.2E-05 53.9 11.9 22 319-341 784-805 (1164)
299 TIGR02881 spore_V_K stage V sp 92.6 0.5 1.1E-05 49.4 8.8 18 317-334 43-60 (261)
300 TIGR00595 priA primosomal prot 92.6 0.52 1.1E-05 54.1 9.5 91 520-613 10-101 (505)
301 PRK13894 conjugal transfer ATP 92.5 0.4 8.6E-06 51.6 8.0 66 291-367 124-190 (319)
302 PTZ00293 thymidine kinase; Pro 92.5 0.79 1.7E-05 46.0 9.5 38 316-364 4-41 (211)
303 TIGR01425 SRP54_euk signal rec 92.5 2.2 4.7E-05 47.7 13.8 53 434-486 182-235 (429)
304 PF13177 DNA_pol3_delta2: DNA 92.5 1 2.2E-05 43.4 10.0 42 433-475 101-142 (162)
305 PRK14965 DNA polymerase III su 92.5 2.4 5.1E-05 49.7 14.9 44 432-477 117-160 (576)
306 cd00561 CobA_CobO_BtuR ATP:cor 92.4 2.1 4.5E-05 41.1 11.8 52 432-483 93-146 (159)
307 PRK06645 DNA polymerase III su 92.3 0.72 1.6E-05 52.8 10.0 19 317-335 44-62 (507)
308 PLN03025 replication factor C 92.2 1.9 4.1E-05 46.5 12.9 40 434-475 99-138 (319)
309 PRK14873 primosome assembly pr 92.2 0.85 1.8E-05 54.0 10.8 93 518-613 171-265 (665)
310 PRK10917 ATP-dependent DNA hel 92.1 0.58 1.3E-05 55.9 9.6 75 537-611 310-389 (681)
311 PRK10416 signal recognition pa 92.1 2.3 5.1E-05 45.7 13.2 54 433-486 195-255 (318)
312 PF00004 AAA: ATPase family as 92.0 0.58 1.3E-05 42.6 7.5 14 319-332 1-14 (132)
313 TIGR02782 TrbB_P P-type conjug 92.0 0.46 9.9E-06 50.7 7.6 67 291-368 108-175 (299)
314 PRK14960 DNA polymerase III su 91.9 0.64 1.4E-05 54.2 9.0 41 433-475 117-157 (702)
315 TIGR00708 cobA cob(I)alamin ad 91.8 1.2 2.5E-05 43.4 9.4 52 433-484 96-149 (173)
316 PRK14956 DNA polymerase III su 91.7 0.52 1.1E-05 53.1 8.0 41 433-475 120-160 (484)
317 PRK14949 DNA polymerase III su 91.7 0.69 1.5E-05 55.7 9.2 44 433-478 118-161 (944)
318 cd01122 GP4d_helicase GP4d_hel 91.6 0.53 1.2E-05 49.3 7.7 28 313-340 27-54 (271)
319 PRK05986 cob(I)alamin adenolsy 91.6 0.81 1.7E-05 45.2 8.2 145 315-484 21-167 (191)
320 PF05496 RuvB_N: Holliday junc 91.6 0.29 6.3E-06 49.3 5.2 17 317-333 51-67 (233)
321 PRK14961 DNA polymerase III su 91.5 0.56 1.2E-05 51.6 8.0 38 433-471 118-155 (363)
322 PRK14963 DNA polymerase III su 91.5 1.1 2.5E-05 51.3 10.6 16 319-334 39-54 (504)
323 PRK14959 DNA polymerase III su 91.4 1.6 3.5E-05 50.9 11.7 45 433-479 118-162 (624)
324 PRK11823 DNA repair protein Ra 91.3 1 2.2E-05 51.0 9.8 52 315-378 79-130 (446)
325 KOG0060 Long-chain acyl-CoA tr 91.3 1 2.2E-05 51.1 9.5 62 412-481 570-631 (659)
326 KOG0991 Replication factor C, 91.3 0.49 1.1E-05 47.5 6.3 18 317-334 49-66 (333)
327 PF13173 AAA_14: AAA domain 91.2 2 4.4E-05 39.3 10.2 37 434-473 61-97 (128)
328 PRK08533 flagellar accessory p 91.1 2.4 5.2E-05 43.4 11.6 20 314-333 22-41 (230)
329 PRK06871 DNA polymerase III su 91.1 1.4 3E-05 47.5 10.2 43 432-476 105-147 (325)
330 PRK06995 flhF flagellar biosyn 91.1 4 8.7E-05 46.3 14.2 20 316-335 256-275 (484)
331 PRK14955 DNA polymerase III su 91.0 2.4 5.2E-05 47.2 12.5 41 432-474 125-165 (397)
332 PRK06964 DNA polymerase III su 91.0 1.6 3.5E-05 47.3 10.7 40 302-342 2-46 (342)
333 PRK05563 DNA polymerase III su 91.0 1.3 2.7E-05 51.7 10.5 44 432-477 117-160 (559)
334 PRK00411 cdc6 cell division co 91.0 1.1 2.4E-05 49.7 9.8 16 317-332 56-71 (394)
335 PRK14962 DNA polymerase III su 90.9 1.6 3.5E-05 49.7 11.0 17 319-335 39-55 (472)
336 COG1110 Reverse gyrase [DNA re 90.9 0.83 1.8E-05 54.8 8.7 63 536-598 124-192 (1187)
337 PRK06620 hypothetical protein; 90.7 0.56 1.2E-05 47.5 6.5 16 317-332 45-60 (214)
338 PRK04195 replication factor C 90.6 1.6 3.4E-05 50.0 10.8 17 316-332 39-55 (482)
339 PRK07993 DNA polymerase III su 90.6 0.33 7.1E-06 52.6 4.9 43 432-476 106-148 (334)
340 TIGR03877 thermo_KaiC_1 KaiC d 90.6 2.3 5.1E-05 43.6 11.1 52 315-378 20-71 (237)
341 PRK14969 DNA polymerase III su 90.4 1.9 4.2E-05 49.8 11.2 39 433-472 118-156 (527)
342 PRK13851 type IV secretion sys 90.4 0.41 8.9E-06 52.0 5.4 46 311-368 157-202 (344)
343 COG2804 PulE Type II secretory 90.3 0.61 1.3E-05 52.3 6.7 39 303-342 243-283 (500)
344 cd03115 SRP The signal recogni 90.3 8.6 0.00019 37.1 14.3 53 434-486 82-135 (173)
345 PRK14957 DNA polymerase III su 90.3 1.5 3.3E-05 50.5 10.2 39 433-472 118-156 (546)
346 CHL00181 cbbX CbbX; Provisiona 90.2 4.3 9.4E-05 43.0 12.9 20 316-335 59-78 (287)
347 KOG1001 Helicase-like transcri 90.1 0.087 1.9E-06 61.9 0.0 115 317-448 153-268 (674)
348 PF05729 NACHT: NACHT domain 90.1 2.5 5.5E-05 40.0 10.3 38 437-474 84-129 (166)
349 PF01695 IstB_IS21: IstB-like 90.0 0.52 1.1E-05 46.2 5.4 32 311-343 42-73 (178)
350 cd01121 Sms Sms (bacterial rad 90.0 1.8 4E-05 47.6 10.2 52 315-378 81-132 (372)
351 PRK06067 flagellar accessory p 90.0 1.4 3E-05 45.1 8.8 51 316-378 25-75 (234)
352 PRK06090 DNA polymerase III su 89.9 0.46 1E-05 51.0 5.3 43 432-476 106-148 (319)
353 PRK13341 recombination factor 89.9 1.9 4.2E-05 51.5 11.0 17 317-333 53-69 (725)
354 COG1474 CDC6 Cdc6-related prot 89.9 2.1 4.6E-05 46.9 10.5 31 311-342 35-67 (366)
355 COG1198 PriA Primosomal protei 89.8 1 2.2E-05 53.4 8.4 92 516-610 226-318 (730)
356 COG3973 Superfamily I DNA and 89.7 1.1 2.4E-05 50.9 8.2 69 306-380 217-285 (747)
357 cd03239 ABC_SMC_head The struc 89.6 0.63 1.4E-05 45.6 5.6 41 433-473 115-156 (178)
358 TIGR00959 ffh signal recogniti 89.5 6.2 0.00013 44.2 13.9 54 433-486 181-235 (428)
359 COG2909 MalT ATP-dependent tra 89.4 1.8 3.9E-05 51.3 9.8 41 436-476 131-171 (894)
360 PRK14954 DNA polymerase III su 89.4 2.2 4.8E-05 50.1 10.7 40 432-472 125-164 (620)
361 TIGR00643 recG ATP-dependent D 89.4 1.3 2.7E-05 52.6 8.9 75 537-611 284-363 (630)
362 PRK08451 DNA polymerase III su 89.3 1.8 3.8E-05 49.9 9.6 40 432-472 115-154 (535)
363 COG4626 Phage terminase-like p 89.3 2.3 4.9E-05 48.3 10.2 150 301-473 61-223 (546)
364 PF01637 Arch_ATPase: Archaeal 89.2 0.83 1.8E-05 46.1 6.4 40 436-475 120-165 (234)
365 COG0513 SrmB Superfamily II DN 89.2 1.2 2.6E-05 51.4 8.4 86 521-610 81-179 (513)
366 COG0470 HolB ATPase involved i 89.1 1.5 3.3E-05 47.0 8.7 42 433-476 108-149 (325)
367 PF00437 T2SE: Type II/IV secr 89.0 0.94 2E-05 47.5 6.8 45 313-368 124-168 (270)
368 PRK00440 rfc replication facto 89.0 6.1 0.00013 42.2 13.3 38 434-472 102-139 (319)
369 TIGR00580 mfd transcription-re 88.9 1.5 3.2E-05 54.0 9.2 75 537-611 500-579 (926)
370 cd00267 ABC_ATPase ABC (ATP-bi 88.9 0.67 1.4E-05 44.2 5.1 45 433-477 97-141 (157)
371 COG1660 Predicted P-loop-conta 88.7 4.7 0.0001 41.4 11.0 151 318-474 3-171 (286)
372 KOG1133 Helicase of the DEAD s 88.6 0.55 1.2E-05 53.9 4.9 41 301-341 15-59 (821)
373 COG0593 DnaA ATPase involved i 88.5 2.2 4.7E-05 47.2 9.3 48 434-481 175-224 (408)
374 cd01130 VirB11-like_ATPase Typ 88.5 1.3 2.8E-05 43.7 7.0 32 301-332 9-41 (186)
375 TIGR02525 plasmid_TraJ plasmid 88.5 1.2 2.5E-05 49.0 7.2 27 315-342 148-174 (372)
376 PF03237 Terminase_6: Terminas 88.5 11 0.00024 40.8 15.2 142 320-488 1-152 (384)
377 PF03668 ATP_bind_2: P-loop AT 88.4 2.7 5.9E-05 44.0 9.4 27 546-572 256-282 (284)
378 PRK08699 DNA polymerase III su 88.3 1.1 2.4E-05 48.3 6.9 43 432-476 111-153 (325)
379 PRK14950 DNA polymerase III su 88.2 3.3 7.1E-05 48.7 11.2 41 432-474 118-158 (585)
380 COG2256 MGS1 ATPase related to 88.2 2.2 4.8E-05 46.5 8.7 19 317-335 49-67 (436)
381 PRK07940 DNA polymerase III su 88.1 1.5 3.3E-05 48.6 7.9 45 433-479 116-160 (394)
382 PRK14948 DNA polymerase III su 88.1 2 4.2E-05 50.7 9.2 40 433-474 120-159 (620)
383 PRK10436 hypothetical protein; 88.0 0.85 1.8E-05 51.6 6.0 38 303-341 203-242 (462)
384 PRK13342 recombination factor 88.0 3.6 7.8E-05 46.1 11.0 17 317-333 37-53 (413)
385 COG2109 BtuR ATP:corrinoid ade 88.0 3.2 7E-05 40.5 8.9 53 434-486 122-176 (198)
386 PRK05896 DNA polymerase III su 88.0 3.8 8.2E-05 47.7 11.2 43 433-477 118-160 (605)
387 TIGR02868 CydC thiol reductant 87.7 1.3 2.9E-05 51.3 7.5 40 432-471 486-525 (529)
388 PRK13900 type IV secretion sys 87.6 0.85 1.8E-05 49.4 5.5 21 312-332 156-176 (332)
389 TIGR00678 holB DNA polymerase 87.6 2.4 5.3E-05 41.7 8.4 40 433-474 95-134 (188)
390 PRK11034 clpA ATP-dependent Cl 87.6 5 0.00011 48.4 12.3 44 436-479 280-327 (758)
391 PF13555 AAA_29: P-loop contai 87.4 0.78 1.7E-05 36.4 3.6 25 316-342 23-47 (62)
392 COG0552 FtsY Signal recognitio 87.3 14 0.00029 39.7 13.8 129 318-485 141-279 (340)
393 COG1132 MdlB ABC-type multidru 87.2 2.2 4.9E-05 49.9 9.1 40 432-471 481-520 (567)
394 PRK09087 hypothetical protein; 87.2 2.1 4.5E-05 43.7 7.7 40 436-477 89-128 (226)
395 TIGR03878 thermo_KaiC_2 KaiC d 87.2 2.5 5.4E-05 44.1 8.5 27 315-341 35-61 (259)
396 KOG0701 dsRNA-specific nucleas 87.0 0.38 8.3E-06 60.9 2.6 94 539-632 294-399 (1606)
397 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.0 2 4.4E-05 40.4 7.0 40 432-474 86-125 (144)
398 PF06733 DEAD_2: DEAD_2; Inte 86.7 0.5 1.1E-05 46.1 2.8 43 405-448 117-159 (174)
399 PF03969 AFG1_ATPase: AFG1-lik 86.6 9.6 0.00021 41.8 12.9 46 433-479 126-172 (362)
400 COG2805 PilT Tfp pilus assembl 86.4 0.94 2E-05 47.4 4.6 50 277-345 104-153 (353)
401 cd03228 ABCC_MRP_Like The MRP 86.4 2.8 6E-05 40.6 7.8 42 432-474 112-153 (171)
402 cd03246 ABCC_Protease_Secretio 86.3 1.8 3.8E-05 42.1 6.4 43 432-474 112-154 (173)
403 PRK07133 DNA polymerase III su 86.1 1.9 4E-05 51.2 7.5 44 432-477 116-159 (725)
404 TIGR02655 circ_KaiC circadian 86.0 4 8.6E-05 46.8 10.1 52 315-378 262-313 (484)
405 cd03247 ABCC_cytochrome_bd The 86.0 4.3 9.3E-05 39.5 9.1 42 432-474 114-155 (178)
406 cd00984 DnaB_C DnaB helicase C 86.0 3.8 8.3E-05 42.0 9.1 29 314-342 11-39 (242)
407 PHA00729 NTP-binding motif con 86.0 5.6 0.00012 40.4 9.9 74 409-485 60-138 (226)
408 cd03229 ABC_Class3 This class 85.9 1.5 3.2E-05 42.8 5.7 48 432-479 116-164 (178)
409 COG2255 RuvB Holliday junction 85.9 1.8 4E-05 44.9 6.4 17 317-333 53-69 (332)
410 PF02572 CobA_CobO_BtuR: ATP:c 85.9 3.5 7.6E-05 40.1 8.1 51 433-483 95-147 (172)
411 PRK05973 replicative DNA helic 85.8 1.4 3E-05 45.3 5.6 84 283-378 22-114 (237)
412 cd03216 ABC_Carb_Monos_I This 85.8 1.2 2.5E-05 42.9 4.8 44 432-475 98-141 (163)
413 TIGR02858 spore_III_AA stage I 85.8 11 0.00023 39.7 12.3 25 308-332 100-127 (270)
414 TIGR02538 type_IV_pilB type IV 85.8 1 2.2E-05 52.6 5.1 38 303-341 301-340 (564)
415 PF10593 Z1: Z1 domain; Inter 85.7 2.2 4.9E-05 43.8 7.1 85 561-650 110-199 (239)
416 COG1074 RecB ATP-dependent exo 85.7 1.3 2.9E-05 56.0 6.5 59 315-379 15-73 (1139)
417 PRK10689 transcription-repair 85.7 2.8 6E-05 52.9 9.1 75 537-611 649-728 (1147)
418 PRK14970 DNA polymerase III su 85.4 8.4 0.00018 42.3 12.0 17 317-333 40-56 (367)
419 TIGR03880 KaiC_arch_3 KaiC dom 85.4 4 8.6E-05 41.4 8.8 51 316-378 16-66 (224)
420 COG0630 VirB11 Type IV secreto 85.4 1.6 3.5E-05 46.8 6.1 42 299-341 125-167 (312)
421 TIGR02524 dot_icm_DotB Dot/Icm 85.4 1.2 2.7E-05 48.6 5.3 26 315-341 133-158 (358)
422 PF14516 AAA_35: AAA-like doma 85.2 1.1 2.3E-05 48.7 4.6 40 304-344 18-58 (331)
423 KOG0733 Nuclear AAA ATPase (VC 85.0 3.3 7.2E-05 47.3 8.3 46 434-479 604-659 (802)
424 cd01129 PulE-GspE PulE/GspE Th 84.9 1.5 3.2E-05 46.0 5.4 38 303-341 65-104 (264)
425 PF12846 AAA_10: AAA-like doma 84.9 1.6 3.4E-05 46.1 5.8 43 316-369 1-43 (304)
426 PF03796 DnaB_C: DnaB-like hel 84.7 3.2 6.9E-05 43.2 7.9 39 315-363 18-56 (259)
427 PF02534 T4SS-DNA_transf: Type 84.7 1.1 2.3E-05 51.2 4.7 49 317-378 45-93 (469)
428 cd01126 TraG_VirD4 The TraG/Tr 84.7 0.8 1.7E-05 50.8 3.5 47 318-377 1-47 (384)
429 KOG0058 Peptide exporter, ABC 84.7 4.3 9.2E-05 47.5 9.3 41 432-473 620-660 (716)
430 KOG0331 ATP-dependent RNA heli 84.5 14 0.00031 42.1 13.1 89 538-630 166-272 (519)
431 cd03215 ABC_Carb_Monos_II This 84.5 3 6.4E-05 40.9 7.1 48 432-479 120-167 (182)
432 TIGR03819 heli_sec_ATPase heli 84.3 2.5 5.4E-05 46.0 7.0 40 291-332 154-194 (340)
433 KOG0344 ATP-dependent RNA heli 84.2 34 0.00073 39.2 15.7 98 325-444 366-466 (593)
434 TIGR03600 phage_DnaB phage rep 84.2 7 0.00015 43.9 10.8 29 313-341 191-219 (421)
435 COG1219 ClpX ATP-dependent pro 84.1 0.77 1.7E-05 48.3 2.8 26 315-342 96-121 (408)
436 PRK06904 replicative DNA helic 84.1 11 0.00023 43.0 12.3 53 313-376 218-270 (472)
437 PRK14953 DNA polymerase III su 84.1 3.8 8.3E-05 46.8 8.6 41 432-474 117-157 (486)
438 cd03276 ABC_SMC6_euk Eukaryoti 84.0 11 0.00024 37.5 11.1 46 433-478 130-178 (198)
439 COG0210 UvrD Superfamily I DNA 83.8 2.4 5.3E-05 50.5 7.3 71 301-380 2-72 (655)
440 PRK13764 ATPase; Provisional 83.7 2.1 4.6E-05 49.8 6.5 27 314-341 255-281 (602)
441 TIGR00416 sms DNA repair prote 83.7 4.3 9.4E-05 46.0 8.8 52 315-378 93-144 (454)
442 PRK07414 cob(I)yrinic acid a,c 83.6 12 0.00026 36.5 10.6 51 433-483 114-166 (178)
443 cd03230 ABC_DR_subfamily_A Thi 83.3 2.5 5.4E-05 41.1 5.9 43 432-474 111-153 (173)
444 KOG0347 RNA helicase [RNA proc 83.3 2.6 5.7E-05 47.3 6.6 53 539-595 265-321 (731)
445 TIGR02012 tigrfam_recA protein 82.9 3.8 8.2E-05 44.0 7.6 26 315-341 54-79 (321)
446 TIGR02533 type_II_gspE general 82.9 1.5 3.3E-05 50.1 4.8 38 303-341 227-266 (486)
447 KOG2028 ATPase related to the 82.8 5.2 0.00011 43.0 8.2 22 312-333 156-179 (554)
448 TIGR00767 rho transcription te 82.8 2.6 5.7E-05 46.4 6.3 20 313-332 165-184 (415)
449 PHA03372 DNA packaging termina 82.7 12 0.00027 43.1 11.7 133 314-476 200-338 (668)
450 PRK06647 DNA polymerase III su 82.7 6.2 0.00013 46.0 9.8 42 432-475 117-158 (563)
451 PRK08058 DNA polymerase III su 82.6 3.9 8.4E-05 44.3 7.6 41 432-474 108-148 (329)
452 COG4555 NatA ABC-type Na+ tran 82.6 2.8 6.1E-05 41.5 5.8 54 432-485 149-202 (245)
453 PRK09354 recA recombinase A; P 82.3 5.4 0.00012 43.3 8.5 43 315-368 59-101 (349)
454 PRK03992 proteasome-activating 82.2 5.2 0.00011 44.4 8.7 16 317-332 166-181 (389)
455 PRK13897 type IV secretion sys 82.1 1.3 2.8E-05 51.8 4.0 49 317-378 159-207 (606)
456 cd00268 DEADc DEAD-box helicas 82.1 7.5 0.00016 38.4 9.1 72 536-611 68-149 (203)
457 TIGR02788 VirB11 P-type DNA tr 82.1 2.2 4.7E-05 45.8 5.4 20 313-332 141-160 (308)
458 cd03222 ABC_RNaseL_inhibitor T 82.0 4.3 9.4E-05 39.7 7.0 46 433-478 88-134 (177)
459 KOG0741 AAA+-type ATPase [Post 81.9 4.4 9.6E-05 45.6 7.6 48 433-480 597-654 (744)
460 PRK14971 DNA polymerase III su 81.9 8.9 0.00019 45.2 10.8 42 432-475 119-160 (614)
461 TIGR01243 CDC48 AAA family ATP 81.9 5.5 0.00012 48.2 9.4 16 317-332 488-503 (733)
462 COG1197 Mfd Transcription-repa 81.8 13 0.00027 46.1 12.1 130 306-447 732-886 (1139)
463 PRK11634 ATP-dependent RNA hel 81.8 5.1 0.00011 47.4 8.8 70 537-610 74-154 (629)
464 PRK07399 DNA polymerase III su 81.7 8.7 0.00019 41.3 9.9 40 432-473 122-161 (314)
465 TIGR00763 lon ATP-dependent pr 81.6 19 0.00041 43.9 13.8 17 316-332 347-363 (775)
466 TIGR01243 CDC48 AAA family ATP 81.3 9.6 0.00021 46.2 11.1 17 316-332 212-228 (733)
467 PRK14701 reverse gyrase; Provi 81.3 5 0.00011 52.3 9.1 60 537-596 122-187 (1638)
468 cd00983 recA RecA is a bacter 81.2 5.4 0.00012 42.9 7.9 42 316-368 55-96 (325)
469 PF02606 LpxK: Tetraacyldisacc 81.1 63 0.0014 35.0 16.1 225 326-595 47-287 (326)
470 COG4185 Uncharacterized protei 81.1 3.5 7.5E-05 39.2 5.6 18 319-336 5-22 (187)
471 COG0541 Ffh Signal recognition 80.9 18 0.00039 40.1 11.8 56 432-487 180-236 (451)
472 TIGR02639 ClpA ATP-dependent C 80.9 14 0.0003 44.7 12.3 18 317-334 204-221 (731)
473 TIGR03345 VI_ClpV1 type VI sec 80.8 5.5 0.00012 48.8 8.9 16 318-333 598-613 (852)
474 PRK04841 transcriptional regul 80.8 13 0.00028 46.1 12.5 42 436-477 123-164 (903)
475 cd03289 ABCC_CFTR2 The CFTR su 80.7 2.8 6.2E-05 44.1 5.6 42 432-474 154-195 (275)
476 PHA00350 putative assembly pro 80.6 10 0.00022 42.0 10.0 23 319-341 4-27 (399)
477 PRK06305 DNA polymerase III su 80.6 7.7 0.00017 44.0 9.4 37 433-470 120-156 (451)
478 cd03278 ABC_SMC_barmotin Barmo 80.5 7.9 0.00017 38.5 8.5 39 433-471 134-172 (197)
479 TIGR03689 pup_AAA proteasome A 80.5 7.6 0.00016 44.5 9.2 17 316-332 216-232 (512)
480 TIGR02397 dnaX_nterm DNA polym 80.3 14 0.00031 40.1 11.3 16 318-333 38-53 (355)
481 cd01131 PilT Pilus retraction 80.1 1.6 3.4E-05 43.5 3.3 14 319-332 4-17 (198)
482 PRK08760 replicative DNA helic 80.1 8.8 0.00019 43.8 9.7 27 314-340 227-253 (476)
483 COG1200 RecG RecG-like helicas 80.1 7.4 0.00016 45.3 8.9 76 536-611 310-390 (677)
484 cd03238 ABC_UvrA The excision 79.6 6.1 0.00013 38.6 7.2 38 435-472 108-145 (176)
485 PRK04537 ATP-dependent RNA hel 79.6 11 0.00024 44.1 10.6 74 356-443 258-334 (572)
486 cd01393 recA_like RecA is a b 79.6 4.3 9.4E-05 41.1 6.4 25 315-339 18-42 (226)
487 PHA03311 helicase-primase subu 79.5 3.1 6.6E-05 48.8 5.6 44 317-376 72-115 (828)
488 TIGR03346 chaperone_ClpB ATP-d 79.2 13 0.00028 45.9 11.3 18 317-334 195-212 (852)
489 TIGR00665 DnaB replicative DNA 79.2 11 0.00024 42.5 10.2 28 314-341 193-220 (434)
490 CHL00176 ftsH cell division pr 78.9 14 0.00029 43.9 10.9 16 317-332 217-232 (638)
491 TIGR02640 gas_vesic_GvpN gas v 78.8 2.5 5.5E-05 44.1 4.5 27 307-333 12-38 (262)
492 PRK07004 replicative DNA helic 78.6 9.6 0.00021 43.3 9.4 28 313-340 210-237 (460)
493 COG1126 GlnQ ABC-type polar am 78.5 1.3 2.7E-05 44.4 1.9 27 313-341 25-51 (240)
494 KOG2543 Origin recognition com 78.4 32 0.0007 37.5 12.4 45 435-479 116-162 (438)
495 cd01125 repA Hexameric Replica 78.3 22 0.00048 36.4 11.3 61 318-380 3-65 (239)
496 TIGR03375 type_I_sec_LssB type 78.3 6.9 0.00015 47.1 8.6 41 432-472 617-657 (694)
497 PRK10865 protein disaggregatio 78.1 17 0.00037 44.7 11.9 17 317-333 200-216 (857)
498 TIGR03345 VI_ClpV1 type VI sec 78.1 16 0.00034 45.0 11.6 17 317-333 209-225 (852)
499 KOG2036 Predicted P-loop ATPas 78.0 53 0.0012 38.5 14.5 63 303-375 255-324 (1011)
500 PRK04328 hypothetical protein; 77.8 4.3 9.2E-05 42.1 5.8 52 315-378 22-73 (249)
No 1
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-81 Score=659.50 Aligned_cols=463 Identities=49% Similarity=0.761 Sum_probs=430.6
Q ss_pred CCCCCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q 004518 273 DSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQR 352 (747)
Q Consensus 273 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~ 352 (747)
+++.....|+.+.|++..+++++.+||+.+|++|+.+++.++.|+|+++.|.||+|||++|++|+++.+++.+...+
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--- 152 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--- 152 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC---
Confidence 45666788999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccC
Q 004518 353 RPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRL 432 (747)
Q Consensus 353 ~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L 432 (747)
++..+|||||||+||.|++.+++++..+++++.+++++||++...+..++.+ +++|+|||||+|++||++...|.+
T Consensus 153 -~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~-- 228 (543)
T KOG0342|consen 153 -NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLF-- 228 (543)
T ss_pred -CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchh--
Confidence 5778999999999999999999999999999999999999999999988887 799999999999999999887653
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEE
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 512 (747)
.+++++|+||||+++++||++.+.+|+..+|+++|+++||||.++++..+++..++..+.+++++......++..+.|.|
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgy 308 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGY 308 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEE
Q 004518 513 LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILV 592 (747)
Q Consensus 513 ~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLv 592 (747)
++++.+.++.+++.+++++... +++||||+|+..+..++..|+...++|..|||+++|..|..++..|++.+..|||
T Consensus 309 vv~~~~~~f~ll~~~LKk~~~~---~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~ 385 (543)
T KOG0342|consen 309 VVAPSDSRFSLLYTFLKKNIKR---YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILV 385 (543)
T ss_pred EeccccchHHHHHHHHHHhcCC---ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEE
Confidence 9999999999999999987653 7999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCccCCCCCCCchhHHH
Q 004518 593 TSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKK 672 (747)
Q Consensus 593 aT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~ 672 (747)
||||++||+|+|+|++||+||+|.++.+|+||+|||||.|+.|++++|+.|||..|+..++++++.+.+++..+....+.
T Consensus 386 cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~~~e~~~~~~~~v~~ 465 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLEEFEFPPLKPEDVQS 465 (543)
T ss_pred ecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCcccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877766
Q ss_pred HHHHHHHHHHhcH---HHHHHHHHHHHhcccccccCcccHHHHHHHHHHHcCCCCCCCCChhhhhhcCCCCCCCCCC
Q 004518 673 VERALSHVEMKNK---EAAYQAWLGYYNSNKKVGRDKYKLVELANEYSRSMGLDNPPAIPKLVLGKMGLRNIPGLRS 746 (747)
Q Consensus 673 ~~~~~~~~~~~~~---~~a~~s~l~~y~~~~~~~~~~~~~~~~~~~~a~~~gl~~~p~i~~~~~~~~~~~~~pgl~~ 746 (747)
+.+.+-+..+..+ ..||++|++||++|........+..+++ +++++||+..||.++....+++|+.+.+|++.
T Consensus 466 ~~~~li~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp~v~~~i~~~~~~k~~~~~~~ 541 (543)
T KOG0342|consen 466 QLEKLISKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPPAVDLKIDGKMGLKGNKGLRG 541 (543)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCccceeeccccccccCCCCCCC
Confidence 6555555444443 4667779999999987766667778888 99999999999999999999999999999875
No 2
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-70 Score=568.15 Aligned_cols=444 Identities=33% Similarity=0.522 Sum_probs=379.0
Q ss_pred CCcCCC--CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCe
Q 004518 279 SRFDQC--SISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI 356 (747)
Q Consensus 279 ~~f~~l--~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 356 (747)
..|+++ +|++++++++...||..+||+|..+||.+++++||++.|+||||||++|++|+++.+++.....+.. ..
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~---~v 80 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG---QV 80 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc---ce
Confidence 456665 4669999999999999999999999999999999999999999999999999999997655432211 35
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCcc
Q 004518 357 LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436 (747)
Q Consensus 357 ~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~ 436 (747)
.+|||+||||||.|+.+++..+..+.+++.+.+++||.+...+...+...+++|+|+|||+|.++++..... +.+.+++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~-l~~rsLe 159 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEK-LSFRSLE 159 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhh-ccccccc
Confidence 799999999999999999999999888999999999999999999999999999999999999999875332 3366999
Q ss_pred EEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC
Q 004518 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 437 ~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
++|+||||+++++||...+..|++.+|+++.|-+||||.+.++..+.+..+.++..+.. .......++..+...|+.+.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V-~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSV-KEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeee-cccccccCchhhcceeeEec
Confidence 99999999999999999999999999999999999999999999999999997766543 33333346777888999999
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
++.|+..+..+|... ..+++|||++|+..++++...|... ...+..+||.|.+.+|.+++..|.+....+|+||
T Consensus 239 a~eK~~~lv~~L~~~----~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNNN----KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred HHHHHHHHHHHHhcc----ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 999999999988763 3469999999999999999998876 6789999999999999999999999889999999
Q ss_pred CCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh---CCCccCCCCCCCchhHH
Q 004518 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVPSVDPDTKK 671 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~---~~i~~~~~~~~~~~~~~ 671 (747)
||++||||||+|++||+||+|.++++|+||+|||||+|+.|.+++|+.+.|..|++.++- +++.+...+.-...
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~--- 391 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLS--- 391 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchh---
Confidence 999999999999999999999999999999999999999999999999999888887664 22333222211111
Q ss_pred HHHHHHHHHHHhc------HHHHHHHHHHHHhcccccccCcccHHHH-HHHHHHHcCCCCCCCCChhhhhhcC
Q 004518 672 KVERALSHVEMKN------KEAAYQAWLGYYNSNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAIPKLVLGKMG 737 (747)
Q Consensus 672 ~~~~~~~~~~~~~------~~~a~~s~l~~y~~~~~~~~~~~~~~~~-~~~~a~~~gl~~~p~i~~~~~~~~~ 737 (747)
+-..+.++...+ ...||.||+++|..| .+..++++.+| ...+|..|||...|+||++..-+.+
T Consensus 392 -~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H--~cs~Ifr~kdLd~~~lA~~YgLl~lP~M~Elk~~~~~ 461 (567)
T KOG0345|consen 392 -VYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKH--HCSYIFRLKDLDLGKLATLYGLLRLPKMPELKQYKIG 461 (567)
T ss_pred -HHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhc--ceeEEEeecCCcHHHHHHHHHHHhCCCcHHHhhhhcc
Confidence 333344444333 357899999999865 34567888888 5899999999999999998765543
No 3
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2e-68 Score=562.84 Aligned_cols=437 Identities=34% Similarity=0.589 Sum_probs=379.5
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
...|.+|+|+..++++|+..+|..+|.+|+.+||..+.|+|||..|.||||||++|++|+|++|+..++.. ..|.-
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGlG 143 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGLG 143 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC----CCCce
Confidence 45799999999999999999999999999999999999999999999999999999999999999887643 34677
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
+|||.|||+||.|+++++.+.++++ .+++++++||.....+..++. .++|+|||||+|+.||.....| .-+++.+
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~--~mNILVCTPGRLLQHmde~~~f--~t~~lQm 218 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERIS--QMNILVCTPGRLLQHMDENPNF--STSNLQM 218 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhh--cCCeEEechHHHHHHhhhcCCC--CCCcceE
Confidence 9999999999999999999999987 899999999999777666654 4899999999999999987644 3578999
Q ss_pred EEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc
Q 004518 438 LVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 438 vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
+|+||||+|++|||...+..|+..+|+.+|+++||||.+..+..+++..+. ++.++.+.......++..+.|+|+.++.
T Consensus 219 LvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~-dP~~vsvhe~a~~atP~~L~Q~y~~v~l 297 (758)
T KOG0343|consen 219 LVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLK-DPVYVSVHENAVAATPSNLQQSYVIVPL 297 (758)
T ss_pred EEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcC-CCcEEEEeccccccChhhhhheEEEEeh
Confidence 999999999999999999999999999999999999999999999999886 5677776666667888899999999999
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
..|+.+|+.+|..++. .++|||+.|++++.+++..|+++ |+++..|||.|+|..|..++.+|...+..||+|||
T Consensus 298 ~~Ki~~L~sFI~shlk----~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSHLK----KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred hhHHHHHHHHHHhccc----cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 9999999999988754 48999999999999999999987 88999999999999999999999999999999999
Q ss_pred CcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcch-HHHHHHhhhCCCccCCCCCCCchhHHHHH
Q 004518 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWE-EFFLSTIKDLPILKAPVPSVDPDTKKKVE 674 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e-~~~l~~l~~~~i~~~~~~~~~~~~~~~~~ 674 (747)
+++||+|+|.|++||++|.|.++++|+||+||++|.+..|.|+++++|.+ +.++..|++..|....+ .++++....+.
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i-~i~~~k~~~i~ 452 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEI-KIDPEKLTSIR 452 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhh-ccCHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999988 77888888754322211 23455555566
Q ss_pred HHHHHHHHhcH---HHHHHHHHHHHhccccc-ccCcccHHHH-HHHHHHHcCCCCCCC-CC
Q 004518 675 RALSHVEMKNK---EAAYQAWLGYYNSNKKV-GRDKYKLVEL-ANEYSRSMGLDNPPA-IP 729 (747)
Q Consensus 675 ~~~~~~~~~~~---~~a~~s~l~~y~~~~~~-~~~~~~~~~~-~~~~a~~~gl~~~p~-i~ 729 (747)
..++.+..+.+ .-+.++|+.|.++.... ....|++..+ +.+||.+|||...|+ |+
T Consensus 453 ~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p~~~~ 513 (758)
T KOG0343|consen 453 NKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTPRIVR 513 (758)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCchhcc
Confidence 66666555443 34445666665554322 4456776666 589999999999998 44
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-68 Score=541.39 Aligned_cols=375 Identities=36% Similarity=0.573 Sum_probs=340.8
Q ss_pred CcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCe
Q 004518 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI 356 (747)
Q Consensus 277 ~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 356 (747)
+..+|.++++.+.+++++...++..||++|+++||.++.|+|||+.|+||||||.+|++|++++++..+. .+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--------~~ 130 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--------LF 130 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------Cc
Confidence 3467899999999999999999999999999999999999999999999999999999999999997543 36
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCcc
Q 004518 357 LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436 (747)
Q Consensus 357 ~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~ 436 (747)
++||++||||||.|+.+.+..++... ++.+.++.||.++..+...+.+. ++|+|||||+|.+++.+.+.| .|..++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kk-PhilVaTPGrL~dhl~~Tkgf--~le~lk 206 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKK-PHILVATPGRLWDHLENTKGF--SLEQLK 206 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcC-CCEEEeCcHHHHHHHHhccCc--cHHHhH
Confidence 79999999999999999999998765 89999999999998877776554 799999999999999977654 578999
Q ss_pred EEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC
Q 004518 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 437 ~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
++|+||||+++++.|...+.+|+..+|..+|+++||||++..+.++....+.++..+.. .....+...+.|.|...+
T Consensus 207 ~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~---s~ky~tv~~lkQ~ylfv~ 283 (476)
T KOG0330|consen 207 FLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAV---SSKYQTVDHLKQTYLFVP 283 (476)
T ss_pred HHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEec---cchhcchHHhhhheEecc
Confidence 99999999999999999999999999999999999999999999999887775544432 334567778999999999
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
...|..+|..++.+.. +..+||||+++..+.+++-.|+..|+.+.+|||.|++..|.-.++.|++|.+.||||||+
T Consensus 284 ~k~K~~yLV~ll~e~~----g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDV 359 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNELA----GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDV 359 (476)
T ss_pred ccccchhHHHHHHhhc----CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecch
Confidence 9999999999998653 468999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCccCCCCCCCchhH
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTK 670 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~~~~~~~~~~~~ 670 (747)
++||+|||.|++|||||+|.+..+|+||+||+||+|..|.++.|++.||.+.+.+|+...-.+.+.+.++.+..
T Consensus 360 aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~ 433 (476)
T KOG0330|consen 360 ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEV 433 (476)
T ss_pred hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999986666666666665443
No 5
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-66 Score=547.67 Aligned_cols=450 Identities=32% Similarity=0.504 Sum_probs=380.0
Q ss_pred CCCCCCCcCCcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCC
Q 004518 271 KHDSFMSESRFDQCSISALSLKGIKD-AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR 349 (747)
Q Consensus 271 ~~~~~~~~~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~ 349 (747)
....++....|..++|++.+...|.. |++..||.+|+++||.+++++|++|.++||||||++|++|+++.+......
T Consensus 128 v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k-- 205 (708)
T KOG0348|consen 128 VSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK-- 205 (708)
T ss_pred ccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc--
Confidence 33455667889999999999999976 799999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccccc
Q 004518 350 DQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFA 429 (747)
Q Consensus 350 ~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~ 429 (747)
-+...|+.+|||+||||||.|+++.+.++.+.+..+..+++.||.....+..++.++ ++|+|+|||+|++||.+...+
T Consensus 206 i~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i- 283 (708)
T KOG0348|consen 206 IQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSI- 283 (708)
T ss_pred ccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccchh-
Confidence 335668899999999999999999999999988888889999999999999998765 899999999999999987654
Q ss_pred ccCCCccEEEEeCCccccCCCcHHHHHHHHHHC-------------CCCCeEEEEeccCChHHHHHHHHHhcCCceeeee
Q 004518 430 TRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV-------------PKQRQTLLFSATVPEEVRQICHIALKRDHEFINT 496 (747)
Q Consensus 430 ~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~-------------~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~ 496 (747)
.++.+.+||+||||+++++||.+.+..|++.+ |.++|.+++|||++..+..+....++. +.+|..
T Consensus 284 -~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkD-pv~I~l 361 (708)
T KOG0348|consen 284 -KFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKD-PVYISL 361 (708)
T ss_pred -eeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccC-ceeeec
Confidence 46789999999999999999999999998876 235799999999999999999988874 444441
Q ss_pred ccC-----------------------CccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHH
Q 004518 497 VEE-----------------------GSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMV 553 (747)
Q Consensus 497 ~~~-----------------------~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l 553 (747)
... .....++.+.|.|+++++..++..|..+|...+......++|||+.+.+.+++-
T Consensus 362 d~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFH 441 (708)
T KOG0348|consen 362 DKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFH 441 (708)
T ss_pred cchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHH
Confidence 110 012234567788999999999999999999998887777999999999999999
Q ss_pred HHHHHhc----------------------cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEE
Q 004518 554 ADLLGEL----------------------KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQ 611 (747)
Q Consensus 554 ~~~L~~~----------------------~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~ 611 (747)
+..|... +..++.|||.|+|.+|..++..|...+..||+||||++||||+|.|++||+
T Consensus 442 y~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ 521 (708)
T KOG0348|consen 442 YSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ 521 (708)
T ss_pred HHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE
Confidence 9888653 356899999999999999999999999999999999999999999999999
Q ss_pred eCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCc--cCCCCC----CCc-----------hhHHHHH
Q 004518 612 VGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPIL--KAPVPS----VDP-----------DTKKKVE 674 (747)
Q Consensus 612 ~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~--~~~~~~----~~~-----------~~~~~~~ 674 (747)
||.|.++++|+||+|||+|+|..|.+++|+.|.|..|++.++...+. +.+++. +.+ +....++
T Consensus 522 Yd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~~k~~~~e~~~~at~~q 601 (708)
T KOG0348|consen 522 YDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKDKAKTKEWQERATTLQ 601 (708)
T ss_pred eCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCcccccccchhhhhhHHHHH
Confidence 99999999999999999999999999999999999999988764322 111111 110 1112223
Q ss_pred HHHHHHHHhc------HHHHHHHHHHHHhcccccccCcccHHHH-HHHHHHHcCCCCCC
Q 004518 675 RALSHVEMKN------KEAAYQAWLGYYNSNKKVGRDKYKLVEL-ANEYSRSMGLDNPP 726 (747)
Q Consensus 675 ~~~~~~~~~~------~~~a~~s~l~~y~~~~~~~~~~~~~~~~-~~~~a~~~gl~~~p 726 (747)
..++.+...+ ...+|.+|+..|.+|....+.+|++..+ .+.+|+||+|.+.|
T Consensus 602 ~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSFaLReaP 660 (708)
T KOG0348|consen 602 LNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSFALREAP 660 (708)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhhHhhhcc
Confidence 3333322221 3578999999999998777788999888 49999999999999
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-65 Score=558.32 Aligned_cols=365 Identities=37% Similarity=0.544 Sum_probs=328.6
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE
Q 004518 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVL 359 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vL 359 (747)
.|..++|++.+.++++..||+.|||||.++||.++.|+|+|..|.||||||++|++|++.++.+... ......++.+|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~--~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG--KLSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc--cccCCCCCeEE
Confidence 8999999999999999999999999999999999999999999999999999999999999987311 22334467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEE
Q 004518 360 VICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLV 439 (747)
Q Consensus 360 Il~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vI 439 (747)
||+||||||.|+...+.+++... .+++.+++||.....+...+.. +++|+|+|||+|+++|+... ..|+.+.++|
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~-gvdiviaTPGRl~d~le~g~---~~l~~v~ylV 244 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLER-GVDVVIATPGRLIDLLEEGS---LNLSRVTYLV 244 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhc-CCcEEEeCChHHHHHHHcCC---ccccceeEEE
Confidence 99999999999999999998765 5779999999999988888865 48999999999999999873 7789999999
Q ss_pred EeCCccccCCCcHHHHHHHHHHC-CCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc
Q 004518 440 LDEADHLLDMGFRKDIEKIIAAV-PKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518 (747)
Q Consensus 440 iDEAh~ll~~~f~~~l~~il~~~-~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 518 (747)
+||||+|+++||...+..|+..+ ++.+|++++|||+|.+++.++..++. .+..+.+...........+.|....++..
T Consensus 245 LDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 245 LDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred eccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 99999999999999999999999 66679999999999999999999998 55555554333344556778888888888
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 519 ~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
.|...|..+|..+. ...++++||||.|+..|+.|+..|+..++++..|||+.+|.+|..+++.|++|+..||||||+|+
T Consensus 324 ~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331|consen 324 AKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccc
Confidence 88888999998876 55667999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhh
Q 004518 599 RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653 (747)
Q Consensus 599 ~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~ 653 (747)
||||||+|++|||||+|.++++|+||+|||||+|+.|.++.|++..+......+.
T Consensus 403 RGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 403 RGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred ccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988776655443
No 7
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-65 Score=538.10 Aligned_cols=361 Identities=35% Similarity=0.552 Sum_probs=321.2
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
..+|.+++|+..+++++..+||..|||+|..+||..+-|+|++.||.||||||.+|.+|+|+.|+-.+. +-+-.+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk-----~~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK-----KVAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc-----cCccee
Confidence 468999999999999999999999999999999999999999999999999999999999999875443 344567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
||||+|||+||.|++.+.++++.|. .+.+++++||.+...+...+... +||+|+|||+|.+||.+...| .|.+|.+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~sf--~ldsiEV 330 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSPSF--NLDSIEV 330 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCCCc--cccceeE
Confidence 9999999999999999999999987 69999999999999877777654 899999999999999987755 5889999
Q ss_pred EEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC-
Q 004518 438 LVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP- 516 (747)
Q Consensus 438 vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~- 516 (747)
+|+||||+|++.+|...+..|+..+|+++|+++||||++.++..++...+++|..+.... ...+...+.|-|+...
T Consensus 331 LvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~---~~~~a~~LtQEFiRIR~ 407 (691)
T KOG0338|consen 331 LVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP---NKDTAPKLTQEFIRIRP 407 (691)
T ss_pred EEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC---ccccchhhhHHHheecc
Confidence 999999999999999999999999999999999999999999999999998776654321 2233345556555433
Q ss_pred --cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 517 --LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 517 --~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
...+-.++..++...+. ..+|||+.|+..|+++.-.|.-+|+++.-+||.++|.+|...++.|+++.+.|||||
T Consensus 408 ~re~dRea~l~~l~~rtf~----~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaT 483 (691)
T KOG0338|consen 408 KREGDREAMLASLITRTFQ----DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIAT 483 (691)
T ss_pred ccccccHHHHHHHHHHhcc----cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEe
Confidence 22345566666666552 489999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh
Q 004518 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~ 654 (747)
|+|+|||||++|..||||..|.+...|+||+|||+|+|+.|.++.|+...|...++.+-+
T Consensus 484 DvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 484 DVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred chhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988887644
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-61 Score=549.38 Aligned_cols=362 Identities=40% Similarity=0.608 Sum_probs=326.5
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 279 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
..|.++++++.+++++.++||..|||+|..+||.++.|+|++++|+||||||++|++|+++.+..... . .... +
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~----~-~~~~-a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE----R-KYVS-A 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc----c-CCCc-e
Confidence 67999999999999999999999999999999999999999999999999999999999999764210 0 1111 9
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
||++|||+||.|+++.+..+..+..++.+.+++||.+...+...+.. +++|+|+|||+|++++... .+.++.++++
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~---~l~l~~v~~l 178 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRG---KLDLSGVETL 178 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcC---CcchhhcCEE
Confidence 99999999999999999999887657889999999999988877766 4999999999999999987 3678999999
Q ss_pred EEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 518 (747)
|+||||+|+++||.+.+..|+..+|.++|+++||||++..+..+.+.++.++. .+.+.......+...+.|.++.+...
T Consensus 179 VlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 179 VLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred EeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999998544 55444333344677899999988876
Q ss_pred c-chHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc
Q 004518 519 L-HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597 (747)
Q Consensus 519 ~-k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~ 597 (747)
. |+.+|..++... ...++||||+|+..+..++..|...|+++..|||+|+|.+|.++++.|++|...||||||++
T Consensus 258 ~~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva 333 (513)
T COG0513 258 EEKLELLLKLLKDE----DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA 333 (513)
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh
Confidence 6 888888887654 23479999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcc-hHHHHHHhhhC
Q 004518 598 ARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW-EEFFLSTIKDL 655 (747)
Q Consensus 598 ~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~-e~~~l~~l~~~ 655 (747)
+||||||+|++|||||+|.++++|+||+|||||+|..|.++.|+++. |...+..+++.
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred hccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 78888888775
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-61 Score=482.75 Aligned_cols=366 Identities=34% Similarity=0.543 Sum_probs=327.6
Q ss_pred CcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCe
Q 004518 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI 356 (747)
Q Consensus 277 ~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 356 (747)
....|+.|+|++|+.+.++.+|+..|||+|+.|||.|+.|+|+|-||.||||||++|.+|+++.+.+.++ +.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~--------gi 76 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY--------GI 76 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC--------cc
Confidence 4578999999999999999999999999999999999999999999999999999999999999976654 56
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccc-ccccCCCc
Q 004518 357 LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAG-FATRLMGV 435 (747)
Q Consensus 357 ~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~-~~~~L~~i 435 (747)
.++|+.|||+||.|+++.+..+++.. ++++.+++||+++-.+...+. ..++|+|+|||+|.+++..+.+ ....++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~-~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILS-DRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcc-cCCCeEecCccccccccccCCccchhhhhce
Confidence 79999999999999999999887765 899999999999877666664 4589999999999999987622 22446899
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccC-CccccccceeEEEEe
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEE-GSEETHEQVRQMHLV 514 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~-~~~~~~~~i~~~~~~ 514 (747)
+++|+||||++++.+|...+..+...+|..+|+++||||++..+..+.......+..+ .... ....+.+.+.|.|+.
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~--~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAF--ELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccce--EEeccCCCCchhhhhhheee
Confidence 9999999999999999999999999999999999999999999888765544432112 1111 234566788899999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 515 ~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
++.+.+-.+++.+|+..-.+ ..+.++||+++..+|+.++..|+.+.+.+..+||.|+|++|...+.+|+.+..+|||||
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~-~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENK-ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred cchhhhHHHHHHHHhhhhhc-cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 99999999999999887554 56799999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
|||+||+|||.|++|||||+|.+|..|+||+||++|+|+.|.++.++++.|...+..|++-
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~ 372 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEE 372 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988864
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.2e-57 Score=519.02 Aligned_cols=368 Identities=33% Similarity=0.481 Sum_probs=317.0
Q ss_pred CCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 355 (747)
.+..+|+++++++.++++|.++||..||++|.++||.+++++|+|++||||||||++|++|++.++...... ....+
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~g 203 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDG 203 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCC
Confidence 345789999999999999999999999999999999999999999999999999999999999998754321 12235
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCc
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435 (747)
Q Consensus 356 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i 435 (747)
+.+|||+|||+||.|+.+.+..++... .+.+.+++||.....+...+. .+++|+|+||++|++++.... ..|.++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~-~~~~IlVaTPgrL~d~l~~~~---~~l~~v 278 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALR-RGVEILIACPGRLIDFLESNV---TNLRRV 278 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHHHHHHHcCC---CChhhC
Confidence 779999999999999999999987654 678888999988776666664 458999999999999998752 557899
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
++|||||||+|++++|...+..|+..+++.+|+++||||++.++..+...++...+..+.+.... ......+.+.....
T Consensus 279 ~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~ 357 (545)
T PTZ00110 279 TYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVV 357 (545)
T ss_pred cEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEE
Confidence 99999999999999999999999999999999999999999999999888876544444332211 12234566666666
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
....+...|..++..... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|+..|||||+
T Consensus 358 ~~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd 435 (545)
T PTZ00110 358 EEHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD 435 (545)
T ss_pred echhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc
Confidence 666677777777766543 346999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh
Q 004518 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~ 654 (747)
++++|||||+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+......|.+
T Consensus 436 v~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 436 VASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988766655543
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.6e-58 Score=486.10 Aligned_cols=365 Identities=32% Similarity=0.526 Sum_probs=324.2
Q ss_pred CCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCC-CCCCC
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR-DQRRP 354 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~-~~~~~ 354 (747)
.+..+|++.++..++++.+...||..|+|+|.++||..++++|+|..|+||||||++|++|++-.+...++..+ .....
T Consensus 242 nplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~ 321 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIE 321 (673)
T ss_pred ccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999988775444 24456
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCC
Q 004518 355 PILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 355 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
|+.++|++|||+||+|+.++..+++... ++.+..++||.....+--++. .+|+|+|+|||+|++.|.+. .+-|+.
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls-~gceiviatPgrLid~Lenr---~lvl~q 396 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLS-MGCEIVIATPGRLIDSLENR---YLVLNQ 396 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhh-ccceeeecCchHHHHHHHHH---HHHhcc
Confidence 7889999999999999999999998876 688999999998876655554 45999999999999999986 356889
Q ss_pred ccEEEEeCCccccCCCcHHHHHHHHHHCCCC-------------------------CeEEEEeccCChHHHHHHHHHhcC
Q 004518 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ-------------------------RQTLLFSATVPEEVRQICHIALKR 489 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~-------------------------~q~il~SATl~~~v~~l~~~~~~~ 489 (747)
+.+||+||||+|.|+||...+..|+..+|.. +|+++||||+|+.+..+++.++..
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~ 476 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR 476 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC
Confidence 9999999999999999999999999998731 799999999999999999999986
Q ss_pred CceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccC
Q 004518 490 DHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHS 569 (747)
Q Consensus 490 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~ 569 (747)
+. ++.+ .........+.|.......+.++..|..++... ...++|||+|+++.|+.|++.|.+.++.+..|||
T Consensus 477 pv-~vti--g~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg 549 (673)
T KOG0333|consen 477 PV-VVTI--GSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHG 549 (673)
T ss_pred Ce-EEEe--ccCCCCccchheEEEEecchHHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHhhccceEEEeeC
Confidence 54 3333 233455567888888888888888888888765 2349999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHH
Q 004518 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFL 649 (747)
Q Consensus 570 ~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l 649 (747)
+-+|++|..++..|++|...||||||+|+||||||+|.+|||||++.++.+|+||+|||||+|+.|.++.|+++.|...+
T Consensus 550 ~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ 629 (673)
T KOG0333|consen 550 GKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVF 629 (673)
T ss_pred CccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999885544
Q ss_pred HHh
Q 004518 650 STI 652 (747)
Q Consensus 650 ~~l 652 (747)
..|
T Consensus 630 ydL 632 (673)
T KOG0333|consen 630 YDL 632 (673)
T ss_pred HHH
Confidence 333
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=8.4e-57 Score=518.51 Aligned_cols=358 Identities=34% Similarity=0.517 Sum_probs=315.6
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 279 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
.+|.+++|++.++++|.++||..|||+|+++||.+++++|+|++||||||||++|++|+++.+.... ..+++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~ 77 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQI 77 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeE
Confidence 4699999999999999999999999999999999999999999999999999999999999874321 24579
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
|||+||++||.|+++.+..+....+++.+..++||.....+...+. .+++|+|+||++|++++.... ..++++++|
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~-~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~l 153 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGT---LDLSKLSGL 153 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc-CCCCEEEECHHHHHHHHHcCC---cchhhceEE
Confidence 9999999999999999999988877899999999988776666554 458999999999999998752 568899999
Q ss_pred EEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 518 (747)
||||||+|++++|...+..++..++..+|+++||||+|..+..+...++..+.. +.+.. .......+.+.++.....
T Consensus 154 VlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~-i~i~~--~~~~~~~i~q~~~~v~~~ 230 (629)
T PRK11634 154 VLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQE-VRIQS--SVTTRPDISQSYWTVWGM 230 (629)
T ss_pred EeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeE-EEccC--ccccCCceEEEEEEechh
Confidence 999999999999999999999999999999999999999999999888875433 32221 122334566777776666
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 519 ~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
.+...|..++... ...++||||+|+..+..++..|...++.+..+||.|++.+|.++++.|++|+.+|||||++++
T Consensus 231 ~k~~~L~~~L~~~----~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~a 306 (629)
T PRK11634 231 RKNEALVRFLEAE----DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 (629)
T ss_pred hHHHHHHHHHHhc----CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHh
Confidence 6777776666432 345899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 599 RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 599 ~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
+|||+|+|++||+||+|.++.+|+||+|||||.|+.|.|++|+.+.|..++..+++.
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888763
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-58 Score=452.52 Aligned_cols=360 Identities=32% Similarity=0.516 Sum_probs=322.9
Q ss_pred CCCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004518 275 FMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRP 354 (747)
Q Consensus 275 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 354 (747)
.....+|++.+|+.++++++...||++|+.+|+.+++.|++|+|||++|..|+|||.+|.+.+++.+--+ ..
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~--------~r 94 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS--------VR 94 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------cc
Confidence 3456789999999999999999999999999999999999999999999999999999988888765322 22
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCC
Q 004518 355 PILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 355 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
..++||+.|||+||.|+.+.+..++.+. ++.+..++||.+...+.+.+. .+.+++.+|||++++++.... ..-+.
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld-~G~hvVsGtPGrv~dmikr~~---L~tr~ 169 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLD-YGQHVVSGTPGRVLDMIKRRS---LRTRA 169 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhc-ccceEeeCCCchHHHHHHhcc---ccccc
Confidence 3569999999999999999999998876 899999999999998888776 568999999999999998763 45678
Q ss_pred ccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEe
Q 004518 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 514 (747)
+.++|+||||.|++.+|..++-.+...+|+..|++++|||+|.++.+....++..|..++.. ....+.+.++|+++.
T Consensus 170 vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk---rdeltlEgIKqf~v~ 246 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK---RDELTLEGIKQFFVA 246 (400)
T ss_pred eeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe---cCCCchhhhhhheee
Confidence 99999999999999999999999999999999999999999999999999999866655533 224556678999987
Q ss_pred cCccc-chHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEe
Q 004518 515 APLDL-HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593 (747)
Q Consensus 515 ~~~~~-k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLva 593 (747)
+..+. |+..|..+....- -..++|||+|+..+.+|.+.++..++.+..+||+|++++|..++..|+.|..+||++
T Consensus 247 ve~EewKfdtLcdLYd~Lt----ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 247 VEKEEWKFDTLCDLYDTLT----ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred echhhhhHhHHHHHhhhhe----hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 76554 9998887765432 237899999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh
Q 004518 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 594 T~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~ 654 (747)
||+.+||+|+|.|.+|||||+|.+.+.|+||+||.||.|+.|.++.|+...|...+..+++
T Consensus 323 TDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQ 383 (400)
T ss_pred echhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888887776
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-57 Score=505.13 Aligned_cols=368 Identities=31% Similarity=0.496 Sum_probs=314.6
Q ss_pred CCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 355 (747)
....+|++++|++.++++|..+||..|||+|+++||.+++|+|+|++||||||||++|++|+++.++...... .....+
T Consensus 5 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~-~~~~~~ 83 (423)
T PRK04837 5 LTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE-DRKVNQ 83 (423)
T ss_pred CCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc-ccccCC
Confidence 3457899999999999999999999999999999999999999999999999999999999999987654321 111235
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCc
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435 (747)
Q Consensus 356 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i 435 (747)
+++|||+|||+||.|+++.+..+.... ++.+..++||.....+...+ ..+++|+|+||++|++++.+. ...+.++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~~---~~~l~~v 158 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVL-ESGVDILIGTTGRLIDYAKQN---HINLGAI 158 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEECHHHHHHHHHcC---Ccccccc
Confidence 789999999999999999999988765 78899999998877665555 456899999999999999765 2568899
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCC--CCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEE
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~--~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 513 (747)
++|||||||+|++++|...+..++..++. .+++++||||++..+..+....+..+ .++.+... ......+.+...
T Consensus 159 ~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p-~~i~v~~~--~~~~~~i~~~~~ 235 (423)
T PRK04837 159 QVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNP-EYVEVEPE--QKTGHRIKEELF 235 (423)
T ss_pred cEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCC-EEEEEcCC--CcCCCceeEEEE
Confidence 99999999999999999999999999884 57889999999999998888777644 33333221 222334555555
Q ss_pred ecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEe
Q 004518 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593 (747)
Q Consensus 514 ~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLva 593 (747)
......+...+..++.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 236 ~~~~~~k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 311 (423)
T PRK04837 236 YPSNEEKMRLLQTLIEE----EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA 311 (423)
T ss_pred eCCHHHHHHHHHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEE
Confidence 55556666666666654 23468999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCC
Q 004518 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLP 656 (747)
Q Consensus 594 T~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~ 656 (747)
|++++||||+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.|...+..+++..
T Consensus 312 Tdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~ 374 (423)
T PRK04837 312 TDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 374 (423)
T ss_pred echhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888888887643
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.7e-56 Score=505.90 Aligned_cols=358 Identities=36% Similarity=0.539 Sum_probs=316.0
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
..+|.+++|++.+++++..+||..|||+|++++|.+++++|+|++||||||||++|++|+++.+.... ..++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~ 74 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQ 74 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCce
Confidence 35799999999999999999999999999999999999999999999999999999999999874322 2456
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
+||++||++||.|+++.++.++...+++.+..++||.+...+...+. .+++|+|+||++|.+++.+.. ..+.++++
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~-~~~~IvV~Tp~rl~~~l~~~~---~~l~~l~~ 150 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE-HGAHIIVGTPGRILDHLRKGT---LDLDALNT 150 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc-CCCCEEEEChHHHHHHHHcCC---ccHHHCCE
Confidence 99999999999999999999987777889999999998877666664 568999999999999998652 45789999
Q ss_pred EEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc
Q 004518 438 LVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 438 vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
|||||||+|++++|...+..++..++..+|+++||||+++.+..+...++..+..+ ..... .....+.+.++..+.
T Consensus 151 lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i-~~~~~---~~~~~i~~~~~~~~~ 226 (460)
T PRK11776 151 LVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEV-KVEST---HDLPAIEQRFYEVSP 226 (460)
T ss_pred EEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEE-EECcC---CCCCCeeEEEEEeCc
Confidence 99999999999999999999999999999999999999999999998888754433 22221 123346777777777
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~ 597 (747)
..+...+..++... .+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++
T Consensus 227 ~~k~~~l~~ll~~~----~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 227 DERLPALQRLLLHH----QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred HHHHHHHHHHHHhc----CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 77777777776543 34589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 598 ARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 598 ~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.|...+..+++.
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~ 360 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDY 360 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887777653
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.5e-56 Score=500.64 Aligned_cols=362 Identities=35% Similarity=0.556 Sum_probs=310.9
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE
Q 004518 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVL 359 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vL 359 (747)
+|++++|++.++++|.++||..||++|.++||.+++++|+|++||||||||++|++|+++.+...... .....++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEE
Confidence 58899999999999999999999999999999999999999999999999999999999998654321 1122346799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEE
Q 004518 360 VICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLV 439 (747)
Q Consensus 360 Il~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vI 439 (747)
||+||++||.|+.+.+..+.... ++.+..++||.....+...+. +.++|+|+||++|++++.... ..++++++||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~TP~rL~~~~~~~~---~~l~~v~~lV 154 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLR-GGVDVLVATPGRLLDLEHQNA---VKLDQVEILV 154 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHc-CCCcEEEEChHHHHHHHHcCC---cccccceEEE
Confidence 99999999999999999988765 678888999988776655554 568999999999999887652 4578999999
Q ss_pred EeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCccc
Q 004518 440 LDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL 519 (747)
Q Consensus 440 iDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 519 (747)
|||||+|++++|...+..++..++..+|+++||||++.++..+...++.++..+. +... ......+.+.+.......
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~-~~~~--~~~~~~i~~~~~~~~~~~ 231 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIE-VARR--NTASEQVTQHVHFVDKKR 231 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEE-Eecc--cccccceeEEEEEcCHHH
Confidence 9999999999999999999999999999999999999999988888876544332 2111 122335556666666555
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCccc
Q 004518 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSAR 599 (747)
Q Consensus 520 k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~ 599 (747)
+..++..++. .....++||||+++..++.++..|...++.+..+||+|++.+|.++++.|++|+++|||||+++++
T Consensus 232 k~~~l~~l~~----~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~r 307 (456)
T PRK10590 232 KRELLSQMIG----KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 (456)
T ss_pred HHHHHHHHHH----cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhc
Confidence 5555555443 234458999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 600 GVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 600 GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
|||+|+|++||+|++|.++.+|+||+|||||.|..|.|++|+...|...++.+++.
T Consensus 308 GiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred CCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888887763
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.4e-56 Score=508.53 Aligned_cols=365 Identities=32% Similarity=0.490 Sum_probs=312.6
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 279 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
.+|++++|++.++++|.++||..|||+|.++||.+++++|+|++||||||||++|++|+++.+++.... .......+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~-~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL-ADRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-cccccCCceE
Confidence 469999999999999999999999999999999999999999999999999999999999998754321 1111224679
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
|||+||++||.|+++.+..++... ++.+..++|+.....+...+ ..+++|||+||++|++++.+... +.+..+++|
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~~--~~l~~v~~l 163 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHKV--VSLHACEIC 163 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhccc--cchhheeee
Confidence 999999999999999999987765 78899999998877655544 45689999999999999876432 357789999
Q ss_pred EEeCCccccCCCcHHHHHHHHHHCCC--CCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~~~~--~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
||||||+|++++|...+..++..++. .+|+++||||++..+..+...++..+..+..... ......+.+.++...
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~---~~~~~~i~q~~~~~~ 240 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE---TITAARVRQRIYFPA 240 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc---cccccceeEEEEecC
Confidence 99999999999999999999999987 7899999999999999988888865544332111 123345566666666
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
...+...+..++.. ....++||||+++..++.+++.|...++.+..+||.|++.+|.++++.|++|+.+|||||++
T Consensus 241 ~~~k~~~L~~ll~~----~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv 316 (572)
T PRK04537 241 DEEKQTLLLGLLSR----SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (572)
T ss_pred HHHHHHHHHHHHhc----ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh
Confidence 66666666555543 34568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
+++|||+|+|++||+||+|.++.+|+||+|||||.|..|.|++|+++.+...+..+++.
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888764
No 18
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-58 Score=456.03 Aligned_cols=358 Identities=34% Similarity=0.529 Sum_probs=325.8
Q ss_pred CCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 355 (747)
..-..|+++.|.+.++..+..+||+.|+|+|.++||.++.|+|+++.|..|+|||.+|++|+|+.+- .....
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid--------~~~~~ 153 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID--------PKKNV 153 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC--------ccccc
Confidence 3457799999999999999999999999999999999999999999999999999999999999873 23345
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCc
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435 (747)
Q Consensus 356 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i 435 (747)
.+++|++|||+||.|+.+.+.+++++. ++.+.+.+||++...++-++. ...+++|+|||++++++.++ ...++++
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~-~~VH~~vgTPGRIlDL~~Kg---Va~ls~c 228 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLN-QTVHLVVGTPGRILDLAKKG---VADLSDC 228 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeec-CceEEEEcCChhHHHHHhcc---cccchhc
Confidence 679999999999999999999999987 799999999999988877774 45899999999999999887 3568899
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
.++|+||||.|++..|...++.++..+|+.+|++++|||.|-.+..+...++++|..+ +.. ...+...+.|+|..+
T Consensus 229 ~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~I-NLM---~eLtl~GvtQyYafV 304 (459)
T KOG0326|consen 229 VILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEI-NLM---EELTLKGVTQYYAFV 304 (459)
T ss_pred eEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCccee-ehh---hhhhhcchhhheeee
Confidence 9999999999999999999999999999999999999999999999999999876543 332 245556788999988
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
....|...|..++.... -...||||+|...++.+++.+.+.|+++..+|+.|.|+.|.++|..|++|.++.|||||
T Consensus 305 ~e~qKvhCLntLfskLq----INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 305 EERQKVHCLNTLFSKLQ----INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred chhhhhhhHHHHHHHhc----ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 88888887777766542 23789999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh
Q 004518 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~ 654 (747)
.+.||||+++|++|||||+|.+.++|+||+||+||.|..|.++.|++..|...+.+|+.
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888875
No 19
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-57 Score=481.97 Aligned_cols=369 Identities=30% Similarity=0.471 Sum_probs=307.8
Q ss_pred CCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCC-CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCC-----C
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG-KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVD-----R 349 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~-~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~-----~ 349 (747)
.....|.+|+++..++++|..+||..||+||..++|++..+ .|++..|.||||||++|-+|+++.+.+..... .
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34566889999999999999999999999999999999999 89999999999999999999999776554211 1
Q ss_pred CCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccccc
Q 004518 350 DQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFA 429 (747)
Q Consensus 350 ~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~ 429 (747)
....+.+.+||++|||+||.|+.+.+..++.+ +++.+..++||.....+++-+.. .++|+|||||+|+.++..+..+.
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhh
Confidence 22233445999999999999999999998875 59999999999998887666655 68999999999999999887766
Q ss_pred ccCCCccEEEEeCCccccCCCcHHHHHHHHHHCC-----CCCeEEEEeccCChH---------------------HHHHH
Q 004518 430 TRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVP-----KQRQTLLFSATVPEE---------------------VRQIC 483 (747)
Q Consensus 430 ~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~-----~~~q~il~SATl~~~---------------------v~~l~ 483 (747)
.++++++++||||||+|+..|+...+..|+.++. .++|+++||||++-. +..++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 7889999999999999999999999999988876 468999999998522 11222
Q ss_pred H-HHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccc
Q 004518 484 H-IALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKL 562 (747)
Q Consensus 484 ~-~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~ 562 (747)
. ..+...+.++..... ..+...+....+.|+...|--+|+.+|..+ ++++|||||++..+.+|+-+|+.+++
T Consensus 416 k~ig~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-----PGrTlVF~NsId~vKRLt~~L~~L~i 488 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTRY-----PGRTLVFCNSIDCVKRLTVLLNNLDI 488 (731)
T ss_pred HHhCccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEeec-----CCceEEEechHHHHHHHHHHHhhcCC
Confidence 2 223334455543221 222333333445566666666666555433 67999999999999999999999999
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeC
Q 004518 563 NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 563 ~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
..++||+.|.|++|.+.+++|.+....||||||||+||||||+|.|||||.+|.+.+-|+||.|||+|++..|..++|+.
T Consensus 489 ~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~ 568 (731)
T KOG0347|consen 489 PPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCG 568 (731)
T ss_pred CCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhh
Q 004518 643 PWEEFFLSTIK 653 (747)
Q Consensus 643 ~~e~~~l~~l~ 653 (747)
|.+...+.+|-
T Consensus 569 P~e~~~~~KL~ 579 (731)
T KOG0347|consen 569 PQEVGPLKKLC 579 (731)
T ss_pred hHHhHHHHHHH
Confidence 99977666553
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-56 Score=476.08 Aligned_cols=359 Identities=36% Similarity=0.545 Sum_probs=314.9
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCC--CeE
Q 004518 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRP--PIL 357 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~--~~~ 357 (747)
.|.+..+.+.+...++..++..|||+|+.+||.+..|+++++||+||||||.+|++|++..+++.+...+..... .+.
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 788888899999999999999999999999999999999999999999999999999999999987765554444 488
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
+||++|||+||.|++++++++.-. ..+.+...+||.+...+...+. .+|+|+|||||+|.++++.+ .+.|.++.+
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~~-~gcdIlvaTpGrL~d~~e~g---~i~l~~~k~ 229 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFIK-RGCDILVATPGRLKDLIERG---KISLDNCKF 229 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhccc-ccceeeeeeCCcchhhhhhhhc-cCccEEEecCchhhhhhhcc---eeehhhCcE
Confidence 999999999999999999988644 4788899999988777666664 55999999999999999887 377899999
Q ss_pred EEEeCCccccC-CCcHHHHHHHHHHCCC----CCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEE
Q 004518 438 LVLDEADHLLD-MGFRKDIEKIIAAVPK----QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMH 512 (747)
Q Consensus 438 vIiDEAh~ll~-~~f~~~l~~il~~~~~----~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 512 (747)
+||||||+|+| ++|...+.+|+..... .+|+++||||.|.++..++..++.....++.+. .......++.|..
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i 307 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKI 307 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEe
Confidence 99999999999 9999999999988754 789999999999999998888887554444432 2344556777888
Q ss_pred EecCcccchHHHHHHHHHHhhcCCCC-----eEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCC
Q 004518 513 LVAPLDLHFPLLYVLLREHVADNPEY-----KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587 (747)
Q Consensus 513 ~~~~~~~k~~~l~~~l~~~~~~~~~~-----k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~ 587 (747)
..+....+...|..++.........+ +++|||.+++.+..++.+|...++++..+||..++.+|.+.+..|++|+
T Consensus 308 ~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~ 387 (482)
T KOG0335|consen 308 LFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK 387 (482)
T ss_pred eeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC
Confidence 87777777777777777543221222 8999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcch
Q 004518 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWE 645 (747)
Q Consensus 588 ~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e 645 (747)
..|||||++++||||||+|++||+||+|.+..+|+||+|||||.|+.|.++.|+...+
T Consensus 388 ~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~ 445 (482)
T KOG0335|consen 388 APVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKN 445 (482)
T ss_pred cceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999997433
No 21
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-56 Score=455.34 Aligned_cols=361 Identities=32% Similarity=0.485 Sum_probs=314.2
Q ss_pred CcCCcCC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 004518 277 SESRFDQ-CSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355 (747)
Q Consensus 277 ~~~~f~~-l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 355 (747)
+..+|++ +...+.+++.+++.||.+|||+|.++||.+++|+|++..|.||+|||++|++|.+-++..+.... ..+.+
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~--~qr~~ 294 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR--EQRNG 294 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh--hccCC
Confidence 3455654 46789999999999999999999999999999999999999999999999999988876554322 24567
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCc
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435 (747)
Q Consensus 356 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i 435 (747)
+.+|+++|||+||.|+.-.+.++. + .++...+++||.+...+...+.. +.+|+++||++|.++...+ ..+|.++
T Consensus 295 p~~lvl~ptreLalqie~e~~kys-y-ng~ksvc~ygggnR~eqie~lkr-gveiiiatPgrlndL~~~n---~i~l~si 368 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS-Y-NGLKSVCVYGGGNRNEQIEDLKR-GVEIIIATPGRLNDLQMDN---VINLASI 368 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh-h-cCcceEEEecCCCchhHHHHHhc-CceEEeeCCchHhhhhhcC---eeeeeee
Confidence 789999999999999988777663 2 37888899999998888888765 5899999999999998876 4779999
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
.+||+||||+|++|+|...+.+|+-.+.+++|+++.|||+|+.+..++..+++.+..+.. ..-.......++|..++.
T Consensus 369 TYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v--GsLdL~a~~sVkQ~i~v~ 446 (629)
T KOG0336|consen 369 TYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV--GSLDLVAVKSVKQNIIVT 446 (629)
T ss_pred EEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe--cccceeeeeeeeeeEEec
Confidence 999999999999999999999999999999999999999999999999999986654432 222233445778888777
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
....++..+..++... .+..++||||..+..++.|..-|.-.|+....|||+-.|.+|..+++.|++|.++||||||
T Consensus 447 ~d~~k~~~~~~f~~~m---s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTD 523 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANM---SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATD 523 (629)
T ss_pred ccHHHHHHHHHHHHhc---CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEec
Confidence 7777777666665544 3456999999999999999999998899999999999999999999999999999999999
Q ss_pred CcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHH
Q 004518 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLS 650 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~ 650 (747)
+++||||+|+|+||+|||+|.+++.|+||+||+||+|+.|.++.|++..|....+
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~ 578 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAE 578 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHH
Confidence 9999999999999999999999999999999999999999999999988865443
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-54 Score=494.54 Aligned_cols=366 Identities=29% Similarity=0.446 Sum_probs=307.8
Q ss_pred CCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 355 (747)
.+...|+++++++.+++.|...||..|||+|.++||.++.|+|+|++||||||||++|++|++.++....... .....+
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~-~~~~~~ 196 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH-PSEQRN 196 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc-ccccCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999886432211 112246
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCc
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435 (747)
Q Consensus 356 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i 435 (747)
+++|||+|||+||.|+.+.+..+.... ++.+..++||.....+...+. .+++|+|+||++|.+++.+. ...++++
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~-~~~~IiV~TPgrL~~~l~~~---~~~l~~v 271 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQ-QGVELIVGTPGRLIDLLSKH---DIELDNV 271 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhc-CCCCEEEECHHHHHHHHHcC---Cccchhe
Confidence 789999999999999999999887655 577888899988777666664 45899999999999999865 3568899
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
.+|||||||+|++++|...+..++..++ .+|+++||||++..+..+...++.++ ..+..... ......+.+.....
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~-~~i~~~~~--~~~~~~v~q~~~~~ 347 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDI-ILISIGNP--NRPNKAVKQLAIWV 347 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCC-EEEEeCCC--CCCCcceeEEEEec
Confidence 9999999999999999999999998885 68999999999999998888877643 33332211 22233456666666
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHh-ccccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGE-LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~-~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
....+...+..++..... ...++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 348 ~~~~k~~~l~~~l~~~~~--~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT 425 (518)
T PLN00206 348 ETKQKKQKLFDILKSKQH--FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425 (518)
T ss_pred cchhHHHHHHHHHHhhcc--cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 666666666666654321 224899999999999999999975 58999999999999999999999999999999999
Q ss_pred CCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhh
Q 004518 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~ 653 (747)
++++||||+|+|++||+||+|.++.+|+||+|||||.|..|.+++|+++.+...+..+.
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988766555443
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-55 Score=451.63 Aligned_cols=366 Identities=28% Similarity=0.468 Sum_probs=317.9
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
..+|++++|++.+++++.+.|+++||-+|+.+||.++.|+|++..|.||||||.+|++|+++.+++.+... .+..++.
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~s 95 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPS 95 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccce
Confidence 47899999999999999999999999999999999999999999999999999999999999999876543 3345778
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCC-CceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCcc
Q 004518 358 VLVICPTRELATQAATEASTLLKYHP-SIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~ 436 (747)
++|++||||||+|++.++.++..+++ .+.+..+....+-.. ...+....++|+|+||++|+.++..+.. ..+..++
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv-~~~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~ 172 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV-NSVALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLS 172 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH-HHHHHccCCCeEEeChHHHHHHHhhccc--hhhhhee
Confidence 99999999999999999999987764 344433333333222 2344556689999999999999987642 4578899
Q ss_pred EEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC
Q 004518 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 437 ~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
++|+||||.++..||.+.+..+..++|+..|.++||||++.++..+-+.+|++|.. +.. .+........+.|+++.+.
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPvi-Lkl-~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVI-LKL-TEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeE-EEe-ccccCCCcccceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999987654 333 2333446678899999999
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
...|+.+++.+++-.+- .+++|||+|+.+.|.++.-+|.+.|++.++++|.|+..-|..++++|..|-.+||||||.
T Consensus 251 e~DKflllyallKL~LI---~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~ 327 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLI---RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDD 327 (569)
T ss_pred cchhHHHHHHHHHHHHh---cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccC
Confidence 99999999988876544 359999999999999999999999999999999999999999999999999999999991
Q ss_pred -----------------------------------cccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEe
Q 004518 597 -----------------------------------SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLL 641 (747)
Q Consensus 597 -----------------------------------~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~ 641 (747)
.+||||+..|..|||||+|.++.+|+||+|||+|++++|.++.|+
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEe
Confidence 248999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHhh
Q 004518 642 APWEEFFLSTIK 653 (747)
Q Consensus 642 s~~e~~~l~~l~ 653 (747)
+|.+..-...++
T Consensus 408 ~P~e~~g~~~le 419 (569)
T KOG0346|consen 408 SPKEEFGKESLE 419 (569)
T ss_pred cchHHhhhhHHH
Confidence 998876444333
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-53 Score=477.87 Aligned_cols=359 Identities=33% Similarity=0.526 Sum_probs=306.0
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE
Q 004518 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVL 359 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vL 359 (747)
+|+++++++.+++++..+||..|+++|.++++.+++++|++++||||+|||++|++|+++++...... ...++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEE
Confidence 58999999999999999999999999999999999999999999999999999999999998754221 12246799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEE
Q 004518 360 VICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLV 439 (747)
Q Consensus 360 Il~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vI 439 (747)
|++||++||.|+++.+..++... ++.+..++||.....+...+ .++++|+|+||++|++++.... +.+.++++||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lV 152 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKEEN---FDCRAVETLI 152 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHcCC---cCcccCCEEE
Confidence 99999999999999999998765 68899999998876654444 4568999999999999997652 4578999999
Q ss_pred EeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh-HHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC-c
Q 004518 440 LDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE-EVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP-L 517 (747)
Q Consensus 440 iDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~-~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~ 517 (747)
|||||+|++++|...+..+...++...|+++||||++. .+..+...++..+ ..+.... .......+.+.+.... .
