Query 004518
Match_columns 747
No_of_seqs 506 out of 3764
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 18:16:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004518.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1825-1829//hhsearch_pdb/004518hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqw_A ATP-dependent RNA helic 1.0 1 1 473.4 37.5 454 285-745 27-504 (579)
2 3i5x_A ATP-dependent RNA helic 1.0 1 1 461.7 37.4 453 285-744 78-554 (563)
3 2db3_A ATP-dependent RNA helic 1.0 1 1 449.9 42.6 362 276-653 53-417 (434)
4 3fmp_B ATP-dependent RNA helic 1.0 1 1 433.0 20.1 365 270-655 83-458 (479)
5 2i4i_A ATP-dependent RNA helic 1.0 1 1 420.0 39.9 368 276-654 12-393 (417)
6 2j0s_A ATP-dependent RNA helic 1.0 1 1 417.6 40.4 359 277-655 35-394 (410)
7 3eiq_A Eukaryotic initiation f 1.0 1 1 414.0 35.3 359 278-655 39-398 (414)
8 1xti_A Probable ATP-dependent 1.0 1 1 406.1 41.7 360 278-654 7-368 (391)
9 3fht_A ATP-dependent RNA helic 1.0 1 1 405.2 37.9 365 269-654 15-390 (412)
10 1s2m_A Putative ATP-dependent 1.0 1 1 404.8 40.7 357 277-654 19-375 (400)
No 1
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=473.41 Aligned_cols=454 Identities=30% Similarity=0.463 Sum_probs=349.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
Q ss_conf 999999999998799999699999999997--799699975899806999999999999819999988899990899985
Q 004518 285 SISALSLKGIKDAGYEKMTIVQEATLPVLL--KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC 362 (747)
Q Consensus 285 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il--~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIi~ 362 (747)
.|++.+++++..+|+..|+++|.++++.++ .+++++++||||+|||++|++|+++.+...... ...++++||++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~~lvl~ 102 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVKAVIVA 102 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCCEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCCCCEEEEEC
T ss_conf 99999999999779999999999999999805998399983798679999999999999841335----66897699982
Q ss_pred CCHHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 7488999999999997500---8995089986883309999999429981999784068999971434212378833899
Q 004518 363 PTRELATQAATEASTLLKY---HPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLV 439 (747)
Q Consensus 363 Ptr~La~Q~~~~~~~l~~~---~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~~~~~L~~i~~iI 439 (747)
||++||.|+++.+..++.. ...+.+....++.....+...+....++|+|+||++|++++.... ...+..+++||
T Consensus 103 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lV 180 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKV 180 (579)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC--CCCCCCCCEEE
T ss_conf 5199999999999999854346666379999899067999999845999999989899999998455--43413388999
Q ss_pred EECCCCCCCCCCHHHHHHHHHHCCC-------CCEEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCCCCCCCCEEEE
Q ss_conf 9178612677719999999997798-------972999941378579999999803785011-10247851010013577
Q 004518 440 LDEADHLLDMGFRKDIEKIIAAVPK-------QRQTLLFSATVPEEVRQICHIALKRDHEFI-NTVEEGSEETHEQVRQM 511 (747)
Q Consensus 440 iDEAh~ll~~~~~~~i~~il~~l~~-------~~q~il~SATl~~~i~~l~~~~l~~~~~~i-~~~~~~~~~~~~~i~~~ 511 (747)
|||||++++++|...+..++..++. .+|+++||||+++.+..++..++..+..+. .............+.+.
T Consensus 181 iDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (579)
T 3sqw_A 181 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260 (579)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EECHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 98837764478799999999874553114656745999935688689999999769982599960576665540343159
Q ss_pred EEECCC-CCCHHHHHHHHHHHH-HCCCCCEEEEEECCHHHHHHHHHHHHHC---CCCCEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 886575-562679999999975-1299980999924256899999999751---45510014789998999999997139
Q 004518 512 HLVAPL-DLHFPLLYVLLREHV-ADNPEYKVLVFCTTAMVTRMVADLLGEL---KLNVREIHSRKPQSYRTRVSDEFRKS 586 (747)
Q Consensus 512 ~~~~~~-~~k~~~l~~~l~~~~-~~~~~~~~LVF~~s~~~~~~l~~~L~~~---~~~v~~lh~~l~~~~R~~v~~~F~~g 586 (747)
...... ......+...+...+ ......++||||+++..+..++..|... ++.+..+|+.|++.+|..+++.|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g 340 (579)
T 3sqw_A 261 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 340 (579)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99944226559999999999986137898389988928999999999987524797279841889999999999986358
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHH---CCCCCCCCC
Q ss_conf 95289960776444689995389980899983358876213787999544999947322889997430---898657899
Q 004518 587 KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD---LPILKAPVP 663 (747)
Q Consensus 587 ~~~ILvaT~v~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~e~~~l~~l~~---~~~~~~~~~ 663 (747)
+..|||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.|..++..+++ ..+......
