BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004519
         (747 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
           Veillonella Parvula
 pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
           Veillonella Parvula
 pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
           Veillonella Parvula
 pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
           Veillonella Parvula
          Length = 418

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 39  DEETEFS--GFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTAT 96
           DE   F+   F++ V E+     + + I +  PGN  T  SI +DKD+  +LNFL D   
Sbjct: 157 DEHNNFNHEAFQNRVNELAAKQTNVVVI-FNTPGNNPTGYSI-EDKDWDSILNFLKDLVA 214

Query: 97  V 97
           +
Sbjct: 215 I 215


>pdb|3QEG|H Chain H, Crystal Structure Of Human N12-I2 Fab, An Adcc And
           Neutralizing Anti- Hiv-1 Env Antibody
          Length = 239

 Score = 28.9 bits (63), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 16/93 (17%)

Query: 35  AIDIDEET-----EFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLN 89
           AI  D E      E    KSE + ++ C++D+    Y+ PG   +         +  +++
Sbjct: 69  AITTDAEMSTAYMELRSLKSEDSAVYYCASDSRDFSYYEPGTSYS--------HYYNIMD 120

Query: 90  FLGDTATVDVFIQSEEAARNISNMPASRSSRTT 122
             G   TV V   S  + +  S  P + SS++T
Sbjct: 121 VWGQGTTVTV---SSASTKGPSVFPLAPSSKST 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,279,481
Number of Sequences: 62578
Number of extensions: 852642
Number of successful extensions: 2075
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2074
Number of HSP's gapped (non-prelim): 4
length of query: 747
length of database: 14,973,337
effective HSP length: 106
effective length of query: 641
effective length of database: 8,340,069
effective search space: 5345984229
effective search space used: 5345984229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)