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~-~~i~~~~--~~~~~~~i~~~~~~~~~~ 229 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDP-VEVEAEP--SRRERKKIHQWYYRADDL 229 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCC-EEEEecC--CcccccCceEEEEEeCCH
Confidence 99999999999999999999999999999999999985 4666776666543 3333221 1222334555555443 3
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~ 597 (747)
..+..++..++. .....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++
T Consensus 230 ~~k~~~l~~l~~----~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~ 305 (434)
T PRK11192 230 EHKTALLCHLLK----QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVA 305 (434)
T ss_pred HHHHHHHHHHHh----cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 445555555543 3345699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh
Q 004518 598 ARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 598 ~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~ 654 (747)
++|||+|+|++||+||+|.+...|+||+|||||.|..|.|++|+...|..++..+++
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888775
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-53 Score=481.10 Aligned_cols=366 Identities=35% Similarity=0.559 Sum_probs=312.2
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
...|.+++|++.+.++|.++||..||++|.++|+.+++|+|+|++++||||||++|++|+++.+.+...... .....++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCCce
Confidence 356889999999999999999999999999999999999999999999999999999999999876542211 1112467
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
+|||+||++||.|+++.+..+.... ++.+..++||.+...+...+..+.++|+|+||++|++++.... ..++++++
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~---~~l~~l~~ 240 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE---VHLDMVEV 240 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC---cccccCce
Confidence 9999999999999999999988765 6888889999888777777777778999999999999887653 55789999
Q ss_pred EEEeCCccccCCCcHHHHHHHHHHCCC--CCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec
Q 004518 438 LVLDEADHLLDMGFRKDIEKIIAAVPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 438 vIiDEAh~ll~~~f~~~l~~il~~~~~--~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
|||||||++++++|...+..++..++. .+|++++|||++..+..+...++..+. .+..... ......+.+.....
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~~~~~~~~ 317 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPE--NVASDTVEQHVYAV 317 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccC--cCCCCcccEEEEEe
Confidence 999999999999999999999998864 579999999999999888888776543 3322211 11222344555555
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
....+...+..++.. ....++||||+++..++.++..|...++.+..+||++++.+|.++++.|++|++.|||||+
T Consensus 318 ~~~~k~~~l~~ll~~----~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~ 393 (475)
T PRK01297 318 AGSDKYKLLYNLVTQ----NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 393 (475)
T ss_pred cchhHHHHHHHHHHh----cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 555666666666543 3345899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
++++|||||+|++||+|++|.++.+|+||+|||||.|+.|.+++|++..|..++..++.+
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~ 453 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEEL 453 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888888764
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.4e-55 Score=446.05 Aligned_cols=368 Identities=32% Similarity=0.471 Sum_probs=312.6
Q ss_pred CCCCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCC
Q 004518 274 SFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR 353 (747)
Q Consensus 274 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 353 (747)
.+++..+|.+..+...+++.|++.|+..|||+|.+.+|.++.|+|+|-.|-||||||++|.+|++.+.++.....+-...
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 34567889999999999999999999999999999999999999999999999999999999999888876654444455
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhh-----hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccc
Q 004518 354 PPILVLVICPTRELATQAATEASTLLK-----YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGF 428 (747)
Q Consensus 354 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~-----~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~ 428 (747)
.++..|||||+|+||.|+++.+..++. .+|.++..+++||.....+..... .+.+|+|+|||+|.++|.++.
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~-~GvHivVATPGRL~DmL~KK~-- 321 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR-RGVHIVVATPGRLMDMLAKKI-- 321 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh-cCeeEEEcCcchHHHHHHHhh--
Confidence 678899999999999999999888764 356788899999999988777665 458999999999999998763
Q ss_pred cccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccce
Q 004518 429 ATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQV 508 (747)
Q Consensus 429 ~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i 508 (747)
..|.-++++++||||+|+++||...+..|+.++..++|+++||||+|..+..+++..+..|.. +++-... ....++
T Consensus 322 -~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvt-vNVGRAG--AAsldV 397 (610)
T KOG0341|consen 322 -MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVT-VNVGRAG--AASLDV 397 (610)
T ss_pred -ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceE-Eeccccc--ccchhH
Confidence 567778999999999999999999999999999999999999999999999999988875443 3332211 111122
Q ss_pred eEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCc
Q 004518 509 RQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588 (747)
Q Consensus 509 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~ 588 (747)
.|..-.+..+.|..+|.+-+.+. .-++||||..+.+++.++.||--.|+.+..|||+-+|++|...++.|+.|+.
T Consensus 398 iQevEyVkqEaKiVylLeCLQKT-----~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK 472 (610)
T KOG0341|consen 398 IQEVEYVKQEAKIVYLLECLQKT-----SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK 472 (610)
T ss_pred HHHHHHHHhhhhhhhHHHHhccC-----CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC
Confidence 22222334455655555554432 3399999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcc-hHHHHHHhh
Q 004518 589 LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW-EEFFLSTIK 653 (747)
Q Consensus 589 ~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~-e~~~l~~l~ 653 (747)
.||||||+|+.|+|+|++.+|||||.|..++.|+||+|||||.|+.|.+..|+.+. +...+-.++
T Consensus 473 DVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK 538 (610)
T KOG0341|consen 473 DVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLK 538 (610)
T ss_pred ceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999863 445554444
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-53 Score=444.45 Aligned_cols=364 Identities=33% Similarity=0.484 Sum_probs=323.4
Q ss_pred CCCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004518 275 FMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRP 354 (747)
Q Consensus 275 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 354 (747)
.-+..+|+.++++..|..++.+..|.+|||+|.+++|..+.+++|+-.|.||||||.+|+.|++-+++..+... ...
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~---~g~ 295 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK---PGE 295 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc---CCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999998776433 234
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCC
Q 004518 355 PILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 355 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
+|..||++|||+||.|++.+++++++.+ ++.+.+++||..+..+...+. .++.|||||||+|++++..+ ..++.+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~VkmK---atn~~r 370 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKMK---ATNLSR 370 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHhh---ccccee
Confidence 7889999999999999999999999887 899999999999998888887 66999999999999999766 367899
Q ss_pred ccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEe
Q 004518 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 514 (747)
+++|||||||+|.++||...+..|..++.+++|+|+||||++..+..+++.++..+..++.. ........+.|...+
T Consensus 371 vS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg---~vgean~dITQ~V~V 447 (731)
T KOG0339|consen 371 VSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG---EVGEANEDITQTVSV 447 (731)
T ss_pred eeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe---ehhccccchhheeee
Confidence 99999999999999999999999999999999999999999999999999999866655443 223344456666555
Q ss_pred c-CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEe
Q 004518 515 A-PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593 (747)
Q Consensus 515 ~-~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLva 593 (747)
+ ....|...|..-|... ...+++|||++-...++.+++.|+-.+++|..+||.|.|.+|.+++..|++++..|||+
T Consensus 448 ~~s~~~Kl~wl~~~L~~f---~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlva 524 (731)
T KOG0339|consen 448 CPSEEKKLNWLLRHLVEF---SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVA 524 (731)
T ss_pred ccCcHHHHHHHHHHhhhh---ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEE
Confidence 5 4455666665544443 34579999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHh
Q 004518 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 594 T~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l 652 (747)
||+++||+|||.++.||+||+-.+++.|.||+||+||+|..|.+|.|+++.|..|.-.|
T Consensus 525 tDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 525 TDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred eeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999997765443
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-50 Score=451.14 Aligned_cols=357 Identities=29% Similarity=0.499 Sum_probs=301.1
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
..+|+++++++.+.+++.+.||..|+|+|.++++.+++++|++++||||||||++|++|+++.+... ..+.+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--------LNACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--------CCCce
Confidence 4679999999999999999999999999999999999999999999999999999999999886321 12456
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
+||++||++||.|+.+.+..++... .+.+..+.|+.....+...+. .+++|+|+||++|.+.+.... ..++++++
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~l 173 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLK-AGVHMVVGTPGRVYDMIDKRH---LRVDDLKL 173 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHc-CCCCEEEECcHHHHHHHHhCC---cccccccE
Confidence 9999999999999999998887654 567777888887666555554 447999999999999887652 45789999
Q ss_pred EEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc
Q 004518 438 LVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 438 vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
|||||||++++++|...+..++..+++..|++++|||++..+..+...++..+..+... . .......+.+++.....
T Consensus 174 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 250 (401)
T PTZ00424 174 FILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVK-K--DELTLEGIRQFYVAVEK 250 (401)
T ss_pred EEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeC-C--CCcccCCceEEEEecCh
Confidence 99999999999999999999999999999999999999999888888777654333211 1 11223345555554432
Q ss_pred -ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 518 -DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 518 -~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
+.+...+..++ ......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 251 ~~~~~~~l~~~~----~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~ 326 (401)
T PTZ00424 251 EEWKFDTLCDLY----ETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDL 326 (401)
T ss_pred HHHHHHHHHHHH----HhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccc
Confidence 22333343333 2233458999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~ 654 (747)
+++|||+|+|++||+||+|.+...|+||+|||||.|+.|.|++|+++.+...+..+++
T Consensus 327 l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 327 LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888877765
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-51 Score=417.39 Aligned_cols=364 Identities=29% Similarity=0.453 Sum_probs=310.8
Q ss_pred CCCCCCCCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCC
Q 004518 270 GKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPV 347 (747)
Q Consensus 270 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~ 347 (747)
.+++++++..+|++|.|+|++++++..|+|.+|+.+|..++|.++.+ +++|.++..|+|||.||.+.+|.++--
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~---- 156 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP---- 156 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc----
Confidence 36778899999999999999999999999999999999999999987 899999999999999999999887632
Q ss_pred CCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccc
Q 004518 348 DRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAG 427 (747)
Q Consensus 348 ~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~ 427 (747)
...-|.+++|+|||+||.|+.+++.+.+++. ++...+.+-+..... -..+ ..+|+|+|||.+++++..-+
T Consensus 157 ----~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r-G~~i---~eqIviGTPGtv~Dlm~klk- 226 (477)
T KOG0332|consen 157 ----DVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR-GNKL---TEQIVIGTPGTVLDLMLKLK- 226 (477)
T ss_pred ----cccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc-CCcc---hhheeeCCCccHHHHHHHHH-
Confidence 2234568999999999999999999999987 788777776652211 0011 15899999999999998622
Q ss_pred ccccCCCccEEEEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCcccccc
Q 004518 428 FATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHE 506 (747)
Q Consensus 428 ~~~~L~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~ 506 (747)
...+..+.++|+||||.|++ .||...-..|...+|++.|+++||||....+..++.....++..++.. .......
T Consensus 227 -~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk---~eel~L~ 302 (477)
T KOG0332|consen 227 -CIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK---REELALD 302 (477)
T ss_pred -hhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee---hhhcccc
Confidence 25578999999999999986 569999999999999999999999999999999999988876655432 2244556
Q ss_pred ceeEEEEecC-cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhc
Q 004518 507 QVRQMHLVAP-LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK 585 (747)
Q Consensus 507 ~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~ 585 (747)
.++|+++.|. .+.|+..|..+..-. .-+..||||.|+..+.+++..|...|..|..+||.|...+|..++.+|+.
T Consensus 303 ~IkQlyv~C~~~~~K~~~l~~lyg~~----tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~ 378 (477)
T KOG0332|consen 303 NIKQLYVLCACRDDKYQALVNLYGLL----TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE 378 (477)
T ss_pred chhhheeeccchhhHHHHHHHHHhhh----hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc
Confidence 8889998775 566777777643221 23588999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeeCCcccccCCCCccEEEEeCCCC------ChhhHHHhhccCCCCCCcceEEEEeCc-chHHHHHHhhhC
Q 004518 586 SKGLILVTSDVSARGVDYPDVTLVIQVGLPS------DREQYIHRLGRTGRKGKEGQGILLLAP-WEEFFLSTIKDL 655 (747)
Q Consensus 586 g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~------s~~~y~Qr~GRagR~G~~G~~~~l~s~-~e~~~l~~l~~~ 655 (747)
|..+|||+|+|++||||++.|++|||||+|. +++.|+||+|||||.|+.|.++.|+.. +....++.|+++
T Consensus 379 g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 379 GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKH 455 (477)
T ss_pred CcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHH
Confidence 9999999999999999999999999999995 789999999999999999999999875 446777788774
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-51 Score=462.08 Aligned_cols=377 Identities=33% Similarity=0.548 Sum_probs=333.4
Q ss_pred CCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 355 (747)
.+.++|.+.+++..++..++++||.++++||.+|||+|+.|+|||..|.||||||++|++|++.++..++.... ..|
T Consensus 362 kpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~---gdG 438 (997)
T KOG0334|consen 362 KPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE---GDG 438 (997)
T ss_pred cccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhh---CCC
Confidence 34678999999999999999999999999999999999999999999999999999999999988876664322 237
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCc
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435 (747)
Q Consensus 356 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i 435 (747)
|.+||++|||+||.|+.+++..|+.. .++.+.+++||.....++..+..+ +.|+|||||++++.+....+-..+|..+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCcccccccc
Confidence 88999999999999999999999987 489999999999999988888777 8999999999999997665445666777
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
.++|+||||+|.+++|...+..|+.++++.+|+++||||+|..+..++...++.|..++. .........+.|.+.++
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv---~~~svV~k~V~q~v~V~ 593 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIV---GGRSVVCKEVTQVVRVC 593 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEE---ccceeEeccceEEEEEe
Confidence 799999999999999999999999999999999999999999999999999986655332 23344556777777777
Q ss_pred C-cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 516 P-LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 516 ~-~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
. .+.||..|..+|..... ..++||||..+..|..+...|.+.++.+..|||+.++.+|..+++.|++|.+.+||||
T Consensus 594 ~~e~eKf~kL~eLl~e~~e---~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT 670 (997)
T KOG0334|consen 594 AIENEKFLKLLELLGERYE---DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT 670 (997)
T ss_pred cCchHHHHHHHHHHHHHhh---cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh
Confidence 6 88899999999988754 5699999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh-CCCccCCCC
Q 004518 595 DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD-LPILKAPVP 663 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~-~~i~~~~~~ 663 (747)
++++||+|++.+.+||||+.|.-...|+||+|||||+|+.|.|++|+++.+..+...|-+ +.+.+.+++
T Consensus 671 svvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred hhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 999999999999999999999999999999999999999999999999966555544432 444455554
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-50 Score=420.35 Aligned_cols=354 Identities=30% Similarity=0.444 Sum_probs=290.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHC---------CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 288 ALSLKGIKDAGYEKMTIVQEATLPVLLK---------GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 288 ~~l~~~l~~~g~~~~t~iQ~~~i~~il~---------~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
..+...+.++++....|+|..++|+++. .+|++|.||||||||++|.+||++.+..... ...++
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-------~~LRa 218 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-------KRLRA 218 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc-------cceEE
Confidence 3344458899999999999999999853 4799999999999999999999999865432 34789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCC----cEEEECchhHHHHHHccccccccCCC
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPC----QILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~----~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
|||+||++|+.|+++.+..+.... ++.+..+.|..+...+..++..... ||+|+|||+|.+||.+.+.| .|++
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f--~Lk~ 295 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSF--DLKH 295 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCc--chhh
Confidence 999999999999999999997765 7888888898899888888877666 99999999999999976654 5889
Q ss_pred ccEEEEeCCccccCCCcHHHHHHHHHHCC----------------------------------CCCeEEEEeccCChHHH
Q 004518 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVP----------------------------------KQRQTLLFSATVPEEVR 480 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l~~il~~~~----------------------------------~~~q~il~SATl~~~v~ 480 (747)
++++||||||+|++..|..++-.+..++. +..+.+++|||+...-.
T Consensus 296 LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~ 375 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPS 375 (620)
T ss_pred ceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChH
Confidence 99999999999998776666555544432 12356889999876666
Q ss_pred HHHHHHhcCCceeeeecc-CCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHH-
Q 004518 481 QICHIALKRDHEFINTVE-EGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG- 558 (747)
Q Consensus 481 ~l~~~~~~~~~~~i~~~~-~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~- 558 (747)
.+....++.|..+..... .........+.+.++.+....+..+++.+|... .-.++|||+++...+.+++..|+
T Consensus 376 Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~----k~~r~lcf~~S~~sa~Rl~~~L~v 451 (620)
T KOG0350|consen 376 KLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN----KLNRTLCFVNSVSSANRLAHVLKV 451 (620)
T ss_pred HHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh----hcceEEEEecchHHHHHHHHHHHH
Confidence 666666665533332211 122334456667777787777877888887654 23599999999999999999887
Q ss_pred ---hccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcc
Q 004518 559 ---ELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEG 635 (747)
Q Consensus 559 ---~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G 635 (747)
..+.++-.+.|.++.+.|.+.+++|..|.+.||||||+++||||+.+|+.||+||+|.+..+|+||+|||+|+|+.|
T Consensus 452 ~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G 531 (620)
T KOG0350|consen 452 EFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG 531 (620)
T ss_pred HhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc
Confidence 33677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCcchH-HHHHHhhhC
Q 004518 636 QGILLLAPWEE-FFLSTIKDL 655 (747)
Q Consensus 636 ~~~~l~s~~e~-~~l~~l~~~ 655 (747)
.|+.++..++. .|.+.+++.
T Consensus 532 ~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 532 YAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred eEEEeeccccchHHHHHHHHh
Confidence 99999999885 555555553
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.7e-48 Score=454.19 Aligned_cols=348 Identities=20% Similarity=0.281 Sum_probs=267.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCc
Q 004518 285 SISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPT 364 (747)
Q Consensus 285 ~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Pt 364 (747)
.+++.+.++|.++|+..||++|.++|+.+++|+|+|+++|||||||++|++|+++.+.+. +++++|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcCh
Confidence 378999999999999999999999999999999999999999999999999999998643 24579999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHH-ccccccccCCCccEEEEeCC
Q 004518 365 RELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIE-NTAGFATRLMGVKVLVLDEA 443 (747)
Q Consensus 365 r~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~-~~~~~~~~L~~i~~vIiDEA 443 (747)
|+||.|+.+.++++. ..++.+..+.|++... +...+. .+++|+|+||++|...+. ....+...++++++||||||
T Consensus 91 raLa~q~~~~l~~l~--~~~i~v~~~~Gdt~~~-~r~~i~-~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 91 KALAADQLRAVRELT--LRGVRPATYDGDTPTE-ERRWAR-EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred HHHHHHHHHHHHHhc--cCCeEEEEEeCCCCHH-HHHHHh-cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 999999999999986 3367787777776633 333343 458999999999875432 22222334789999999999
Q ss_pred ccccCCCcHHHHHHHHH-------HCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC
Q 004518 444 DHLLDMGFRKDIEKIIA-------AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 444 h~ll~~~f~~~l~~il~-------~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
|.|.+. |..++..++. ..+.++|++++|||+++... ++..++..+..++ ....... ...++....+
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i--~~~~~~~---~~~~~~~~~p 239 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV--TEDGSPR---GARTVALWEP 239 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE--CCCCCCc---CceEEEEecC
Confidence 999763 6655554443 34567899999999988754 5556665443322 1111111 1111211111
Q ss_pred c-------------ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc--------cccceeccCCCCHHH
Q 004518 517 L-------------DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--------KLNVREIHSRKPQSY 575 (747)
Q Consensus 517 ~-------------~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--------~~~v~~lh~~l~~~e 575 (747)
. .........++...+.. +.++||||+|+..++.++..|+.. +..+..+||++++++
T Consensus 240 ~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 240 PLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred CccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 1 00011122233333222 459999999999999999988764 567899999999999
Q ss_pred HHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeC--cchHHHHHHhh
Q 004518 576 RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLA--PWEEFFLSTIK 653 (747)
Q Consensus 576 R~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s--~~e~~~l~~l~ 653 (747)
|.++++.|++|++++||||+++++|||||+|++||+||.|.+..+|+||+|||||.|+.|.++++.. +.|..++..++
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 56777776665
Q ss_pred h
Q 004518 654 D 654 (747)
Q Consensus 654 ~ 654 (747)
.
T Consensus 398 ~ 398 (742)
T TIGR03817 398 A 398 (742)
T ss_pred H
Confidence 4
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-49 Score=403.07 Aligned_cols=356 Identities=31% Similarity=0.506 Sum_probs=321.9
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 279 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
.+|++++|++.|++++...||++|+.+|+.||..+..|.|+++++.+|+|||.+|.+++++.+- .......+
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD--------~~~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID--------MSVKETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC--------cchHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999862 22234559
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
|+++|||+||.|+..+...++... ++++..++||.....+...+....++|+++|||++.+.+... .+....++++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmf 173 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMF 173 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEE
Confidence 999999999999999888887766 789999999999887777777777899999999999999766 2456789999
Q ss_pred EEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 518 (747)
|+||||.|+..+|.+.+..|+.++|++.|++++|||+|.++..+.+.++..+..+... ....+...++|+++....+
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk---k~~ltl~gikq~~i~v~k~ 250 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK---KDELTLEGIKQFYINVEKE 250 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec---chhhhhhheeeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999865544322 2235677889999988888
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 519 ~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
.|+..|+.+... ....+|||+|...+..+...|...++.+..+|+.|.+.+|..++..|+.|..+|||+|+.++
T Consensus 251 ~k~~~l~dl~~~------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~a 324 (397)
T KOG0327|consen 251 EKLDTLCDLYRR------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLA 324 (397)
T ss_pred ccccHHHHHHHh------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccc
Confidence 899999888772 23789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 599 RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 599 ~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
||||+..+..||+|++|.+.++|+||+||+||.|.+|.++.++...+..-+..++++
T Consensus 325 rgidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 325 RGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred cccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHh
Confidence 999999999999999999999999999999999999999999999999888888864
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-49 Score=408.16 Aligned_cols=360 Identities=29% Similarity=0.467 Sum_probs=319.5
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
...|+.++|+..+++++.+.||..|||+|+++||.++.+++++..+.||||||.||++|+++++.... .++.+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~R 92 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLR 92 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999986432 35678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
++|+.|||+||.|..+.+++++++. ++.+.+++||..+..+...+.. ++|||+||||+++.....- ...|+.+++
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~-npDii~ATpgr~~h~~vem---~l~l~svey 167 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNE-NPDIIIATPGRLLHLGVEM---TLTLSSVEY 167 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhcc-CCCEEEecCceeeeeehhe---eccccceee
Confidence 9999999999999999999998876 7888889999998887777654 5799999999997665443 356899999
Q ss_pred EEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc
Q 004518 438 LVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 438 vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
||+||||++..+||.+.+..++..+|..+|+++||||+|..+..+.+..+..|.. +... ........++..+..+..
T Consensus 168 VVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~l-VRld--vetkise~lk~~f~~~~~ 244 (529)
T KOG0337|consen 168 VVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVL-VRLD--VETKISELLKVRFFRVRK 244 (529)
T ss_pred eeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCce-EEee--hhhhcchhhhhheeeecc
Confidence 9999999999999999999999999999999999999999999999988875443 3321 112333345556677788
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~ 597 (747)
+.|..+|..++...+. +..++|||+|...++.+...|+..|+.+..++|.|++..|..-+..|..++..+||.|+++
T Consensus 245 a~K~aaLl~il~~~~~---~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdva 321 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK---DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVA 321 (529)
T ss_pred HHHHHHHHHHHhcccc---ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhh
Confidence 8888888888877654 3489999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhC
Q 004518 598 ARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 598 ~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~ 655 (747)
+||+|||..+.||+||.|.+..-|+||+||+.|+|+.|.+|.++.+.+..++-.|...
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998888777653
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.6e-47 Score=441.94 Aligned_cols=343 Identities=20% Similarity=0.254 Sum_probs=261.9
Q ss_pred CCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEE
Q 004518 283 QCSISALSLKGIKD-AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVI 361 (747)
Q Consensus 283 ~l~l~~~l~~~l~~-~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl 361 (747)
.++....+...++. +|+..++|+|.++|+.++.|+|+|+++|||+|||+||++|++.. ++.+|||
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~GiTLVI 506 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVI 506 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CCcEEEE
Confidence 46677777666665 69999999999999999999999999999999999999999853 1249999
Q ss_pred cCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHh---c--CCCcEEEECchhHHH--HHHccccccccCCC
Q 004518 362 CPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQ---A--NPCQILVATPGRLRD--HIENTAGFATRLMG 434 (747)
Q Consensus 362 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~---~--~~~~IlV~Tpg~Ll~--~l~~~~~~~~~L~~ 434 (747)
+|+++|+.++...+... ++.+..+.++.....+...+. . +.++|||+||++|.. .+............
T Consensus 507 SPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred eCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999998766655543 678888888887665443332 2 568999999999852 12211000011245
Q ss_pred ccEEEEeCCccccCCC--cHHHHHHH--HHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeE
Q 004518 435 VKVLVLDEADHLLDMG--FRKDIEKI--IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQ 510 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~--f~~~l~~i--l~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 510 (747)
+.+|||||||++++|| |+..+..+ +....+..++++||||+++.+...+...+......+..... ...++.
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf----~RpNL~- 656 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF----NRPNLW- 656 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc----CccceE-
Confidence 8899999999999998 77777654 44444578899999999999887665555432222211111 111221
Q ss_pred EEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccE
Q 004518 511 MHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLI 590 (747)
Q Consensus 511 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~V 590 (747)
+.+..........+..++... ......||||.++..++.++..|...|+.+..+||+|++.+|..+++.|..|+++|
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~---~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~V 733 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKEN---HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINI 733 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhc---ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcE
Confidence 112221111233344444322 22457899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHh
Q 004518 591 LVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 591 LvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l 652 (747)
||||+++++|||+|+|++||||++|.+++.|+||+|||||.|.+|.|++||+..|...+..+
T Consensus 734 LVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 734 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred EEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887655544
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.3e-48 Score=418.49 Aligned_cols=356 Identities=29% Similarity=0.451 Sum_probs=310.7
Q ss_pred CCCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004518 275 FMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRP 354 (747)
Q Consensus 275 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 354 (747)
......|+++-|...++..|+..+|..||++|..|||+++.+-|+||+|..|+|||++|.+.+++.+- ....
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~--------~~~~ 92 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD--------SRSS 92 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC--------cccC
Confidence 34567899999999999999999999999999999999999999999999999999999988888763 2334
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCC
Q 004518 355 PILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 355 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
.++++||+|||++|.|+.+.+..++..+.++.|.+++||+....+..++.. ++|+|+|||+|..+++.+ .++.++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~--~rIvIGtPGRi~qL~el~---~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ--TRIVIGTPGRIAQLVELG---AMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--ceEEecCchHHHHHHHhc---CCCccc
Confidence 567999999999999999999999988889999999999999888888765 799999999999999887 477899
Q ss_pred ccEEEEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEE
Q 004518 435 VKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513 (747)
Q Consensus 435 i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 513 (747)
++++|+||||.|++ ..|...+..|+..+|..+|++.||||.|..+.+++..++.. +.++.... .....-.++|+++
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrd-p~lVr~n~--~d~~L~GikQyv~ 244 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRD-PALVRFNA--DDVQLFGIKQYVV 244 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcc-cceeeccc--CCceeechhheee
Confidence 99999999999998 55999999999999999999999999999999999999974 44544322 2334446778776
Q ss_pred ecCcc-c---chHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCcc
Q 004518 514 VAPLD-L---HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGL 589 (747)
Q Consensus 514 ~~~~~-~---k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~ 589 (747)
..+.. . -+.+....|.+.+..-+-...||||+....|+.++++|...|+.|..|.|.|+|++|..++..++.-..+
T Consensus 245 ~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~r 324 (980)
T KOG4284|consen 245 AKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVR 324 (980)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEE
Confidence 54322 2 2333344444444444445889999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchH
Q 004518 590 ILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646 (747)
Q Consensus 590 VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~ 646 (747)
|||+||..+||||-+.|++|||.|.|.+..+|.||+|||||.|..|.++.|+...++
T Consensus 325 ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 325 ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999976443
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.1e-46 Score=419.09 Aligned_cols=330 Identities=20% Similarity=0.282 Sum_probs=251.9
Q ss_pred HCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 296 DAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 296 ~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
.+||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+||++|+.|++..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998742 124899999999999999888
Q ss_pred HHHhhhCCCceEEEEeCCcchHHH---HHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC--
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALE---QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG-- 450 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~-- 450 (747)
..+ ++.+..+.++...... ...+..+.++|+++||+++.........+ ..+.++++|||||||++++|+
T Consensus 72 ~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l-~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 72 KAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTL-EERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHH-HhcCCcCEEEEeCCcccCccccc
Confidence 764 5666666666554321 12344566899999999975322100000 135689999999999999987
Q ss_pred cHHHHHHH--HHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHH
Q 004518 451 FRKDIEKI--IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLL 528 (747)
Q Consensus 451 f~~~l~~i--l~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 528 (747)
|+..+..+ +....++.++++||||+++.+...+...+......+....... .++ .+.+..........+..++
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r----~nl-~~~v~~~~~~~~~~l~~~l 220 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR----PNL-YYEVRRKTPKILEDLLRFI 220 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC----CCc-EEEEEeCCccHHHHHHHHH
Confidence 66666554 2233357789999999999887655554432222221111111 111 1112112212333343443
Q ss_pred HHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccE
Q 004518 529 REHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTL 608 (747)
Q Consensus 529 ~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~ 608 (747)
.. ...+..+||||++++.++.++..|+..++.+..+||+|++.+|..+++.|.+|..+|||||+++++|||+|+|++
T Consensus 221 ~~---~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~ 297 (470)
T TIGR00614 221 RK---EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRF 297 (470)
T ss_pred HH---hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceE
Confidence 32 233446799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhh
Q 004518 609 VIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653 (747)
Q Consensus 609 VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~ 653 (747)
||+|++|.++..|+||+|||||.|.+|.|++|+++.|...+..+-
T Consensus 298 VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 298 VIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred EEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999999999999999999999987776653
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3e-44 Score=416.31 Aligned_cols=334 Identities=18% Similarity=0.287 Sum_probs=254.0
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcH
Q 004518 287 SALSLKGIKD-AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTR 365 (747)
Q Consensus 287 ~~~l~~~l~~-~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr 365 (747)
.....+.|++ +||..++|+|+++++.+++++|+++++|||+|||++|++|++.. ...+|||+|++
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~ 75 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLI 75 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHH
Confidence 3334444444 69999999999999999999999999999999999999998743 12389999999
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHH---HHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeC
Q 004518 366 ELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ---KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDE 442 (747)
Q Consensus 366 ~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDE 442 (747)
+|+.|+++.+..+ ++.+.++.++....... ..+..+..+|+|+||++|....... .....++++|||||
T Consensus 76 sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVIDE 147 (607)
T PRK11057 76 SLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVDE 147 (607)
T ss_pred HHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEeC
Confidence 9999999888765 56666666665543322 2344566899999999987321111 02235789999999
Q ss_pred CccccCCC--cHHHHHHH---HHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc
Q 004518 443 ADHLLDMG--FRKDIEKI---IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 443 Ah~ll~~~--f~~~l~~i---l~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
||++++|+ |+..+..+ ...+ +..++++||||++..+...+...+......+....... .++. +.....
T Consensus 148 aH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r----~nl~--~~v~~~ 220 (607)
T PRK11057 148 AHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR----PNIR--YTLVEK 220 (607)
T ss_pred ccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCC----Ccce--eeeeec
Confidence 99999987 66555444 3333 56889999999998876544443332222222211111 1111 111222
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~ 597 (747)
......+...+. ...+.++||||+|+.+++.++..|+..++.+..+||+|++.+|.++++.|..|...|||||+++
T Consensus 221 ~~~~~~l~~~l~----~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~ 296 (607)
T PRK11057 221 FKPLDQLMRYVQ----EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAF 296 (607)
T ss_pred cchHHHHHHHHH----hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechh
Confidence 223333333332 3345689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhh
Q 004518 598 ARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653 (747)
Q Consensus 598 ~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~ 653 (747)
++|||+|+|++||+|++|.+..+|+||+|||||.|.+|.|++||++.|..++..+.
T Consensus 297 ~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred hccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877766553
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-45 Score=394.39 Aligned_cols=365 Identities=27% Similarity=0.377 Sum_probs=292.7
Q ss_pred cCCcCC----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCC
Q 004518 278 ESRFDQ----CSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR 353 (747)
Q Consensus 278 ~~~f~~----l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 353 (747)
..+|.+ +..++.++..+...+|..|+|+|.+++|.++.+++++.|||||||||++|.+|+++++..... ....
T Consensus 131 l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~---~~~~ 207 (593)
T KOG0344|consen 131 LLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ---EKHK 207 (593)
T ss_pred cccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc---ccCc
Confidence 444554 568899999999999999999999999999999999999999999999999999999976543 2335
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHh--hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccccccc
Q 004518 354 PPILVLVICPTRELATQAATEASTLL--KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATR 431 (747)
Q Consensus 354 ~~~~vLIl~Ptr~La~Q~~~~~~~l~--~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~ 431 (747)
.+.+++|+.|||+||.|++.++.++. ... ++.+...............+....++|+|.||-++..++..... ...
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~-~id 285 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKL-NID 285 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCc-cch
Confidence 57889999999999999999999886 221 22222221111111111111122379999999999999976531 145
Q ss_pred CCCccEEEEeCCccccCC-CcHHHHHHHHHHCC-CCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCcccccccee
Q 004518 432 LMGVKVLVLDEADHLLDM-GFRKDIEKIIAAVP-KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVR 509 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~-~f~~~l~~il~~~~-~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~ 509 (747)
++++.++|+||||++.+. .|..++..|+..+. +...+-+||||++..+++++...+.....++.-.. ......+.
T Consensus 286 l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~---~sa~~~V~ 362 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR---NSANETVD 362 (593)
T ss_pred hheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc---hhHhhhhh
Confidence 789999999999999988 89999999988765 45677799999999999999988875544443221 12233455
Q ss_pred EEEEec-CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHH-HhccccceeccCCCCHHHHHHHHHHHhcCC
Q 004518 510 QMHLVA-PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLL-GELKLNVREIHSRKPQSYRTRVSDEFRKSK 587 (747)
Q Consensus 510 ~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L-~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~ 587 (747)
|-.+.+ ....|+..+..++... -.-++|||+.+++.|..|...| .-.++++.++||..++.+|..++++|+.|+
T Consensus 363 QelvF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 363 QELVFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hhheeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC
Confidence 544443 4455666666666654 2348999999999999999999 667899999999999999999999999999
Q ss_pred ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhh
Q 004518 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 588 ~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~ 654 (747)
+.||+||++++||+|+.||+.||+||+|.+..+|+||+||+||+|+.|++++||+..|..++.-+..
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888776654
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.6e-43 Score=406.06 Aligned_cols=324 Identities=21% Similarity=0.321 Sum_probs=254.0
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
+||..++|+|.++++.+++|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+++.+.
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~~~l~ 74 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQVDQLR 74 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999998742 1238999999999999999887
Q ss_pred HHhhhCCCceEEEEeCCcchHHHH---HHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC--c
Q 004518 377 TLLKYHPSIGVQVVIGGTRLALEQ---KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG--F 451 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~--f 451 (747)
.+ ++.+..+.++....... ..+..+..+|+++||++|....... .....++++|||||||++++|| |
T Consensus 75 ~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~~g~~f 146 (591)
T TIGR01389 75 AA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQWGHDF 146 (591)
T ss_pred Hc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccccccCcc
Confidence 75 56666777766544322 2345567899999999986432211 1234689999999999999987 6
Q ss_pred HHHHHHHH---HHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHH
Q 004518 452 RKDIEKII---AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLL 528 (747)
Q Consensus 452 ~~~l~~il---~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 528 (747)
+..+..+. ..++ ..+++++|||+++.+...+...+.............. .++ .+.......+...+..++
T Consensus 147 rp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r----~nl--~~~v~~~~~~~~~l~~~l 219 (591)
T TIGR01389 147 RPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFDR----PNL--RFSVVKKNNKQKFLLDYL 219 (591)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC----CCc--EEEEEeCCCHHHHHHHHH
Confidence 76665553 3343 4459999999999887766655543222211111110 111 122222334455555555
Q ss_pred HHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccE
Q 004518 529 REHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTL 608 (747)
Q Consensus 529 ~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~ 608 (747)
... .+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|.+|...|||||+++++|||+|+|++
T Consensus 220 ~~~----~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 220 KKH----RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred Hhc----CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 432 3468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhh
Q 004518 609 VIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653 (747)
Q Consensus 609 VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~ 653 (747)
||+|++|.|...|+|++|||||.|.+|.|+++|++.|...++.+-
T Consensus 296 VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 296 VIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877666543
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.4e-42 Score=408.62 Aligned_cols=348 Identities=21% Similarity=0.312 Sum_probs=249.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcH
Q 004518 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTR 365 (747)
Q Consensus 286 l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr 365 (747)
+++.+.+.+.. +|..|||+|.++++.+++|+|++++||||||||++|.+|+++.+...... .....++++|||+|||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--GELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--cCCCCCeEEEEEcCHH
Confidence 45666666554 79999999999999999999999999999999999999999998754321 1113467899999999
Q ss_pred HHHHHHHHHHHHH-------h----hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCC
Q 004518 366 ELATQAATEASTL-------L----KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 366 ~La~Q~~~~~~~l-------~----~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
+||.|+++.+... + ...+++.+.+.+|++....... ...++++|+|+||++|..++.+. .+...+.+
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~-~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~ 172 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK-MLKKPPHILITTPESLAILLNSP-KFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH-HHhCCCCEEEecHHHHHHHhcCh-hHHHHHhc
Confidence 9999998865532 2 1223677888888887654433 44456899999999998777543 23235789
Q ss_pred ccEEEEeCCccccCCCcHHHH----HHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcC-----CceeeeeccCCccccc
Q 004518 435 VKVLVLDEADHLLDMGFRKDI----EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKR-----DHEFINTVEEGSEETH 505 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l----~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~-----~~~~i~~~~~~~~~~~ 505 (747)
+++|||||||.+.+..+...+ ..+....+...|+|++|||+++. ..+....... +... ..+...... .
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~-~iv~~~~~k-~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDC-EIVDARFVK-P 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCce-EEEccCCCc-c
Confidence 999999999999976554443 34444445678999999999762 2333222111 1111 111110000 0
Q ss_pred cceeEEE-----EecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc------cccceeccCCCCHH
Q 004518 506 EQVRQMH-----LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL------KLNVREIHSRKPQS 574 (747)
Q Consensus 506 ~~i~~~~-----~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~------~~~v~~lh~~l~~~ 574 (747)
..+.... ...........+...+...+.. .+++||||+|+..|+.++..|+.. +..+..+||+|++.
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~ 327 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSRE 327 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHH
Confidence 0010000 0011111223344444444433 358999999999999999999873 46799999999999
Q ss_pred HHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCC-CcceEEEEeCc
Q 004518 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG-KEGQGILLLAP 643 (747)
Q Consensus 575 eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G-~~G~~~~l~s~ 643 (747)
+|..+++.|++|.++|||||+++++|||+|+|++||+|+.|.++..|+||+|||||.+ ..+.++++...
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999874 44555555543
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=8.7e-42 Score=405.27 Aligned_cols=339 Identities=20% Similarity=0.248 Sum_probs=254.7
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPV-LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~-il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
.|++++|++.+++.+.+.|+..|+|+|.++++. ++.++++|++||||||||++|.+|+++.+.. +.++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcE
Confidence 478899999999999999999999999999998 7889999999999999999999999998852 2359
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
|||+||++||.|+++.+.++... ++.+..++|+...... . ...++|+||||+++..++.+.. ..+.++++|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~~--g~~v~~~tGd~~~~~~--~--l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lv 141 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEEL--GVRVGISTGDYDSRDE--W--LGDNDIIVATSEKVDSLLRNGA---PWLDDITCV 141 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhcC--CCEEEEEeCCcCcccc--c--cCCCCEEEECHHHHHHHHhcCh---hhhhhcCEE
Confidence 99999999999999999876542 6788888887654321 1 1347999999999988887643 236789999
Q ss_pred EEeCCccccCCCcHHHHHHHHHH---CCCCCeEEEEeccCChHHHHHHHHHhcC-------CceeeeeccCCccccccce
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAA---VPKQRQTLLFSATVPEEVRQICHIALKR-------DHEFINTVEEGSEETHEQV 508 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~---~~~~~q~il~SATl~~~v~~l~~~~~~~-------~~~~i~~~~~~~~~~~~~i 508 (747)
||||||.+.+.++...++.++.. .+++.|+|+||||+++. ..+....-.. +......+... .......
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~-~~~~~~~ 219 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYG-GAIHFDD 219 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecC-Ceecccc
Confidence 99999999988887777766554 45788999999999753 2232221110 00000000000 0000000
Q ss_pred eEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc----------------------------
Q 004518 509 RQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL---------------------------- 560 (747)
Q Consensus 509 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~---------------------------- 560 (747)
.+..+.. ..+ .....++...+. .++++||||+|+..|+.++..|...
T Consensus 220 ~~~~~~~--~~~-~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (737)
T PRK02362 220 SQREVEV--PSK-DDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTET 294 (737)
T ss_pred ccccCCC--ccc-hHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccc
Confidence 0000000 111 112223333222 3469999999999999988887642
Q ss_pred --------cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEE----eC-----CCCChhhHHH
Q 004518 561 --------KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQ----VG-----LPSDREQYIH 623 (747)
Q Consensus 561 --------~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~----~d-----~p~s~~~y~Q 623 (747)
...+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.+..+|.|
T Consensus 295 ~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 295 SKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred cHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 135788999999999999999999999999999999999999999999997 66 6889999999
Q ss_pred hhccCCCCCCc--ceEEEEeCcch
Q 004518 624 RLGRTGRKGKE--GQGILLLAPWE 645 (747)
Q Consensus 624 r~GRagR~G~~--G~~~~l~s~~e 645 (747)
|+|||||.|.. |.|++++...+
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCch
Confidence 99999999864 89999987653
No 43
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-43 Score=340.30 Aligned_cols=323 Identities=31% Similarity=0.526 Sum_probs=274.4
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 279 SRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 279 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
..|.++-|+|++++++-+.||+.|+.+|.++||...-|.||+++|..|.|||.+|.+..|+.+-- ....+.+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep--------v~g~vsv 113 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP--------VDGQVSV 113 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC--------CCCeEEE
Confidence 45889999999999999999999999999999999999999999999999999999999988631 2235679
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
|++|.||+||.|+..+..++.++.|++++.+.+||..+..+...+.. .++|+|+|||+++.+..++ .++|+++..+
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k---~l~lk~vkhF 189 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNR---SLNLKNVKHF 189 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhc---cCchhhccee
Confidence 99999999999999999999999999999999999999887777765 6899999999999999877 3778999999
Q ss_pred EEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc
Q 004518 439 VLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 439 IiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
|+||||.|+. .+.+..+..|+...|...|++.||||++.+++..++.++..|..+.. ......+...+.|+|+....
T Consensus 190 vlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v--DdE~KLtLHGLqQ~YvkLke 267 (387)
T KOG0329|consen 190 VLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV--DDEAKLTLHGLQQYYVKLKE 267 (387)
T ss_pred ehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhc--cchhhhhhhhHHHHHHhhhh
Confidence 9999998875 56889999999999999999999999999999999999987666542 23334455567777776666
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~ 597 (747)
..|...+..++...- -..++||+.+... | . | ... ||||+++
T Consensus 268 ~eKNrkl~dLLd~Le----FNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lf 308 (387)
T KOG0329|consen 268 NEKNRKLNDLLDVLE----FNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLF 308 (387)
T ss_pred hhhhhhhhhhhhhhh----hcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhh
Confidence 666555665554431 2489999988654 0 0 2 112 8999999
Q ss_pred ccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCc-chHHHHHHhhh
Q 004518 598 ARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAP-WEEFFLSTIKD 654 (747)
Q Consensus 598 ~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~-~e~~~l~~l~~ 654 (747)
+||+||..|+.|||||.|.+.++|+||+|||||.|..|.++.|++. .+...+..+++
T Consensus 309 grgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqd 366 (387)
T KOG0329|consen 309 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQD 366 (387)
T ss_pred ccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhH
Confidence 9999999999999999999999999999999999999999999986 44667766654
No 44
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-41 Score=398.02 Aligned_cols=326 Identities=20% Similarity=0.206 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCC
Q 004518 304 IVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP 383 (747)
Q Consensus 304 ~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 383 (747)
.+-.+++..+.+++++|++|+||||||++|.+++++... .+++++|++|||++|.|+++.+.+......
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 445677888889999999999999999999999988752 124699999999999999998865544333
Q ss_pred CceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc-cccCCCcHHH-HHHHHHH
Q 004518 384 SIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD-HLLDMGFRKD-IEKIIAA 461 (747)
Q Consensus 384 ~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh-~ll~~~f~~~-l~~il~~ 461 (747)
+..++..+.+... ....++|+|+|||+|++++.++ ..|+++++||||||| ++++.++... +..+...
T Consensus 74 g~~VGy~vr~~~~-------~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~ 142 (819)
T TIGR01970 74 GQTVGYRVRGENK-------VSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSS 142 (819)
T ss_pred CcEEEEEEccccc-------cCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHh
Confidence 4555555554331 1234799999999999999865 458899999999999 4777666443 3456667
Q ss_pred CCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccch-HHHHHHHHHHhhcCCCCeE
Q 004518 462 VPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF-PLLYVLLREHVADNPEYKV 540 (747)
Q Consensus 462 ~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~~l~~~~~~~~~~k~ 540 (747)
++++.|+|+||||++.+. +..++.+. .++..... ...+.+.|.......++ ..+...+...+.. ..+.+
T Consensus 143 lr~dlqlIlmSATl~~~~---l~~~l~~~-~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~i 212 (819)
T TIGR01970 143 LREDLKILAMSATLDGER---LSSLLPDA-PVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSI 212 (819)
T ss_pred cCCCceEEEEeCCCCHHH---HHHHcCCC-cEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcE
Confidence 788999999999999764 34455433 33332111 12355555544433332 2223334433332 34689
Q ss_pred EEEecchhHHHHHHHHHHh---ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCC-
Q 004518 541 LVFCTTAMVTRMVADLLGE---LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPS- 616 (747)
Q Consensus 541 LVF~~s~~~~~~l~~~L~~---~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~- 616 (747)
||||+++.+++.++..|.+ .++.+.++||.|++.+|.++++.|++|..+||||||++++|||||+|++||++|+|.
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 9999999999999999987 378899999999999999999999999999999999999999999999999999985
Q ss_pred -----------------ChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCccCCC
Q 004518 617 -----------------DREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPV 662 (747)
Q Consensus 617 -----------------s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~~~~ 662 (747)
|.++|.||+|||||. ++|.||.||+..+...+.....++|.+.++
T Consensus 293 ~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L 354 (819)
T TIGR01970 293 ARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPAQDEPEILQADL 354 (819)
T ss_pred cccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhcCCCcceeccCc
Confidence 345699999999999 699999999998877776666677766554
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-40 Score=392.34 Aligned_cols=348 Identities=19% Similarity=0.218 Sum_probs=260.7
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPV-LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~-il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
+|+++++++.+.+.+++.|+..|+|+|.++++. +++++++++++|||||||++|.+|+++.+... +.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeE
Confidence 477889999999999999999999999999985 78999999999999999999999999988642 2469
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
|||+|+++||.|+++.+..+.. . ++.+..++|+...... . .+.++|+|+||+++..++.... ..++++++|
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~---~-~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lv 142 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE---W-LGKYDIIIATAEKFDSLLRHGS---SWIKDVKLV 142 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh---h-hccCCEEEEcHHHHHHHHhCCc---hhhhcCCEE
Confidence 9999999999999999887643 2 6788888888764321 1 2347999999999988876543 236899999
Q ss_pred EEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 518 (747)
||||+|.+.+.++...+..++..+....|+|+||||+++. ..+.. ++.... +.. .............+.+......
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~-~~~-~~rpv~l~~~~~~~~~~~~~~~ 218 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAEL-VVS-DWRPVKLRKGVFYQGFLFWEDG 218 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcc-ccC-CCCCCcceeeEecCCeeeccCc
Confidence 9999999999889999999999999999999999999753 34443 232111 110 0000000000011111111111
Q ss_pred --cc-hHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc---------------------------------cc
Q 004518 519 --LH-FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL---------------------------------KL 562 (747)
Q Consensus 519 --~k-~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~---------------------------------~~ 562 (747)
.+ ...+..++...+. .++++||||+|+..|+.++..|... ..
T Consensus 219 ~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (720)
T PRK00254 219 KIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRG 296 (720)
T ss_pred chhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence 11 1222233333333 2458999999999998877666321 23
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEE-------eCCCC-ChhhHHHhhccCCCCC--
Q 004518 563 NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQ-------VGLPS-DREQYIHRLGRTGRKG-- 632 (747)
Q Consensus 563 ~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~-------~d~p~-s~~~y~Qr~GRagR~G-- 632 (747)
.+..+|++|++.+|..+.+.|++|.++|||||+++++|+|+|++++||. ++.|. ...+|.||+|||||.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d 376 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYD 376 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcC
Confidence 5889999999999999999999999999999999999999999999994 45543 5679999999999975
Q ss_pred CcceEEEEeCcch-HHHHHHh
Q 004518 633 KEGQGILLLAPWE-EFFLSTI 652 (747)
Q Consensus 633 ~~G~~~~l~s~~e-~~~l~~l 652 (747)
..|.|++++...+ ..+++.+
T Consensus 377 ~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 377 EVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred CCceEEEEecCcchHHHHHHH
Confidence 5799999987654 3444433
No 46
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.4e-40 Score=391.74 Aligned_cols=325 Identities=18% Similarity=0.189 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCC
Q 004518 304 IVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP 383 (747)
Q Consensus 304 ~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 383 (747)
.+-.+++..+.+++++|++|+||||||++|.+++++... ..++++|++|||++|.|+++.+.+......
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~ 76 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------INGKIIMLEPRRLAARNVAQRLAEQLGEKP 76 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------cCCeEEEECChHHHHHHHHHHHHHHhCccc
Confidence 445567788889999999999999999999998886521 123699999999999999998876554444
Q ss_pred CceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcc-ccCCCcH-HHHHHHHHH
Q 004518 384 SIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADH-LLDMGFR-KDIEKIIAA 461 (747)
Q Consensus 384 ~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~-ll~~~f~-~~l~~il~~ 461 (747)
+..++..+++.... ...++|+|+|||+|++++..+ ..|+++++|||||||+ .++.++. ..+..++..
T Consensus 77 g~~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~ 145 (812)
T PRK11664 77 GETVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQG 145 (812)
T ss_pred CceEEEEecCcccc-------CCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHh
Confidence 66777777765432 234689999999999999865 4588999999999996 4554432 334456677
Q ss_pred CCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchH-HHHHHHHHHhhcCCCCeE
Q 004518 462 VPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFP-LLYVLLREHVADNPEYKV 540 (747)
Q Consensus 462 ~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~~l~~~~~~~~~~k~ 540 (747)
++++.|+|+||||++.+. ...++.+. .++..... ...+.+.|...+...++. .+...+...+.. ..+.+
T Consensus 146 lr~~lqlilmSATl~~~~---l~~~~~~~-~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~i 215 (812)
T PRK11664 146 LRDDLKLLIMSATLDNDR---LQQLLPDA-PVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSL 215 (812)
T ss_pred CCccceEEEEecCCCHHH---HHHhcCCC-CEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCE
Confidence 888999999999998752 23455433 33322111 123555555444333332 233344444332 35799
Q ss_pred EEEecchhHHHHHHHHHHh---ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCC-
Q 004518 541 LVFCTTAMVTRMVADLLGE---LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPS- 616 (747)
Q Consensus 541 LVF~~s~~~~~~l~~~L~~---~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~- 616 (747)
||||+++.++..+++.|.. .++.+.++||.|++.+|.+++..|++|+.+||||||++++|||||+|++||++|++.
T Consensus 216 LVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 216 LLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred EEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccc
Confidence 9999999999999999987 578899999999999999999999999999999999999999999999999988874
Q ss_pred -----------------ChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCccCC
Q 004518 617 -----------------DREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAP 661 (747)
Q Consensus 617 -----------------s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~~~ 661 (747)
|.++|.||+|||||. .+|.||.||++.+...+.....++|.+.+
T Consensus 296 ~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l~~~~~PEI~r~d 356 (812)
T PRK11664 296 ARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERAAAQSEPEILHSD 356 (812)
T ss_pred ccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhCccCCCCceeccc
Confidence 346899999999999 59999999998776555444445555443
No 47
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-41 Score=369.58 Aligned_cols=336 Identities=22% Similarity=0.214 Sum_probs=262.8
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH-HHHHhhhC
Q 004518 304 IVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE-ASTLLKYH 382 (747)
Q Consensus 304 ~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~-~~~l~~~~ 382 (747)
.-.+++|++|..|..|||||+||||||+ ++| |+|++.+........ +.++.|+.|+|..|..++.+ ..+++.+.
T Consensus 259 aeEq~IMEaIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~~~~-~gmIGITqPRRVAaiamAkRVa~EL~~~~ 333 (1172)
T KOG0926|consen 259 AEEQRIMEAINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQSSS-PGMIGITQPRRVAAIAMAKRVAFELGVLG 333 (1172)
T ss_pred HHHHHHHHHhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCccCCC-CCeeeecCchHHHHHHHHHHHHHHhccCc
Confidence 3456799999999999999999999999 888 999999987766555 55799999999999999885 45666655
Q ss_pred CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC-----CCcHHHHHH
Q 004518 383 PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-----MGFRKDIEK 457 (747)
Q Consensus 383 ~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~-----~~f~~~l~~ 457 (747)
..+++++.+.|+.. ..+.|.+||.|.|++.|+++ +.|.++++|||||||.-.- .|+...+..
T Consensus 334 ~eVsYqIRfd~ti~---------e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~ 400 (1172)
T KOG0926|consen 334 SEVSYQIRFDGTIG---------EDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVP 400 (1172)
T ss_pred cceeEEEEeccccC---------CCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHH
Confidence 67889999988763 34799999999999999987 7789999999999997441 345555555
Q ss_pred HHHHCCC------CCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHH
Q 004518 458 IIAAVPK------QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREH 531 (747)
Q Consensus 458 il~~~~~------~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 531 (747)
+.....+ ..++|+||||+......-.+.++..+++++.+..... ....|+...++.++..+.+.+.++-|
T Consensus 401 LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQf----PVsIHF~krT~~DYi~eAfrKtc~IH 476 (1172)
T KOG0926|consen 401 LRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQF----PVSIHFNKRTPDDYIAEAFRKTCKIH 476 (1172)
T ss_pred HHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccC----ceEEEeccCCCchHHHHHHHHHHHHh
Confidence 5555544 6789999999988777666777777788777633211 11123333344444444444444433
Q ss_pred hhcCCCCeEEEEecchhHHHHHHHHHHhc---------------------------------------------------
Q 004518 532 VADNPEYKVLVFCTTAMVTRMVADLLGEL--------------------------------------------------- 560 (747)
Q Consensus 532 ~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--------------------------------------------------- 560 (747)
.+.+++.+|||++++.++..++..|++.
T Consensus 477 -~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~ 555 (1172)
T KOG0926|consen 477 -KKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQE 555 (1172)
T ss_pred -hcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhh
Confidence 4567889999999999999999998651
Q ss_pred ------------------------------------------------cccceeccCCCCHHHHHHHHHHHhcCCccEEE
Q 004518 561 ------------------------------------------------KLNVREIHSRKPQSYRTRVSDEFRKSKGLILV 592 (747)
Q Consensus 561 ------------------------------------------------~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLv 592 (747)
.+.|++||+-++..++++||..-+.|.+.|+|
T Consensus 556 ~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVV 635 (1172)
T KOG0926|consen 556 LVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVV 635 (1172)
T ss_pred hhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEE
Confidence 13489999999999999999999999999999
Q ss_pred eeCCcccccCCCCccEEEEeCCCC------------------ChhhHHHhhccCCCCCCcceEEEEeCcchHH-HHHHhh
Q 004518 593 TSDVSARGVDYPDVTLVIQVGLPS------------------DREQYIHRLGRTGRKGKEGQGILLLAPWEEF-FLSTIK 653 (747)
Q Consensus 593 aT~v~~~GiDip~V~~VI~~d~p~------------------s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~-~l~~l~ 653 (747)
|||||+++|+||+|+|||++|... |.++.-||+|||||.| +||||.||+..-.. -++.+.
T Consensus 636 aTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~~~Fe~fS 714 (1172)
T KOG0926|consen 636 ATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFSNDFEEFS 714 (1172)
T ss_pred eccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhhcchhhhc
Confidence 999999999999999999877542 5566789999999998 99999999986533 455566
Q ss_pred hCCCccCCCC
Q 004518 654 DLPILKAPVP 663 (747)
Q Consensus 654 ~~~i~~~~~~ 663 (747)
.++|.+.|++
T Consensus 715 ~PEIlk~Pve 724 (1172)
T KOG0926|consen 715 LPEILKKPVE 724 (1172)
T ss_pred cHHHhhCcHH
Confidence 6666666654
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6e-40 Score=363.92 Aligned_cols=325 Identities=22% Similarity=0.323 Sum_probs=252.8
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
+|+..+++-|+++|..+++++|+++.+|||+||++||++|++-. . | .+|||.|..+|...+.+.+.
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~----------G-~TLVVSPLiSLM~DQV~~l~ 78 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---E----------G-LTLVVSPLISLMKDQVDQLE 78 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---C----------C-CEEEECchHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999997643 1 1 39999999999999999888
Q ss_pred HHhhhCCCceEEEEeCCcchHHH---HHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC--c
Q 004518 377 TLLKYHPSIGVQVVIGGTRLALE---QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG--F 451 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~--f 451 (747)
.. ++.+..+.+..+.... ...+..+..++++.+|++|..---.. ...-..+.++||||||++++|| |
T Consensus 79 ~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~---~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 79 AA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE---LLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred Hc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH---HHHhCCCceEEechHHHHhhcCCcc
Confidence 76 5666666665443322 23455566899999999985321111 0112468899999999999998 9
Q ss_pred HHHHHHHHH---HCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHH
Q 004518 452 RKDIEKIIA---AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLL 528 (747)
Q Consensus 452 ~~~l~~il~---~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 528 (747)
+..+..+-. .++ +..++.+|||.++.+...+...+......+.......+.....+. .. .+.+..+. ++
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~----~~-~~~~~q~~--fi 222 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVV----EK-GEPSDQLA--FL 222 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhh----hc-ccHHHHHH--HH
Confidence 988887743 344 778999999999999877766554433222222222222221111 11 11122222 33
Q ss_pred HHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccE
Q 004518 529 REHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTL 608 (747)
Q Consensus 529 ~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~ 608 (747)
.. ......+..||||.|+..++.++..|...|+.+..+|++|+..+|..+.+.|.++..+|+|||.++++|||.|+|++
T Consensus 223 ~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 223 AT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred Hh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 32 12234457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHh
Q 004518 609 VIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 609 VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l 652 (747)
||||++|.|+++|.|-+|||||.|.+..|++||++.|......+
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 99999999999999999999999999999999999997655543
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.6e-39 Score=374.84 Aligned_cols=318 Identities=19% Similarity=0.189 Sum_probs=238.1
Q ss_pred CCCCCCcHHHHHHHHHHHCCC-cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCe-EEEEEcCcHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGK-DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI-LVLVICPTRELATQAATE 374 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~-dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~-~vLIl~Ptr~La~Q~~~~ 374 (747)
.||+ |||||.++++.++.|+ ++++++|||||||.+|.++++.. ... ...+ ++++++|||+||.|+++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--------~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--------AKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--------ccccceEEEeCchHHHHHHHHHH
Confidence 4887 9999999999999998 67788999999999766554422 111 1123 355577999999999999
Q ss_pred HHHHhhhCC----------------------CceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccc----
Q 004518 375 ASTLLKYHP----------------------SIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGF---- 428 (747)
Q Consensus 375 ~~~l~~~~~----------------------~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~---- 428 (747)
+.++++..+ .+++..++||.....+...+. .+++|||+|+ +++.+..-+
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~-~~p~IIVgT~----D~i~sr~L~~gYg 156 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDP-HRPAVIVGTV----DMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcC-CCCcEEEECH----HHHcCCccccccc
Confidence 999987652 478899999999887776664 4589999994 555443210
Q ss_pred ---------cccCCCccEEEEeCCccccCCCcHHHHHHHHHHC--CC---CCeEEEEeccCChHHHHHHHHHhcCCceee
Q 004518 429 ---------ATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV--PK---QRQTLLFSATVPEEVRQICHIALKRDHEFI 494 (747)
Q Consensus 429 ---------~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~--~~---~~q~il~SATl~~~v~~l~~~~~~~~~~~i 494 (747)
...|.++++||||||| ++++|...+..|+..+ ++ ++|+++||||++.++..+...++..+.. +
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~-i 233 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK-H 233 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce-e
Confidence 0126789999999999 6789999999999975 43 2799999999999888877776654432 2
Q ss_pred eeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHH
Q 004518 495 NTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQS 574 (747)
Q Consensus 495 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~ 574 (747)
.+.. .......+.++ +....+.+...+...+..... ..++++||||+|+..++.+++.|++.++ ..|||.|++.
T Consensus 234 ~V~~--~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~ 307 (844)
T TIGR02621 234 PVLK--KRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGA 307 (844)
T ss_pred eccc--ccccccceEEE-EecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHH
Confidence 2211 11122233443 333333444444444433332 2346899999999999999999998776 8999999999
Q ss_pred HHH-----HHHHHHhc----CC-------ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceE-
Q 004518 575 YRT-----RVSDEFRK----SK-------GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG- 637 (747)
Q Consensus 575 eR~-----~v~~~F~~----g~-------~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~- 637 (747)
+|. ++++.|++ |. ..|||||+++++||||+. ++||++..| .++|+||+||+||.|+.|.+
T Consensus 308 dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~ 384 (844)
T TIGR02621 308 ERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQ 384 (844)
T ss_pred HHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCce
Confidence 999 88999987 44 679999999999999986 889988777 69999999999999975443
Q ss_pred EEEe
Q 004518 638 ILLL 641 (747)
Q Consensus 638 ~~l~ 641 (747)
+.++
T Consensus 385 i~vv 388 (844)
T TIGR02621 385 IAVV 388 (844)
T ss_pred EEEE
Confidence 4444
No 50
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.4e-39 Score=369.67 Aligned_cols=320 Identities=16% Similarity=0.183 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCChhHHH---------HHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 004518 304 IVQEATLPVLLKGKDVLAKAKTGTGKTVA---------FLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374 (747)
Q Consensus 304 ~iQ~~~i~~il~~~dvlv~a~TGsGKTl~---------~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 374 (747)
.+|+++++.+++++++|++|+||||||++ |++|.+..+.+-. ......+++|++|||+||.|+...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----~~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----PNFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----cccCCcEEEEECcHHHHHHHHHHH
Confidence 57999999999999999999999999996 3333343331100 011245699999999999999999
Q ss_pred HHHHhhh--CCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcH
Q 004518 375 ASTLLKY--HPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFR 452 (747)
Q Consensus 375 ~~~l~~~--~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~ 452 (747)
+.+..++ ..+..+.+.+||... ..........+|+|+|++... ..|+++++|||||||++...+
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~--~~~~t~~k~~~Ilv~T~~L~l----------~~L~~v~~VVIDEaHEr~~~~-- 307 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPD--ELINTNPKPYGLVFSTHKLTL----------NKLFDYGTVIIDEVHEHDQIG-- 307 (675)
T ss_pred HHHHhCccccCCceEEEEECCcch--HHhhcccCCCCEEEEeCcccc----------cccccCCEEEccccccCccch--
Confidence 8876654 245677888998762 211222235799999976311 247789999999999988765
Q ss_pred HHHHHHHHHC-CCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc---------cchH
Q 004518 453 KDIEKIIAAV-PKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD---------LHFP 522 (747)
Q Consensus 453 ~~l~~il~~~-~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~---------~k~~ 522 (747)
..+..++..+ +..+|+++||||++.++..+ ..++.+ +.++.+. ..+...+.+.+...... ....
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~-p~~I~I~----grt~~pV~~~yi~~~~~~~~~~~y~~~~k~ 381 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPN-PAFVHIP----GGTLFPISEVYVKNKYNPKNKRAYIEEEKK 381 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcC-CcEEEeC----CCcCCCeEEEEeecCcccccchhhhHHHHH
Confidence 3444444433 34469999999999888776 466654 3444432 12223555655433211 0011
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHH-hcCCccEEEeeCCccc
Q 004518 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEF-RKSKGLILVTSDVSAR 599 (747)
Q Consensus 523 ~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F-~~g~~~VLvaT~v~~~ 599 (747)
.+...+... ....++.+||||+++.+++.+++.|.+. ++.+.++||.|++. .++++.| ++|+.+||||||+|+|
T Consensus 382 ~~l~~L~~~-~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 382 NIVTALKKY-TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHh-hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 122222221 1123468999999999999999999887 68999999999985 4666777 6899999999999999
Q ss_pred ccCCCCccEEEEeC---CCC---------ChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHh
Q 004518 600 GVDYPDVTLVIQVG---LPS---------DREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 600 GiDip~V~~VI~~d---~p~---------s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l 652 (747)
|||||+|++||++| .|. |.++|+||+|||||. ++|.|+.|+++.+...+.++
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 99999999999999 565 888999999999999 69999999998775434443
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.3e-39 Score=378.84 Aligned_cols=322 Identities=19% Similarity=0.202 Sum_probs=244.8
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHCC------CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 285 SISALSLKGIKD-AGYEKMTIVQEATLPVLLKG------KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 285 ~l~~~l~~~l~~-~g~~~~t~iQ~~~i~~il~~------~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
+.+..+...+.. ++| .||++|.++|+.++++ +|+++||+||+|||.+|++|++..+... .+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~q 502 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQ 502 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------Ce
Confidence 344555566554 588 4999999999999875 7999999999999999999999887532 35
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHH---HHHHHhcCCCcEEEECchhHHHHHHccccccccCCC
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL---EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
++|++||++||.|+++.+.+++... ++.+..+.++..... ....+..+.++|+|+||.. +... ..+.+
T Consensus 503 vlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~----v~f~~ 573 (926)
T TIGR00580 503 VAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKD----VKFKD 573 (926)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCC----CCccc
Confidence 9999999999999999999987655 577777777665332 2334555678999999942 3322 45789
Q ss_pred ccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEe
Q 004518 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV 514 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 514 (747)
+.+|||||+|++. ......+..++...|+++||||+.+....+....+. .+.++...... ...+......
T Consensus 574 L~llVIDEahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~-d~s~I~~~p~~----R~~V~t~v~~ 643 (926)
T TIGR00580 574 LGLLIIDEEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIR-DLSIIATPPED----RLPVRTFVME 643 (926)
T ss_pred CCEEEeecccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCC-CcEEEecCCCC----ccceEEEEEe
Confidence 9999999999853 233445666778899999999987765544433332 33333322111 1123332221
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCCccEEE
Q 004518 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSKGLILV 592 (747)
Q Consensus 515 ~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLv 592 (747)
. + ...+...+...+.. +++++|||+++..++.+++.|++. ++.+..+||.|++.+|.+++..|++|+.+|||
T Consensus 644 ~--~--~~~i~~~i~~el~~--g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILV 717 (926)
T TIGR00580 644 Y--D--PELVREAIRRELLR--GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLV 717 (926)
T ss_pred c--C--HHHHHHHHHHHHHc--CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 1 1 12233333333332 468999999999999999999985 68899999999999999999999999999999
Q ss_pred eeCCcccccCCCCccEEEEeCCCC-ChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 593 TSDVSARGVDYPDVTLVIQVGLPS-DREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 593 aT~v~~~GiDip~V~~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
||+++++|||+|+|++||+++.|. +..+|.||+||+||.|+.|.|++++.+
T Consensus 718 aT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 718 CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred ECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 999999999999999999999875 678999999999999999999999864
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=364.00 Aligned_cols=340 Identities=24% Similarity=0.357 Sum_probs=267.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcH
Q 004518 286 ISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTR 365 (747)
Q Consensus 286 l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr 365 (747)
|++.+.+.++.. |..|||.|.++||.++.|++++++||||||||+++.+|+++.+.+.+ ......+..+|+|+|.|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPLK 83 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcHH
Confidence 678888888887 99999999999999999999999999999999999999999998874 12234578899999999
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcc
Q 004518 366 ELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADH 445 (747)
Q Consensus 366 ~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ 445 (747)
+|++.+...+..++... ++.+.+.+|++.... .++...+++||+|+||+.|.-++... .+...|.++.+|||||+|.
T Consensus 84 ALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~e-r~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 84 ALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSE-KQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred HHHHHHHHHHHHHHHHc-CCccceecCCCChHH-hhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhh
Confidence 99999999999998876 889988888887554 44555678999999999997776543 3445689999999999999
Q ss_pred ccCCCcH----HHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCC--ceeeeeccCCccccccceeEEEEecCcc-
Q 004518 446 LLDMGFR----KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRD--HEFINTVEEGSEETHEQVRQMHLVAPLD- 518 (747)
Q Consensus 446 ll~~~f~----~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~- 518 (747)
+.+.... -.++.+....+ +.|.|++|||+.+. ....+...... ..++..... . .. +..+..+..
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~-k---~~---~i~v~~p~~~ 231 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA-K---KL---EIKVISPVED 231 (814)
T ss_pred hhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC-C---cc---eEEEEecCCc
Confidence 8864433 33445555555 89999999999743 33444433322 233322111 1 11 111222211
Q ss_pred -----cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcc-ccceeccCCCCHHHHHHHHHHHhcCCccEEE
Q 004518 519 -----LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK-LNVREIHSRKPQSYRTRVSDEFRKSKGLILV 592 (747)
Q Consensus 519 -----~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~-~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLv 592 (747)
.-...++..+.....++ ..+|||+||+..++.++..|++.+ ..+..+||.++..+|..+.++|++|..+++|
T Consensus 232 ~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV 309 (814)
T COG1201 232 LIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVV 309 (814)
T ss_pred cccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEE
Confidence 12333444454444443 389999999999999999999987 8999999999999999999999999999999
Q ss_pred eeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCC-CCcceEEEEeCc
Q 004518 593 TSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK-GKEGQGILLLAP 643 (747)
Q Consensus 593 aT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~-G~~G~~~~l~s~ 643 (747)
||..++-|||+.+|+.||||+.|.++..++||+||+|+. |....++++...
T Consensus 310 ~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 310 ATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999964 555777777665
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-38 Score=375.59 Aligned_cols=336 Identities=20% Similarity=0.240 Sum_probs=247.6
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE
Q 004518 280 RFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVL 359 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vL 359 (747)
.|++++|++.+++.+...++. ++++|.++++.+.++++++++||||||||+++.+++++.+... .++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEE
Confidence 477889999999999999987 9999999999999999999999999999999999999887532 3499
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEE
Q 004518 360 VICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLV 439 (747)
Q Consensus 360 Il~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vI 439 (747)
|++|+++||.|+++.+.++.. .++.+...+|+....... + ..++|+|+||+++..++.++. ..+.++++||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~~--~--~~~dIiv~Tpek~~~l~~~~~---~~l~~v~lvV 140 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPDF--I--KRYDVVILTSEKADSLIHHDP---YIINDVGLIV 140 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChhh--h--ccCCEEEECHHHHHHHHhCCh---hHHhhcCEEE
Confidence 999999999999999987643 267788888876543221 1 247999999999988877653 3478899999
Q ss_pred EeCCccccCCCcHHHHHHHHH---HCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccce--eEEEEe
Q 004518 440 LDEADHLLDMGFRKDIEKIIA---AVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQV--RQMHLV 514 (747)
Q Consensus 440 iDEAh~ll~~~f~~~l~~il~---~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i--~~~~~~ 514 (747)
|||||++.+.++...++.++. .+++..|+|+||||+++. ..+... +.... +.......+...... .+.+.
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~--~~~~~r~vpl~~~i~~~~~~~~- 215 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASL--IKSNFRPVPLKLGILYRKRLIL- 215 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCc--cCCCCCCCCeEEEEEecCeeee-
Confidence 999999988777666666644 456788999999999753 334332 22111 110000000000000 01111
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-------------------------cccceeccC
Q 004518 515 APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL-------------------------KLNVREIHS 569 (747)
Q Consensus 515 ~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~-------------------------~~~v~~lh~ 569 (747)
.........+..++..... .++++||||+++..++.++..|.+. ...+..+||
T Consensus 216 ~~~~~~~~~~~~~i~~~~~--~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~ha 293 (674)
T PRK01172 216 DGYERSQVDINSLIKETVN--DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHA 293 (674)
T ss_pred cccccccccHHHHHHHHHh--CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecC
Confidence 0111111113344444332 3469999999999999999888653 124778999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCC---------CCChhhHHHhhccCCCCCC--cceEE
Q 004518 570 RKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL---------PSDREQYIHRLGRTGRKGK--EGQGI 638 (747)
Q Consensus 570 ~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~---------p~s~~~y~Qr~GRagR~G~--~G~~~ 638 (747)
+|++.+|..+++.|++|.++|||||+++++|+|+|+..+|| ++. |.++.+|.||+|||||.|. .|.|+
T Consensus 294 gl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~ 372 (674)
T PRK01172 294 GLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGY 372 (674)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEE
Confidence 99999999999999999999999999999999999975555 332 4688899999999999984 67788
Q ss_pred EEeCcc
Q 004518 639 LLLAPW 644 (747)
Q Consensus 639 ~l~s~~ 644 (747)
+++...
T Consensus 373 i~~~~~ 378 (674)
T PRK01172 373 IYAASP 378 (674)
T ss_pred EEecCc
Confidence 876543
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2e-37 Score=363.10 Aligned_cols=318 Identities=20% Similarity=0.262 Sum_probs=237.4
Q ss_pred HHHHHH-HHCCCCCCcHHHHHHHHHHHCC------CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEE
Q 004518 289 LSLKGI-KDAGYEKMTIVQEATLPVLLKG------KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVI 361 (747)
Q Consensus 289 ~l~~~l-~~~g~~~~t~iQ~~~i~~il~~------~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl 361 (747)
.+.+.+ ..++| .||++|+++++.|.++ .++|++|+||||||++|++|++..+.. +.+++|+
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lil 316 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALM 316 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEE
Confidence 344443 45677 5999999999999886 489999999999999999999988742 3469999
Q ss_pred cCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHH---HHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 362 CPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL---EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 362 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
+||++||.|+++.+++++... ++.+.+++|+..... ....+..+.++|+|+||+.+.+. ..+.++++|
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lv 387 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLV 387 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceE
Confidence 999999999999999998765 688999999987543 23345566799999999877432 346789999
Q ss_pred EEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 518 (747)
||||+|++... ....+.......++++||||+.+....+.. +.......+..... ....+..... . .
T Consensus 388 VIDE~Hrfg~~-----qr~~l~~~~~~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~p~----~r~~i~~~~~--~-~ 454 (681)
T PRK10917 388 IIDEQHRFGVE-----QRLALREKGENPHVLVMTATPIPRTLAMTA-YGDLDVSVIDELPP----GRKPITTVVI--P-D 454 (681)
T ss_pred EEechhhhhHH-----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHH-cCCCceEEEecCCC----CCCCcEEEEe--C-c
Confidence 99999986422 222333445568899999998765433322 11112222221111 0112222222 1 2
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEecch--------hHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCCc
Q 004518 519 LHFPLLYVLLREHVADNPEYKVLVFCTTA--------MVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSKG 588 (747)
Q Consensus 519 ~k~~~l~~~l~~~~~~~~~~k~LVF~~s~--------~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~~ 588 (747)
.....++..+...+. .+.+++|||+.+ ..+..+++.|... ++.+..+||.|++.+|..+++.|++|+.
T Consensus 455 ~~~~~~~~~i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~ 532 (681)
T PRK10917 455 SRRDEVYERIREEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEI 532 (681)
T ss_pred ccHHHHHHHHHHHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 223344455555443 345999999954 3455667777765 4789999999999999999999999999
Q ss_pred cEEEeeCCcccccCCCCccEEEEeCCCC-ChhhHHHhhccCCCCCCcceEEEEeC
Q 004518 589 LILVTSDVSARGVDYPDVTLVIQVGLPS-DREQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 589 ~VLvaT~v~~~GiDip~V~~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
+|||||+++++|||+|++++||+++.|. ..+.|.||+||+||.|..|.|++++.
T Consensus 533 ~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 533 DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999999999999986 57888999999999999999999995
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.3e-37 Score=376.49 Aligned_cols=319 Identities=19% Similarity=0.191 Sum_probs=241.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHCC------CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEE
Q 004518 288 ALSLKGIKDAGYEKMTIVQEATLPVLLKG------KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVI 361 (747)
Q Consensus 288 ~~l~~~l~~~g~~~~t~iQ~~~i~~il~~------~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl 361 (747)
.+..+....++| .+|+.|.++|+.++.+ +|+++||+||+|||.+|+.+++..+.. +.+++|+
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvL 655 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVL 655 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEE
Confidence 344455567788 6999999999999987 899999999999999998888776532 3469999
Q ss_pred cCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHH---HHhcCCCcEEEECchhHHHHHHccccccccCCCccEE
Q 004518 362 CPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQK---RMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVL 438 (747)
Q Consensus 362 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~v 438 (747)
+||++||.|+++.+.+.+... ++.+.++.++.+...+.. .+..+.++|+|+||+.| ... ..+.++.+|
T Consensus 656 vPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~----v~~~~L~lL 726 (1147)
T PRK10689 656 VPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSD----VKWKDLGLL 726 (1147)
T ss_pred eCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCC----CCHhhCCEE
Confidence 999999999999999876544 577778887776554433 23346789999999643 222 346789999
Q ss_pred EEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcc
Q 004518 439 VLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLD 518 (747)
Q Consensus 439 IiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 518 (747)
||||+|++ ++. ....+..++.++|+++||||+.+....+....+. ++.++...... ...+.+.....
T Consensus 727 VIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~-d~~~I~~~p~~----r~~v~~~~~~~--- 793 (1147)
T PRK10689 727 IVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMR-DLSIIATPPAR----RLAVKTFVREY--- 793 (1147)
T ss_pred EEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCC-CcEEEecCCCC----CCCceEEEEec---
Confidence 99999996 332 2344567788999999999988877766665554 33344322111 11232222211
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 519 ~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
........++.... .+++++|||+++..++.+++.|.+. ++.+..+||.|++.+|.+++..|++|+.+|||||++
T Consensus 794 ~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI 870 (1147)
T PRK10689 794 DSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 (1147)
T ss_pred CcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch
Confidence 11112222333322 2468999999999999999999987 778999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCC-CChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 597 SARGVDYPDVTLVIQVGLP-SDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~p-~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
+++|||+|+|++||..+.. .+...|+||+||+||.|+.|.|++++..
T Consensus 871 ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999999999955443 3556799999999999999999998854
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.1e-37 Score=360.67 Aligned_cols=318 Identities=21% Similarity=0.280 Sum_probs=234.6
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHCC------CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEc
Q 004518 289 LSLKGIKDAGYEKMTIVQEATLPVLLKG------KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC 362 (747)
Q Consensus 289 ~l~~~l~~~g~~~~t~iQ~~~i~~il~~------~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~ 362 (747)
.+.+.+..++| .||++|+++++.|+.+ .+.+++|+||||||++|++|++..+.. +.+++|++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlila 291 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMA 291 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEC
Confidence 34455677888 6999999999999876 368999999999999999999988743 34599999
Q ss_pred CcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHH---HHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEE
Q 004518 363 PTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL---EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLV 439 (747)
Q Consensus 363 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vI 439 (747)
||++||.|+++.+.+++... ++.+.+++|+..... ....+..+.++|+|+||+.+.+. ..+.++++||
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvV 362 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVI 362 (630)
T ss_pred CHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEE
Confidence 99999999999999987754 688999999877554 33445566789999999877432 3467899999
Q ss_pred EeCCccccCCCcHHHHHHHHHHCC--CCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc
Q 004518 440 LDEADHLLDMGFRKDIEKIIAAVP--KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 440 iDEAh~ll~~~f~~~l~~il~~~~--~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
|||+|++.... +. .+..... ...++++||||+.+....+... .......+...... ...+..... ..