T Consensus 341 ~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 420 (579)
T 3sqw_A 341 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420 (579)
T ss_dssp SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred CCEEEEECCHHHCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 87199981445458873568789981899987776532264455899732999972418999999999858975535678
Q ss_pred CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC-CCCCCC-HHHHHHHHHHHCCCCC-CCCCCHHHHHHCCCCC
Q ss_conf 999214999999999999736999999999987201434-667145-9999999999749999-9988813221028988
Q 004518 664 SVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKV-GRDKYK-LVELANEYSRSMGLDN-PPAIPKLVLGKMGLRN 740 (747)
Q Consensus 664 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~gl~~-~p~i~~~~~~~~g~~~ 740 (747)
.........+.+.+... ......++++|+.+|...... .....+ +..++..+...++..+ .|++.+..+++|||++
T Consensus 421 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~ 499 (579)
T 3sqw_A 421 EPSEEIKSEVLEAVTEE-PEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSR 499 (579)
T ss_dssp CCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCTTCCEEECHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
T ss_conf 84389999999999865-99999999999999999998747772458999999999983899888742066798668889
Q ss_pred CCCCC
Q ss_conf 99987
Q 004518 741 IPGLR 745 (747)
Q Consensus 741 ~pgl~ 745 (747)
+||+.
T Consensus 500 ~~~~~ 504 (579)
T 3sqw_A 500 SPIGK 504 (579)
T ss_dssp CHHHH
T ss_pred CCCCE
T ss_conf 98730
No 2
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=461.68 Aligned_cols=453 Identities=30% Similarity=0.452 Sum_probs=342.8
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
Q ss_conf 999999999998799999699999999997--799699975899806999999999999819999988899990899985
Q 004518 285 SISALSLKGIKDAGYEKMTIVQEATLPVLL--KGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPILVLVIC 362 (747)
Q Consensus 285 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il--~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~vLIi~ 362 (747)
.|++.+++++..+|+..|+++|.++++.++ .++|++++||||+|||++|++|+++.+.+.+.. ...++++||++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~~lil~ 153 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVKAVIVA 153 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCCEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC----CCCCEEEEEEC
T ss_conf 88999999999779999999999999999667997299987899974299999999998742346----66770499982
Q ss_pred CCHHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 7488999999999997500---8995089986883309999999429981999784068999971434212378833899
Q 004518 363 PTRELATQAATEASTLLKY---HPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLV 439 (747)
Q Consensus 363 Ptr~La~Q~~~~~~~l~~~---~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~~~~~L~~i~~iI 439 (747)
||++||.|+++.+..+... ...+.+..++++.....+...+....++|+|+||++|++++.+.. ...+..+++||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lV 231 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKV 231 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCC--CCCCCCCEEEE
T ss_conf 8499999999999999742356676049999899077999999746899989989299999998344--11125510999
Q ss_pred EECCCCCCCCCCHHHHHHHHHHCC-------CCCEEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCCCCCCCCEEEE
Q ss_conf 917861267771999999999779-------8972999941378579999999803785011-10247851010013577
Q 004518 440 LDEADHLLDMGFRKDIEKIIAAVP-------KQRQTLLFSATVPEEVRQICHIALKRDHEFI-NTVEEGSEETHEQVRQM 511 (747)
Q Consensus 440 iDEAh~ll~~~~~~~i~~il~~l~-------~~~q~il~SATl~~~i~~l~~~~l~~~~~~i-~~~~~~~~~~~~~i~~~ 511 (747)
|||||++++++|...+..++..++ ..+|+++||||+++.+..+...++..+..+. .............+.+.
