BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004519
(747 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
PE=2 SV=1
Length = 703
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/384 (20%), Positives = 152/384 (39%), Gaps = 58/384 (15%)
Query: 322 DSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLF-VSFHASISGFQQGCRPLLFLDTT 380
DS + +FC +++ TNP ++ +F + +S G ++F+D++
Sbjct: 247 DSAAIYNYFC-RMQLTNPNFFYLMDVNDEGQLRNVFWADAFSKVSCSYFG--DVIFIDSS 303
Query: 381 PLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIAD 440
++ K++ L+T T + ++ + ET +++HW L+ S + S Q T + D
Sbjct: 304 YISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRSPQ-TIVTD 362
Query: 441 FQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEA-RRFMINDLYAAAYAPKFE 499
L ++++VF + + L H+ K+ + G +++A R+ +Y +FE
Sbjct: 363 RCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGGLHNYDAVRKAFTKAVYETLKVVEFE 422
Query: 500 ---GFQCS----IES--IKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYS 550
GF IE+ ++ + + W P + +T+F G H F
Sbjct: 423 AAWGFMVHNFGVIENEWLRSLYEERAKWA----PVYLKDTFFAGIAAAHPGETLKPFFER 478
Query: 551 WVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIAR----- 605
+V + + P+ +D + + + + T T + K ET ++R
Sbjct: 479 YVHK--QTPLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTKCSFETQLSRIYTRD 536
Query: 606 ---SFQV-------------LHLQSSTF------EVRGESA--DIVD--------VDRWD 633
FQ+ +H+ VRGES+ +I D V
Sbjct: 537 MFKKFQIEVEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVR 596
Query: 634 CTCKTWHLTGLPCCHAIAVLEWIG 657
C C ++ G C HA+ VL + G
Sbjct: 597 CICSCFNFYGYLCRHALCVLNFNG 620
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/416 (20%), Positives = 158/416 (37%), Gaps = 60/416 (14%)
Query: 285 PKDIADDIKREYG--IQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSV 342
P+ I + +EYG ++ +++ + R Q S + LL + ++ NP
Sbjct: 210 PRRIMSALIKEYGGISKVGFTEV-DCRNYMRNNRQKSIEGEIQLLLDYLRQMNADNPNFF 268
Query: 343 VTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTL--LTATSADGDD 400
+ ED S +F + +I F + F DTT +++Y+ T + G
Sbjct: 269 YSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTF-DTTYRSNRYRLPFAPFTGVNHHGQP 327
Query: 401 GIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSY 460
+F AF + ETE ++ W +A+S ++ D + ++ VF H +
Sbjct: 328 ILFGCAFII--NETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRAAIMHVFPGARHRF 385
Query: 461 CLRHLAEKLNRDIKGQF----SHEARRFMINDLYAAAYAPKFEGFQCSI---------ES 507
C H+ +K + F S E+ +L + FE S+ E
Sbjct: 386 CKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTES--VEDFERCWFSLLDKYELRDHEW 443
Query: 508 IKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVL 567
++ I D WV P + +T+F H + + F +++ + L L
Sbjct: 444 LQAIYSDRRQWV----PVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLS---QFFKL 496
Query: 568 RGKMMETIYTRRVES-----NQWLTKLTPSKEDKLQKETAIARSFQ--------VLHLQS 614
K +E+ + V++ N TPS +K E + F L +
Sbjct: 497 YEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMA 556
Query: 615 S---------TFEVR--GES--ADIVDVD----RWDCTCKTWHLTGLPCCHAIAVL 653
S T++V GE+ A V + R +C+C+ + +G+ C H +AV
Sbjct: 557 SKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVF 612
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4
PE=2 SV=2
Length = 732
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 75/369 (20%), Positives = 146/369 (39%), Gaps = 37/369 (10%)
Query: 322 DSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTP 381
D+ LL F +++E NP ED +F I ++ + F +T+
Sbjct: 162 DAEILLEFLM-RMQEENPKFFFAVDFSEDHLLRNVFWVDAKGIEDYKSFSDVVSF-ETSY 219
Query: 382 LNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADF 441
SKY+ L+ + + ++ +T + W +Q A+ + + D
Sbjct: 220 FVSKYKVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQSWLVAMGGQKPKVMLTDQ 279
Query: 442 QNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIK--GQFSHEARRFMINDLYAAAYAPKFE 499