T Consensus 363 IDEaH~fg~~q-r~---~l~~~~~~~~~~~~l~~SATp~prtl~l~~~-~~l~~~~i~~~p~~----r~~i~~~~~--~~ 431 (630)
T TIGR00643 363 IDEQHRFGVEQ-RK---KLREKGQGGFTPHVLVMSATPIPRTLALTVY-GDLDTSIIDELPPG----RKPITTVLI--KH 431 (630)
T ss_pred EechhhccHHH-HH---HHHHhcccCCCCCEEEEeCCCCcHHHHHHhc-CCcceeeeccCCCC----CCceEEEEe--Cc
Confidence 99999864321 22 2222222 2678999999976643322211 11111111111110 112222221 11
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecch--------hHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCC
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTA--------MVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSK 587 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~--------~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~ 587 (747)
+.+ ..++..+...+.. +.+++|||+.. ..+..++..|.+. ++.+..+||+|++.+|..+++.|++|+
T Consensus 432 ~~~-~~~~~~i~~~l~~--g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~ 508 (630)
T TIGR00643 432 DEK-DIVYEFIEEEIAK--GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE 508 (630)
T ss_pred chH-HHHHHHHHHHHHh--CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 222 4445555544433 45899999976 3455666777653 678999999999999999999999999
Q ss_pred ccEEEeeCCcccccCCCCccEEEEeCCCC-ChhhHHHhhccCCCCCCcceEEEEe
Q 004518 588 GLILVTSDVSARGVDYPDVTLVIQVGLPS-DREQYIHRLGRTGRKGKEGQGILLL 641 (747)
Q Consensus 588 ~~VLvaT~v~~~GiDip~V~~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~l~ 641 (747)
.+|||||+++++|||+|++++||+++.|. +.+.|.||+||+||.|++|.|++++
T Consensus 509 ~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 509 VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999999999999999986 6788899999999999999999998
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7.1e-37 Score=371.41 Aligned_cols=309 Identities=23% Similarity=0.307 Sum_probs=219.8
Q ss_pred EEcCCCChhHHHHHHHHHHHHHcCCCCCC--CCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh-----------hCCCceE
Q 004518 321 AKAKTGTGKTVAFLLPSIEVVIKSPPVDR--DQRRPPILVLVICPTRELATQAATEASTLLK-----------YHPSIGV 387 (747)
Q Consensus 321 v~a~TGsGKTl~~~lpil~~l~~~~~~~~--~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~-----------~~~~~~~ 387 (747)
|+||||||||++|.+|+++.++....... .....++++|||+|+++|+.|+.+.++..+. ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986532110 0112357899999999999999998865221 1236888
Q ss_pred EEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC----cHHHHHHHHHHCC
Q 004518 388 QVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG----FRKDIEKIIAAVP 463 (747)
Q Consensus 388 ~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~----f~~~l~~il~~~~ 463 (747)
.+++|++......+ +..++++|||+||++|..++.++. ...|+++++|||||+|.|.+.. +...+..+...++
T Consensus 81 ~vrtGDt~~~eR~r-ll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~ 157 (1490)
T PRK09751 81 GIRTGDTPAQERSK-LTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH 157 (1490)
T ss_pred EEEECCCCHHHHHH-HhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC
Confidence 88999887665443 444568999999999988876532 2357899999999999998653 3455666667777
Q ss_pred CCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCccc----------------ch----HH
Q 004518 464 KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL----------------HF----PL 523 (747)
Q Consensus 464 ~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~----------------k~----~~ 523 (747)
.+.|+|++|||+++. ..+.+......+..+. ..... ....+. ..+...... +. ..
T Consensus 158 ~~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv--~~~~~-r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~ 232 (1490)
T PRK09751 158 TSAQRIGLSATVRSA-SDVAAFLGGDRPVTVV--NPPAM-RHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPY 232 (1490)
T ss_pred CCCeEEEEEeeCCCH-HHHHHHhcCCCCEEEE--CCCCC-cccceE-EEEecCchhhccccccccccccchhhhhhhhHH
Confidence 889999999999873 4555433222122221 11111 111121 111111000 00 11
Q ss_pred HHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcc---------------------------------ccceeccCC
Q 004518 524 LYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK---------------------------------LNVREIHSR 570 (747)
Q Consensus 524 l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~---------------------------------~~v~~lh~~ 570 (747)
+...+...+. ...++||||+|+..|+.++..|++.. +.+..+||+
T Consensus 233 v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 233 IETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeecccc
Confidence 1111112122 23589999999999999999997641 125689999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCC-CCcceEEE
Q 004518 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK-GKEGQGIL 639 (747)
Q Consensus 571 l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~-G~~G~~~~ 639 (747)
|++++|..+.+.|++|+++|||||+.+++||||++|++||+|+.|.++.+|+||+|||||. |..+.+++
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli 380 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLF 380 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999996 33344553
No 58
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.4e-36 Score=362.82 Aligned_cols=323 Identities=22% Similarity=0.262 Sum_probs=222.3
Q ss_pred cHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhC
Q 004518 303 TIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYH 382 (747)
Q Consensus 303 t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 382 (747)
+....+++..+.+++.+||+|+||||||+ ++|.+ ++..+.. ....|+++.|+|..|..++..+.+.....
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~--lle~g~g------~~g~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKI--CLELGRG------VKGLIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHH--HHHcCCC------CCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 34456778888899999999999999999 78833 3322211 12357888997755555544443332210
Q ss_pred --CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc-cccCCCcHHH-HHHH
Q 004518 383 --PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD-HLLDMGFRKD-IEKI 458 (747)
Q Consensus 383 --~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh-~ll~~~f~~~-l~~i 458 (747)
..+.+.+.+.... ...++|+|||||+|++++..+ ..|+++++||||||| ++++.+|... +..+
T Consensus 146 lG~~VGY~vrf~~~~---------s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~l 212 (1294)
T PRK11131 146 LGGCVGYKVRFNDQV---------SDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKEL 212 (1294)
T ss_pred hcceeceeecCcccc---------CCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHh
Confidence 1122222221111 245899999999999999865 348899999999999 5888888753 3333
Q ss_pred HHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCccc---chHHHHHH---HHHHh
Q 004518 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL---HFPLLYVL---LREHV 532 (747)
Q Consensus 459 l~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~~---l~~~~ 532 (747)
+.. .++.|+|+||||++.+ .+.+.+.. .+ ++.+... . ..+...+.....+. +...+..+ +....
T Consensus 213 L~~-rpdlKvILmSATid~e--~fs~~F~~-ap-vI~V~Gr----~-~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 213 LPR-RPDLKVIITSATIDPE--RFSRHFNN-AP-IIEVSGR----T-YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG 282 (1294)
T ss_pred hhc-CCCceEEEeeCCCCHH--HHHHHcCC-CC-EEEEcCc----c-ccceEEEeecccccchhhHHHHHHHHHHHHHHh
Confidence 332 3578999999999754 44444432 22 3333211 1 13444444332211 22333333 33222
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHHhcccc---ceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEE
Q 004518 533 ADNPEYKVLVFCTTAMVTRMVADLLGELKLN---VREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLV 609 (747)
Q Consensus 533 ~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~---v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~V 609 (747)
....+.+||||++..+++.+++.|...++. +.++||.|++.+|.++++. .|..+||||||++++|||||+|++|
T Consensus 283 -~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 283 -REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred -cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEE
Confidence 234578999999999999999999987664 7899999999999999986 5788999999999999999999999
Q ss_pred EEeCC---------------C---CChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCccCCC
Q 004518 610 IQVGL---------------P---SDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPV 662 (747)
Q Consensus 610 I~~d~---------------p---~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~~~~ 662 (747)
|++|. | .|.++|.||+|||||. .+|.||.||+..+..-+.....++|.+.++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~~~~~PEIlR~~L 429 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRPEFTDPEILRTNL 429 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhhcccCCccccCCH
Confidence 99873 3 4568999999999999 599999999987755454445556655543
No 59
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-36 Score=309.78 Aligned_cols=337 Identities=19% Similarity=0.233 Sum_probs=244.4
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHHHHCC-CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcH
Q 004518 289 LSLKGIKD-AGYEKM-TIVQEATLPVLLKG-KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTR 365 (747)
Q Consensus 289 ~l~~~l~~-~g~~~~-t~iQ~~~i~~il~~-~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr 365 (747)
.+.++|++ +|+..+ ++.|++++.++.++ +||.|++|||+||++||+||+|-+ +...||+.|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLi 71 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLI 71 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHH
Confidence 34555655 355544 78999999888765 899999999999999999998765 23589999999
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHH---HHHh--cCCCcEEEECchhHH-----HHHHccccccccCCCc
Q 004518 366 ELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ---KRMQ--ANPCQILVATPGRLR-----DHIENTAGFATRLMGV 435 (747)
Q Consensus 366 ~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~---~~l~--~~~~~IlV~Tpg~Ll-----~~l~~~~~~~~~L~~i 435 (747)
+|...+.+.+..| .+.+..+..-.+..... ..+. +.+..|++.||++.. .+|..- .+-..+
T Consensus 72 ALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L----~~r~~L 142 (641)
T KOG0352|consen 72 ALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL----ANRDVL 142 (641)
T ss_pred HHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH----hhhcee
Confidence 9999999988877 33333333333222111 1222 234679999998653 222110 112357
Q ss_pred cEEEEeCCccccCCC--cHHHHHHHH--HHCCCCCeEEEEeccCChHHHHHHHH--HhcCCceeeeeccCCcccccccee
Q 004518 436 KVLVLDEADHLLDMG--FRKDIEKII--AAVPKQRQTLLFSATVPEEVRQICHI--ALKRDHEFINTVEEGSEETHEQVR 509 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~--f~~~l~~il--~~~~~~~q~il~SATl~~~v~~l~~~--~~~~~~~~i~~~~~~~~~~~~~i~ 509 (747)
.++|+||||+..+|| |+.++..+- ...-.....+.+|||.++++.+.+.. .+++|..+..+... .......+.
T Consensus 143 ~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R~NLFYD~~ 221 (641)
T KOG0352|consen 143 RYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-RDNLFYDNH 221 (641)
T ss_pred eeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-hhhhhHHHH
Confidence 899999999999998 777777653 33334667999999999999876544 34444333322110 000110000
Q ss_pred EEEEecCcccchHHHHHHHHHHhh---------cCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHH
Q 004518 510 QMHLVAPLDLHFPLLYVLLREHVA---------DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVS 580 (747)
Q Consensus 510 ~~~~~~~~~~k~~~l~~~l~~~~~---------~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~ 580 (747)
........+..|..+....+- +...+-.||||.|++.|+.++-.|...|++...+|.++...+|..|.
T Consensus 222 ---~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 222 ---MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred ---HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 001112233334444333322 11234679999999999999999999999999999999999999999
Q ss_pred HHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHh
Q 004518 581 DEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 581 ~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l 652 (747)
+.|+++++.||+||..+++|+|-|+|++|||+++|.|.+-|.|..|||||.|.+..|.++|+..|..-+..|
T Consensus 299 e~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 299 EKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred HHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887666544
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.9e-36 Score=361.39 Aligned_cols=298 Identities=22% Similarity=0.224 Sum_probs=229.8
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
.|+ .|+++|+.++|.++.|+|++++||||+|||+ |.++++..+.. .+.++|||+|||+||.|+++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 466 7999999999999999999999999999996 55555554422 14569999999999999999999
Q ss_pred HHhhhCCCceEEEEeCCcch-----HHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC---
Q 004518 377 TLLKYHPSIGVQVVIGGTRL-----ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD--- 448 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~-----~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~--- 448 (747)
.++... ++.+..++++... ......+..+.++|+|+||++|.+++.. ..+..+++|||||||+|++
T Consensus 145 ~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 145 KFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhccc
Confidence 998765 5667777766542 2223344556689999999999988762 3355799999999999986
Q ss_pred --------CCcH-HHHHHHHHHCCC------------------------CCeEEEEeccCChH-HHHHHHHHhcCCceee
Q 004518 449 --------MGFR-KDIEKIIAAVPK------------------------QRQTLLFSATVPEE-VRQICHIALKRDHEFI 494 (747)
Q Consensus 449 --------~~f~-~~l~~il~~~~~------------------------~~q~il~SATl~~~-v~~l~~~~~~~~~~~i 494 (747)
+||. ..+..++..++. .+|++++|||+++. +... .+..... +
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~~ll~-~ 294 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFRELLG-F 294 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---Hhhccce-E
Confidence 6774 677777777764 68999999999874 4321 1111111 1
Q ss_pred eeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhH---HHHHHHHHHhccccceeccCCC
Q 004518 495 NTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMV---TRMVADLLGELKLNVREIHSRK 571 (747)
Q Consensus 495 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~---~~~l~~~L~~~~~~v~~lh~~l 571 (747)
.+. .......++.+.++... .+...+..++... +.++||||++... ++.++++|+..|+++..+||+|
T Consensus 295 ~v~--~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 295 EVG--SPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred Eec--CcccccCCceEEEEEcc--cHHHHHHHHHHhc-----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 111 11223446677776554 4566666666432 2489999999777 9999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEe----eCCcccccCCCC-ccEEEEeCCCC------ChhhHHHhhccCCC
Q 004518 572 PQSYRTRVSDEFRKSKGLILVT----SDVSARGVDYPD-VTLVIQVGLPS------DREQYIHRLGRTGR 630 (747)
Q Consensus 572 ~~~eR~~v~~~F~~g~~~VLva----T~v~~~GiDip~-V~~VI~~d~p~------s~~~y~Qr~GRagR 630 (747)
.+.++.|++|+.+|||| |++++||||+|+ |++|||||+|. ....|.||+||+..
T Consensus 366 -----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 -----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred -----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 699999999999 89999999998 67889999999853
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5.1e-36 Score=370.27 Aligned_cols=326 Identities=17% Similarity=0.220 Sum_probs=244.9
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHH
Q 004518 290 SLKGIKD-AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELA 368 (747)
Q Consensus 290 l~~~l~~-~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 368 (747)
+.+.+++ .|+ .|+++|+++++.+++++|++++||||+|||++++++++.... .+.++|||+||++||
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHH
Confidence 3444554 799 699999999999999999999999999999976766654422 134699999999999
Q ss_pred HHHHHHHHHHhhhCC-CceEEEEeCCcchHHHH---HHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc
Q 004518 369 TQAATEASTLLKYHP-SIGVQVVIGGTRLALEQ---KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 369 ~Q~~~~~~~l~~~~~-~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh 444 (747)
.|+++.+..++.... ++.+..++|+.+...+. ..+..+.++|+|+||++|.+.+... . ..++++|||||||
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECce
Confidence 999999999876542 45666777887765442 3455566899999999998876532 1 2578999999999
Q ss_pred cccC-----------CCcHHHHHH----HHH----------------------HCCCCCe-EEEEeccCChH--HHHHHH
Q 004518 445 HLLD-----------MGFRKDIEK----IIA----------------------AVPKQRQ-TLLFSATVPEE--VRQICH 484 (747)
Q Consensus 445 ~ll~-----------~~f~~~l~~----il~----------------------~~~~~~q-~il~SATl~~~--v~~l~~ 484 (747)
+|++ +||...+.. ++. .+++.+| ++++|||+++. +..+
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l-- 288 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL-- 288 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH--
Confidence 9986 478777754 322 2345555 67799999863 2222
Q ss_pred HHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhH---HHHHHHHHHhcc
Q 004518 485 IALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMV---TRMVADLLGELK 561 (747)
Q Consensus 485 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~---~~~l~~~L~~~~ 561 (747)
+..+.. +.+ .........+.+.++......+ ..+..++... +.++||||++... |+.+++.|...|
T Consensus 289 --~~~~l~-f~v--~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-----g~~gIVF~~t~~~~e~ae~la~~L~~~G 357 (1638)
T PRK14701 289 --YRELLG-FEV--GSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-----GKGGLIFVPIDEGAEKAEEIEKYLLEDG 357 (1638)
T ss_pred --hhcCeE-EEe--cCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-----CCCeEEEEeccccchHHHHHHHHHHHCC
Confidence 222222 222 1223344567777766544433 3455555432 3489999999875 589999999999
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcCCccEEEee----CCcccccCCCC-ccEEEEeCCCC---ChhhHHHhh--------
Q 004518 562 LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS----DVSARGVDYPD-VTLVIQVGLPS---DREQYIHRL-------- 625 (747)
Q Consensus 562 ~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT----~v~~~GiDip~-V~~VI~~d~p~---s~~~y~Qr~-------- 625 (747)
+++..+||+ |..+++.|++|+..||||| ++++||||+|+ |++|||||+|. +...|.|..
T Consensus 358 i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~ 432 (1638)
T PRK14701 358 FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLS 432 (1638)
T ss_pred CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchH
Confidence 999999995 8899999999999999999 58999999999 99999999999 888776665
Q ss_pred -----ccCCCCCCcceEEEEeCcchHHHHH
Q 004518 626 -----GRTGRKGKEGQGILLLAPWEEFFLS 650 (747)
Q Consensus 626 -----GRagR~G~~G~~~~l~s~~e~~~l~ 650 (747)
||+||.|.++.++..+...+..+++
T Consensus 433 ~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 433 EILKIEEELKEGIPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred HHHHhhhhcccCCcchhHHHhHHHHHHHHH
Confidence 9999999988888666665555444
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-34 Score=326.92 Aligned_cols=322 Identities=21% Similarity=0.224 Sum_probs=239.7
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
-.|+++|..+++.++.|+ |+.+.||+|||++|.+|++...+. +..++|++||++||.|.++++..++
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 368999999999999998 999999999999999999987653 3359999999999999999999999
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccccc----------------------cccCCCcc
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGF----------------------ATRLMGVK 436 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~----------------------~~~L~~i~ 436 (747)
.+. ++++.+++||.+.. .++.. .+++|+|+|..-| .++|...... ......+.
T Consensus 169 ~~l-Glsv~~i~gg~~~~--~r~~~-y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 169 EAL-GLTVGCVVEDQSPD--ERRAA-YGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred hhc-CCEEEEEeCCCCHH--HHHHH-cCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 876 89999999997643 33332 3589999999877 4454332110 11235688
Q ss_pred EEEEeCCcccc-CCC-----------------cHHHHHHHHHHC--------------------------------C---
Q 004518 437 VLVLDEADHLL-DMG-----------------FRKDIEKIIAAV--------------------------------P--- 463 (747)
Q Consensus 437 ~vIiDEAh~ll-~~~-----------------f~~~l~~il~~~--------------------------------~--- 463 (747)
++||||||.++ |.. +......+...+ +
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 99999999753 110 000000000000 0
Q ss_pred ---------------------CC---------------------------------------------------------
Q 004518 464 ---------------------KQ--------------------------------------------------------- 465 (747)
Q Consensus 464 ---------------------~~--------------------------------------------------------- 465 (747)
.+
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 00
Q ss_pred ----CeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEE
Q 004518 466 ----RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVL 541 (747)
Q Consensus 466 ----~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~L 541 (747)
.++.+||||++.+..++...+... +..+... .+. .....+.++.+....|...+...+..... .+.++|
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~-vv~IPt~---kp~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~--~~~pvL 477 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLP-VVRIPTN---RPS-QRRHLPDEVFLTAAAKWAAVAARVRELHA--QGRPVL 477 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCC-eEEeCCC---CCc-cceecCCEEEeCHHHHHHHHHHHHHHHHh--cCCCEE
Confidence 256799999988777777766543 3333221 111 22233445556666778888777766432 235799
Q ss_pred EEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCC---Ccc-----EEEEeC
Q 004518 542 VFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP---DVT-----LVIQVG 613 (747)
Q Consensus 542 VF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip---~V~-----~VI~~d 613 (747)
|||+|+..++.++..|...++.+..|||.+.+ |.+.+..|..+...|+||||+|+||+||+ +|. +||+|+
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 99999999999999999999999999998665 55555556666667999999999999999 776 999999
Q ss_pred CCCChhhHHHhhccCCCCCCcceEEEEeCcchHH
Q 004518 614 LPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEF 647 (747)
Q Consensus 614 ~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~ 647 (747)
+|.+...|+||+|||||.|.+|.|+.|++..|.-
T Consensus 556 ~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 9999999999999999999999999999986643
No 63
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.4e-35 Score=352.29 Aligned_cols=320 Identities=19% Similarity=0.194 Sum_probs=227.3
Q ss_pred HHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCc
Q 004518 306 QEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSI 385 (747)
Q Consensus 306 Q~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 385 (747)
..+++..+.+++.+||+|+||||||+ ++|.+ ++..+.. ...+|+++.|+|..|..++..+.+......+-
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~--lle~~~~------~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~ 141 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTT--QLPKI--CLELGRG------SHGLIGHTQPRRLAARTVAQRIAEELGTPLGE 141 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHH--HHHHH--HHHcCCC------CCceEecCCccHHHHHHHHHHHHHHhCCCcce
Confidence 35677888889999999999999999 67843 3333211 12468899999999999998777665432222
Q ss_pred eEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc-cccCCCcHHH-HHHHHHHCC
Q 004518 386 GVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD-HLLDMGFRKD-IEKIIAAVP 463 (747)
Q Consensus 386 ~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh-~ll~~~f~~~-l~~il~~~~ 463 (747)
.++..+...+.. ..++.|+|+|+|+|++.+..+ ..|.++++||||||| ++++.+|... +..++.. .
T Consensus 142 ~VGY~vR~~~~~-------s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-r 209 (1283)
T TIGR01967 142 KVGYKVRFHDQV-------SSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-R 209 (1283)
T ss_pred EEeeEEcCCccc-------CCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhh-C
Confidence 333322222111 234799999999999999876 347899999999999 5888887765 4555443 4
Q ss_pred CCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc------ccchHHHHHHHHHHhhcCCC
Q 004518 464 KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL------DLHFPLLYVLLREHVADNPE 537 (747)
Q Consensus 464 ~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~ 537 (747)
++.|+|+||||++.+ .+.+.+. +. +++.+... . ..+...|..... ......+..++...+.. ..
T Consensus 210 pdLKlIlmSATld~~--~fa~~F~-~a-pvI~V~Gr----~-~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~ 279 (1283)
T TIGR01967 210 PDLKIIITSATIDPE--RFSRHFN-NA-PIIEVSGR----T-YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GP 279 (1283)
T ss_pred CCCeEEEEeCCcCHH--HHHHHhc-CC-CEEEECCC----c-ccceeEEecccccccchhhhHHHHHHHHHHHHHhh-CC
Confidence 578999999999753 4444443 22 23332211 1 123333332211 11233444455544433 45
Q ss_pred CeEEEEecchhHHHHHHHHHHhcc---ccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCC
Q 004518 538 YKVLVFCTTAMVTRMVADLLGELK---LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGL 614 (747)
Q Consensus 538 ~k~LVF~~s~~~~~~l~~~L~~~~---~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~ 614 (747)
+.+|||+++..+++.+++.|.+.+ +.+.++||.|++.+|.+++..+ +..+||||||++++|||||+|++||++|+
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCC
Confidence 799999999999999999998764 4589999999999999997754 34799999999999999999999999995
Q ss_pred C------------------CChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCccC
Q 004518 615 P------------------SDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKA 660 (747)
Q Consensus 615 p------------------~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~~ 660 (747)
+ .|.++|.||+|||||.| +|.||.||+..+..-+.....++|.+.
T Consensus 358 ~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~~~~~PEIlR~ 420 (1283)
T TIGR01967 358 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRPEFTDPEILRT 420 (1283)
T ss_pred ccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhhhccCcccccc
Confidence 4 36689999999999997 999999999876544444444555443
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.3e-34 Score=315.57 Aligned_cols=302 Identities=19% Similarity=0.199 Sum_probs=206.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchH
Q 004518 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~ 397 (747)
+++++||||||||++|++|++..+.+.. +.+++|++|+++|+.|+++.+..++.. .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHH
Confidence 5899999999999999999998764321 346999999999999999999987542 233333332210
Q ss_pred ------------HHHHHHhc-----CCCcEEEECchhHHHHHHccc-cccccC--CCccEEEEeCCccccCCCcHHHHHH
Q 004518 398 ------------LEQKRMQA-----NPCQILVATPGRLRDHIENTA-GFATRL--MGVKVLVLDEADHLLDMGFRKDIEK 457 (747)
Q Consensus 398 ------------~~~~~l~~-----~~~~IlV~Tpg~Ll~~l~~~~-~~~~~L--~~i~~vIiDEAh~ll~~~f~~~l~~ 457 (747)
........ ...+|+|+||+.++..+.... .....+ ...++|||||||.+.++++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 00001101 125799999999988776521 111111 234899999999999765433 555
Q ss_pred HHHHCC-CCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEe--cCcccchHHHHHHHHHHhhc
Q 004518 458 IIAAVP-KQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV--APLDLHFPLLYVLLREHVAD 534 (747)
Q Consensus 458 il~~~~-~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~--~~~~~k~~~l~~~l~~~~~~ 534 (747)
++..+. ...|+++||||+|..+..++......... . .... ........+.+.. .....+...+..++...
T Consensus 147 ~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--- 219 (358)
T TIGR01587 147 VLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFN-E-PLDL--KEERRFERHRFIKIESDKVGEISSLERLLEFI--- 219 (358)
T ss_pred HHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccc-c-CCCC--ccccccccccceeeccccccCHHHHHHHHHHh---
Confidence 554443 46899999999997776665544321100 0 0000 0000011122211 12233455555555332
Q ss_pred CCCCeEEEEecchhHHHHHHHHHHhccc--cceeccCCCCHHHHHH----HHHHHhcCCccEEEeeCCcccccCCCCccE
Q 004518 535 NPEYKVLVFCTTAMVTRMVADLLGELKL--NVREIHSRKPQSYRTR----VSDEFRKSKGLILVTSDVSARGVDYPDVTL 608 (747)
Q Consensus 535 ~~~~k~LVF~~s~~~~~~l~~~L~~~~~--~v~~lh~~l~~~eR~~----v~~~F~~g~~~VLvaT~v~~~GiDip~V~~ 608 (747)
..++++||||+++..++.+++.|++.+. .+..+||++++.+|.+ +++.|++|...|||||+++++|+||+ +++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCE
Confidence 2346999999999999999999988765 4999999999999976 48999999999999999999999995 899
Q ss_pred EEEeCCCCChhhHHHhhccCCCCCCc----ceEEEEeCc
Q 004518 609 VIQVGLPSDREQYIHRLGRTGRKGKE----GQGILLLAP 643 (747)
Q Consensus 609 VI~~d~p~s~~~y~Qr~GRagR~G~~----G~~~~l~s~ 643 (747)
||++..| +.+|+||+||+||.|+. |.++++...
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 9998776 78999999999999853 356666643
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-33 Score=297.43 Aligned_cols=328 Identities=22% Similarity=0.269 Sum_probs=238.7
Q ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.-+++.+|..+....+.+ +++|+.|||-|||+++.+-+.+.+.+.+ + ++|+++||+-|+.|.++.+.+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHHHH
Confidence 446788999988777665 8999999999999998888888875432 3 6999999999999999999988
Q ss_pred hhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHH
Q 004518 379 LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458 (747)
Q Consensus 379 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~i 458 (747)
+.. |.-.+..++|..........+. ..+|+|+||..+.+-|..+. ..+.++.++|+||||+-...--.-.+.+.
T Consensus 82 ~~i-p~~~i~~ltGev~p~~R~~~w~--~~kVfvaTPQvveNDl~~Gr---id~~dv~~lifDEAHRAvGnyAYv~Va~~ 155 (542)
T COG1111 82 TGI-PEDEIAALTGEVRPEEREELWA--KKKVFVATPQVVENDLKAGR---IDLDDVSLLIFDEAHRAVGNYAYVFVAKE 155 (542)
T ss_pred hCC-ChhheeeecCCCChHHHHHHHh--hCCEEEeccHHHHhHHhcCc---cChHHceEEEechhhhccCcchHHHHHHH
Confidence 764 3445667777666543333332 36999999999998887763 66889999999999987643322333333
Q ss_pred HHHCCCCCeEEEEeccCChHHHHHHHHHhcCC----------------------ceeee---------------------
Q 004518 459 IAAVPKQRQTLLFSATVPEEVRQICHIALKRD----------------------HEFIN--------------------- 495 (747)
Q Consensus 459 l~~~~~~~q~il~SATl~~~v~~l~~~~~~~~----------------------~~~i~--------------------- 495 (747)
.....++..+++||||+..+...+....-... ..++.
T Consensus 156 y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 156 YLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred HHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 33445667799999998654443311100000 00000
Q ss_pred -----------eccC------------------C-ccccc---------------------ccee---EE----------
Q 004518 496 -----------TVEE------------------G-SEETH---------------------EQVR---QM---------- 511 (747)
Q Consensus 496 -----------~~~~------------------~-~~~~~---------------------~~i~---~~---------- 511 (747)
.... . ..... ..+. ++
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 0000 0 00000 0000 00
Q ss_pred -------------------------EEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccce-
Q 004518 512 -------------------------HLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVR- 565 (747)
Q Consensus 512 -------------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~- 565 (747)
.......-|+..+..++...+.+..+.++|||++.+.+++.+.++|.+.+..+.
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~ 395 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV 395 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee
Confidence 000001124455666777777777778999999999999999999999888774
Q ss_pred ec--------cCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceE
Q 004518 566 EI--------HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQG 637 (747)
Q Consensus 566 ~l--------h~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~ 637 (747)
.+ ..+|+|++|..+++.|++|...|||||++++.|||||.|++||+|++..|+..++||.|||||. +.|.+
T Consensus 396 rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred EEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 22 3579999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred EEEeCcc
Q 004518 638 ILLLAPW 644 (747)
Q Consensus 638 ~~l~s~~ 644 (747)
++|++..
T Consensus 475 ~vLvt~g 481 (542)
T COG1111 475 VVLVTEG 481 (542)
T ss_pred EEEEecC
Confidence 9999875
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.2e-34 Score=325.01 Aligned_cols=310 Identities=15% Similarity=0.127 Sum_probs=220.2
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
..|+++|.++++.++.++++++++|||+|||+++...+ ..+.... ..++|||+||++|+.|+.+.+.+++
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~---------~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENY---------EGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcC---------CCeEEEEECcHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999754422 2222221 2259999999999999999999876
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHH
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il 459 (747)
... ...+..+.+|.... ...+|+|+||+.|.+.... .+.++++||+||||++... .+..++
T Consensus 183 ~~~-~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~~------~~~~~~~iIvDEaH~~~~~----~~~~il 243 (501)
T PHA02558 183 LFP-REAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPKE------WFDQFGMVIVDECHLFTGK----SLTSII 243 (501)
T ss_pred ccc-ccceeEEecCcccC--------CCCCEEEeeHHHHhhchhh------hccccCEEEEEchhcccch----hHHHHH
Confidence 432 33454556665422 2369999999998765421 2578999999999998864 355666
Q ss_pred HHCCCCCeEEEEeccCChHHHHHHH--HHhcCCceeeeeccCC--cccc-ccceeEEE---------------------E
Q 004518 460 AAVPKQRQTLLFSATVPEEVRQICH--IALKRDHEFINTVEEG--SEET-HEQVRQMH---------------------L 513 (747)
Q Consensus 460 ~~~~~~~q~il~SATl~~~v~~l~~--~~~~~~~~~i~~~~~~--~~~~-~~~i~~~~---------------------~ 513 (747)
..+++.+++++||||+......... ..+. +.......... .... ...+.... .
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HhhhccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 7777778999999998653221111 1111 10000000000 0000 00000000 0
Q ss_pred ecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEe
Q 004518 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593 (747)
Q Consensus 514 ~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLva 593 (747)
......+...+..++.... ..+.++||||.+.++++.+++.|+..++++..+||.+++.+|..+++.|++|...||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 1112223334444444433 23458999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEe
Q 004518 594 S-DVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLL 641 (747)
Q Consensus 594 T-~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~ 641 (747)
| +++++|+|+|++++||++.++.+...|+||+||++|.+..+....++
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 8 89999999999999999999999999999999999997555444444
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3e-33 Score=323.02 Aligned_cols=325 Identities=18% Similarity=0.229 Sum_probs=235.2
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
+|+ .|+++|..+++.++.|+ |+++.||+|||++|.+|++...+.. ..|+|++||++||.|.++++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 455 79999999999988876 9999999999999999998666543 349999999999999999999
Q ss_pred HHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccc---cccccCCCccEEEEeCCcccc-CC--
Q 004518 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTA---GFATRLMGVKVLVLDEADHLL-DM-- 449 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~---~~~~~L~~i~~vIiDEAh~ll-~~-- 449 (747)
.++.+. ++++.+++|+.+...+.+.. ..++|+|+||+.| .++|.... .....+..+.++||||||.|+ |.
T Consensus 141 ~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 141 QVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 999987 89999999998854333333 3489999999999 45554321 111346789999999999865 21
Q ss_pred -------------CcHHHHHHHHHHCCC--------C-------------------------------------------
Q 004518 450 -------------GFRKDIEKIIAAVPK--------Q------------------------------------------- 465 (747)
Q Consensus 450 -------------~f~~~l~~il~~~~~--------~------------------------------------------- 465 (747)
.....+..+...+.. .
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 011112122221111 0
Q ss_pred ------------------------------------------------------------------CeEEEEeccCChHH
Q 004518 466 ------------------------------------------------------------------RQTLLFSATVPEEV 479 (747)
Q Consensus 466 ------------------------------------------------------------------~q~il~SATl~~~v 479 (747)
.++.+||.|...+-
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 13445555543333
Q ss_pred HHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHh
Q 004518 480 RQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGE 559 (747)
Q Consensus 480 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~ 559 (747)
.++...|.. .++.+ +...+...... ...+......|...+...+..... .+.++||||+|+..++.++..|.+
T Consensus 378 ~e~~~~Y~l---~v~~I-Pt~kp~~r~d~-~~~i~~~~~~K~~al~~~i~~~~~--~~~pvLIf~~t~~~se~l~~~L~~ 450 (790)
T PRK09200 378 KEFFEVYNM---EVVQI-PTNRPIIRIDY-PDKVFVTLDEKYKAVIEEVKERHE--TGRPVLIGTGSIEQSETFSKLLDE 450 (790)
T ss_pred HHHHHHhCC---cEEEC-CCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHH
Confidence 333222211 11111 11111111011 112233445567777776655322 356999999999999999999999
Q ss_pred ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCC---CCcc-----EEEEeCCCCChhhHHHhhccCCCC
Q 004518 560 LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDY---PDVT-----LVIQVGLPSDREQYIHRLGRTGRK 631 (747)
Q Consensus 560 ~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDi---p~V~-----~VI~~d~p~s~~~y~Qr~GRagR~ 631 (747)
.++++..+||.+.+.++..+...+..| .|+||||+|+||+|| |+|. +||+|++|.+...|+||+|||||.
T Consensus 451 ~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 451 AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 999999999999999988888887776 699999999999999 7999 999999999999999999999999
Q ss_pred CCcceEEEEeCcchHH
Q 004518 632 GKEGQGILLLAPWEEF 647 (747)
Q Consensus 632 G~~G~~~~l~s~~e~~ 647 (747)
|.+|.|+.|++..|.-
T Consensus 529 G~~G~s~~~is~eD~l 544 (790)
T PRK09200 529 GDPGSSQFFISLEDDL 544 (790)
T ss_pred CCCeeEEEEEcchHHH
Confidence 9999999999986643
No 68
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=313.33 Aligned_cols=323 Identities=18% Similarity=0.219 Sum_probs=238.5
Q ss_pred CcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhh
Q 004518 302 MTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKY 381 (747)
Q Consensus 302 ~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 381 (747)
.+.+-.+++..+.+++.+||.|+||||||+ ++| +.|++.+... ..++.|++|+|..|..++.++.+-...
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~~~------~g~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGFAS------SGKIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhccccc------CCcEEeecCchHHHHHHHHHHHHHhCC
Confidence 345567889999999999999999999999 888 8888777643 234999999999999999876655433
Q ss_pred C--CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcccc-CCCcH-HHHHH
Q 004518 382 H--PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFR-KDIEK 457 (747)
Q Consensus 382 ~--~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll-~~~f~-~~l~~ 457 (747)
. ..+.+.+.+..... ..+.|.++|.|.|++.+..+ ..|+++++|||||||+-. ..+.. -.+.+
T Consensus 122 ~lG~~VGY~IRFed~ts---------~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~TDiLlGlLKk 188 (674)
T KOG0922|consen 122 QLGEEVGYTIRFEDSTS---------KDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLHTDILLGLLKK 188 (674)
T ss_pred CcCceeeeEEEecccCC---------CceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhHHHHHHHHHHH
Confidence 2 23555666665542 33799999999999999887 568999999999999643 22222 22333
Q ss_pred HHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccch-HHHHHHHHHHhhcCC
Q 004518 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF-PLLYVLLREHVADNP 536 (747)
Q Consensus 458 il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~~l~~~~~~~~ 536 (747)
++ ..+++.++|+||||+..+ .+..++.+ .+++.+.. -...+..+|...+..+-. ..+..++.-+ ...+
T Consensus 189 i~-~~R~~LklIimSATlda~---kfS~yF~~-a~i~~i~G-----R~fPVei~y~~~p~~dYv~a~~~tv~~Ih-~~E~ 257 (674)
T KOG0922|consen 189 IL-KKRPDLKLIIMSATLDAE---KFSEYFNN-APILTIPG-----RTFPVEILYLKEPTADYVDAALITVIQIH-LTEP 257 (674)
T ss_pred HH-hcCCCceEEEEeeeecHH---HHHHHhcC-CceEeecC-----CCCceeEEeccCCchhhHHHHHHHHHHHH-ccCC
Confidence 33 334568899999999855 34455543 23333321 112444555544443333 3344444434 4467
Q ss_pred CCeEEEEecchhHHHHHHHHHHhc----c----ccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccE
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGEL----K----LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTL 608 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~~----~----~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~ 608 (747)
++-+|||++++++++.++..|.+. + .-++++||.|+.+++.++|..-+.|.++|+++||+|+++|+||||.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~Y 337 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRY 337 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEE
Confidence 789999999999999999999775 1 13578999999999999999999999999999999999999999999
Q ss_pred EEEeCC------------------CCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCcc
Q 004518 609 VIQVGL------------------PSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILK 659 (747)
Q Consensus 609 VI~~d~------------------p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~ 659 (747)
||+.|. |-|.++..||+|||||.| +|.||.+|+..+...+..-..++|.+
T Consensus 338 VVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~~~~~~PEI~R 405 (674)
T KOG0922|consen 338 VVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKMPLQTVPEIQR 405 (674)
T ss_pred EEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhcccCCCCceee
Confidence 997654 458889999999999997 99999999987765443333344443
No 69
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-34 Score=336.84 Aligned_cols=332 Identities=22% Similarity=0.266 Sum_probs=253.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 004518 294 IKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373 (747)
Q Consensus 294 l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 373 (747)
...+|...+++-|.++|..++.|+|++|.+|||.||++||++|++-. ++..|||.|..+|+..+..
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999997632 2358999999999998877
Q ss_pred HHHHHhhhCCCceEEEEeCCcchHH---HHHHHhcC--CCcEEEECchhHHHHHHccccccccCCC---ccEEEEeCCcc
Q 004518 374 EASTLLKYHPSIGVQVVIGGTRLAL---EQKRMQAN--PCQILVATPGRLRDHIENTAGFATRLMG---VKVLVLDEADH 445 (747)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~gg~~~~~---~~~~l~~~--~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~---i~~vIiDEAh~ 445 (747)
.+... ++....+.++..... ....+..+ .++|++.||+++.....-. .....|.. +.++||||||+
T Consensus 323 ~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 323 HLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred hhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHHH
Confidence 66432 677777777766542 23344445 5799999999885322111 01123444 88999999999
Q ss_pred ccCCC--cHHHHHHHHHH--CCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccch
Q 004518 446 LLDMG--FRKDIEKIIAA--VPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF 521 (747)
Q Consensus 446 ll~~~--f~~~l~~il~~--~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~ 521 (747)
.+.|+ |+..+..+... ..+...+|.+|||.+..+..-+-..+......+.... ....++.. .+..... +
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s----fnR~NL~y-eV~~k~~-~- 469 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS----FNRPNLKY-EVSPKTD-K- 469 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc----CCCCCceE-EEEeccC-c-
Confidence 99998 88877766332 2234789999999999988776665544333222111 11112221 1111111 1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCccccc
Q 004518 522 PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGV 601 (747)
Q Consensus 522 ~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~Gi 601 (747)
..+..++.......+...+||||.++.+|+.++..|++.++....||++|+.++|..|...|..++++|+|||-++++||
T Consensus 470 ~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGI 549 (941)
T KOG0351|consen 470 DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGI 549 (941)
T ss_pred cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCC
Confidence 11222222222334566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHh
Q 004518 602 DYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 602 Dip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l 652 (747)
|.|+|+.||||.+|.+.+.|.|-+|||||.|.+..|++||...|...+..+
T Consensus 550 dK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 550 DKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred CCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999887666554
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.1e-32 Score=315.28 Aligned_cols=322 Identities=15% Similarity=0.172 Sum_probs=223.9
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.|+++|......+ ++..|++++||+|||++|++|++...+.. ..++|++|+++||.|+++++..++.
T Consensus 70 rpydVQlig~l~l--~~G~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVL--HQGNIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHh--cCCceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHh
Confidence 4455555444444 44579999999999999999987776532 2399999999999999999999988
Q ss_pred hCCCceEEEEeCCcc---hHHHHHHHhcCCCcEEEECchhH-HHHHHcc---ccccccCCCccEEEEeCCccccCCC---
Q 004518 381 YHPSIGVQVVIGGTR---LALEQKRMQANPCQILVATPGRL-RDHIENT---AGFATRLMGVKVLVLDEADHLLDMG--- 450 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~---~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~---~~~~~~L~~i~~vIiDEAh~ll~~~--- 450 (747)
+. ++++.+++++.. ...+..+.. .+++|+|+||+.| .+++... ......++.+.++||||||.|+-..
T Consensus 137 ~L-GLsv~~~~~~s~~~~~~~~~rr~~-y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeart 214 (762)
T TIGR03714 137 WL-GLTVSLGVVDDPDEEYDANEKRKI-YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQT 214 (762)
T ss_pred hc-CCcEEEEECCCCccccCHHHHHHh-CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcC
Confidence 87 888888776522 222233332 4589999999999 4555321 1111346789999999999974210
Q ss_pred -------------cHHHHHHHHHHCCCC----------------------------------------------------
Q 004518 451 -------------FRKDIEKIIAAVPKQ---------------------------------------------------- 465 (747)
Q Consensus 451 -------------f~~~l~~il~~~~~~---------------------------------------------------- 465 (747)
+...+..+...+...
T Consensus 215 pliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 215 PLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred CeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 111111122211110
Q ss_pred -----------------------------------------------------------------CeEEEEeccCChHHH
Q 004518 466 -----------------------------------------------------------------RQTLLFSATVPEEVR 480 (747)
Q Consensus 466 -----------------------------------------------------------------~q~il~SATl~~~v~ 480 (747)
.++.+||.|...+-.
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~ 374 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEK 374 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHH
Confidence 234556666544444
Q ss_pred HHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc
Q 004518 481 QICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL 560 (747)
Q Consensus 481 ~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~ 560 (747)
++...|-. + ++.+ +...+..... ....+......|...+...+..... .+.++||||+|+..++.++..|.+.
T Consensus 375 Ef~~iY~l-~--v~~I-Pt~kp~~r~d-~~d~i~~~~~~K~~ai~~~i~~~~~--~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 375 EFIETYSL-S--VVKI-PTNKPIIRID-YPDKIYATLPEKLMATLEDVKEYHE--TGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHhCC-C--EEEc-CCCCCeeeee-CCCeEEECHHHHHHHHHHHHHHHhh--CCCCEEEEECcHHHHHHHHHHHHHC
Confidence 44333211 1 1111 1111100000 0112344455677777776665433 3458999999999999999999999
Q ss_pred cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCC---------CccEEEEeCCCCChhhHHHhhccCCCC
Q 004518 561 KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP---------DVTLVIQVGLPSDREQYIHRLGRTGRK 631 (747)
Q Consensus 561 ~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip---------~V~~VI~~d~p~s~~~y~Qr~GRagR~ 631 (747)
++++..+|+.+.+.++..+...++.| .|+||||+|+||+||+ ++.+|++|+.|..... +||+|||||.
T Consensus 448 gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq 524 (762)
T TIGR03714 448 GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ 524 (762)
T ss_pred CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC
Confidence 99999999999999988888877777 6999999999999999 9999999999988766 9999999999
Q ss_pred CCcceEEEEeCcchHH
Q 004518 632 GKEGQGILLLAPWEEF 647 (747)
Q Consensus 632 G~~G~~~~l~s~~e~~ 647 (747)
|.+|.++.|++..|.-
T Consensus 525 G~~G~s~~~is~eD~l 540 (762)
T TIGR03714 525 GDPGSSQFFVSLEDDL 540 (762)
T ss_pred CCceeEEEEEccchhh
Confidence 9999999999986643
No 71
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-34 Score=308.88 Aligned_cols=334 Identities=19% Similarity=0.212 Sum_probs=251.7
Q ss_pred CCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 298 GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 298 g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
.....+++-.+.+.++..++.+||.|+||||||+ ++| |.|++.+...+ +.++.|++|+|..|..++.++.+
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGytk~-----gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYTKG-----GKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcccccC-----CceEeecCcchHHHHHHHHHHHH
Confidence 3445678889999999999999999999999999 888 88888876432 34599999999999999886655
Q ss_pred HhhhC--CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcc-ccCCCcHHH
Q 004518 378 LLKYH--PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADH-LLDMGFRKD 454 (747)
Q Consensus 378 l~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~-ll~~~f~~~ 454 (747)
-.... ..+.+.+.+.+... ..+-|.++|.|+|++.+... ..|.++++|||||||. -+..+..--
T Consensus 333 EMgvkLG~eVGYsIRFEdcTS---------ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfg 399 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTS---------EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFG 399 (902)
T ss_pred HhCcccccccceEEEeccccC---------cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHH
Confidence 43221 12444555544432 23688999999999998876 5688999999999995 344443333
Q ss_pred HHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhc
Q 004518 455 IEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVAD 534 (747)
Q Consensus 455 l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 534 (747)
+.+-+....++.+++++|||+..+ -+..++...+.+ .+. .-...+.-+|...+...-+...+..+.++...
T Consensus 400 LvKDIar~RpdLKllIsSAT~DAe---kFS~fFDdapIF-~iP-----GRRyPVdi~Yt~~PEAdYldAai~tVlqIH~t 470 (902)
T KOG0923|consen 400 LVKDIARFRPDLKLLISSATMDAE---KFSAFFDDAPIF-RIP-----GRRYPVDIFYTKAPEADYLDAAIVTVLQIHLT 470 (902)
T ss_pred HHHHHHhhCCcceEEeeccccCHH---HHHHhccCCcEE-ecc-----CcccceeeecccCCchhHHHHHHhhheeeEec
Confidence 444455667899999999999865 334555533333 221 11224444555555544455444445555555
Q ss_pred CCCCeEEEEecchhHHHHHHHHHHhc---------cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCC
Q 004518 535 NPEYKVLVFCTTAMVTRMVADLLGEL---------KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD 605 (747)
Q Consensus 535 ~~~~k~LVF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~ 605 (747)
.+.+-+|||.+++.+++.+...|... .+-+++||+.++...+.+||+.-++|.++|++|||+|+++|+|++
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecC
Confidence 67789999999999999888777653 356899999999999999999999999999999999999999999
Q ss_pred ccEEEEeCC------------------CCChhhHHHhhccCCCCCCcceEEEEeCcch-HHHHHHhhhCCCccCCCC
Q 004518 606 VTLVIQVGL------------------PSDREQYIHRLGRTGRKGKEGQGILLLAPWE-EFFLSTIKDLPILKAPVP 663 (747)
Q Consensus 606 V~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e-~~~l~~l~~~~i~~~~~~ 663 (747)
|.+||+-|. |-|.++..||+|||||.| +|.|+.||+.|- ...++....++|.+.++.
T Consensus 551 I~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~ 626 (902)
T KOG0923|consen 551 IKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAYEHELEEMTVPEIQRTNLG 626 (902)
T ss_pred eEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhhhhhhccCCCcceeeccch
Confidence 999996553 457888999999999998 999999999877 455666666777776653
No 72
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-33 Score=326.69 Aligned_cols=327 Identities=21% Similarity=0.261 Sum_probs=245.2
Q ss_pred CcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhh
Q 004518 302 MTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKY 381 (747)
Q Consensus 302 ~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 381 (747)
.+....+++.++.+++.+||+|+||||||+ ++| +.++..+. ..+.+++++.|+|..|..+++.+.+....
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTT--qlP--~~lle~g~------~~~g~I~~tQPRRlAArsvA~RvAeel~~ 120 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTT--QLP--QFLLEEGL------GIAGKIGCTQPRRLAARSVAERVAEELGE 120 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHH--HHH--HHHHhhhc------ccCCeEEecCchHHHHHHHHHHHHHHhCC
Confidence 355667888899999999999999999999 666 55555543 22346999999999999999988877665
Q ss_pred CCC--ceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccc-cCCCcHHH-HHH
Q 004518 382 HPS--IGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHL-LDMGFRKD-IEK 457 (747)
Q Consensus 382 ~~~--~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~l-l~~~f~~~-l~~ 457 (747)
..+ +.+.+.+.... ...+.|.|+|.|.|++.++.+ ..|+.+++|||||||+- ++.++.-- +..
T Consensus 121 ~~G~~VGY~iRfe~~~---------s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~ 187 (845)
T COG1643 121 KLGETVGYSIRFESKV---------SPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKD 187 (845)
T ss_pred CcCceeeEEEEeeccC---------CCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHH
Confidence 444 34444444333 234799999999999999987 56899999999999954 45554433 344
Q ss_pred HHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEE-ecCccc-chHHHHHHHHHHhhcC
Q 004518 458 IIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL-VAPLDL-HFPLLYVLLREHVADN 535 (747)
Q Consensus 458 il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~-~~~~~~-k~~~l~~~l~~~~~~~ 535 (747)
++...+.+.++|+||||+..+- +..++.+ .+++.+... + ..+...|. ....+. -...+...+..+...
T Consensus 188 ~~~~rr~DLKiIimSATld~~r---fs~~f~~-apvi~i~GR----~-fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~- 257 (845)
T COG1643 188 LLARRRDDLKLIIMSATLDAER---FSAYFGN-APVIEIEGR----T-YPVEIRYLPEAEADYILLDAIVAAVDIHLRE- 257 (845)
T ss_pred HHhhcCCCceEEEEecccCHHH---HHHHcCC-CCEEEecCC----c-cceEEEecCCCCcchhHHHHHHHHHHHhccC-
Confidence 5677777899999999998763 3344443 334433211 1 13333332 222333 344555555555444
Q ss_pred CCCeEEEEecchhHHHHHHHHHHh----ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEE
Q 004518 536 PEYKVLVFCTTAMVTRMVADLLGE----LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQ 611 (747)
Q Consensus 536 ~~~k~LVF~~s~~~~~~l~~~L~~----~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~ 611 (747)
..+.+|||+|+..++..+++.|.+ ..+.++++||.|+.+++.++|+.-..|+++|++|||+|+++|+||+|++||+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 467999999999999999999997 3578999999999999999999999998999999999999999999999997
Q ss_pred eCC------------------CCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhhhCCCccCCC
Q 004518 612 VGL------------------PSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPILKAPV 662 (747)
Q Consensus 612 ~d~------------------p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~~~~i~~~~~ 662 (747)
.+. |.|.++..||.|||||.+ +|.||.+|+..+..-+.....++|.+.++
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~~~~~t~PEIlrtdL 405 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFLAFPEFTLPEILRTDL 405 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHHhcccCCChhhhhcch
Confidence 665 347889999999999996 99999999986655555555566665544
No 73
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=297.52 Aligned_cols=282 Identities=26% Similarity=0.413 Sum_probs=209.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhhC--CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccC
Q 004518 355 PILVLVICPTRELATQAATEASTLLKYH--PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRL 432 (747)
Q Consensus 355 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L 432 (747)
.+.++|+-|.|+||.|.++.++++-.+. |.++..+.+||.....+...+. .+.+|+|+||++|++.+.++ ...|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~-~g~~ivvGtpgRl~~~is~g---~~~l 361 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLK-DGTHIVVGTPGRLLQPISKG---LVTL 361 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhh-cCceeeecCchhhhhhhhcc---ceee
Confidence 3679999999999999999888876543 4455557888887766666654 55899999999999999876 3568
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCC------CCeEEEEeccCC-hHHHHHHHHHhcCCceeeeeccCCccccc
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPK------QRQTLLFSATVP-EEVRQICHIALKRDHEFINTVEEGSEETH 505 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~------~~q~il~SATl~-~~v~~l~~~~~~~~~~~i~~~~~~~~~~~ 505 (747)
..+.++|+||||.++..++-+.+..+...+|. ..|.+++|||+. -++..+....++ .+.++....+ ....
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmh-fptwVdLkge--D~vp 438 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMH-FPTWVDLKGE--DLVP 438 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhcc-CceeEecccc--cccc
Confidence 88999999999999988888877777666653 579999999984 233444444443 2333322111 1111
Q ss_pred cceeEEEEecCcc------------------------------cchHHHHHHHH-----HHhhcCCCCeEEEEecchhHH
Q 004518 506 EQVRQMHLVAPLD------------------------------LHFPLLYVLLR-----EHVADNPEYKVLVFCTTAMVT 550 (747)
Q Consensus 506 ~~i~~~~~~~~~~------------------------------~k~~~l~~~l~-----~~~~~~~~~k~LVF~~s~~~~ 550 (747)
..+.++...+.+. .....-..+++ ..+.+....++||||.|+.+|
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dc 518 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDC 518 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccc
Confidence 1111111111000 00000011111 011222345899999999999
Q ss_pred HHHHHHHHhc---cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhcc
Q 004518 551 RMVADLLGEL---KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGR 627 (747)
Q Consensus 551 ~~l~~~L~~~---~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GR 627 (747)
+.|.++|++. .+++..+||+..+.+|...++.|..+..+.||||++++|||||.++-++|+..+|.+...|+||+||
T Consensus 519 DnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigr 598 (725)
T KOG0349|consen 519 DNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGR 598 (725)
T ss_pred hHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhc
Confidence 9999999886 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEeCc
Q 004518 628 TGRKGKEGQGILLLAP 643 (747)
Q Consensus 628 agR~G~~G~~~~l~s~ 643 (747)
.||+.+-|.++.++..
T Consensus 599 vgraermglaislvat 614 (725)
T KOG0349|consen 599 VGRAERMGLAISLVAT 614 (725)
T ss_pred cchhhhcceeEEEeec
Confidence 9999999999988753
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8.6e-33 Score=335.90 Aligned_cols=292 Identities=22% Similarity=0.278 Sum_probs=214.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHH
Q 004518 290 SLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT 369 (747)
Q Consensus 290 l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~ 369 (747)
..+.+.......|+++|+.+++.++.|++++++||||+|||+ |.+|++..+... ++++|||+|||+||.
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHH
Confidence 334444444557999999999999999999999999999997 667776665421 356999999999999
Q ss_pred HHHHHHHHHhhhCCCceE---EEEeCCcchHHH---HHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCC
Q 004518 370 QAATEASTLLKYHPSIGV---QVVIGGTRLALE---QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEA 443 (747)
Q Consensus 370 Q~~~~~~~l~~~~~~~~~---~~~~gg~~~~~~---~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEA 443 (747)
|+++.+..++... ++.+ .+++|+.+.... ...+..++++|+|+||++|.+++..- . . +++++|||||
T Consensus 136 Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l----~-~-~~~~iVvDEa 208 (1171)
T TIGR01054 136 QVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL----G-P-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh----c-C-CCCEEEEeCh
Confidence 9999999998654 3333 345677765443 23444566999999999998887642 1 1 7899999999
Q ss_pred ccccC-----------CCcHHH-HHHH----------------------HHHCCCCCe--EEEEecc-CChHHHHHHHHH
Q 004518 444 DHLLD-----------MGFRKD-IEKI----------------------IAAVPKQRQ--TLLFSAT-VPEEVRQICHIA 486 (747)
Q Consensus 444 h~ll~-----------~~f~~~-l~~i----------------------l~~~~~~~q--~il~SAT-l~~~v~~l~~~~ 486 (747)
|+|++ +||... +..+ +..+++.+| ++++||| .|..+.. .+
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l 285 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KL 285 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HH
Confidence 99997 677653 4443 234455555 5678999 4554432 12
Q ss_pred hcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecch---hHHHHHHHHHHhcccc
Q 004518 487 LKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTA---MVTRMVADLLGELKLN 563 (747)
Q Consensus 487 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~---~~~~~l~~~L~~~~~~ 563 (747)
+.... .+.+ ........++.+.+..... +...+..++... +.++||||++. ..++.+++.|...|+.
T Consensus 286 ~r~ll-~~~v--~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~ 355 (1171)
T TIGR01054 286 FRELL-GFEV--GGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-----GTGGIVYVSIDYGKEKAEEIAEFLENHGVK 355 (1171)
T ss_pred ccccc-ceEe--cCccccccceEEEEEeccc--HHHHHHHHHHHc-----CCCEEEEEeccccHHHHHHHHHHHHhCCce
Confidence 22211 1222 1122344566666654332 234455555432 24899999999 9999999999999999
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCccEEEe----eCCcccccCCCC-ccEEEEeCCCC
Q 004518 564 VREIHSRKPQSYRTRVSDEFRKSKGLILVT----SDVSARGVDYPD-VTLVIQVGLPS 616 (747)
Q Consensus 564 v~~lh~~l~~~eR~~v~~~F~~g~~~VLva----T~v~~~GiDip~-V~~VI~~d~p~ 616 (747)
+..+||++++ .+++.|++|+.+|||| |++++||||+|+ |++|||||+|.
T Consensus 356 a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 356 AVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred EEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999973 6899999999999999 499999999999 89999999995
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.1e-32 Score=309.65 Aligned_cols=322 Identities=19% Similarity=0.218 Sum_probs=232.4
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.|+++|..+...++.|+ |+.++||+|||++|.+|++...+.. ..|+|++||++||.|.++++..++.
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC-----------CCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 68999999998888776 9999999999999999996444422 1399999999999999999999998
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccccc---cccCCCccEEEEeCCccccC-CC-----
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGF---ATRLMGVKVLVLDEADHLLD-MG----- 450 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~---~~~L~~i~~vIiDEAh~ll~-~~----- 450 (747)
+. ++++.+++++.+........ .++|+|+||++| .+++..+... ...++.+.++||||||.|+- ..
T Consensus 123 ~L-GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 123 FL-GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred cC-CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 87 79999999998754332222 379999999999 8888654211 13468899999999998652 10
Q ss_pred ----------cHHHHHHHHHHCCC--------C-----------------------------------------------
Q 004518 451 ----------FRKDIEKIIAAVPK--------Q----------------------------------------------- 465 (747)
Q Consensus 451 ----------f~~~l~~il~~~~~--------~----------------------------------------------- 465 (747)
.......+...+.. .
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 00001111111110 0
Q ss_pred --------------------------------------------------------------CeEEEEeccCChHHHHHH
Q 004518 466 --------------------------------------------------------------RQTLLFSATVPEEVRQIC 483 (747)
Q Consensus 466 --------------------------------------------------------------~q~il~SATl~~~v~~l~ 483 (747)
.++.+||.|...+..++.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 134455555544433333
Q ss_pred HHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcccc
Q 004518 484 HIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN 563 (747)
Q Consensus 484 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~ 563 (747)
..|-. + ++.+ +...+...... ...+......|...+...+..... .+.++||||+|...++.+++.|.+.+++
T Consensus 359 ~iY~l-~--vv~I-Ptnkp~~R~d~-~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~gi~ 431 (745)
T TIGR00963 359 KIYNL-E--VVVV-PTNRPVIRKDL-SDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKERGIP 431 (745)
T ss_pred HHhCC-C--EEEe-CCCCCeeeeeC-CCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 33321 1 1111 11101000000 011223334455555555544333 3559999999999999999999999999
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCC-------ccEEEEeCCCCChhhHHHhhccCCCCCCcce
Q 004518 564 VREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD-------VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636 (747)
Q Consensus 564 v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~-------V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~ 636 (747)
+..+|+. +.+|...+..|..+...|+||||+|+||+||+. .-+||+++.|.|...|.|+.|||||.|.+|.
T Consensus 432 ~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 432 HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 9999999 889999999999999999999999999999998 5599999999999999999999999999999
Q ss_pred EEEEeCcchHHH
Q 004518 637 GILLLAPWEEFF 648 (747)
Q Consensus 637 ~~~l~s~~e~~~ 648 (747)
+..|++..|.-+
T Consensus 510 s~~~ls~eD~l~ 521 (745)
T TIGR00963 510 SRFFLSLEDNLM 521 (745)
T ss_pred eEEEEeccHHHH
Confidence 999999877543
No 76
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.6e-32 Score=324.31 Aligned_cols=327 Identities=23% Similarity=0.292 Sum_probs=236.4
Q ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.-+++++|.+++..++.+ ++++++|||+|||+++++++...+.. ++.++|||+||++|+.|+.+.+.++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 346899999999888877 89999999999999999988877631 2346999999999999999999887
Q ss_pred hhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHH
Q 004518 379 LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458 (747)
Q Consensus 379 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~i 458 (747)
+... ...+..+.|+..... ...+.. .++|+|+||+.+...+.... ..+.++++|||||||++........+...
T Consensus 82 ~~~~-~~~v~~~~g~~~~~~-r~~~~~-~~~iiv~T~~~l~~~l~~~~---~~~~~~~liVvDEaH~~~~~~~~~~i~~~ 155 (773)
T PRK13766 82 LNIP-EEKIVVFTGEVSPEK-RAELWE-KAKVIVATPQVIENDLIAGR---ISLEDVSLLIFDEAHRAVGNYAYVYIAER 155 (773)
T ss_pred hCCC-CceEEEEeCCCCHHH-HHHHHh-CCCEEEECHHHHHHHHHcCC---CChhhCcEEEEECCccccccccHHHHHHH
Confidence 6432 346666777665443 233333 36999999999987775542 45678999999999998754444444444
Q ss_pred HHHCCCCCeEEEEeccCChHH---HHHHHHHh------------------cCC-ceeeee--------------------
Q 004518 459 IAAVPKQRQTLLFSATVPEEV---RQICHIAL------------------KRD-HEFINT-------------------- 496 (747)
Q Consensus 459 l~~~~~~~q~il~SATl~~~v---~~l~~~~~------------------~~~-~~~i~~-------------------- 496 (747)
+....+..++++||||+.... ..++.... ... ..++.+
T Consensus 156 ~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 156 YHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDR 235 (773)
T ss_pred HHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 445556678999999973221 11111110 000 000000
Q ss_pred ---------ccCCcc-ccc-------ccee--------------------------------------------------
Q 004518 497 ---------VEEGSE-ETH-------EQVR-------------------------------------------------- 509 (747)
Q Consensus 497 ---------~~~~~~-~~~-------~~i~-------------------------------------------------- 509 (747)
...... ... ..+.
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence 000000 000 0000
Q ss_pred ----------------------EEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceec
Q 004518 510 ----------------------QMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREI 567 (747)
Q Consensus 510 ----------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~l 567 (747)
..........|...|..+|........+.++||||++...+..++++|...++.+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 0000011223455566666666554567799999999999999999999999999999
Q ss_pred cCC--------CCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEE
Q 004518 568 HSR--------KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639 (747)
Q Consensus 568 h~~--------l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~ 639 (747)
||. |++.+|.+++.+|++|...|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +|.+++
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~ 474 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVV 474 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEE
Confidence 886 99999999999999999999999999999999999999999999999999999999999986 689998
Q ss_pred EeCc
Q 004518 640 LLAP 643 (747)
Q Consensus 640 l~s~ 643 (747)
++..
T Consensus 475 l~~~ 478 (773)
T PRK13766 475 LIAK 478 (773)
T ss_pred EEeC
Confidence 8875
No 77
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.9e-33 Score=294.33 Aligned_cols=342 Identities=20% Similarity=0.265 Sum_probs=263.5
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCe
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPV-LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI 356 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~-il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 356 (747)
....+++++++++.+.|+..|++.+.|+|..++.. ++.|.|.+|..+|+||||++.-++-+..++..+ .
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g----------~ 262 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG----------K 262 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC----------C
Confidence 34577899999999999999999999999999975 789999999999999999998888888887543 3
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHH---HHhcCCCcEEEECchhHHHHHHccccccccCC
Q 004518 357 LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQK---RMQANPCQILVATPGRLRDHIENTAGFATRLM 433 (747)
Q Consensus 357 ~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~ 433 (747)
+.|+++|..+||+|-++.+++-.... ++.+.+.+|-..+..... .-....+||||+|++.+-.+|..+ ..+.
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lg 337 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLG 337 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----Cccc
Confidence 59999999999999999998877654 778878877655443211 111234799999999997777665 4578
Q ss_pred CccEEEEeCCccccCCCcHHHHH---HHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCcccccccee-
Q 004518 434 GVKVLVLDEADHLLDMGFRKDIE---KIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVR- 509 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~f~~~l~---~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~- 509 (747)
++..|||||+|.+-+......+. .-+..+-+..|+|.+|||+.+.- ++++.+-. ..+... .... .+.
T Consensus 338 diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a---~lV~y~----~RPV-plEr 408 (830)
T COG1202 338 DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGA---KLVLYD----ERPV-PLER 408 (830)
T ss_pred ccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCC---eeEeec----CCCC-ChhH
Confidence 99999999999988754333333 33455667899999999985442 33433322 111111 1111 222
Q ss_pred EEEEecCcccchHHHHHHHHHHhh----cCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhc
Q 004518 510 QMHLVAPLDLHFPLLYVLLREHVA----DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK 585 (747)
Q Consensus 510 ~~~~~~~~~~k~~~l~~~l~~~~~----~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~ 585 (747)
|.........|..++..+++.... ++-.+++|||++|+..|+.++.+|...|+.+.++|++|+..+|..+...|.+
T Consensus 409 Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~ 488 (830)
T COG1202 409 HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA 488 (830)
T ss_pred eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc
Confidence 333333456677777777665433 2345699999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeeCCcccccCCCCccEEE---EeCCC-CChhhHHHhhccCCCCC--CcceEEEEeCc
Q 004518 586 SKGLILVTSDVSARGVDYPDVTLVI---QVGLP-SDREQYIHRLGRTGRKG--KEGQGILLLAP 643 (747)
Q Consensus 586 g~~~VLvaT~v~~~GiDip~V~~VI---~~d~p-~s~~~y~Qr~GRagR~G--~~G~~~~l~s~ 643 (747)
+.+.++|+|-+++.|+|+|.-.+|+ -.+.- -++..|.|+.|||||-+ ..|.+|+++.+
T Consensus 489 q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 489 QELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred CCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9999999999999999999877554 13333 38999999999999987 46888888865
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.6e-32 Score=296.17 Aligned_cols=299 Identities=19% Similarity=0.169 Sum_probs=201.7
Q ss_pred HHHHHHHHHHCCCc--EEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhC
Q 004518 305 VQEATLPVLLKGKD--VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYH 382 (747)
Q Consensus 305 iQ~~~i~~il~~~d--vlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 382 (747)
+|.++++.+.++.+ ++++||||||||++|++|++.. ..++++++|+++|+.|+++.+..++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999998864 8899999999999999998842 1238999999999999999999887433
Q ss_pred ---CCceEEEEeCCcchH--HH-----------------HHHHhcCCCcEEEECchhHHHHHHcc---cc--ccccCCCc
Q 004518 383 ---PSIGVQVVIGGTRLA--LE-----------------QKRMQANPCQILVATPGRLRDHIENT---AG--FATRLMGV 435 (747)
Q Consensus 383 ---~~~~~~~~~gg~~~~--~~-----------------~~~l~~~~~~IlV~Tpg~Ll~~l~~~---~~--~~~~L~~i 435 (747)
.++.+..+.|.+... .. ........+.|+++||+.|..++... .. ....+.++
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 134444444432111 00 01112345789999999987655321 11 11135789
Q ss_pred cEEEEeCCccccCCCc-----HHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH--hcCCceeeeeccC-----C---
Q 004518 436 KVLVLDEADHLLDMGF-----RKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA--LKRDHEFINTVEE-----G--- 500 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f-----~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~--~~~~~~~i~~~~~-----~--- 500 (747)
++|||||+|.+..++. ......++.......++++||||+++.+...+... +..+ ++.+... .
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~--~~~v~g~~~~~~~~~~ 224 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVK--IAPIDGEKYQFPDNPE 224 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCce--eeeecCcccccCCChh
Confidence 9999999999875431 11233344444445799999999999877766543 2211 1111111 0
Q ss_pred ---------ccccccceeEEEEecCcccchHHHHH---HHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcc--cccee
Q 004518 501 ---------SEETHEQVRQMHLVAPLDLHFPLLYV---LLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK--LNVRE 566 (747)
Q Consensus 501 ---------~~~~~~~i~~~~~~~~~~~k~~~l~~---~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~--~~v~~ 566 (747)
.......+.+.+.. ....+...+.. .+.+.+....++++||||+|+..++.++..|++.+ +.+..
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~ 303 (357)
T TIGR03158 225 LEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGR 303 (357)
T ss_pred hhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEe
Confidence 00011133333333 23333333333 33333333455699999999999999999999864 57889
Q ss_pred ccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCC
Q 004518 567 IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG 629 (747)
Q Consensus 567 lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRag 629 (747)
+||.+++.+|.++ ++..|||||+++++|||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 304 l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 304 ITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred eecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999998765 378899999999999999987 666 55 899999999999987
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.7e-32 Score=320.77 Aligned_cols=348 Identities=23% Similarity=0.342 Sum_probs=261.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHH
Q 004518 287 SALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRE 366 (747)
Q Consensus 287 ~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 366 (747)
...+..++.+.|...++.+|.+|+..+.+|+++||+.+||||||.+|++|+++++++.+.. ++|+|.||++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a---------~AL~lYPtnA 126 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---------RALLLYPTNA 126 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc---------cEEEEechhh
Confidence 3445778888899999999999999999999999999999999999999999999876542 5899999999
Q ss_pred HHHHHHHHHHHHhhhCC-CceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHH-HccccccccCCCccEEEEeCCc
Q 004518 367 LATQAATEASTLLKYHP-SIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHI-ENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 367 La~Q~~~~~~~l~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l-~~~~~~~~~L~~i~~vIiDEAh 444 (747)
||+.+.+.+.++....+ .+.+..+.|.+. ..+.+.+..++++||++||.+|-.++ .....+...++++++|||||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~-~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTP-PEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCC-hHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 99999999999988776 455555555554 33444677788999999999997744 4455556667889999999999
Q ss_pred cccCC---CcH---HHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC--
Q 004518 445 HLLDM---GFR---KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP-- 516 (747)
Q Consensus 445 ~ll~~---~f~---~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-- 516 (747)
..-.. ... ..+..++...+...|+|++|||+... .+++..+........ +... ......+.+....+
T Consensus 206 tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~-v~~~---g~~~~~~~~~~~~p~~ 280 (851)
T COG1205 206 TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVP-VDED---GSPRGLRYFVRREPPI 280 (851)
T ss_pred eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceee-ccCC---CCCCCceEEEEeCCcc
Confidence 75432 122 22333344455689999999998654 344555555444442 1111 11112223333333
Q ss_pred -------cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHH----HHHHhcc----ccceeccCCCCHHHHHHHHH
Q 004518 517 -------LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVA----DLLGELK----LNVREIHSRKPQSYRTRVSD 581 (747)
Q Consensus 517 -------~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~----~~L~~~~----~~v~~lh~~l~~~eR~~v~~ 581 (747)
.......+..++...... +.++|||+.++..++.+. ..+...+ ..+..+++++...+|.++..
T Consensus 281 ~~~~~~~r~s~~~~~~~~~~~~~~~--~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 281 RELAESIRRSALAELATLAALLVRN--GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHc--CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHH
Confidence 123333333444333332 459999999999999986 3444444 56889999999999999999
Q ss_pred HHhcCCccEEEeeCCcccccCCCCccEEEEeCCCC-ChhhHHHhhccCCCCCCcceEEEEeC--cchHHHHHH
Q 004518 582 EFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPS-DREQYIHRLGRTGRKGKEGQGILLLA--PWEEFFLST 651 (747)
Q Consensus 582 ~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~l~s--~~e~~~l~~ 651 (747)
.|+.|+..++++|++++-||||.+++.||.++.|. +..+++||+|||||.++.+..++++. +.+..++..
T Consensus 359 ~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 359 EFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred HHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhC
Confidence 99999999999999999999999999999999999 89999999999999997777666664 345555543
No 80
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=317.52 Aligned_cols=334 Identities=25% Similarity=0.279 Sum_probs=243.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcC
Q 004518 285 SISALSLKGIKDAGYEKMTIVQEATLPV-LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICP 363 (747)
Q Consensus 285 ~l~~~l~~~l~~~g~~~~t~iQ~~~i~~-il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~P 363 (747)
.+...+.+-++..++..+.+-|+.++.. +..++|+|||+|||||||+++++.+++.+.+. +.++++|||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivP 84 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVP 84 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeC
Confidence 3667777777888888888888888755 45569999999999999999999999999765 235999999
Q ss_pred cHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCC
Q 004518 364 TRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEA 443 (747)
Q Consensus 364 tr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEA 443 (747)
+|+||.++++.+.++..+ ++++...+|+.....+ .+ ..++|+|+||+++-..+.+... .+..+++|||||+
T Consensus 85 lkALa~Ek~~~~~~~~~~--GirV~~~TgD~~~~~~--~l--~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEi 155 (766)
T COG1204 85 LKALAEEKYEEFSRLEEL--GIRVGISTGDYDLDDE--RL--ARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEI 155 (766)
T ss_pred hHHHHHHHHHHhhhHHhc--CCEEEEecCCcccchh--hh--ccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeee
Confidence 999999999999955443 8999999999875432 22 3489999999999877776644 3578999999999
Q ss_pred ccccCCCcHHHHHHHHHH---CCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC----
Q 004518 444 DHLLDMGFRKDIEKIIAA---VPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP---- 516 (747)
Q Consensus 444 h~ll~~~f~~~l~~il~~---~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---- 516 (747)
|.+.+......++.|... .....|++.+|||+|+-- +++...-.+.. .................+++....
T Consensus 156 H~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~ 233 (766)
T COG1204 156 HLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE-EVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKT 233 (766)
T ss_pred eecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHH-HHHHHhCCccc-ccCCCCcccccCCccceEEEEecCcccc
Confidence 999876544555555443 344589999999998652 33332221111 100000000011111112222111
Q ss_pred -cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-----------------------------------
Q 004518 517 -LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL----------------------------------- 560 (747)
Q Consensus 517 -~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~----------------------------------- 560 (747)
.......+..++...... ++++||||+|+..+...++.|+..
T Consensus 234 ~~~~~~~~~~~~v~~~~~~--~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e 311 (766)
T COG1204 234 WPLLIDNLALELVLESLAE--GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311 (766)
T ss_pred ccccchHHHHHHHHHHHhc--CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHH
Confidence 112334444555554443 569999999999999999988731
Q ss_pred --cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEE----EeC-----CCCChhhHHHhhccCC
Q 004518 561 --KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI----QVG-----LPSDREQYIHRLGRTG 629 (747)
Q Consensus 561 --~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI----~~d-----~p~s~~~y~Qr~GRag 629 (747)
...+..+|++|+..+|.-+.+.|+.|.++|||||..++.|+|+|.-++|| .|+ .+-++.+|+|++||||
T Consensus 312 ~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAG 391 (766)
T COG1204 312 LVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAG 391 (766)
T ss_pred HHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCC
Confidence 12467899999999999999999999999999999999999999988777 466 5567899999999999
Q ss_pred CCC--CcceEEEEe
Q 004518 630 RKG--KEGQGILLL 641 (747)
Q Consensus 630 R~G--~~G~~~~l~ 641 (747)
|-| .-|.++++.
T Consensus 392 RPg~d~~G~~~i~~ 405 (766)
T COG1204 392 RPGYDDYGEAIILA 405 (766)
T ss_pred CCCcCCCCcEEEEe
Confidence 988 356677666
No 81
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3e-31 Score=297.55 Aligned_cols=331 Identities=21% Similarity=0.275 Sum_probs=230.5
Q ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.-.++.+|.+++..++ ++++||++|||+|||.++..-+++++-+ ++..+|++++||+-|+.|+...+..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw---------~p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW---------RPKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc---------CCcceEEEeeCCchHHHHHHHHHhhc
Confidence 3468999999998888 9999999999999999988888888743 33467999999999999998666655
Q ss_pred hhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC-cHHHHHH
Q 004518 379 LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG-FRKDIEK 457 (747)
Q Consensus 379 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~-f~~~l~~ 457 (747)
+. ...+....+|.........+. ...+|+|+||..|.+.|.+.... .|+.+.++||||||+-.... +...+..
T Consensus 130 ~~---~~~~T~~l~~~~~~~~r~~i~-~s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~ 203 (746)
T KOG0354|consen 130 LI---PYSVTGQLGDTVPRSNRGEIV-ASKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSKNHPYNNIMRE 203 (746)
T ss_pred cC---cccceeeccCccCCCchhhhh-cccceEEeChHhhhhhccccccc--ccceEEEEEEcccccccccccHHHHHHH
Confidence 43 245555555543332222332 34799999999999998875432 27889999999999876433 4444445
Q ss_pred HHHHCCCCCeEEEEeccCChHHHHHHHHH---hcC----------------------Ccee-------------------
Q 004518 458 IIAAVPKQRQTLLFSATVPEEVRQICHIA---LKR----------------------DHEF------------------- 493 (747)
Q Consensus 458 il~~~~~~~q~il~SATl~~~v~~l~~~~---~~~----------------------~~~~------------------- 493 (747)
.+..-....|+|++|||+........... +-+ +..+
T Consensus 204 ~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 55544444599999999864433321100 000 0000
Q ss_pred --------eee-------------ccCCcccc-----------------------cccee---------EEE--------
Q 004518 494 --------INT-------------VEEGSEET-----------------------HEQVR---------QMH-------- 512 (747)
Q Consensus 494 --------i~~-------------~~~~~~~~-----------------------~~~i~---------~~~-------- 512 (747)
+.. ........ ...++ .++
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 000 00000000 00000 000
Q ss_pred -----------------------Eec--CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc---cccc
Q 004518 513 -----------------------LVA--PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL---KLNV 564 (747)
Q Consensus 513 -----------------------~~~--~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~---~~~v 564 (747)
... ....++..+..++..+....+..++|||+.++..+..+.++|... ++..
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 000 012234445555666656667779999999999999999999842 2222
Q ss_pred eec--------cCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcce
Q 004518 565 REI--------HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ 636 (747)
Q Consensus 565 ~~l--------h~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~ 636 (747)
..+ ..+|++.++..++++|++|.++|||||++++.||||+.|+.||-||...|+...+||.|| ||+ +.|.
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCe
Confidence 222 248999999999999999999999999999999999999999999999999999999999 999 5899
Q ss_pred EEEEeCcchHH
Q 004518 637 GILLLAPWEEF 647 (747)
Q Consensus 637 ~~~l~s~~e~~ 647 (747)
|+++++..+..
T Consensus 522 ~vll~t~~~~~ 532 (746)
T KOG0354|consen 522 CVLLTTGSEVI 532 (746)
T ss_pred EEEEEcchhHH
Confidence 99999864433
No 82
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.6e-32 Score=273.53 Aligned_cols=346 Identities=20% Similarity=0.254 Sum_probs=254.9
Q ss_pred CcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 004518 280 RFDQCSISALSLKGIKD-AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILV 358 (747)
Q Consensus 280 ~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~v 358 (747)
.-++++.+.+..+-|+. +.+++++|.|..+|.+.+.+.++++..|||.||++||++|+|-. ...+
T Consensus 72 dkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------------dg~a 137 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------------DGFA 137 (695)
T ss_pred ccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------------CCce
Confidence 34578888888888775 57889999999999999999999999999999999999998754 2349
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHH---HHHh--cCCCcEEEECchhHHHH--HHcccccccc
Q 004518 359 LVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ---KRMQ--ANPCQILVATPGRLRDH--IENTAGFATR 431 (747)
Q Consensus 359 LIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~---~~l~--~~~~~IlV~Tpg~Ll~~--l~~~~~~~~~ 431 (747)
||+||...|+..+.-.++.+ ++....+...++..... ..+. .....+++.||+.+..- +++.-.....
T Consensus 138 lvi~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~ 212 (695)
T KOG0353|consen 138 LVICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALE 212 (695)
T ss_pred EeechhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888877 45555555444433211 1111 23468999999988421 1111111123
Q ss_pred CCCccEEEEeCCccccCCC--cHHHHH--HHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccc
Q 004518 432 LMGVKVLVLDEADHLLDMG--FRKDIE--KIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQ 507 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~--f~~~l~--~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 507 (747)
...+.++.|||+|+..+|| |+..+. .|+...-+...+|+++||.+..+-...+..+.....+.-......+.....
T Consensus 213 ~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 213 AGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYE 292 (695)
T ss_pred cceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeE
Confidence 3457889999999999988 666555 346666677889999999988776655544332222211111111212112
Q ss_pred eeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCC
Q 004518 508 VRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK 587 (747)
Q Consensus 508 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~ 587 (747)
++|. ....+.-.+-+..+++.. -.+...||||-++++|+.++..|+..|+....+|.+|.+.++.-+-+.|-.|+
T Consensus 293 v~qk--p~n~dd~~edi~k~i~~~---f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~e 367 (695)
T KOG0353|consen 293 VRQK--PGNEDDCIEDIAKLIKGD---FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGE 367 (695)
T ss_pred eeeC--CCChHHHHHHHHHHhccc---cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccc
Confidence 2211 111222233333343332 23446799999999999999999999999999999999999999999999999
Q ss_pred ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHH-------------------------------------------h
Q 004518 588 GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIH-------------------------------------------R 624 (747)
Q Consensus 588 ~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Q-------------------------------------------r 624 (747)
++|+|||-.+++|||-|+|++|||..+|.+++.|.| .
T Consensus 368 iqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfseke 447 (695)
T KOG0353|consen 368 IQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKE 447 (695)
T ss_pred eEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchh
Confidence 999999999999999999999999999999999999 7
Q ss_pred hccCCCCCCcceEEEEeCcchHHHH
Q 004518 625 LGRTGRKGKEGQGILLLAPWEEFFL 649 (747)
Q Consensus 625 ~GRagR~G~~G~~~~l~s~~e~~~l 649 (747)
.|||||.+.+..|+++|.-.|....