T Consensus 232 iDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 232 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EECHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEE
T ss_conf 83778775055099999999861110356766755999981688789999998638876178741577775521037548
Q ss_pred EEECCCC-CCHHHHHHHHHH-HHHCCCCCEEEEEECCHHHHHHHHHHHHHC---CCCCEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 8865755-626799999999-751299980999924256899999999751---45510014789998999999997139
Q 004518 512 HLVAPLD-LHFPLLYVLLRE-HVADNPEYKVLVFCTTAMVTRMVADLLGEL---KLNVREIHSRKPQSYRTRVSDEFRKS 586 (747)
Q Consensus 512 ~~~~~~~-~k~~~l~~~l~~-~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~---~~~v~~lh~~l~~~~R~~v~~~F~~g 586 (747)
+...... .....+...+.. ........++||||+++..+..++..|... ++.+..+|+.|++.+|..+++.|++|
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 391 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 391 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99872267669999999999986137887289994817999999999987424796089825889999999999998668
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHC---CCCCCCCC
Q ss_conf 952899607764446899953899808999833588762137879995449999473228899974308---98657899
Q 004518 587 KGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL---PILKAPVP 663 (747)
Q Consensus 587 ~~~ILvaT~v~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~e~~~l~~l~~~---~~~~~~~~ 663 (747)
+..|||||+++++|||+|+|++||+|+.|.++..|+||+|||||.|+.|.|++|+++.|..++..+++. .+......
T Consensus 392 ~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 471 (563)
T 3i5x_A 392 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 471 (563)
T ss_dssp SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred CCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99889983666468984267779997999964246464272356999853999975048899999999748886634456
Q ss_pred CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC-CCCCCC-HHHHHHHHHHHCCCCCC-CCCCHHHHHHCCCCC
Q ss_conf 999214999999999999736999999999987201434-667145-99999999997499999-988813221028988
Q 004518 664 SVDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKV-GRDKYK-LVELANEYSRSMGLDNP-PAIPKLVLGKMGLRN 740 (747)
Q Consensus 664 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~gl~~~-p~i~~~~~~~~g~~~ 740 (747)
.........+...+.. .......+.++|+.||++.... ..+..+ +.+++..++...+..+. |.+.....+++|+.+
T Consensus 472 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~ 550 (563)
T 3i5x_A 472 EPSEEIKSEVLEAVTE-EPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSR 550 (563)
T ss_dssp CCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHHTHHHHHTTCTTCCEEECHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
T ss_conf 8547899999999864-899999999999999999988738984779999999999983899778863677898727888
Q ss_pred CCCC
Q ss_conf 9998
Q 004518 741 IPGL 744 (747)
Q Consensus 741 ~pgl 744 (747)
.|+.
T Consensus 551 ~~~~ 554 (563)
T 3i5x_A 551 SPIG 554 (563)
T ss_dssp CHHH
T ss_pred CCCH
T ss_conf 8117
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=449.94 Aligned_cols=362 Identities=30% Similarity=0.509 Sum_probs=310.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87687678999999999999879999969999999999779969997589980699999999999981999998889999
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPP 355 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 355 (747)
.+..+|+++++++.+++++..+||..|+++|+++++.+++++|++++|+||||||++|++|+++.++..... ....+
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~ 129 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGR 129 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTC
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC---CCCCC
T ss_conf 776885236999999999997699999989999999996699889987899982399999999999844532---13589
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 08999857488999999999997500899508998688330999999942998199978406899997143421237883
Q 004518 356 ILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGV 435 (747)
Q Consensus 356 ~~vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~~~~~L~~i 435 (747)
+++||++|||+||.|+++.+.+++... ++.+..++||.....+...+. .+++|+|+||++|++++.+. ...+.++
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~---~~~l~~~ 204 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECIT-RGCHVVIATPGRLLDFVDRT---FITFEDT 204 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHT-TCCSEEEECHHHHHHHHHTT---SCCCTTC
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHH-CCCCEEEECHHHHHHHHHHC---CCCCCCC
T ss_conf 648999348999999999999973347-867999978888789999850-69989998748999999728---8563327
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHC--CCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 389991786126777199999999977--989729999413785799999998037850111024785101001357788
Q 004518 436 KVLVLDEADHLLDMGFRKDIEKIIAAV--PKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHL 513 (747)
Q Consensus 436 ~~iIiDEAh~ll~~~~~~~i~~il~~l--~~~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~~~~~~~i~~~~~ 513 (747)
++||+||||+|++++|...+..++..+ +..+|+++||||++..+..++..++.++ .++... ........+.+.+.
T Consensus 205 ~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~-~~i~~~--~~~~~~~~i~~~~~ 281 (434)
T 2db3_A 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNY-VFVAIG--IVGGACSDVKQTIY 281 (434)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSC-EEEEES--STTCCCTTEEEEEE
T ss_pred CEEEECCHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC-EEEEEC--CCCCCCCCCCEEEE
T ss_conf 768875176663067199999999725789885699995568989999999864698-899953--56666665336999
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 65755626799999999751299980999924256899999999751455100147899989999999971399528996
Q 004518 514 VAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVT 593 (747)
Q Consensus 514 ~~~~~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~~F~~g~~~ILva 593 (747)
......+...+..++... ..++||||+++..+..++..|...++.+..+||.+++.+|..+++.|++|+..||||
T Consensus 282 ~~~~~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp ECCGGGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EECCHHHHHHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 937177799999999857-----998799994718999999999867998799849999999999999998599939998
Q ss_pred ECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCC-HHHHHHHHH
Q ss_conf 077644468999538998089998335887621378799954499994732-288999743
Q 004518 594 SDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPW-EEFFLSTIK 653 (747)
Q Consensus 594 T~v~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~-e~~~l~~l~ 653 (747)
|+++++|+|+|+|++||+|++|.++..|+||+||+||.|+.|.|++|+++. +...+..+.