N + ++A V H YCL H+ ++L R++ + + + +Y + +F+
Sbjct: 280 NNAIKAAIAAVLPETRHCYCLWHVLDQLPRNLDYWSMWQDTFMKKLFKCIYRSWSEEEFD 339
Query: 500 GFQCSIESIKGISPDAYDWVTQ--SEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHE 557
+ ++ I W+ E + WA T+ G + ++ + + + + +
Sbjct: 340 --RRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGITFAGLSMRCRSESVNSLFDRYV 397
Query: 558 LPITHMVDVLRGK--MMETIYTRRVES--NQW-----LTKLTP-SKEDKLQKETAIARSF 607
P T + + L G M+E Y ++ + W L +P K+ L I R F
Sbjct: 398 HPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQMLLVYSHEIFRRF 457
Query: 608 QV-------LHL-----QSSTFEVR---GESADIVDVDRWD----CTCKTWHLTGLPCCH 648
Q+ HL + +T+ V+ E +VD D + C+C+++ G C H
Sbjct: 458 QLEVLGAAACHLTKESEEGTTYSVKDFDDEQKYLVDWDEFKSDIYCSCRSFEYKGYLCRH 517
Query: 649 AIAVLEWIG 657
AI VL+ G
Sbjct: 518 AIVVLQMSG 526
>sp|C5CBU4|ARC_MICLC AAA ATPase forming ring-shaped complexes OS=Micrococcus luteus
(strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 /
NCIMB 9278 / NCTC 2665 / VKM Ac-2230) GN=arc PE=3 SV=1
Length = 584
Score = 40.0 bits (92), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 436 TFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYA 495
T A + G +LAE+ D ++ L HLA+ ++ + A+R + D AA A
Sbjct: 470 TVAALYDRGAGTALAELTDVSGTTHAL-HLADLVSGAVVADVVDRAKRHAVRDYLAAGQA 528
Query: 496 PKFEGFQCS--IESIKGISPDAYDWVTQSEPEHWANT 530
P G + E++ + D D + P WA T
Sbjct: 529 PAALGVREGHLREAVAAVLEDQTDLLATVAPAEWART 565
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana
GN=FHY3 PE=1 SV=1
Length = 839
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 12/176 (6%)
Query: 324 YTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLN 383
+ +L F +++ N +D +F S + C ++ LDTT +
Sbjct: 235 FKILLDFLSRMQSLNSNFFYAVDLGDDQRVKNVFWVDAKSRHNYGSFC-DVVSLDTTYVR 293
Query: 384 SKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQN 443
+KY+ L + + A++ E+ + W ++ A+ I +
Sbjct: 294 NKYKMPLAIFVGVNQHYQYMVLGCALISDESAATYSWLMETWLRAIGGQAPKVLITELDV 353
Query: 444 GLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFE 499
+N + E+F N H L H+ K++ ++ GQ + FM PKFE
Sbjct: 354 VMNSIVPEIFPNTRHCLFLWHVLMKVSENL-GQVVKQHDNFM----------PKFE 398
>sp|Q5UBY2|FRS1_ARATH Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1
PE=1 SV=1
Length = 687
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 569 GKMMETIYTRRVESNQWLTKL--------TPSKEDKLQKETAIARSFQVLHLQSSTFEV- 619
GK M +YTR + + L S+ED + K T + ++ Q+ +F V
Sbjct: 388 GKQMAEVYTREMFKKFQVEVLGGVACHPKKESEEDGVNKRTFRVQDYE----QNRSFVVV 443
Query: 620 -RGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRS--PYDYCSKYFTTESYRMT 676
ES+++V C+C+ + L G C HA+ VL+ G P Y K +T ++
Sbjct: 444 WNSESSEVV------CSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRWTKDAKSRE 497
Query: 677 YSESIQ 682
ES Q
Sbjct: 498 VMESDQ 503
>sp|A5F9B7|SYA_VIBC3 Alanine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=alaS PE=3 SV=1
Length = 860
Score = 37.0 bits (84), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 21/193 (10%)
Query: 285 PKDIADDIKREYGIQLNYSQAWRAKEIAREQLQ--GSYKDSYTLLPFFCEKIKETNPGSV 342
P D+ +D+ RE G ++ + +A E R++ + G + Y L IK
Sbjct: 404 PADLTNDVARERGFSIDEAGFEQAMEEQRQRAREAGQFGTDYNSL------IKSATNTEF 457
Query: 343 VTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGI 402
+T S R A +S G + ++ LD TP ++ G D GI
Sbjct: 458 CGYTASRGQSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGI 517
Query: 403 FPVAFAVVDAETEDN---WHWFLQELKSAVSTSQQITFIADFQN----GLNKSLAEVFDN 455
F V D + N H L + ++T Q+ I D + LN S +
Sbjct: 518 FHVE----DTQKLGNAIAHHGVLAQ--GVLATGDQVDAIVDEKRRAAISLNHSATHLLHA 571
Query: 456 CYHSYCLRHLAEK 468
H+A+K
Sbjct: 572 ALRKVLGEHVAQK 584
>sp|Q60P76|SAS6_CAEBR Spindle assembly abnormal protein 6 OS=Caenorhabditis briggsae
GN=sas-6 PE=3 SV=3
Length = 489
Score = 36.2 bits (82), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 658 RSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPIL-DESTQELVTVTPPPTRRP 710