T Consensus 448 sgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 448 SGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccccccCCCcccEEEEechHHHHhH
Confidence 7999999999999999987665443
No 83
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.2e-31 Score=282.85 Aligned_cols=309 Identities=20% Similarity=0.267 Sum_probs=226.3
Q ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
+......+.+.+..|-.++.|||.++||||||+ ++| +.|+..++.. ...+.|++|+|..|..++..+.+-
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~--QyL~edGY~~------~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTT--QLA--QYLYEDGYAD------NGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhH--HHHHhccccc------CCeeeecCchHHHHHHHHHHHHHH
Confidence 334456778888889999999999999999999 666 8888877643 236999999999999999877655
Q ss_pred hhhC--CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccc-cCCCcHHHH
Q 004518 379 LKYH--PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHL-LDMGFRKDI 455 (747)
Q Consensus 379 ~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~l-l~~~f~~~l 455 (747)
.... ..+.+.+.+.+.+ ...+.|-++|.|.|++....+ ..|.++++||+||||.- ++.+..--+
T Consensus 424 M~~~lG~~VGYsIRFEdvT---------~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGl 490 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFEDVT---------SEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGL 490 (1042)
T ss_pred hCCccccccceEEEeeecC---------CCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHH
Confidence 4221 1344455555443 233789999999999887665 45789999999999964 344333333
Q ss_pred HHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHh---
Q 004518 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHV--- 532 (747)
Q Consensus 456 ~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--- 532 (747)
.+....-..+.++|++|||+... .+ ..++.+.+.+. + +.-...+.-++...+.+. ++...+++.+
T Consensus 491 lk~~larRrdlKliVtSATm~a~--kf-~nfFgn~p~f~-I-----pGRTyPV~~~~~k~p~eD---YVeaavkq~v~Ih 558 (1042)
T KOG0924|consen 491 LKKVLARRRDLKLIVTSATMDAQ--KF-SNFFGNCPQFT-I-----PGRTYPVEIMYTKTPVED---YVEAAVKQAVQIH 558 (1042)
T ss_pred HHHHHHhhccceEEEeeccccHH--HH-HHHhCCCceee-e-----cCCccceEEEeccCchHH---HHHHHHhhheEee
Confidence 33444445688999999999754 23 33444333332 1 111123444444444333 3334444332
Q ss_pred hcCCCCeEEEEecchhHHHHHHHHHHhc----------cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccC
Q 004518 533 ADNPEYKVLVFCTTAMVTRMVADLLGEL----------KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVD 602 (747)
Q Consensus 533 ~~~~~~k~LVF~~s~~~~~~l~~~L~~~----------~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiD 602 (747)
...+++-+|||.+++++++..+..++.. ++.|++|++.|+...+.++|+.-..|.++|||||++|+++|+
T Consensus 559 l~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLT 638 (1042)
T KOG0924|consen 559 LSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLT 638 (1042)
T ss_pred ccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhcee
Confidence 3345679999999998887766655432 678999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCC------------------CCChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 603 YPDVTLVIQVGL------------------PSDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 603 ip~V~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
||++.+||+.+. |.|.+...||+|||||.| +|.||.+|+.
T Consensus 639 i~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 639 IPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 999999997664 457788899999999997 9999999986
No 84
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=297.51 Aligned_cols=342 Identities=19% Similarity=0.176 Sum_probs=254.0
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
..+..+.+++.++.+++.++|+|+||||||+.....+|+....++ ..+.++|++|+|-.|..+++++..--.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~ 244 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERG 244 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhc
Confidence 457788999999999999999999999999965555666665554 345699999999999999997665433
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcccc-CCCcHHHHHHHH
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEKII 459 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll-~~~f~~~l~~il 459 (747)
...+-.++.-+...... ...+.+++||.|.|++.|..+ ..+.++.+||+||+|+-. +.+|.-.+.+.+
T Consensus 245 ~~~g~~VGYqvrl~~~~-------s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~l 313 (924)
T KOG0920|consen 245 ESLGEEVGYQVRLESKR-------SRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDL 313 (924)
T ss_pred cccCCeeeEEEeeeccc-------CCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence 22233343333332211 223789999999999999875 567899999999999654 567877777777
Q ss_pred HHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccc--------------cccceeEE------------EE
Q 004518 460 AAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEE--------------THEQVRQM------------HL 513 (747)
Q Consensus 460 ~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~--------------~~~~i~~~------------~~ 513 (747)
-..++..++|+||||+..+ .+..|+... +++.+.....+. ......+. ..
T Consensus 314 L~~~p~LkvILMSAT~dae---~fs~YF~~~-pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (924)
T KOG0920|consen 314 LPRNPDLKVILMSATLDAE---LFSDYFGGC-PVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLK 389 (924)
T ss_pred hhhCCCceEEEeeeecchH---HHHHHhCCC-ceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccch
Confidence 7777999999999999854 444555432 222221111000 00000000 00
Q ss_pred ecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-------cccceeccCCCCHHHHHHHHHHHhcC
Q 004518 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL-------KLNVREIHSRKPQSYRTRVSDEFRKS 586 (747)
Q Consensus 514 ~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~-------~~~v~~lh~~l~~~eR~~v~~~F~~g 586 (747)
....+....++..++...+.....+.+|||.|++.++..+.+.|... .+-+.++|+.|+..++..++...+.|
T Consensus 390 ~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g 469 (924)
T KOG0920|consen 390 LWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG 469 (924)
T ss_pred hccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC
Confidence 11233456777788877777777889999999999999999999642 36689999999999999999999999
Q ss_pred CccEEEeeCCcccccCCCCccEEEEeCCC--------C----------ChhhHHHhhccCCCCCCcceEEEEeCcchHHH
Q 004518 587 KGLILVTSDVSARGVDYPDVTLVIQVGLP--------S----------DREQYIHRLGRTGRKGKEGQGILLLAPWEEFF 648 (747)
Q Consensus 587 ~~~VLvaT~v~~~GiDip~V~~VI~~d~p--------~----------s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~ 648 (747)
..+||+||++|+++|+|++|-+||+.+.- . +.+.-.||.|||||. ++|.||.+|+......
T Consensus 470 ~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 470 TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 99999999999999999999999976543 2 556678999999999 6999999999877655
Q ss_pred HHH-hhhCCCccCCCCCCC
Q 004518 649 LST-IKDLPILKAPVPSVD 666 (747)
Q Consensus 649 l~~-l~~~~i~~~~~~~~~ 666 (747)
+.. .+-+++.+.|++++.
T Consensus 549 ~~~~~q~PEilR~pL~~l~ 567 (924)
T KOG0920|consen 549 LMLAYQLPEILRTPLEELC 567 (924)
T ss_pred cccccCChHHHhChHHHhh
Confidence 554 666777777776544
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.5e-30 Score=292.16 Aligned_cols=311 Identities=18% Similarity=0.178 Sum_probs=206.4
Q ss_pred CCCcHHHHHHHHHHHC-C--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLK-G--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~-~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
..++|+|++++..++. + +..|+++|||+|||++.+..+ ..+. .++|||||+.+|+.||.+.+.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l~-------------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTVK-------------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHhC-------------CCEEEEeCcHHHHHHHHHHHH
Confidence 4689999999988874 3 478999999999999865433 3331 139999999999999999999
Q ss_pred HHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccc---c--cccCCCccEEEEeCCccccCCCc
Q 004518 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAG---F--ATRLMGVKVLVLDEADHLLDMGF 451 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~---~--~~~L~~i~~vIiDEAh~ll~~~f 451 (747)
+++... ...+..+.|+.... ......|+|+|+..+.....+... . .+.-..+.+||+||||++....|
T Consensus 320 ~~~~l~-~~~I~~~tg~~k~~------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~f 392 (732)
T TIGR00603 320 MWSTID-DSQICRFTSDAKER------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMF 392 (732)
T ss_pred HhcCCC-CceEEEEecCcccc------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHH
Confidence 875432 34455555543211 112368999999877532211100 0 01124688999999999875443
Q ss_pred HHHHHHHHHHCCCCCeEEEEeccCChHHHHH--HHHHhcCCceeeeeccC--CccccccceeEEEEe-------------
Q 004518 452 RKDIEKIIAAVPKQRQTLLFSATVPEEVRQI--CHIALKRDHEFINTVEE--GSEETHEQVRQMHLV------------- 514 (747)
Q Consensus 452 ~~~l~~il~~~~~~~q~il~SATl~~~v~~l--~~~~~~~~~~~i~~~~~--~~~~~~~~i~~~~~~------------- 514 (747)
..++..+.. ...+++|||+..+.... +..++. +.+...... ....-...+....+.
T Consensus 393 ----r~il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiG--P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~ 465 (732)
T TIGR00603 393 ----RRVLTIVQA-HCKLGLTATLVREDDKITDLNFLIG--PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLR 465 (732)
T ss_pred ----HHHHHhcCc-CcEEEEeecCcccCCchhhhhhhcC--CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHH
Confidence 344554433 34799999985432221 111221 111110000 000000011111111
Q ss_pred ----------cCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHh
Q 004518 515 ----------APLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR 584 (747)
Q Consensus 515 ----------~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~ 584 (747)
.....|+..+..++..+. ..+.++||||.+...+..++..|. +..+||.+++.+|.++++.|+
T Consensus 466 ~~~~~k~~l~~~np~K~~~~~~Li~~he--~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr 538 (732)
T TIGR00603 466 ENSRKRMLLYVMNPNKFRACQFLIRFHE--QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQ 538 (732)
T ss_pred hcchhhhHHhhhChHHHHHHHHHHHHHh--hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHH
Confidence 112233444444554432 245699999999999888888773 566999999999999999998
Q ss_pred cC-CccEEEeeCCcccccCCCCccEEEEeCCC-CChhhHHHhhccCCCCCCcceE-------EEEeCcch
Q 004518 585 KS-KGLILVTSDVSARGVDYPDVTLVIQVGLP-SDREQYIHRLGRTGRKGKEGQG-------ILLLAPWE 645 (747)
Q Consensus 585 ~g-~~~VLvaT~v~~~GiDip~V~~VI~~d~p-~s~~~y~Qr~GRagR~G~~G~~-------~~l~s~~e 645 (747)
.| ..++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ |.|+++..
T Consensus 539 ~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 539 HNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred hCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 75 78999999999999999999999999998 4999999999999999876665 77777633
No 86
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.7e-29 Score=280.74 Aligned_cols=335 Identities=23% Similarity=0.278 Sum_probs=236.5
Q ss_pred HCCCCCCcHHHHHHHHHHHC-CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 004518 296 DAGYEKMTIVQEATLPVLLK-GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374 (747)
Q Consensus 296 ~~g~~~~t~iQ~~~i~~il~-~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 374 (747)
-++|..+..+|..++|.+.+ +-++|||||||||||.+|+|.||+.+.+ .....+-.....++++|+|+++||.++++.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~-~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE-HEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh-hccccccccCCceEEEEechHHHHHHHHHH
Confidence 35778899999999998875 5799999999999999999999988765 222333444567899999999999999997
Q ss_pred HHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHc-cccccccCCCccEEEEeCCccccCCCcHH
Q 004518 375 ASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIEN-TAGFATRLMGVKVLVLDEADHLLDMGFRK 453 (747)
Q Consensus 375 ~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~-~~~~~~~L~~i~~vIiDEAh~ll~~~f~~ 453 (747)
+.+-+... ++.+..++|++...... +. .++|||+||+++ +.+.+ ..+....++.+.+|||||+|.|-+ ....
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~te--i~--~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGp 256 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTE--IA--DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGP 256 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHH--HH--hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC-cccc
Confidence 66655444 78999999998765433 22 289999999998 44433 222233467899999999997765 3455
Q ss_pred HHHHHHHHC-------CCCCeEEEEeccCChHHHHHHHHHhcCC--ceeeeeccCCccccccceeEEEEecCcc---cch
Q 004518 454 DIEKIIAAV-------PKQRQTLLFSATVPEEVRQICHIALKRD--HEFINTVEEGSEETHEQVRQMHLVAPLD---LHF 521 (747)
Q Consensus 454 ~l~~il~~~-------~~~~q~il~SATl~~~v~~l~~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~---~k~ 521 (747)
.++.|+..+ ....+++++|||+|+-. .++ .+++.+ ..+..... ..-+-.+.+.++-.... ...
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN~e-DvA-~fL~vn~~~glfsFd~---~yRPvpL~~~~iG~k~~~~~~~~ 331 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPNYE-DVA-RFLRVNPYAGLFSFDQ---RYRPVPLTQGFIGIKGKKNRQQK 331 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHH-HHhcCCCccceeeecc---cccccceeeeEEeeecccchhhh
Confidence 555554433 34568999999998743 333 333332 22222211 22222344444332222 111
Q ss_pred ----HHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcc-----------------------ccceeccCCCCHH
Q 004518 522 ----PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK-----------------------LNVREIHSRKPQS 574 (747)
Q Consensus 522 ----~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~-----------------------~~v~~lh~~l~~~ 574 (747)
...+.-+.+.+. .+..++|||.++..+...++.|.+.. ..+..+|++|...
T Consensus 332 ~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~ 409 (1230)
T KOG0952|consen 332 KNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRS 409 (1230)
T ss_pred hhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchh
Confidence 222333333333 34599999999999999999886641 2467889999999
Q ss_pred HHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEE----EeCCCC------ChhhHHHhhccCCCCC--CcceEEEEeC
Q 004518 575 YRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI----QVGLPS------DREQYIHRLGRTGRKG--KEGQGILLLA 642 (747)
Q Consensus 575 eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI----~~d~p~------s~~~y~Qr~GRagR~G--~~G~~~~l~s 642 (747)
+|.-+...|..|.++||+||..++.|+++|+--++| .||... +.-+.+|..|||||-+ ..|.++++-+
T Consensus 410 DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt 489 (1230)
T KOG0952|consen 410 DRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITT 489 (1230)
T ss_pred hHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999866666 243332 4567799999999975 5687877765
Q ss_pred cch
Q 004518 643 PWE 645 (747)
Q Consensus 643 ~~e 645 (747)
...
T Consensus 490 ~dk 492 (1230)
T KOG0952|consen 490 RDK 492 (1230)
T ss_pred ccH
Confidence 433
No 87
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=267.97 Aligned_cols=355 Identities=18% Similarity=0.211 Sum_probs=270.2
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCC-CChh--HHHHHHHHHHHHHcCC--------------------CCCCCCCC
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKT-GTGK--TVAFLLPSIEVVIKSP--------------------PVDRDQRR 353 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~T-GsGK--Tl~~~lpil~~l~~~~--------------------~~~~~~~~ 353 (747)
..-..+|+.|.+.+..+.+++|+++.-.| +.|+ +.+|++++|+|+++.+ ...++++.
T Consensus 212 K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 212 KKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 34567999999999999999999875544 3344 5689999999998753 22467899
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEE--------EEeC--------CcchHHHHHHHhcCC----------
Q 004518 354 PPILVLVICPTRELATQAATEASTLLKYHPSIGVQ--------VVIG--------GTRLALEQKRMQANP---------- 407 (747)
Q Consensus 354 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~--------~~~g--------g~~~~~~~~~l~~~~---------- 407 (747)
++|+||||||+|+.|..+.+.+..++.....-+.. --++ ....+.+.+.++.++
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 99999999999999999999888874322110000 0011 122333333333332
Q ss_pred --------------CcEEEECchhHHHHHHc---cccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCC-----
Q 004518 408 --------------CQILVATPGRLRDHIEN---TAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ----- 465 (747)
Q Consensus 408 --------------~~IlV~Tpg~Ll~~l~~---~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~----- 465 (747)
+|||||+|..|..++.+ +......|++|+++|||.||.|+ ++.|+++..|+.+++..
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCccccc
Confidence 79999999999999973 23333568999999999999888 66778888887776532
Q ss_pred -------------------CeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCcc----ccccceeE-------EEEec
Q 004518 466 -------------------RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSE----ETHEQVRQ-------MHLVA 515 (747)
Q Consensus 466 -------------------~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~----~~~~~i~~-------~~~~~ 515 (747)
+|+++||+-..+.+..++..+|.+-...+........ .....+.| ..+..
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~ 530 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIE 530 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCccc
Confidence 6999999999999999999988775444332221111 11112222 23456
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
.++.+|.++...|...+.+.....+|||+|++.+..+++++|++..+.+..+|.+.+..+-.++.+.|..|+..||++|.
T Consensus 531 ~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTE 610 (698)
T KOG2340|consen 531 TPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTE 610 (698)
T ss_pred CchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEeh
Confidence 68899999999888877777677999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccc--cccCCCCccEEEEeCCCCChhhHHHhh---ccCCCCC----CcceEEEEeCcchHHHHHHh
Q 004518 596 VSA--RGVDYPDVTLVIQVGLPSDREQYIHRL---GRTGRKG----KEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 596 v~~--~GiDip~V~~VI~~d~p~s~~~y~Qr~---GRagR~G----~~G~~~~l~s~~e~~~l~~l 652 (747)
.++ +..+|.||+.||+|.+|.+|..|...+ +|+.-.| ..-.|.++|+++|.--|+.+
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 998 999999999999999999999995544 4443333 23479999999997766554
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=1.5e-27 Score=278.81 Aligned_cols=311 Identities=19% Similarity=0.228 Sum_probs=215.6
Q ss_pred CCcHHHHHHHHHHHC---CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLLK---GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~---~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
.+++.|+++++.+.+ ++++++.|+||||||.+|+.++.+.+.. +.++||++||++|+.|+++.+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 589999999999987 4789999999999999998887766642 23599999999999999999887
Q ss_pred HhhhCCCceEEEEeCCcchHHHH---HHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCc---
Q 004518 378 LLKYHPSIGVQVVIGGTRLALEQ---KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGF--- 451 (747)
Q Consensus 378 l~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f--- 451 (747)
.+ +..+..++++.+..... ..+..+.++|+|+|++.+. ..+.++.+|||||+|....++.
T Consensus 213 ~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p 278 (679)
T PRK05580 213 RF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGP 278 (679)
T ss_pred Hh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCC
Confidence 53 45677888887654332 3344567899999998763 3467899999999997654321
Q ss_pred ---HHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec-----CcccchHH
Q 004518 452 ---RKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA-----PLDLHFPL 523 (747)
Q Consensus 452 ---~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-----~~~~k~~~ 523 (747)
...+. +......+.++|++|||.+.+....+.. .....+.............+.-..... ........
T Consensus 279 ~y~~r~va-~~ra~~~~~~~il~SATps~~s~~~~~~---g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 279 RYHARDLA-VVRAKLENIPVVLGSATPSLESLANAQQ---GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred CCcHHHHH-HHHhhccCCCEEEEcCCCCHHHHHHHhc---cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHH
Confidence 12222 3334456789999999987665444321 112222221111111111111111000 00012244
Q ss_pred HHHHHHHHhhcCCCCeEEEEecch--------------------------------------------------------
Q 004518 524 LYVLLREHVADNPEYKVLVFCTTA-------------------------------------------------------- 547 (747)
Q Consensus 524 l~~~l~~~~~~~~~~k~LVF~~s~-------------------------------------------------------- 547 (747)
+...+.+.+.. +.++|||+|.+
T Consensus 355 l~~~i~~~l~~--g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l 432 (679)
T PRK05580 355 LLEAIKQRLER--GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDL 432 (679)
T ss_pred HHHHHHHHHHc--CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCee
Confidence 55666665543 34788887742
Q ss_pred ----hHHHHHHHHHHhc--cccceeccCCCCH--HHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeC--CCCC
Q 004518 548 ----MVTRMVADLLGEL--KLNVREIHSRKPQ--SYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVG--LPSD 617 (747)
Q Consensus 548 ----~~~~~l~~~L~~~--~~~v~~lh~~l~~--~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d--~p~s 617 (747)
..++.+++.|++. +.++..+|+++.+ .++.++++.|.+|+..|||+|+++++|+|+|+|++|+.++ .+-+
T Consensus 433 ~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 433 VPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred EEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 1344666666665 6789999999874 5789999999999999999999999999999999996554 4432
Q ss_pred ----------hhhHHHhhccCCCCCCcceEEEEeC
Q 004518 618 ----------REQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 618 ----------~~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
.+.|.|++||+||.+..|.+++...
T Consensus 513 ~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 513 SPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 2678999999999999999997654
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.8e-27 Score=270.06 Aligned_cols=325 Identities=19% Similarity=0.231 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.++++|-..--.++.|+ |+.++||+|||++|.+|++..++... .|+|++||++||.|.++++..++.
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~-----------~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR-----------GVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEcCCHHHHHHHHHHHHHHhc
Confidence 57788877666666664 89999999999999999998775432 289999999999999999999998
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccccccc---cCCCccEEEEeCCccccC-C------
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGFAT---RLMGVKVLVLDEADHLLD-M------ 449 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~~~---~L~~i~~vIiDEAh~ll~-~------ 449 (747)
+. ++++.+++||.+........ .++|+|+||++| .++|..+..+.. ....+.++||||||.|+- .
T Consensus 149 ~l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 149 FL-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred cc-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 87 79999999998766543333 489999999999 899876532211 125899999999998652 1
Q ss_pred --C-------cHHHHHHHHHHCCC--------------CCeEEEEeccCChH----------------------------
Q 004518 450 --G-------FRKDIEKIIAAVPK--------------QRQTLLFSATVPEE---------------------------- 478 (747)
Q Consensus 450 --~-------f~~~l~~il~~~~~--------------~~q~il~SATl~~~---------------------------- 478 (747)
| ....+..+...+.. ..+.+.+|-.-...
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 0 11112222221111 11222222210000
Q ss_pred HHHHH--HHHhcCCceeeee------ccCCc-------------------------------------------------
Q 004518 479 VRQIC--HIALKRDHEFINT------VEEGS------------------------------------------------- 501 (747)
Q Consensus 479 v~~l~--~~~~~~~~~~i~~------~~~~~------------------------------------------------- 501 (747)
+...+ ...+..+..++.. ++...
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 00000 1111111111100 00000
Q ss_pred ----------------------ccccccee----EEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHH
Q 004518 502 ----------------------EETHEQVR----QMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555 (747)
Q Consensus 502 ----------------------~~~~~~i~----~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~ 555 (747)
-++...+. ...+......|+..+..-+..... .+.++||||+|+..++.++.
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~ 462 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQ 462 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHH
Confidence 00000000 011223334455555555554433 34599999999999999999
Q ss_pred HHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCC-------------------------------
Q 004518 556 LLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP------------------------------- 604 (747)
Q Consensus 556 ~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip------------------------------- 604 (747)
+|.+.++++..||+.+.+.++..+.+.|+.|. |+||||+|+||+||.
T Consensus 463 ~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (896)
T PRK13104 463 LLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKR 540 (896)
T ss_pred HHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999995 999999999999995
Q ss_pred -------CccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchH
Q 004518 605 -------DVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646 (747)
Q Consensus 605 -------~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~ 646 (747)
|==+||-...+.|..--.|-.|||||.|.+|.+..|+|-.|.
T Consensus 541 ~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 541 HDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112788888888998899999999999999999999987664
No 90
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=1.4e-26 Score=274.06 Aligned_cols=321 Identities=17% Similarity=0.196 Sum_probs=201.7
Q ss_pred CCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.|.|+|..++..++.. ..+|++.++|.|||..+.+.+-+.+. .+. ..++|||||. .|+.||..++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~-~g~--------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL-TGR--------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH-cCC--------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 5899999998776543 47999999999999986554444333 221 1239999997 8999999888654
Q ss_pred hhhCCCceEEEEeCCcchHHHHH---HHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC--cHH
Q 004518 379 LKYHPSIGVQVVIGGTRLALEQK---RMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG--FRK 453 (747)
Q Consensus 379 ~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~--f~~ 453 (747)
+ ++...++.++. ...... ..+ ...+++|+|.+.|...-.... ...-..+++|||||||++.... -..
T Consensus 222 F----~l~~~i~~~~~-~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~--~l~~~~wdlvIvDEAH~lk~~~~~~s~ 293 (956)
T PRK04914 222 F----NLRFSLFDEER-YAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLE--QALAAEWDLLVVDEAHHLVWSEEAPSR 293 (956)
T ss_pred h----CCCeEEEcCcc-hhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHH--HHhhcCCCEEEEechhhhccCCCCcCH
Confidence 3 23333333221 110000 000 125899999887764211000 0112368999999999986311 111
Q ss_pred HHHHHHHHCCCCCeEEEEeccCCh----HHHHHH----------------------------HHHhcCCc----------
Q 004518 454 DIEKIIAAVPKQRQTLLFSATVPE----EVRQIC----------------------------HIALKRDH---------- 491 (747)
Q Consensus 454 ~l~~il~~~~~~~q~il~SATl~~----~v~~l~----------------------------~~~~~~~~---------- 491 (747)
.+..+.........++++|||+-. +...++ ..++....
T Consensus 294 ~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~ 373 (956)
T PRK04914 294 EYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALG 373 (956)
T ss_pred HHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 122222222234468999999621 111110 00000000
Q ss_pred ------e---eeeeccC----------------------------C-----ccccccceeEEEEec--------------
Q 004518 492 ------E---FINTVEE----------------------------G-----SEETHEQVRQMHLVA-------------- 515 (747)
Q Consensus 492 ------~---~i~~~~~----------------------------~-----~~~~~~~i~~~~~~~-------------- 515 (747)
. .+..... . .......+....+..
T Consensus 374 ~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~ 453 (956)
T PRK04914 374 ELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEA 453 (956)
T ss_pred HHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHH
Confidence 0 0000000 0 000000000000000
Q ss_pred ----------------------CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHH-hccccceeccCCCC
Q 004518 516 ----------------------PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG-ELKLNVREIHSRKP 572 (747)
Q Consensus 516 ----------------------~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~-~~~~~v~~lh~~l~ 572 (747)
..+.|...|..++. .....++||||+++..+..+++.|+ ..|+.+..+||+|+
T Consensus 454 ~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~----~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s 529 (956)
T PRK04914 454 RARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLK----SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS 529 (956)
T ss_pred HHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHH----hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC
Confidence 01122333333333 3345699999999999999999994 56999999999999
Q ss_pred HHHHHHHHHHHhcC--CccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 573 QSYRTRVSDEFRKS--KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 573 ~~eR~~v~~~F~~g--~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
+.+|.++++.|+++ ...|||||+++++|+|++.+++||+||+|+|+..|.||+||++|.|+.+.+.+++..
T Consensus 530 ~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 530 IIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred HHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 99999999999984 589999999999999999999999999999999999999999999999887666654
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=266.29 Aligned_cols=315 Identities=21% Similarity=0.242 Sum_probs=233.8
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.+.|+|..+|.++-++..|+|+|.|.+|||.++-.+|.+.+... .+||++.|-++|.+|-++++..-++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------QRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------QRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------CeEEeeChhhhhcchhHHHHHHHhc
Confidence 57899999999999999999999999999999888777776432 3599999999999999998776543
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHH
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~ 460 (747)
.+++.+|+.++. ..+.++|+|.+.|..++.++... ++.+.+||+||+|.|-|....-.|+.-+-
T Consensus 198 -----DVGLMTGDVTIn--------P~ASCLVMTTEILRsMLYRGSEv---mrEVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948|consen 198 -----DVGLMTGDVTIN--------PDASCLVMTTEILRSMLYRGSEV---MREVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred -----ccceeecceeeC--------CCCceeeeHHHHHHHHHhccchH---hheeeeEEeeeehhccccccceeeeeeEE
Confidence 356778877654 24789999999999999887543 67899999999999999887778888888
Q ss_pred HCCCCCeEEEEeccCChHHH--HHHHHHhcCCceeeeeccCCcccccccee----EEEEecCcccch--H----------
Q 004518 461 AVPKQRQTLLFSATVPEEVR--QICHIALKRDHEFINTVEEGSEETHEQVR----QMHLVAPLDLHF--P---------- 522 (747)
Q Consensus 461 ~~~~~~q~il~SATl~~~v~--~l~~~~~~~~~~~i~~~~~~~~~~~~~i~----~~~~~~~~~~k~--~---------- 522 (747)
.+|++.+.+++|||+|+... +++...-+.|..++.+.....+..+.-.. ..|.+++...+| +
T Consensus 262 llP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~ 341 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLR 341 (1041)
T ss_pred eccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhh
Confidence 89999999999999998753 23333333344444443222221111111 122222222111 1
Q ss_pred ----------------------------HHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcc-------------
Q 004518 523 ----------------------------LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK------------- 561 (747)
Q Consensus 523 ----------------------------~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~------------- 561 (747)
-++++++-.+.+. -.++|||+-++++|+.++-.+.+..
T Consensus 342 ~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~-~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~i 420 (1041)
T KOG0948|consen 342 KAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERN-YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETI 420 (1041)
T ss_pred ccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhc-CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHH
Confidence 1223333222222 2389999999999999998876531
Q ss_pred --------------------------ccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEE----
Q 004518 562 --------------------------LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQ---- 611 (747)
Q Consensus 562 --------------------------~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~---- 611 (747)
-.++.+||++-+--..-+.-.|..|-++||+||..++.|+|.|.-++|+-
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rK 500 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRK 500 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccc
Confidence 14788999999999999999999999999999999999999999777762
Q ss_pred eCCC----CChhhHHHhhccCCCCCC--cceEEEEeCc
Q 004518 612 VGLP----SDREQYIHRLGRTGRKGK--EGQGILLLAP 643 (747)
Q Consensus 612 ~d~p----~s~~~y~Qr~GRagR~G~--~G~~~~l~s~ 643 (747)
||-- -+.-.|+|++|||||.|. .|.|++++..
T Consensus 501 fDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 501 FDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred cCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 2211 256789999999999995 5778887764
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=6.6e-27 Score=261.61 Aligned_cols=318 Identities=20% Similarity=0.238 Sum_probs=229.3
Q ss_pred HCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 296 DAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 296 ~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
...| .+..+|++||-++..|..|+|.|+|.+|||+++-.++.-... ...+++++.|-++|.+|-++.+
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-----------h~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-----------HMTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh-----------hccceEecchhhhhccchHHHH
Confidence 3444 588999999999999999999999999999986555433221 1345999999999999999988
Q ss_pred HHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHH
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l 455 (747)
++-+. + +.+++|+..... .+.++|||.+.|..+|.++.+. ++++++||+||+|.+.|....-.|
T Consensus 361 k~tF~---D--vgLlTGDvqinP--------eAsCLIMTTEILRsMLYrgadl---iRDvE~VIFDEVHYiND~eRGvVW 424 (1248)
T KOG0947|consen 361 KETFG---D--VGLLTGDVQINP--------EASCLIMTTEILRSMLYRGADL---IRDVEFVIFDEVHYINDVERGVVW 424 (1248)
T ss_pred HHhcc---c--cceeecceeeCC--------CcceEeehHHHHHHHHhcccch---hhccceEEEeeeeecccccccccc
Confidence 87643 2 337888876543 3789999999999999987533 678999999999999999888899
Q ss_pred HHHHHHCCCCCeEEEEeccCChHHH--HHHHHHhcCCceeeeeccCCcccccc--------------------ceeE---
Q 004518 456 EKIIAAVPKQRQTLLFSATVPEEVR--QICHIALKRDHEFINTVEEGSEETHE--------------------QVRQ--- 510 (747)
Q Consensus 456 ~~il~~~~~~~q~il~SATl~~~v~--~l~~~~~~~~~~~i~~~~~~~~~~~~--------------------~i~~--- 510 (747)
+.++-.+|+..++|++|||+|+.++ .++...-.....++.+.....+-.+. .++.
T Consensus 425 EEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~ 504 (1248)
T KOG0947|consen 425 EEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKD 504 (1248)
T ss_pred eeeeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhh
Confidence 9999999999999999999987653 23322222222222111111000000 0000
Q ss_pred ------EEEe-----------------------------cCcccch--HHHHHHHHHHhhcCCCCeEEEEecchhHHHHH
Q 004518 511 ------MHLV-----------------------------APLDLHF--PLLYVLLREHVADNPEYKVLVFCTTAMVTRMV 553 (747)
Q Consensus 511 ------~~~~-----------------------------~~~~~k~--~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l 553 (747)
.++. .....+. .....++... .+..--++||||-+++.|+..
T Consensus 505 ~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L-~k~~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 505 SLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL-RKKNLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred hhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHH-hhcccCceEEEEEccccHHHH
Confidence 0000 0000011 1233444333 233335899999999999999
Q ss_pred HHHHHhcc---------------------------------------ccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 554 ADLLGELK---------------------------------------LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 554 ~~~L~~~~---------------------------------------~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
+.+|...+ -.+.++||++-+--..-|.-.|..|-++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 99996532 147889999999999999999999999999999
Q ss_pred CCcccccCCCCccEEEEeCCC---------CChhhHHHhhccCCCCCC--cceEEEEeCc
Q 004518 595 DVSARGVDYPDVTLVIQVGLP---------SDREQYIHRLGRTGRKGK--EGQGILLLAP 643 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI~~d~p---------~s~~~y~Qr~GRagR~G~--~G~~~~l~s~ 643 (747)
..+++|+|.|.-.+|+. .+- -.|-.|.|++|||||.|- .|.++++...
T Consensus 664 ETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred hhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 99999999999777663 221 368899999999999994 5666666543
No 93
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.95 E-value=6e-27 Score=253.75 Aligned_cols=308 Identities=19% Similarity=0.195 Sum_probs=244.1
Q ss_pred CCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhC----------CCce--------EEEEeCCcchHHHHHHHhcC
Q 004518 345 PPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYH----------PSIG--------VQVVIGGTRLALEQKRMQAN 406 (747)
Q Consensus 345 ~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~----------~~~~--------~~~~~gg~~~~~~~~~l~~~ 406 (747)
....++|++++|+||||+|+|..|.++++.+.+++... ..+. ...-......+.+...++.+
T Consensus 27 ~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~G 106 (442)
T PF06862_consen 27 EDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSG 106 (442)
T ss_pred cchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCC
Confidence 34568999999999999999999999999888876331 0011 00001112344455555554
Q ss_pred C------------------------CcEEEECchhHHHHHHc---cccccccCCCccEEEEeCCccccCCCcHHHHHHHH
Q 004518 407 P------------------------CQILVATPGRLRDHIEN---TAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459 (747)
Q Consensus 407 ~------------------------~~IlV~Tpg~Ll~~l~~---~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il 459 (747)
+ +|||||+|..|...+.. +......|++|+++|||.||.|+ |+.|+++..++
T Consensus 107 N~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~ 185 (442)
T PF06862_consen 107 NNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVF 185 (442)
T ss_pred CccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHH
Confidence 4 79999999999999974 22233558999999999999887 77788888887
Q ss_pred HHCCCC------------------------CeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCc-----cccccceeE
Q 004518 460 AAVPKQ------------------------RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGS-----EETHEQVRQ 510 (747)
Q Consensus 460 ~~~~~~------------------------~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~-----~~~~~~i~~ 510 (747)
.+++.. +|+|++|+..++++..+...+|.+....+....... ......++|
T Consensus 186 ~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q 265 (442)
T PF06862_consen 186 EHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQ 265 (442)
T ss_pred HHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCce
Confidence 776532 799999999999999999998988766655443332 233446667
Q ss_pred EEEe-------cCcccchHHHHHHHHHHhh-cCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHH
Q 004518 511 MHLV-------APLDLHFPLLYVLLREHVA-DNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDE 582 (747)
Q Consensus 511 ~~~~-------~~~~~k~~~l~~~l~~~~~-~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~ 582 (747)
.+.. ...+.++.++...+.+.+. .....++|||+||+-+..++.++|++.++.++.+|.+.++.+..++...
T Consensus 266 ~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~ 345 (442)
T PF06862_consen 266 VFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQ 345 (442)
T ss_pred EEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHH
Confidence 6653 3456788998887777666 6666799999999999999999999999999999999999999999999
Q ss_pred HhcCCccEEEeeCCcc--cccCCCCccEEEEeCCCCChhhHHHhhccCCCCCC------cceEEEEeCcchHHHHHHhh
Q 004518 583 FRKSKGLILVTSDVSA--RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK------EGQGILLLAPWEEFFLSTIK 653 (747)
Q Consensus 583 F~~g~~~VLvaT~v~~--~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~------~G~~~~l~s~~e~~~l~~l~ 653 (747)
|..|+..||++|..++ +.+.|.||++||+|++|..+..|...+.-.+.... ...|.++|+.+|...|++|-
T Consensus 346 F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 346 FFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred HHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9999999999999988 89999999999999999999999888865544432 57899999999999888764
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=2e-26 Score=271.15 Aligned_cols=320 Identities=21% Similarity=0.199 Sum_probs=203.3
Q ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
...|+|+|+.+.........+|+.||||+|||.++++.+.. ++.... ..+++|.+||+++++++++++.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~~--------~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQGL--------ADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhCC--------CCeEEEECcHHHHHHHHHHHHHHH
Confidence 44799999988665445677999999999999997766553 433221 124999999999999999998875
Q ss_pred hhh-CCCceEEEEeCCcchHHHHH--------------------HHhc------CCCcEEEECchhHHHHHHcccccccc
Q 004518 379 LKY-HPSIGVQVVIGGTRLALEQK--------------------RMQA------NPCQILVATPGRLRDHIENTAGFATR 431 (747)
Q Consensus 379 ~~~-~~~~~~~~~~gg~~~~~~~~--------------------~l~~------~~~~IlV~Tpg~Ll~~l~~~~~~~~~ 431 (747)
+.. ++...+.+.+|......... ..+. --..|+|||...++..+...+.....
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 542 22345666666543221110 1111 01589999999887554432111111
Q ss_pred -C-CCccEEEEeCCccccCCCcHHHHHHHHHHC-CCCCeEEEEeccCChHHHHHHHHHhcCC--------ceeeeeccCC
Q 004518 432 -L-MGVKVLVLDEADHLLDMGFRKDIEKIIAAV-PKQRQTLLFSATVPEEVRQICHIALKRD--------HEFINTVEEG 500 (747)
Q Consensus 432 -L-~~i~~vIiDEAh~ll~~~f~~~l~~il~~~-~~~~q~il~SATl~~~v~~l~~~~~~~~--------~~~i~~~~~~ 500 (747)
+ -.-++|||||+|.+-. .....+..++..+ .....+|+||||+|..+.+.+...+... .+.+......
T Consensus 435 ~~~La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~ 513 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVN 513 (878)
T ss_pred HHhhccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccc
Confidence 0 0235899999998743 2333444444433 2346699999999988765433322110 1111110000
Q ss_pred c--cc---cc---cceeEEEEec----CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcc---ccce
Q 004518 501 S--EE---TH---EQVRQMHLVA----PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK---LNVR 565 (747)
Q Consensus 501 ~--~~---~~---~~i~~~~~~~----~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~---~~v~ 565 (747)
. .. .. .......... ........+...+..... .++++||||||+..+..+++.|++.. ..+.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ 591 (878)
T PRK09694 514 GAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDID 591 (878)
T ss_pred cceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEE
Confidence 0 00 00 0000110000 000111222233333222 34689999999999999999999764 6799
Q ss_pred eccCCCCHHHH----HHHHHHH-hcCC---ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCC
Q 004518 566 EIHSRKPQSYR----TRVSDEF-RKSK---GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK 633 (747)
Q Consensus 566 ~lh~~l~~~eR----~~v~~~F-~~g~---~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~ 633 (747)
.+||.++..+| .++++.| ++|+ ..|||||+++++|||| ++++||....| .+.++||+||++|.+.
T Consensus 592 llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 592 LFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999999 4677888 6666 4799999999999999 68999998888 7899999999999875
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=1.1e-26 Score=233.80 Aligned_cols=199 Identities=45% Similarity=0.675 Sum_probs=174.0
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEE
Q 004518 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLV 360 (747)
Q Consensus 281 f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLI 360 (747)
|+++++++.+.+.+..+|++.|+++|.++++.+++++++++++|||+|||++|++|+++.+.+... ..+++++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEE
Confidence 678999999999999999999999999999999999999999999999999999999999876531 13567999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEE
Q 004518 361 ICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVL 440 (747)
Q Consensus 361 l~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIi 440 (747)
++||++|+.|+...+..+.... ++.+..+.|+.........+ .++++|+|+||+.|.+.+.+.. ..+.+++++|+
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIv 149 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKL-KRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVL 149 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEE
Confidence 9999999999999999887654 67888888888766555444 3568999999999999988663 45788999999
Q ss_pred eCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCC
Q 004518 441 DEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRD 490 (747)
Q Consensus 441 DEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~ 490 (747)
||||.+.+.++...+..++..++..+|++++|||+++.+..++..++..+
T Consensus 150 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~ 199 (203)
T cd00268 150 DEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNP 199 (203)
T ss_pred eChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCC
Confidence 99999998889999999999999999999999999999988888877643
No 96
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=8.6e-26 Score=259.71 Aligned_cols=150 Identities=18% Similarity=0.312 Sum_probs=125.9
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCC
Q 004518 282 DQCSISALSLKGIK-----DAGYEKM---TIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR 353 (747)
Q Consensus 282 ~~l~l~~~l~~~l~-----~~g~~~~---t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 353 (747)
+.+.+.+.+.+.+. .+|+..| +|+|.++++.+..++++|++++||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 45677888888776 5788888 9999999999999999999999999999999999998886421
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccccccc--
Q 004518 354 PPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGFAT-- 430 (747)
Q Consensus 354 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~~~-- 430 (747)
.++||+||++||.|+++++..++++. ++++.+++||.+...+...+ .++|+|+||++| ++++..+. +..
T Consensus 137 ---~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~-~~~~~ 208 (970)
T PRK12899 137 ---PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNS-IATRK 208 (970)
T ss_pred ---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhCCC-CCcCH
Confidence 28899999999999999999999876 79999999999987665443 389999999999 99997652 111
Q ss_pred ---cCCCccEEEEeCCcccc
Q 004518 431 ---RLMGVKVLVLDEADHLL 447 (747)
Q Consensus 431 ---~L~~i~~vIiDEAh~ll 447 (747)
....+.++||||||.|+
T Consensus 209 ~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 209 EEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHhhcccccEEEEechhhhh
Confidence 12356899999999876
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.3e-25 Score=256.83 Aligned_cols=320 Identities=20% Similarity=0.221 Sum_probs=230.5
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.|+++|--..-.++.|+ |..+.||+|||+++.+|++-..+... .|-|++||..||.|.++++..++.
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-----------~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK-----------GVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC-----------CEEEEecCHHHHHHHHHHHHHHHh
Confidence 57888988776776664 99999999999999999964433221 277999999999999999999998
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccccc---cccCCCccEEEEeCCcccc-CC------
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGF---ATRLMGVKVLVLDEADHLL-DM------ 449 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~---~~~L~~i~~vIiDEAh~ll-~~------ 449 (747)
+. ++++.+++++.+........ .++|+|+||+.| .++|...... ...++.+.++||||||.|+ |.
T Consensus 148 ~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 148 FL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred hc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 87 89999999988766544433 389999999999 8888754211 1235789999999999865 21
Q ss_pred ---------CcHHHHHHHHHHCCCC-------------------------------------------------------
Q 004518 450 ---------GFRKDIEKIIAAVPKQ------------------------------------------------------- 465 (747)
Q Consensus 450 ---------~f~~~l~~il~~~~~~------------------------------------------------------- 465 (747)
.....+..+...+...
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 0112222222222110
Q ss_pred --------------------------------------------------------------CeEEEEeccCChHHHHHH
Q 004518 466 --------------------------------------------------------------RQTLLFSATVPEEVRQIC 483 (747)
Q Consensus 466 --------------------------------------------------------------~q~il~SATl~~~v~~l~ 483 (747)
.++.+||.|...+..++.
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 134556666544444333
Q ss_pred HHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcccc
Q 004518 484 HIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN 563 (747)
Q Consensus 484 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~ 563 (747)
..|-. + ++.+ +...+...... ...+......|+..+...+..... .+.++||||+|+..++.++..|.+.+++
T Consensus 384 ~iY~l-~--vv~I-Ptnkp~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 384 EIYNL-D--VVVI-PTNRPMIRIDH-PDLIYKTEKEKFDAVVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred HHhCC-C--EEEc-CCCCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 33321 1 1111 11100000000 112233445567777777765433 3459999999999999999999999999
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCC--------------------------------------
Q 004518 564 VREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPD-------------------------------------- 605 (747)
Q Consensus 564 v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~-------------------------------------- 605 (747)
+..||+. +.+|...+..|..+...|+||||+|+||+||+=
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 889999999999999999999999999999963
Q ss_pred ccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchH
Q 004518 606 VTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646 (747)
Q Consensus 606 V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~ 646 (747)
==|||-...|.|..--.|-.|||||.|.+|.+..|+|-.|.
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 12788888999999999999999999999999999987664
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.7e-25 Score=257.04 Aligned_cols=322 Identities=20% Similarity=0.237 Sum_probs=224.0
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
..|+++|.-+.-.++.|+ |..+.||+|||++..+|++...+.... |-|++||..||.|-++++..++
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~-----------v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKG-----------VHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCC-----------eEEEeccHHHHHhhHHHHHHHH
Confidence 368899988777777776 999999999999999998888765433 8999999999999999999999
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHH-HHHHcccc---ccccCCCccEEEEeCCcccc-CCC----
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLR-DHIENTAG---FATRLMGVKVLVLDEADHLL-DMG---- 450 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll-~~l~~~~~---~~~~L~~i~~vIiDEAh~ll-~~~---- 450 (747)
.+. ++++.++.++.+.... +... .+||+++|..-|- ++|..... -......+.+.||||||.++ |..
T Consensus 146 ~~L-Gl~vg~i~~~~~~~~r-~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 146 RWL-GLTVGLNLNSMSPDEK-RAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred Hhc-CCeEEEeCCCCCHHHH-HHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 987 8999999887655433 2222 3899999987652 33322100 01124578899999999865 210
Q ss_pred -----------cHHHHHHHHHHCCC-------------------C-----------------------------------
Q 004518 451 -----------FRKDIEKIIAAVPK-------------------Q----------------------------------- 465 (747)
Q Consensus 451 -----------f~~~l~~il~~~~~-------------------~----------------------------------- 465 (747)
+...+..+...+.. .
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 11111111111100 0
Q ss_pred --------------------------------------------------------------------------CeEEEE
Q 004518 466 --------------------------------------------------------------------------RQTLLF 471 (747)
Q Consensus 466 --------------------------------------------------------------------------~q~il~ 471 (747)
.++.+|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 123344
Q ss_pred eccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHH
Q 004518 472 SATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTR 551 (747)
Q Consensus 472 SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~ 551 (747)
|.|...+-.++...+.. + ++.+ +...+..... ....+......|...+...+..... .+.++||||+|+..++
T Consensus 382 TGTa~~e~~Ef~~iY~l-~--vv~I-Ptnkp~~r~d-~~d~i~~t~~~K~~al~~~i~~~~~--~g~pvLI~t~si~~se 454 (796)
T PRK12906 382 TGTAKTEEEEFREIYNM-E--VITI-PTNRPVIRKD-SPDLLYPTLDSKFNAVVKEIKERHA--KGQPVLVGTVAIESSE 454 (796)
T ss_pred CCCCHHHHHHHHHHhCC-C--EEEc-CCCCCeeeee-CCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHH
Confidence 44443332222222211 1 1111 0000000000 0011233344566666666654433 3569999999999999
Q ss_pred HHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCC---Ccc-----EEEEeCCCCChhhHHH
Q 004518 552 MVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP---DVT-----LVIQVGLPSDREQYIH 623 (747)
Q Consensus 552 ~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip---~V~-----~VI~~d~p~s~~~y~Q 623 (747)
.+++.|.+.++++..+|+.+...++..+...++.|. |+||||+|+||+||+ +|. +||+++.|.|...|.|
T Consensus 455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Q 532 (796)
T PRK12906 455 RLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQ 532 (796)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHH
Confidence 999999999999999999999888888888888887 999999999999994 899 9999999999999999
Q ss_pred hhccCCCCCCcceEEEEeCcchHH
Q 004518 624 RLGRTGRKGKEGQGILLLAPWEEF 647 (747)
Q Consensus 624 r~GRagR~G~~G~~~~l~s~~e~~ 647 (747)
+.|||||.|.+|.+..|++..|.-
T Consensus 533 l~GRtGRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 533 LRGRSGRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred HhhhhccCCCCcceEEEEeccchH
Confidence 999999999999999999887643
No 99
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=263.97 Aligned_cols=347 Identities=23% Similarity=0.260 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCC-CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcC
Q 004518 285 SISALSLKGIKDAGYEKMTIVQEATLPVLLKG-KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICP 363 (747)
Q Consensus 285 ~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~-~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~P 363 (747)
.++.+-..++. |...+..+|..+....+.+ .++++|||||+|||.++++-+|+.+-.+......-.....++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 34555555543 5566999999999988877 68999999999999999999999987766544444445678999999
Q ss_pred cHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCC
Q 004518 364 TRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEA 443 (747)
Q Consensus 364 tr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEA 443 (747)
.++|++.|...+.+.+..+ ++++.-.+|......++. ..++|+|+||+.. +.+.++.+.....+-++++||||.
T Consensus 373 mKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEI 446 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQI----EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEI 446 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhhh----hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhh
Confidence 9999999999888777766 788888888876544322 2379999999998 556554333344567899999999
Q ss_pred ccccCCCcHHHHHHHHHHC-------CCCCeEEEEeccCChHHHHHHHHHhcCCc-eeeeeccCCccccccceeEEEEec
Q 004518 444 DHLLDMGFRKDIEKIIAAV-------PKQRQTLLFSATVPEEVRQICHIALKRDH-EFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 444 h~ll~~~f~~~l~~il~~~-------~~~~q~il~SATl~~~v~~l~~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
|.+-+ .....++.|.... .....++++|||+|+-. . ...++..++ .+.... ...-+..+.|.++-.
T Consensus 447 HLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-D-V~~Fl~v~~~glf~fd---~syRpvPL~qq~Igi 520 (1674)
T KOG0951|consen 447 HLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-D-VASFLRVDPEGLFYFD---SSYRPVPLKQQYIGI 520 (1674)
T ss_pred hhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-h-hHHHhccCcccccccC---cccCcCCccceEecc
Confidence 97654 3445555554332 23578999999998642 1 222222222 222211 122223455555433
Q ss_pred C---cccchHHHHHHHHH-HhhcCCCCeEEEEecchhHHHHHHHHHHh--------------------------------
Q 004518 516 P---LDLHFPLLYVLLRE-HVADNPEYKVLVFCTTAMVTRMVADLLGE-------------------------------- 559 (747)
Q Consensus 516 ~---~~~k~~~l~~~l~~-~~~~~~~~k~LVF~~s~~~~~~l~~~L~~-------------------------------- 559 (747)
. ...++.++-+++-+ .+.....+++|||+.+++++...++.++.
T Consensus 521 ~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~ 600 (1674)
T KOG0951|consen 521 TEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNP 600 (1674)
T ss_pred ccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccCh
Confidence 2 23334433333222 22223346999999999988888777752
Q ss_pred -----ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEE----EeCC------CCChhhHHHh
Q 004518 560 -----LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI----QVGL------PSDREQYIHR 624 (747)
Q Consensus 560 -----~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI----~~d~------p~s~~~y~Qr 624 (747)
+.+.++.+|++|+..+|..+.+.|.+|.++|||+|-.+++|+++|+-+++| -|++ +-++.+..||
T Consensus 601 dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qm 680 (1674)
T KOG0951|consen 601 DLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQM 680 (1674)
T ss_pred hHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHH
Confidence 135689999999999999999999999999999999999999999988777 3554 3478899999
Q ss_pred hccCCCCCC--cceEEEEeCcch
Q 004518 625 LGRTGRKGK--EGQGILLLAPWE 645 (747)
Q Consensus 625 ~GRagR~G~--~G~~~~l~s~~e 645 (747)
.|||||-+- .|.++++-...+
T Consensus 681 lgragrp~~D~~gegiiit~~se 703 (1674)
T KOG0951|consen 681 LGRAGRPQYDTCGEGIIITDHSE 703 (1674)
T ss_pred HhhcCCCccCcCCceeeccCchH
Confidence 999999873 455555544455
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=3.8e-26 Score=254.99 Aligned_cols=303 Identities=24% Similarity=0.283 Sum_probs=202.7
Q ss_pred CCCcHHHHHHHHHHHC----CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLK----GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~----~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
..++++|++++..+.+ ++..++++|||+|||.+++..+ ..+. ..+|||+||++|+.||++.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~~-------------~~~Lvlv~~~~L~~Qw~~~~ 100 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AELK-------------RSTLVLVPTKELLDQWAEAL 100 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHhc-------------CCEEEEECcHHHHHHHHHHH
Confidence 4589999999999988 8899999999999999755443 3331 12999999999999998766
Q ss_pred HHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHH--HHccccccccCCCccEEEEeCCccccCCCcHH
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDH--IENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~--l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~ 453 (747)
....... ..+..+.++.. .. .. ..|.|+|...+... +.. +....+.+||+||||++....+..
T Consensus 101 ~~~~~~~--~~~g~~~~~~~-~~------~~-~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~Hh~~a~~~~~ 165 (442)
T COG1061 101 KKFLLLN--DEIGIYGGGEK-EL------EP-AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVHHLPAPSYRR 165 (442)
T ss_pred HHhcCCc--cccceecCcee-cc------CC-CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccccCCcHHHHH
Confidence 6654321 12333333332 21 00 36999999988764 221 223468999999999998766555
Q ss_pred HHHHHHHHCCCCCeEEEEeccCChHHH-HHHHHHhcCCceeeeec-cCC-ccccccceeEEEEec---------------
Q 004518 454 DIEKIIAAVPKQRQTLLFSATVPEEVR-QICHIALKRDHEFINTV-EEG-SEETHEQVRQMHLVA--------------- 515 (747)
Q Consensus 454 ~l~~il~~~~~~~q~il~SATl~~~v~-~l~~~~~~~~~~~i~~~-~~~-~~~~~~~i~~~~~~~--------------- 515 (747)
....+....+ +++||||++.... .....+....+...... ... ............+..
T Consensus 166 ~~~~~~~~~~----~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 166 ILELLSAAYP----RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred HHHhhhcccc----eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhh
Confidence 4433333222 8999999764441 21111111111111100 000 000000111111100
Q ss_pred -----------------------CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCC
Q 004518 516 -----------------------PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKP 572 (747)
Q Consensus 516 -----------------------~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~ 572 (747)
....+...+..++..+. ...++||||.+..++..++..|...++ +..+.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~ 317 (442)
T COG1061 242 RFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA---RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETP 317 (442)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc---CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCC
Confidence 00111111222222221 345999999999999999999988877 889999999
Q ss_pred HHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCC-CCCcceEEE
Q 004518 573 QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGR-KGKEGQGIL 639 (747)
Q Consensus 573 ~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR-~G~~G~~~~ 639 (747)
+.+|..+++.|+.|..++||++.++..|+|+|+++++|......|+..|+||+||.-| ...++.|.+
T Consensus 318 ~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~ 385 (442)
T COG1061 318 KEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLA 385 (442)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999 333444333
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.6e-25 Score=253.04 Aligned_cols=291 Identities=20% Similarity=0.236 Sum_probs=193.1
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHH
Q 004518 320 LAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399 (747)
Q Consensus 320 lv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~ 399 (747)
++.|+||||||.+|+..+...+ .. +.++||++|+++|+.|+++.+++.+ +..+.+++++.+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~----------g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL----------GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc----------CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHH
Confidence 4789999999999866554443 22 2349999999999999999998754 3456677777654332
Q ss_pred ---HHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC------cHHHHHHHHHHCCCCCeEEE
Q 004518 400 ---QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG------FRKDIEKIIAAVPKQRQTLL 470 (747)
Q Consensus 400 ---~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~------f~~~l~~il~~~~~~~q~il 470 (747)
...+..+..+|+|+|+..+. ..+.++++|||||+|....++ ....+..... .....++|+
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-~~~~~~vil 134 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-KKFNCPVVL 134 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH-HhcCCCEEE
Confidence 23445567899999988662 346789999999999876433 1223333333 335788999
Q ss_pred EeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCc--ccchHHHHHHHHHHhhcCCCCeEEEEecchh
Q 004518 471 FSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL--DLHFPLLYVLLREHVADNPEYKVLVFCTTAM 548 (747)
Q Consensus 471 ~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~ 548 (747)
+|||...+....+. ......+.............+.-....... ..-...+...+.+.+.. +.++|||+|++.
T Consensus 135 ~SATPsles~~~~~---~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrG 209 (505)
T TIGR00595 135 GSATPSLESYHNAK---QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRG 209 (505)
T ss_pred EeCCCCHHHHHHHh---cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCc
Confidence 99997655433321 111122211111101111111111110000 11123456666666554 348999966532
Q ss_pred H------------------------------------------------------------HHHHHHHHHhc--ccccee
Q 004518 549 V------------------------------------------------------------TRMVADLLGEL--KLNVRE 566 (747)
Q Consensus 549 ~------------------------------------------------------------~~~l~~~L~~~--~~~v~~ 566 (747)
- ++++.+.|++. +.++..
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~ 289 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIAR 289 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEE
Confidence 1 46667777766 678999
Q ss_pred ccCCCCHHHH--HHHHHHHhcCCccEEEeeCCcccccCCCCccEEE--EeCC----CC------ChhhHHHhhccCCCCC
Q 004518 567 IHSRKPQSYR--TRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVI--QVGL----PS------DREQYIHRLGRTGRKG 632 (747)
Q Consensus 567 lh~~l~~~eR--~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI--~~d~----p~------s~~~y~Qr~GRagR~G 632 (747)
+|+++++.++ ..+++.|.+|+..|||+|+++++|+|+|+|++|+ ++|. |. ..+.|+|++||+||.+
T Consensus 290 ~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 290 IDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred EecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC
Confidence 9999987766 8999999999999999999999999999999986 5553 21 2467899999999999
Q ss_pred CcceEEEEe
Q 004518 633 KEGQGILLL 641 (747)
Q Consensus 633 ~~G~~~~l~ 641 (747)
..|.+++..
T Consensus 370 ~~g~viiqt 378 (505)
T TIGR00595 370 DPGQVIIQT 378 (505)
T ss_pred CCCEEEEEe
Confidence 999988654
No 102
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=5.4e-25 Score=243.96 Aligned_cols=325 Identities=20% Similarity=0.254 Sum_probs=239.7
Q ss_pred CCCHHHHHH-HHHCCCCCCcHHHHHHHHHHHCC------CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 285 SISALSLKG-IKDAGYEKMTIVQEATLPVLLKG------KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 285 ~l~~~l~~~-l~~~g~~~~t~iQ~~~i~~il~~------~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
+.+..+++. +..+.| ++|..|+.++..|... .+-+++|.-|||||+++++.++..+-. |.+
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----------G~Q 313 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----------GYQ 313 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----------CCe
Confidence 344444444 455677 5999999999988764 356899999999999999998887642 345
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchH---HHHHHHhcCCCcEEEECchhHHHHHHccccccccCCC
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA---LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMG 434 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~ 434 (747)
+...+||-.||.|-++.+.+++... ++.+..++|...-. .....+..+..+|+|+|..-+ +.. ..+++
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~----V~F~~ 384 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDK----VEFHN 384 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hcc----eeecc
Confidence 9999999999999999999998866 68999999876543 344567778899999996543 222 45678
Q ss_pred ccEEEEeCCccccCCCcHHHHHHHHHHCCC-CCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEE
Q 004518 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPK-QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l~~il~~~~~-~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 513 (747)
+.++|+||-|+.. -.=...+..... ...+++||||.-|-.-.+.. +-..+..+|...+.... .+ +++
T Consensus 385 LgLVIiDEQHRFG-----V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~-fgDldvS~IdElP~GRk----pI-~T~- 452 (677)
T COG1200 385 LGLVIIDEQHRFG-----VHQRLALREKGEQNPHVLVMTATPIPRTLALTA-FGDLDVSIIDELPPGRK----PI-TTV- 452 (677)
T ss_pred eeEEEEecccccc-----HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH-hccccchhhccCCCCCC----ce-EEE-
Confidence 9999999999854 333334444445 57799999997544322221 11113333332222111 11 112
Q ss_pred ecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHH--------HHHHHHHHhc--cccceeccCCCCHHHHHHHHHHH
Q 004518 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVT--------RMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEF 583 (747)
Q Consensus 514 ~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~--------~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F 583 (747)
+-...+...++..+...+.+ +.++.|.||-+++. ..++..|+.. ++++..+||.|+..+..+++..|
T Consensus 453 -~i~~~~~~~v~e~i~~ei~~--GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~F 529 (677)
T COG1200 453 -VIPHERRPEVYERIREEIAK--GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAF 529 (677)
T ss_pred -EeccccHHHHHHHHHHHHHc--CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHH
Confidence 22335566666777777664 45899999866544 4556666643 56799999999999999999999
Q ss_pred hcCCccEEEeeCCcccccCCCCccEEEEeCCC-CChhhHHHhhccCCCCCCcceEEEEeCcch
Q 004518 584 RKSKGLILVTSDVSARGVDYPDVTLVIQVGLP-SDREQYIHRLGRTGRKGKEGQGILLLAPWE 645 (747)
Q Consensus 584 ~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p-~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e 645 (747)
++|+.+|||||.|.+.|||+|+.+++|.++.- ...++.-|--||+||.+.++.|++++.+..
T Consensus 530 k~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 530 KEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999999999999988764 367888999999999999999999998654
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=9e-25 Score=221.28 Aligned_cols=327 Identities=18% Similarity=0.225 Sum_probs=224.2
Q ss_pred CCcHHHHHHHHH----HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPV----LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 301 ~~t~iQ~~~i~~----il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
++++.|+.+-.. +.+.++.||+|-||+|||.+ +.+.++..++++ .+|.|..|+...|.+++.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC----------CeEEEecCcccchHHHHHHHH
Confidence 589999887654 45568999999999999986 556667766553 459999999999999999887
Q ss_pred HHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHH
Q 004518 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIE 456 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~ 456 (747)
.-+ ++..+.+++|++.... ...++|||...|++.-+ .++++||||+|...-........
T Consensus 166 ~aF---~~~~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk~----------aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 166 QAF---SNCDIDLLYGDSDSYF--------RAPLVVATTHQLLRFKQ----------AFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred Hhh---ccCCeeeEecCCchhc--------cccEEEEehHHHHHHHh----------hccEEEEeccccccccCCHHHHH
Confidence 654 3678888998876432 16899999999987643 46899999999875332222222
Q ss_pred HHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccch------HHHHHHHHH
Q 004518 457 KIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHF------PLLYVLLRE 530 (747)
Q Consensus 457 ~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~------~~l~~~l~~ 530 (747)
.+.....+.--+|.+|||.+.++..-+... ....+..... .......+..+....+.+.+. ..|...|..
T Consensus 225 Av~~ark~~g~~IylTATp~k~l~r~~~~g---~~~~~klp~R-fH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lek 300 (441)
T COG4098 225 AVKKARKKEGATIYLTATPTKKLERKILKG---NLRILKLPAR-FHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEK 300 (441)
T ss_pred HHHHhhcccCceEEEecCChHHHHHHhhhC---CeeEeecchh-hcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHH
Confidence 333444556679999999998876544332 1111221111 111111223333333333332 245556655
Q ss_pred HhhcCCCCeEEEEecchhHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccE
Q 004518 531 HVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTL 608 (747)
Q Consensus 531 ~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~ 608 (747)
+.. .+.+++||+|++...+.++..|+.. ...+..+|+... .|.+..+.|++|...+||+|.+++||+++|+|++
T Consensus 301 q~~--~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV 376 (441)
T COG4098 301 QRK--TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVDV 376 (441)
T ss_pred HHh--cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccceE
Confidence 543 3469999999999999999999543 334577888644 5899999999999999999999999999999998
Q ss_pred EEEeC--CCCChhhHHHhhccCCCCCC--cceEEEEeCcchHHHHHHhhhCCCccCCCCCCCchhHHHHHHHHHHHHHhc
Q 004518 609 VIQVG--LPSDREQYIHRLGRTGRKGK--EGQGILLLAPWEEFFLSTIKDLPILKAPVPSVDPDTKKKVERALSHVEMKN 684 (747)
Q Consensus 609 VI~~d--~p~s~~~y~Qr~GRagR~G~--~G~~~~l~s~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (747)
+|.-. .-.+.+..+|.+||+||.-. .|.++.|- ....+.+.++.+++..+|
T Consensus 377 ~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH-------------------------~G~skaM~~A~keIk~MN 431 (441)
T COG4098 377 FVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH-------------------------YGKSKAMKQARKEIKEMN 431 (441)
T ss_pred EEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe-------------------------ccchHHHHHHHHHHHHHH
Confidence 76432 22578899999999999753 34444332 122355667777777777
Q ss_pred HHHHHHHH
Q 004518 685 KEAAYQAW 692 (747)
Q Consensus 685 ~~~a~~s~ 692 (747)
.....+.|
T Consensus 432 ~lg~k~~~ 439 (441)
T COG4098 432 KLGFKRGL 439 (441)
T ss_pred HHhhhccc
Confidence 65554443
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.1e-25 Score=262.13 Aligned_cols=319 Identities=19% Similarity=0.254 Sum_probs=233.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 004518 295 KDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374 (747)
Q Consensus 295 ~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 374 (747)
...+| .+.++|++++..|..+..|++|||||+|||.+.-.++...+... .+++++.|.++|.+|.++.
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-----------qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG-----------QRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-----------CceEeccchhhhhhhHHHH
Confidence 45566 58999999999999999999999999999998777666665422 2399999999999999998
Q ss_pred HHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHH
Q 004518 375 ASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKD 454 (747)
Q Consensus 375 ~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~ 454 (747)
+...+... .-.+++.+|+.+++ +++.|+|+|.+.|..++..+. ..+..+++||+||+|.|.+......
T Consensus 182 l~~~fgdv-~~~vGL~TGDv~IN--------~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~V 249 (1041)
T COG4581 182 LLAKFGDV-ADMVGLMTGDVSIN--------PDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVV 249 (1041)
T ss_pred HHHHhhhh-hhhccceecceeeC--------CCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchh
Confidence 87765422 22457888887754 457999999999999998773 4478999999999999999999999
Q ss_pred HHHHHHHCCCCCeEEEEeccCChHHH--HHHHHHhcCCceeeeeccCCccccccceeEEEE-------ecCcccch----
Q 004518 455 IEKIIAAVPKQRQTLLFSATVPEEVR--QICHIALKRDHEFINTVEEGSEETHEQVRQMHL-------VAPLDLHF---- 521 (747)
Q Consensus 455 l~~il~~~~~~~q~il~SATl~~~v~--~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~-------~~~~~~k~---- 521 (747)
|+.++-++|...++++||||+++..+ .++...-..+..++....... .+.++++ ..+...++
T Consensus 250 WEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rpv-----PL~~~~~~~~~l~~lvde~~~~~~~~ 324 (1041)
T COG4581 250 WEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPV-----PLEHFVYVGKGLFDLVDEKKKFNAEN 324 (1041)
T ss_pred HHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCC-----CeEEEEecCCceeeeecccccchhhc
Confidence 99999999999999999999976543 333322222333333222211 1111111 11111100
Q ss_pred -H-HH--------------------------------------HHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-
Q 004518 522 -P-LL--------------------------------------YVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL- 560 (747)
Q Consensus 522 -~-~l--------------------------------------~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~- 560 (747)
. .. ..++... ......++|+|+-++..|+..+..+...
T Consensus 325 ~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l-~~~~~lP~I~F~FSr~~Ce~~a~~~~~ld 403 (1041)
T COG4581 325 FPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKL-DKDNLLPAIVFSFSRRGCEEAAQILSTLD 403 (1041)
T ss_pred chhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhh-hhhcCCceEEEEEchhhHHHHHHHhcccc
Confidence 0 00 1112111 1122348999999999999888777531
Q ss_pred ---------------------------cc-------------cceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccc
Q 004518 561 ---------------------------KL-------------NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARG 600 (747)
Q Consensus 561 ---------------------------~~-------------~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~G 600 (747)
++ .+.++|++|=+..+..+...|..|-++||+||.+++.|
T Consensus 404 l~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~G 483 (1041)
T COG4581 404 LVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIG 483 (1041)
T ss_pred cccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhh
Confidence 11 25678999999999999999999999999999999999
Q ss_pred cCCCCccEEE----EeC----CCCChhhHHHhhccCCCCCC--cceEEEEeCc
Q 004518 601 VDYPDVTLVI----QVG----LPSDREQYIHRLGRTGRKGK--EGQGILLLAP 643 (747)
Q Consensus 601 iDip~V~~VI----~~d----~p~s~~~y~Qr~GRagR~G~--~G~~~~l~s~ 643 (747)
+|+|.-++|+ .++ ..-++..|.|+.|||||.|. .|+++++-.+
T Consensus 484 iNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 484 INMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred cCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 9999877665 122 23478999999999999995 5777777443
No 105
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=235.92 Aligned_cols=329 Identities=16% Similarity=0.146 Sum_probs=231.6
Q ss_pred cCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
.+.|...+.++...+-+++..--..+..+.+-+..+.+++.+++.|+||||||++.-..++...+... ..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~ 93 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TG 93 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cc
Confidence 56688888899988888876555667777888899999999999999999999932222333332221 23
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccE
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
|.+++|+|..|.+++.++.+-..-.-+-.++..+.-.+.. ..++-..+||.|+|++..+.+ ..|..+.+
T Consensus 94 v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~-------~~~T~Lky~tDgmLlrEams~----p~l~~y~v 162 (699)
T KOG0925|consen 94 VACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCT-------SPNTLLKYCTDGMLLREAMSD----PLLGRYGV 162 (699)
T ss_pred eeecCchHHHHHHHHHHHHHHhccccchhccccccccccC-------ChhHHHHHhcchHHHHHHhhC----cccccccE
Confidence 8999999999999998766544321122222221111111 111234489999999999887 45789999
Q ss_pred EEEeCCcccc-CCC-cHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEec
Q 004518 438 LVLDEADHLL-DMG-FRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVA 515 (747)
Q Consensus 438 vIiDEAh~ll-~~~-f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 515 (747)
||+||||+-. ..+ ..-.+..++... ++.++|+||||+... .++.++.+. +++.+.. ...+..+|...
T Consensus 163 iiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~-Pll~vpg------~~PvEi~Yt~e 231 (699)
T KOG0925|consen 163 IILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNA-PLLAVPG------THPVEIFYTPE 231 (699)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCC-CeeecCC------CCceEEEecCC
Confidence 9999999632 222 122233333333 589999999998654 344555543 3443321 22455566666
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc---------cccceeccCCCCHHHHHHHHHHHhcC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL---------KLNVREIHSRKPQSYRTRVSDEFRKS 586 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~l~~~eR~~v~~~F~~g 586 (747)
+..+.++.....+.+......++-+|||+++.++++..++.+... .+.|.++| +.++.++|+.-...
T Consensus 232 ~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~ 307 (699)
T KOG0925|consen 232 PERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEK 307 (699)
T ss_pred CChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcc
Confidence 666666666666666656666789999999999999988888743 36788899 66667777665432
Q ss_pred -----CccEEEeeCCcccccCCCCccEEEEeCC------------------CCChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 587 -----KGLILVTSDVSARGVDYPDVTLVIQVGL------------------PSDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 587 -----~~~VLvaT~v~~~GiDip~V~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
.++|+|+|+++++++.|++|.+||+-|+ |.|.++..||.|||||. .+|.|+.+|+.
T Consensus 308 ~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 308 RNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 3689999999999999999999997654 56888999999999998 69999999975
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.4e-24 Score=246.43 Aligned_cols=320 Identities=18% Similarity=0.192 Sum_probs=221.2
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.++++|-..--.+++| -|+.++||.|||++|.+|++..++... .|.||+|++.||.|.++++..++.
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~-----------~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGK-----------GVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5778887665556555 489999999999999999988776433 299999999999999999999999
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHcccccc---ccCCCccEEEEeCCccccCCC------
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGFA---TRLMGVKVLVLDEADHLLDMG------ 450 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~~---~~L~~i~~vIiDEAh~ll~~~------ 450 (747)
+. ++++.++.++.+... +...-.++|+++||+.| .++|....... .....+.++||||||.++...
T Consensus 149 ~l-Glsv~~i~~~~~~~~---r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 149 FL-GLTVGINVAGLGQQE---KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred hc-CCeEEEecCCCCHHH---HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 87 899999999877532 22233589999999999 88886542111 123678999999999865310
Q ss_pred ----------cHHHHHHHHHHCC-------------------CCCe----------------------------------
Q 004518 451 ----------FRKDIEKIIAAVP-------------------KQRQ---------------------------------- 467 (747)
Q Consensus 451 ----------f~~~l~~il~~~~-------------------~~~q---------------------------------- 467 (747)
+...+..+...+. ...+
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 1111111111110 0111
Q ss_pred --------------------------------------------------------------------------------
Q 004518 468 -------------------------------------------------------------------------------- 467 (747)
Q Consensus 468 -------------------------------------------------------------------------------- 467 (747)
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence
Q ss_pred --EEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEec
Q 004518 468 --TLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCT 545 (747)
Q Consensus 468 --~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~ 545 (747)
+.+||.|...+..++...|-. +...+ +...+...... .-.+......|+..+..-+...... +.++||||.
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l-~Vv~I---PTnkp~~R~d~-~d~iy~t~~~K~~Aii~ei~~~~~~--GrpVLV~t~ 457 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGL-DTVVV---PTNRPMVRKDM-ADLVYLTADEKYQAIIKDIKDCRER--GQPVLVGTV 457 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCC-CEEEC---CCCCCccceeC-CCcEEeCHHHHHHHHHHHHHHHHHc--CCCEEEEeC
Confidence 222222222222111111110 00000 00000000000 0012223344555555555544443 459999999
Q ss_pred chhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCC---------------------
Q 004518 546 TAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP--------------------- 604 (747)
Q Consensus 546 s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip--------------------- 604 (747)
|...++.++.+|...++.+..||+.+.+.++..+...|+.|. |+||||+|+||+||.
T Consensus 458 sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~ 535 (908)
T PRK13107 458 SIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKA 535 (908)
T ss_pred cHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHH
Confidence 999999999999999999999999999999999999999999 999999999999995
Q ss_pred ----------------CccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchH
Q 004518 605 ----------------DVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646 (747)
Q Consensus 605 ----------------~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~ 646 (747)
|==+||-...+.|..--.|-.|||||.|.+|.+..|+|-.|.
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 223788888999999999999999999999999999987664
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=2.3e-23 Score=252.09 Aligned_cols=325 Identities=18% Similarity=0.197 Sum_probs=199.3
Q ss_pred CCcHHHHHHHHHHH----C-CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLL----K-GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 301 ~~t~iQ~~~i~~il----~-~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
.++++|.+++..+. + .+.++++++||||||.+ .+.++..+++... ..+||||+|+++|+.|+.+.+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~~~--------~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKAKR--------FRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhcCc--------cCeEEEEecHHHHHHHHHHHH
Confidence 58999999997765 2 36799999999999987 3445555654432 235999999999999999988
Q ss_pred HHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccc--ccccCCCccEEEEeCCccccC-----
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAG--FATRLMGVKVLVLDEADHLLD----- 448 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~--~~~~L~~i~~vIiDEAh~ll~----- 448 (747)
..+.-.. ...+..+++..... .........|+|+|...|...+..... ....+..+++|||||||+-..
T Consensus 484 ~~~~~~~-~~~~~~i~~i~~L~---~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 484 KDTKIEG-DQTFASIYDIKGLE---DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred Hhccccc-ccchhhhhchhhhh---hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 8752211 11111111111100 111223469999999998776532211 113456789999999998531
Q ss_pred ----C------CcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHH-------------HhcC---Cceeeee-cc-CC
Q 004518 449 ----M------GFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHI-------------ALKR---DHEFINT-VE-EG 500 (747)
Q Consensus 449 ----~------~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~-------------~~~~---~~~~i~~-~~-~~ 500 (747)
. ++...+..++.+.. ...|+||||+......++.. .... ++..+.. .. ..
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 1 12456777777653 45899999985433222110 0000 0000000 00 00
Q ss_pred ----cccccccee----EEE-EecCcc---------------cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHH
Q 004518 501 ----SEETHEQVR----QMH-LVAPLD---------------LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADL 556 (747)
Q Consensus 501 ----~~~~~~~i~----~~~-~~~~~~---------------~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~ 556 (747)
.......+. ... ...+.+ .....+...+..++....++++||||.+..+|+.++..
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 000000000 000 000000 00011112222333333347999999999999999988
Q ss_pred HHhc------cc---cceeccCCCCHHHHHHHHHHHhcCCc-cEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhc
Q 004518 557 LGEL------KL---NVREIHSRKPQSYRTRVSDEFRKSKG-LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLG 626 (747)
Q Consensus 557 L~~~------~~---~v~~lh~~l~~~eR~~v~~~F~~g~~-~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~G 626 (747)
|.+. ++ .+..+||.++. +..+++.|+++.. .|+|+++++.+|+|+|.|.+||++.++.|...|+|++|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 7753 12 45668888864 6789999999887 68999999999999999999999999999999999999
Q ss_pred cCCCCCC--cceEEEEeC
Q 004518 627 RTGRKGK--EGQGILLLA 642 (747)
Q Consensus 627 RagR~G~--~G~~~~l~s 642 (747)
|+.|.-. .....+++.
T Consensus 796 RgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 796 RATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred hhccCCccCCCceEEEEe
Confidence 9999743 133444444
No 108
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=2.2e-22 Score=234.78 Aligned_cols=320 Identities=17% Similarity=0.179 Sum_probs=232.9
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHHHCC------CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE
Q 004518 287 SALSLKGIKD-AGYEKMTIVQEATLPVLLKG------KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVL 359 (747)
Q Consensus 287 ~~~l~~~l~~-~g~~~~t~iQ~~~i~~il~~------~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vL 359 (747)
+......+.. ++| .-|+=|..+|..+... .|-+|||.-|-|||-+++=+++..++.. .+|.
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-----------KQVA 647 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-----------KQVA 647 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------CeEE
Confidence 3344444433 444 3589999999887653 5789999999999999888877777543 3599
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchH---HHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCcc
Q 004518 360 VICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA---LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436 (747)
Q Consensus 360 Il~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~ 436 (747)
|++||--||+|-++.+++-+..+ .+++..+.--.+.+ .-.+.+..+..||||+|. ++|.++ ..++++.
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~kd----v~FkdLG 718 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSKD----VKFKDLG 718 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhCCC----cEEecCC
Confidence 99999999999999999887766 46666654333322 233566778899999994 344444 5567999
Q ss_pred EEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC
Q 004518 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 437 ~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
++||||=|+.. ....+.+.. +..+.-++-||||.-|-.-.+.-..++ +..+|.+.+.. ..-.++++...
T Consensus 719 LlIIDEEqRFG-Vk~KEkLK~----Lr~~VDvLTLSATPIPRTL~Msm~GiR-dlSvI~TPP~~-----R~pV~T~V~~~ 787 (1139)
T COG1197 719 LLIIDEEQRFG-VKHKEKLKE----LRANVDVLTLSATPIPRTLNMSLSGIR-DLSVIATPPED-----RLPVKTFVSEY 787 (1139)
T ss_pred eEEEechhhcC-ccHHHHHHH----HhccCcEEEeeCCCCcchHHHHHhcch-hhhhccCCCCC-----CcceEEEEecC
Confidence 99999999865 334444444 445666999999985554444433333 23333332211 11123333222
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc--cccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL--KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~--~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
. -..+...|...+. .++++-..+|.++.++.++..|+++ ...+.+.||.|+..+-.+++..|-+|+.+|||||
T Consensus 788 d---~~~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 788 D---DLLIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred C---hHHHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 2 1233444443333 3568888889999999999999987 4578999999999999999999999999999999
Q ss_pred CCcccccCCCCccEEEEeCCC-CChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 595 DVSARGVDYPDVTLVIQVGLP-SDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI~~d~p-~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
.+.+.|||||+++.+|.-+.- ...++..|.-||+||..+.+.||.++.+
T Consensus 863 TIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 863 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred eeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 999999999999999966554 3678999999999999999999999975
No 109
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=1.9e-23 Score=203.60 Aligned_cols=166 Identities=34% Similarity=0.555 Sum_probs=139.5
Q ss_pred cHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhC
Q 004518 303 TIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYH 382 (747)
Q Consensus 303 t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 382 (747)
||+|.++++.+.++++++++||||+|||++|++++++.+.+.+ ..+++|++|+++|+.|+++.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~- 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSN- 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeecccccccccccccccccc-
Confidence 7899999999999999999999999999999999999987652 125999999999999999999998776
Q ss_pred CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHC
Q 004518 383 PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV 462 (747)
Q Consensus 383 ~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~ 462 (747)
.++.+..++++.....+......+.++|+|+||++|.+.+.... ..+.++++||+||+|.+..+.+...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 46788888888876644444445668999999999999998742 245569999999999999888888899888887
Q ss_pred C--CCCeEEEEeccCChHHHH
Q 004518 463 P--KQRQTLLFSATVPEEVRQ 481 (747)
Q Consensus 463 ~--~~~q~il~SATl~~~v~~ 481 (747)
. .+.|+++||||++..++.