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~ 417 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLV 417 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHH
T ss_pred CHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 2064577883248989997899998899998160655899877999980642199999999
No 4
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=433.02 Aligned_cols=365 Identities=29% Similarity=0.448 Sum_probs=300.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998887687678999999999999879999969999999999779--9699975899806999999999999819999
Q 004518 270 GKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPPV 347 (747)
Q Consensus 270 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~--~dvii~a~TGsGKTl~~~lpil~~l~~~~~~ 347 (747)
....+.....+|.+++|++.+++++..+||..|+++|.++++.++.+ ++++++|+||||||++|++|+++.+....
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-- 160 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-- 160 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--
T ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--
T ss_conf 999876675997776999999999997599999989999999997489985899857998351999999999876347--
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCC
Q ss_conf 98889999089998574889999999999975008995089986883309999999429981999784068999971434
Q 004518 348 DRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAG 427 (747)
Q Consensus 348 ~~~~~~~~~~vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~ 427 (747)
.++++||++||++|+.|+++.+..+..+.+.+.+....++...... ....++|+|+||++|++++.+..
T Consensus 161 ------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~Tp~~l~~~l~~~~- 229 (479)
T 3fmp_B 161 ------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSKLK- 229 (479)
T ss_dssp ------CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT----CCCCCSEEEECHHHHHHHHTTSC-
T ss_pred ------CCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----CCCCCCEEEECCHHHHHHHHHCC-
T ss_conf ------8874799938399999999999999722887459999688640211----14789989978638999997269-
Q ss_pred CCCCCCCCCEEEEECCCCCCC-CCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 212378833899917861267-7719999999997798972999941378579999999803785011102478510100
Q 004518 428 FATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHE 506 (747)
Q Consensus 428 ~~~~L~~i~~iIiDEAh~ll~-~~~~~~i~~il~~l~~~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~~~~~~ 506 (747)
...+.++++|||||||++++ .++...+..+...++..+|+++||||++..+..+...++..+ ..+.... ......
T Consensus 230 -~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~--~~~~~~ 305 (479)
T 3fmp_B 230 -FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKR--EEETLD 305 (479)
T ss_dssp -CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEEEEC---------
T ss_pred -CCCCCCCCEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCC-EEEECCC--CCCCCC
T ss_conf -967233989999777888441896789999996388546499994878879999999976998-6996266--456767
Q ss_pred CEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHC
Q ss_conf 13577886575-56267999999997512999809999242568999999997514551001478999899999999713
Q 004518 507 QVRQMHLVAPL-DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRK 585 (747)
Q Consensus 507 ~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~~F~~ 585 (747)
.+.+.+..+.. ..+...+..++.. ....++||||+++..+..++..|...++.+..+|+.+++.+|..+++.|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~ 381 (479)
T 3fmp_B 306 TIKQYYVLCSSRDEKFQALCNLYGA----ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 381 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 7669999947778899999999852----567866999686889999999997589518996088999999999999976
Q ss_pred CCCCEEEEECCCCCCCCCCCCCEEEEECCCC------CHHHHHHHHCCCCCCCCCCEEEEEECCCH-HHHHHHHHHC
Q ss_conf 9952899607764446899953899808999------83358876213787999544999947322-8899974308
Q 004518 586 SKGLILVTSDVSARGVDYPDVTLVIQVGLPS------DREQYIHRLGRTGRKGKEGQGILLLAPWE-EFFLSTIKDL 655 (747)
Q Consensus 586 g~~~ILvaT~v~~rGiDip~V~~VI~~d~P~------s~~~y~Qr~GRagR~G~~G~~~~l~~~~e-~~~l~~l~~~ 655 (747)
|..+|||||+++++|+|+|+|++||+|++|. +...|+||+|||||.|+.|.|++|+++.+ ..++..+++.