R+P+ S T +TY SI P+PN R ++ D++T VT TPP R P
Sbjct: 438 RTPFRDTSSALNT---GLTYQNSITPLPNTTRFLMADDTTGSSVTNTPPVLRNP 488
>sp|Q56648|SYA_VIBCH Alanine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=alaS PE=3 SV=2
Length = 860
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 21/193 (10%)
Query: 285 PKDIADDIKREYGIQLNYSQAWRAKEIAREQLQ--GSYKDSYTLLPFFCEKIKETNPGSV 342
P D+ +D+ RE G ++ + +A E R++ + G + Y L IK
Sbjct: 404 PADLTNDVARERGFSIDEAGFEQAMEEQRQRAREAGQFGTDYNSL------IKSATNTEF 457
Query: 343 VTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGI 402
+T S R A +S G + ++ LD TP ++ G D GI
Sbjct: 458 CGYTASRGQSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGI 517
Query: 403 FPVAFAVVDAETEDN---WHWFLQELKSAVSTSQQITFIADFQN----GLNKSLAEVFDN 455
F V D + N H + + ++T Q+ I D + LN S +
Sbjct: 518 FHVE----DTQKLGNAIAHHGVIAQ--GVLATGDQVDAIVDEKRRAAISLNHSATHLLHA 571
Query: 456 CYHSYCLRHLAEK 468
H+A+K
Sbjct: 572 ALRKVLGEHVAQK 584
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8
PE=2 SV=2
Length = 725
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/312 (17%), Positives = 118/312 (37%), Gaps = 31/312 (9%)
Query: 313 REQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLF---VSFHASISGFQQ 369
R +L+G ++ L FF + I+ ++P + +D S +F A+ S F
Sbjct: 265 RLELRGGFR---ALQDFFFQ-IQLSSPNFLYLMDLADDGSLRNVFWIDARARAAYSHFGD 320
Query: 370 GCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAV 429
+L DTT L++ Y+ L+ + + ++ ++ + + W + + +
Sbjct: 321 ----VLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSFETYVWLFRAWLTCM 376
Query: 430 STSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDI-----KGQFSHEARRF 484
FI + + +++EVF +H L H+ + + + F R
Sbjct: 377 LGRPPQIFITEQCKAMRTAVSEVFPRAHHRLSLTHVLHNICQSVVQLQDSDLFPMALNRV 436
Query: 485 MINDLYAAAYAPKFEGF-----QCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDH 539
+ L + +E + E+I+ + D W P + +T+ GA
Sbjct: 437 VYGCLKVEEFETAWEEMIIRFGMTNNETIRDMFQDRELWA----PVYLKDTFLAGA---- 488
Query: 540 MTSNFGQQFYSWVSEAHELPITHMVDVLRG--KMMETIYTRRVESNQWLTKLTPSKEDKL 597
+T G ++ + T + + L G ++ YTR + KL P +
Sbjct: 489 LTFPLGNVAAPFIFSGYVHENTSLREFLEGYESFLDKKYTREALCDSESLKLIPKLKTTH 548
Query: 598 QKETAIARSFQV 609
E+ +A+ F +
Sbjct: 549 PYESQMAKVFTM 560
>sp|P91851|YUG4_CAEEL Uncharacterized protein F26H9.4 OS=Caenorhabditis elegans
GN=F26H9.4 PE=3 SV=1
Length = 223
Score = 32.7 bits (73), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 562 HMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIARSFQVLHLQSSTFEVRG 621
M++V R + ETI T+ VE ++P + K T I +F++ ++++T
Sbjct: 21 RMLEVARSHL-ETINTQVVEG-----IMSPVADSYNNKPTLIKSNFRIQMVRAAT----- 69
Query: 622 ESADIVDVDRWDCTCKTWHLT 642
+S+D + D W+CT TW T
Sbjct: 70 KSSDWIRADDWECTRTTWTRT 90
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12
PE=2 SV=1
Length = 788
Score = 32.7 bits (73), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 408 AVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAE 467
A+V E+++ + W Q A+S + + +AD + ++L +VF +H Y + E
Sbjct: 433 AMVADESKEAFLWLFQTWLRAMSGRRPRSIVADQDLPIQQALVQVFPGAHHRYSAWQIRE 492
Query: 468 KLNRDI---KGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEP 524
K ++ +F +E + +Y +F+ ++ + G+ D + +
Sbjct: 493 KERENLIPFPSEFKYEYEKC----IYQTQTIVEFDSVWSALINKYGLRDDVWLREIYEQR 548
Query: 525 EHWANTYF 532
E+W Y
Sbjct: 549 ENWVPAYL 556
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,552,869
Number of Sequences: 539616
Number of extensions: 11617346
Number of successful extensions: 32181
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 32169
Number of HSP's gapped (non-prelim): 23
length of query: 747
length of database: 191,569,459
effective HSP length: 125
effective length of query: 622
effective length of database: 124,117,459
effective search space: 77201059498
effective search space used: 77201059498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)