T Consensus 148 ~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp HTTTTSEEEEEESSSTHHHHH
T ss_pred cCCCCCcEEEEeeCCChhHhh
Confidence 3 358999999999976654
No 110
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=1.9e-22 Score=239.79 Aligned_cols=321 Identities=17% Similarity=0.176 Sum_probs=209.5
Q ss_pred CCcHHHHHHHHHHH----CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLL----KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 301 ~~t~iQ~~~i~~il----~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
++.++|.+++.++. ++.++|++.++|.|||++. +.++..+..... . ...+|||||. .+..+|.+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~------~-~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRG------I-TGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcC------C-CCCEEEEeCh-HHHHHHHHHHH
Confidence 68899999998875 5678999999999999974 334444433211 1 1238999996 56678888887
Q ss_pred HHhhhCCCceEEEEeCCcchHHHHH--HHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHH
Q 004518 377 TLLKYHPSIGVQVVIGGTRLALEQK--RMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKD 454 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~ 454 (747)
+++ |.+.+..++|......... .+..+.++|+|+|++.+...... +.-..+.+|||||||++.+.. ..
T Consensus 240 kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~~--Sk 309 (1033)
T PLN03142 240 RFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNEN--SL 309 (1033)
T ss_pred HHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCHH--HH
Confidence 764 5667767766544322221 22335589999999998765432 112368899999999988643 23
Q ss_pred HHHHHHHCCCCCeEEEEeccCC-hHHHH---HHHHHhc------------------------------------------
Q 004518 455 IEKIIAAVPKQRQTLLFSATVP-EEVRQ---ICHIALK------------------------------------------ 488 (747)
Q Consensus 455 l~~il~~~~~~~q~il~SATl~-~~v~~---l~~~~~~------------------------------------------ 488 (747)
+...+..+... ..+++|+|+- +.+.+ ++.....
T Consensus 310 lskalr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 310 LSKTMRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred HHHHHHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 34444444433 3578999962 11111 1111000
Q ss_pred -----CCceeeeeccCCccc-------------------------ccc---ceeE----EEE---------------ecC
Q 004518 489 -----RDHEFINTVEEGSEE-------------------------THE---QVRQ----MHL---------------VAP 516 (747)
Q Consensus 489 -----~~~~~i~~~~~~~~~-------------------------~~~---~i~~----~~~---------------~~~ 516 (747)
.|+.....+...... ... .+++ -++ ...
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 000000000000000 000 0000 000 000
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcC---CccEEEe
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS---KGLILVT 593 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g---~~~VLva 593 (747)
...|+.+|..++..... .+.++|||+........|..+|...++.+..|||.++..+|..+++.|... ...+|++
T Consensus 469 ~SgKl~lLdkLL~~Lk~--~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKE--RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhhHHHHHHHHHHHHHh--cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 11233444444444322 346999999999999999999999999999999999999999999999753 3467899
Q ss_pred eCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEE--EEeCc
Q 004518 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGI--LLLAP 643 (747)
Q Consensus 594 T~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~--~l~s~ 643 (747)
|.+++.|||+..+++||+||++|||..+.|++||+.|.|+...|. .|++.
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 999999999999999999999999999999999999999876554 44444
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=229.46 Aligned_cols=341 Identities=23% Similarity=0.259 Sum_probs=227.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHH--HHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHH
Q 004518 289 LSLKGIKDAGYEKMTIVQEATL--PVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRE 366 (747)
Q Consensus 289 ~l~~~l~~~g~~~~t~iQ~~~i--~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 366 (747)
...-..+..|+..++.||.+++ +.++.++++|+.+||+.|||++..+-++..++..+. .++.+.|-..
T Consensus 211 ~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~llilp~vs 280 (1008)
T KOG0950|consen 211 VSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLLILPYVS 280 (1008)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeEecceee
Confidence 3334456678999999999998 778899999999999999999998888887764432 2888999888
Q ss_pred HHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccc
Q 004518 367 LATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHL 446 (747)
Q Consensus 367 La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~l 446 (747)
.++.-...+..+.... ++.+..+.|....... ...-++.|||-++-..++..--. .-.+..+.+|||||.|.+
T Consensus 281 iv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~-----~k~~sv~i~tiEkanslin~lie-~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDL-GFPVEEYAGRFPPEKR-----RKRESVAIATIEKANSLINSLIE-QGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred hhHHHHhhhhhhcccc-CCcchhhcccCCCCCc-----ccceeeeeeehHhhHhHHHHHHh-cCCccccCcEEEeeeeee
Confidence 8877777776665544 6666666655443221 11258999999886544432100 023567899999999999
Q ss_pred cCCCcHHHHHHHHHHC-----CCCCeEEEEeccCChH--HHHHHHHHhcC----CceeeeeccCC-------ccccccce
Q 004518 447 LDMGFRKDIEKIIAAV-----PKQRQTLLFSATVPEE--VRQICHIALKR----DHEFINTVEEG-------SEETHEQV 508 (747)
Q Consensus 447 l~~~f~~~l~~il~~~-----~~~~q~il~SATl~~~--v~~l~~~~~~~----~~~~i~~~~~~-------~~~~~~~i 508 (747)
.+.+....++.++..+ ....|+|+||||+++. +..+....... |.++...+..+ .......+
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~i 433 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREI 433 (1008)
T ss_pred eccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHh
Confidence 9988777777665532 3346799999999753 22222221110 11110000000 00000000
Q ss_pred eEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc----------------------------
Q 004518 509 RQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL---------------------------- 560 (747)
Q Consensus 509 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~---------------------------- 560 (747)
...+.....+..-+.+..++.+... .+..+||||+++..|+.++..+...
T Consensus 434 a~l~~~~~g~~dpD~~v~L~tet~~--e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~ 511 (1008)
T KOG0950|consen 434 ANLYSSNLGDEDPDHLVGLCTETAP--EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPG 511 (1008)
T ss_pred hhhhhhhcccCCCcceeeehhhhhh--cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCc
Confidence 0000000000000112222222211 1336999999999999888655331
Q ss_pred ----------cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEE---eCCC-CChhhHHHhhc
Q 004518 561 ----------KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQ---VGLP-SDREQYIHRLG 626 (747)
Q Consensus 561 ----------~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~---~d~p-~s~~~y~Qr~G 626 (747)
...+.++|++++..+|..+...|++|...|++||+.++.|++.|..+++|- ++.+ .+.-.|.|++|
T Consensus 512 ~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~G 591 (1008)
T KOG0950|consen 512 ILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVG 591 (1008)
T ss_pred ccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhh
Confidence 235788999999999999999999999999999999999999999998884 3333 46789999999
Q ss_pred cCCCCC--CcceEEEEeCcchHHH
Q 004518 627 RTGRKG--KEGQGILLLAPWEEFF 648 (747)
Q Consensus 627 RagR~G--~~G~~~~l~s~~e~~~ 648 (747)
||||+| ..|.+++++.+.|...
T Consensus 592 RAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 592 RAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred hhhhcccccCcceEEEeeccchhH
Confidence 999998 4688999999888543
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.7e-21 Score=220.09 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=110.5
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS 597 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~ 597 (747)
..|+..+...+..... .+.++||||+|+..++.++++|...++.+..||+ .+.+|...+..|..+...|+||||+|
T Consensus 581 ~eK~~Ali~~I~~~~~--~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 581 REKYNAIVLKVEELQK--KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred HHHHHHHHHHHHHHhh--CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3466666666655433 3459999999999999999999999999999997 68899999999999999999999999
Q ss_pred ccccCCC---CccE-----EEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHH
Q 004518 598 ARGVDYP---DVTL-----VIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEF 647 (747)
Q Consensus 598 ~~GiDip---~V~~-----VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~ 647 (747)
+||+||+ +|.. ||++..|.+...|.|+.|||||.|.+|.++.|++..|.-
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999999 6654 499999999999999999999999999999999987743
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=9.7e-21 Score=223.75 Aligned_cols=329 Identities=22% Similarity=0.239 Sum_probs=209.9
Q ss_pred CcHHHHHHHHHHHCC---C-cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 302 MTIVQEATLPVLLKG---K-DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 302 ~t~iQ~~~i~~il~~---~-dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
.++.|..++..+... . .+++.||||+|||++.+.+++..+... .....+++++.|++.++.++++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------IKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------ccccceEEEEccHHHHHHHHHHHHHh
Confidence 478899999887754 4 789999999999999988887766442 01245699999999999999999998
Q ss_pred HhhhCCCceEEEEeCCcchHHHHHH-------------HhcCCCcEEEECchhHHHHHHccccccc-cCCCccEEEEeCC
Q 004518 378 LLKYHPSIGVQVVIGGTRLALEQKR-------------MQANPCQILVATPGRLRDHIENTAGFAT-RLMGVKVLVLDEA 443 (747)
Q Consensus 378 l~~~~~~~~~~~~~gg~~~~~~~~~-------------l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~-~L~~i~~vIiDEA 443 (747)
...... +......+.......... ....-..++++||-.+.........+.. .+-..+.+|+||+
T Consensus 269 ~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 269 IFGLFS-VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhcccc-cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 765431 111101222111110000 0001134555565555443222222211 1123578999999
Q ss_pred ccccCCCcHHHHHHHHHHC-CCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchH
Q 004518 444 DHLLDMGFRKDIEKIIAAV-PKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFP 522 (747)
Q Consensus 444 h~ll~~~f~~~l~~il~~~-~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 522 (747)
|.+.+......+..++..+ .....+|+||||+|+.+.+.+...+.....+..............+.+.......+....
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 427 (733)
T COG1203 348 HLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQE 427 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhH
Confidence 9888653333344443333 235679999999999999888877764433332211000000001111111111111001
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHh----cCCccEEEeeCCcc
Q 004518 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR----KSKGLILVTSDVSA 598 (747)
Q Consensus 523 ~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~----~g~~~VLvaT~v~~ 598 (747)
.+...+... -..+++++|.|||+..|..++..|+..+..++.+||.+...+|.+...... .+...|+|||.+.+
T Consensus 428 ~~~~~~~~~--~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIE 505 (733)
T COG1203 428 ELIELISEE--VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIE 505 (733)
T ss_pred hhhhcchhh--hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEE
Confidence 112222221 234579999999999999999999998778999999999999998887654 46778999999999
Q ss_pred cccCCCCccEEEEeCCCCChhhHHHhhccCCCCC--CcceEEEEeCc
Q 004518 599 RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG--KEGQGILLLAP 643 (747)
Q Consensus 599 ~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G--~~G~~~~l~s~ 643 (747)
.|+|+ +++++|-== ..+++.+||+||++|.| ..|..+++...
T Consensus 506 agvDi-dfd~mITe~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 506 AGVDI-DFDVLITEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred EEecc-ccCeeeecC--CCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 99999 688887443 44899999999999999 56777776653
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=3.6e-19 Score=202.59 Aligned_cols=281 Identities=22% Similarity=0.275 Sum_probs=195.1
Q ss_pred CCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 298 GYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 298 g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
|+ .|+..|+.-...++.|+..-+.||||.|||+--++..+-...+ +.+++||+||..|+.|+++.+.+
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-----------gkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-----------GKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHHHHHH
Confidence 44 8999999999999999999999999999998433333322211 24599999999999999999999
Q ss_pred HhhhCCCceEEEEeCCc-c---hHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCC----
Q 004518 378 LLKYHPSIGVQVVIGGT-R---LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM---- 449 (747)
Q Consensus 378 l~~~~~~~~~~~~~gg~-~---~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~---- 449 (747)
++....+..+.+++.+. . ......++.++++||+|+|..-|......-. . -++++|++|.+|.++-.
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~----~-~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS----K-LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc----c-cCCCEEEEccHHHHHhccccH
Confidence 98665445555544443 2 2233456777889999999888866654321 1 26899999999986532
Q ss_pred -------CcHHH-------HHHHHHH------------------------CCCCCeEEEEeccCChHH--HHHHHHHhcC
Q 004518 450 -------GFRKD-------IEKIIAA------------------------VPKQRQTLLFSATVPEEV--RQICHIALKR 489 (747)
Q Consensus 450 -------~f~~~-------l~~il~~------------------------~~~~~q~il~SATl~~~v--~~l~~~~~~~ 489 (747)
||-.. +..+... -.+.-++|+.|||..+.- ..+.+..+.=
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 22211 1111111 113458999999985432 1233333321
Q ss_pred CceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecc---hhHHHHHHHHHHhcccccee
Q 004518 490 DHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTT---AMVTRMVADLLGELKLNVRE 566 (747)
Q Consensus 490 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s---~~~~~~l~~~L~~~~~~v~~ 566 (747)
.+ ........++...++.. .-...+..+++.. +.+.|||++. ...++.++++|+..|+++..
T Consensus 303 ev-------G~~~~~LRNIvD~y~~~---~~~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 303 EV-------GSGGEGLRNIVDIYVES---ESLEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred cc-------CccchhhhheeeeeccC---ccHHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 11 11112223444444433 3334445555544 3488999999 99999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCccEEEee----CCcccccCCC-CccEEEEeCCC
Q 004518 567 IHSRKPQSYRTRVSDEFRKSKGLILVTS----DVSARGVDYP-DVTLVIQVGLP 615 (747)
Q Consensus 567 lh~~l~~~eR~~v~~~F~~g~~~VLvaT----~v~~~GiDip-~V~~VI~~d~p 615 (747)
+|+. ..+.++.|..|++++||.+ .++-||||+| .++++|+||.|
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9994 3788999999999999976 5778999999 58999999998
No 115
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.85 E-value=1.8e-19 Score=198.93 Aligned_cols=322 Identities=16% Similarity=0.215 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHHH----CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLL----KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il----~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
..++++|.+.+.++. ++-++|+..++|-|||++ .+..+-++..... .+|| -||+||...|.+ |.+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~------~~GP-fLVi~P~StL~N-W~~-- 234 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG------IPGP-FLVIAPKSTLDN-WMN-- 234 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC------CCCC-eEEEeeHhhHHH-HHH--
Confidence 368999999988765 467899999999999996 4445555433221 2233 789999877764 344
Q ss_pred HHHhhhCCCceEEEEeCCcchHHHHH--HHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHH
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALEQK--RMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRK 453 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~ 453 (747)
++.++.|++.+.+++|......... .+..+..+|+|+|+++.+..-. + +.--+++++||||||++.+.. .
T Consensus 235 -Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~----~-lk~~~W~ylvIDEaHRiKN~~--s 306 (971)
T KOG0385|consen 235 -EFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS----F-LKKFNWRYLVIDEAHRIKNEK--S 306 (971)
T ss_pred -HHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH----H-HhcCCceEEEechhhhhcchh--h
Confidence 4455678999999998875444332 2334578999999998875421 1 122368999999999988754 3
Q ss_pred HHHHHHHHCCCCCeEEEEeccC-ChHHHHH---HHHHh------------------------------------------
Q 004518 454 DIEKIIAAVPKQRQTLLFSATV-PEEVRQI---CHIAL------------------------------------------ 487 (747)
Q Consensus 454 ~l~~il~~~~~~~q~il~SATl-~~~v~~l---~~~~~------------------------------------------ 487 (747)
.+..++..+.... -+++|.|. -+.+.++ ....+
T Consensus 307 ~L~~~lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K 385 (971)
T KOG0385|consen 307 KLSKILREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIK 385 (971)
T ss_pred HHHHHHHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHH
Confidence 3445555554433 34566663 1111110 00000
Q ss_pred -----cCCce--eeeec---------------------cCCcc-c------c----ccceeEEEE---------------
Q 004518 488 -----KRDHE--FINTV---------------------EEGSE-E------T----HEQVRQMHL--------------- 513 (747)
Q Consensus 488 -----~~~~~--~i~~~---------------------~~~~~-~------~----~~~i~~~~~--------------- 513 (747)
..++. ++..+ ..... . . .....+-|+
T Consensus 386 ~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdeh 465 (971)
T KOG0385|consen 386 SDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEH 465 (971)
T ss_pred HhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchH
Confidence 00000 00000 00000 0 0 000000111
Q ss_pred ecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCC---ccE
Q 004518 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK---GLI 590 (747)
Q Consensus 514 ~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~---~~V 590 (747)
.+....|+.+|..+|...... +.++|||..-....+.+..++.-.++.++.|.|.++.++|...++.|.... .-.
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~--GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiF 543 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQ--GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIF 543 (971)
T ss_pred HHhcCcceehHHHHHHHHHhC--CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEE
Confidence 112234666777777766443 569999999999999999999989999999999999999999999998643 457
Q ss_pred EEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcce--EEEEeCc
Q 004518 591 LVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ--GILLLAP 643 (747)
Q Consensus 591 LvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~--~~~l~s~ 643 (747)
|++|.+.+-|||+-..++||.||..|||+.-+|..-||.|.|+... ++.|++.
T Consensus 544 lLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 544 LLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITE 598 (971)
T ss_pred EEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEecc
Confidence 8899999999999999999999999999999999999999997655 5556664
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.85 E-value=6.6e-19 Score=212.34 Aligned_cols=338 Identities=23% Similarity=0.277 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEE
Q 004518 286 ISALSLKGIKDAGYEKMTIVQEATLP----VLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVI 361 (747)
Q Consensus 286 l~~~l~~~l~~~g~~~~t~iQ~~~i~----~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl 361 (747)
+++.+.+.+...||+ +++.|.+.+. .+.+++++++.|+||+|||++|++|++..+. . +.+++|.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~----------~~~vvi~ 298 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T----------EKPVVIS 298 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C----------CCeEEEE
Confidence 345667777778886 7899998665 5667899999999999999999999988764 1 1249999
Q ss_pred cCcHHHHHHHHH-HHHHHhhhCC-CceEEEEeCCcchH---------------HH-------------------------
Q 004518 362 CPTRELATQAAT-EASTLLKYHP-SIGVQVVIGGTRLA---------------LE------------------------- 399 (747)
Q Consensus 362 ~Ptr~La~Q~~~-~~~~l~~~~~-~~~~~~~~gg~~~~---------------~~------------------------- 399 (747)
+||++|+.|+.. .+..+.+..+ .+++.++.|+.+.- .+
T Consensus 299 t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~ 378 (850)
T TIGR01407 299 TNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNL 378 (850)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccC
Confidence 999999999866 4555543321 35555555543220 00
Q ss_pred ------------------------------HHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCC
Q 004518 400 ------------------------------QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM 449 (747)
Q Consensus 400 ------------------------------~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~ 449 (747)
..+.....++|||+...-|+..+.... ..+....++||||||++.+.
T Consensus 379 ~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~---~ilp~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 379 KGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP---ELFPSFRDLIIDEAHHLPDI 455 (850)
T ss_pred CCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc---ccCCCCCEEEEECcchHHHH
Confidence 000001126899999998887775432 12456789999999996531
Q ss_pred C------------cHHHHH-------------------------------------------------------------
Q 004518 450 G------------FRKDIE------------------------------------------------------------- 456 (747)
Q Consensus 450 ~------------f~~~l~------------------------------------------------------------- 456 (747)
. +...+.
T Consensus 456 a~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 535 (850)
T TIGR01407 456 AENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVD 535 (850)
T ss_pred HHHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 0 000000
Q ss_pred H---HHHH---------------------C---------------------------CCCCeEEEEeccCChH-HHHHHH
Q 004518 457 K---IIAA---------------------V---------------------------PKQRQTLLFSATVPEE-VRQICH 484 (747)
Q Consensus 457 ~---il~~---------------------~---------------------------~~~~q~il~SATl~~~-v~~l~~ 484 (747)
. .+.. . +....+|++|||+... -.....
T Consensus 536 ~l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~ 615 (850)
T TIGR01407 536 QLRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFP 615 (850)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHH
Confidence 0 0000 0 0114678999999732 122222
Q ss_pred HHhcCC-ceeeeeccCCccccccceeEEEEecCc--------ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHH
Q 004518 485 IALKRD-HEFINTVEEGSEETHEQVRQMHLVAPL--------DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVAD 555 (747)
Q Consensus 485 ~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~--------~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~ 555 (747)
..+.-+ ..+.... ..+.....-...++.... +.-...+...|...+.. .++++||||+|+...+.++.
T Consensus 616 ~~lGl~~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~ 692 (850)
T TIGR01407 616 QLLGLTDVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYD 692 (850)
T ss_pred HhcCCCccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHH
Confidence 222211 1111111 111111111222222111 11122344455444433 34699999999999999999
Q ss_pred HHHhcc--ccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCcc--EEEEeCCCCC-h------------
Q 004518 556 LLGELK--LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVT--LVIQVGLPSD-R------------ 618 (747)
Q Consensus 556 ~L~~~~--~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~--~VI~~d~p~s-~------------ 618 (747)
.|.... ..+..+..+.. ..|.++++.|+++...||++|+.+++|||+|+.. .||...+|.. +
T Consensus 693 ~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~ 771 (850)
T TIGR01407 693 MLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKL 771 (850)
T ss_pred HHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHH
Confidence 997521 12223333333 4689999999999999999999999999999876 5677787741 1
Q ss_pred -----------------hhHHHhhccCCCCCCcceEEEEeC
Q 004518 619 -----------------EQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 619 -----------------~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
..+.|.+||.-|.....-+++++.
T Consensus 772 ~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 772 EQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred HHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 223799999999875443444444
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=7.8e-19 Score=203.33 Aligned_cols=134 Identities=25% Similarity=0.344 Sum_probs=117.3
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
....+..|..-+...... +.++||||+|+..++.++.+|...++.+..+|+.+++.+|..++..|+.|.+.|||||++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~--g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVAR--NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 444566666666665433 469999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeC-----CCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHhh
Q 004518 597 SARGVDYPDVTLVIQVG-----LPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIK 653 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d-----~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l~ 653 (747)
+++|+|+|++++||++| .|.+..+|+||+|||||. ..|.|++++...+......|.
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 99999999999999988 799999999999999998 589999999876654444443
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=4.6e-18 Score=191.88 Aligned_cols=321 Identities=18% Similarity=0.181 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
-.|+++|--.+-.+++|+ |+.+.||+|||++..+|++...+... .|.|++|+..||.|-++++..++
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~-----------~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR-----------RVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC-----------CeEEEcCCHHHHHHHHHHHHHHH
Confidence 368899999998888875 78999999999999999887776443 38999999999999999999999
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-----HHHHHccccccccCCCccEEEEeCCcccc-CC----
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-----RDHIENTAGFATRLMGVKVLVLDEADHLL-DM---- 449 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-----l~~l~~~~~~~~~L~~i~~vIiDEAh~ll-~~---- 449 (747)
.+. ++++.++.++.+... .+... .|||+++|..-| .+.|...... .....+.++||||+|.++ |.
T Consensus 144 ~~L-GLsvg~i~~~~~~~e-rr~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~-~v~R~~~faIVDEvDSiLIDeArtP 218 (764)
T PRK12326 144 EAL-GLTVGWITEESTPEE-RRAAY--ACDVTYASVNEIGFDVLRDQLVTDVAD-LVSPNPDVAIIDEADSVLVDEALVP 218 (764)
T ss_pred Hhc-CCEEEEECCCCCHHH-HHHHH--cCCCEEcCCcccccccchhhhccChHh-hcCCccceeeecchhhheeccccCc
Confidence 887 899999888766443 33333 389999998754 3333221111 224678899999999854 21
Q ss_pred ----------CcHHHHHHHHHHCCCC------------------------------------------------------
Q 004518 450 ----------GFRKDIEKIIAAVPKQ------------------------------------------------------ 465 (747)
Q Consensus 450 ----------~f~~~l~~il~~~~~~------------------------------------------------------ 465 (747)
.....+..+...+...
T Consensus 219 LiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~ 298 (764)
T PRK12326 219 LVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALL 298 (764)
T ss_pred eeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHH
Confidence 0111111222222110
Q ss_pred ----------------------------------------------------------------CeEEEEeccCChHHHH
Q 004518 466 ----------------------------------------------------------------RQTLLFSATVPEEVRQ 481 (747)
Q Consensus 466 ----------------------------------------------------------------~q~il~SATl~~~v~~ 481 (747)
.++.+||.|...+..+
T Consensus 299 ~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~E 378 (764)
T PRK12326 299 QRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQ 378 (764)
T ss_pred hcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHH
Confidence 1344555555444333
Q ss_pred HHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcc
Q 004518 482 ICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELK 561 (747)
Q Consensus 482 l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~ 561 (747)
+...|-. + ++. ++...+...... ...+......|+..+..-+..... .+.++||.+.|....+.++..|.+.+
T Consensus 379 f~~iY~l-~--Vv~-IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~g 451 (764)
T PRK12326 379 LRQFYDL-G--VSV-IPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAAG 451 (764)
T ss_pred HHHHhCC-c--EEE-CCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 3333321 1 111 111111000000 011223334455555555544433 34599999999999999999999999
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcCC-ccEEEeeCCcccccCCC---------------CccEEEEeCCCCChhhHHHhh
Q 004518 562 LNVREIHSRKPQSYRTRVSDEFRKSK-GLILVTSDVSARGVDYP---------------DVTLVIQVGLPSDREQYIHRL 625 (747)
Q Consensus 562 ~~v~~lh~~l~~~eR~~v~~~F~~g~-~~VLvaT~v~~~GiDip---------------~V~~VI~~d~p~s~~~y~Qr~ 625 (747)
++..+|++.-...+-..|-+ .|. -.|.|||++|+||.||. |==|||-...+.|..--.|-.
T Consensus 452 I~h~vLNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 452 VPAVVLNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CcceeeccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 99999998755544333333 343 35999999999999995 223899999999999999999
Q ss_pred ccCCCCCCcceEEEEeCcchHHH
Q 004518 626 GRTGRKGKEGQGILLLAPWEEFF 648 (747)
Q Consensus 626 GRagR~G~~G~~~~l~s~~e~~~ 648 (747)
|||||.|.+|.+..|+|-.|.-+
T Consensus 529 GRaGRQGDpGss~f~lSleDdl~ 551 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLEDDVV 551 (764)
T ss_pred cccccCCCCCceeEEEEcchhHH
Confidence 99999999999999998766543
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=9e-18 Score=195.95 Aligned_cols=124 Identities=27% Similarity=0.333 Sum_probs=111.2
Q ss_pred cccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
....+..+...|..... .+.++||||++...++.++..|...++.+..+||.+++.+|..++..|+.|...|||||++
T Consensus 428 ~~~q~~~L~~~L~~~~~--~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVA--KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 34456666666666543 3569999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCC-----CCChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 597 SARGVDYPDVTLVIQVGL-----PSDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~-----p~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
+++|+|+|++++||+++. |.+..+|+||+|||||. ..|.|++|+..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 999999999999998875 78999999999999996 68999999985
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=7.7e-18 Score=187.12 Aligned_cols=330 Identities=17% Similarity=0.203 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHH----CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLL----KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 301 ~~t~iQ~~~i~~il----~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
.+.++|++++.++. ++...|+...+|-|||.+. +..|..++.++.. . ..+|||||. .+..||..++.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~------~-~paLIVCP~-Tii~qW~~E~~ 275 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKL------T-KPALIVCPA-TIIHQWMKEFQ 275 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccc------c-CceEEEccH-HHHHHHHHHHH
Confidence 35789999998875 3567899999999999863 3334444444211 1 239999996 45557666665
Q ss_pred HHhhhCCCceEEEEeCCcchH------------HHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc
Q 004518 377 TLLKYHPSIGVQVVIGGTRLA------------LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~------------~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh 444 (747)
.+ .|.+.+.++++..+.. ....+.......|+|+|+..+.-. ... ..-..++++|+||.|
T Consensus 276 ~w---~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~d~----l~~~~W~y~ILDEGH 347 (923)
T KOG0387|consen 276 TW---WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-GDD----LLGILWDYVILDEGH 347 (923)
T ss_pred Hh---CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-Ccc----cccccccEEEecCcc
Confidence 55 5678888887765421 001111112347999998877422 111 222468999999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCeEEEEeccC-ChHHHHHHHHHhcCCc--------------eeeee-------------
Q 004518 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFSATV-PEEVRQICHIALKRDH--------------EFINT------------- 496 (747)
Q Consensus 445 ~ll~~~f~~~l~~il~~~~~~~q~il~SATl-~~~v~~l~~~~~~~~~--------------~~i~~------------- 496 (747)
++-+..- .+......++ ..+-|++|.|+ -+.+.++...+--..| ..|+.
T Consensus 348 ~IrNpns--~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ 424 (923)
T KOG0387|consen 348 RIRNPNS--KISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQT 424 (923)
T ss_pred cccCCcc--HHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHH
Confidence 9987542 2222233333 34467788885 2333332111000000 00000
Q ss_pred ----------------------------cc--------------------------------CCcccccc------ceeE
Q 004518 497 ----------------------------VE--------------------------------EGSEETHE------QVRQ 510 (747)
Q Consensus 497 ----------------------------~~--------------------------------~~~~~~~~------~i~~ 510 (747)
.. ........ .+-.
T Consensus 425 aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICn 504 (923)
T KOG0387|consen 425 AYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICN 504 (923)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcC
Confidence 00 00000000 0000
Q ss_pred E---------EEecCc--------ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHH-hccccceeccCCCC
Q 004518 511 M---------HLVAPL--------DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLG-ELKLNVREIHSRKP 572 (747)
Q Consensus 511 ~---------~~~~~~--------~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~-~~~~~v~~lh~~l~ 572 (747)
. .....+ .-|+..+..++..+... +.++|+|..++.....+...|. ..+++++.+.|..+
T Consensus 505 HPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq--g~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~ 582 (923)
T KOG0387|consen 505 HPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ--GDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP 582 (923)
T ss_pred CcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhC--CCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 0 000001 12456677777766554 4499999999999999999999 57999999999999
Q ss_pred HHHHHHHHHHHhcCCc--cEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcce--EEEEeCc---ch
Q 004518 573 QSYRTRVSDEFRKSKG--LILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ--GILLLAP---WE 645 (747)
Q Consensus 573 ~~eR~~v~~~F~~g~~--~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~--~~~l~s~---~e 645 (747)
...|..++++|.++.. -+|++|.|.+-|+|+-+.+.||.||+-|||+.-.|..-||.|.|+.-. +|.|++. .|
T Consensus 583 ~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 583 AALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred cchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 9999999999998764 468899999999999999999999999999999999999999997654 4556654 34
Q ss_pred HHHHHHh
Q 004518 646 EFFLSTI 652 (747)
Q Consensus 646 ~~~l~~l 652 (747)
.-|..++
T Consensus 663 kiY~rQI 669 (923)
T KOG0387|consen 663 KIYHRQI 669 (923)
T ss_pred HHHHHHH
Confidence 4444443
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2e-17 Score=191.15 Aligned_cols=320 Identities=19% Similarity=0.206 Sum_probs=208.2
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
-.++++|-..--.++.| -|+.+.||+|||+++.+|++...+... .|.|++|+..||.+-++++..++
T Consensus 81 m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~-----------~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGK-----------GVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCC-----------CEEEEeCCHHHHHHHHHHHHHHh
Confidence 36778887766666555 589999999999999999987766443 38999999999999999999999
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccccc---cccCCCccEEEEeCCcccc-CC-----
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGF---ATRLMGVKVLVLDEADHLL-DM----- 449 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~---~~~L~~i~~vIiDEAh~ll-~~----- 449 (747)
.+. ++++.++.++..... .+.... ++|+++|..-| .++|.....+ ......+.++||||+|.++ |.
T Consensus 148 ~~l-Gl~v~~i~~~~~~~e-rr~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPL 223 (913)
T PRK13103 148 EFL-GLSVGIVTPFQPPEE-KRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred ccc-CCEEEEECCCCCHHH-HHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCce
Confidence 887 899999887765443 233322 89999999876 3344322110 1124688999999999865 21
Q ss_pred ---C-------cHHHHHHHHHHCC--------------------CC----------------------------------
Q 004518 450 ---G-------FRKDIEKIIAAVP--------------------KQ---------------------------------- 465 (747)
Q Consensus 450 ---~-------f~~~l~~il~~~~--------------------~~---------------------------------- 465 (747)
+ ....+..+...+. +.
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhh
Confidence 0 1111111111110 00
Q ss_pred --------------------------------------------------------------------------------
Q 004518 466 -------------------------------------------------------------------------------- 465 (747)
Q Consensus 466 -------------------------------------------------------------------------------- 465 (747)
T Consensus 304 ~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHh
Confidence
Q ss_pred -CeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEe
Q 004518 466 -RQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFC 544 (747)
Q Consensus 466 -~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~ 544 (747)
.++.+||.|...+-.++...|-. +...| +...+...... .-.+......|+..+..-+...... +.++||-+
T Consensus 384 Y~kLsGMTGTa~te~~Ef~~iY~l-~Vv~I---PTnkP~~R~D~-~d~vy~t~~eK~~Ai~~ei~~~~~~--GrPVLVGT 456 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGL-DVVVI---PPNKPLARKDF-NDLVYLTAEEKYAAIITDIKECMAL--GRPVLVGT 456 (913)
T ss_pred cchhccCCCCCHHHHHHHHHHhCC-CEEEC---CCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHhC--CCCEEEEe
Confidence 12233333333222222222211 11100 00000000000 0112333344555555555544433 45999999
Q ss_pred cchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCC-ccEEEeeCCcccccCCC-------------------
Q 004518 545 TTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK-GLILVTSDVSARGVDYP------------------- 604 (747)
Q Consensus 545 ~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~-~~VLvaT~v~~~GiDip------------------- 604 (747)
.|+...+.++++|.+.++..-+|+......+..-+- ..|. -.|.|||++|+||-||.
T Consensus 457 ~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 457 ATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHH
Confidence 999999999999999999998888875544444333 3453 45999999999999994
Q ss_pred ------------------CccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchH
Q 004518 605 ------------------DVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646 (747)
Q Consensus 605 ------------------~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~ 646 (747)
|==+||-...+.|..--.|-.|||||.|.+|.+..|+|-.|.
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 223788888999999999999999999999999999987653
No 122
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=195.16 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=112.1
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.|..||.+.+..+-.+..++|+|||.+|||.+ ..-+++.+++... ...+|+++||++|++|+...+.....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD--------~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD--------SDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC--------CCEEEEecchHHHhhhhhHHHHHhhc
Confidence 47889999999999999999999999999986 3445566654322 12499999999999999887765543
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHH
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~ 460 (747)
...-.....+.|..+...... .-+|+|+|+-|+.|-..|-...........++++|+||+|.+.++.-...++.++.
T Consensus 582 ~~t~~rg~sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cCccccchhhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 221112222222222111111 12599999999999877765211123357899999999999987665555666666
Q ss_pred HCCCCCeEEEEeccCC
Q 004518 461 AVPKQRQTLLFSATVP 476 (747)
Q Consensus 461 ~~~~~~q~il~SATl~ 476 (747)
.+ .+.++++|||+.
T Consensus 659 li--~CP~L~LSATig 672 (1330)
T KOG0949|consen 659 LI--PCPFLVLSATIG 672 (1330)
T ss_pred hc--CCCeeEEecccC
Confidence 55 356999999984
No 123
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.8e-16 Score=181.31 Aligned_cols=319 Identities=16% Similarity=0.214 Sum_probs=208.1
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.|+++|.-..-.++.|+ |..+.||-|||++..+|+.-..+..+ .|-|++..--||..=++++..+..
T Consensus 78 r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk-----------gVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 78 RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK-----------GVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC-----------ceEEEecchhhhhhhHHHHHHHHH
Confidence 68889988776676664 89999999999999999876555433 278888889999999999999998
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-HHHHHccccc---cccCCCccEEEEeCCcccc-CCC-----
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-RDHIENTAGF---ATRLMGVKVLVLDEADHLL-DMG----- 450 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-l~~l~~~~~~---~~~L~~i~~vIiDEAh~ll-~~~----- 450 (747)
+. ++++++...+........ .. .|||+++|..-| .++|.....+ ......+.+.||||+|.++ |..
T Consensus 145 fL-GLsvG~i~~~~~~~~rr~-aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 145 FL-GLSVGINKANMDPNLKRE-AY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred Hh-CCceeeeCCCCChHHHHH-hc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 87 899999887765443222 22 389999998765 3344322100 1224678899999999854 210
Q ss_pred ----------cHHHHHHHHHHCCC-------C------------------------------------------------
Q 004518 451 ----------FRKDIEKIIAAVPK-------Q------------------------------------------------ 465 (747)
Q Consensus 451 ----------f~~~l~~il~~~~~-------~------------------------------------------------ 465 (747)
+...+..+...+.. .
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 11112222222211 0
Q ss_pred -------------------------------------------------------------CeEEEEeccCChHHHHHHH
Q 004518 466 -------------------------------------------------------------RQTLLFSATVPEEVRQICH 484 (747)
Q Consensus 466 -------------------------------------------------------------~q~il~SATl~~~v~~l~~ 484 (747)
.++.+||.|...+-.++..
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 1233444444333333332
Q ss_pred HHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccc
Q 004518 485 IALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNV 564 (747)
Q Consensus 485 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v 564 (747)
.|-. . ++. ++...+...... .-.+......|+..+..-+..... .+.++||.|.|....+.++++|.+.++..
T Consensus 381 iY~l-~--Vv~-IPTnkP~~R~D~-~d~iy~t~~~K~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 381 IYNM-R--VNV-VPTNKPVIRKDE-PDSIFGTKHAKWKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred HhCC-C--EEE-CCCCCCeeeeeC-CCcEEEcHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 2211 1 111 010000000000 001233344555555555554433 35599999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHHhcCC-ccEEEeeCCcccccCCCC---cc-----EEEEeCCCCChhhHHHhhccCCCCCCcc
Q 004518 565 REIHSRKPQSYRTRVSDEFRKSK-GLILVTSDVSARGVDYPD---VT-----LVIQVGLPSDREQYIHRLGRTGRKGKEG 635 (747)
Q Consensus 565 ~~lh~~l~~~eR~~v~~~F~~g~-~~VLvaT~v~~~GiDip~---V~-----~VI~~d~p~s~~~y~Qr~GRagR~G~~G 635 (747)
.+|++.-...+-.-|- ..|. ..|.|||++|+||.||.- |. |||....|.|..--.|..|||||.|.+|
T Consensus 454 ~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 9999874443333322 4453 469999999999999952 22 8999999999999999999999999999
Q ss_pred eEEEEeCcchH
Q 004518 636 QGILLLAPWEE 646 (747)
Q Consensus 636 ~~~~l~s~~e~ 646 (747)
.+..|+|-.|.
T Consensus 531 ss~f~lSLeD~ 541 (925)
T PRK12903 531 ESRFFISLDDQ 541 (925)
T ss_pred cceEEEecchH
Confidence 99999987664
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=3.9e-17 Score=191.31 Aligned_cols=307 Identities=15% Similarity=0.161 Sum_probs=175.2
Q ss_pred CcHHHHHHHHHHH----C------CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 004518 302 MTIVQEATLPVLL----K------GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQA 371 (747)
Q Consensus 302 ~t~iQ~~~i~~il----~------~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 371 (747)
++++|..++..+. + .+..+++++||||||++.+..+ ..+++.. ...++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~~--------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALELL--------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhhc--------CCCeEEEEECcHHHHHHH
Confidence 6788988886553 2 2579999999999999754443 3443221 235699999999999999
Q ss_pred HHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcc-ccccccCCCc-cEEEEeCCccccCC
Q 004518 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENT-AGFATRLMGV-KVLVLDEADHLLDM 449 (747)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~-~~~~~~L~~i-~~vIiDEAh~ll~~ 449 (747)
.+.+..+.... . ....+...-...+......|+|+|...|...+... ..+ ....- -+||+||||+....
T Consensus 310 ~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~--~~~~~~~lvIvDEaHrs~~~ 380 (667)
T TIGR00348 310 MKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKF--PVDRKEVVVIFDEAHRSQYG 380 (667)
T ss_pred HHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhcc--CCCCCCEEEEEEcCccccch
Confidence 99988774211 0 11111111122233344689999999997644321 111 11111 28999999986533
Q ss_pred CcHHHHHHHHHHCCCCCeEEEEeccCChHHHH-HHHHHhcCCceeee--eccCCc-cccccceeEEEEec----------
Q 004518 450 GFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQ-ICHIALKRDHEFIN--TVEEGS-EETHEQVRQMHLVA---------- 515 (747)
Q Consensus 450 ~f~~~l~~il~~~~~~~q~il~SATl~~~v~~-l~~~~~~~~~~~i~--~~~~~~-~~~~~~i~~~~~~~---------- 515 (747)
.+...+ ...+| +...++||||+-..... ....+......++. ...... ......+.......
T Consensus 381 ~~~~~l---~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~ 456 (667)
T TIGR00348 381 ELAKNL---KKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLD 456 (667)
T ss_pred HHHHHH---HhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHH
Confidence 333222 23443 46799999997432111 00111000000110 000000 00000000000000
Q ss_pred ---------------------------------CcccchHHHHHHHHHHhh---cCCCCeEEEEecchhHHHHHHHHHHh
Q 004518 516 ---------------------------------PLDLHFPLLYVLLREHVA---DNPEYKVLVFCTTAMVTRMVADLLGE 559 (747)
Q Consensus 516 ---------------------------------~~~~k~~~l~~~l~~~~~---~~~~~k~LVF~~s~~~~~~l~~~L~~ 559 (747)
..+.+...+...+..++. ....++++|||.++..|..+++.|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 457 AFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHh
Confidence 000011111222222221 12247999999999999999998866
Q ss_pred c-----cccceeccCCCCHH---------------------HHHHHHHHHhc-CCccEEEeeCCcccccCCCCccEEEEe
Q 004518 560 L-----KLNVREIHSRKPQS---------------------YRTRVSDEFRK-SKGLILVTSDVSARGVDYPDVTLVIQV 612 (747)
Q Consensus 560 ~-----~~~v~~lh~~l~~~---------------------eR~~v~~~F~~-g~~~VLvaT~v~~~GiDip~V~~VI~~ 612 (747)
. +....++++..... ....+.++|++ +..+|||+++.+.+|+|.|.+.+++..
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld 616 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD 616 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe
Confidence 4 23445555543322 12468889976 678999999999999999999988855
Q ss_pred CCCCChhhHHHhhccCCCC
Q 004518 613 GLPSDREQYIHRLGRTGRK 631 (747)
Q Consensus 613 d~p~s~~~y~Qr~GRagR~ 631 (747)
- |..-..++|.+||+.|.
T Consensus 617 K-plk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 617 K-PLKYHGLLQAIARTNRI 634 (667)
T ss_pred c-cccccHHHHHHHHhccc
Confidence 5 44445789999999994
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.78 E-value=3.1e-18 Score=197.64 Aligned_cols=332 Identities=17% Similarity=0.198 Sum_probs=211.7
Q ss_pred CCCcHHHHHHHHHHH----CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLL----KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il----~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
..++.+|-+.+.+++ +++++|+..++|-|||+. .+..|..++..... .|| .|||+|.-.+. .|.+.+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~------~gp-flvvvplst~~-~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQI------HGP-FLVVVPLSTIT-AWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhc------cCC-eEEEeehhhhH-HHHHHH
Confidence 578999999998876 468999999999999986 44445555544321 122 78999986655 455666
Q ss_pred HHHhhhCCCceEEEEeCCcchHHHHHH---HhcC-----CCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcccc
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALEQKR---MQAN-----PCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL 447 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~~~~---l~~~-----~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll 447 (747)
..+. .+++.+++|......-++. .... .++++++|++.++.--. + +.--.+.+++|||||+|.
T Consensus 440 ~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~----~-L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 440 ETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA----E-LSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh----h-hccCCcceeeecHHhhcC
Confidence 6654 4567677766543332221 1122 37999999998863322 1 111257789999999988
Q ss_pred CCCcHHHHHHHHHHCCCCCeEEEEeccC-ChHHHHHHHHH-hcCCceeee------------------------------
Q 004518 448 DMGFRKDIEKIIAAVPKQRQTLLFSATV-PEEVRQICHIA-LKRDHEFIN------------------------------ 495 (747)
Q Consensus 448 ~~~f~~~l~~il~~~~~~~q~il~SATl-~~~v~~l~~~~-~~~~~~~i~------------------------------ 495 (747)
+.. ..+-..+..+.... -+++|.|. -+.+.++.... +..|..+-.
T Consensus 511 N~~--~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr 587 (1373)
T KOG0384|consen 511 NDE--SKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRR 587 (1373)
T ss_pred chH--HHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHH
Confidence 532 11222233333222 34555553 33333332111 000000000
Q ss_pred ---eccCCcccccc----------------------------------------------ceeEEEEecCcc--------
Q 004518 496 ---TVEEGSEETHE----------------------------------------------QVRQMHLVAPLD-------- 518 (747)
Q Consensus 496 ---~~~~~~~~~~~----------------------------------------------~i~~~~~~~~~~-------- 518 (747)
.+....+.... -..|-|++...+
T Consensus 588 ~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~ 667 (1373)
T KOG0384|consen 588 LKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFR 667 (1373)
T ss_pred HHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhh
Confidence 00000000000 000111111111
Q ss_pred ---------------cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHH
Q 004518 519 ---------------LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEF 583 (747)
Q Consensus 519 ---------------~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F 583 (747)
-|+.+|..+|... +..+.+||||...+.....|+.||...++++-.|.|.+....|..++.+|
T Consensus 668 ~~~~d~~L~~lI~sSGKlVLLDKLL~rL--k~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 668 DKMRDEALQALIQSSGKLVLLDKLLPRL--KEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred hcchHHHHHHHHHhcCcEEeHHHHHHHH--hcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhc
Confidence 1122223333332 23456999999999999999999999999999999999999999999999
Q ss_pred hc---CCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcce--EEEEeCc--chHHHHHHhhh
Q 004518 584 RK---SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQ--GILLLAP--WEEFFLSTIKD 654 (747)
Q Consensus 584 ~~---g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~--~~~l~s~--~e~~~l~~l~~ 654 (747)
.. ....+|+||.+.+-|||+-..+.||+||.-|||+.-+|...||.|.|+..+ +|.|++. .|+..+++-+.
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~ 823 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKL 823 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHH
Confidence 85 356789999999999999999999999999999999999999999998665 6778875 56667766543
No 126
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=8.6e-17 Score=184.79 Aligned_cols=313 Identities=20% Similarity=0.266 Sum_probs=203.1
Q ss_pred CCCcHHHHHHHHHHHCC----CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLKG----KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~----~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
..+.+-|+.++..|... ...++.|.||||||.+|+-.+-+.+.+.+ .+||++|-..|-.|+.+.+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-----------qvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-----------QVLVLVPEIALTPQLLARF 265 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-----------EEEEEeccccchHHHHHHH
Confidence 35678899999888665 67999999999999998776666554332 3999999999999999999
Q ss_pred HHHhhhCCCceEEEEeCCcchH---HHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCC---
Q 004518 376 STLLKYHPSIGVQVVIGGTRLA---LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM--- 449 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~--- 449 (747)
+..+. ..+.+++.+.+.. ....+...+...|+|+|=.-| +..+.++.+|||||=|.-.-.
T Consensus 266 ~~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDEEHD~sYKq~~ 331 (730)
T COG1198 266 KARFG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDEEHDSSYKQED 331 (730)
T ss_pred HHHhC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEeccccccccCCc
Confidence 87754 4566666665533 334456668899999994333 356889999999999964421
Q ss_pred C---cHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCccc----chH
Q 004518 450 G---FRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDL----HFP 522 (747)
Q Consensus 450 ~---f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~----k~~ 522 (747)
+ +..++... .....+.++|+-|||..-+ .+.+.... ....+.............+.-..+...... -..
T Consensus 332 ~prYhARdvA~~-Ra~~~~~pvvLgSATPSLE--S~~~~~~g-~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 332 GPRYHARDVAVL-RAKKENAPVVLGSATPSLE--SYANAESG-KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred CCCcCHHHHHHH-HHHHhCCCEEEecCCCCHH--HHHhhhcC-ceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 1 33444333 3333567899999996544 44333211 122222222221111222222222111111 124
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecchhHHH---------------------------------------------------
Q 004518 523 LLYVLLREHVADNPEYKVLVFCTTAMVTR--------------------------------------------------- 551 (747)
Q Consensus 523 ~l~~~l~~~~~~~~~~k~LVF~~s~~~~~--------------------------------------------------- 551 (747)
.+.+.+++.+..+ .++|+|+|.+--+-
T Consensus 408 ~Ll~~i~~~l~~g--eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 408 ALLEAIRKTLERG--EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEH 485 (730)
T ss_pred HHHHHHHHHHhcC--CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCe
Confidence 5666676666543 48888887543221
Q ss_pred ---------HHHHHHHhc--cccceeccCCCCHHH--HHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCC--
Q 004518 552 ---------MVADLLGEL--KLNVREIHSRKPQSY--RTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPS-- 616 (747)
Q Consensus 552 ---------~l~~~L~~~--~~~v~~lh~~l~~~e--R~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~-- 616 (747)
++.+.|.+. +..+..+.++....+ -...+..|.+|+.+|||.|.+++.|+|+|+|+.|...|...
T Consensus 486 L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L 565 (730)
T COG1198 486 LRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL 565 (730)
T ss_pred eEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh
Confidence 111111111 234566666655433 45779999999999999999999999999999987655431
Q ss_pred ----------ChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 617 ----------DREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 617 ----------s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
....+.|-+|||||.+.+|.+++-...
T Consensus 566 ~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~ 602 (730)
T COG1198 566 GSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYN 602 (730)
T ss_pred cCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCC
Confidence 345678999999999999998876543
No 127
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=7.5e-18 Score=189.61 Aligned_cols=304 Identities=20% Similarity=0.150 Sum_probs=193.7
Q ss_pred CCCcHHHHHHHHH----HHCC-CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPV----LLKG-KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374 (747)
Q Consensus 300 ~~~t~iQ~~~i~~----il~~-~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 374 (747)
..++.+|..||.. +.+| +.+++++.||+|||.+ .+.++..|++.+... +||+|+-+++|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~~K--------RVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGWVK--------RVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcchhh--------eeeEEechHHHHHHHHHH
Confidence 3578999988854 4455 4599999999999987 556778888776543 499999999999999988
Q ss_pred HHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcc-cc-ccccCCCccEEEEeCCccccCCCcH
Q 004518 375 ASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENT-AG-FATRLMGVKVLVLDEADHLLDMGFR 452 (747)
Q Consensus 375 ~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~-~~-~~~~L~~i~~vIiDEAh~ll~~~f~ 452 (747)
+..+.- .-.....+.+... .+.+.|.|+|...+...+... .. ..+....+++|||||||+-. .
T Consensus 235 f~~~~P---~~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~ 299 (875)
T COG4096 235 FEDFLP---FGTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----Y 299 (875)
T ss_pred HHHhCC---CccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----H
Confidence 776643 3333333322221 123799999999998777644 11 11223458999999999743 3
Q ss_pred HHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHh------------------cCCceeeeeccC----Cccc-cc----
Q 004518 453 KDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIAL------------------KRDHEFINTVEE----GSEE-TH---- 505 (747)
Q Consensus 453 ~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~------------------~~~~~~i~~~~~----~~~~-~~---- 505 (747)
..+..|+.++..- ++++|||+...+..-.-.++ ..++..+.+.-. +... ..
T Consensus 300 ~~~~~I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~sere 377 (875)
T COG4096 300 SEWSSILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSERE 377 (875)
T ss_pred hhhHHHHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhh
Confidence 3334555544322 34458887654332222222 112222211100 0000 00
Q ss_pred ----cce---eEEEEecC------cccchHHHHHHHHHHhhcC--C--CCeEEEEecchhHHHHHHHHHHhc-----ccc
Q 004518 506 ----EQV---RQMHLVAP------LDLHFPLLYVLLREHVADN--P--EYKVLVFCTTAMVTRMVADLLGEL-----KLN 563 (747)
Q Consensus 506 ----~~i---~~~~~~~~------~~~k~~~l~~~l~~~~~~~--~--~~k~LVF~~s~~~~~~l~~~L~~~-----~~~ 563 (747)
..+ .+.+-..+ .......+...+...+... . .+|+||||.+..++++++..|... +--
T Consensus 378 k~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~ 457 (875)
T COG4096 378 KLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRY 457 (875)
T ss_pred hhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCce
Confidence 000 01111111 1123345666666666652 1 359999999999999999999875 234
Q ss_pred ceeccCCCCHHHHHHHHHHHhcC--CccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCC
Q 004518 564 VREIHSRKPQSYRTRVSDEFRKS--KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631 (747)
Q Consensus 564 v~~lh~~l~~~eR~~v~~~F~~g--~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~ 631 (747)
+..|.+.-.+. ...+..|... --.|.++.+++.+|||+|.|..+|++-...|..-|.|++||.-|.
T Consensus 458 a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 458 AMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 66667765543 3445555542 246888899999999999999999999999999999999999885
No 128
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=1.9e-18 Score=182.50 Aligned_cols=322 Identities=20% Similarity=0.210 Sum_probs=210.7
Q ss_pred CCCcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCC---CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCC
Q 004518 275 FMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG---KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQ 351 (747)
Q Consensus 275 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~---~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~ 351 (747)
......|..-.+.+.|--.|+ .-..++|+|.+++..++.| +..||+.|+|+|||++-.-+ ...+
T Consensus 278 lLeEYDFRND~~npdl~idLK--Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTA-a~ti---------- 344 (776)
T KOG1123|consen 278 LLEEYDFRNDNVNPDLDIDLK--PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTA-ACTI---------- 344 (776)
T ss_pred hhhhhccccCCCCCCCCcCcC--cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeee-eeee----------
Confidence 334444544443333322222 2357899999999999876 67899999999999863332 2222
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHH------cc
Q 004518 352 RRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIE------NT 425 (747)
Q Consensus 352 ~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~------~~ 425 (747)
...+||+|..-..+.||...+..+....+. .+...+... +..+..++.|+|+|+.++..--. +-
T Consensus 345 ---kK~clvLcts~VSVeQWkqQfk~wsti~d~-~i~rFTsd~------Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~ 414 (776)
T KOG1123|consen 345 ---KKSCLVLCTSAVSVEQWKQQFKQWSTIQDD-QICRFTSDA------KERFPSGAGVVVTTYSMVAYTGKRSHEAEKI 414 (776)
T ss_pred ---cccEEEEecCccCHHHHHHHHHhhcccCcc-ceEEeeccc------cccCCCCCcEEEEeeehhhhcccccHHHHHH
Confidence 123999999999999999999988765432 233333222 12234568999999987732110 00
Q ss_pred ccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeee----------
Q 004518 426 AGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFIN---------- 495 (747)
Q Consensus 426 ~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~---------- 495 (747)
..| ..-..|.++|+||+|.+....|+..+.-+-.++ -+++|||+-.+...+....+...|.+..
T Consensus 415 m~~-l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kG 488 (776)
T KOG1123|consen 415 MDF-LRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKG 488 (776)
T ss_pred HHH-HhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCC
Confidence 011 122468899999999999888999888888888 5899999865544433222211111110
Q ss_pred ---ec---cC---Cc-----ccccc-ceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc
Q 004518 496 ---TV---EE---GS-----EETHE-QVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL 560 (747)
Q Consensus 496 ---~~---~~---~~-----~~~~~-~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~ 560 (747)
.+ +. .. ..... .-+...+.+-...||....-+|+.+-.. +.++|||..+.-....++-.|.
T Consensus 489 hIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~R--gDKiIVFsDnvfALk~YAikl~-- 564 (776)
T KOG1123|consen 489 HIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERR--GDKIIVFSDNVFALKEYAIKLG-- 564 (776)
T ss_pred ceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhc--CCeEEEEeccHHHHHHHHHHcC--
Confidence 00 00 00 00000 1111222333445666666666665443 4599999999877666665553
Q ss_pred cccceeccCCCCHHHHHHHHHHHhcC-CccEEEeeCCcccccCCCCccEEEEeCCC-CChhhHHHhhccCCCCC
Q 004518 561 KLNVREIHSRKPQSYRTRVSDEFRKS-KGLILVTSDVSARGVDYPDVTLVIQVGLP-SDREQYIHRLGRTGRKG 632 (747)
Q Consensus 561 ~~~v~~lh~~l~~~eR~~v~~~F~~g-~~~VLvaT~v~~~GiDip~V~~VI~~d~p-~s~~~y~Qr~GRagR~G 632 (747)
--.|+|..+|.+|+++++.|+.+ .+.-|+-+.|+.++||+|..+++|+.... .|..+-.||.||..|+.
T Consensus 565 ---KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 565 ---KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ---CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 34689999999999999999865 57889999999999999999999987654 36678899999999875
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=2.4e-16 Score=187.72 Aligned_cols=313 Identities=21% Similarity=0.279 Sum_probs=190.3
Q ss_pred CCcHHHHHHHH----HHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH-HHH
Q 004518 301 KMTIVQEATLP----VLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA-TEA 375 (747)
Q Consensus 301 ~~t~iQ~~~i~----~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~-~~~ 375 (747)
..++-|.+.+. .+.+++.++++|+||+|||++|++|++... .+.++||++||++|+.|+. ..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 57899988543 445678899999999999999999988753 1245999999999999994 567
Q ss_pred HHHhhhCCCceEEEEeCCcchHHH--HH---------------------------------------------H------
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALE--QK---------------------------------------------R------ 402 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~--~~---------------------------------------------~------ 402 (747)
..+.+.. ++.+.++.|+.+.--. .. .
T Consensus 313 ~~l~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 313 KAIQEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 6666554 5666666665432100 00 0
Q ss_pred -----------------HhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC-----c-------HH
Q 004518 403 -----------------MQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG-----F-------RK 453 (747)
Q Consensus 403 -----------------l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~-----f-------~~ 453 (747)
-....++|+|+....|+..+..+. .+..++++||||||++.+.. . ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~----~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~ 467 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK----DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQ 467 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc----CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHH
Confidence 000116899999988877765442 24579999999999865310 0 00
Q ss_pred H-------------------------------------------HHH-------H-----------HHHC----------
Q 004518 454 D-------------------------------------------IEK-------I-----------IAAV---------- 462 (747)
Q Consensus 454 ~-------------------------------------------l~~-------i-----------l~~~---------- 462 (747)
. +.. + +...
T Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~ 547 (820)
T PRK07246 468 TIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEK 547 (820)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 0 000 0 0000
Q ss_pred -----------------------CCCCeEEEEeccCC--hHHHHHHHHHhcCC-ceeeeeccCCccccccceeEEEEe--
Q 004518 463 -----------------------PKQRQTLLFSATVP--EEVRQICHIALKRD-HEFINTVEEGSEETHEQVRQMHLV-- 514 (747)
Q Consensus 463 -----------------------~~~~q~il~SATl~--~~v~~l~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~-- 514 (747)
+....+|++|||++ +.. .+.. .+.-. ...... . .........++.
T Consensus 548 ~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~-~lGl~~~~~~~~-~----~~~~~~~~~~i~~~ 620 (820)
T PRK07246 548 QSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLAD-LLGFEEYLFHKI-E----KDKKQDQLVVVDQD 620 (820)
T ss_pred CCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHH-HcCCCccceecC-C----CChHHccEEEeCCC
Confidence 01136789999985 222 2322 22211 111110 0 111111111111
Q ss_pred cCc------ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCc
Q 004518 515 APL------DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG 588 (747)
Q Consensus 515 ~~~------~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~ 588 (747)
.+. +.....+...+.... ..++++||+++|+...+.++..|....+.+ ...|... .+.+++++|+.+..
T Consensus 621 ~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 621 MPLVTETSDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 011 112234555554444 345799999999999999999997654444 3333222 25678999999988
Q ss_pred cEEEeeCCcccccCCCC--ccEEEEeCCCC----C--------------------------hhhHHHhhccCCCCCCcce
Q 004518 589 LILVTSDVSARGVDYPD--VTLVIQVGLPS----D--------------------------REQYIHRLGRTGRKGKEGQ 636 (747)
Q Consensus 589 ~VLvaT~v~~~GiDip~--V~~VI~~d~p~----s--------------------------~~~y~Qr~GRagR~G~~G~ 636 (747)
.||++|..+.+|||+|+ ...||...+|. + ...+.|-+||.-|....--
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 99999999999999973 56677777773 1 1234799999999864332
Q ss_pred EEEEeC
Q 004518 637 GILLLA 642 (747)
Q Consensus 637 ~~~l~s 642 (747)
+++++.
T Consensus 776 vv~ilD 781 (820)
T PRK07246 776 AVLILD 781 (820)
T ss_pred EEEEEC
Confidence 444444
No 130
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.76 E-value=5.6e-17 Score=160.96 Aligned_cols=179 Identities=40% Similarity=0.588 Sum_probs=143.3
Q ss_pred CCCCCCcHHHHHHHHHHHCC-CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKG-KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~-~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
.++..++++|.+++..+.+. +.++++++||+|||+++..+++..+.... ..+++|++|++.++.|+...+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHH
Confidence 46778999999999999998 99999999999999998988888775432 234999999999999999998
Q ss_pred HHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHH
Q 004518 376 STLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 455 (747)
Q Consensus 376 ~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l 455 (747)
..++... ........++.........+..+..+|+++|++.+.+.+.... .....++++||||||.+....+...+
T Consensus 75 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~ 150 (201)
T smart00487 75 KKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQL 150 (201)
T ss_pred HHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHH
Confidence 8876543 2233444555544444555555545999999999999887653 34567899999999999876788888
Q ss_pred HHHHHHCCCCCeEEEEeccCChHHHHHHHHHhc
Q 004518 456 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALK 488 (747)
Q Consensus 456 ~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~ 488 (747)
..++..+++..+++++|||++.........++.
T Consensus 151 ~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 151 EKLLKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHHHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 888888888899999999999888887777765
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.74 E-value=2.6e-15 Score=172.97 Aligned_cols=132 Identities=22% Similarity=0.215 Sum_probs=96.3
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
.|+ .++++|--+.-.++ +.-|+.+.||.|||+++.+|+.-..+.. ..|.||+++..||.+-++++.
T Consensus 73 lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G-----------~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTG-----------KGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred hCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcC-----------CceEEEeCCHHHHHHHHHHHH
Confidence 344 47788877655554 4579999999999999999986554432 238999999999999999999
Q ss_pred HHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchh-----HHHHHHccccccccCCCccEEEEeCCcccc
Q 004518 377 TLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGR-----LRDHIENTAGFATRLMGVKVLVLDEADHLL 447 (747)
Q Consensus 377 ~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~-----Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll 447 (747)
.+..+. +++++++.++.+....... -.+||+++|..- |.+.|.....- .....+.++||||||.++
T Consensus 139 pvy~~L-GLsvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~-~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 139 QIYRFL-GLTVGLIQEGMSSEERKKN---YLKDITYVTNSELGFDYLRDNMALSLSD-VVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHc-CCceeeeCCCCChHHHHHh---cCCCCEecCCccccccchhhccCcChHH-hhccccceeeeecchhhe
Confidence 999988 8999998887765432222 237999999864 44444221111 224678999999999854
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=4.1e-17 Score=174.40 Aligned_cols=344 Identities=11% Similarity=0.102 Sum_probs=228.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 004518 293 GIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372 (747)
Q Consensus 293 ~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 372 (747)
.+..+.-+....+|.+++..+.+|+++++.-.|.+||.++|++.+...+.+... ...+++.|+.++++...
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~---------s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA---------TNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc---------cceecchhHHHHhhccC
Confidence 345566778899999999999999999999999999999999998887765432 22788999999987654
Q ss_pred HHHHHHhhhCCCce--EEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHH-ccccccccCCCccEEEEeCCccccCC
Q 004518 373 TEASTLLKYHPSIG--VQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIE-NTAGFATRLMGVKVLVLDEADHLLDM 449 (747)
Q Consensus 373 ~~~~~l~~~~~~~~--~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~-~~~~~~~~L~~i~~vIiDEAh~ll~~ 449 (747)
+.+.-.....+..+ +.-.+.+.+ ......+...+.+++++.|......+. +...+...+-...++++||+|..+-.
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~s-E~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLS-ETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCC-chhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 32211111111111 111222222 223344555668999999988765443 33223333445668899999976532
Q ss_pred C---cHHHHHHHHHHC-----CCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecC---c-
Q 004518 450 G---FRKDIEKIIAAV-----PKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP---L- 517 (747)
Q Consensus 450 ~---f~~~l~~il~~~-----~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---~- 517 (747)
- ....+..++..+ ....|++-.|||+...+.-....+-.+....+....... ..+++.+-.+ +
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs-----~~K~~V~WNP~~~P~ 502 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS-----SEKLFVLWNPSAPPT 502 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC-----ccceEEEeCCCCCCc
Confidence 1 112223332222 356899999999977665544444433444444322221 1222222111 1
Q ss_pred --ccc---hHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc----c----ccceeccCCCCHHHHHHHHHHHh
Q 004518 518 --DLH---FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL----K----LNVREIHSRKPQSYRTRVSDEFR 584 (747)
Q Consensus 518 --~~k---~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~----~----~~v~~lh~~l~~~eR~~v~~~F~ 584 (747)
..+ ......++.+.... +-++|-||++++.|+.+....++. + -.+..+.|+...++|.++....-
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F 580 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF 580 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh
Confidence 111 22222333333332 349999999999998876555432 1 13667889999999999999999
Q ss_pred cCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEe--CcchHHHHHHhh
Q 004518 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLL--APWEEFFLSTIK 653 (747)
Q Consensus 585 ~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~--s~~e~~~l~~l~ 653 (747)
.|+..-+|||++++-||||.+.+.|+++++|.|.+.+.|..|||||..++..++.+. .|-|..|+..-.
T Consensus 581 ~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~ 651 (1034)
T KOG4150|consen 581 GGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPD 651 (1034)
T ss_pred CCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcH
Confidence 999999999999999999999999999999999999999999999999888766554 477888876443
No 133
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=6.5e-15 Score=169.34 Aligned_cols=129 Identities=26% Similarity=0.286 Sum_probs=98.8
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.++++|-..--.++.| -|+.+.||-|||+++.+|+.-..+..+. |.||++...||..-++++..+..
T Consensus 85 r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~Gkg-----------VhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGKG-----------VHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCCC-----------eEEEeCCHHHHHhHHHHHHHHHH
Confidence 5778887766666555 5999999999999999998876654432 89999999999999999999999
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-----HHHHHccccccccCCCccEEEEeCCcccc
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-----RDHIENTAGFATRLMGVKVLVLDEADHLL 447 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-----l~~l~~~~~~~~~L~~i~~vIiDEAh~ll 447 (747)
+. +++++++.++...... +. .-.|||+++|+..| .+.|...... .....+.++||||||.++
T Consensus 152 ~L-GLtvg~i~~~~~~~er-r~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~-~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FL-GLSVGLIQQDMSPEER-KK--NYACDITYATNSELGFDYLRDNMATDISE-VVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred Hh-CCeEEEECCCCChHHH-HH--hcCCCeEEecCCcccccchhhhhcccccc-cccCccceEEEeccccee
Confidence 88 8999998877654332 22 23489999999877 5555432211 235788999999999865
No 134
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=2.1e-16 Score=146.71 Aligned_cols=120 Identities=38% Similarity=0.659 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 519 ~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
.+...+..++..... ...++||||++...++.++..|...+..+..+||.++..+|..++..|.++...||++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 677777777776533 456999999999999999999998889999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEE
Q 004518 599 RGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640 (747)
Q Consensus 599 ~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l 640 (747)
+|+|+|++++||+++.|++...|.|++||++|.|+.|.|+++
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998888764
No 135
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.69 E-value=8.5e-15 Score=167.44 Aligned_cols=342 Identities=15% Similarity=0.167 Sum_probs=205.9
Q ss_pred CCcHHHHHHHHHHHCC----------CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 004518 301 KMTIVQEATLPVLLKG----------KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQ 370 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~----------~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q 370 (747)
.++|+|++.+.-+..+ ..+|++..+|+|||+. +++.++.+++..+.... .=-+.|||+| ..|+..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~---~~~k~lVV~P-~sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP---LINKPLVVAP-SSLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc---cccccEEEcc-HHHHHH
Confidence 4789999998766432 3478899999999998 66677777665432110 1245899999 578889
Q ss_pred HHHHHHHHhhhCCCceEEEEeCCcchH-HH---HHHHh--cCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc
Q 004518 371 AATEASTLLKYHPSIGVQVVIGGTRLA-LE---QKRMQ--ANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~~gg~~~~-~~---~~~l~--~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh 444 (747)
|++++.++...+ .+....+++..... .. +..+. .-..-|++.+++.+.+++.. ..+..++++|+||+|
T Consensus 313 WkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 313 WKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCC
Confidence 999998886532 45555556555420 00 01010 11246788888988877664 345689999999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCeEEEEeccC-ChHHHHHHHHHhcCCceeeeeccC-------------Cc---------
Q 004518 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFSATV-PEEVRQICHIALKRDHEFINTVEE-------------GS--------- 501 (747)
Q Consensus 445 ~ll~~~f~~~l~~il~~~~~~~q~il~SATl-~~~v~~l~~~~~~~~~~~i~~~~~-------------~~--------- 501 (747)
++-+.. ..+.+.+..+.-++ -|++|.|+ -+++.+++....-..|.++..... ..
T Consensus 387 rlkN~~--s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 387 RLKNSD--SLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred Cccchh--hHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 987643 23344455554444 56789996 344445444332222222211100 00
Q ss_pred ------------------------cccccceeEEEEecCcccc-hHHHHHHHHH-------------------Hhh----
Q 004518 502 ------------------------EETHEQVRQMHLVAPLDLH-FPLLYVLLRE-------------------HVA---- 533 (747)
Q Consensus 502 ------------------------~~~~~~i~~~~~~~~~~~k-~~~l~~~l~~-------------------~~~---- 533 (747)
...+ ....+.+.+.+... ..++..++.. .+.
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP-~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLP-GKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCC-CceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 0000 01111122222221 1111111111 000
Q ss_pred --------c-----C--------------------------------CCCeEEEEe---cc-hhHHHHHHHHHHhccccc
Q 004518 534 --------D-----N--------------------------------PEYKVLVFC---TT-AMVTRMVADLLGELKLNV 564 (747)
Q Consensus 534 --------~-----~--------------------------------~~~k~LVF~---~s-~~~~~~l~~~L~~~~~~v 564 (747)
+ + ...++++|+ .. ....+.+.+.++-.|+.+
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~ 622 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEV 622 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceE
Confidence 0 0 000222332 22 222333333344458899
Q ss_pred eeccCCCCHHHHHHHHHHHhcCC---ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEE--
Q 004518 565 REIHSRKPQSYRTRVSDEFRKSK---GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL-- 639 (747)
Q Consensus 565 ~~lh~~l~~~eR~~v~~~F~~g~---~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~-- 639 (747)
+.+||.|+..+|.++++.|.+.. .-.|++|-+.+.||++-|...||.||+.|||+.-.|.++|+-|.|+.-.|++
T Consensus 623 ~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 623 LRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred EEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 99999999999999999998643 3356677888899999999999999999999999999999999998777665
Q ss_pred EeC---cchHHHHHHhhhCCC
Q 004518 640 LLA---PWEEFFLSTIKDLPI 657 (747)
Q Consensus 640 l~s---~~e~~~l~~l~~~~i 657 (747)
|++ ..|..|-.+..+-.+
T Consensus 703 LlatGtiEEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 703 LLATGTIEEKIYQRQTHKEGL 723 (776)
T ss_pred eecCCCchHHHHHHHHHhhhh
Confidence 443 355555555555333
No 136
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.68 E-value=2.8e-15 Score=166.76 Aligned_cols=321 Identities=18% Similarity=0.197 Sum_probs=207.8
Q ss_pred CcHHHHHHHHHHH----CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 302 MTIVQEATLPVLL----KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 302 ~t~iQ~~~i~~il----~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
+-++|.-.+.|+. ++-+.|+..++|-|||.+ .+..+..|.+.+. +|+ -|||||.-.|- +|+++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-------~gp-HLVVvPsSTle----NWlrE 466 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-------PGP-HLVVVPSSTLE----NWLRE 466 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-------CCC-cEEEecchhHH----HHHHH
Confidence 6789999888763 345679999999999985 3334444443322 233 68999976554 45667
Q ss_pred HhhhCCCceEEEEeCCcchHHHHHHHhc-C--CCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC--cH
Q 004518 378 LLKYHPSIGVQVVIGGTRLALEQKRMQA-N--PCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG--FR 452 (747)
Q Consensus 378 l~~~~~~~~~~~~~gg~~~~~~~~~l~~-~--~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~--f~ 452 (747)
+.+++|.+.+..++|...-..+.+.... + .++|+++|+.....-- .+..| +.-.+++++|+||+|.|.+.. ..
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k-dDRsf-lk~~~~n~viyDEgHmLKN~~SeRy 544 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK-DDRSF-LKNQKFNYVIYDEGHMLKNRTSERY 544 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh-HHHHH-HHhccccEEEecchhhhhccchHHH
Confidence 7778899999999998866655553332 2 5899999987553111 11112 233578999999999988754 23
Q ss_pred HHHHHHHHHCCCCCeEEEEeccC-ChHHHHHHHH---------------------------------------------H
Q 004518 453 KDIEKIIAAVPKQRQTLLFSATV-PEEVRQICHI---------------------------------------------A 486 (747)
Q Consensus 453 ~~l~~il~~~~~~~q~il~SATl-~~~v~~l~~~---------------------------------------------~ 486 (747)
.++..|- ..+-|++|.|. -+.+.+++.. .
T Consensus 545 ~~LM~I~-----An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 545 KHLMSIN-----ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred HHhcccc-----ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHh
Confidence 3333332 23357788884 1111111100 0
Q ss_pred -------------hcCCceeeeecc---CCc---------------------cc----------------ccc-ceeEEE
Q 004518 487 -------------LKRDHEFINTVE---EGS---------------------EE----------------THE-QVRQMH 512 (747)
Q Consensus 487 -------------~~~~~~~i~~~~---~~~---------------------~~----------------~~~-~i~~~~ 512 (747)
+..-|+.+..+. -.. .. .+. -++++|
T Consensus 620 m~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y 699 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIY 699 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhc
Confidence 000000000000 000 00 000 000000
Q ss_pred E------------------ecC-------------------------------------cccchHHHHHHHHHHhhcCCC
Q 004518 513 L------------------VAP-------------------------------------LDLHFPLLYVLLREHVADNPE 537 (747)
Q Consensus 513 ~------------------~~~-------------------------------------~~~k~~~l~~~l~~~~~~~~~ 537 (747)
. .+. ...|+..|..+|..... .+
T Consensus 700 ~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~--~G 777 (941)
T KOG0389|consen 700 TDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK--KG 777 (941)
T ss_pred cHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh--cC
Confidence 0 000 00123333444443322 23
Q ss_pred CeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCC--ccEEEeeCCcccccCCCCccEEEEeCCC
Q 004518 538 YKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK--GLILVTSDVSARGVDYPDVTLVIQVGLP 615 (747)
Q Consensus 538 ~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~--~~VLvaT~v~~~GiDip~V~~VI~~d~p 615 (747)
.++|||..-....+.|.-+|...++.++.|.|.+....|..++..|...+ .-+|++|.+.+-|||+-..++||.+|..
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d 857 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID 857 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC
Confidence 59999999988999999999999999999999999999999999998765 3578899999999999999999999999
Q ss_pred CChhhHHHhhccCCCCCCc--ceEEEEeCcc
Q 004518 616 SDREQYIHRLGRTGRKGKE--GQGILLLAPW 644 (747)
Q Consensus 616 ~s~~~y~Qr~GRagR~G~~--G~~~~l~s~~ 644 (747)
.||-.-.|.--||.|.|+. -+++.|++..
T Consensus 858 FNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred CCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 9999999999999999964 4566677653
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=3e-14 Score=172.89 Aligned_cols=119 Identities=16% Similarity=0.219 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccc--cceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccc
Q 004518 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKL--NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARG 600 (747)
Q Consensus 523 ~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~--~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~G 600 (747)
.+...|...+.. .++++|||++|+.....++..|..... .+..+.-+++...|.++++.|+.+...||++|..+..|
T Consensus 739 ~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 739 EVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 444445444333 356999999999999999999975422 12233334444558899999999988999999999999
Q ss_pred cCCCC--ccEEEEeCCCC-Ch-----------------------------hhHHHhhccCCCCCCcceEEEEeC
Q 004518 601 VDYPD--VTLVIQVGLPS-DR-----------------------------EQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 601 iDip~--V~~VI~~d~p~-s~-----------------------------~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
||+|+ +++||...+|. +| ..+.|.+||.-|....--+++++.
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 99997 48899888774 11 123789999999875433444444
No 138
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=1.2e-15 Score=163.88 Aligned_cols=279 Identities=18% Similarity=0.175 Sum_probs=184.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCc
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT 394 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~ 394 (747)
..+-++-+|||.||||.- +|+++...+. .++.-|.|-||.++++.+... ++.|.+++|..
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~~aks-----------GvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE 249 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLKSAKS-----------GVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEE 249 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHhhhcc-----------ceecchHHHHHHHHHHHhhhc-----CCCccccccce
Confidence 345688999999999984 5677765543 688999999999999999887 67777777765
Q ss_pred chHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHH-HHCCCCCeEEEEec
Q 004518 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII-AAVPKQRQTLLFSA 473 (747)
Q Consensus 395 ~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il-~~~~~~~q~il~SA 473 (747)
....... .+.++.+-||-++.- .-..+++.||||++.|.+....-.|.+.+ ........+.+
T Consensus 250 ~~~~~~~---~~~a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG--- 312 (700)
T KOG0953|consen 250 RRFVLDN---GNPAQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG--- 312 (700)
T ss_pred eeecCCC---CCcccceEEEEEEee-----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---
Confidence 4322110 223677788876551 12468999999999998866554454433 22222222222
Q ss_pred cCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHH
Q 004518 474 TVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMV 553 (747)
Q Consensus 474 Tl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l 553 (747)
.+.+-.+.+..+.....-+. ++.+....+. .... .+...+..-.++-+| .|-|++++-.+
T Consensus 313 --epsvldlV~~i~k~TGd~ve------------v~~YeRl~pL----~v~~-~~~~sl~nlk~GDCv-V~FSkk~I~~~ 372 (700)
T KOG0953|consen 313 --EPSVLDLVRKILKMTGDDVE------------VREYERLSPL----VVEE-TALGSLSNLKPGDCV-VAFSKKDIFTV 372 (700)
T ss_pred --CchHHHHHHHHHhhcCCeeE------------EEeecccCcc----eehh-hhhhhhccCCCCCeE-EEeehhhHHHH
Confidence 23344445444432211111 1111111111 0111 111222222334444 45577888889
Q ss_pred HHHHHhcccc-ceeccCCCCHHHHHHHHHHHhc--CCccEEEeeCCcccccCCCCccEEEEeCCC---------CChhhH
Q 004518 554 ADLLGELKLN-VREIHSRKPQSYRTRVSDEFRK--SKGLILVTSDVSARGVDYPDVTLVIQVGLP---------SDREQY 621 (747)
Q Consensus 554 ~~~L~~~~~~-v~~lh~~l~~~eR~~v~~~F~~--g~~~VLvaT~v~~~GiDip~V~~VI~~d~p---------~s~~~y 621 (747)
...+.+.+.. +.+|+|.+++..|.+.-..|.+ +..+||||||+.++|+|+ +|+.||+|++- ....+.
T Consensus 373 k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqi 451 (700)
T KOG0953|consen 373 KKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQI 451 (700)
T ss_pred HHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHH
Confidence 9888888766 9999999999999999999987 899999999999999999 99999999864 367788
Q ss_pred HHhhccCCCCCC---cceEEEEeCcchHHHHHHh
Q 004518 622 IHRLGRTGRKGK---EGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 622 ~Qr~GRagR~G~---~G~~~~l~s~~e~~~l~~l 652 (747)
.|.+|||||.|. .|.+..|.. .|...+.++
T Consensus 452 kQIAGRAGRf~s~~~~G~vTtl~~-eDL~~L~~~ 484 (700)
T KOG0953|consen 452 KQIAGRAGRFGSKYPQGEVTTLHS-EDLKLLKRI 484 (700)
T ss_pred HHHhhcccccccCCcCceEEEeeH-hhHHHHHHH
Confidence 999999999973 566666653 444555444
No 139
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.67 E-value=4.6e-15 Score=171.04 Aligned_cols=327 Identities=17% Similarity=0.239 Sum_probs=201.5
Q ss_pred CcHHHHHHHHHHH---CC-CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 302 MTIVQEATLPVLL---KG-KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 302 ~t~iQ~~~i~~il---~~-~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
++.||++.+.|+. ++ =+.|+|..+|-|||++.+--+....++.+. ....+...-.|||||. .|+--|..++.+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--ESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--cchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 6789999998763 22 478999999999999644333344444421 2223334448999995 677777777776
Q ss_pred HhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHH
Q 004518 378 LLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEK 457 (747)
Q Consensus 378 l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~ 457 (747)
++ |-+++..++|+.......+.- -++.+|+|+++..+.+-+.. +.-..|.|+|+||.|-|-+.. ..+.+
T Consensus 1053 f~---pfL~v~~yvg~p~~r~~lR~q-~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVikN~k--tkl~k 1121 (1549)
T KOG0392|consen 1053 FF---PFLKVLQYVGPPAERRELRDQ-YKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVIKNSK--TKLTK 1121 (1549)
T ss_pred hc---chhhhhhhcCChHHHHHHHhh-ccccceEEeeHHHHHHHHHH-----HHhcccceEEecCcceecchH--HHHHH
Confidence 64 446777777776544433333 23479999999988744432 111367899999999887643 22223
Q ss_pred HHHHCCCCCeEEEEeccCC-hHHHHH---HHH------------------------------------------------
Q 004518 458 IIAAVPKQRQTLLFSATVP-EEVRQI---CHI------------------------------------------------ 485 (747)
Q Consensus 458 il~~~~~~~q~il~SATl~-~~v~~l---~~~------------------------------------------------ 485 (747)
..+.+..+. -+++|.|.- +.+.++ +..