T Consensus 382 g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~ 458 (479)
T 3fmp_B 382 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEH 458 (479)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 99959998442116776223998999669998766778999998724335699984399997473059999999998
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=420.00 Aligned_cols=368 Identities=33% Similarity=0.484 Sum_probs=308.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC--------
Q ss_conf 876876789999999999998799999699999999997799699975899806999999999999819999--------
Q 004518 276 MSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPV-------- 347 (747)
Q Consensus 276 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~-------- 347 (747)
....+|+++++++.+++++...||..|+++|.++++.++.++|+++++|||+|||++|++|+++.+......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCC
T ss_conf 64489744899999999999779999988999999987269988999079877989999999999974464100000111
Q ss_pred --CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCC
Q ss_conf --988899990899985748899999999999750089950899868833099999994299819997840689999714
Q 004518 348 --DRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENT 425 (747)
Q Consensus 348 --~~~~~~~~~~vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~ 425 (747)
.......++++||++||++|+.|+++.+..++... ++.+..++|+.....+...+. .+++|+|+||++|..++...
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLE-RGCHLLVATPGRLVDMMERG 169 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHT-TCCSEEEECHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHH-CCCCEEEECHHHHHHHHHCC
T ss_conf 2334444579648998892999999999999982758-804999988998799999860-79999998969999999749
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH--CCC--CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 342123788338999178612677719999999997--798--9729999413785799999998037850111024785
Q 004518 426 AGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAA--VPK--QRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGS 501 (747)
Q Consensus 426 ~~~~~~L~~i~~iIiDEAh~ll~~~~~~~i~~il~~--l~~--~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~ 501 (747)
...+..+++||+||||++++++|...+..++.. ++. .+|+++||||++..+..+...++..+. .+... ..
T Consensus 170 ---~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~--~~ 243 (417)
T 2i4i_A 170 ---KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI-FLAVG--RV 243 (417)
T ss_dssp ---SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE-EEEEC----
T ss_pred ---CCCHHHCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCE-EEEEC--CC
T ss_conf ---9376359599997836753658699999999735489767748999998579999999999758978-99807--87
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH
Q ss_conf 10100135778865755626799999999751299980999924256899999999751455100147899989999999
Q 004518 502 EETHEQVRQMHLVAPLDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSD 581 (747)
Q Consensus 502 ~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~ 581 (747)
......+.+.+.......+...+..++... ....++||||+++..+..++..|...++.+..+|+.+++.+|..+++
T Consensus 244 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 244 GSTSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp --CCSSEEEEEEECCGGGHHHHHHHHHHTC---CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCHHHHHHHHHHHHHC---CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
T ss_conf 777557427899926076899999999855---89971999979889999999999977997467108999899999999
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 9713995289960776444689995389980899983358876213787999544999947322889997430
Q 004518 582 EFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 582 ~F~~g~~~ILvaT~v~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~e~~~l~~l~~ 654 (747)
.|++|+..|||||+++++|+|+|++++||+|+.|.++..|+||+||+||.|+.|.|++|+++.+...+..+.+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 9976999799989744347873468989997699998999986284314899725999876243899999999
No 6
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=1.00 E-value=1 Score=417.64 Aligned_cols=359 Identities=30% Similarity=0.518 Sum_probs=306.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 76876789999999999998799999699999999997799699975899806999999999999819999988899990
Q 004518 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI 356 (747)
Q Consensus 277 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 356 (747)
...+|+++++++.+++++...|+..|+++|.++++.++++++++++++||+|||++|++|+++.+... ..+.
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~ 106 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--------VRET 106 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSC
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHC--------CCCC
T ss_conf 77997666999999999997699999889999989984799779988899983399999999998625--------6783
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 89998574889999999999975008995089986883309999999429981999784068999971434212378833
Q 004518 357 LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436 (747)
Q Consensus 357 ~vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~~~~~L~~i~ 436 (747)
++||++||++|+.|+++.+..++... ++.+..+.++.....+...+.. +++|+|+||++|.+++... ...+..++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~---~~~~~~~~ 181 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRR---SLRTRAIK 181 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHC-CCCEEECCHHHHHHHHHHC---CCCHHHEE
T ss_conf 38997384899999999999984547-7379999899787999998516-9988985989999999838---93575605
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 89991786126777199999999977989729999413785799999998037850111024785101001357788657
Q 004518 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 437 ~iIiDEAh~ll~~~~~~~i~~il~~l~~~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
+||+||||+++++++...+..++..++...|+++||||++..+..+...++..+..+.. .........+.+.+....