T Consensus 1122 avkqL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1122 AVKQLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred HHHHHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 333333333 356777741 111111 000
Q ss_pred ----------Hhc-CCceeeee---------------------------ccC--Cccccc-----ccee-------EE-E
Q 004518 486 ----------ALK-RDHEFINT---------------------------VEE--GSEETH-----EQVR-------QM-H 512 (747)
Q Consensus 486 ----------~~~-~~~~~i~~---------------------------~~~--~~~~~~-----~~i~-------~~-~ 512 (747)
.+. -|+.+|.. ++. ....+. ..+. +. .
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaL 1280 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPAL 1280 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcce
Confidence 000 01111100 000 000000 0000 00 0
Q ss_pred EecC-----------------------cccchHHHHHHHHHHhhc------------CCCCeEEEEecchhHHHHHHHHH
Q 004518 513 LVAP-----------------------LDLHFPLLYVLLREHVAD------------NPEYKVLVFCTTAMVTRMVADLL 557 (747)
Q Consensus 513 ~~~~-----------------------~~~k~~~l~~~l~~~~~~------------~~~~k~LVF~~s~~~~~~l~~~L 557 (747)
+..+ ..-|...|..++..---. -...++||||.-+..++.+.+-|
T Consensus 1281 vlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1281 VLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 1111 011233333333321100 02359999999999999998877
Q ss_pred Hhc---cccceeccCCCCHHHHHHHHHHHhcC-CccEEE-eeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCC
Q 004518 558 GEL---KLNVREIHSRKPQSYRTRVSDEFRKS-KGLILV-TSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632 (747)
Q Consensus 558 ~~~---~~~v~~lh~~l~~~eR~~v~~~F~~g-~~~VLv-aT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G 632 (747)
-+. .+.+..+.|..++.+|.++.++|.++ .++||+ +|-|.+-|+|+.+.+.||+++-.|||..-+|.+-||.|.|
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhc
Confidence 665 34456899999999999999999999 577655 7789999999999999999999999999999999999999
Q ss_pred Ccce--EEEEeCc
Q 004518 633 KEGQ--GILLLAP 643 (747)
Q Consensus 633 ~~G~--~~~l~s~ 643 (747)
+.-. +|.|++.
T Consensus 1441 QKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1441 QKRVVNVYRLITR 1453 (1549)
T ss_pred Cceeeeeeeehhc
Confidence 7654 4555554
No 140
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.66 E-value=7.4e-15 Score=157.61 Aligned_cols=125 Identities=27% Similarity=0.367 Sum_probs=107.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
+.+...+-|..-++....++ .++||-+-|++.++.|.++|.+.|+++..+|+...+-+|..++...+.|...|||.-|
T Consensus 427 p~~~QvdDL~~EI~~r~~~~--eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 427 PTKGQVDDLLSEIRKRVAKN--ERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred cCCCcHHHHHHHHHHHHhcC--CeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh
Confidence 33444445555555544443 5999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCccEEEEeCCC-----CChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 596 VSARGVDYPDVTLVIQVGLP-----SDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d~p-----~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
.+-.|||+|.|.+|..+|.. .|-.+.+|-+|||+|. -.|.++++...
T Consensus 505 LLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 505 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred hhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 99999999999999988754 5888999999999998 48999887653
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.65 E-value=1.1e-13 Score=158.16 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhc----CCccEEEeeCCccc
Q 004518 524 LYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK----SKGLILVTSDVSAR 599 (747)
Q Consensus 524 l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~----g~~~VLvaT~v~~~ 599 (747)
+...+...+.. ..+++||.++|+..+..++..|...--..+.+.|..+ .+..++++|+. |...||++|..+.+
T Consensus 458 ~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 458 VSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 33444444433 3469999999999999999999653212334445443 35678888887 47899999999999
Q ss_pred ccCC--------C--CccEEEEeCCCC
Q 004518 600 GVDY--------P--DVTLVIQVGLPS 616 (747)
Q Consensus 600 GiDi--------p--~V~~VI~~d~p~ 616 (747)
|||+ | .+++||+..+|.
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCC
Confidence 9999 3 488999888873
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.64 E-value=5e-16 Score=130.99 Aligned_cols=78 Identities=32% Similarity=0.560 Sum_probs=75.5
Q ss_pred HHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCC
Q 004518 555 DLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG 632 (747)
Q Consensus 555 ~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G 632 (747)
++|+..++.+..+||.+++.+|..+++.|.++...|||||+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 143
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.63 E-value=5.5e-15 Score=165.56 Aligned_cols=326 Identities=20% Similarity=0.233 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCC
Q 004518 304 IVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP 383 (747)
Q Consensus 304 ~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 383 (747)
.+-..++.++..++.++|.+.||+|||+.+..-+|+.++...... -.-+.+..|||..++.+++.+..--....
T Consensus 381 ~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~------~~na~v~qprrisaisiaerva~er~e~~ 454 (1282)
T KOG0921|consen 381 QYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA------SFNAVVSQPRRISAISLAERVANERGEEV 454 (1282)
T ss_pred HHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc------cccceeccccccchHHHHHHHHHhhHHhh
Confidence 344567778888999999999999999998888888887665321 12278899999999998886554321110
Q ss_pred C--ceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcccc-CCCcHHHHHHHHH
Q 004518 384 S--IGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEKIIA 460 (747)
Q Consensus 384 ~--~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll-~~~f~~~l~~il~ 460 (747)
+ +.+.+.+..... ...-.|++||-|.|++.+.+. +..+.++|+||.|+.- +..|...+..-+.
T Consensus 455 g~tvgy~vRf~Sa~p--------rpyg~i~fctvgvllr~~e~g------lrg~sh~i~deiherdv~~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 455 GETCGYNVRFDSATP--------RPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHERDVDTDFVLIVLREMI 520 (1282)
T ss_pred ccccccccccccccc--------ccccceeeeccchhhhhhhhc------ccccccccchhhhhhccchHHHHHHHHhhh
Confidence 1 111122111110 111379999999999999876 5688999999999643 3446555555555
Q ss_pred HCCCCCeEEEEeccCChHHHHH--------------------HHHHhcCCceeeee---------ccCCcc-ccccceeE
Q 004518 461 AVPKQRQTLLFSATVPEEVRQI--------------------CHIALKRDHEFINT---------VEEGSE-ETHEQVRQ 510 (747)
Q Consensus 461 ~~~~~~q~il~SATl~~~v~~l--------------------~~~~~~~~~~~i~~---------~~~~~~-~~~~~i~~ 510 (747)
.+.+...+++||||+..+.... +...+..+..++.. ...... .....-+.
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 5556666677777765432211 11111000000000 000000 00000000
Q ss_pred ----------------EEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-------cccceec
Q 004518 511 ----------------MHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL-------KLNVREI 567 (747)
Q Consensus 511 ----------------~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~-------~~~v~~l 567 (747)
++.....+..+.++..++......+-.+.++||.+.+..+..|.+.|... .+.++++
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~ 680 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPL 680 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccc
Confidence 01111222335555666666656666789999999999999999888653 4679999
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCC------------------CChhhHHHhhccCC
Q 004518 568 HSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLP------------------SDREQYIHRLGRTG 629 (747)
Q Consensus 568 h~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p------------------~s~~~y~Qr~GRag 629 (747)
|+.+...++.++++..+.|..++|+.|+++++.++|.++.+||+.+.- .+.-..+||.||+|
T Consensus 681 Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 681 HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 999999999999999999999999999999999999999999865432 14556699999999
Q ss_pred CCCCcceEEEEeCcchHHHHH
Q 004518 630 RKGKEGQGILLLAPWEEFFLS 650 (747)
Q Consensus 630 R~G~~G~~~~l~s~~e~~~l~ 650 (747)
|. ++|.|..+++..--..++
T Consensus 761 rv-R~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 761 RV-RPGFCFHLCSRARFEALE 780 (1282)
T ss_pred ee-cccccccccHHHHHHHHH
Confidence 98 699999988764433333
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=5e-13 Score=155.38 Aligned_cols=124 Identities=16% Similarity=0.216 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 519 LHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 519 ~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
.|+..+..-+..... .+.++||-+.|+...+.++++|...++..-+|++.....+..-|-+.=+.| .|-|||++|+
T Consensus 612 eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAG 687 (1112)
T PRK12901 612 EKYNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcC
Confidence 345555555554443 345999999999999999999999999999998886655554444433333 5999999999
Q ss_pred cccCCC--------CccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchH
Q 004518 599 RGVDYP--------DVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEE 646 (747)
Q Consensus 599 ~GiDip--------~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~ 646 (747)
||-||. |==+||-...+.|..--.|-.|||||.|.+|.+..|+|-.|.
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999996 334899999999999999999999999999999999987664
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.58 E-value=2.2e-13 Score=144.62 Aligned_cols=317 Identities=16% Similarity=0.205 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHH-CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 301 KMTIVQEATLPVLL-KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 301 ~~t~iQ~~~i~~il-~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
.+-|+|.+.+...+ .|-.+++...+|-|||++++ ++...+...+ -.|||||.. +--.|++.+.+++
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl--aIA~yyraEw----------plliVcPAs-vrftWa~al~r~l 264 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL--AIARYYRAEW----------PLLIVCPAS-VRFTWAKALNRFL 264 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH--HHHHHHhhcC----------cEEEEecHH-HhHHHHHHHHHhc
Confidence 35799999887655 56789999999999999643 3344554433 189999964 4446677776665
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHH
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il 459 (747)
.... .+.++.++.+...+.- ....|.|.+++.|..+-.. ..-..+.+||+||.|.|-+..-. ....++
T Consensus 265 ps~~--pi~vv~~~~D~~~~~~----t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~sktk-r~Ka~~ 332 (689)
T KOG1000|consen 265 PSIH--PIFVVDKSSDPLPDVC----TSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDSKTK-RTKAAT 332 (689)
T ss_pred cccc--ceEEEecccCCccccc----cCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhccchh-hhhhhh
Confidence 4321 2445555554322111 1147889999887543221 11235899999999988764422 244444
Q ss_pred HHCCCCCeEEEEeccC----Ch---------------HHHHHHHHHhcCCceeeeeccCC--------------------
Q 004518 460 AAVPKQRQTLLFSATV----PE---------------EVRQICHIALKRDHEFINTVEEG-------------------- 500 (747)
Q Consensus 460 ~~~~~~~q~il~SATl----~~---------------~v~~l~~~~~~~~~~~i~~~~~~-------------------- 500 (747)
..+..-..+|++|.|. |. ...++...||.....-+......
T Consensus 333 dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRl 412 (689)
T KOG1000|consen 333 DLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRL 412 (689)
T ss_pred hHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444455689999995 22 22223333332111000000000
Q ss_pred ----ccccccceeEEEEecCc--c-----------------------------------cchHHHHHHHHH--HhhcCCC
Q 004518 501 ----SEETHEQVRQMHLVAPL--D-----------------------------------LHFPLLYVLLRE--HVADNPE 537 (747)
Q Consensus 501 ----~~~~~~~i~~~~~~~~~--~-----------------------------------~k~~~l~~~l~~--~~~~~~~ 537 (747)
..+.+..-++..+.+.. + .|...+.+.|.. .+...++
T Consensus 413 K~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~ 492 (689)
T KOG1000|consen 413 KADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPP 492 (689)
T ss_pred HHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCC
Confidence 00111111111111110 0 011111111111 1122355
Q ss_pred CeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCC-ccE-EEeeCCcccccCCCCccEEEEeCCC
Q 004518 538 YKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK-GLI-LVTSDVSARGVDYPDVTLVIQVGLP 615 (747)
Q Consensus 538 ~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~-~~V-LvaT~v~~~GiDip~V~~VI~~d~p 615 (747)
.+++|||......+.+...+.+.++....|.|..+...|....+.|+... +.| +++-.+++.|+|+...+.||+..++
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~ 572 (689)
T KOG1000|consen 493 RKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH 572 (689)
T ss_pred ceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec
Confidence 69999999999999999999999999999999999999999999999764 444 5566778899999999999999999
Q ss_pred CChhhHHHhhccCCCCCCcceEEEEeC
Q 004518 616 SDREQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 616 ~s~~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
+||.-.+|.--|+.|.|+...+.+.|.
T Consensus 573 wnPgvLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 573 WNPGVLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred CCCceEEechhhhhhccccceeeEEEE
Confidence 999999999999999998877665553
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.58 E-value=3.2e-14 Score=161.97 Aligned_cols=322 Identities=16% Similarity=0.211 Sum_probs=206.6
Q ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLK----GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~----~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 374 (747)
-..+.+||...+.++.. +-+.|+..+||-|||.+ .+.++..+++.+... || -|||+|+-.|.+.. .
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~------GP-~LvivPlstL~NW~-~- 461 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQ------GP-FLIIVPLSTLVNWS-S- 461 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccC------CC-eEEeccccccCCch-h-
Confidence 34788999999887653 45789999999999987 555666777665422 33 68999998888543 3
Q ss_pred HHHHhhhCCCceEEEEeCCcchHHH-HHHHhcCCCcEEEECchhHHHHHHccccccccCC--CccEEEEeCCccccCCCc
Q 004518 375 ASTLLKYHPSIGVQVVIGGTRLALE-QKRMQANPCQILVATPGRLRDHIENTAGFATRLM--GVKVLVLDEADHLLDMGF 451 (747)
Q Consensus 375 ~~~l~~~~~~~~~~~~~gg~~~~~~-~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~--~i~~vIiDEAh~ll~~~f 451 (747)
++..+.|.+....+.|....... ...+..+.++|+++|++.+.. ++ ..|+ ++.++||||.|+|.+..
T Consensus 462 --Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk---~lLsKI~W~yMIIDEGHRmKNa~- 531 (1157)
T KOG0386|consen 462 --EFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DK---ALLSKISWKYMIIDEGHRMKNAI- 531 (1157)
T ss_pred --hccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CH---HHHhccCCcceeecccccccchh-
Confidence 34445677776666665443322 234455779999999887753 22 1233 46789999999987521
Q ss_pred HHHHHHHHHHCCCCCeEEEEeccC--------------------------------------------------------
Q 004518 452 RKDIEKIIAAVPKQRQTLLFSATV-------------------------------------------------------- 475 (747)
Q Consensus 452 ~~~l~~il~~~~~~~q~il~SATl-------------------------------------------------------- 475 (747)
..+...+........-+++|.|.
T Consensus 532 -~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLH 610 (1157)
T KOG0386|consen 532 -CKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLH 610 (1157)
T ss_pred -hHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHH
Confidence 12222222111111122223331
Q ss_pred -------------------ChHHHHHHH-----------HHhc-CCceeeee--ccCCc----------------ccccc
Q 004518 476 -------------------PEEVRQICH-----------IALK-RDHEFINT--VEEGS----------------EETHE 506 (747)
Q Consensus 476 -------------------~~~v~~l~~-----------~~~~-~~~~~i~~--~~~~~----------------~~~~~ 506 (747)
|..+..+++ ..+. .+..++.. ..... +....
T Consensus 611 kVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~ 690 (1157)
T KOG0386|consen 611 KVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFA 690 (1157)
T ss_pred HhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhh
Confidence 000000000 0000 00000000 00000 00000
Q ss_pred ceeE----EE---EecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHH
Q 004518 507 QVRQ----MH---LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRV 579 (747)
Q Consensus 507 ~i~~----~~---~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v 579 (747)
++.. .+ ...-..-|+.+|..++.+..+ .++++|.||........+..+|.-.++.+..+.|.....+|-..
T Consensus 691 ~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLka--tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~l 768 (1157)
T KOG0386|consen 691 NVENSYTLHYDIKDLVRVSGKFELLDRILPKLKA--TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDL 768 (1157)
T ss_pred hhccccccccChhHHHHhccHHHHHHhhhHHHHh--cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHH
Confidence 0000 00 011123466677777666543 45699999999999999999999999999999999999999999
Q ss_pred HHHHhcCC---ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCc
Q 004518 580 SDEFRKSK---GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAP 643 (747)
Q Consensus 580 ~~~F~~g~---~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~ 643 (747)
+..|..-. ..+|++|.+.+.|+|+...+.||.||.-|+|....|+.-||.|.|+.-.+.++...
T Consensus 769 l~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 769 LEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred HHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99998644 46788999999999999999999999999999999999999999988777766543
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.56 E-value=1.3e-13 Score=128.52 Aligned_cols=144 Identities=43% Similarity=0.588 Sum_probs=104.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcch
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~ 396 (747)
+++++.++||+|||++++..+........ ..+++|++|++.++.|+.+.+...... ...+..+.+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~---------~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---------GGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---------CCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcch
Confidence 46899999999999988777776654311 235999999999999999988877643 4566666665544
Q ss_pred HHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 397 ~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
.... .......+|+++|++.+...+.... .....+++|||||+|.+....................+++++|||+
T Consensus 70 ~~~~-~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 70 KQQE-KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hHHH-HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4333 2334568999999999988776542 2245789999999999887654443333444556778899999995
No 148
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.55 E-value=1.3e-12 Score=154.60 Aligned_cols=115 Identities=29% Similarity=0.348 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcccc-ceeccCCCCHHHHHHHHHHHhcCCc-cEEEeeCCcccc
Q 004518 523 LLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN-VREIHSRKPQSYRTRVSDEFRKSKG-LILVTSDVSARG 600 (747)
Q Consensus 523 ~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~-v~~lh~~l~~~eR~~v~~~F~~g~~-~VLvaT~v~~~G 600 (747)
.+...+....... ++++|||++|+.....++..|...... ....++..+ +..+++.|..+.- .++|+|..++.|
T Consensus 466 ~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EG 541 (654)
T COG1199 466 KLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEG 541 (654)
T ss_pred HHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCc
Confidence 3444455544444 459999999999999999999876543 334444444 4478888887665 999999999999
Q ss_pred cCCCC--ccEEEEeCCCC------------------------------ChhhHHHhhccCCCCCCcceEEEEe
Q 004518 601 VDYPD--VTLVIQVGLPS------------------------------DREQYIHRLGRTGRKGKEGQGILLL 641 (747)
Q Consensus 601 iDip~--V~~VI~~d~p~------------------------------s~~~y~Qr~GRagR~G~~G~~~~l~ 641 (747)
||+|+ .+.||..++|. -.....|.+||.-|.-..--+++++
T Consensus 542 VD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 542 VDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred ccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 99986 47899888884 1234479999999964333333333
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.52 E-value=9.3e-12 Score=146.80 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-cccceeccCCCCHHHHHHHHHHHh----cCCccEEEeeCC
Q 004518 522 PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL-KLNVREIHSRKPQSYRTRVSDEFR----KSKGLILVTSDV 596 (747)
Q Consensus 522 ~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~-~~~v~~lh~~l~~~eR~~v~~~F~----~g~~~VLvaT~v 596 (747)
..+...|...+. .++++|||++|+...+.++..|... +.. +..++.. .+..+++.|+ .+...||++|..
T Consensus 521 ~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~s 594 (697)
T PRK11747 521 AEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecc
Confidence 345555555555 3457999999999999999998743 333 3334532 4667776666 467889999999
Q ss_pred cccccCCCC--ccEEEEeCCCC----Ch--------------------------hhHHHhhccCCCCCCcceEEEEeC
Q 004518 597 SARGVDYPD--VTLVIQVGLPS----DR--------------------------EQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 597 ~~~GiDip~--V~~VI~~d~p~----s~--------------------------~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
+..|||+|+ +++||...+|. ++ ..+.|.+||.-|....--+++++.
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred ccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 999999997 78999988874 11 123688899999864333344443
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.52 E-value=4.5e-13 Score=155.20 Aligned_cols=317 Identities=16% Similarity=0.173 Sum_probs=207.9
Q ss_pred CCcHHHHHHHHHHHC-CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 301 KMTIVQEATLPVLLK-GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~-~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
...|+|.++++.+.+ +++|++++|+|||||.|+-+.++. +.+-.+++++.|.-+.+..++..+.+-+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------~~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------PDTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------CccceEEEEecchHHHHHHHHHHHHHhh
Confidence 347889888887765 578999999999999998877664 1235679999999999998888666554
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC------cHH
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG------FRK 453 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~------f~~ 453 (747)
....+..+..+.|......... . ..+|+|+||+++-.+ + ..+.+++.|.||+|.+.+.. ...
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lkl~---~-~~~vii~tpe~~d~l-q-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S 1278 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLKLL---Q-KGQVIISTPEQWDLL-Q-------SIQQVDLFIVDELHLIGGVYGAVYEVICS 1278 (1674)
T ss_pred ccccCceEEecCCccccchHHh---h-hcceEEechhHHHHH-h-------hhhhcceEeeehhhhhcccCCceEEEEee
Confidence 4445666666666665443222 1 259999999998433 3 24678999999999887422 122
Q ss_pred HHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHH----HHHHHH
Q 004518 454 DIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPL----LYVLLR 529 (747)
Q Consensus 454 ~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~----l~~~l~ 529 (747)
+..|-..+-+..+++.+|..+.+.- .+ ..+. ...+.+...........--.|.+-....+.++.. .+..+.
T Consensus 1279 -~r~ia~q~~k~ir~v~ls~~lana~-d~--ig~s-~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~ 1353 (1674)
T KOG0951|consen 1279 -MRYIASQLEKKIRVVALSSSLANAR-DL--IGAS-SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIV 1353 (1674)
T ss_pred -HHHHHHHHHhheeEEEeehhhccch-hh--cccc-ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHH
Confidence 5566666677788999998876542 22 1221 2222332222111111111122222333333222 233344
Q ss_pred HHhhcCCCCeEEEEecchhHHHHHHHHHHhc----------------------cccceeccCCCCHHHHHHHHHHHhcCC
Q 004518 530 EHVADNPEYKVLVFCTTAMVTRMVADLLGEL----------------------KLNVREIHSRKPQSYRTRVSDEFRKSK 587 (747)
Q Consensus 530 ~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~----------------------~~~v~~lh~~l~~~eR~~v~~~F~~g~ 587 (747)
.+.. ..++.+||+|+++.+..++.-|-.. .+..++=|.+|+..++..+...|..|.
T Consensus 1354 ~~a~--~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~ 1431 (1674)
T KOG0951|consen 1354 RHAG--NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGA 1431 (1674)
T ss_pred HHhc--CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCc
Confidence 4332 3468999999999998877544221 223333399999999999999999999
Q ss_pred ccEEEeeCCcccccCCCCccEEE----EeC------CCCChhhHHHhhccCCCCCCcceEEEEeCcchHHHHHHh
Q 004518 588 GLILVTSDVSARGVDYPDVTLVI----QVG------LPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTI 652 (747)
Q Consensus 588 ~~VLvaT~v~~~GiDip~V~~VI----~~d------~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~~l~~l 652 (747)
+.|+|.... ..|+-...--+|+ .|| .+...+...|+.|+|.| .|.|+++....++.+++++
T Consensus 1432 i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1432 IQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 999998876 7777664333333 233 23457888999999988 5789999988887776554
No 151
>COG4889 Predicted helicase [General function prediction only]
Probab=99.52 E-value=6.2e-14 Score=156.63 Aligned_cols=324 Identities=19% Similarity=0.224 Sum_probs=181.6
Q ss_pred CCCCCcHHHHHHHHHHHCC----CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 004518 298 GYEKMTIVQEATLPVLLKG----KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373 (747)
Q Consensus 298 g~~~~t~iQ~~~i~~il~~----~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 373 (747)
.-.+|+|+|+.++...+.| ...=+.+.+|+|||+.. |-+.+.+.. .++|+++|+..|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~------------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA------------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh------------hheEeecchHHHHHHHHH
Confidence 3457999999999988765 22344567899999974 445566543 349999999999999887
Q ss_pred HHHHHhhhCCCceEEEEeCCcchH-----------------------HHH-HHHhcCCCcEEEECchhHHHHHHcccccc
Q 004518 374 EASTLLKYHPSIGVQVVIGGTRLA-----------------------LEQ-KRMQANPCQILVATPGRLRDHIENTAGFA 429 (747)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~gg~~~~-----------------------~~~-~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~ 429 (747)
....-.. . .+....++...... ... .+....+--|+++|+..|...-+...
T Consensus 225 ew~~~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe--- 299 (1518)
T COG4889 225 EWTAQKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQE--- 299 (1518)
T ss_pred HHhhccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHH---
Confidence 6543211 1 23333333222111 000 11223446799999999876654321
Q ss_pred ccCCCccEEEEeCCccccCCCcHHHHHHHHHHCC-----CCCeEEEEeccCC---hHHHHHHHH----------------
Q 004518 430 TRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVP-----KQRQTLLFSATVP---EEVRQICHI---------------- 485 (747)
Q Consensus 430 ~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~-----~~~q~il~SATl~---~~v~~l~~~---------------- 485 (747)
.-+..+++||+||||+.........=..-+..+. +..+.+.|+||.. ...+.-++.
T Consensus 300 ~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGe 379 (1518)
T COG4889 300 AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGE 379 (1518)
T ss_pred cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhch
Confidence 2356899999999998543211100000000000 1123567888852 111111110
Q ss_pred -------------HhcCCceee-eeccCCccccccceeEEEEecCcccchHHHHHHHH-------HHhhc----------
Q 004518 486 -------------ALKRDHEFI-NTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLR-------EHVAD---------- 534 (747)
Q Consensus 486 -------------~~~~~~~~i-~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-------~~~~~---------- 534 (747)
.+..+..++ -.+.. ......+.+...-........-.-.++- .....
T Consensus 380 ef~rl~FgeAv~rdlLTDYKVmvlaVd~--~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ 457 (1518)
T COG4889 380 EFHRLGFGEAVERDLLTDYKVMVLAVDK--EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADT 457 (1518)
T ss_pred hhhcccHHHHHHhhhhccceEEEEEech--hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCc
Confidence 000011111 00000 0000000000000000111111111111 11100
Q ss_pred CCCCeEEEEecchhHHHHHHHHHHh---------------ccccceeccCCCCHHHHHHHHH---HHhcCCccEEEeeCC
Q 004518 535 NPEYKVLVFCTTAMVTRMVADLLGE---------------LKLNVREIHSRKPQSYRTRVSD---EFRKSKGLILVTSDV 596 (747)
Q Consensus 535 ~~~~k~LVF~~s~~~~~~l~~~L~~---------------~~~~v~~lh~~l~~~eR~~v~~---~F~~g~~~VLvaT~v 596 (747)
.+..+.|-||.++++...++..|.+ +.+.+-.+.|.|.-.+|.+.+. .|....++||---..
T Consensus 458 ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 458 APMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchh
Confidence 1112678899988888777766643 2456777789999999966654 345677888888888
Q ss_pred cccccCCCCccEEEEeCCCCChhhHHHhhccCCCCC-CcceEEEEe
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG-KEGQGILLL 641 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G-~~G~~~~l~ 641 (747)
++.|+|+|..+.||++++-.+..+.+|.+||..|.. ....+|+++
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 999999999999999999999999999999999974 122345444
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.51 E-value=3.7e-12 Score=135.11 Aligned_cols=108 Identities=12% Similarity=0.116 Sum_probs=91.1
Q ss_pred CCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCC-cc-EEEeeCCcccccCCCCccEEEEe
Q 004518 535 NPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSK-GL-ILVTSDVSARGVDYPDVTLVIQV 612 (747)
Q Consensus 535 ~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~-~~-VLvaT~v~~~GiDip~V~~VI~~ 612 (747)
....+.|||..-....+.+.-.|.+.|+++..|.|.|++..|...++.|.+.- +. +|++-.+.+.-+++-...+|++.
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 33458899988888888888889999999999999999999999999999864 34 45566777788999999999999
Q ss_pred CCCCChhhHHHhhccCCCCCC--cceEEEEeC
Q 004518 613 GLPSDREQYIHRLGRTGRKGK--EGQGILLLA 642 (747)
Q Consensus 613 d~p~s~~~y~Qr~GRagR~G~--~G~~~~l~s 642 (747)
|+-||++--.|...|..|.|+ +=.++.|+-
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i 747 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI 747 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeeh
Confidence 999999999999999999985 455666664
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.50 E-value=1.2e-13 Score=135.88 Aligned_cols=157 Identities=22% Similarity=0.223 Sum_probs=101.2
Q ss_pred CCcHHHHHHHHHHHC-------CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLLK-------GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~-------~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 373 (747)
+|+++|.+++..+.. ++.+++.++||||||.+++..+.... . +++|++|+..|+.|+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~-------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R-------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C-------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c-------------ceeEecCHHHHHHHHHH
Confidence 478999999988873 68999999999999998765444443 2 49999999999999999
Q ss_pred HHHHHhhhCCCceE---------EEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccc--------cccccCCCcc
Q 004518 374 EASTLLKYHPSIGV---------QVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTA--------GFATRLMGVK 436 (747)
Q Consensus 374 ~~~~l~~~~~~~~~---------~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~--------~~~~~L~~i~ 436 (747)
.+..+......... .....................+|+++|...|........ ........++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 88665432111100 000111111111223334557999999999987765321 1112345678
Q ss_pred EEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 437 ~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
+||+||||++....- +..++. .+...+|+||||+.
T Consensus 149 ~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 999999998775431 333444 55667999999975
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=1.1e-11 Score=147.05 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccc------cceeccCCCCHHHHHHHHHHHhc----CCccEE
Q 004518 522 PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKL------NVREIHSRKPQSYRTRVSDEFRK----SKGLIL 591 (747)
Q Consensus 522 ~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~------~v~~lh~~l~~~eR~~v~~~F~~----g~~~VL 591 (747)
..+..+|...+.. .++++|||+||+...+.+...+...++ ....+...-...++..+++.|.. |.-.||
T Consensus 508 ~~l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEE
Confidence 3344555555443 357999999999999999988876432 11233333223578889999964 456799
Q ss_pred Eee--CCcccccCCCC--ccEEEEeCCCC
Q 004518 592 VTS--DVSARGVDYPD--VTLVIQVGLPS 616 (747)
Q Consensus 592 vaT--~v~~~GiDip~--V~~VI~~d~p~ 616 (747)
+|+ ..++.|||+++ ++.||.+++|.
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCC
Confidence 999 78999999986 78999999985
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.46 E-value=1.3e-11 Score=141.58 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCc--cEEEeeCCccc
Q 004518 522 PLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG--LILVTSDVSAR 599 (747)
Q Consensus 522 ~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~--~VLvaT~v~~~ 599 (747)
..|.-+|++.. ..+.++|||.......+-|..+|+-.|+.+..|.|....++|...+++|...+. ..|++|...+.
T Consensus 1263 QtLAiLLqQLk--~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1263 QTLAILLQQLK--SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred HHHHHHHHHHH--hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 33444444432 235699999999999999999999999999999999999999999999998763 56889999999
Q ss_pred ccCCCCccEEEEeCCCCChhhHHHhhccCCCCCC--cceEEEEeCcc
Q 004518 600 GVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGK--EGQGILLLAPW 644 (747)
Q Consensus 600 GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~--~G~~~~l~s~~ 644 (747)
|||+-+.+.||+||..||+..-.|..-||.|.|+ .=+.|.|++.+
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999988888888888774 45677888763
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.46 E-value=5.7e-12 Score=147.46 Aligned_cols=317 Identities=21% Similarity=0.188 Sum_probs=181.0
Q ss_pred CCcHHHHHHHHHHHC--------CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 004518 301 KMTIVQEATLPVLLK--------GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~--------~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 372 (747)
.-..+|-+|+..+.. |-=+|-.|.||||||++ =.-|+..+.. ...+++..|-.-.|.|-.|.-
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd--------~~~g~RfsiALGLRTLTLQTG 478 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRD--------DKQGARFAIALGLRSLTLQTG 478 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCC--------CCCCceEEEEccccceeccch
Confidence 345789999877654 22378889999999996 3334444421 234667888888888888888
Q ss_pred HHHHHHhhhCCCceEEEEeCCcchHHHH----------------------------------------------------
Q 004518 373 TEASTLLKYHPSIGVQVVIGGTRLALEQ---------------------------------------------------- 400 (747)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~~gg~~~~~~~---------------------------------------------------- 400 (747)
+.+++-+... .-...+++|+.....-.
T Consensus 479 da~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~ 557 (1110)
T TIGR02562 479 HALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKE 557 (1110)
T ss_pred HHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhh
Confidence 8777655432 23444555554322111
Q ss_pred HHHhcCCCcEEEECchhHHHHHHccc--cccccCC--CccEEEEeCCccccCCCcHHHHHHHHHHC-CCCCeEEEEeccC
Q 004518 401 KRMQANPCQILVATPGRLRDHIENTA--GFATRLM--GVKVLVLDEADHLLDMGFRKDIEKIIAAV-PKQRQTLLFSATV 475 (747)
Q Consensus 401 ~~l~~~~~~IlV~Tpg~Ll~~l~~~~--~~~~~L~--~i~~vIiDEAh~ll~~~f~~~l~~il~~~-~~~~q~il~SATl 475 (747)
.++. ...|+|||+..++.....-. .....+- .-+.|||||+|..-...+ ..+..++.-+ .-...+++||||+
T Consensus 558 ~rll--~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 558 KTLL--AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred hhhh--cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0000 15799999999987763211 1111111 236899999997653222 2233333311 1245699999999
Q ss_pred ChHHHHHHH-HH----------hcCC--ceeeeeccCCc--cc------------c-------------ccceeEE-E-E
Q 004518 476 PEEVRQICH-IA----------LKRD--HEFINTVEEGS--EE------------T-------------HEQVRQM-H-L 513 (747)
Q Consensus 476 ~~~v~~l~~-~~----------~~~~--~~~i~~~~~~~--~~------------~-------------~~~i~~~-~-~ 513 (747)
|+.+...+. .| ...+ +..|.+..... .. . ....... . +
T Consensus 635 P~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~ 714 (1110)
T TIGR02562 635 PPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELL 714 (1110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEe
Confidence 988765432 11 1111 11111111000 00 0 0001111 1 1
Q ss_pred ecCcc-----cchHHHHHHHHHHhh--------cC--CCCe---EEEEecchhHHHHHHHHHHhc------cccceeccC
Q 004518 514 VAPLD-----LHFPLLYVLLREHVA--------DN--PEYK---VLVFCTTAMVTRMVADLLGEL------KLNVREIHS 569 (747)
Q Consensus 514 ~~~~~-----~k~~~l~~~l~~~~~--------~~--~~~k---~LVF~~s~~~~~~l~~~L~~~------~~~v~~lh~ 569 (747)
.++.. .....+...+.+.+. .. .+++ .||-+.++..+..++..|-.. .+.+.+||+
T Consensus 715 ~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHS 794 (1110)
T TIGR02562 715 SLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHA 794 (1110)
T ss_pred ecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecc
Confidence 11111 122223333322211 11 1222 267777788888888777543 355888999
Q ss_pred CCCHHHHHHHHHHH----------------------hc----CCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHH
Q 004518 570 RKPQSYRTRVSDEF----------------------RK----SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIH 623 (747)
Q Consensus 570 ~l~~~eR~~v~~~F----------------------~~----g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Q 623 (747)
..+...|..+.++. .+ +...|+|+|.+.+.|+|+ +.+++|-- |.+..+.+|
T Consensus 795 r~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ 871 (1110)
T TIGR02562 795 QDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQ 871 (1110)
T ss_pred cChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHH
Confidence 99877777665442 11 356899999999999999 77777643 567999999
Q ss_pred hhccCCCCCC
Q 004518 624 RLGRTGRKGK 633 (747)
Q Consensus 624 r~GRagR~G~ 633 (747)
++||+.|.|.
T Consensus 872 ~aGR~~R~~~ 881 (1110)
T TIGR02562 872 LAGRVNRHRL 881 (1110)
T ss_pred Hhhccccccc
Confidence 9999999874
No 157
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.46 E-value=1.7e-13 Score=115.98 Aligned_cols=81 Identities=41% Similarity=0.675 Sum_probs=77.0
Q ss_pred HHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCC
Q 004518 552 MVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRK 631 (747)
Q Consensus 552 ~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~ 631 (747)
.++..|...++.+..+||.++..+|..++..|.++...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 004518 632 G 632 (747)
Q Consensus 632 G 632 (747)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.43 E-value=6.9e-12 Score=137.83 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=93.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCc-cEEEeeCCcccccCCCCccEEEEeCCC
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG-LILVTSDVSARGVDYPDVTLVIQVGLP 615 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~-~VLvaT~v~~~GiDip~V~~VI~~d~p 615 (747)
+.++|+|+...+.+..+.++|...++..+.+.|.....+|..+...|+...+ -+|++|.+.+-||++...+.||+||..
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSD 1123 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSD 1123 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCC
Confidence 4588888888888888888888889999999999999999999999998665 468899999999999999999999999
Q ss_pred CChhhHHHhhccCCCCCCcce--EEEEeC
Q 004518 616 SDREQYIHRLGRTGRKGKEGQ--GILLLA 642 (747)
Q Consensus 616 ~s~~~y~Qr~GRagR~G~~G~--~~~l~s 642 (747)
|+|.--.|...||.|.|+.-. +|.+++
T Consensus 1124 WNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1124 WNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred CCcchhhHHHHHHHhccCccceeeeeecc
Confidence 999999999999999997544 455554
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.28 E-value=3e-10 Score=130.13 Aligned_cols=294 Identities=15% Similarity=0.157 Sum_probs=178.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcc
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTR 395 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~ 395 (747)
....+|.+|+|||||.+. +..+...++. +..++|+|..++.|+.+++..++...- +++....-..+..
T Consensus 49 ~~V~vVRSpMGTGKTtaL-i~wLk~~l~~---------~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~ 116 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTAL-IRWLKDALKN---------PDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYI 116 (824)
T ss_pred CCeEEEECCCCCCcHHHH-HHHHHHhccC---------CCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeecccccc
Confidence 456799999999999974 3344443221 234599999999999999998875421 1222111111111
Q ss_pred hHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCc------H-HHHHHHHHHCCCCCeE
Q 004518 396 LALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGF------R-KDIEKIIAAVPKQRQT 468 (747)
Q Consensus 396 ~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f------~-~~l~~il~~~~~~~q~ 468 (747)
+ .....+-+++..+.|.+.-. ..+.++++|||||+-..+..-| . ..+..+...+.....+
T Consensus 117 i-------~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~V 183 (824)
T PF02399_consen 117 I-------DGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTV 183 (824)
T ss_pred c-------cccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeE
Confidence 1 11125677777777765532 2356799999999987664211 1 2222233445566789
Q ss_pred EEEeccCChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEe---------------------------------c
Q 004518 469 LLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLV---------------------------------A 515 (747)
Q Consensus 469 il~SATl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~---------------------------------~ 515 (747)
|+|-||+....-+++...... ..+..+...........-..+... .
T Consensus 184 I~~DA~ln~~tvdFl~~~Rp~-~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (824)
T PF02399_consen 184 IVMDADLNDQTVDFLASCRPD-ENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATA 262 (824)
T ss_pred EEecCCCCHHHHHHHHHhCCC-CcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccc
Confidence 999999999998888875432 222222222111111000000000 0
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
........+...|...+.. +.++-||+.|...++.+++.......+|+.++|.-+..+. +. =++.+|+++|.
T Consensus 263 ~~~~~~~tF~~~L~~~L~~--gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~ 334 (824)
T PF02399_consen 263 AISNDETTFFSELLARLNA--GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTP 334 (824)
T ss_pred ccccchhhHHHHHHHHHhC--CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEec
Confidence 0001112334444443333 4588899999999999999999888999999887766522 22 25678999999
Q ss_pred CcccccCCCCc--cEEEEeCCC--C--ChhhHHHhhccCCCCCCcceEEEEeCcc
Q 004518 596 VSARGVDYPDV--TLVIQVGLP--S--DREQYIHRLGRTGRKGKEGQGILLLAPW 644 (747)
Q Consensus 596 v~~~GiDip~V--~~VI~~d~p--~--s~~~y~Qr~GRagR~G~~G~~~~l~s~~ 644 (747)
+...|+++... +-|+-|=-| . +..+..|++||.-... ....++.+...
T Consensus 335 ~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 335 VITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred eEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 99999999643 334444223 2 3456899999986554 66777777653
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.22 E-value=1.4e-09 Score=126.41 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=90.9
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHH---HHH
Q 004518 325 TGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL---EQK 401 (747)
Q Consensus 325 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~---~~~ 401 (747)
+|||||.+|+-.+-..+... ..+||++|...|+.|+.+.++..+. ...+.+++++.+... ...
T Consensus 169 ~GSGKTevyl~~i~~~l~~G-----------k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG-----------RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC-----------CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHH
Confidence 59999999877665555332 2399999999999999999987653 235666776655433 334
Q ss_pred HHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC--C-C---cHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 402 RMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD--M-G---FRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 402 ~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~--~-~---f~~~l~~il~~~~~~~q~il~SATl 475 (747)
.+..+...|+|+|-.-+ +..+.++.+|||||=|.-.- . . +..++..... ......+|+.|||.
T Consensus 235 ~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra-~~~~~~lvLgSaTP 303 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA-HQHGCALLIGGHAR 303 (665)
T ss_pred HHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH-HHcCCcEEEECCCC
Confidence 55667789999995433 36688999999999995431 1 1 2233333333 33567799999997
Q ss_pred ChHHHHH
Q 004518 476 PEEVRQI 482 (747)
Q Consensus 476 ~~~v~~l 482 (747)
.-+....
T Consensus 304 Sles~~~ 310 (665)
T PRK14873 304 TAEAQAL 310 (665)
T ss_pred CHHHHHH
Confidence 7665443
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.18 E-value=9.2e-10 Score=121.91 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhc--CCccE-EEeeCC
Q 004518 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK--SKGLI-LVTSDV 596 (747)
Q Consensus 520 k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~--g~~~V-LvaT~v 596 (747)
+...+..++...+. ....+++|...=.....-+...|.+.|..+..+||....++|..+++.|.. |...| |++-..
T Consensus 730 Ki~~~l~~le~i~~-~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 730 KIAMVLEILETILT-SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred HHHHHHHHHHHHhh-cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 44444455554422 233355555544444566678888999999999999999999999999974 43444 555566
Q ss_pred cccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEE
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~ 639 (747)
.+.|||+-+.+|+|..|+.|||+--.|..-|.-|.|+...+++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 7799999999999999999999999999999999998766554
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.15 E-value=1.1e-09 Score=126.52 Aligned_cols=322 Identities=18% Similarity=0.256 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCC
Q 004518 304 IVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP 383 (747)
Q Consensus 304 ~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 383 (747)
|+-.+.+-.+.-+..-|+.+.||-|||++..+|+.-..+..+ .|.++...--||..-++++..+..+.
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk-----------gVhvVTvNdYLA~RDae~m~~l~~~L- 148 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK-----------GVHVVTVNDYLARRDAEWMGPLYEFL- 148 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC-----------CcEEeeehHHhhhhCHHHHHHHHHHc-
Confidence 333444444555556799999999999999999765554333 27888888999999999999999987
Q ss_pred CceEEEEeCCcchHHHHHHHhcCCCcEEEECchhH-----HHHHHccccccccCCCccEEEEeCCccccC---------C
Q 004518 384 SIGVQVVIGGTRLALEQKRMQANPCQILVATPGRL-----RDHIENTAGFATRLMGVKVLVLDEADHLLD---------M 449 (747)
Q Consensus 384 ~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~L-----l~~l~~~~~~~~~L~~i~~vIiDEAh~ll~---------~ 449 (747)
++++++...+.......... .|||.++|...| .+-+..... ...+..+.+.|+||+|.++- .
T Consensus 149 GlsvG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~e-e~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQE-EKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred CCceeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHH-HhhhccCCeEEEcchhheeeeccccceeee
Confidence 89999999888655433333 289999997655 222211111 12245688999999997541 1
Q ss_pred C-------cHHHHHHHHHHCCCC--------CeEEEEecc-C-------------Ch-------HHHHH--HHHHhcCCc
Q 004518 450 G-------FRKDIEKIIAAVPKQ--------RQTLLFSAT-V-------------PE-------EVRQI--CHIALKRDH 491 (747)
Q Consensus 450 ~-------f~~~l~~il~~~~~~--------~q~il~SAT-l-------------~~-------~v~~l--~~~~~~~~~ 491 (747)
| ....+..+...+... .+.|.++-. + .. .+... +...+..+.
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 1 223333333222211 111111111 0 00 00000 000111111
Q ss_pred eeeeecc---------------------------------------------------------CC--ccc-------cc
Q 004518 492 EFINTVE---------------------------------------------------------EG--SEE-------TH 505 (747)
Q Consensus 492 ~~i~~~~---------------------------------------------------------~~--~~~-------~~ 505 (747)
.++.... .. ... ..
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 1110000 00 000 00
Q ss_pred cceeEEE---------------EecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCC
Q 004518 506 EQVRQMH---------------LVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSR 570 (747)
Q Consensus 506 ~~i~~~~---------------~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~ 570 (747)
..+.-.. +......|+..+..-+.....+ +.++||-..++...+.+++.|.+.+++-.+|...
T Consensus 385 Y~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~--gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 385 YGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEK--GQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred cCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhc--CCCEEEcCcceecchhHHHHHHhcCCCceeeccc
Confidence 0000000 1112233455554444444333 4599999999999999999999999998888887
Q ss_pred CCHHHHHHHHHHHhcCCccEEEeeCCcccccCCC---Ccc--------EEEEeCCCCChhhHHHhhccCCCCCCcceEEE
Q 004518 571 KPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYP---DVT--------LVIQVGLPSDREQYIHRLGRTGRKGKEGQGIL 639 (747)
Q Consensus 571 l~~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip---~V~--------~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~ 639 (747)
-...+-..+...-..| .|-|||++|+||-||. ++. +||--..-.|-.--.|.-||+||.|-+|.+..
T Consensus 463 ~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F 540 (822)
T COG0653 463 NHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRF 540 (822)
T ss_pred cHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhh
Confidence 7654444444333333 4889999999999994 221 45555555555555799999999999998887
Q ss_pred EeCcch
Q 004518 640 LLAPWE 645 (747)
Q Consensus 640 l~s~~e 645 (747)
+++-.|
T Consensus 541 ~lSleD 546 (822)
T COG0653 541 YLSLED 546 (822)
T ss_pred hhhhHH
Confidence 776544
No 163
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.07 E-value=6.5e-09 Score=127.54 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=101.7
Q ss_pred cchHHHHHHH-HHHhhcCCCCeEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcC--CccEEEeeC
Q 004518 519 LHFPLLYVLL-REHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKS--KGLILVTSD 595 (747)
Q Consensus 519 ~k~~~l~~~l-~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g--~~~VLvaT~ 595 (747)
.+...+..++ ..........++|||++-......+..+|...++.+..++|.++.+.|...+..|.++ ...++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 3455555566 3333222112899999999999999999999998999999999999999999999986 445677788
Q ss_pred CcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEE
Q 004518 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l 640 (747)
+++.|+|+-..++||+||..++++...|...|+.|.|+...+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999987665554
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.07 E-value=1.1e-09 Score=100.92 Aligned_cols=136 Identities=22% Similarity=0.267 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCc
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT 394 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~ 394 (747)
+++-.++-..+|+|||.-.+--++...++. +.++|||.|||.++..+.+.++.. .+.+....-+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~~ 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARMR 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS-
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC-----CcccCceeeec
Confidence 345568899999999996555455555443 345999999999999998877543 22222111110
Q ss_pred chHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC--cHHHHHHHHHHCCCCCeEEEEe
Q 004518 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG--FRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 395 ~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~--f~~~l~~il~~~~~~~q~il~S 472 (747)
...++.-|-++|.+.+...+.+. ..+.++++||+||||-+-... ++-.+... ... ....+|+||
T Consensus 68 --------~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mT 133 (148)
T PF07652_consen 68 --------THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMT 133 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEE
T ss_pred --------cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEe
Confidence 01234578899999988877764 346799999999999743222 33323222 222 245799999
Q ss_pred ccCChHH
Q 004518 473 ATVPEEV 479 (747)
Q Consensus 473 ATl~~~v 479 (747)
||.|-..
T Consensus 134 ATPPG~~ 140 (148)
T PF07652_consen 134 ATPPGSE 140 (148)
T ss_dssp SS-TT--
T ss_pred CCCCCCC
Confidence 9987553
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.93 E-value=7.8e-09 Score=110.18 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=87.9
Q ss_pred HHHHHHHHHH-------------CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 004518 305 VQEATLPVLL-------------KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQA 371 (747)
Q Consensus 305 iQ~~~i~~il-------------~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 371 (747)
+|.+++.+++ ..+.+|++.++|+|||++.+. ++..+........ ...+|||+|. .+..||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~~-----~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQRG-----EKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTSS------S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhcccccc-----ccceeEeecc-chhhhh
Confidence 4777776652 346799999999999997444 4444444332110 1139999999 777899
Q ss_pred HHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCc
Q 004518 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGF 451 (747)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f 451 (747)
..++.+++... .+.+..+.+....... ........+|+|+|+..+...........+.-.++++||+||+|.+-+..
T Consensus 74 ~~E~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~- 150 (299)
T PF00176_consen 74 KEEIEKWFDPD-SLRVIIYDGDSERRRL-SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD- 150 (299)
T ss_dssp HHHHHHHSGT--TS-EEEESSSCHHHHT-TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-
T ss_pred hhhhccccccc-cccccccccccccccc-cccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-
Confidence 99988886422 4555555554411111 11112347899999999881110000000111348899999999986443
Q ss_pred HHHHHHHHHHCCCCCeEEEEeccC
Q 004518 452 RKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 452 ~~~l~~il~~~~~~~q~il~SATl 475 (747)
......+..+. ....+++|||+
T Consensus 151 -s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 151 -SKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp -SHHHHHHHCCC-ECEEEEE-SS-
T ss_pred -ccccccccccc-cceEEeecccc
Confidence 22233333444 56678999996
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.93 E-value=3.8e-07 Score=110.91 Aligned_cols=314 Identities=15% Similarity=0.135 Sum_probs=164.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcch
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~ 396 (747)
+..+|+--||||||+... .+.+.+.+.. ..+.|+||+-+++|-.|+.+.+..+....... . ...+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~-~~A~~l~~~~--------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~----~-~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF-KLARLLLELP--------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND----P-KAEST 339 (962)
T ss_pred CceEEEeecCCchHHHHH-HHHHHHHhcc--------CCCeEEEEechHHHHHHHHHHHHHHHHhhhhc----c-cccCH
Confidence 468999999999999633 3334444431 23569999999999999999999886543111 1 22222
Q ss_pred HHHHHHHhc-CCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 397 ALEQKRMQA-NPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 397 ~~~~~~l~~-~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
.+.+.+.. ....|+|+|-.+|-..+...... ..-.+==+||+||||+- ++...-..+...++ +...++||.|+
T Consensus 340 -~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~-~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTP 413 (962)
T COG0610 340 -SELKELLEDGKGKIIVTTIQKFNKAVKEDELE-LLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTP 413 (962)
T ss_pred -HHHHHHHhcCCCcEEEEEecccchhhhccccc-ccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCc
Confidence 23333333 33589999999998777654111 11122336899999983 33333333334443 36799999997
Q ss_pred ChHHHHH-HHHHhcCCceeeeeccC--CccccccceeE-----EEEecCc------------------------------
Q 004518 476 PEEVRQI-CHIALKRDHEFINTVEE--GSEETHEQVRQ-----MHLVAPL------------------------------ 517 (747)
Q Consensus 476 ~~~v~~l-~~~~~~~~~~~i~~~~~--~~~~~~~~i~~-----~~~~~~~------------------------------ 517 (747)
--.-... ....+.. ......... ....+. .+.. .......
T Consensus 414 i~~~d~~tt~~~fg~-ylh~Y~i~daI~Dg~vl-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 491 (962)
T COG0610 414 IFKEDKDTTKDVFGD-YLHTYTITDAIRDGAVL-PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNL 491 (962)
T ss_pred cccccccchhhhhcc-eeEEEecchhhccCcee-eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhh
Confidence 3221111 0111110 000000000 000000 0000 0000000
Q ss_pred ------ccch-HHHHHHHHHHhh-cCCCCeEEEEecchhHHHHHHHHHHhccc-----------------------ccee
Q 004518 518 ------DLHF-PLLYVLLREHVA-DNPEYKVLVFCTTAMVTRMVADLLGELKL-----------------------NVRE 566 (747)
Q Consensus 518 ------~~k~-~~l~~~l~~~~~-~~~~~k~LVF~~s~~~~~~l~~~L~~~~~-----------------------~v~~ 566 (747)
..+. .....+...... ...+.++++.|+++..+..+.+....... ....
T Consensus 492 ~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 571 (962)
T COG0610 492 EFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQ 571 (962)
T ss_pred hHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhh
Confidence 0000 000111111111 23445777777777755555544332200 0000
Q ss_pred ccCCCCHHHHHHHHHH--HhcCCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCC---CcceEEEEe
Q 004518 567 IHSRKPQSYRTRVSDE--FRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG---KEGQGILLL 641 (747)
Q Consensus 567 lh~~l~~~eR~~v~~~--F~~g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G---~~G~~~~l~ 641 (747)
.|..... .......+ .+....++||.+|.+-+|.|.|.+..+. .|-|.--...+|.+-|+.|.- ++.-.++-|
T Consensus 572 ~~~~~~~-~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf 649 (962)
T COG0610 572 SHAKLKD-EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDF 649 (962)
T ss_pred hhHHHHH-HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEEC
Confidence 0222222 22333334 3456789999999999999999887554 788888889999999999963 233344444
Q ss_pred CcchHHHHHHhhh
Q 004518 642 APWEEFFLSTIKD 654 (747)
Q Consensus 642 s~~e~~~l~~l~~ 654 (747)
.......-+.++.
T Consensus 650 ~gl~e~l~~Al~~ 662 (962)
T COG0610 650 RGLKEALKKALKL 662 (962)
T ss_pred cchHHHHHHHHHH
Confidence 3333333334443
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.89 E-value=2.1e-08 Score=106.22 Aligned_cols=75 Identities=25% Similarity=0.250 Sum_probs=57.6
Q ss_pred CCCCCcHHHHHHH----HHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 004518 298 GYEKMTIVQEATL----PVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373 (747)
Q Consensus 298 g~~~~t~iQ~~~i----~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 373 (747)
.|+ ++|.|.+.+ ..+.++.++++.||||+|||++|++|++..+...+... .+.+++|+++|..+..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHH
Confidence 344 599999944 55667899999999999999999999998776433210 23469999999999888777
Q ss_pred HHHHH
Q 004518 374 EASTL 378 (747)
Q Consensus 374 ~~~~l 378 (747)
.++++
T Consensus 80 ~l~~~ 84 (289)
T smart00488 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 66654
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.89 E-value=2.1e-08 Score=106.22 Aligned_cols=75 Identities=25% Similarity=0.250 Sum_probs=57.6
Q ss_pred CCCCCcHHHHHHH----HHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 004518 298 GYEKMTIVQEATL----PVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373 (747)
Q Consensus 298 g~~~~t~iQ~~~i----~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 373 (747)
.|+ ++|.|.+.+ ..+.++.++++.||||+|||++|++|++..+...+... .+.+++|+++|..+..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHH
Confidence 344 599999944 55667899999999999999999999998776433210 23469999999999888777
Q ss_pred HHHHH
Q 004518 374 EASTL 378 (747)
Q Consensus 374 ~~~~l 378 (747)
.++++
T Consensus 80 ~l~~~ 84 (289)
T smart00489 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 66654
No 169
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.86 E-value=2.2e-07 Score=105.89 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc----------------------cccceeccCCCCHHHHHH
Q 004518 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL----------------------KLNVREIHSRKPQSYRTR 578 (747)
Q Consensus 521 ~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~----------------------~~~v~~lh~~l~~~eR~~ 578 (747)
+-+|..+|...- ..+-+.|||..+......+..+|... |...+.|.|.....+|..
T Consensus 1128 miLLleIL~mce--eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1128 MILLLEILRMCE--EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred eehHHHHHHHHH--HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 334455554322 23459999999999988888888542 456889999999999999
Q ss_pred HHHHHhcC----CccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEE
Q 004518 579 VSDEFRKS----KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILL 640 (747)
Q Consensus 579 v~~~F~~g----~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l 640 (747)
+...|.+- ....||+|.+.+-|||+-..+.||+||..|||.--.|-+=|+.|.|+..-||++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999863 245899999999999999999999999999999999999999999987666654
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.78 E-value=1.4e-07 Score=97.48 Aligned_cols=132 Identities=23% Similarity=0.283 Sum_probs=95.4
Q ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
-..|+++|..++=.+..|+ |+...||-|||++..+|+.-..+... .|-|++....||..-++++..+
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~-----------~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK-----------GVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS------------EEEEESSHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC-----------CcEEEeccHHHhhccHHHHHHH
Confidence 3468899998887777776 99999999999988888777665433 3889999999999999999999
Q ss_pred hhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHH-HHHHcccc---ccccCCCccEEEEeCCcccc
Q 004518 379 LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLR-DHIENTAG---FATRLMGVKVLVLDEADHLL 447 (747)
Q Consensus 379 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll-~~l~~~~~---~~~~L~~i~~vIiDEAh~ll 447 (747)
+.+. ++++.+...+.......... . ++|+++|...+. ++|..... .......+.++||||||.++
T Consensus 142 y~~L-Glsv~~~~~~~~~~~r~~~Y-~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFL-GLSVGIITSDMSSEERREAY-A--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHT-T--EEEEETTTEHHHHHHHH-H--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHh-hhccccCccccCHHHHHHHH-h--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9988 89999999988754322222 2 699999998774 44432110 11124688999999999766
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.49 E-value=8.3e-06 Score=91.63 Aligned_cols=130 Identities=13% Similarity=0.196 Sum_probs=99.6
Q ss_pred CeEEEEecchhHHHHHHHHHHhc------------------cccceeccCCCCHHHHHHHHHHHhcCC---ccEEEeeCC
Q 004518 538 YKVLVFCTTAMVTRMVADLLGEL------------------KLNVREIHSRKPQSYRTRVSDEFRKSK---GLILVTSDV 596 (747)
Q Consensus 538 ~k~LVF~~s~~~~~~l~~~L~~~------------------~~~v~~lh~~l~~~eR~~v~~~F~~g~---~~VLvaT~v 596 (747)
.++|||..+......+...|.+. +.+.+.+.|..+..+|.+.+.+|..-. -.+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 48899999998888888888764 234667899999999999999997632 257889999
Q ss_pred cccccCCCCccEEEEeCCCCChhhHHHhhccCCCCCCcceEEEEeCcchHH-----HHHHhhhCCCccCCCCCCCc
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEF-----FLSTIKDLPILKAPVPSVDP 667 (747)
Q Consensus 597 ~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~l~s~~e~~-----~l~~l~~~~i~~~~~~~~~~ 667 (747)
..-||++-+.+.+|.||..+++.--.|.+-|.-|.|+...|+++-.-.|.. |=.+|.+.......+...++
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np 875 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANP 875 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCc
Confidence 999999988889999999999999999999999999888888765433322 22345554444333444443
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.32 E-value=6e-06 Score=98.12 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=52.7
Q ss_pred CccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCC--Ccce--------EEEEeCcchHHHHHHhhh
Q 004518 587 KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG--KEGQ--------GILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 587 ~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G--~~G~--------~~~l~s~~e~~~l~~l~~ 654 (747)
....|++-.++..|-|-|+|=.+....-..|...-.|.+||..|.- +.|. -.++.+..+..|.+.|++
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHH
Confidence 5789999999999999999988888887788888899999999853 1221 223445666788887764
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.30 E-value=9.7e-06 Score=96.26 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=42.1
Q ss_pred CcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 408 CQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 408 ~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
..|+++||..|..-|..+ ...+..|..|||||||++....-...+..+....++..-+.+|||.
T Consensus 8 ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSds 71 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDN 71 (814)
T ss_pred CCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCC
Confidence 479999999997655544 2667899999999999976544333344444443444444444444
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.30 E-value=3.4e-05 Score=88.47 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=55.7
Q ss_pred CCccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCCCCC--CcceE-----------EEEeCcchHHHHHHh
Q 004518 586 SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKG--KEGQG-----------ILLLAPWEEFFLSTI 652 (747)
Q Consensus 586 g~~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRagR~G--~~G~~-----------~~l~s~~e~~~l~~l 652 (747)
.....|++--++-.|-|=|+|=.+.-.....|..+=.|.+||..|.. +.|+- .+++...+..|++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34678999999999999999999998888889999999999999953 34432 345666778888877
Q ss_pred hh
Q 004518 653 KD 654 (747)
Q Consensus 653 ~~ 654 (747)
++
T Consensus 562 qk 563 (985)
T COG3587 562 QK 563 (985)
T ss_pred HH
Confidence 64
No 175
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.09 E-value=1e-05 Score=78.64 Aligned_cols=103 Identities=26% Similarity=0.396 Sum_probs=71.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhccc--cceeccCCCCHHHHHHHHHHHhcCCccEEEeeC--CcccccCCCC--ccEE
Q 004518 536 PEYKVLVFCTTAMVTRMVADLLGELKL--NVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD--VSARGVDYPD--VTLV 609 (747)
Q Consensus 536 ~~~k~LVF~~s~~~~~~l~~~L~~~~~--~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~--v~~~GiDip~--V~~V 609 (747)
.++++|||++|+...+.+.+.+..... .+..+.. ....+..+++.|..+...||+++. .+..|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 357999999999999999999986532 2333443 355788999999999999999998 8999999996 8899
Q ss_pred EEeCCCCC-h-----------------------------hhHHHhhccCCCCCCcceEEEEe
Q 004518 610 IQVGLPSD-R-----------------------------EQYIHRLGRTGRKGKEGQGILLL 641 (747)
Q Consensus 610 I~~d~p~s-~-----------------------------~~y~Qr~GRagR~G~~G~~~~l~ 641 (747)
|..++|.. + ....|.+||+-|.... .|.+++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l 146 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD-YGVIIL 146 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT--EEEEEE
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC-cEEEEE
Confidence 99999841 1 1126889999998654 444443
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.09 E-value=1.7e-05 Score=81.02 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHCCCc-EEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 302 MTIVQEATLPVLLKGKD-VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 302 ~t~iQ~~~i~~il~~~d-vlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
+.+.|.+++..++.... .+|.||.|+|||.+ +..++..++.... ......+.++||++|+...+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67889999999999988 99999999999975 3344444421100 00112345699999999999999998777
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.99 E-value=3.2e-06 Score=98.35 Aligned_cols=133 Identities=23% Similarity=0.271 Sum_probs=93.3
Q ss_pred CCcHHHHHHHHHHHC-CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 301 KMTIVQEATLPVLLK-GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~-~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
.+.|+|.+++..+.+ ..++++.+|||+|||++|.+.+...+.. .++.++++++|-.+|+..-.+......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~---------~p~~kvvyIap~kalvker~~Dw~~r~ 997 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY---------YPGSKVVYIAPDKALVKERSDDWSKRD 997 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc---------CCCccEEEEcCCchhhcccccchhhhc
Confidence 445566666644332 3578999999999999999887766532 234679999999999987776555543
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD 448 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~ 448 (747)
. .+++++.-+.|..... .... ..++|+|+||+++-.+..+.... ..+.+++.+|+||.|++.+
T Consensus 998 ~-~~g~k~ie~tgd~~pd--~~~v--~~~~~~ittpek~dgi~Rsw~~r-~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 998 E-LPGIKVIELTGDVTPD--VKAV--READIVITTPEKWDGISRSWQTR-KYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred c-cCCceeEeccCccCCC--hhhe--ecCceEEcccccccCccccccch-hhhccccceeecccccccC
Confidence 3 2367776666665543 1222 23799999999998777643222 3467899999999998774
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.96 E-value=3.4e-05 Score=76.80 Aligned_cols=140 Identities=18% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
+...++.|..++.++++.+.+++.|+.|||||++++..+++.+.+... -+++|+-|..+....+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~---------~kiii~Rp~v~~~~~l------- 65 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY---------DKIIITRPPVEAGEDL------- 65 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--TT----------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC---------cEEEEEecCCCCcccc-------
Confidence 345688999999999998999999999999999988888888876332 2488888876542111
Q ss_pred hhhCCCceEEEE--------------eCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc
Q 004518 379 LKYHPSIGVQVV--------------IGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 379 ~~~~~~~~~~~~--------------~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh 444 (747)
.+.|+-.-.-. ++... ...+... ..|-+.++..+. +.. +. -.+||||||.
T Consensus 66 -GflpG~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~-~~Ie~~~~~~iR-----Grt----~~-~~~iIvDEaQ 129 (205)
T PF02562_consen 66 -GFLPGDLEEKMEPYLRPIYDALEELFGKEK----LEELIQN-GKIEIEPLAFIR-----GRT----FD-NAFIIVDEAQ 129 (205)
T ss_dssp --SS---------TTTHHHHHHHTTTS-TTC----HHHHHHT-TSEEEEEGGGGT-----T------B--SEEEEE-SGG
T ss_pred -ccCCCCHHHHHHHHHHHHHHHHHHHhChHh----HHHHhhc-CeEEEEehhhhc-----Ccc----cc-ceEEEEeccc
Confidence 11221100000 01111 1112111 355566554432 211 22 3799999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 445 ~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
.+. ...+..++..+..+.+++++--.
T Consensus 130 N~t----~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 130 NLT----PEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp G------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred CCC----HHHHHHHHcccCCCcEEEEecCc
Confidence 765 45677788888888888887654
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.90 E-value=6.3e-05 Score=75.15 Aligned_cols=126 Identities=20% Similarity=0.243 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
++++-|.+++..++.. +-++++|+.|+|||++ +..+...+... +.++++++||...+..+.+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~~~-- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA----------GKRVIGLAPTNKAAKELREKTG-- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC----------CCeEEEECCcHHHHHHHHHhhC--
Confidence 3688999999998754 3578899999999985 33344444432 2349999999988887665421
Q ss_pred hhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccc-ccccCCCccEEEEeCCccccCCCcHHHHHH
Q 004518 379 LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAG-FATRLMGVKVLVLDEADHLLDMGFRKDIEK 457 (747)
Q Consensus 379 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~-~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~ 457 (747)
+. ..|-..++........ -...+...++||||||-.+.. ..+..
T Consensus 68 ------~~-------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ 112 (196)
T PF13604_consen 68 ------IE-------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLAR 112 (196)
T ss_dssp ------S--------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHH
T ss_pred ------cc-------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHH
Confidence 11 1121111111100000 000145668999999986553 44666
Q ss_pred HHHHCCC-CCeEEEEecc
Q 004518 458 IIAAVPK-QRQTLLFSAT 474 (747)
Q Consensus 458 il~~~~~-~~q~il~SAT 474 (747)
++..++. ..++|++-=+
T Consensus 113 ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHhcCCEEEEECCc
Confidence 6777766 5667766644
No 180
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=97.79 E-value=3.4e-05 Score=62.08 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcccccccCcccHHHH-HHHHHHHcCCCCCCCCCh
Q 004518 685 KEAAYQAWLGYYNSNKKVGRDKYKLVEL-ANEYSRSMGLDNPPAIPK 730 (747)
Q Consensus 685 ~~~a~~s~l~~y~~~~~~~~~~~~~~~~-~~~~a~~~gl~~~p~i~~ 730 (747)
...||.||++.|.++ ...+.+|++.++ .+.+|++|||.++|+|++
T Consensus 20 A~~Af~SyvraY~~~-~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~~ 65 (65)
T PF13959_consen 20 AQKAFVSYVRAYASH-KELKDIFNVKKLDLGHLAKSFGLLEAPKVRE 65 (65)
T ss_pred HHHHHHHHHHHHHHH-hhhhhhCCcccCCHHHHHHHcCCCCCCCCCC
Confidence 468999999999988 455678888888 589999999999999974
No 181
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.76 E-value=0.00018 Score=72.29 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=91.4
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHC---CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 004518 281 FDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLK---GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 281 f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~---~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
|+......+++=.+.. ---+++.|.++...+.+ +.+.+.+.-+|.|||.+ ++|++..++..+. ..
T Consensus 5 w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~---------~L 72 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS---------RL 72 (229)
T ss_pred CCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC---------cE
Confidence 3333344555444332 23579999999988876 47899999999999998 8899888875442 23
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCC--cchH----HHHH----HHhcCCCcEEEECchhHHHHHHcc--
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG--TRLA----LEQK----RMQANPCQILVATPGRLRDHIENT-- 425 (747)
Q Consensus 358 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg--~~~~----~~~~----~l~~~~~~IlV~Tpg~Ll~~l~~~-- 425 (747)
+.+++| ++|..|+.+.+..-+...-+-.+..+-.. .... .... .... .-.|+++||+.++.+.-..
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~-~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMR-SGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHH-cCCEEEeChHHHHHHHHHHHH
Confidence 677777 57999998887765543222222222111 1111 1111 1212 2479999999875432111
Q ss_pred -----c-c-------ccccCCCccEEEEeCCccccC
Q 004518 426 -----A-G-------FATRLMGVKVLVLDEADHLLD 448 (747)
Q Consensus 426 -----~-~-------~~~~L~~i~~vIiDEAh~ll~ 448 (747)
. . ....+.....-|+||+|.++.
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 0 000123345579999998775
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.69 E-value=0.00056 Score=70.14 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=83.3
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHH-------
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT------- 369 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~------- 369 (747)
.++...+..|...+.++.++..+++.|++|+|||+..+..+++.+..... -+++|+-|+.+...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~---------~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV---------DRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCe---------eEEEEeCCCCCchhhhCcCCC
Confidence 35566788999999999999999999999999999877666666644321 23667767654321
Q ss_pred ----HHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHh-cCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc
Q 004518 370 ----QAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQ-ANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 370 ----Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh 444 (747)
.+.-++.-+.... . .+.+.. ....+. ...-.|-|+....+ . +. .| +-++||||||+
T Consensus 126 ~~~eK~~p~~~pi~D~L---~--~~~~~~----~~~~~~~~~~~~Iei~~l~ym----R-Gr----tl-~~~~vIvDEaq 186 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVL---V--RRLGAS----FMQYCLRPEIGKVEIAPFAYM----R-GR----TF-ENAVVILDEAQ 186 (262)
T ss_pred CHHHHHHHHHHHHHHHH---H--HHhChH----HHHHHHHhccCcEEEecHHHh----c-CC----cc-cCCEEEEechh
Confidence 1111111111100 0 001111 111111 11124555543322 2 21 12 23899999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 445 HLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 445 ~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
.+.- ..+..++..+..+.++|+.-
T Consensus 187 n~~~----~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 187 NVTA----AQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred cCCH----HHHHHHHhhcCCCCEEEEeC
Confidence 7653 56777888888888777654
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.62 E-value=0.00024 Score=79.19 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=50.7
Q ss_pred CCCcHHHHHHHHHHHCCCc-EEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLKGKD-VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~d-vlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
..+.+-|..|+....+.++ .++.||.|+|||.+... ++..+.+.+ -+|||++||.+.+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~~----------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQK----------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHcC----------CeEEEEcCchHHHHHHHHHhc
Confidence 3567889999999888854 78999999999997444 444444433 249999999999999888543
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.61 E-value=0.00041 Score=80.57 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhC
Q 004518 303 TIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYH 382 (747)
Q Consensus 303 t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 382 (747)
.++|+.++...+.++-+||.|+.|+|||++ +.-++..+.+... .....+++++||.-.|..+.+.+.......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 589999999999999999999999999986 2233333332111 113458999999999999888665433211
Q ss_pred CCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccccc---ccCCCccEEEEeCCccccCCCcHHHHHHHH
Q 004518 383 PSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFA---TRLMGVKVLVLDEADHLLDMGFRKDIEKII 459 (747)
Q Consensus 383 ~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~---~~L~~i~~vIiDEAh~ll~~~f~~~l~~il 459 (747)
.. ....... ...-..|-.+|+........|. .+.-.+++||||||-++- ...+..++
T Consensus 227 ---~~---------~~~~~~~----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll 286 (615)
T PRK10875 227 ---PL---------TDEQKKR----IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLI 286 (615)
T ss_pred ---cc---------chhhhhc----CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHH
Confidence 10 0000000 0111334334332221111111 122357899999997443 34566778
Q ss_pred HHCCCCCeEEEEecc
Q 004518 460 AAVPKQRQTLLFSAT 474 (747)
Q Consensus 460 ~~~~~~~q~il~SAT 474 (747)
..+++..++|++-=.
T Consensus 287 ~al~~~~rlIlvGD~ 301 (615)
T PRK10875 287 DALPPHARVIFLGDR 301 (615)
T ss_pred HhcccCCEEEEecch
Confidence 889998888887654
No 185
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.59 E-value=0.00081 Score=70.18 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHH----------CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 004518 301 KMTIVQEATLPVLL----------KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQ 370 (747)
Q Consensus 301 ~~t~iQ~~~i~~il----------~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q 370 (747)
.++..|.+++-.+. .....++-..||.||.-+..--|++..++.. .+.|.+..+-.|-..
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr----------~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR----------KRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC----------CceEEEECChhhhhH
Confidence 36788888775443 2356899999999998765555666666443 248999999999999
Q ss_pred HHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccC--------CC-ccEEEEe
Q 004518 371 AATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRL--------MG-VKVLVLD 441 (747)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L--------~~-i~~vIiD 441 (747)
..+.++.++.. .+.+..+..- +.. ....-.-.|+++|+..|...-.........| .+ =.+||+|
T Consensus 107 a~RDl~DIG~~--~i~v~~l~~~---~~~--~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfD 179 (303)
T PF13872_consen 107 AERDLRDIGAD--NIPVHPLNKF---KYG--DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFD 179 (303)
T ss_pred HHHHHHHhCCC--cccceechhh---ccC--cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEec
Confidence 98889887643 2222222110 000 0001124699999988876643211000111 11 2389999
Q ss_pred CCccccCCCc--------HHHHHHHHHHCCCCCeEEEEeccCChHHHHH
Q 004518 442 EADHLLDMGF--------RKDIEKIIAAVPKQRQTLLFSATVPEEVRQI 482 (747)
Q Consensus 442 EAh~ll~~~f--------~~~l~~il~~~~~~~q~il~SATl~~~v~~l 482 (747)
|||.+.+..- ...+..+...+|..+ ++.+|||--.+.+++
T Consensus 180 EcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~Nm 227 (303)
T PF13872_consen 180 ECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRNM 227 (303)
T ss_pred cchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCcee
Confidence 9999876432 244555666776555 999999976654443
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.58 E-value=0.00076 Score=80.41 Aligned_cols=131 Identities=21% Similarity=0.263 Sum_probs=79.1
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
..+++-|++++..+..++.+++.|+.|+|||++ +-.++..+...+. ...+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~~--------~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELGG--------LLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcCC--------CceEEEEeCchHHHHHHHHhc----
Confidence 468999999999999999999999999999985 2333343322210 134888999998887654321
Q ss_pred hhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHH
Q 004518 380 KYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459 (747)
Q Consensus 380 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il 459 (747)
+.. ..+ ..++... .++..... . .......++||||||+++.. ..+..++
T Consensus 389 ----g~~------a~T----ih~lL~~-------~~~~~~~~--~----~~~~~~~~llIvDEaSMvd~----~~~~~Ll 437 (720)
T TIGR01448 389 ----GLT------AST----IHRLLGY-------GPDTFRHN--H----LEDPIDCDLLIVDESSMMDT----WLALSLL 437 (720)
T ss_pred ----CCc------ccc----HHHHhhc-------cCCccchh--h----hhccccCCEEEEeccccCCH----HHHHHHH
Confidence 110 001 0111100 01100000 0 01123578999999997653 3456667
Q ss_pred HHCCCCCeEEEEecc
Q 004518 460 AAVPKQRQTLLFSAT 474 (747)
Q Consensus 460 ~~~~~~~q~il~SAT 474 (747)
..++...++|++--+
T Consensus 438 ~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 438 AALPDHARLLLVGDT 452 (720)
T ss_pred HhCCCCCEEEEECcc
Confidence 788888888887654
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.56 E-value=0.0008 Score=78.04 Aligned_cols=145 Identities=22% Similarity=0.257 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCC
Q 004518 304 IVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHP 383 (747)
Q Consensus 304 ~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 383 (747)
++|+.++..++.++-++|.|+.|+|||++ +..++..+.+.... ..+.++++++||--.|..+.+.+......
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~~~~~-- 219 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRKAVKN-- 219 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHhhhcc--
Confidence 78999999999999999999999999985 33333433322110 01245999999999998888766543221
Q ss_pred CceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccccc---ccCCCccEEEEeCCccccCCCcHHHHHHHHH
Q 004518 384 SIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFA---TRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460 (747)
Q Consensus 384 ~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~---~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~ 460 (747)
+... .... . ...+-..|-.+|+........|. .+...+++||||||=++. ...+..++.
T Consensus 220 -l~~~---------~~~~---~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~ 281 (586)
T TIGR01447 220 -LAAA---------EALI---A-ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLK 281 (586)
T ss_pred -cccc---------hhhh---h-ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHH
Confidence 1100 0000 0 01122445444443322111111 122368999999997443 345667788
Q ss_pred HCCCCCeEEEEecc
Q 004518 461 AVPKQRQTLLFSAT 474 (747)
Q Consensus 461 ~~~~~~q~il~SAT 474 (747)
.++...++|++-=.
T Consensus 282 al~~~~rlIlvGD~ 295 (586)
T TIGR01447 282 ALPPNTKLILLGDK 295 (586)
T ss_pred hcCCCCEEEEECCh
Confidence 88888888877654
No 188
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.45 E-value=0.00064 Score=76.15 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 004518 295 KDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374 (747)
Q Consensus 295 ~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 374 (747)
...++.++..-|..|+.++++..-.||+||.|+|||.+..- |+.++.+.. ...|||++|....+.|+++.
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~~---------~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQH---------AGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHhc---------CCceEEEcccchhHHHHHHH
Confidence 34577788999999999999999999999999999986433 334444331 23499999999999999998
Q ss_pred HHHH
Q 004518 375 ASTL 378 (747)
Q Consensus 375 ~~~l 378 (747)
+.+.
T Consensus 474 Ih~t 477 (935)
T KOG1802|consen 474 IHKT 477 (935)
T ss_pred HHhc
Confidence 8765
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.35 E-value=0.00085 Score=73.47 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=64.5
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchH
Q 004518 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA 397 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~ 397 (747)
.+||.|..|||||++ ++.++..+... ..+..++++++...|...+...+..... +
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~-------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQNS--------EEGKKVLYLCGNHPLRNKLREQLAKKYN--P-------------- 57 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhcc--------ccCCceEEEEecchHHHHHHHHHhhhcc--c--------------
Confidence 579999999999996 33344444111 1133489999999999888776654320 0
Q ss_pred HHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC-------cHHHHHHHHHH
Q 004518 398 LEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG-------FRKDIEKIIAA 461 (747)
Q Consensus 398 ~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~-------f~~~l~~il~~ 461 (747)
......+..+..+...+... ......+++|||||||+|.... ....+..++..
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~---~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSES---DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccc---cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00122234444443333200 1234678999999999998732 23556666655
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.27 E-value=0.0011 Score=55.22 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
+.-++|.|+.|||||.. ++.++..+...... . +..++|++||+.++.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~~-----~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTT-LAARIAELLAARAD-----P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHHhcC-----C-CCeEEEECCCHHHHHHHHHHH
Confidence 45566799999999976 44444555432110 1 234999999999999988877
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.24 E-value=0.0012 Score=76.59 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=47.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhcc-------ccceeccCCCCHHHHHHHHHHHhc--------CCccEEEeeCCcccc
Q 004518 536 PEYKVLVFCTTAMVTRMVADLLGELK-------LNVREIHSRKPQSYRTRVSDEFRK--------SKGLILVTSDVSARG 600 (747)
Q Consensus 536 ~~~k~LVF~~s~~~~~~l~~~L~~~~-------~~v~~lh~~l~~~eR~~v~~~F~~--------g~~~VLvaT~v~~~G 600 (747)
-+.++|||+|++...+.+.......+ ..- ++.+=-+..+=..++..|-+ |..-+.||---.++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 34579999999988777755554321 111 12222233333444555543 233445555667899
Q ss_pred cCCC--CccEEEEeCCCC
Q 004518 601 VDYP--DVTLVIQVGLPS 616 (747)
Q Consensus 601 iDip--~V~~VI~~d~p~ 616 (747)
+|+. +-+.||..|+|.
T Consensus 639 lDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCccccCCceeEEecCCC
Confidence 9996 467899999884
No 192
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.11 E-value=0.003 Score=66.87 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=87.5
Q ss_pred HCCCCCCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 004518 296 DAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT 373 (747)
Q Consensus 296 ~~g~~~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 373 (747)
-.|+..-.-.|.-|+.+++.. .-|.+.|+-|||||+.++.+.++..+..+.. -++||.-|+..+-..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y--------~KiiVtRp~vpvG~dI-- 292 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY--------RKIIVTRPTVPVGEDI-- 292 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh--------ceEEEecCCcCccccc--
Confidence 357777788899999998876 3477899999999998888888887765532 2488888876654322
Q ss_pred HHHHHhhhCCCceEEEEeCCcch-HHHHHHHhcCCCcEEEECchhHHHHHHccccccccCC-------CccEEEEeCCcc
Q 004518 374 EASTLLKYHPSIGVQVVIGGTRL-ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLM-------GVKVLVLDEADH 445 (747)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~gg~~~-~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~-------~i~~vIiDEAh~ 445 (747)
.|.|+..-.-...+... ......+... -=|+.+.|-..+....--...|. .=.+||||||+.