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 258 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV---KRDELTLEGIKQFFVAVE 258 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECC---CGGGCSCTTEEEEEEEES
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEE---CCCCCCCCCCEEEEEEEC
T ss_conf 99975688987634599999999848647669999757999999999987589889995---686556788559999938
Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5-562679999999975129998099992425689999999975145510014789998999999997139952899607
Q 004518 517 L-DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSD 595 (747)
Q Consensus 517 ~-~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~~F~~g~~~ILvaT~ 595 (747)
. +.+...+..++... ...++||||+++..+..++..|...++.+..+||.+++.+|..+++.|++|...|||||+
T Consensus 259 ~~~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 259 REEWKFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp STTHHHHHHHHHHHHH----TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred CHHHHHHHHHHHHHHC----CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 2776999999999735----778479998578789999999986799469822789988999999998779998999897
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHC
Q ss_conf 764446899953899808999833588762137879995449999473228899974308
Q 004518 596 VSARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 596 v~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~e~~~l~~l~~~ 655 (747)
++++|+|+|++++||+|+.|.++..|+||+||+||.|+.|.|++|+++.+...+..++.+
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~ 394 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 394 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHH
T ss_conf 654748844599899979999989999864645679996599998657899999999998
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=414.04 Aligned_cols=359 Identities=30% Similarity=0.473 Sum_probs=308.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 68767899999999999987999996999999999977996999758998069999999999998199999888999908
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
..+|+++++++.+++.+...++..|+++|.++++.++++++++++++||+|||++|++++++.+.... .+.+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~ 110 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--------KATQ 110 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCC
T ss_pred HCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC--------CCEE
T ss_conf 14774479999999999976999999899998679857997899878998505999999999986057--------8616
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 99985748899999999999750089950899868833099999994299819997840689999714342123788338
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
+||++|+++|+.|+++.+..++... +..+....++.....+...+..+.++|+|+||++|.+.+... ...+..+++
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~~ 186 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR---YLSPKYIKM 186 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT---SSCSTTCCE
T ss_pred EEEEECHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCC---CCCCCCCCE
T ss_conf 9999375999999999999984515-833999978965578999973699999998989999999759---956303829
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf 99917861267771999999999779897299994137857999999980378501110247851010013577886575
Q 004518 438 LVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAPL 517 (747)
Q Consensus 438 iIiDEAh~ll~~~~~~~i~~il~~l~~~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 517 (747)
||+||||++.++++...+..++..++...|+++||||++..+..+...++..+..+.. .........+.+.+.....
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 263 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV---KKEELTLEGIRQFYINVER 263 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECC---CCCCCCTTSCCEEEEECSS
T ss_pred EEEECHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEE---CCCCCCCCCCEEEEEEECH
T ss_conf 9998988862037399999999838887769999983687899999987589789992---4776688980599999676
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf -5626799999999751299980999924256899999999751455100147899989999999971399528996077
Q 004518 518 -DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 518 -~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~~F~~g~~~ILvaT~v 596 (747)
+.+...+..++. ....+++||||+++..+..++..|...++.+..+|+.+++.+|..+++.|++|..+|||||++
T Consensus 264 ~~~~~~~l~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 339 (414)
T 3eiq_A 264 EEWKLDTLCDLYE----TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339 (414)
T ss_dssp STTHHHHHHHHHH----SSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS
T ss_pred HHHHHHHHHHHHH----HCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 8758999999998----479982899968789999999999866970897347799999999999997599939998883
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHC
Q ss_conf 64446899953899808999833588762137879995449999473228899974308
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDL 655 (747)
Q Consensus 597 ~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~e~~~l~~l~~~ 655 (747)
+++|+|+|++++||+|+.|.++..|+||+||+||.|+.|.|++|+++.+...+..++.+
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 398 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 398 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 12697856788899967999888823415725689897669999727789999999999
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=1.00 E-value=1 Score=406.07 Aligned_cols=360 Identities=29% Similarity=0.489 Sum_probs=310.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 68767899999999999987999996999999999977996999758998069999999999998199999888999908
Q 004518 278 ESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPIL 357 (747)
Q Consensus 278 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 357 (747)
..+|+++++++.+++++..+|+..|+++|.++++.++.++++++++|||+|||++|++|++..+.... .+.+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~ 78 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVS 78 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCC
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC--------CCEE
T ss_conf 88864469999999999977999998899999999826986899899998488999999998514567--------9736
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 99985748899999999999750089950899868833099999994299819997840689999714342123788338
Q 004518 358 VLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKV 437 (747)
Q Consensus 358 vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~~~~~L~~i~~ 437 (747)
+||++|+++|+.|+++.+.++....+++.+..+.|+.........+..+.++|+|+||++|..++... ...+.++++
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~ 155 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKH 155 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCC---CCCCCCCCE
T ss_conf 99987989999999999999971078707999857987798999973699989998789999999738---855220689
Q ss_pred EEEECCCCCCC-CCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 99917861267-77199999999977989729999413785799999998037850111024785101001357788657
Q 004518 438 LVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 438 iIiDEAh~ll~-~~~~~~i~~il~~l~~~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
||+||||++.+ .++...+..++...+...|+++||||+++.+..+...++..+..+.. ..........+.+.+....
T Consensus 156 vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 156 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV--DDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp EEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEEC--CCCCCCCCTTCEEEEEECC
T ss_pred EEEECHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCEEEEEECC
T ss_conf 99928888731403399999998529987359999851787899999987589869994--6766557003248999848
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 55626799999999751299980999924256899999999751455100147899989999999971399528996077
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~~F~~g~~~ILvaT~v 596 (747)
...+...+..++... ..+++||||+++..+..++..|...++.+..+|+.+++.+|..+++.|++|...|||||++
T Consensus 234 ~~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp GGGHHHHHHHHHHHS----CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CHHHHHHHHHHHHHC----CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 405799999999843----7885899918578999999999867996799758999899999999986699839998873
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCH-HHHHHHHHH
Q ss_conf 6444689995389980899983358876213787999544999947322-889997430
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWE-EFFLSTIKD 654 (747)
Q Consensus 597 ~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~e-~~~l~~l~~ 654 (747)
+++|+|+|++++||+|+.|.++..|+||+||+||.|+.|.|++++++.+ ..++..+++
T Consensus 310 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 53478711089899968999989988863445679996389999706416899999999
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=1.00 E-value=1 Score=405.16 Aligned_cols=365 Identities=29% Similarity=0.447 Sum_probs=303.1
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999998887687678999999999999879999969999999999779--969997589980699999999999981999
Q 004518 269 PGKHDSFMSESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKG--KDVLAKAKTGTGKTVAFLLPSIEVVIKSPP 346 (747)
Q Consensus 269 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~--~dvii~a~TGsGKTl~~~lpil~~l~~~~~ 346 (747)
.....+.....+|+++++++.+++++...|+..|+++|.++++.++.+ +++++++|||+|||++|++|+++.+....
T Consensus 15 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~- 93 (412)
T 3fht_A 15 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN- 93 (412)
T ss_dssp TCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-
T ss_pred CCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC-
T ss_conf 3689975566887667989999999998699999989999999996699970899899995598999999999865247-
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCC
Q ss_conf 99888999908999857488999999999997500899508998688330999999942998199978406899997143
Q 004518 347 VDRDQRRPPILVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTA 426 (747)
Q Consensus 347 ~~~~~~~~~~~vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~ 426 (747)
.++++||++|+++|+.|+++.+..+....+++.+....++...... ....++|+|+||++|.+++.+..
T Consensus 94 -------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~T~~~l~~~~~~~~ 162 (412)
T 3fht_A 94 -------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSKLK 162 (412)
T ss_dssp -------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT----CCCCCSEEEECHHHHHHHHTTSC
T ss_pred -------CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HCCCCCEEEECCHHHHHHHHHCC
T ss_conf -------9988899899899999999999999733666338986157411033----34789889998118999997469
Q ss_pred CCCCCCCCCCEEEEECCCCCCC-CCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 4212378833899917861267-771999999999779897299994137857999999980378501110247851010
Q 004518 427 GFATRLMGVKVLVLDEADHLLD-MGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETH 505 (747)
Q Consensus 427 ~~~~~L~~i~~iIiDEAh~ll~-~~~~~~i~~il~~l~~~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~~~~~ 505 (747)
...+.++++||+||||++++ .++...+..+...++...|+++||||+++.+..+....+..+.. +... ......