T Consensus 293 ------GfLPG~eEeKm~PWmq~i~DnLE~L~~~----~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQN 362 (436)
T COG1875 293 ------GFLPGTEEEKMGPWMQAIFDNLEVLFSP----NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQN 362 (436)
T ss_pred ------CcCCCchhhhccchHHHHHhHHHHHhcc----cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhc
Confidence 22222211111111100 0001111111 11122233333222110000111 125899999997
Q ss_pred ccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 446 LLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 446 ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
+. ...+..|+..+.+..+++++.
T Consensus 363 LT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 363 LT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred cC----HHHHHHHHHhccCCCEEEEcC
Confidence 76 456888899999888888765
No 193
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.94 E-value=0.0024 Score=68.33 Aligned_cols=125 Identities=20% Similarity=0.215 Sum_probs=73.7
Q ss_pred CcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhh
Q 004518 302 MTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKY 381 (747)
Q Consensus 302 ~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 381 (747)
+++-|.+++.. ....++|.|..|||||++.+--++..+...+. .+-++|+|++|+.+|..+.+++...+..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 66789999999999999855555554543321 1234999999999999999999887643
Q ss_pred CCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc
Q 004518 382 HPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 382 ~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh 444 (747)
..... ...............+.|+|-..+...+-+....... -.-.+-|+|+..
T Consensus 72 ~~~~~--------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-~~~~~~i~~~~~ 125 (315)
T PF00580_consen 72 EQQES--------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-IDPNFEILDEEE 125 (315)
T ss_dssp CCHCC--------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-SHTTTEEECHHH
T ss_pred ccccc--------cccccccccccccchheeehhhhhhhhhhhhhhhhhh-ccccceeecchh
Confidence 21000 0000111111122478899988776544332111111 112456777776
No 194
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.88 E-value=0.003 Score=69.50 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHH------HCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 004518 302 MTIVQEATLPVL------LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQA 371 (747)
Q Consensus 302 ~t~iQ~~~i~~i------l~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 371 (747)
+++-|+.++..+ ..+..+++.|+-|+|||+ ++-++...++.. +..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~---------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR---------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc---------cceEEEecchHHHHHhc
Confidence 567799988777 567889999999999998 444444444332 23599999998888766
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.86 E-value=0.0038 Score=57.55 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=12.6
Q ss_pred CCCcEEEEcCCCChhHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~ 333 (747)
+++.++|.|++|+|||.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3467899999999999853
No 196
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.023 Score=62.50 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCCccEEEEeCCccccC-CCcHHHHHHHHHHCCCC-CeEEEEeccCChH-HHHHHHHH
Q 004518 432 LMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQ-RQTLLFSATVPEE-VRQICHIA 486 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~-~q~il~SATl~~~-v~~l~~~~ 486 (747)
+.++++||||+|.++.. ......+..++.....+ ..++++|||.... +...+..+
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 35789999999998763 21345566666655433 4678999998643 44444444
No 197
>PRK08181 transposase; Validated
Probab=96.81 E-value=0.015 Score=60.79 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=19.0
Q ss_pred HHHCCCcEEEEcCCCChhHHHHH
Q 004518 312 VLLKGKDVLAKAKTGTGKTVAFL 334 (747)
Q Consensus 312 ~il~~~dvlv~a~TGsGKTl~~~ 334 (747)
++..+++++++||+|+|||....
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHH
Confidence 45577899999999999997533
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.77 E-value=0.0085 Score=56.36 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=41.5
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCc-cEEEeeCCcccccCCCC--ccEEEEeCCCC
Q 004518 564 VREIHSRKPQSYRTRVSDEFRKSKG-LILVTSDVSARGVDYPD--VTLVIQVGLPS 616 (747)
Q Consensus 564 v~~lh~~l~~~eR~~v~~~F~~g~~-~VLvaT~v~~~GiDip~--V~~VI~~d~p~ 616 (747)
...+.......+...+++.|..... .||++|..++.|||+|+ ++.||..++|.
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3445555666667889999987653 79999988999999997 57899888874
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=96.77 E-value=0.021 Score=61.68 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=41.1
Q ss_pred CCccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH
Q 004518 433 MGVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
.++++||||.|.++. +..+...+..+...+.+...+++++||...+....+..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 357899999999886 445677788888777788889999999876655555444
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.76 E-value=0.019 Score=57.21 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCccEEEEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH
Q 004518 433 MGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
+++++|+||=+-+... ......+..++....+..-.+++|||...+.......+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 4688999999986542 33566777888887777788999999976655444433
No 201
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.68 E-value=0.013 Score=70.31 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHHC-CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLK-GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~-~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 372 (747)
..+++-|++++..++. ++-++|.|+.|+|||++ +-.++.. ++.. +..+++++||--.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~-~~~~---------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREA-WEAA---------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHH-HHhC---------CCeEEEEeCcHHHHHHHH
Confidence 3589999999999887 46789999999999985 2223333 3221 345899999987776654
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.67 E-value=0.0084 Score=56.50 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=43.7
Q ss_pred HHHHHHHHhccc---cceeccCCCCHHHHHHHHHHHhcCCc---cEEEeeCC--cccccCCCC--ccEEEEeCCCC
Q 004518 551 RMVADLLGELKL---NVREIHSRKPQSYRTRVSDEFRKSKG---LILVTSDV--SARGVDYPD--VTLVIQVGLPS 616 (747)
Q Consensus 551 ~~l~~~L~~~~~---~v~~lh~~l~~~eR~~v~~~F~~g~~---~VLvaT~v--~~~GiDip~--V~~VI~~d~p~ 616 (747)
+.+++.+.+.+. ....+.......+...+++.|.+... .||+++.. ++.|||+|+ ++.||..++|.
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 444555544332 22333333334455778888887543 69999887 899999997 67899999884
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.024 Score=61.98 Aligned_cols=132 Identities=15% Similarity=0.141 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCc-HHHHHHHHHHHHHHhhhCCCceEEEEeCC
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPT-RELATQAATEASTLLKYHPSIGVQVVIGG 393 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Pt-r~La~Q~~~~~~~l~~~~~~~~~~~~~gg 393 (747)
.+..++++||||+|||+....-+...+.+.+. ....+|.+.+ |.-+.++...+.+. . ++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~--------~~V~lit~D~~R~ga~EqL~~~a~~---~-gv~------- 196 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA--------SKVALLTTDSYRIGGHEQLRIFGKI---L-GVP------- 196 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------CeEEEEecccccccHHHHHHHHHHH---c-CCc-------
Confidence 35689999999999999644433333322211 0113333332 33333333322222 1 222
Q ss_pred cchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC-cHHHHHHHHHHCCCCCeEEEEe
Q 004518 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG-FRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 394 ~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~~~~q~il~S 472 (747)
-..+.+++.+...+.. +.+.++|+||.+-+..... ....+..+.........++++|
T Consensus 197 ---------------~~~~~~~~~l~~~l~~-------l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLs 254 (374)
T PRK14722 197 ---------------VHAVKDGGDLQLALAE-------LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLN 254 (374)
T ss_pred ---------------eEecCCcccHHHHHHH-------hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEec
Confidence 2223455555444432 4567899999997653222 2333333323233345588899
Q ss_pred ccCChHH-HHHHHHHh
Q 004518 473 ATVPEEV-RQICHIAL 487 (747)
Q Consensus 473 ATl~~~v-~~l~~~~~ 487 (747)
||...+. ...++.+.
T Consensus 255 Ats~~~~l~evi~~f~ 270 (374)
T PRK14722 255 ATSHGDTLNEVVQAYR 270 (374)
T ss_pred CccChHHHHHHHHHHH
Confidence 9985544 44445443
No 204
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.04 Score=60.06 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=70.5
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEc-CcHH-HHHHHHHHHHHHhhhCCCceEEEEeCCc
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC-PTRE-LATQAATEASTLLKYHPSIGVQVVIGGT 394 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~-Ptr~-La~Q~~~~~~~l~~~~~~~~~~~~~gg~ 394 (747)
+.++++|+||+|||+....-+. .+...+. . ..+|.+ |.|. .+.|+......+ +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~Gk--------k-VglI~aDt~RiaAvEQLk~yae~l-----g---------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGKKK--------T-VGFITTDHSRIGTVQQLQDYVKTI-----G---------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHcCC--------c-EEEEecCCcchHHHHHHHHHhhhc-----C----------
Confidence 6789999999999996443333 2322211 1 134444 3443 333433222211 1
Q ss_pred chHHHHHHHhcCCCcEE-EECchhHHHHHHccccccccCCCccEEEEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 395 RLALEQKRMQANPCQIL-VATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 395 ~~~~~~~~l~~~~~~Il-V~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~S 472 (747)
+.++ +.+|..+.+.+..-. .-.++++|+||-+=+... ......+..++....+..-++.+|
T Consensus 297 -------------ipv~v~~d~~~L~~aL~~lk----~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLs 359 (436)
T PRK11889 297 -------------FEVIAVRDEAAMTRALTYFK----EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 359 (436)
T ss_pred -------------CcEEecCCHHHHHHHHHHHH----hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEEC
Confidence 2222 346666666664321 112579999999977553 224455666665555555577799
Q ss_pred ccCCh-HHHHHHHHHh
Q 004518 473 ATVPE-EVRQICHIAL 487 (747)
Q Consensus 473 ATl~~-~v~~l~~~~~ 487 (747)
||... ++...+..+-
T Consensus 360 ATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 360 ASMKSKDMIEIITNFK 375 (436)
T ss_pred CccChHHHHHHHHHhc
Confidence 98654 4455555543
No 205
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.0024 Score=71.13 Aligned_cols=146 Identities=20% Similarity=0.198 Sum_probs=72.3
Q ss_pred EEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhhCCCceEEEEeCCcchHHH
Q 004518 321 AKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST-LLKYHPSIGVQVVIGGTRLALE 399 (747)
Q Consensus 321 v~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~-l~~~~~~~~~~~~~gg~~~~~~ 399 (747)
..+.||||||++..- ++-++++.++.. .|+.|..-.........+.. +...+ -++-.+.+++..+.-.
T Consensus 2 f~matgsgkt~~ma~-lil~~y~kgyr~---------flffvnq~nilekt~~nftd~~s~ky-lf~e~i~~~d~~i~ik 70 (812)
T COG3421 2 FEMATGSGKTLVMAG-LILECYKKGYRN---------FLFFVNQANILEKTKLNFTDSVSSKY-LFSENININDENIEIK 70 (812)
T ss_pred cccccCCChhhHHHH-HHHHHHHhchhh---------EEEEecchhHHHHHHhhcccchhhhH-hhhhhhhcCCceeeee
Confidence 467899999997444 444566655421 56655543333222221110 00000 0011112222221110
Q ss_pred HHH---HhcCCCcEEEECchhHHHHHHcccccccc---CCCcc-EEEEeCCccccCCC------------cHHHHHHHHH
Q 004518 400 QKR---MQANPCQILVATPGRLRDHIENTAGFATR---LMGVK-VLVLDEADHLLDMG------------FRKDIEKIIA 460 (747)
Q Consensus 400 ~~~---l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~---L~~i~-~vIiDEAh~ll~~~------------f~~~l~~il~ 460 (747)
... -......|+++|...|...+.+.+.-... |.+.. +++-||||++.... .++.+..+.-
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 000 02344789999999997766543322222 33444 45679999975311 2222222223
Q ss_pred HCCCCCeEEEEeccCCh
Q 004518 461 AVPKQRQTLLFSATVPE 477 (747)
Q Consensus 461 ~~~~~~q~il~SATl~~ 477 (747)
..+++.-++.+|||.+.
T Consensus 151 ~~nkd~~~lef~at~~k 167 (812)
T COG3421 151 EQNKDNLLLEFSATIPK 167 (812)
T ss_pred hcCCCceeehhhhcCCc
Confidence 34556668899999984
No 206
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.52 E-value=0.013 Score=68.95 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHHHHCCC-cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLPVLLKGK-DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 299 ~~~~t~iQ~~~i~~il~~~-dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
+..+..-|++|+-.++.-+ -.+|.|-.|+|||+... .++..|+.. +.+||+++=|-.++..+.-.++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~~----------gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVAL----------GKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHHc----------CCeEEEEehhhHHHHHHHHHHhc
Confidence 3457888999997776654 47899999999998633 233444322 23499999998888777665554
Q ss_pred HhhhCCCceEEEEeCCc-chHHHHH----------------HHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEE
Q 004518 378 LLKYHPSIGVQVVIGGT-RLALEQK----------------RMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVL 440 (747)
Q Consensus 378 l~~~~~~~~~~~~~gg~-~~~~~~~----------------~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIi 440 (747)
+ ++.+ +..|.. ....+.+ ..+-+.+.|+.||=-.+.+-| +..+.++++||
T Consensus 736 ~-----~i~~-lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-------f~~R~FD~cIi 802 (1100)
T KOG1805|consen 736 F-----GIYI-LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-------FVNRQFDYCII 802 (1100)
T ss_pred c-----Ccce-eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-------hhccccCEEEE
Confidence 3 2221 112211 1111111 112244688888865554333 33457899999
Q ss_pred eCCccccC
Q 004518 441 DEADHLLD 448 (747)
Q Consensus 441 DEAh~ll~ 448 (747)
|||-.++.
T Consensus 803 DEASQI~l 810 (1100)
T KOG1805|consen 803 DEASQILL 810 (1100)
T ss_pred cccccccc
Confidence 99998663
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.49 E-value=0.026 Score=68.98 Aligned_cols=62 Identities=18% Similarity=0.029 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHHCCC-cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLKGK-DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~-dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 372 (747)
..+++-|.+++..++..+ .+++.|..|+|||++ +-.+...+... +..|+.++||--.|..+.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~----------G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA----------GYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc----------CCeEEEecCcHHHHHHHh
Confidence 368999999999998854 578999999999985 33333333221 345999999987775543
No 208
>PRK06526 transposase; Provisional
Probab=96.47 E-value=0.011 Score=61.46 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHHHCCCcEEEEcCCCChhHHHHHH
Q 004518 311 PVLLKGKDVLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 311 ~~il~~~dvlv~a~TGsGKTl~~~l 335 (747)
.++..+.+++++||+|+|||.....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH
Confidence 4566778999999999999986443
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.46 E-value=0.047 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHC--CCcEEEEcCCCChhHHH
Q 004518 310 LPVLLK--GKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 310 i~~il~--~~dvlv~a~TGsGKTl~ 332 (747)
...+.. ++.+++.|++|+|||..
T Consensus 11 ~~~~~~~~~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTL 35 (151)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHH
Confidence 344444 67899999999999984
No 210
>PRK04296 thymidine kinase; Provisional
Probab=96.43 E-value=0.0073 Score=60.00 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=23.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcC
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICP 363 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~P 363 (747)
.-.++.|++|+|||+..+- ++..+... +.+++|+-|
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~~----------g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEER----------GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHHc----------CCeEEEEec
Confidence 4578999999999986433 33333322 224777766
No 211
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.11 Score=58.27 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=38.6
Q ss_pred ECchhHHHHHHccccccccCCCccEEEEeCCcccc-CCCcHHHHHHHHHH-CCCCCeEEEEeccCCh-HHHHHHHHH
Q 004518 413 ATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEKIIAA-VPKQRQTLLFSATVPE-EVRQICHIA 486 (747)
Q Consensus 413 ~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll-~~~f~~~l~~il~~-~~~~~q~il~SATl~~-~v~~l~~~~ 486 (747)
.++..+...+.. +.++++||||-+-+.. +......+..++.. ..+....+++|||... .+......+
T Consensus 285 ~~~~~l~~~l~~-------~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ-------LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH-------hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 344445555542 3467999999997543 22234455555552 2334557889999865 444444444
No 212
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.28 E-value=0.29 Score=64.71 Aligned_cols=135 Identities=14% Similarity=0.190 Sum_probs=79.5
Q ss_pred CCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.+++-|++++..++.. +-++|.|..|+|||++ +-.+++ +++.. +..|++++||--.|..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~-~~~~~---------G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLH-LASEQ---------GYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHH-HHHhc---------CCeEEEEeCCHHHHHHHHHHhcch
Confidence 5889999999988875 6799999999999985 333333 33221 345999999998887766542211
Q ss_pred hhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHH
Q 004518 379 LKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKI 458 (747)
Q Consensus 379 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~i 458 (747)
. .++......+.. ..-..|...++ ... ..+..-++||||||-.+.. ..+..+
T Consensus 498 A--------------~Ti~~~l~~l~~---~~~~~tv~~fl---~~~----~~l~~~~vlIVDEAsMl~~----~~~~~L 549 (1960)
T TIGR02760 498 A--------------STFITWVKNLFN---DDQDHTVQGLL---DKS----SPFSNKDIFVVDEANKLSN----NELLKL 549 (1960)
T ss_pred h--------------hhHHHHHHhhcc---cccchhHHHhh---ccc----CCCCCCCEEEEECCCCCCH----HHHHHH
Confidence 0 000011111111 11112222232 111 2345678999999986553 335555
Q ss_pred HHHC-CCCCeEEEEecc
Q 004518 459 IAAV-PKQRQTLLFSAT 474 (747)
Q Consensus 459 l~~~-~~~~q~il~SAT 474 (747)
+... +...++|++.=+
T Consensus 550 l~~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 550 IDKAEQHNSKLILLNDS 566 (1960)
T ss_pred HHHHhhcCCEEEEEcCh
Confidence 5544 456788877665
No 213
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.26 E-value=0.057 Score=59.52 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=63.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHhccc------cceeccCCCCHHHHHHHHHHHh----cCCccEEEee--CCcccccCCC
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGELKL------NVREIHSRKPQSYRTRVSDEFR----KSKGLILVTS--DVSARGVDYP 604 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~~~~------~v~~lh~~l~~~eR~~v~~~F~----~g~~~VLvaT--~v~~~GiDip 604 (747)
+.++++|++++.-.+.+...-...|+ .-+.+-+.-+..+-.-++..++ +|+-.||++. .-.+.|||+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 45788899887666666555444432 1133334444444455555554 4666666654 4456899997
Q ss_pred Ccc--EEEEeCCCCCh------------------------------hhHHHhhccCCCCCCcceEEEEeC
Q 004518 605 DVT--LVIQVGLPSDR------------------------------EQYIHRLGRTGRKGKEGQGILLLA 642 (747)
Q Consensus 605 ~V~--~VI~~d~p~s~------------------------------~~y~Qr~GRagR~G~~G~~~~l~s 642 (747)
.-. .||++++|.-. ....|-.||+-|. +...+..++.
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~a 678 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFA 678 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEee
Confidence 655 89999999521 1125778888886 4556666653
No 214
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.25 E-value=0.016 Score=68.22 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHCC-CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLKG-KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~-~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
..+++.|..++..++.. ..++|.||.|+|||.+. ..++..+.+.+ .+||+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~g----------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKRG----------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC----------CCEEEEcCcHHHHHHHHHHHHh
Confidence 46789999999998876 67899999999999863 34444444322 2499999999999999988775
No 215
>PRK06921 hypothetical protein; Provisional
Probab=96.24 E-value=0.067 Score=56.08 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHc
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIK 343 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~ 343 (747)
.+..+++.|++|+|||.. +..+...+.+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhh
Confidence 357899999999999985 3334455543
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.07 Score=55.04 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=28.6
Q ss_pred CCCccEEEEeCCccccCCCcHH-HHHHHHHHCC-CCCeEEEEeccCChHHH
Q 004518 432 LMGVKVLVLDEADHLLDMGFRK-DIEKIIAAVP-KQRQTLLFSATVPEEVR 480 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~-~l~~il~~~~-~~~q~il~SATl~~~v~ 480 (747)
+.++++|||||++......+.. .+..|+.... ....+|+.|---+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 3468999999999876444433 3445555433 34556665554444443
No 217
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.12 E-value=0.012 Score=60.55 Aligned_cols=86 Identities=26% Similarity=0.276 Sum_probs=60.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCC-cchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCC
Q 004518 355 PILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG-TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLM 433 (747)
Q Consensus 355 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg-~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~ 433 (747)
.|.+|||+..--=|..+.+.++.+.. .+..+.-++.- .....+...+....+.|.|+||+||..+++.+ .+.++
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~l~ 200 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALSLS 200 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCCcc
Confidence 46699999876666666666665521 12233333433 25566666776677999999999999999877 36789
Q ss_pred CccEEEEeCCcc
Q 004518 434 GVKVLVLDEADH 445 (747)
Q Consensus 434 ~i~~vIiDEAh~ 445 (747)
++.+||||--|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998663
No 218
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.01 E-value=0.017 Score=69.45 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
..+++-|++++.. ....++|.|..|||||.+ ++.-+.+++.... -++-.+|+|+.|+.+|..+.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4589999999864 346799999999999997 4444455554321 123459999999999999999988874
No 219
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.99 E-value=0.13 Score=63.52 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHC-CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcC
Q 004518 285 SISALSLKGIKDAGYEKMTIVQEATLPVLLK-GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICP 363 (747)
Q Consensus 285 ~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~-~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~P 363 (747)
.+++..+......+ ..+++-|.+++..+.. ++-++|.|.-|+|||++ +-++...+-.. +..|+.++|
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~----------G~~V~g~Ap 433 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA----------GYRVVGGAL 433 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc----------CCeEEEEcC
Confidence 34455554443332 4689999999998754 57799999999999995 33343433222 345899999
Q ss_pred cHHHHHHHH
Q 004518 364 TRELATQAA 372 (747)
Q Consensus 364 tr~La~Q~~ 372 (747)
|--.|..+.
T Consensus 434 TgkAA~~L~ 442 (1102)
T PRK13826 434 AGKAAEGLE 442 (1102)
T ss_pred cHHHHHHHH
Confidence 987776553
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.98 E-value=0.028 Score=51.41 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChhHHH
Q 004518 316 GKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~ 332 (747)
+..+++.||+|+|||++
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46789999999999995
No 221
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.93 E-value=0.026 Score=64.51 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHC-----C----CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 004518 304 IVQEATLPVLLK-----G----KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATE 374 (747)
Q Consensus 304 ~iQ~~~i~~il~-----~----~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 374 (747)
|+|+-++-.++. + +.+++.-+=+.|||+.....++..++-. +..+..++++++++.-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-------g~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-------GEPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-------CccCceEEEEeCCHHHHHHHHHH
Confidence 678888777762 1 3578888899999985544444444322 12345699999999999999999
Q ss_pred HHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHH
Q 004518 375 ASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKD 454 (747)
Q Consensus 375 ~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~ 454 (747)
+..+....+.+...... . .. ....-.|.....+.++..+.....- ..=.+..++|+||+|.+.+......
T Consensus 74 ~~~~i~~~~~l~~~~~~---~----~~--~~~~~~i~~~~~~s~~~~~s~~~~~-~dG~~~~~~i~DE~h~~~~~~~~~~ 143 (477)
T PF03354_consen 74 AKKMIEASPELRKRKKP---K----II--KSNKKEIEFPKTGSFFKALSSDADS-LDGLNPSLAIFDELHAHKDDELYDA 143 (477)
T ss_pred HHHHHHhChhhccchhh---h----hh--hhhceEEEEcCCCcEEEEEecCCCC-ccCCCCceEEEeCCCCCCCHHHHHH
Confidence 99887765443311100 0 00 0011233333333333333222111 1112568999999999886545555
Q ss_pred HHHHHHHCCCCCeEEEEe
Q 004518 455 IEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 455 l~~il~~~~~~~q~il~S 472 (747)
+..-.... ++.+++++|
T Consensus 144 l~~g~~~r-~~pl~~~IS 160 (477)
T PF03354_consen 144 LESGMGAR-PNPLIIIIS 160 (477)
T ss_pred HHhhhccC-CCceEEEEe
Confidence 55444443 344454443
No 222
>PRK08727 hypothetical protein; Validated
Probab=95.89 E-value=0.049 Score=55.99 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=24.9
Q ss_pred CCccEEEEeCCccccCCC-cHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 433 MGVKVLVLDEADHLLDMG-FRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
.++++|||||+|.+.... ....+..++.........+++|+..++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p 137 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 456889999999887433 223344444443322323555555443
No 223
>PRK08116 hypothetical protein; Validated
Probab=95.80 E-value=0.12 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=19.9
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcC
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKS 344 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~ 344 (747)
..+++.|++|+|||... ..+.+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~ 141 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK 141 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc
Confidence 45999999999999863 3455666543
No 224
>PRK12377 putative replication protein; Provisional
Probab=95.73 E-value=0.091 Score=54.35 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHc
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIK 343 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~ 343 (747)
...+++.|++|+|||.. +..+.+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~ 127 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA 127 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 36799999999999985 3334455543
No 225
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.71 E-value=0.036 Score=57.81 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=58.6
Q ss_pred HHHHHHhcCCccEEEeeCCcccccCCCC--------ccEEEEeCCCCChhhHHHhhccCCCCCCc-ceEEEEeC---cch
Q 004518 578 RVSDEFRKSKGLILVTSDVSARGVDYPD--------VTLVIQVGLPSDREQYIHRLGRTGRKGKE-GQGILLLA---PWE 645 (747)
Q Consensus 578 ~v~~~F~~g~~~VLvaT~v~~~GiDip~--------V~~VI~~d~p~s~~~y~Qr~GRagR~G~~-G~~~~l~s---~~e 645 (747)
...+.|++|+..|+|.|+.+++||.+.. -++-|...+||+....+|..||+.|.|+. .-.|.++. +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5677999999999999999999998863 23456788999999999999999999963 33455443 356
Q ss_pred HHHHHHh
Q 004518 646 EFFLSTI 652 (747)
Q Consensus 646 ~~~l~~l 652 (747)
..|...+
T Consensus 132 ~Rfas~v 138 (278)
T PF13871_consen 132 RRFASTV 138 (278)
T ss_pred HHHHHHH
Confidence 6666544
No 226
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.70 E-value=0.22 Score=54.38 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCc-HHHHHHHHHHHHHHhhhCCCceEEEEeCC
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPT-RELATQAATEASTLLKYHPSIGVQVVIGG 393 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Pt-r~La~Q~~~~~~~l~~~~~~~~~~~~~gg 393 (747)
+++.+.+.||||-|||+...=.+....+..+. .-.+||++-| |.-|..+.....++. ++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~--------~kVaiITtDtYRIGA~EQLk~Ya~im----~vp------- 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK--------KKVAIITTDTYRIGAVEQLKTYADIM----GVP------- 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC--------cceEEEEeccchhhHHHHHHHHHHHh----CCc-------
Confidence 37889999999999998533222222211111 1125666554 455554444444432 222
Q ss_pred cchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccc-cCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHL-LDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 394 ~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~l-l~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
=.++-+|.-|...+.. +.++++|.||=|-+- .|......+..++.....---.+.+|
T Consensus 263 ---------------~~vv~~~~el~~ai~~-------l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvls 320 (407)
T COG1419 263 ---------------LEVVYSPKELAEAIEA-------LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLS 320 (407)
T ss_pred ---------------eEEecCHHHHHHHHHH-------hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEe
Confidence 2344556666655542 567789999977643 23345566777777665556678999
Q ss_pred ccCChH-HHHHHHHH
Q 004518 473 ATVPEE-VRQICHIA 486 (747)
Q Consensus 473 ATl~~~-v~~l~~~~ 486 (747)
||.... +.+++..+
T Consensus 321 at~K~~dlkei~~~f 335 (407)
T COG1419 321 ATTKYEDLKEIIKQF 335 (407)
T ss_pred cCcchHHHHHHHHHh
Confidence 998544 44455444
No 227
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.61 E-value=0.24 Score=51.88 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEc-CcH-HHHHHHHHHHHHHhhhCCCceEEEEeC
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC-PTR-ELATQAATEASTLLKYHPSIGVQVVIG 392 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~-Ptr-~La~Q~~~~~~~l~~~~~~~~~~~~~g 392 (747)
.+..++++|++|+|||+.+..-+.. +...+ ....+|.+ +.| ..+.|+......+ ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~---------~~v~~i~~D~~ri~~~~ql~~~~~~~-----~~------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGKK---------KTVGFITTDHSRIGTVQQLQDYVKTI-----GF------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHcC---------CeEEEEecCCCCHHHHHHHHHHhhhc-----Cc-------
Confidence 4478999999999999965543322 22111 11133444 333 4455554333221 11
Q ss_pred CcchHHHHHHHhcCCCcEEE-ECchhHHHHHHccccccccCCCccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEE
Q 004518 393 GTRLALEQKRMQANPCQILV-ATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLL 470 (747)
Q Consensus 393 g~~~~~~~~~l~~~~~~IlV-~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il 470 (747)
.+.. .++..+.+.+..- ....++++||||-+=+.. +......+..++....+...++.
T Consensus 132 ----------------~~~~~~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LV 191 (270)
T PRK06731 132 ----------------EVIAVRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 191 (270)
T ss_pred ----------------eEEecCCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEE
Confidence 2222 3445554444321 112367999999998764 23345556666666655556778
Q ss_pred EeccCCh-HHHHHHHHHh
Q 004518 471 FSATVPE-EVRQICHIAL 487 (747)
Q Consensus 471 ~SATl~~-~v~~l~~~~~ 487 (747)
+|||... +....++.+-
T Consensus 192 l~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 192 LSASMKSKDMIEIITNFK 209 (270)
T ss_pred EcCccCHHHHHHHHHHhC
Confidence 9999754 5556555543
No 228
>PHA02533 17 large terminase protein; Provisional
Probab=95.54 E-value=0.07 Score=61.37 Aligned_cols=149 Identities=14% Similarity=0.113 Sum_probs=85.1
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.|.|+|+.++..+..++-.++..+=..|||++....++..+...+ +..+++++|++.-|..+.+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~---------~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK---------DKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 478999999988766665667777778999976654544443221 23699999999999999988887665
Q ss_pred hCCCce-EEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHH
Q 004518 381 YHPSIG-VQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKII 459 (747)
Q Consensus 381 ~~~~~~-~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il 459 (747)
..|.+. ..+..... .... +.+++.|.+.|... +. ..=.+..++|+||+|.+.+ +.+.+..+.
T Consensus 130 ~~P~l~~~~i~~~~~----~~I~-l~NGS~I~~lss~~--~t--------~rG~~~~~liiDE~a~~~~--~~e~~~ai~ 192 (534)
T PHA02533 130 LLPDFLQPGIVEWNK----GSIE-LENGSKIGAYASSP--DA--------VRGNSFAMIYIDECAFIPN--FIDFWLAIQ 192 (534)
T ss_pred hCHHHhhcceeecCc----cEEE-eCCCCEEEEEeCCC--Cc--------cCCCCCceEEEeccccCCC--HHHHHHHHH
Confidence 544321 11111000 0000 12345555544221 00 1112567899999997764 233333343
Q ss_pred HHCCC--CCeEEEEeccC
Q 004518 460 AAVPK--QRQTLLFSATV 475 (747)
Q Consensus 460 ~~~~~--~~q~il~SATl 475 (747)
..+.. ..+++++|...
T Consensus 193 p~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 193 PVISSGRSSKIIITSTPN 210 (534)
T ss_pred HHHHcCCCceEEEEECCC
Confidence 33332 23455556553
No 229
>PRK06893 DNA replication initiation factor; Validated
Probab=95.46 E-value=0.063 Score=54.98 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCccEEEEeCCccccCC-CcHHHHHHHHHHCCC-CCeEEEEeccCChH
Q 004518 433 MGVKVLVLDEADHLLDM-GFRKDIEKIIAAVPK-QRQTLLFSATVPEE 478 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~-~f~~~l~~il~~~~~-~~q~il~SATl~~~ 478 (747)
.+.++|||||+|.+... .+...+..++..... ..+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 46789999999987632 233455555555543 34567888887554
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=95.43 E-value=0.091 Score=54.00 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCccEEEEeCCccccCC-CcHHHHHHHHHHCCCCCeEEEEeccCChH
Q 004518 433 MGVKVLVLDEADHLLDM-GFRKDIEKIIAAVPKQRQTLLFSATVPEE 478 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~-~f~~~l~~il~~~~~~~q~il~SATl~~~ 478 (747)
.++++||||++|.+... .....+..+++.+......++++++.++.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 45688999999987543 34455777777665544556777776543
No 231
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.40 E-value=0.099 Score=63.11 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
.+++++||||||+|... -.+.|.+++...+....+|+.+ |-+.
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t-t~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT-TEPD 161 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe-CChh
Confidence 57899999999998853 3445667777776666566554 5333
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.29 E-value=0.18 Score=49.37 Aligned_cols=48 Identities=23% Similarity=0.117 Sum_probs=29.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 319 VLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 319 vlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
++|.|++|+|||+..+-.+...+. . +..++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~----------g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-R----------GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-C----------CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999864444444432 2 122777654 45566666666554
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.27 E-value=0.13 Score=48.71 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCccEEEEeCCccccCCC----------cHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 433 MGVKVLVLDEADHLLDMG----------FRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~----------f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
....++||||++.+.... ....+..+.........+++++...+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 467899999999775321 235555555555544445555555443
No 234
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.26 E-value=0.07 Score=63.30 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=53.7
Q ss_pred CCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
..-..+++-|++++-. ...+++|.|..|||||.+ ++.-+..++..... .+-.+|+++.|+.+|..+.+++.
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~~------~~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARGQA------QPEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCCC------CHHHeEEEeccHHHHHHHHHHHH
Confidence 3345799999999853 345789999999999997 44444444433221 12359999999999999999887
Q ss_pred HHh
Q 004518 377 TLL 379 (747)
Q Consensus 377 ~l~ 379 (747)
...
T Consensus 263 ~~l 265 (684)
T PRK11054 263 ERL 265 (684)
T ss_pred Hhc
Confidence 654
No 235
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.23 E-value=0.99 Score=58.62 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 372 (747)
..+++.|++++..++.. +-++|.|..|+|||++ +-.++..+.... ...+..|+.++||--.|..+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~------~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP------ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh------cccCceEEEECCcHHHHHHHH
Confidence 46899999999999875 6799999999999985 222333321100 011345888999988876654
No 236
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.22 E-value=0.2 Score=57.32 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhcccc------ceeccCCCCHHHHHHHHHHHhc----CCccE
Q 004518 521 FPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLN------VREIHSRKPQSYRTRVSDEFRK----SKGLI 590 (747)
Q Consensus 521 ~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~~~~------v~~lh~~l~~~eR~~v~~~F~~----g~~~V 590 (747)
+..|..++...+..- +++++||+||+.-...+.+.+.+.|+- =.+++..... -..+++.|.. |.-.+
T Consensus 614 l~~l~~~~~nL~~~V-PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~Gai 690 (821)
T KOG1133|consen 614 IKDLGSSISNLSNAV-PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAI 690 (821)
T ss_pred HHHHHHHHHHHHhhC-CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeE
Confidence 344555555544433 479999999999888888888766541 1122222222 4566777653 55567
Q ss_pred EEee--CCcccccCCCC--ccEEEEeCCCCC------------------------hh--------hHHHhhccCCCCCCc
Q 004518 591 LVTS--DVSARGVDYPD--VTLVIQVGLPSD------------------------RE--------QYIHRLGRTGRKGKE 634 (747)
Q Consensus 591 LvaT--~v~~~GiDip~--V~~VI~~d~p~s------------------------~~--------~y~Qr~GRagR~G~~ 634 (747)
|+|. --++.|||+.+ .+.||.+|+|.. .+ ...|-+|||-|.-+.
T Consensus 691 LlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~D 770 (821)
T KOG1133|consen 691 LLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKD 770 (821)
T ss_pred EEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7765 56779999975 788999998841 11 225888999998766
Q ss_pred ceEEEEeC
Q 004518 635 GQGILLLA 642 (747)
Q Consensus 635 G~~~~l~s 642 (747)
-.+++|+.
T Consensus 771 YA~i~LlD 778 (821)
T KOG1133|consen 771 YASIYLLD 778 (821)
T ss_pred ceeEEEeh
Confidence 66666663
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.20 E-value=0.15 Score=53.13 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
+.++.++++.|++|+|||..+ .++.+.+.+.+ . -++.+++.+|+.++....
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~g----------~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLA-IAIGNELLKAG----------I-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hccCCcEEEECCCCCcHHHHH-HHHHHHHHHcC----------C-eEEEEEHHHHHHHHHHHH
Confidence 346789999999999999863 33445554332 2 345567777877765533
No 238
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.18 E-value=0.31 Score=57.39 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=86.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 004518 294 IKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQA 371 (747)
Q Consensus 294 l~~~g~~~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 371 (747)
+.....+....-|.+++..++.. +-+++.|.=|=|||.+.-+.+.... +... ...++|++|+.+.++.+
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~~~--------~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RLAG--------SVRIIVTAPTPANVQTL 277 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-HhcC--------CceEEEeCCCHHHHHHH
Confidence 34444444444555566666655 3689999999999997665552221 1110 34599999999999988
Q ss_pred HHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCc
Q 004518 372 ATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGF 451 (747)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f 451 (747)
.+.+.+-+... +++..+...... ...........|-+-+|.... . .-++||||||=.+-
T Consensus 278 f~fa~~~l~~l-g~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~------------~-~~DllvVDEAAaIp---- 336 (758)
T COG1444 278 FEFAGKGLEFL-GYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ------------E-EADLLVVDEAAAIP---- 336 (758)
T ss_pred HHHHHHhHHHh-CCcccccccccc---ceeeecCCceeEEeeCcchhc------------c-cCCEEEEehhhcCC----
Confidence 88776655543 333222221100 000011122345666665432 1 15789999997654
Q ss_pred HHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 452 RKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 452 ~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
...+.+++...+ .++||.|+.
T Consensus 337 lplL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 337 LPLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred hHHHHHHHhhcC----ceEEEeeec
Confidence 345556665543 688999973
No 239
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.10 E-value=0.28 Score=53.00 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHc
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIK 343 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~ 343 (747)
.+.++++.|+||+|||... ..+.+.++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~ 209 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD 209 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 3578999999999999853 334455543
No 240
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.06 E-value=0.15 Score=52.43 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=26.3
Q ss_pred CccEEEEeCCccccCC-CcHHHHHHHHHHCCC-CCeEEEEeccCChH
Q 004518 434 GVKVLVLDEADHLLDM-GFRKDIEKIIAAVPK-QRQTLLFSATVPEE 478 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~-~f~~~l~~il~~~~~-~~q~il~SATl~~~ 478 (747)
++++|||||+|.+... .....+..++..+.. ....+++|++.++.
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChH
Confidence 3578999999988642 244445555554432 22245566665543
No 241
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.00 E-value=0.089 Score=63.31 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
..+++-|++++.. ....++|.|..|||||.+ ++.-+.+++.... -++-.+|+|+-|+.+|.++.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3589999999864 346799999999999997 3444445543221 123359999999999999999998875
Q ss_pred h
Q 004518 380 K 380 (747)
Q Consensus 380 ~ 380 (747)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 4
No 242
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.00 E-value=0.04 Score=63.88 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHH-HHHH
Q 004518 301 KMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAAT-EAST 377 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~-~~~~ 377 (747)
..+|+|.+++.++... +.|+++.++-+|||.+.+ -++-..+...+ .-+|++.||.++|..... .+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~-n~~g~~i~~~P---------~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLL-NWIGYSIDQDP---------GPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHH-hhceEEEEeCC---------CCEEEEEEcHHHHHHHHHHHHHH
Confidence 4689999999988765 679999999999999533 33333322221 239999999999999875 7777
Q ss_pred HhhhCCCceEEEEe---CCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcccc
Q 004518 378 LLKYHPSIGVQVVI---GGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL 447 (747)
Q Consensus 378 l~~~~~~~~~~~~~---gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll 447 (747)
+....|.+.-.+.- .........+.+ .+ ..|.++....-. .+.-..++++++||+|...
T Consensus 86 mi~~sp~l~~~~~~~~~~~~~~t~~~k~f-~g-g~l~~~ga~S~~---------~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSKSRDSGNTILYKRF-PG-GFLYLVGANSPS---------NLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCHHHHHHhCchhhcccCCchhheec-CC-CEEEEEeCCCCc---------ccccCCcCEEEEechhhcc
Confidence 77766554422211 001111111111 12 234444321110 0122468899999999885
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.3 Score=53.23 Aligned_cols=128 Identities=18% Similarity=0.226 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEc-CcHHHH-HHHHHHHHHHhhhCCCceEEEEeCC
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC-PTRELA-TQAATEASTLLKYHPSIGVQVVIGG 393 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~-Ptr~La-~Q~~~~~~~l~~~~~~~~~~~~~gg 393 (747)
++.++++||||+|||+...--+.. +...+. . ..+|.+ |.|.-| .|+......+ ++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~--------~-V~lItaDtyR~gAveQLk~yae~l-----gvpv------ 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR--------T-VGFITTDTFRSGAVEQFQGYADKL-----DVEL------ 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC--------e-EEEEeCCccCccHHHHHHHHhhcC-----CCCE------
Confidence 567899999999999864333322 222211 1 134444 444433 3433322211 1111
Q ss_pred cchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 394 ~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
.+..+|..|.+.+..- ....++++|+||=|-+.- +......+..+.....+..-++.+|
T Consensus 265 ----------------~~~~dp~dL~~al~~l----~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLs 324 (407)
T PRK12726 265 ----------------IVATSPAELEEAVQYM----TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFS 324 (407)
T ss_pred ----------------EecCCHHHHHHHHHHH----HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECC
Confidence 1123555555554321 112457889999887643 2234455555665555555567788
Q ss_pred ccCCh-HHHHHHH
Q 004518 473 ATVPE-EVRQICH 484 (747)
Q Consensus 473 ATl~~-~v~~l~~ 484 (747)
||... ++..++.
T Consensus 325 ag~~~~d~~~i~~ 337 (407)
T PRK12726 325 SGMKSADVMTILP 337 (407)
T ss_pred CcccHHHHHHHHH
Confidence 87654 3334333
No 244
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.99 E-value=0.14 Score=58.20 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=25.8
Q ss_pred CCccEEEEeCCccccCCC-cHHHHHHHHHHCCC-CCeEEEEeccCCh
Q 004518 433 MGVKVLVLDEADHLLDMG-FRKDIEKIIAAVPK-QRQTLLFSATVPE 477 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~~-~~q~il~SATl~~ 477 (747)
.++++|||||+|.+.... ....+..++..+.. ..+ ++++++.++
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~-iiits~~~p 255 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ-IVLTSDRPP 255 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc-EEEECCCCH
Confidence 467899999999876432 23344455544433 344 455665544
No 245
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.98 E-value=0.14 Score=52.02 Aligned_cols=43 Identities=12% Similarity=0.273 Sum_probs=24.7
Q ss_pred ccEEEEeCCccccCCC-cHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 435 VKVLVLDEADHLLDMG-FRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~-f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
..+|||||+|.+.... ....+..++.........+++|++.++
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 4689999999876432 244555555443222224566666443
No 246
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.91 E-value=0.012 Score=57.30 Aligned_cols=124 Identities=21% Similarity=0.266 Sum_probs=52.0
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHH
Q 004518 320 LAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE 399 (747)
Q Consensus 320 lv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~ 399 (747)
|+.|+=|-|||.+.-+.+...+ ... ...|+|++|+.+.++.+++.+...++.. +++... ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-~~~---------~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~----~~~~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-QKG---------KIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEK----KKRIGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-S--------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hhc---------CceEEEecCCHHHHHHHHHHHHhhcccc-cccccc----cccccc
Confidence 5789999999996444332221 111 1359999999999888877655433321 111100 000000
Q ss_pred HHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 400 QKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 400 ~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
...+..+...|-+..|..+... ....+++|||||=.+. ...+.+++...+ .++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 0111122356777777766322 1235899999997654 234444443333 567788873
No 247
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.81 E-value=0.066 Score=63.78 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.+++-|++++.. ....++|.|..|||||.+. +.-+.+++.... .++-++|+|+.|+.+|.++.+++..++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL-~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhcC------CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 378899999865 3467889999999999974 444444443211 1233599999999999999998887653
No 248
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.72 E-value=0.26 Score=55.75 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCCccEEEEeCCccccCC-CcHHHHHHHHHHCCCCCeEEEEeccCChH
Q 004518 432 LMGVKVLVLDEADHLLDM-GFRKDIEKIIAAVPKQRQTLLFSATVPEE 478 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~-~f~~~l~~il~~~~~~~q~il~SATl~~~ 478 (747)
+.++++|||||+|.+... ...+.+..++..+......+++|+..++.
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~ 251 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPE 251 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 356789999999987642 23445555555544333344555555443
No 249
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.72 E-value=0.12 Score=60.70 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=70.6
Q ss_pred eEEEEecchhHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCc-c-EEEeeCCcccccCCCCccEEEEeCCCC
Q 004518 539 KVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKG-L-ILVTSDVSARGVDYPDVTLVIQVGLPS 616 (747)
Q Consensus 539 k~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~-~-VLvaT~v~~~GiDip~V~~VI~~d~p~ 616 (747)
++|||+.-..-+.-+...|...++.+..+.|.|+...|.+++..|..+.. . .+++..+...|+++-...+|+..|+-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 56666665555555555555566777777788888888888888875432 2 345566667788888888888888888
Q ss_pred ChhhHHHhhccCCCCCCcceEEE
Q 004518 617 DREQYIHRLGRTGRKGKEGQGIL 639 (747)
Q Consensus 617 s~~~y~Qr~GRagR~G~~G~~~~ 639 (747)
|+..--|.+-|+.|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 88888888888888876554444
No 250
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=0.51 Score=52.22 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=32.8
Q ss_pred CccEEEEeCCcccc-CCCcHHHHHHHHHHCC---CCCeEEEEeccCCh-HHHHHHHHH
Q 004518 434 GVKVLVLDEADHLL-DMGFRKDIEKIIAAVP---KQRQTLLFSATVPE-EVRQICHIA 486 (747)
Q Consensus 434 ~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~---~~~q~il~SATl~~-~v~~l~~~~ 486 (747)
++++||||=+-+.. +......+..++.... +...++++|||... .+......+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 57889999776553 3334455566665542 23467889999876 444444444
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.50 E-value=0.21 Score=55.90 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=25.4
Q ss_pred CccEEEEeCCccccCCC-cHHHHHHHHHHCC-CCCeEEEEeccCChH
Q 004518 434 GVKVLVLDEADHLLDMG-FRKDIEKIIAAVP-KQRQTLLFSATVPEE 478 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~-~~~q~il~SATl~~~ 478 (747)
++++|||||+|.+.... ....+..++..+. ...++ ++|++.++.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~i-iits~~~p~ 244 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQI-VLTSDRPPK 244 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCE-EEecCCCHH
Confidence 56899999999876532 2233444444432 33444 556665443
No 252
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.34 E-value=0.076 Score=55.32 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=33.8
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
...+.+||+||||.|.. .-+..+.+.+...+....+++....+..
T Consensus 127 ~~~fKiiIlDEcdsmts-daq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTS-DAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCcceEEEEechhhhhH-HHHHHHHHHHhccccceEEEEEcCChhh
Confidence 45679999999999874 3456677777777777778887776543
No 253
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.34 E-value=0.15 Score=60.96 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 302 MTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 302 ~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
+++-|++++.. ....++|.|..|||||.+ ++.-+.++++... ..+..+|+|+.|+..|.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889998864 456899999999999997 4444444443211 1234599999999999999998887653
No 254
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.33 E-value=0.24 Score=63.20 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHH--HHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 004518 301 KMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAF--LLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~--~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 372 (747)
.+++-|++++..++.. +.++|.|..|+|||++. ++-++..+.+. .+..++.++||--.|..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~---------~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES---------ERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc---------cCceEEEEechHHHHHHHH
Confidence 6899999999999854 78999999999999962 12222222211 1345888999988877664
No 255
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.32 E-value=0.25 Score=52.08 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=32.9
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKS-PPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~-~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
.+++++|+|+.|||.+. ++..+. +.........-+.+.|-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 58999999999999842 333322 221111112235567777877666666664443
No 256
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.63 Score=51.80 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCc-HHHHHHHHHHHHHHhhhCCCceEEEEeCC
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPT-RELATQAATEASTLLKYHPSIGVQVVIGG 393 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Pt-r~La~Q~~~~~~~l~~~~~~~~~~~~~gg 393 (747)
.+..+.+.|+||+|||+....-+-..+...+. ....+|.+.+ |.-+.++...+.++. ++.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~--------~~v~~i~~d~~rigalEQL~~~a~il----Gvp~~~---- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA--------DKVALLTTDSYRIGGHEQLRIYGKLL----GVSVRS---- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------CeEEEEecCCcchhHHHHHHHHHHHc----CCceec----
Confidence 45678999999999999543332222222111 1124555555 343444433333332 222211
Q ss_pred cchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 394 TRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 394 ~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~S 472 (747)
+.++..+...+. .+.+.++++||.+-+.-. ......+..+.....+...++++|
T Consensus 254 ------------------v~~~~dl~~al~-------~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~ 308 (420)
T PRK14721 254 ------------------IKDIADLQLMLH-------ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLN 308 (420)
T ss_pred ------------------CCCHHHHHHHHH-------HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEc
Confidence 222333322222 245678899998743221 112333444333233445678899
Q ss_pred ccCChH-HHHHHHHH
Q 004518 473 ATVPEE-VRQICHIA 486 (747)
Q Consensus 473 ATl~~~-v~~l~~~~ 486 (747)
||.... +.+....+
T Consensus 309 at~~~~~~~~~~~~f 323 (420)
T PRK14721 309 ATSSGDTLDEVISAY 323 (420)
T ss_pred CCCCHHHHHHHHHHh
Confidence 997544 44444444
No 257
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.28 E-value=0.84 Score=53.12 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=76.1
Q ss_pred HCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhC------CCc-e
Q 004518 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYH------PSI-G 386 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~------~~~-~ 386 (747)
++.+-.++.+|=|.|||.+..+.++..+.. .+.+|+|++|...-+.++.+.++..+... +.. .
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~ 254 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFK 254 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCce
Confidence 345668889999999999754444333321 13459999999999999998888776522 111 1
Q ss_pred EEEEeCCcc-hHHHH-HHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCC-
Q 004518 387 VQVVIGGTR-LALEQ-KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVP- 463 (747)
Q Consensus 387 ~~~~~gg~~-~~~~~-~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~- 463 (747)
+..+.+|.. ..... .....+...|.+++-. .+ . ..-.+++++|||||.-+.. ..+..++..+.
T Consensus 255 iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~--s-~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~ 320 (752)
T PHA03333 255 IVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PN--A-ARGQNPDLVIVDEAAFVNP----GALLSVLPLMAV 320 (752)
T ss_pred EEEeeCCeeEEEEecCcccccCcceeEEeccc-------CC--C-cCCCCCCEEEEECcccCCH----HHHHHHHHHHcc
Confidence 111222210 00000 0000011233332211 01 1 1223578999999998775 34444554444
Q ss_pred CCCeEEEEeccCC
Q 004518 464 KQRQTLLFSATVP 476 (747)
Q Consensus 464 ~~~q~il~SATl~ 476 (747)
...+++++|.+..
T Consensus 321 ~~~k~IiISS~~~ 333 (752)
T PHA03333 321 KGTKQIHISSPVD 333 (752)
T ss_pred CCCceEEEeCCCC
Confidence 4567788888763
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.27 E-value=0.76 Score=51.59 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=36.0
Q ss_pred CccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHH
Q 004518 434 GVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHI 485 (747)
Q Consensus 434 ~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~ 485 (747)
..++||||.|-++. +......+..+.....+..-++.++||...+..+.+..
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 34899999996554 23355666777777777777889999887655554444
No 259
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.48 Score=55.93 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
.+++++||||+|.|.... .+.+.+++..-+....+|+ ++|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FIL-aTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFIL-ATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEE-EEC
Confidence 367899999999887543 3445556666555554444 444
No 260
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.5 Score=53.70 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=29.6
Q ss_pred CCCccEEEEeCCccccCC-CcHHHHHHHHHHCCCCCeEEEEeccCC-hHHHHHHHHH
Q 004518 432 LMGVKVLVLDEADHLLDM-GFRKDIEKIIAAVPKQRQTLLFSATVP-EEVRQICHIA 486 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~-~f~~~l~~il~~~~~~~q~il~SATl~-~~v~~l~~~~ 486 (747)
+.++++||||.+-..... .....+..+... .....+++++++.. ..+...++.+
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHHH
Confidence 346799999999765321 122233333222 23455788888875 3444444443
No 261
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.29 Score=56.85 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=25.9
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
..++++||||+|+|....+ +.+.+++..-+....+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 4678999999999875443 34555565555566555554
No 262
>PRK09183 transposase/IS protein; Provisional
Probab=94.17 E-value=0.39 Score=50.13 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHCCCcEEEEcCCCChhHHHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~l 335 (747)
+..+.++++.||+|+|||.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH
Confidence 56688999999999999985443
No 263
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.17 E-value=0.28 Score=56.83 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCCccEEEEeCCccccCCC-cHHHHHHHHHHCCC-CCeEEEEeccCChHHH
Q 004518 432 LMGVKVLVLDEADHLLDMG-FRKDIEKIIAAVPK-QRQTLLFSATVPEEVR 480 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~~-~~q~il~SATl~~~v~ 480 (747)
+.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..+.++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3467999999999886533 23445556655544 4556654444444443
No 264
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.16 E-value=0.11 Score=62.95 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCC--------CCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCce
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP--------PVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIG 386 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~--------~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~ 386 (747)
.|+++++....|+|||.+-+.-.+..+-+.. ........+|. .|||+| -++..||.+++..-... .+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tga-TLII~P-~aIl~QW~~EI~kH~~~--~lK 448 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGA-TLIICP-NAILMQWFEEIHKHISS--LLK 448 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCc-eEEECc-HHHHHHHHHHHHHhccc--cce
Q ss_pred EEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHcccccccc---------------CCCccE--EEEeCCccccCC
Q 004518 387 VQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATR---------------LMGVKV--LVLDEADHLLDM 449 (747)
Q Consensus 387 ~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~---------------L~~i~~--vIiDEAh~ll~~ 449 (747)
+..+.|=............. +|||++|+..|...+.....+... |-.+.+ |++|||..+-..
T Consensus 449 v~~Y~Girk~~~~~~~el~~-yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFELLQ-YDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred EEEEechhhhcccCchhhhc-cCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Q ss_pred C-cHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH
Q 004518 450 G-FRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 450 ~-f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
. ....+...+...+ .-+.|.|+-..+..+.-.+
T Consensus 528 sS~~a~M~~rL~~in----~W~VTGTPiq~Iddl~~Ll 561 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAIN----RWCVTGTPIQKIDDLFPLL 561 (1394)
T ss_pred HHHHHHHHHHhhhhc----eeeecCCchhhhhhhHHHH
No 265
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.14 E-value=0.17 Score=56.97 Aligned_cols=50 Identities=10% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCccEEEEeCCccccCCC-cHHHHHHHHHHCC-CCCeEEEEeccCChHHHHH
Q 004518 433 MGVKVLVLDEADHLLDMG-FRKDIEKIIAAVP-KQRQTLLFSATVPEEVRQI 482 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~-~~~q~il~SATl~~~v~~l 482 (747)
.++++|||||+|.+.... ....+..++..+. ...++|+.|-+.|.++..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999886532 3344455554432 3345554444445555433
No 266
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.09 E-value=0.57 Score=55.73 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=39.9
Q ss_pred ECchhHHHHHHccccccccCCCccEEEEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEeccCChH-HHHHHHHH
Q 004518 413 ATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEE-VRQICHIA 486 (747)
Q Consensus 413 ~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~SATl~~~-v~~l~~~~ 486 (747)
.+|..+.+.+.. +.+.++|+||=+=+.-. ......+..+.....+...++++|||...+ +.++...|
T Consensus 249 ~~~~~l~~al~~-------~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 249 KDAADLRFALAA-------LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCHHHHHHHHHH-------hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 366666666543 34568899998876542 223444444444455566788889987543 44455544
No 267
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.56 Score=53.31 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=27.6
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChH
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEE 478 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~ 478 (747)
...++++||||+|.|....+ +.+.+.+..-|+...+| |.+|-...
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fI-latte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFI-LATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEE-EEeCChHH
Confidence 35789999999998875433 34555565555554444 44454333
No 268
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.02 E-value=0.21 Score=60.20 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 300 EKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
..+++-|.+++.. ....++|.|..|||||.+..-- +.+++.... -.+-++|+++-|+.+|..+.+.+.+++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~r-ia~Li~~~~------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHR-IAHLIAEKN------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHH-HHHHHHcCC------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3588999999874 3567999999999999974433 344443221 122359999999999999999998875
Q ss_pred h
Q 004518 380 K 380 (747)
Q Consensus 380 ~ 380 (747)
.
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 4
No 269
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.26 Score=57.24 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=28.4
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
....+++||||||.|.... .+.+.+++..-+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CChH
Confidence 3578999999999987543 344556666655555555544 5443
No 270
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.95 E-value=0.42 Score=51.72 Aligned_cols=40 Identities=15% Similarity=0.363 Sum_probs=25.3
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
....+|||||+|.+.. .....+..++...+....+|+ +++
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEE-EeC
Confidence 4567999999998763 234455566666555555544 444
No 271
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.14 Score=55.45 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHHCCC----cEEEEcCCCChhHHHHH
Q 004518 301 KMTIVQEATLPVLLKGK----DVLAKAKTGTGKTVAFL 334 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~----dvlv~a~TGsGKTl~~~ 334 (747)
.++|+|...+..+.... -.+++||.|.|||+.+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 35799999998777542 48899999999998543
No 272
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.89 E-value=0.79 Score=49.04 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
++.+++.|++|+|||.... .+.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999998533 3444544
No 273
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.84 E-value=0.76 Score=53.92 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=24.7
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEE
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~ 471 (747)
..++++||||||+|.... .+.+.+++..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999887543 34455566655555444443
No 274
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.82 E-value=0.26 Score=50.10 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCCccEEEEeCCccccCCC-cHHHHHHHHHHCC-CCCeEEEEeccCChHHH
Q 004518 432 LMGVKVLVLDEADHLLDMG-FRKDIEKIIAAVP-KQRQTLLFSATVPEEVR 480 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~-~~~q~il~SATl~~~v~ 480 (747)
+.++++||||.+|.+.... ....+..++..+. ...++|+.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 4578999999999987532 3445555555443 34567666667666543
No 275
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.74 E-value=0.23 Score=53.38 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=38.1
Q ss_pred CcHHHHHHHHH-HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHH
Q 004518 302 MTIVQEATLPV-LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELA 368 (747)
Q Consensus 302 ~t~iQ~~~i~~-il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 368 (747)
+++.|...+.. +..+.++||+|+||||||+. +-.++..+.... +..+++++-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~--------~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA--------PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC--------CCceEEEecCCcccc
Confidence 66777777654 45568999999999999984 333444443221 123577777777764
No 276
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.71 E-value=0.65 Score=54.26 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=27.2
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
....++|||||+|.|.... .+.+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999987533 344555666666666666544
No 277
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.70 E-value=0.44 Score=53.75 Aligned_cols=49 Identities=12% Similarity=0.363 Sum_probs=27.0
Q ss_pred CccEEEEeCCccccCCC-cHHHHHHHHHHCCCCCeEEEEecc-CChHHHHH
Q 004518 434 GVKVLVLDEADHLLDMG-FRKDIEKIIAAVPKQRQTLLFSAT-VPEEVRQI 482 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~-f~~~l~~il~~~~~~~q~il~SAT-l~~~v~~l 482 (747)
+.++|||||+|.+.+.. ....+..++..+......++++++ .|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46899999999886532 233444444444332224555554 44444443
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.69 E-value=0.8 Score=49.18 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=26.5
Q ss_pred CccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 434 GVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
..++|||||+|.+........+..++...+...++|+ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE-EcC
Confidence 4578999999988433344556666776666665554 444
No 279
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.68 E-value=0.44 Score=48.55 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=25.9
Q ss_pred CccEEEEeCCccccCCCcHHHHHHHHHHCCCCCe-EEEEeccCCh
Q 004518 434 GVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQ-TLLFSATVPE 477 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q-~il~SATl~~ 477 (747)
..++|||||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 45789999999875432 3344445544333333 4777777654
No 280
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.68 E-value=1.4 Score=46.34 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCccEEEEeCCcccc-CCCcHHHHHHHHHHCC------CCCeEEEEeccCChHHHHHHHHH
Q 004518 433 MGVKVLVLDEADHLL-DMGFRKDIEKIIAAVP------KQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~------~~~q~il~SATl~~~v~~l~~~~ 486 (747)
.++++||||=+-++. +......+..+....+ +...++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 467899999887764 3334556666666555 56678899999765544444443
No 281
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.62 E-value=0.81 Score=53.03 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=81.7
Q ss_pred HCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhh-CCCceEEEEeC
Q 004518 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKY-HPSIGVQVVIG 392 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~-~~~~~~~~~~g 392 (747)
++.+-.++..|=-.|||.... +++..++..- .+.+|++++|.+..+..+++++...+.. .+.-.+..+.|
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~--------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATF--------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhC--------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 445677888888999999644 6666555332 2567999999999999999988887542 12212222222
Q ss_pred CcchHHHHHHHhcCC-CcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHC-CCCCeEEE
Q 004518 393 GTRLALEQKRMQANP-CQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV-PKQRQTLL 470 (747)
Q Consensus 393 g~~~~~~~~~l~~~~-~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~-~~~~q~il 470 (747)
.... ..+..+. ..|.++|- .+.. ...=.+++++|||||+-+.+.. +..++..+ ..+.++|+
T Consensus 323 -e~I~---i~f~nG~kstI~FaSa-------rntN--siRGqtfDLLIVDEAqFIk~~a----l~~ilp~l~~~n~k~I~ 385 (738)
T PHA03368 323 -ETIS---FSFPDGSRSTIVFASS-------HNTN--GIRGQDFNLLFVDEANFIRPDA----VQTIMGFLNQTNCKIIF 385 (738)
T ss_pred -cEEE---EEecCCCccEEEEEec-------cCCC--CccCCcccEEEEechhhCCHHH----HHHHHHHHhccCccEEE
Confidence 2110 0001111 35666531 1110 0122468999999999887633 33333222 23788999
Q ss_pred EeccCCh
Q 004518 471 FSATVPE 477 (747)
Q Consensus 471 ~SATl~~ 477 (747)
+|.|.+.
T Consensus 386 ISS~Ns~ 392 (738)
T PHA03368 386 VSSTNTG 392 (738)
T ss_pred EecCCCC
Confidence 9999754
No 282
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.57 E-value=0.6 Score=51.26 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
.....+|||||||.|.. .-...+.+.+...+....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 35678999999998763 3444566666665555555554443
No 283
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.54 E-value=0.12 Score=55.00 Aligned_cols=62 Identities=26% Similarity=0.247 Sum_probs=44.1
Q ss_pred CCCCCCcHHHHHHHHHHHCCC-cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 004518 297 AGYEKMTIVQEATLPVLLKGK-DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQ 370 (747)
Q Consensus 297 ~g~~~~t~iQ~~~i~~il~~~-dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q 370 (747)
..|..+++-|...+..+...+ ++|++|.||||||+ ++-++.... . +.-++|++--|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i---~-------~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFI---D-------SDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcC---C-------CcccEEEEeehhhhccC
Confidence 356789999999998777765 99999999999999 333332221 1 11258888888877544
No 284
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.35 E-value=0.39 Score=57.26 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHh-ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGE-LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 520 k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~-~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
|...+..++...+.. +.++||.+|++..+..+.+.|++ .+..+..+||+++..+|.+++.....|...|+|+|..+.
T Consensus 175 KT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 175 KTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred HHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 433344444444433 45899999999999999999876 478899999999999999999999999999999997443
Q ss_pred cccCCCCccEEEEeC
Q 004518 599 RGVDYPDVTLVIQVG 613 (747)
Q Consensus 599 ~GiDip~V~~VI~~d 613 (747)
. +.+.++.+||.-+
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5567888888554
No 285
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.28 E-value=0.98 Score=48.55 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
....+++|||+||.|.. .-.+.+.+++..-|....+|+.|..
T Consensus 111 ~g~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 111 YGIAQVVIVDPADAINR-AACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred cCCcEEEEeccHhhhCH-HHHHHHHHHhhCCCCCCeEEEEECC
Confidence 34678999999999874 3455666777776666666666543
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.21 E-value=0.48 Score=50.15 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChhHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~l 335 (747)
++.++++||||+|||+....
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999986443
No 287
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.13 E-value=0.52 Score=52.50 Aligned_cols=136 Identities=16% Similarity=0.260 Sum_probs=74.2
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHH-HHHHHHHHHHHHhhhCCCceEEEEeCCcch
Q 004518 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRE-LATQAATEASTLLKYHPSIGVQVVIGGTRL 396 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~-La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~ 396 (747)
-.++.|..|||||.+..+-++..++... ++.+++|+-|+.. |...+...+....... ++....-......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~ 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc
Confidence 4688999999999988877777776541 2356899999886 6666666666554432 2221111111100
Q ss_pred HHHHHHHhcCCCcEEEECc-hhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCC--CCCeEEEEec
Q 004518 397 ALEQKRMQANPCQILVATP-GRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVP--KQRQTLLFSA 473 (747)
Q Consensus 397 ~~~~~~l~~~~~~IlV~Tp-g~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~--~~~q~il~SA 473 (747)
.. .+...+..|++..- ....+ + .....+.++.+|||..+... .+..++..+. .....+++|.
T Consensus 74 --~i-~~~~~g~~i~f~g~~d~~~~-i-------k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~ 138 (396)
T TIGR01547 74 --EI-KILNTGKKFIFKGLNDKPNK-L-------KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSS 138 (396)
T ss_pred --EE-EecCCCeEEEeecccCChhH-h-------hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEc
Confidence 00 00111334555443 11111 1 11234689999999987543 3333333333 2222478888
Q ss_pred cCCh
Q 004518 474 TVPE 477 (747)
Q Consensus 474 Tl~~ 477 (747)
|+..
T Consensus 139 NP~~ 142 (396)
T TIGR01547 139 NPES 142 (396)
T ss_pred CcCC
Confidence 8654
No 288
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.12 E-value=0.56 Score=51.19 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
..+.+|||||||.|... -.+.+.+++..-+....+|++|
T Consensus 140 g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 46789999999998643 3455666777655555555554
No 289
>PRK10867 signal recognition particle protein; Provisional
Probab=93.11 E-value=1.5 Score=49.05 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHh
Q 004518 433 MGVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIAL 487 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~ 487 (747)
..+++||||=|=++. +......+..+...+.+..-++.++|+...+..+.+..+.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHH
Confidence 357888888887654 2234455555555555555577788877655555554443
No 290
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.10 E-value=0.41 Score=56.14 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
+..+++|||||+|.|.... ...+.+++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876432 344556666656666555544
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.06 E-value=0.36 Score=63.89 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHHCC--CcEEEEcCCCChhHHHHH---HHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 004518 300 EKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFL---LPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAA 372 (747)
Q Consensus 300 ~~~t~iQ~~~i~~il~~--~dvlv~a~TGsGKTl~~~---lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 372 (747)
..+++.|++++..++.+ +-++|.|..|+|||++.. -++.+.+ +. .+..++.++||-..|..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~~---------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-ES---------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-Hh---------cCCeEEEEeChHHHHHHHH
Confidence 46899999999998865 567889999999998531 2233332 21 1345888999987776654
No 292
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.97 E-value=0.88 Score=53.24 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
..++++||||+|+|....| +.+.+.+..-+....+|+ .+|-
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL-~Ttd 163 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVL-ATTD 163 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEE-EECC
Confidence 4688999999999875443 334455555444444544 4454
No 293
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.96 E-value=0.27 Score=62.59 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
++|+-|+++|. ..+++++|.|.-|||||.+..--++..+.... ..-++|+|+=|+..|..+.+++.+.+
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~--------~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV--------DIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--------CHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 36889999997 46889999999999999986555666554321 11239999999999999998887654
No 294
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.94 E-value=0.68 Score=48.33 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHH----CCC-cEEEEcCCCChhHHH
Q 004518 302 MTIVQEATLPVLL----KGK-DVLAKAKTGTGKTVA 332 (747)
Q Consensus 302 ~t~iQ~~~i~~il----~~~-dvlv~a~TGsGKTl~ 332 (747)
+++.+.+++..+. .+. .++++|++|+|||+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4555555555442 223 588999999999985
No 295
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.92 E-value=0.83 Score=44.87 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=56.6
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcch
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~ 396 (747)
+-.++++|+.||||.-.+.- +...... +.++++..|-..- .+..-.+....| ..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r-~~~~~~~----------g~~v~vfkp~iD~-------------R~~~~~V~Sr~G-~~- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRR-ARRYKEA----------GMKVLVFKPAIDT-------------RYGVGKVSSRIG-LS- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHH-HHHHHHc----------CCeEEEEeccccc-------------ccccceeeeccC-Cc-
Confidence 34689999999999963332 2222211 3348888883210 010111222222 11
Q ss_pred HHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHH
Q 004518 397 ALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAA 461 (747)
Q Consensus 397 ~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~ 461 (747)
...++|-++..+.+.+.... ....+++|.||||+=+.. .....+..+...
T Consensus 59 ----------~~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~~~-~~v~~l~~lad~ 108 (201)
T COG1435 59 ----------SEAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFFDE-ELVYVLNELADR 108 (201)
T ss_pred ----------ccceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhCCH-HHHHHHHHHHhh
Confidence 13567778888888887542 112378999999985443 333444444444
No 296
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.67 E-value=0.63 Score=47.39 Aligned_cols=127 Identities=19% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHc-CCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCC
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIK-SPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGG 393 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~-~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg 393 (747)
.|..+++.|++|+|||+..+-.+.+.+.+ .. ++++++- .+-..++.+.+..+. +.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-----------~vlyvs~-ee~~~~l~~~~~s~g-----~d------- 73 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE-----------KVLYVSF-EEPPEELIENMKSFG-----WD------- 73 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-------------EEEEES-SS-HHHHHHHHHTTT-----S--------
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-----------cEEEEEe-cCCHHHHHHHHHHcC-----Cc-------
Confidence 35789999999999998655555555544 32 2777663 344456666555442 10
Q ss_pred cchHHHHHHHh-cCCCcEEEE----------CchhHHHHHHccccccccCCCccEEEEeCCccccC----CCcHHHHHHH
Q 004518 394 TRLALEQKRMQ-ANPCQILVA----------TPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD----MGFRKDIEKI 458 (747)
Q Consensus 394 ~~~~~~~~~l~-~~~~~IlV~----------Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~----~~f~~~l~~i 458 (747)
..... .+...++=+ .+..+...+... ..-.+.+.+|||-...+.. ..++..+..+
T Consensus 74 ------~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~----i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l 143 (226)
T PF06745_consen 74 ------LEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREA----IEELKPDRVVIDSLSALLLYDDPEELRRFLRAL 143 (226)
T ss_dssp ------HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHH----HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHH
T ss_pred ------HHHHhhcCCEEEEecccccccccccCHHHHHHHHHHH----HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHH
Confidence 00000 111111111 222333333321 1111348999999887722 2255666667
Q ss_pred HHHCCCCCeEEEEeccC
Q 004518 459 IAAVPKQRQTLLFSATV 475 (747)
Q Consensus 459 l~~~~~~~q~il~SATl 475 (747)
...+.....++++++..
T Consensus 144 ~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 144 IKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHCCCEEEEEEcc
Confidence 66666666677777774
No 297
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.62 Score=53.51 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=26.8
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
.+++++||||||.|....+ ..+.+++...|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3678999999998875433 44556677666666555544
No 298
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.64 E-value=1 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=15.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHHH
Q 004518 319 VLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 319 vlv~a~TGsGKTl~~~lpil~~l 341 (747)
++|.|+||+|||++. -.++..+
T Consensus 784 LYIyG~PGTGKTATV-K~VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHH
Confidence 469999999999973 3344444
No 299
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.63 E-value=0.5 Score=49.40 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFL 334 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~ 334 (747)
.++++.||+|+|||+++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999998543
No 300
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.56 E-value=0.52 Score=54.14 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 520 HFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL-KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 520 k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~-~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
|...+..++...+.. ++++||.+|+...+..+++.|++. +..+..+||+++..+|.+++....+|...|+|+|..+-
T Consensus 10 KT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 10 KTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred HHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 333334444444433 458999999999999999888764 67889999999999999999999999999999997543
Q ss_pred cccCCCCccEEEEeC
Q 004518 599 RGVDYPDVTLVIQVG 613 (747)
Q Consensus 599 ~GiDip~V~~VI~~d 613 (747)
. ..++++.+||.-.
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4567888888443
No 301
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.52 E-value=0.4 Score=51.63 Aligned_cols=66 Identities=26% Similarity=0.355 Sum_probs=41.8
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHH
Q 004518 291 LKGIKDAGYEKMTIVQEATLPV-LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTREL 367 (747)
Q Consensus 291 ~~~l~~~g~~~~t~iQ~~~i~~-il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~L 367 (747)
+..+...|. +++.|.+.+.. +..+++++|+|+||||||+. +-.++..+.... +..+++++-.+.|+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 344444454 56778777764 55678999999999999974 333444332111 12347777777766
No 302
>PTZ00293 thymidine kinase; Provisional
Probab=92.51 E-value=0.79 Score=45.98 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCc
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPT 364 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Pt 364 (747)
|+-.++.||++||||+- +|-.+......+ .+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~ag----------~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYSE----------KKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHcC----------CceEEEEec
Confidence 45578999999999985 333333332222 238888884
No 303
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.47 E-value=2.2 Score=47.71 Aligned_cols=53 Identities=4% Similarity=0.188 Sum_probs=36.0
Q ss_pred CccEEEEeCCccccC-CCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH
Q 004518 434 GVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
.+++||||=|-++-. ......+..+.....+..-+++++||...+....+..+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 578899998876542 23456666666666667778899999876555555444
No 304
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.46 E-value=1 Score=43.45 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
..++++|||+||.|.. .-...+.+++..-|....+|++|...
T Consensus 101 ~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 4688999999998874 34566777777777676666665443
No 305
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=2.4 Score=49.66 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=27.7
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
...++++||||+|.|.... ...+.+++..-+....+|+ .+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl-~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIF-ATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEE-EeCChh
Confidence 3578999999999887433 3455566666555554444 445443
No 306
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.39 E-value=2.1 Score=41.08 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=40.3
Q ss_pred CCCccEEEEeCCccccCCC--cHHHHHHHHHHCCCCCeEEEEeccCChHHHHHH
Q 004518 432 LMGVKVLVLDEADHLLDMG--FRKDIEKIIAAVPKQRQTLLFSATVPEEVRQIC 483 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~--f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~ 483 (747)
...+++||+||+=..+..+ -.+.+..++...|...-+|+.+-..|+++.+.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 3478999999998876665 356777888888888878887778888776654
No 307
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.25 E-value=0.72 Score=52.79 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChhHHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~l 335 (747)
+.+|++||.|+|||+++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999996544
No 308
>PLN03025 replication factor C subunit; Provisional
Probab=92.24 E-value=1.9 Score=46.54 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=24.6
Q ss_pred CccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 434 GVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
..+++||||||.|.... ...+..++...+.... ++++++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 46899999999987432 3445555555444444 4444443
No 309
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.20 E-value=0.85 Score=53.99 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=75.5
Q ss_pred ccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-c-ccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 518 DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL-K-LNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 518 ~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~-~-~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
..|.+.+..++...+.. ++.+||.+|.+..+..+...|+.. + ..+..+|++++..+|.+.+....+|+.+|+|.|-
T Consensus 171 SGKTevyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 171 EDWARRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CcHHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 45677777777777664 458999999999999999999864 3 5689999999999999999999999999999997
Q ss_pred CcccccCCCCccEEEEeC
Q 004518 596 VSARGVDYPDVTLVIQVG 613 (747)
Q Consensus 596 v~~~GiDip~V~~VI~~d 613 (747)
.+-- .-+++..+||..+
T Consensus 249 SAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 249 SAVF-APVEDLGLVAIWD 265 (665)
T ss_pred eeEE-eccCCCCEEEEEc
Confidence 6542 4456777777544
No 310
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.15 E-value=0.58 Score=55.95 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHh----ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC-cccccCCCCccEEEE
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGE----LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV-SARGVDYPDVTLVIQ 611 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~----~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v-~~~GiDip~V~~VI~ 611 (747)
+.+++|.+||..-+...++.|+. .++.+..+||+++..+|..++....+|...|+|+|.. +...+.+.++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 45899999999988887776654 3689999999999999999999999999999999964 445678889999884
No 311
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.07 E-value=2.3 Score=45.73 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCccEEEEeCCccccC-CCcHHHHHHHHHHC------CCCCeEEEEeccCChHHHHHHHHH
Q 004518 433 MGVKVLVLDEADHLLD-MGFRKDIEKIIAAV------PKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~------~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
.++++||||=+-++.. ......+..+...+ .+...++.++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 5689999999987653 33445555554432 234457899999755433333333
No 312
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.99 E-value=0.58 Score=42.62 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.7
Q ss_pred EEEEcCCCChhHHH
Q 004518 319 VLAKAKTGTGKTVA 332 (747)
Q Consensus 319 vlv~a~TGsGKTl~ 332 (747)
+++.||.|+|||+.
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999984
No 313
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.97 E-value=0.46 Score=50.72 Aligned_cols=67 Identities=34% Similarity=0.427 Sum_probs=40.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHH
Q 004518 291 LKGIKDAGYEKMTIVQEATLPV-LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELA 368 (747)
Q Consensus 291 ~~~l~~~g~~~~t~iQ~~~i~~-il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 368 (747)
++.+...|. +++-|...+.. +..+++++|+|+||||||+. +-.++..+.+. .+..+++++-.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~--------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN--------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc--------CCCceEEEECCchhhc
Confidence 344444443 55666666644 45568999999999999994 23333443221 1123578888877764
No 314
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=0.64 Score=54.22 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=26.5
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
.+++++||||||+|.... ...+.+++...+....+|+ .+|-
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EECC
Confidence 467899999999887543 3456666666555554444 4453
No 315
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.79 E-value=1.2 Score=43.36 Aligned_cols=52 Identities=13% Similarity=0.397 Sum_probs=39.6
Q ss_pred CCccEEEEeCCccccCCCc--HHHHHHHHHHCCCCCeEEEEeccCChHHHHHHH
Q 004518 433 MGVKVLVLDEADHLLDMGF--RKDIEKIIAAVPKQRQTLLFSATVPEEVRQICH 484 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f--~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~ 484 (747)
..+++||+||+-..++.++ .+.+..++...|...-+|+..-..|+++.+++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 4689999999998777663 456777888888887777777777887766543
No 316
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.74 E-value=0.52 Score=53.10 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
..+.++||||||+|.... ...+.+.+..-+... ++++.+|-
T Consensus 120 g~~KV~IIDEah~Ls~~A-~NALLKtLEEPp~~v-iFILaTte 160 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS-FNALLKTLEEPPAHI-VFILATTE 160 (484)
T ss_pred CCCEEEEEechhhcCHHH-HHHHHHHhhcCCCce-EEEeecCC
Confidence 357899999999887433 334444444433222 33444443
No 317
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.67 E-value=0.69 Score=55.66 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChH
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEE 478 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~ 478 (747)
..+.++||||||+|... -...+.+++..-+....+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 35789999999998633 334555566655555555554 444433
No 318
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.63 E-value=0.53 Score=49.32 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHCCCcEEEEcCCCChhHHHHHHHHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEV 340 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~lpil~~ 340 (747)
+..+..+++.|++|+|||+..+.-+.+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999998544333333
No 319
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.61 E-value=0.81 Score=45.15 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCc
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGT 394 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~ 394 (747)
..-.+++...+|.|||.+++--++..+-. +.+|+|++=.+--.. ..+...+ ...+++. ....|.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-----------G~~V~ivQFlKg~~~--~GE~~~l-~~l~~v~--~~~~g~ 84 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-----------GKKVGVVQFIKGAWS--TGERNLL-EFGGGVE--FHVMGT 84 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-----------CCeEEEEEEecCCCc--cCHHHHH-hcCCCcE--EEECCC
Confidence 45678999999999999877666666532 345888876553210 1111111 1112222 222222
Q ss_pred chHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCc--HHHHHHHHHHCCCCCeEEEEe
Q 004518 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGF--RKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 395 ~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f--~~~l~~il~~~~~~~q~il~S 472 (747)
..... ..+.+--+......+...... ..-..+++||+||+=..++.++ .+.+..++...|...-+|+.-
T Consensus 85 ~~~~~-----~~~~~e~~~~~~~~~~~a~~~----l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTG 155 (191)
T PRK05986 85 GFTWE-----TQDRERDIAAAREGWEEAKRM----LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITG 155 (191)
T ss_pred CCccc-----CCCcHHHHHHHHHHHHHHHHH----HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEEC
Confidence 11100 000000000001111221111 1124689999999998887774 466777788877777676666
Q ss_pred ccCChHHHHHHH
Q 004518 473 ATVPEEVRQICH 484 (747)
Q Consensus 473 ATl~~~v~~l~~ 484 (747)
-..|+++.+.+.