T Consensus 163 --~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~ 237 (412)
T 3fht_A 163 --FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV-IKLK--REEETL 237 (412)
T ss_dssp --SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEE-ECCC--GGGSSC
T ss_pred --CCCHHHCCEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEE-EEEC--CCCCCC
T ss_conf --96763481999968788854489578999998538877459999820588999999986689728-8605--644455
Q ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHH
Q ss_conf 013577886575-5626799999999751299980999924256899999999751455100147899989999999971
Q 004518 506 EQVRQMHLVAPL-DLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFR 584 (747)
Q Consensus 506 ~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~~F~ 584 (747)
..+.+.+..... ..+...+..++... ...++||||+++..+..++..|...++.+..+|+.+++.+|..+++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 313 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 313 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHH----SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHC----CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 675399998377587899999998616----8898899959789999999999867973899639999999999999997
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCEEEEECCCC------CHHHHHHHHCCCCCCCCCCEEEEEECCCH-HHHHHHHHH
Q ss_conf 39952899607764446899953899808999------83358876213787999544999947322-889997430
Q 004518 585 KSKGLILVTSDVSARGVDYPDVTLVIQVGLPS------DREQYIHRLGRTGRKGKEGQGILLLAPWE-EFFLSTIKD 654 (747)
Q Consensus 585 ~g~~~ILvaT~v~~rGiDip~V~~VI~~d~P~------s~~~y~Qr~GRagR~G~~G~~~~l~~~~e-~~~l~~l~~ 654 (747)
+|+..|||||+++++|+|+|++++||+|+.|. +...|+||+||+||.|+.|.|++++++.+ ..++..+++
T Consensus 314 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 390 (412)
T 3fht_A 314 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 390 (412)
T ss_dssp TTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 79994999858323688756789899979999877775421224145735479898469999758036999999999
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=1.00 E-value=1 Score=404.76 Aligned_cols=357 Identities=34% Similarity=0.512 Sum_probs=306.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 76876789999999999998799999699999999997799699975899806999999999999819999988899990
Q 004518 277 SESRFDQCSISALSLKGIKDAGYEKMTIVQEATLPVLLKGKDVLAKAKTGTGKTVAFLLPSIEVVIKSPPVDRDQRRPPI 356 (747)
Q Consensus 277 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~~~dvii~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 356 (747)
...+|+++++++.+++++..+||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--------~~~~ 90 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--------LNKI 90 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------SCSC
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC--------CCCC
T ss_conf 56882214999999999998799999899999988882699789988999579999999999987404--------5896
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 89998574889999999999975008995089986883309999999429981999784068999971434212378833
Q 004518 357 LVLVICPTRELATQAATEASTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVK 436 (747)
Q Consensus 357 ~vLIi~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Iiv~Tpg~Ll~~l~~~~~~~~~L~~i~ 436 (747)
++||++|+++|+.|+++.+..++... ++.+....++.....+...+ ...++|+|+||++|...+... ...+.+++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~~---~~~~~~~~ 165 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASRK---VADLSDCS 165 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHTT---CSCCTTCC
T ss_pred CEEEECCCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHH-CCCCCEEEECHHHHHHHHHHC---CCCCCCCC
T ss_conf 48998699999999999999985306-91499996896658899973-689989997669999999838---96516578
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 89991786126777199999999977989729999413785799999998037850111024785101001357788657
Q 004518 437 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHEQVRQMHLVAP 516 (747)
Q Consensus 437 ~iIiDEAh~ll~~~~~~~i~~il~~l~~~~q~il~SATl~~~i~~l~~~~l~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 516 (747)
+||+||||++.+.++...+..++..++...++++||||++..+.......+..+..+. ... ......+.+.+....
T Consensus 166 ~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 241 (400)
T 1s2m_A 166 LFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEIN-LME---ELTLKGITQYYAFVE 241 (400)
T ss_dssp EEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEES-CCS---SCBCTTEEEEEEECC
T ss_pred EEEEECCHHHHHHCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEE-ECC---CCCCCCCEEEEEEEC
T ss_conf 8999383586620669999999974896736999995688789999999758983788-324---344577506899835
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 55626799999999751299980999924256899999999751455100147899989999999971399528996077
Q 004518 517 LDLHFPLLYVLLREHVADNPEYKVLVFCTTAMVTRMVADLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDV 596 (747)
Q Consensus 517 ~~~k~~~l~~~l~~~~~~~~~~~~LVF~~s~~~~~~l~~~L~~~~~~v~~lh~~l~~~~R~~v~~~F~~g~~~ILvaT~v 596 (747)
...+...+..++.. ...+++||||+++..+..++..|...++.+..+|+.+++.+|..+++.|++|...|||||++
T Consensus 242 ~~~k~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (400)
T 1s2m_A 242 ERQKLHCLNTLFSK----LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 317 (400)
T ss_dssp GGGHHHHHHHHHHH----SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC
T ss_pred HHHHHHHHHHHHHH----CCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 23189999999864----37785799992489999999999866997698517799899999999986599809998673
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 6444689995389980899983358876213787999544999947322889997430
Q 004518 597 SARGVDYPDVTLVIQVGLPSDREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKD 654 (747)
Q Consensus 597 ~~rGiDip~V~~VI~~d~P~s~~~y~Qr~GRagR~G~~G~~~~l~~~~e~~~l~~l~~ 654 (747)
+++|+|+|++++||+|+.|.++..|+||+||+||.|+.|.|++|+++.|...+..+++
T Consensus 318 ~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 1147886678889995899998897874503037989846999865406999999999
Done!