T Consensus 156 R~~p~~Lie~AD 167 (191)
T PRK05986 156 RGAPRELIEAAD 167 (191)
T ss_pred CCCCHHHHHhCc
Confidence 667777766543
No 320
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.57 E-value=0.29 Score=49.35 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChhHHHH
Q 004518 317 KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~ 333 (747)
.++|++||.|+|||+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 36999999999999843
No 321
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.55 E-value=0.56 Score=51.56 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEE
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~ 471 (747)
....++||||||.|....+ ..+.+.+...+....+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4578999999999875332 3344455554455544443
No 322
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=1.1 Score=51.28 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.9
Q ss_pred EEEEcCCCChhHHHHH
Q 004518 319 VLAKAKTGTGKTVAFL 334 (747)
Q Consensus 319 vlv~a~TGsGKTl~~~ 334 (747)
+|++||.|+|||++..
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999999644
No 323
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.42 E-value=1.6 Score=50.94 Aligned_cols=45 Identities=27% Similarity=0.379 Sum_probs=25.7
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHH
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEV 479 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v 479 (747)
....+|||||||.|.... ...+.+.+..-+ ..-++++.+|-+..+
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~-~~~ifILaTt~~~kl 162 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEEPP-ARVTFVLATTEPHKF 162 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhccC-CCEEEEEecCChhhh
Confidence 467899999999886322 233444444322 333455656654443
No 324
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.31 E-value=1 Score=50.98 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.+.-+++.|++|+|||+..+..+.+.. +. +.+++++.- .+...|+...+.++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~----------g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-AA----------GGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-hc----------CCeEEEEEc-cccHHHHHHHHHHc
Confidence 456789999999999985433333322 11 224788764 45556776666555
No 325
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=91.31 E-value=1 Score=51.08 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=39.4
Q ss_pred EECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHH
Q 004518 412 VATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQ 481 (747)
Q Consensus 412 V~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~ 481 (747)
+.+||-..++-... ..+.+-.+.|+|||-.-++.+....+-++..... +-++|-.-.+.+.+
T Consensus 570 vLS~GEqQRLa~AR----Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 570 VLSPGEQQRLAFAR----LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLWK 631 (659)
T ss_pred hcCHHHHHHHHHHH----HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHHh
Confidence 44666554443322 2345678999999998887777776666666654 55666665555544
No 326
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.29 E-value=0.49 Score=47.47 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChhHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFL 334 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~ 334 (747)
.++|+.||.|+|||++.+
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 579999999999999643
No 327
>PF13173 AAA_14: AAA domain
Probab=91.21 E-value=2 Score=39.34 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=23.7
Q ss_pred CccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEec
Q 004518 434 GVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSA 473 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SA 473 (747)
.-.+|+|||+|.+.+ +...+..+.... ++.++++.+.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 346799999999875 455566665544 4455555443
No 328
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.15 E-value=2.4 Score=43.41 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCChhHHHH
Q 004518 314 LKGKDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~ 333 (747)
..+..+++.|++|+|||+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILS 41 (230)
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 45678999999999999863
No 329
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.10 E-value=1.4 Score=47.53 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=28.2
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
....+++|||+||.|... -...+.+++..-|....+| +.++-+
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fi-L~t~~~ 147 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFL-LQADLS 147 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEE-EEECCh
Confidence 356899999999998843 4556666677655555444 444433
No 330
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.08 E-value=4 Score=46.32 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~l 335 (747)
++.+.++||||+|||++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 46788999999999996443
No 331
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.05 E-value=2.4 Score=47.22 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
.....++||||||.|.... ...+.+.+...++.. ++++.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 4577899999999987532 233444444444433 4444444
No 332
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.00 E-value=1.6 Score=47.32 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHCC-----CcEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 302 MTIVQEATLPVLLKG-----KDVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 302 ~t~iQ~~~i~~il~~-----~dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
++|+|...+..+... .-.++.||.|.||+..+.. +.+.++
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHc
Confidence 367888777666542 3578999999999986433 334444
No 333
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.99 E-value=1.3 Score=51.67 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=25.6
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
...+.++||||+|.|.... ...+.+.+...|... ++++.+|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a-~naLLKtLEepp~~~-ifIlatt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGA-FNALLKTLEEPPAHV-IFILATTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHhcCCCCCe-EEEEEeCChh
Confidence 3568899999999887433 233444454444333 4444455443
No 334
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.99 E-value=1.1 Score=49.69 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhHHH
Q 004518 317 KDVLAKAKTGTGKTVA 332 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~ 332 (747)
.+++|.|++|+|||++
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999995
No 335
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.90 E-value=1.6 Score=49.66 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.3
Q ss_pred EEEEcCCCChhHHHHHH
Q 004518 319 VLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 319 vlv~a~TGsGKTl~~~l 335 (747)
+|++||.|+|||+++.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999996443
No 336
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.86 E-value=0.83 Score=54.83 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhcc-----cccee-ccCCCCHHHHHHHHHHHhcCCccEEEeeCCcc
Q 004518 536 PEYKVLVFCTTAMVTRMVADLLGELK-----LNVRE-IHSRKPQSYRTRVSDEFRKSKGLILVTSDVSA 598 (747)
Q Consensus 536 ~~~k~LVF~~s~~~~~~l~~~L~~~~-----~~v~~-lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~~ 598 (747)
.++++++.+||..-+.++++.|.+.. ..+.. +|+.|+.+++..++++|.+|..+|||+|+.+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 34699999999999999998887652 44333 99999999999999999999999999997653
No 337
>PRK06620 hypothetical protein; Validated
Probab=90.73 E-value=0.56 Score=47.46 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChhHHH
Q 004518 317 KDVLAKAKTGTGKTVA 332 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~ 332 (747)
+.++++||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999984
No 338
>PRK04195 replication factor C large subunit; Provisional
Probab=90.64 E-value=1.6 Score=50.01 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHH
Q 004518 316 GKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~ 332 (747)
.+.+++.||.|+|||++
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999985
No 339
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.61 E-value=0.33 Score=52.63 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=27.8
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
....+++|||+||.|... -.+.+.+++..=|... ++++.+.-+
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t-~fiL~t~~~ 148 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENT-WFFLACREP 148 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCe-EEEEEECCh
Confidence 457899999999998743 4555666666644444 444444433
No 340
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.59 E-value=2.3 Score=43.63 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.+..++|.|++|+|||+..+-.+.+.+.+. -++++++ +.+-..++.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g-----------e~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-----------EPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CcEEEEE-eeCCHHHHHHHHHHh
Confidence 357899999999999986444444444221 2377766 455666776666654
No 341
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.42 E-value=1.9 Score=49.82 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=26.0
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
..++++||||||.|.... .+.+.+.+...|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 467899999999887533 334555566655566565554
No 342
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.35 E-value=0.41 Score=51.98 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHH
Q 004518 311 PVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELA 368 (747)
Q Consensus 311 ~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 368 (747)
.++..+++++|+|+||||||+. +-.++..+- +..+++.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~-----------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP-----------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccC-----------CCCCEEEECCCcccc
Confidence 3455678999999999999993 222222221 112377777877764
No 343
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.31 E-value=0.61 Score=52.26 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHCCC--cEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 303 TIVQEATLPVLLKGK--DVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 303 t~iQ~~~i~~il~~~--dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
++.|...+..+++.. =+++.||||||||+. +..+++.+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 677777776666553 478999999999996 555666653
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.28 E-value=8.6 Score=37.10 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=31.8
Q ss_pred CccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH
Q 004518 434 GVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 434 ~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
..+++|+|....+. +......+..+........-++.++|+...+.......+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 56889999988653 223344454444444455667778887655554444443
No 345
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=1.5 Score=50.54 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=26.4
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
....++||||||+|... -...+.+.+..-|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 46789999999998753 3345556666655566555544
No 346
>CHL00181 cbbX CbbX; Provisional
Probab=90.23 E-value=4.3 Score=43.03 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChhHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~l 335 (747)
+.++++.||+|+|||+++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999996543
No 347
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.14 E-value=0.087 Score=61.89 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=66.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcch
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRL 396 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~ 396 (747)
+..|+....|-|||...+..++.+-..... .+......-.||+||+ .+..||...+.+.... ..+.+.+++| .
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~--~~~~~~~kttLivcp~-s~~~qW~~elek~~~~-~~l~v~v~~g---r 225 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKE--EDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEE-DKLSIYVYHG---R 225 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcc--hhhccccCceeEecch-HHHHHHHHHHhccCCc-cceEEEEecc---c
Confidence 468999999999998643333322111110 0011123348899997 5556888877444332 2455655555 1
Q ss_pred HHHHHHHhcCCCcEEEECchhHHH-HHHccccccccCCCccEEEEeCCccccC
Q 004518 397 ALEQKRMQANPCQILVATPGRLRD-HIENTAGFATRLMGVKVLVLDEADHLLD 448 (747)
Q Consensus 397 ~~~~~~l~~~~~~IlV~Tpg~Ll~-~l~~~~~~~~~L~~i~~vIiDEAh~ll~ 448 (747)
..+...+ ...+|+++||+.|.. .+. --.+-.+|+||||.+.+
T Consensus 226 ~kd~~el--~~~dVVltTy~il~~~~l~--------~i~w~Riildea~~ikn 268 (674)
T KOG1001|consen 226 TKDKSEL--NSYDVVLTTYDILKNSPLV--------KIKWLRIVLDEAHTIKN 268 (674)
T ss_pred ccccchh--cCCceEEeeHHHhhccccc--------ceeEEEEEeccccccCC
Confidence 1112222 236899999998863 111 12345699999998543
No 348
>PF05729 NACHT: NACHT domain
Probab=90.14 E-value=2.5 Score=39.95 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=23.5
Q ss_pred EEEEeCCccccCCC-------cHHHHHHHHHH-CCCCCeEEEEecc
Q 004518 437 VLVLDEADHLLDMG-------FRKDIEKIIAA-VPKQRQTLLFSAT 474 (747)
Q Consensus 437 ~vIiDEAh~ll~~~-------f~~~l~~il~~-~~~~~q~il~SAT 474 (747)
++|||=.|.+.... +...+..++.. .++..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 48999999887522 23345455554 4566776666654
No 349
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.03 E-value=0.52 Score=46.22 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=20.6
Q ss_pred HHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHc
Q 004518 311 PVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIK 343 (747)
Q Consensus 311 ~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~ 343 (747)
.++.+++++++.|++|+|||..+. .+...+.+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~ 73 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAV-AIANEAIR 73 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHH-HHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHH-HHHHHhcc
Confidence 344567899999999999998643 34455554
No 350
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.03 E-value=1.8 Score=47.55 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.+.-+++.|++|+|||+..+..+ ..+.+. +.+++++.-. +...|+...+.++
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a-~~~a~~----------g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVA-ARLAKR----------GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH-HHHHhc----------CCeEEEEECC-cCHHHHHHHHHHc
Confidence 45778999999999998543333 333221 1247877653 4445666555554
No 351
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.99 E-value=1.4 Score=45.15 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
+..+++.|++|+|||+..+..+...+. . +.+++++.= .+-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-~----------g~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-Q----------GKKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-C----------CCEEEEEEc-CCCHHHHHHHHHHC
Confidence 567899999999999864444444432 1 123666554 33344555555554
No 352
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.95 E-value=0.46 Score=51.00 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
...++++|||+||.|.. .-.+.+.+.+..-|++..+ ++.++-+
T Consensus 106 ~~~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~t~f-iL~t~~~ 148 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE-SASNALLKTLEEPAPNCLF-LLVTHNQ 148 (319)
T ss_pred cCCceEEEecchhhhCH-HHHHHHHHHhcCCCCCeEE-EEEECCh
Confidence 35689999999999874 3455666677765555544 4444433
No 353
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.94 E-value=1.9 Score=51.54 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhHHHH
Q 004518 317 KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~ 333 (747)
.++++.||+|+|||++.
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999853
No 354
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=2.1 Score=46.94 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=20.7
Q ss_pred HHHHCC--CcEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 311 PVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 311 ~~il~~--~dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
|++..+ .++++.|+||+|||.+. -.++..+.
T Consensus 35 ~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 35 PALRGERPSNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred HHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHH
Confidence 444443 46999999999999863 33444443
No 355
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.79 E-value=1 Score=53.41 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=74.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHHHHHHhc-cccceeccCCCCHHHHHHHHHHHhcCCccEEEee
Q 004518 516 PLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGEL-KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTS 594 (747)
Q Consensus 516 ~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~~~L~~~-~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT 594 (747)
.-..|.+.+..++.+.+..+ +.+||-+|-+.....+.+.|+.. +.++..+|+++++.+|.....+..+|+.+|+|.|
T Consensus 226 TGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQG--KQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 34556677888888877654 59999999988888887777654 7899999999999999999999999999999999
Q ss_pred CCcccccCCCCccEEE
Q 004518 595 DVSARGVDYPDVTLVI 610 (747)
Q Consensus 595 ~v~~~GiDip~V~~VI 610 (747)
..|- =.-+++.-+||
T Consensus 304 RSAl-F~Pf~~LGLII 318 (730)
T COG1198 304 RSAL-FLPFKNLGLII 318 (730)
T ss_pred chhh-cCchhhccEEE
Confidence 7543 13345666666
No 356
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.74 E-value=1.1 Score=50.87 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 306 QEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 306 Q~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
|-++|.- -.++-+||+|..|||||++++--+...++..+.. -..++ |||+.|.+.++.-+..++=+|+.
T Consensus 217 QneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~----l~~k~-vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 217 QNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP----LQAKP-VLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred HHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccc----cccCc-eEEEcCcHHHHHHHHHhchhhcc
Confidence 4444431 3457799999999999998554444445543321 11122 99999999999988888877753
No 357
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.58 E-value=0.63 Score=45.64 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=28.6
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCC-CeEEEEec
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ-RQTLLFSA 473 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~-~q~il~SA 473 (747)
.+-+++++||...-++......+...+..+... .++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 466899999999988877666666666554333 55555543
No 358
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.45 E-value=6.2 Score=44.24 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=33.9
Q ss_pred CCccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH
Q 004518 433 MGVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
..+++||||=+-++. +......+..+...+.+.--+++++|+...+....+..+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 356788888887654 223445555666666555557788888766655555544
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.42 E-value=1.8 Score=51.33 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=37.4
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
=++|+|..|.+.+......+..++++.|.+.++++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999998888999999999999999999998754
No 360
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.38 E-value=2.2 Score=50.10 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=24.7
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
....+++||||||.|.... ...+.+.+..-+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999987533 234445555544444444443
No 361
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.36 E-value=1.3 Score=52.61 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHh----ccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc-ccccCCCCccEEEE
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGE----LKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS-ARGVDYPDVTLVIQ 611 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~----~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~-~~GiDip~V~~VI~ 611 (747)
+.+++|-+||..-+..+++.+++ .++.+..+||+++..++..++....+|...|+|+|..+ ...+.+.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 45899999999998888776654 37899999999999999999999999999999999654 35677888998884
No 362
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.32 E-value=1.8 Score=49.86 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
...+.++||||||.|... -...+.+.+..-|+...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 356889999999998743 3345566666666666555554
No 363
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.31 E-value=2.3 Score=48.33 Aligned_cols=150 Identities=10% Similarity=0.098 Sum_probs=82.9
Q ss_pred CCcHHHHHHHHHHHC------C----CcEEEEcCCCChhHHHHH-HHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHH
Q 004518 301 KMTIVQEATLPVLLK------G----KDVLAKAKTGTGKTVAFL-LPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT 369 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~------~----~dvlv~a~TGsGKTl~~~-lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~ 369 (747)
.+-|+|.-++-.|+. + +.++|..|-+-|||.... +.....+.... .+-.+.|++|+.+-+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~--------~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR--------SGAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh--------cCCcEEEEeccHHHHH
Confidence 467999999988872 1 357888888889998433 33333333321 2335999999999999
Q ss_pred HHHHHHHHHhhhCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCC
Q 004518 370 QAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDM 449 (747)
Q Consensus 370 Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~ 449 (747)
+.+..++......+.+...+-+ ..+...|.+.-....+..+..+..- ..-.+..+.|+||.|...+.
T Consensus 133 ~~F~~ar~mv~~~~~l~~~~~~------------q~~s~~i~~~~~~s~ik~~aa~~~~-~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 133 NSFNPARDMVKRDDDLRDLCNV------------QTHSRTITHRKTDSTIKAVAADPNT-VDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HhhHHHHHHHHhCcchhhhhcc------------ccceeEEEecccceeeeeeccCCCc-ccCCCcceEEEehhhhhcCH
Confidence 9988888776544322111110 0111112222111122222222111 11235678999999987754
Q ss_pred CcHHHHHHHHHHC--CCCCeEEEEec
Q 004518 450 GFRKDIEKIIAAV--PKQRQTLLFSA 473 (747)
Q Consensus 450 ~f~~~l~~il~~~--~~~~q~il~SA 473 (747)
+ ..+..+..-+ .++.+++..|.
T Consensus 200 ~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 200 E--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred H--HHHHHHHhhhccCcCceEEEEec
Confidence 2 3344443332 34566666664
No 364
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.24 E-value=0.83 Score=46.09 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=24.5
Q ss_pred cEEEEeCCcccc-C----CCcHHHHHHHHHHCC-CCCeEEEEeccC
Q 004518 436 KVLVLDEADHLL-D----MGFRKDIEKIIAAVP-KQRQTLLFSATV 475 (747)
Q Consensus 436 ~~vIiDEAh~ll-~----~~f~~~l~~il~~~~-~~~q~il~SATl 475 (747)
-+|||||+|.+. . ..+...+..++.... .....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 579999999988 2 235566666666632 233445566664
No 365
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.23 E-value=1.2 Score=51.38 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhh-cCCCCe-EEEEecchhHHHHHHHHHHhc-----cccceeccCCCCHHHHHHHHHHHhcCCccEEEe
Q 004518 521 FPLLYVLLREHVA-DNPEYK-VLVFCTTAMVTRMVADLLGEL-----KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593 (747)
Q Consensus 521 ~~~l~~~l~~~~~-~~~~~k-~LVF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLva 593 (747)
..++..+|..... ...... +||.+||++.+..+++.+... ++.+..++|+++...+...++. | ..||||
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVa 156 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVA 156 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEE
Confidence 4455555555331 222222 999999999999998887654 4668999999998877755555 6 899999
Q ss_pred eC-----Ccccc-cCCCCccEEE
Q 004518 594 SD-----VSARG-VDYPDVTLVI 610 (747)
Q Consensus 594 T~-----v~~~G-iDip~V~~VI 610 (747)
|+ .+.++ +++..|.++|
T Consensus 157 TPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 157 TPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred CccHHHHHHHcCCcchhhcCEEE
Confidence 95 55666 8999999988
No 366
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.15 E-value=1.5 Score=47.01 Aligned_cols=42 Identities=29% Similarity=0.484 Sum_probs=25.9
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
....+|||||||.|.. +-...+.+.+..-+... .++|++.-+
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~-~~il~~n~~ 149 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNT-RFILITNDP 149 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCe-EEEEEcCCh
Confidence 5689999999998874 33444555454444444 455555433
No 367
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.04 E-value=0.94 Score=47.51 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=28.2
Q ss_pred HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELA 368 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 368 (747)
+..+.+++++|+||||||+. +-.++..+-.. ..+++++-.+.|+-
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~----------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE----------DERIVTIEDPPELR 168 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----------TSEEEEEESSS-S-
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc----------ccceEEecccccee
Confidence 45578999999999999995 33344443221 13477777666553
No 368
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.00 E-value=6.1 Score=42.21 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=24.4
Q ss_pred CccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 434 GVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
...+|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4578999999988642 2345555666655566555543
No 369
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=88.93 E-value=1.5 Score=54.00 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=64.1
Q ss_pred CCeEEEEecchhHHHHHHHHHHhc----cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC-cccccCCCCccEEEE
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGEL----KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV-SARGVDYPDVTLVIQ 611 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~~----~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v-~~~GiDip~V~~VI~ 611 (747)
+.+++|.+||..-+...++.|++. ++.+..+++..+..++.+++..+.+|...|||+|.. +...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 358999999999999988877653 677889999999999999999999999999999963 445678889999884
No 370
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.92 E-value=0.67 Score=44.20 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=31.1
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
..-+++|+||.-.-+|......+..++..+....++++++..-..
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 356899999999988877777777777665443345555554433
No 371
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.71 E-value=4.7 Score=41.43 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=72.8
Q ss_pred cEEEEcCCCChhHHHH-----------------HHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 318 DVLAKAKTGTGKTVAF-----------------LLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~-----------------~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
-|||.|-.|+|||+|. ++|.+..+.... .......-+.|=+-+++...++.+.+.++-.
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~~~----~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~ 78 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLMLTL----ESRITKVAVVIDVRSREFFGDLEEVLDELKD 78 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHhhc----ccCCceEEEEEecccchhHHHHHHHHHHHHh
Confidence 4799999999999853 233333322111 1111222233334444555566666666544
Q ss_pred hCCCceEEEEeCCcchHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHH
Q 004518 381 YHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIA 460 (747)
Q Consensus 381 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~ 460 (747)
.. ++.+.+++-..+...-..+.....-.==.+..+.|++.+.........|....=+|||=-+. .-.+.++.+...+.
T Consensus 79 ~~-~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~l-s~~~Lr~~i~~~f~ 156 (286)
T COG1660 79 NG-DIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSEL-SVHELRERIRTRFL 156 (286)
T ss_pred cC-CCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccC-CHHHHHHHHHHHHc
Confidence 33 24455544333322222222110000003444557766665554445566677788887652 22345555555554
Q ss_pred H-CCCCCeEEEEecc
Q 004518 461 A-VPKQRQTLLFSAT 474 (747)
Q Consensus 461 ~-~~~~~q~il~SAT 474 (747)
. ......+.++|--
T Consensus 157 ~~~~~~~~v~v~SFG 171 (286)
T COG1660 157 GKEERTLTVTVESFG 171 (286)
T ss_pred cCCCcceEEEEEecc
Confidence 3 2233445555543
No 372
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.64 E-value=0.55 Score=53.90 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHH----HHCCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 301 KMTIVQEATLPV----LLKGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 301 ~~t~iQ~~~i~~----il~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
+|+.||.+.|.. |-.|+..|+..|||+|||+..+-.++.+|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 588999887755 45689999999999999997666666655
No 373
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.52 E-value=2.2 Score=47.16 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=33.0
Q ss_pred CccEEEEeCCccccCC-CcHHHHHHHHHHCCCC-CeEEEEeccCChHHHH
Q 004518 434 GVKVLVLDEADHLLDM-GFRKDIEKIIAAVPKQ-RQTLLFSATVPEEVRQ 481 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~-~f~~~l~~il~~~~~~-~q~il~SATl~~~v~~ 481 (747)
++++++||.++.+... .....+..+++.+... .|+++.|...|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 7899999999988754 3456666666666544 3666666666666543
No 374
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.50 E-value=1.3 Score=43.67 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHH-HCCCcEEEEcCCCChhHHH
Q 004518 301 KMTIVQEATLPVL-LKGKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 301 ~~t~iQ~~~i~~i-l~~~dvlv~a~TGsGKTl~ 332 (747)
.+++-|...+... ..+..++++|+||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4677787777654 4578899999999999994
No 375
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.49 E-value=1.2 Score=49.01 Aligned_cols=27 Identities=19% Similarity=0.067 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
.+..++|+||||||||+. +-.+++++.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 345689999999999995 334455554
No 376
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.47 E-value=11 Score=40.82 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=61.1
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHH-HHHHHHH---HHHHHhhhCCCceEEEE--eCC
Q 004518 320 LAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRE-LATQAAT---EASTLLKYHPSIGVQVV--IGG 393 (747)
Q Consensus 320 lv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~-La~Q~~~---~~~~l~~~~~~~~~~~~--~gg 393 (747)
++.++-|+|||.+..+.++..++..+. ...++++ ||.. +...+.. .+..+... .+.+... ...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--------GRRVIIA-STYRQARDIFGRFWKGIIELLPS--WFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T--TTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH--hcCcccccCCCC
Confidence 577899999999877777777664432 1335555 6654 4444333 23333222 1222111 111
Q ss_pred cchHHHHHHHhcCCCcEEEECchh--HHHHHHccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEE
Q 004518 394 TRLALEQKRMQANPCQILVATPGR--LRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471 (747)
Q Consensus 394 ~~~~~~~~~l~~~~~~IlV~Tpg~--Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~ 471 (747)
.-. ..++..|.+.+... -..-+. =..+.++|+||+-.+.+..+...+........... .+++
T Consensus 70 ~~~-------~~nG~~i~~~~~~~~~~~~~~~--------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 133 (384)
T PF03237_consen 70 KII-------LPNGSRIQFRGADSPDSGDNIR--------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYI 133 (384)
T ss_dssp EEE-------ETTS-EEEEES-----SHHHHH--------TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEE
T ss_pred cEE-------ecCceEEEEecccccccccccc--------ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEe
Confidence 100 02345566666331 111111 13678999999987765544444433333333222 2244
Q ss_pred eccC--ChHHHHHHHHHhc
Q 004518 472 SATV--PEEVRQICHIALK 488 (747)
Q Consensus 472 SATl--~~~v~~l~~~~~~ 488 (747)
|.|. ...+..+......
T Consensus 134 s~p~~~~~~~~~~~~~~~~ 152 (384)
T PF03237_consen 134 STPPNPGGWFYEIFQRNLD 152 (384)
T ss_dssp EE---SSSHHHHHHHHHHC
T ss_pred ecCCCCCCceeeeeehhhc
Confidence 4433 3344444444443
No 377
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.43 E-value=2.7 Score=44.00 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHhccccceeccCCCC
Q 004518 546 TAMVTRMVADLLGELKLNVREIHSRKP 572 (747)
Q Consensus 546 s~~~~~~l~~~L~~~~~~v~~lh~~l~ 572 (747)
|...++.+++.|++.+..+...|-.+.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 578889999999999998888888765
No 378
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.31 E-value=1.1 Score=48.34 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCC
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVP 476 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~ 476 (747)
....+++|+|++|.|.. .....+.+.+...+.... ++++++-+
T Consensus 111 ~~~~kV~iiEp~~~Ld~-~a~naLLk~LEep~~~~~-~Ilvth~~ 153 (325)
T PRK08699 111 RGGLRVILIHPAESMNL-QAANSLLKVLEEPPPQVV-FLLVSHAA 153 (325)
T ss_pred cCCceEEEEechhhCCH-HHHHHHHHHHHhCcCCCE-EEEEeCCh
Confidence 35688999999998764 455666667777665544 44444433
No 379
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.21 E-value=3.3 Score=48.65 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=24.4
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
+....+|||||+|.|.... ...+.+.+...+... ++++.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 3567899999999887532 233444455444343 4444444
No 380
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.16 E-value=2.2 Score=46.45 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChhHHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFLL 335 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~l 335 (747)
.++|++||.|+|||+.+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4799999999999996443
No 381
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.09 E-value=1.5 Score=48.61 Aligned_cols=45 Identities=24% Similarity=0.427 Sum_probs=28.2
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHH
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEV 479 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v 479 (747)
.+.+++||||||+|... ....+.+++..-+.. .++++.||-+..+
T Consensus 116 ~~~kViiIDead~m~~~-aanaLLk~LEep~~~-~~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTER-AANALLKAVEEPPPR-TVWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHH-HHHHHHHHhhcCCCC-CeEEEEECChHHC
Confidence 46789999999998743 334555556554444 4555666644443
No 382
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.05 E-value=2 Score=50.67 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
...+++||||||.|.... ...+.+.+..-+... ++++.++
T Consensus 120 ~~~KViIIDEad~Lt~~a-~naLLK~LEePp~~t-vfIL~t~ 159 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAA-FNALLKTLEEPPPRV-VFVLATT 159 (620)
T ss_pred CCceEEEEECccccCHHH-HHHHHHHHhcCCcCe-EEEEEeC
Confidence 467899999999886432 334445555433333 3344444
No 383
>PRK10436 hypothetical protein; Provisional
Probab=88.04 E-value=0.85 Score=51.59 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHH--CCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 303 TIVQEATLPVLL--KGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 303 t~iQ~~~i~~il--~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
.+.|.+.+..+. .+--+||+||||||||+. +..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 344555554443 334689999999999995 33455554
No 384
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.02 E-value=3.6 Score=46.09 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhHHHH
Q 004518 317 KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~ 333 (747)
..+++.||+|+|||++.
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999853
No 385
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.02 E-value=3.2 Score=40.54 Aligned_cols=53 Identities=17% Similarity=0.421 Sum_probs=39.8
Q ss_pred CccEEEEeCCccccCCCc--HHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHH
Q 004518 434 GVKVLVLDEADHLLDMGF--RKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIA 486 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~~~f--~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~ 486 (747)
.+++||+||.-..+..++ .+.+..++...|....+|+.--..|+++.+.+...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 689999999998776663 46677778877777777766666788877766543
No 386
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.97 E-value=3.8 Score=47.68 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=25.4
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
....++||||||.|... -...+.+.+..-|...-+ +|.+|-+.
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvf-IL~Tt~~~ 160 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVF-IFATTEFQ 160 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEE-EEECCChH
Confidence 45789999999987643 234455555554444434 44445443
No 387
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.66 E-value=1.3 Score=51.30 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=27.8
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEE
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~ 471 (747)
+++-+++|+||+-.-+|......+.+.+....+++-+|+.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5567889999998888777777777666665555544443
No 388
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.65 E-value=0.85 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.9
Q ss_pred HHHCCCcEEEEcCCCChhHHH
Q 004518 312 VLLKGKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 312 ~il~~~dvlv~a~TGsGKTl~ 332 (747)
++..+++++|+|+||||||+.
T Consensus 156 ~v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH
Confidence 445678999999999999993
No 389
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.60 E-value=2.4 Score=41.67 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=24.3
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
....+|||||+|.|... ....+...+...++.. +++|.++
T Consensus 95 ~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred CCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 56789999999998743 2344555555544333 4444444
No 390
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.59 E-value=5 Score=48.40 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=25.6
Q ss_pred cEEEEeCCccccCCCc----HHHHHHHHHHCCCCCeEEEEeccCChHH
Q 004518 436 KVLVLDEADHLLDMGF----RKDIEKIIAAVPKQRQTLLFSATVPEEV 479 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f----~~~l~~il~~~~~~~q~il~SATl~~~v 479 (747)
.+|+|||+|.+...+- ...+..++..+-...++.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 5899999999864331 2233333333223345667777766654
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.38 E-value=0.78 Score=36.44 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
+...++.+++|+|||+ ++-+++.++
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHHH
Confidence 3469999999999999 555555544
No 392
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.32 E-value=14 Score=39.66 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=72.2
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEc--CcHHHHHHHHH-HHHHHhhhCCCceEEEEeCCc
Q 004518 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC--PTRELATQAAT-EASTLLKYHPSIGVQVVIGGT 394 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~--Ptr~La~Q~~~-~~~~l~~~~~~~~~~~~~gg~ 394 (747)
.++++|-.|+|||+. +.=|.+.++.. +.+|++.+ -.|+.|.++.+ +.+++ ++.+..-..|.
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~~~---------g~~VllaA~DTFRAaAiEQL~~w~er~-----gv~vI~~~~G~ 204 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLKQQ---------GKSVLLAAGDTFRAAAIEQLEVWGERL-----GVPVISGKEGA 204 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHHHC---------CCeEEEEecchHHHHHHHHHHHHHHHh-----CCeEEccCCCC
Confidence 578999999999995 33333333322 22355544 34666655544 44443 33222211122
Q ss_pred chHHHHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC-CCcHHHHHHHHHHCCCCC------e
Q 004518 395 RLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQR------Q 467 (747)
Q Consensus 395 ~~~~~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~-~~f~~~l~~il~~~~~~~------q 467 (747)
+.. . ...+.++.. .-+++++|++|=|-||-+ .+....+.+|.+-+.+.. -
T Consensus 205 DpA-----------a-------VafDAi~~A-----kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~ 261 (340)
T COG0552 205 DPA-----------A-------VAFDAIQAA-----KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEI 261 (340)
T ss_pred CcH-----------H-------HHHHHHHHH-----HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceE
Confidence 211 1 234555442 245789999999999875 446677888877766543 3
Q ss_pred EEEEeccCChHHHHHHHH
Q 004518 468 TLLFSATVPEEVRQICHI 485 (747)
Q Consensus 468 ~il~SATl~~~v~~l~~~ 485 (747)
++.+-||...+--+-++.
T Consensus 262 llvlDAttGqnal~QAk~ 279 (340)
T COG0552 262 LLVLDATTGQNALSQAKI 279 (340)
T ss_pred EEEEEcccChhHHHHHHH
Confidence 455589986554443433
No 393
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.23 E-value=2.2 Score=49.89 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=29.4
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEE
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~ 471 (747)
+++-.++|+|||-.-+|......+...+..+.+.+.+++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 4556899999999999888777777777665555544443
No 394
>PRK09087 hypothetical protein; Validated
Probab=87.19 E-value=2.1 Score=43.75 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=24.6
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
.+|+||++|.+.. -...+..+++.+......++++++.++
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p 128 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWP 128 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCCh
Confidence 3799999997642 245566666666554445566665433
No 395
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.16 E-value=2.5 Score=44.10 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
.+.-++|+|++|+|||+..+..+.+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457789999999999985444344433
No 396
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=87.04 E-value=0.38 Score=60.89 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=74.0
Q ss_pred eEEEEecchhHHHHHHHHHHhcc-ccceeccCCCC-----------HHHHHHHHHHHhcCCccEEEeeCCcccccCCCCc
Q 004518 539 KVLVFCTTAMVTRMVADLLGELK-LNVREIHSRKP-----------QSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDV 606 (747)
Q Consensus 539 k~LVF~~s~~~~~~l~~~L~~~~-~~v~~lh~~l~-----------~~eR~~v~~~F~~g~~~VLvaT~v~~~GiDip~V 606 (747)
..|+|++....+..+...++... ..+..+.|.+. ...+..++..|......+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45899988877777777766542 12222333322 2247788999999999999999999999999999
Q ss_pred cEEEEeCCCCChhhHHHhhccCCCCC
Q 004518 607 TLVIQVGLPSDREQYIHRLGRTGRKG 632 (747)
Q Consensus 607 ~~VI~~d~p~s~~~y~Qr~GRagR~G 632 (747)
+.|+.++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999986654
No 397
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.95 E-value=2 Score=40.37 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=28.8
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
+.+-+++|+||.-.-+|......+..++..+. .+++++..
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 34568999999998888777777777777662 25555544
No 398
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.67 E-value=0.5 Score=46.07 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=27.7
Q ss_pred cCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC
Q 004518 405 ANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD 448 (747)
Q Consensus 405 ~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~ 448 (747)
...++|||+++..|++-......... ..+-.+|||||||.|.+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~-~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGI-DLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccc-cccCcEEEEecccchHH
Confidence 44589999999988765433211101 23457999999999875
No 399
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.62 E-value=9.6 Score=41.81 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCC-CCCeEEEEeccCChHH
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVP-KQRQTLLFSATVPEEV 479 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~-~~~q~il~SATl~~~v 479 (747)
....+|.+||.|- .|.+-.-.+..++..+- ...-+|+.|-+.|.++
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 3567899999983 33443444555555443 3455666666666553
No 400
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.44 E-value=0.94 Score=47.38 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=32.5
Q ss_pred CcCCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCC
Q 004518 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSP 345 (747)
Q Consensus 277 ~~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~ 345 (747)
...+|+++++.+-+.+.+. ...-=++|.||||||||+. +..++.++-++.
T Consensus 104 ~i~~~e~LglP~i~~~~~~------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 104 KIPTLEELGLPPIVRELAE------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred cCCCHHHcCCCHHHHHHHh------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 3456777777666544221 1122488999999999986 666777775544
No 401
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.35 E-value=2.8 Score=40.63 Aligned_cols=42 Identities=31% Similarity=0.337 Sum_probs=31.4
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
+.+-+++++||--.-+|......+..++..+... .+++++..
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh 153 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAH 153 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 3567899999999888888888888888776544 45666543
No 402
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=86.31 E-value=1.8 Score=42.11 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=31.2
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
+.+-+++++||.=.-+|......+..++..+.....+++++..
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4577899999999988888777777777666443345555544
No 403
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.08 E-value=1.9 Score=51.23 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=26.1
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
.....++||||||.|... -...+.+.+..-|... ++++.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~t-ifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHV-IFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCce-EEEEEcCChh
Confidence 357889999999987643 2334445555544444 3444445443
No 404
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.04 E-value=4 Score=46.79 Aligned_cols=52 Identities=23% Similarity=0.164 Sum_probs=35.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.|..++|.|++|+|||+..+..+.+.+. . +-++++++ .-+-..|+...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-~----------ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA-N----------KERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-C----------CCeEEEEE-eeCCHHHHHHHHHHc
Confidence 3467999999999999964444444332 2 12377766 567777888887766
No 405
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=86.04 E-value=4.3 Score=39.53 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=30.0
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
+.+-+++|+||.-.-+|......+..++..+... .+++++..
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh 155 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITH 155 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567899999999888877777777777666443 35555433
No 406
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=86.02 E-value=3.8 Score=41.96 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=20.6
Q ss_pred HCCCcEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
..|.-++|+|++|+|||...+--+++.+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~ 39 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34677899999999999864444444443
No 407
>PHA00729 NTP-binding motif containing protein
Probab=85.99 E-value=5.6 Score=40.42 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=37.4
Q ss_pred cEEEECchhHHHHHHccccccccCCCccEEEEeCCccccCCC-cH----HHHHHHHHHCCCCCeEEEEeccCChHHHHHH
Q 004518 409 QILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMG-FR----KDIEKIIAAVPKQRQTLLFSATVPEEVRQIC 483 (747)
Q Consensus 409 ~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~~~-f~----~~l~~il~~~~~~~q~il~SATl~~~v~~l~ 483 (747)
..++.+...|++.+.... .....++++|||++-.-+... +. .....+...+....+++.+...-+.++...+
T Consensus 60 ~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred cEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence 455666666666664321 112346789999953211110 11 1222334444445567777777666665544
Q ss_pred HH
Q 004518 484 HI 485 (747)
Q Consensus 484 ~~ 485 (747)
+.
T Consensus 137 r~ 138 (226)
T PHA00729 137 RE 138 (226)
T ss_pred Hh
Confidence 43
No 408
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.95 E-value=1.5 Score=42.83 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=34.7
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCC-CeEEEEeccCChHH
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ-RQTLLFSATVPEEV 479 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~-~q~il~SATl~~~v 479 (747)
+.+-+++|+||--.-+|......+..++..+... ..+++++..-...+
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4567899999999988888778887777766544 35666766644433
No 409
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.94 E-value=1.8 Score=44.93 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhHHHH
Q 004518 317 KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~ 333 (747)
.++++.||.|.|||+.+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 57999999999999853
No 410
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=85.92 E-value=3.5 Score=40.06 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=32.9
Q ss_pred CCccEEEEeCCccccCCCc--HHHHHHHHHHCCCCCeEEEEeccCChHHHHHH
Q 004518 433 MGVKVLVLDEADHLLDMGF--RKDIEKIIAAVPKQRQTLLFSATVPEEVRQIC 483 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f--~~~l~~il~~~~~~~q~il~SATl~~~v~~l~ 483 (747)
..+++||+||+-..++.++ ...+..++...|...-+|+.--..|+++...+
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 4689999999988777664 45677778877777777776667777765544
No 411
>PRK05973 replicative DNA helicase; Provisional
Probab=85.84 E-value=1.4 Score=45.26 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHH---------HHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCC
Q 004518 283 QCSISALSLKGIKDAGYEKMTIVQEA---------TLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRR 353 (747)
Q Consensus 283 ~l~l~~~l~~~l~~~g~~~~t~iQ~~---------~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 353 (747)
.+++++-+-+.....||..-.-+... +.--+..|.-++|.|++|+|||+..+-.+.+.+.+ +
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-G-------- 92 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-G-------- 92 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C--------
Confidence 34455555555555666543332222 23334456779999999999998644444444322 1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 354 PPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 354 ~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
..++|+.- -+-..|+.+.+..+
T Consensus 93 --e~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 93 --RTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred --CeEEEEEE-eCCHHHHHHHHHHc
Confidence 12666643 33356666666554
No 412
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=85.80 E-value=1.2 Score=42.94 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
+.+-+++++||.-.-+|......+..++..+...-.+++++..-
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34568999999998888877777877776664434466665443
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=85.79 E-value=11 Score=39.68 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=18.4
Q ss_pred HHHHHHHCC---CcEEEEcCCCChhHHH
Q 004518 308 ATLPVLLKG---KDVLAKAKTGTGKTVA 332 (747)
Q Consensus 308 ~~i~~il~~---~dvlv~a~TGsGKTl~ 332 (747)
..++.+... +++++.|++|+|||+.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 334455433 5889999999999993
No 414
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.77 E-value=1 Score=52.60 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHC--CCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 303 TIVQEATLPVLLK--GKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 303 t~iQ~~~i~~il~--~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
.+-|.+.+..+.. +--++++||||||||+. +..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 3455555554443 34578999999999986 33455554
No 415
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=85.72 E-value=2.2 Score=43.84 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=61.9
Q ss_pred cccceeccCCCCHHHHHHHHHHHhcCC----ccEEEeeCCcccccCCCCccEEEEeCCCCChhhHHHhhccCC-CCCCcc
Q 004518 561 KLNVREIHSRKPQSYRTRVSDEFRKSK----GLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTG-RKGKEG 635 (747)
Q Consensus 561 ~~~v~~lh~~l~~~eR~~v~~~F~~g~----~~VLvaT~v~~~GiDip~V~~VI~~d~p~s~~~y~Qr~GRag-R~G~~G 635 (747)
++.+..++++.+... -.|.++. ..|+|.=+.++||+++++.....+..-+...+++.||.---| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 577777876655433 3444443 789999999999999999999999999999999999864444 445567
Q ss_pred eEEEEeCcchHHHHH
Q 004518 636 QGILLLAPWEEFFLS 650 (747)
Q Consensus 636 ~~~~l~s~~e~~~l~ 650 (747)
.|.++.++.-...+.
T Consensus 185 l~Ri~~~~~l~~~f~ 199 (239)
T PF10593_consen 185 LCRIYMPEELYDWFR 199 (239)
T ss_pred ceEEecCHHHHHHHH
Confidence 788877654444443
No 416
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.71 E-value=1.3 Score=55.99 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLL 379 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 379 (747)
.+++++|.|..|||||.+...-++..+++.+.. ..-.+|||+.|+..|..+..++.+-.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~------~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPL------DVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCC------ChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 467999999999999998777777777765311 12349999999999999988776544
No 417
>PRK10689 transcription-repair coupling factor; Provisional
Probab=85.67 E-value=2.8 Score=52.93 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=62.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHhc----cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC-CcccccCCCCccEEEE
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGEL----KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD-VSARGVDYPDVTLVIQ 611 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~~----~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~-v~~~GiDip~V~~VI~ 611 (747)
+.+++|.+||..-+..+++.|++. ++.+..+++..+..++..++....+|...|||+|. .+...+.+.++.+||.
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 458999999999999888877653 46788899999999999999999999999999996 3445567778888873
No 418
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.40 E-value=8.4 Score=42.31 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChhHHHH
Q 004518 317 KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~ 333 (747)
..++++||.|+|||+..
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999853
No 419
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=85.39 E-value=4 Score=41.42 Aligned_cols=51 Identities=20% Similarity=0.097 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
+..+++.|++|+|||...+-.+.+.+.+ + -.++++.- .+...++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-g----------~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-G----------EKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-C----------CeEEEEEC-CCCHHHHHHHHHHc
Confidence 5678999999999997533334443322 1 22666654 44566666666554
No 420
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.39 E-value=1.6 Score=46.84 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHH-HHHCCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 299 YEKMTIVQEATLP-VLLKGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 299 ~~~~t~iQ~~~i~-~il~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
...+++.|..-+. ++.+++++++||+||||||+. +.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC
Confidence 3456777766554 455679999999999999984 44444443
No 421
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.38 E-value=1.2 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
.+.-++|+||||||||+. +-.++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456799999999999994 23334444
No 422
>PF14516 AAA_35: AAA-like domain
Probab=85.18 E-value=1.1 Score=48.74 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHC-CCcEEEEcCCCChhHHHHHHHHHHHHHcC
Q 004518 304 IVQEATLPVLLK-GKDVLAKAKTGTGKTVAFLLPSIEVVIKS 344 (747)
Q Consensus 304 ~iQ~~~i~~il~-~~dvlv~a~TGsGKTl~~~lpil~~l~~~ 344 (747)
|+.++++..+.+ |.-+.|.||=.+|||.. +.-+++.+.+.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~~ 58 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQQ 58 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHHC
Confidence 488999999888 89999999999999985 44555666443
No 423
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=3.3 Score=47.32 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=30.3
Q ss_pred CccEEEEeCCccccC-------CCcHHHHHHHHHH---CCCCCeEEEEeccCChHH
Q 004518 434 GVKVLVLDEADHLLD-------MGFRKDIEKIIAA---VPKQRQTLLFSATVPEEV 479 (747)
Q Consensus 434 ~i~~vIiDEAh~ll~-------~~f~~~l~~il~~---~~~~~q~il~SATl~~~v 479 (747)
.-++|.+||.|.|.- +.-...+.+++.. +...+++.++.||..+++
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 457899999998763 1223344444443 345678999999987664
No 424
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=84.87 E-value=1.5 Score=45.95 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHC-C-CcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 303 TIVQEATLPVLLK-G-KDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 303 t~iQ~~~i~~il~-~-~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
.+-|.+.+..++. . ..++|+|+||||||+. +-.++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 4556666655443 3 4589999999999995 23344444
No 425
>PF12846 AAA_10: AAA-like domain
Probab=84.85 E-value=1.6 Score=46.06 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELAT 369 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~ 369 (747)
+.+++|+|+||+|||+... .++..++..+ ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g----------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG----------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC----------CCEEEEcCCchHHH
Confidence 4679999999999998755 4555554433 33777777655543
No 426
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=84.74 E-value=3.2 Score=43.19 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=25.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcC
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICP 363 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~P 363 (747)
.+.-+++.|.||.|||...+--+.+.+...+ ..|++++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~----------~~vly~Sl 56 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG----------YPVLYFSL 56 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS----------SEEEEEES
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC----------CeEEEEcC
Confidence 3456899999999999865554555554322 23777765
No 427
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=84.71 E-value=1.1 Score=51.20 Aligned_cols=49 Identities=29% Similarity=0.385 Sum_probs=37.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.++++.|+||||||..+.+|.+-. ..+ -++|+=|--+|+.......++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~~-----------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YPG-----------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--ccC-----------CEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999996532 111 2888899989987777655554
No 428
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=84.67 E-value=0.8 Score=50.76 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=34.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 004518 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAST 377 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 377 (747)
+++++|+||||||.++++|.+-.. + ..++|+=|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---~----------~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---P----------GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---C----------CCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999888854321 1 2288889988998776655443
No 429
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.66 E-value=4.3 Score=47.52 Aligned_cols=41 Identities=32% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEec
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSA 473 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SA 473 (747)
+++-.++|+|||-.-+|..-...+...+..+..++ +++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC-eEEEEe
Confidence 56778999999999998877777888887777664 555444
No 430
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.50 E-value=14 Score=42.07 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=67.0
Q ss_pred CeEEEEecchhHHHHHHHHHHhc----cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC-----Cccc-ccCCCCcc
Q 004518 538 YKVLVFCTTAMVTRMVADLLGEL----KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD-----VSAR-GVDYPDVT 607 (747)
Q Consensus 538 ~k~LVF~~s~~~~~~l~~~L~~~----~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~-----v~~~-GiDip~V~ 607 (747)
-.+||.+||++.+..+...+... .+...+++|+.+...+.+-++ .-+.|+|||. .+.. .+++..|+
T Consensus 166 P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v~ 241 (519)
T KOG0331|consen 166 PIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRVT 241 (519)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCcccccee
Confidence 36999999999999998887765 456889999999877766654 2458999994 4444 48888999
Q ss_pred EEE--------EeCCCCChhhHHHhhccCCC
Q 004518 608 LVI--------QVGLPSDREQYIHRLGRTGR 630 (747)
Q Consensus 608 ~VI--------~~d~p~s~~~y~Qr~GRagR 630 (747)
|+| +.++-..+...++.++|.-|
T Consensus 242 ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 242 YLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred EEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 998 34444456677787777665
No 431
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=84.49 E-value=3 Score=40.87 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=33.9
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHH
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEV 479 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v 479 (747)
+.+-+++++||.-.-+|......+..++..+.....+++++..-...+
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 456789999999998988877778777776643334666665544333
No 432
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.32 E-value=2.5 Score=45.98 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHH-CCCcEEEEcCCCChhHHH
Q 004518 291 LKGIKDAGYEKMTIVQEATLPVLL-KGKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 291 ~~~l~~~g~~~~t~iQ~~~i~~il-~~~dvlv~a~TGsGKTl~ 332 (747)
+..+...|+ +++.+...+..+. .+.+++++|+||+|||+.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 444445554 5567777776554 467999999999999983
No 433
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.20 E-value=34 Score=39.17 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchH---HHHH
Q 004518 325 TGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLA---LEQK 401 (747)
Q Consensus 325 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~---~~~~ 401 (747)
.++||+..-++.+.+.+-.. . .|.+||-+-+.+-|.|++..+. .++++.+.+++|..... ....
T Consensus 366 vF~gse~~K~lA~rq~v~~g--------~-~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG--------F-KPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred eeeecchhHHHHHHHHHhcc--------C-CCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHH
Confidence 36777777666666655322 2 2337777778888988888775 34688999999885432 2335
Q ss_pred HHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCc
Q 004518 402 RMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEAD 444 (747)
Q Consensus 402 ~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh 444 (747)
++..+...|+||| +.|.++ ..+.++.+||.+..-
T Consensus 433 ~FR~g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 6667788999999 677777 557799999997664
No 434
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=84.19 E-value=7 Score=43.92 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=20.2
Q ss_pred HHCCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
+..|.-+++.|++|+|||...+--+.+..
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a 219 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVA 219 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34567789999999999986443333443
No 435
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.12 E-value=0.77 Score=48.29 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=18.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVI 342 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~ 342 (747)
...++++.||||||||+.++ .|..++
T Consensus 96 ~KSNILLiGPTGsGKTlLAq--TLAk~L 121 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ--TLAKIL 121 (408)
T ss_pred eeccEEEECCCCCcHHHHHH--HHHHHh
Confidence 34579999999999999544 334444
No 436
>PRK06904 replicative DNA helicase; Validated
Probab=84.07 E-value=11 Score=43.05 Aligned_cols=53 Identities=21% Similarity=0.119 Sum_probs=30.0
Q ss_pred HHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
+..|.=+|+.|.+|.|||...+--+.+.+.+.+ ..|+|.+. -.-..|+..++.
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g----------~~Vl~fSl-EMs~~ql~~Rll 270 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASE----------KPVLVFSL-EMPAEQIMMRML 270 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcC----------CeEEEEec-cCCHHHHHHHHH
Confidence 445567889999999999854333333332221 12666543 344555555443
No 437
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.05 E-value=3.8 Score=46.83 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
.....++||||||.|....+ ..+...+...+... ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe-EEEEEEC
Confidence 35678999999998864332 33444444444333 4444444
No 438
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=84.00 E-value=11 Score=37.48 Aligned_cols=46 Identities=26% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHC-CC--CCeEEEEeccCChH
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAV-PK--QRQTLLFSATVPEE 478 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~-~~--~~q~il~SATl~~~ 478 (747)
.+-+++|+||...-++......+..++... .. ..+++++|.--...
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~ 178 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG 178 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence 567899999999988877777677666554 22 35678887654433
No 439
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=83.78 E-value=2.4 Score=50.52 Aligned_cols=71 Identities=25% Similarity=0.233 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 301 KMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 301 ~~t~iQ~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
.+++-|++++... ...++|.|.-|||||.+..--+ .+++...... +-.+++++=|+-+|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ri-a~li~~~~v~------p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERI-AYLIAAGGVD------PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHH-HHHHHcCCcC------hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4788999998765 5568888999999999744433 4444443222 22389999999999999999988865
No 440
>PRK13764 ATPase; Provisional
Probab=83.69 E-value=2.1 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=19.8
Q ss_pred HCCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
...++++++|+||||||+. +-.++..+
T Consensus 255 ~~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred hcCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3467899999999999984 33344444
No 441
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.66 E-value=4.3 Score=45.98 Aligned_cols=52 Identities=25% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.+.-+++.|++|+|||+..+..+ ..+.+. +.+++++..- +...|+...+.++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a-~~~a~~----------g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVA-CQLAKN----------QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHHHhc----------CCcEEEEECc-CCHHHHHHHHHHc
Confidence 45778999999999998644333 333221 1238887753 4456666655544
No 442
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=83.62 E-value=12 Score=36.49 Aligned_cols=51 Identities=20% Similarity=0.393 Sum_probs=39.0
Q ss_pred CCccEEEEeCCccccCCCc--HHHHHHHHHHCCCCCeEEEEeccCChHHHHHH
Q 004518 433 MGVKVLVLDEADHLLDMGF--RKDIEKIIAAVPKQRQTLLFSATVPEEVRQIC 483 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f--~~~l~~il~~~~~~~q~il~SATl~~~v~~l~ 483 (747)
..+++||+||+-..++.++ .+.+..++...|...-+|+.--..|+++.+.+
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 4689999999998877774 46677788888888777777777787766544
No 443
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.31 E-value=2.5 Score=41.05 Aligned_cols=43 Identities=28% Similarity=0.433 Sum_probs=31.6
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
..+-+++++||.-.-+|......+..++..+..+-.+++++..
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 3466899999999999988888888887776544345555544
No 444
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=83.31 E-value=2.6 Score=47.34 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=47.6
Q ss_pred eEEEEecchhHHHHHHHHHHhc----cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 539 KVLVFCTTAMVTRMVADLLGEL----KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 539 k~LVF~~s~~~~~~l~~~L~~~----~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
-.|||.||++-+..+.+.|... ++.+..|.|+|+...+.+++.+ .-.|+|||.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3799999999999999998764 8899999999999999999987 567999995
No 445
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=82.93 E-value=3.8 Score=44.03 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
.++-+.|.||+|+|||+..+ +++...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL-~~~~~~ 79 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLAL-HAIAEA 79 (321)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHH
Confidence 45678999999999998643 333333
No 446
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.87 E-value=1.5 Score=50.07 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHCC-C-cEEEEcCCCChhHHHHHHHHHHHH
Q 004518 303 TIVQEATLPVLLKG-K-DVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 303 t~iQ~~~i~~il~~-~-dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
.+-|.+.+..+... + -++++||||||||+. +..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 44555555555443 3 478999999999995 22244443
No 447
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=82.81 E-value=5.2 Score=42.99 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHCC--CcEEEEcCCCChhHHHH
Q 004518 312 VLLKG--KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 312 ~il~~--~dvlv~a~TGsGKTl~~ 333 (747)
.|.++ ..+|++||.|+|||..+
T Consensus 156 ~ieq~~ipSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 156 LIEQNRIPSMILWGPPGTGKTTLA 179 (554)
T ss_pred HHHcCCCCceEEecCCCCchHHHH
Confidence 34445 46999999999999843
No 448
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=82.76 E-value=2.6 Score=46.43 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=17.7
Q ss_pred HHCCCcEEEEcCCCChhHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~ 332 (747)
+-.|+.++|.|++|+|||+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 45789999999999999985
No 449
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=82.74 E-value=12 Score=43.11 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=81.3
Q ss_pred HCCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhhCCCceEEEEeC
Q 004518 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL-LKYHPSIGVQVVIG 392 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l-~~~~~~~~~~~~~g 392 (747)
++.+-.+.--|--.|||.. ++|++..++.. ..+.++.+++.-|-.+.-+.+++..- .++++.-.+....+
T Consensus 200 FKQkaTVFLVPRRHGKTWf-~VpiIsllL~s--------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~ 270 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTWF-IIPIISFLLKN--------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD 270 (668)
T ss_pred hhccceEEEecccCCceeh-HHHHHHHHHHh--------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC
Confidence 4556677778999999984 88888888763 23678999999999888877766533 33343222211111
Q ss_pred CcchHHHHHHHhcCCCcEEEECchhHHHH--H--HccccccccCCCccEEEEeCCccccCCCcHHHHHHHHHHC-CCCCe
Q 004518 393 GTRLALEQKRMQANPCQILVATPGRLRDH--I--ENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAV-PKQRQ 467 (747)
Q Consensus 393 g~~~~~~~~~l~~~~~~IlV~Tpg~Ll~~--l--~~~~~~~~~L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~-~~~~q 467 (747)
-.|.+.-||.=-.. + .+.. ...=.++.+++|||||=+.- ..+..|+..+ .++++
T Consensus 271 ---------------~tI~~s~pg~Kst~~fasc~n~N--siRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~K 329 (668)
T PHA03372 271 ---------------NVISIDHRGAKSTALFASCYNTN--SIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTK 329 (668)
T ss_pred ---------------cEEEEecCCCcceeeehhhccCc--cccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCce
Confidence 13444444321000 0 1111 12335789999999996542 3445555544 35788
Q ss_pred EEEEeccCC
Q 004518 468 TLLFSATVP 476 (747)
Q Consensus 468 ~il~SATl~ 476 (747)
+|..|.|-+
T Consensus 330 iIfISS~Ns 338 (668)
T PHA03372 330 IIFISSTNT 338 (668)
T ss_pred EEEEeCCCC
Confidence 999998864
No 450
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.70 E-value=6.2 Score=45.98 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=24.7
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
.....++||||+|.|.... ...+.+.+...| ..-+++|.+|-
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp-~~~vfI~~tte 158 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPP-PYIVFIFATTE 158 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCC-CCEEEEEecCC
Confidence 3578899999999887432 233444444433 33344454453
No 451
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=82.57 E-value=3.9 Score=44.34 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
....+++||||||.|... -.+.+.+.+..-|....+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEE-EeC
Confidence 356789999999998743 34456666666555554554 444
No 452
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=82.56 E-value=2.8 Score=41.49 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=44.9
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHH
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHI 485 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~ 485 (747)
.++-+++|+||.-.=+|......+..++..+...-+.++||.-.-.+++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 456789999999988888788888999999988888999998888887776643
No 453
>PRK09354 recA recombinase A; Provisional
Probab=82.27 E-value=5.4 Score=43.33 Aligned_cols=43 Identities=23% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELA 368 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 368 (747)
.++-+.|.||+|||||+..+..+.+.. +. +..++++-.--.+-
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~~----------G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-KA----------GGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc----------CCcEEEECCccchH
Confidence 356788999999999986444444433 21 23377776654444
No 454
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.17 E-value=5.2 Score=44.41 Aligned_cols=16 Identities=50% Similarity=0.613 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhHHH
Q 004518 317 KDVLAKAKTGTGKTVA 332 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~ 332 (747)
+.+++.||+|+|||++
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 6799999999999985
No 455
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=82.14 E-value=1.3 Score=51.79 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=38.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
+++++.||||||||..+++|.+... . .-++|+=|--|+....+...++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~--~-----------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW--E-----------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC--C-----------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 5799999999999999999966542 1 12888899999998887766654
No 456
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=82.12 E-value=7.5 Score=38.44 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=51.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhc----cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC-----cc-cccCCCC
Q 004518 536 PEYKVLVFCTTAMVTRMVADLLGEL----KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV-----SA-RGVDYPD 605 (747)
Q Consensus 536 ~~~k~LVF~~s~~~~~~l~~~L~~~----~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v-----~~-~GiDip~ 605 (747)
...++||.+|+...+...+..+... ++.+..++|+.+..+....+. +...|+|+|.. +. .-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3458999999999888877666554 677888999988766554433 66789999952 22 2256677
Q ss_pred ccEEEE
Q 004518 606 VTLVIQ 611 (747)
Q Consensus 606 V~~VI~ 611 (747)
+++||.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 888773
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=82.07 E-value=2.2 Score=45.82 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.3
Q ss_pred HHCCCcEEEEcCCCChhHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~ 332 (747)
+..+.+++++|+||||||+.
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44678999999999999993
No 458
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.96 E-value=4.3 Score=39.70 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.7
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCC-eEEEEeccCChH
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQR-QTLLFSATVPEE 478 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~-q~il~SATl~~~ 478 (747)
.+-+++++||.-.-+|......+..++..+.... .+++++..-...
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 4568999999998888777777777766553332 456665554333
No 459
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.94 E-value=4.4 Score=45.57 Aligned_cols=48 Identities=27% Similarity=0.482 Sum_probs=30.8
Q ss_pred CCccEEEEeCCccccCCC-----cHHHHHH----HHHHCCC-CCeEEEEeccCChHHH
Q 004518 433 MGVKVLVLDEADHLLDMG-----FRKDIEK----IIAAVPK-QRQTLLFSATVPEEVR 480 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~-----f~~~l~~----il~~~~~-~~q~il~SATl~~~v~ 480 (747)
+.+++||+|+..++++|. |-..+.+ ++...|+ .+++++|..|-..++-
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL 654 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL 654 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHH
Confidence 567899999999999865 4333332 2334443 4677777777554443
No 460
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.88 E-value=8.9 Score=45.22 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=26.9
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccC
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATV 475 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl 475 (747)
....+++||||||.|... -...+.+++...|... +++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~t-ifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYA-IFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCe-EEEEEeCC
Confidence 457899999999998743 3344555666555444 44555553
No 461
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=81.86 E-value=5.5 Score=48.21 Aligned_cols=16 Identities=50% Similarity=0.588 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChhHHH
Q 004518 317 KDVLAKAKTGTGKTVA 332 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~ 332 (747)
+.+++.||+|+|||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999984
No 462
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=81.82 E-value=13 Score=46.13 Aligned_cols=130 Identities=23% Similarity=0.240 Sum_probs=92.1
Q ss_pred HHHHHHHHHCCCcEEEEcCCCChhHHHHHHHHHHH--HHcCCCCCCCC--------------------CCCCeEEEEEcC
Q 004518 306 QEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEV--VIKSPPVDRDQ--------------------RRPPILVLVICP 363 (747)
Q Consensus 306 Q~~~i~~il~~~dvlv~a~TGsGKTl~~~lpil~~--l~~~~~~~~~~--------------------~~~~~~vLIl~P 363 (747)
|++-+..+..+-||+--..|=-=.|+-..+.-+.. ++.+++..+-. -..+++|-+|.|
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~N 811 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHN 811 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEec
Confidence 78888888888888887778777777332222221 23333322211 112567999999
Q ss_pred cHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHH---HHHHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEE
Q 004518 364 TRELATQAATEASTLLKYHPSIGVQVVIGGTRLAL---EQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVL 440 (747)
Q Consensus 364 tr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIi 440 (747)
..+-..++++.++++ .|..++.+.+|-+.-.. -......+.+||+||| ..++.+ ..+.+...+||
T Consensus 812 rV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----TIIEtG----IDIPnANTiII 879 (1139)
T COG1197 812 RVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----TIIETG----IDIPNANTIII 879 (1139)
T ss_pred chhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----eeeecC----cCCCCCceEEE
Confidence 999999999988887 56889999998876443 2345567889999999 456666 55778999999
Q ss_pred eCCcccc
Q 004518 441 DEADHLL 447 (747)
Q Consensus 441 DEAh~ll 447 (747)
+-||++.
T Consensus 880 e~AD~fG 886 (1139)
T COG1197 880 ERADKFG 886 (1139)
T ss_pred ecccccc
Confidence 9999865
No 463
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.79 E-value=5.1 Score=47.45 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=52.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHhc-----cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeC-----Cccc-ccCCCC
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGEL-----KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD-----VSAR-GVDYPD 605 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~-----v~~~-GiDip~ 605 (747)
..++||.|||+.-+..++..|... ++.+..+||+.+...+.+.+ .....|||+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 348999999999999988776653 67889999998876655544 24568999994 3333 477888
Q ss_pred ccEEE
Q 004518 606 VTLVI 610 (747)
Q Consensus 606 V~~VI 610 (747)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88887
No 464
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=81.72 E-value=8.7 Score=41.30 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=27.0
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEec
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSA 473 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SA 473 (747)
....+++|||+||.|... -...+.+++..-| +..+|++|.
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 357899999999998643 3455666776666 554444443
No 465
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=81.59 E-value=19 Score=43.92 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChhHHH
Q 004518 316 GKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~ 332 (747)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35699999999999985
No 466
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=81.30 E-value=9.6 Score=46.16 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHH
Q 004518 316 GKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~ 332 (747)
++.+++.||+|+|||+.
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 47899999999999984
No 467
>PRK14701 reverse gyrase; Provisional
Probab=81.26 E-value=5 Score=52.33 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=52.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHhc------cccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCC
Q 004518 537 EYKVLVFCTTAMVTRMVADLLGEL------KLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 537 ~~k~LVF~~s~~~~~~l~~~L~~~------~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v 596 (747)
+.++||.+||+.-+..+++.|+.. ++.+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 458999999999999999888763 466788999999999999999999999999999964
No 468
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=81.20 E-value=5.4 Score=42.94 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHH
Q 004518 316 GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELA 368 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 368 (747)
++-+.|.||.|+|||+..+..+.+.. +. +..++++.+--.+-
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~-~~----------g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ-KL----------GGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-Hc----------CCCEEEECccccHH
Confidence 56789999999999986443333333 22 22377777654444
No 469
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=81.11 E-value=63 Score=34.96 Aligned_cols=225 Identities=16% Similarity=0.227 Sum_probs=107.7
Q ss_pred CChhHHHHHHHHHHHHHcCCCC----CCCCCCC-CeEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHHH
Q 004518 326 GTGKTVAFLLPSIEVVIKSPPV----DRDQRRP-PILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQ 400 (747)
Q Consensus 326 GsGKTl~~~lpil~~l~~~~~~----~~~~~~~-~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~ 400 (747)
|+|||=+ .+.++..+.+.+.. .+.-+.. ....+++.+.. .+.++-++-..+....+ +.++++......-.
T Consensus 47 GTGKTP~-v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~---~~V~V~~dR~~~~~ 121 (326)
T PF02606_consen 47 GTGKTPL-VIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLP---VPVIVGPDRVAAAR 121 (326)
T ss_pred CCCchHH-HHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcC---CcEEEeCcHHHHHH
Confidence 8999975 44455555554311 1111111 11255666665 56666666666666554 45556555444333
Q ss_pred HHHhcCCCcEEEECchhHHHHHHccccccccCCCccEEEEeCCccccC-----CC-cHHHHHHHHHHCCCCCeEEEEecc
Q 004518 401 KRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLD-----MG-FRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 401 ~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L~~i~~vIiDEAh~ll~-----~~-f~~~l~~il~~~~~~~q~il~SAT 474 (747)
..+...+++|+|+-.|. ++. ..-.++++|++|-.+-..+ .| +++-+.. +. ..-+++++..
T Consensus 122 ~~~~~~~~dviilDDGf-----Qh~----~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~----l~-rAD~vi~~~~ 187 (326)
T PF02606_consen 122 AALKEFPADVIILDDGF-----QHR----RLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSA----LK-RADAVIVTGC 187 (326)
T ss_pred HHHHHCCCCEEEEcCCc-----ccc----cccCCcEEEEEeCCCCCcCCccCCCCcccCChhH----hC-cccEEEEcCC
Confidence 33333458999987662 211 1125789999997553222 22 2222221 11 1124555443
Q ss_pred CChHHHHHHHHHhcCCceeeeeccCCccccccceeEEEEecCcccchHHHHHHHHHHhhcCCCCeEEEEecchhHHHHHH
Q 004518 475 VPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVA 554 (747)
Q Consensus 475 l~~~v~~l~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~LVF~~s~~~~~~l~ 554 (747)
............ ...+++.. .+..... .... . .....-.+.+++.|| ....-+.+.
T Consensus 188 ~~~~~~~~~~~~--~~~p~~~~----------~~~~~~~-~~~~-~---------~~~~~l~~~~v~a~s-GIg~P~~F~ 243 (326)
T PF02606_consen 188 DASDPAIEKAIR--PGKPIFSA----------RLKPEGL-RNLN-T---------GSIEPLKGKPVLAFS-GIGNPERFF 243 (326)
T ss_pred CcchhHHHHhhh--cCCceEEE----------EEEeccc-cccc-c---------cchhhccCCeeEEEE-EcCChHHHH
Confidence 322211110000 11111110 0000000 0000 0 000001244677766 445556677
Q ss_pred HHHHhccccceec-----cCCCCHHHHHHHHHHHhcCCccEEEeeC
Q 004518 555 DLLGELKLNVREI-----HSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 555 ~~L~~~~~~v~~l-----h~~l~~~eR~~v~~~F~~g~~~VLvaT~ 595 (747)
+.|+..|+.+... |-..+..+-..+........ .||+|.
T Consensus 244 ~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 244 DTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred HHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 7888877765422 66677777777777765544 888885
No 470
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.07 E-value=3.5 Score=39.25 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=14.7
Q ss_pred EEEEcCCCChhHHHHHHH
Q 004518 319 VLAKAKTGTGKTVAFLLP 336 (747)
Q Consensus 319 vlv~a~TGsGKTl~~~lp 336 (747)
.|+.|+.|||||+.|...
T Consensus 5 ~IvaG~NGsGKstv~~~~ 22 (187)
T COG4185 5 DIVAGPNGSGKSTVYAST 22 (187)
T ss_pred EEEecCCCCCceeeeecc
Confidence 478899999999976543
No 471
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.92 E-value=18 Score=40.11 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=44.3
Q ss_pred CCCccEEEEeCCcccc-CCCcHHHHHHHHHHCCCCCeEEEEeccCChHHHHHHHHHh
Q 004518 432 LMGVKVLVLDEADHLL-DMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIAL 487 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll-~~~f~~~l~~il~~~~~~~q~il~SATl~~~v~~l~~~~~ 487 (747)
...+++||||=|-++- +......+..|-..+.++--++++-|+..-...+.++.+-
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 3467999999998875 4557788888999998888899999998877666666553
No 472
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=80.85 E-value=14 Score=44.72 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChhHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFL 334 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~ 334 (747)
.++|+.||+|+|||....
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999998643
No 473
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=80.85 E-value=5.5 Score=48.85 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.9
Q ss_pred cEEEEcCCCChhHHHH
Q 004518 318 DVLAKAKTGTGKTVAF 333 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~ 333 (747)
.++++||||+|||...
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999854
No 474
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.79 E-value=13 Score=46.08 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=34.4
Q ss_pred cEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEeccCCh
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPE 477 (747)
Q Consensus 436 ~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SATl~~ 477 (747)
-+||||++|.+.+......+..++...+....+|+.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 479999999987666677888889999999999888877543
No 475
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=80.75 E-value=2.8 Score=44.11 Aligned_cols=42 Identities=29% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEecc
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSAT 474 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~SAT 474 (747)
+.+-+++|+||+=.-+|......+..++......+ ++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~-tii~isH 195 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC-TVILSEH 195 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 45668999999998888887888888877665444 4555444
No 476
>PHA00350 putative assembly protein
Probab=80.63 E-value=10 Score=41.96 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=16.6
Q ss_pred EEEEcCCCChhHHHHHH-HHHHHH
Q 004518 319 VLAKAKTGTGKTVAFLL-PSIEVV 341 (747)
Q Consensus 319 vlv~a~TGsGKTl~~~l-pil~~l 341 (747)
.++.|..|||||+..+- .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 57899999999986554 344444
No 477
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=80.62 E-value=7.7 Score=43.96 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=22.9
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEE
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLL 470 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il 470 (747)
....+|||||||.|.... ...+.+.+..-+....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 467899999999887432 3344555555444444443
No 478
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=80.53 E-value=7.9 Score=38.52 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=28.3
Q ss_pred CCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEE
Q 004518 433 MGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLF 471 (747)
Q Consensus 433 ~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~ 471 (747)
..-.++++||.-.-++......+..++..+....++|+.
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIii 172 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVI 172 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEE
Confidence 345799999999888877777777777776555544443
No 479
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=80.51 E-value=7.6 Score=44.53 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChhHHH
Q 004518 316 GKDVLAKAKTGTGKTVA 332 (747)
Q Consensus 316 ~~dvlv~a~TGsGKTl~ 332 (747)
.+.+++.||+|+|||++
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999985
No 480
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.31 E-value=14 Score=40.08 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=13.8
Q ss_pred cEEEEcCCCChhHHHH
Q 004518 318 DVLAKAKTGTGKTVAF 333 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~ 333 (747)
.+++.||.|+|||.+.
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999853
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.14 E-value=1.6 Score=43.55 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=13.0
Q ss_pred EEEEcCCCChhHHH
Q 004518 319 VLAKAKTGTGKTVA 332 (747)
Q Consensus 319 vlv~a~TGsGKTl~ 332 (747)
++++||||||||+.
T Consensus 4 ilI~GptGSGKTTl 17 (198)
T cd01131 4 VLVTGPTGSGKSTT 17 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999995
No 482
>PRK08760 replicative DNA helicase; Provisional
Probab=80.07 E-value=8.8 Score=43.81 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=18.9
Q ss_pred HCCCcEEEEcCCCChhHHHHHHHHHHH
Q 004518 314 LKGKDVLAKAKTGTGKTVAFLLPSIEV 340 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~~lpil~~ 340 (747)
..+.-+||.|.+|.|||+..+--+.+.
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~ 253 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYA 253 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHH
Confidence 345668999999999998544333333
No 483
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=80.06 E-value=7.4 Score=45.34 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=65.1
Q ss_pred CCCeEEEEecch----hHHHHHHHHHHhccccceeccCCCCHHHHHHHHHHHhcCCccEEEeeCCc-ccccCCCCccEEE
Q 004518 536 PEYKVLVFCTTA----MVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVS-ARGVDYPDVTLVI 610 (747)
Q Consensus 536 ~~~k~LVF~~s~----~~~~~l~~~L~~~~~~v~~lh~~l~~~eR~~v~~~F~~g~~~VLvaT~v~-~~GiDip~V~~VI 610 (747)
.++++.+-.||- .++..+.++|...++.+..+.|.+..++|..++.+..+|.++|+|.|-++ ...+++.+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 467899999995 44555666677779999999999999999999999999999999999765 5789999999988
Q ss_pred E
Q 004518 611 Q 611 (747)
Q Consensus 611 ~ 611 (747)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 484
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=79.64 E-value=6.1 Score=38.61 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=26.4
Q ss_pred ccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 435 VKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
-+++++||.-.-++......+..++..+...-.+++++
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIiv 145 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 68999999998888777777777666553333344443
No 485
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=79.61 E-value=11 Score=44.12 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=54.4
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhhCCCceEEEEeCCcchHHH---HHHHhcCCCcEEEECchhHHHHHHccccccccC
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALE---QKRMQANPCQILVATPGRLRDHIENTAGFATRL 432 (747)
Q Consensus 356 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~~~IlV~Tpg~Ll~~l~~~~~~~~~L 432 (747)
.++||.|+|+..|.++++.+... ++.+..++++...... ...+..+..+||||| +.+..+ +++
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG----IDi 323 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG----LHI 323 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC----CCc
Confidence 35999999999999998877654 6788888888664432 234556778999999 456655 456
Q ss_pred CCccEEEEeCC
Q 004518 433 MGVKVLVLDEA 443 (747)
Q Consensus 433 ~~i~~vIiDEA 443 (747)
.++++||.-..
T Consensus 324 p~V~~VInyd~ 334 (572)
T PRK04537 324 DGVKYVYNYDL 334 (572)
T ss_pred cCCCEEEEcCC
Confidence 78888886543
No 486
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=79.61 E-value=4.3 Score=41.06 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=18.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIE 339 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~ 339 (747)
.+.-+.|.|++|+|||...+..+..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 3577899999999999864443333
No 487
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=79.53 E-value=3.1 Score=48.77 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=32.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEAS 376 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 376 (747)
..++|.|--|+|||++ +-.+...+ .++|+.||+..|+.+...+.
T Consensus 72 s~~~itG~AGsGKst~--i~~l~~~l--------------~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTS--IQTLNENL--------------DCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHH--HHHHHHhc--------------CEEEEcchHHHHHhhhcccc
Confidence 5689999999999994 32333221 28999999999999877444
No 488
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=79.23 E-value=13 Score=45.89 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChhHHHHH
Q 004518 317 KDVLAKAKTGTGKTVAFL 334 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~~ 334 (747)
.++|+.||+|+|||.+..
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999998543
No 489
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=79.20 E-value=11 Score=42.46 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=19.3
Q ss_pred HCCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 314 LKGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 314 l~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
..|.-++|.|++|+|||+..+--+.+.+
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a 220 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAA 220 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHH
Confidence 3456789999999999985443333333
No 490
>CHL00176 ftsH cell division protein; Validated
Probab=78.85 E-value=14 Score=43.86 Aligned_cols=16 Identities=50% Similarity=0.621 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhHHH
Q 004518 317 KDVLAKAKTGTGKTVA 332 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~ 332 (747)
+.+++.||+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999984
No 491
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.82 E-value=2.5 Score=44.13 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCcEEEEcCCCChhHHHH
Q 004518 307 EATLPVLLKGKDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 307 ~~~i~~il~~~dvlv~a~TGsGKTl~~ 333 (747)
+.++..+..+..+++.|++|+|||.+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 345566778899999999999999854
No 492
>PRK07004 replicative DNA helicase; Provisional
Probab=78.60 E-value=9.6 Score=43.32 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=19.5
Q ss_pred HHCCCcEEEEcCCCChhHHHHHHHHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEV 340 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~lpil~~ 340 (747)
+..|.-+||.|.+|+|||...+--+.+.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~ 237 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYV 237 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 3456678999999999998544333333
No 493
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=78.54 E-value=1.3 Score=44.38 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=22.3
Q ss_pred HHCCCcEEEEcCCCChhHHHHHHHHHHHH
Q 004518 313 LLKGKDVLAKAKTGTGKTVAFLLPSIEVV 341 (747)
Q Consensus 313 il~~~dvlv~a~TGsGKTl~~~lpil~~l 341 (747)
+..|..++|+||.|||||+ ++-+++.|
T Consensus 25 v~~Gevv~iiGpSGSGKST--lLRclN~L 51 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKST--LLRCLNGL 51 (240)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHHCC
Confidence 3467889999999999999 77777765
No 494
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=78.44 E-value=32 Score=37.54 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=33.9
Q ss_pred ccEEEEeCCccccCCC--cHHHHHHHHHHCCCCCeEEEEeccCChHH
Q 004518 435 VKVLVLDEADHLLDMG--FRKDIEKIIAAVPKQRQTLLFSATVPEEV 479 (747)
Q Consensus 435 i~~vIiDEAh~ll~~~--f~~~l~~il~~~~~~~q~il~SATl~~~v 479 (747)
-=++|+|-||.+-|++ ....+.++-..++.+.-.|++|+++.+..
T Consensus 116 ~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 116 KVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred eEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 3479999999998876 44555566666777777889999987764
No 495
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=78.32 E-value=22 Score=36.40 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=31.1
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHcCCCCCC--CCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 004518 318 DVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDR--DQRRPPILVLVICPTRELATQAATEASTLLK 380 (747)
Q Consensus 318 dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~--~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 380 (747)
-.++.|+.|+|||+..+..++.. ........ .....+.+|+|++- -.-..++.+++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v-a~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM-ALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH-hcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHh
Confidence 46899999999998644433332 22211111 11123456888872 1122344445555443
No 496
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=78.30 E-value=6.9 Score=47.06 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCccEEEEeCCccccCCCcHHHHHHHHHHCCCCCeEEEEe
Q 004518 432 LMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFS 472 (747)
Q Consensus 432 L~~i~~vIiDEAh~ll~~~f~~~l~~il~~~~~~~q~il~S 472 (747)
+++-+++|+||+=.-+|......+...+..+.+.+.+|+.|
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiIt 657 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVT 657 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56778999999988888777777777776665555444433
No 497
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.07 E-value=17 Score=44.74 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChhHHHH
Q 004518 317 KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~ 333 (747)
.++|+.||+|+|||.+.
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999854
No 498
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=78.06 E-value=16 Score=44.97 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChhHHHH
Q 004518 317 KDVLAKAKTGTGKTVAF 333 (747)
Q Consensus 317 ~dvlv~a~TGsGKTl~~ 333 (747)
.++|+.||.|+|||.+.
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 58999999999999853
No 499
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=77.99 E-value=53 Score=38.48 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHC-------CCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 004518 303 TIVQEATLPVLLK-------GKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEA 375 (747)
Q Consensus 303 t~iQ~~~i~~il~-------~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 375 (747)
|--|..++-.++. +--+-+.|.-|-||+.+.-+.+...+. .++ .-+-|+.|.-+-..-+++.+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa-~Gy---------snIyvtSPspeNlkTlFeFv 324 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVA-FGY---------SNIYVTSPSPENLKTLFEFV 324 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHh-cCc---------ceEEEcCCChHHHHHHHHHH
Confidence 4567776644332 234678888999999987777666653 222 22888999887666655543
No 500
>PRK04328 hypothetical protein; Provisional
Probab=77.78 E-value=4.3 Score=42.09 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 004518 315 KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVICPTRELATQAATEASTL 378 (747)
Q Consensus 315 ~~~dvlv~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 378 (747)
.+..++|.|++|+|||+..+..+.+.+.+.. .++++. +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-----------~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-----------PGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-----------cEEEEE-eeCCHHHHHHHHHHc
Confidence 3577899999999999854444444443221 266655 444455566655554
Done!