Query 004519
Match_columns 747
No_of_seqs 349 out of 1847
Neff 8.9
Searched_HMMs 13730
Date Tue Mar 26 18:38:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004519.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1825-1829//hhsearch_scop/004519hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ip9a_ d.15.2.2 (A:) Bud emer 96.8 0.0024 1.8E-07 36.9 7.0 61 28-92 18-78 (85)
2 d2c60a1 d.15.2.2 (A:43-122) Mi 93.8 0.15 1.1E-05 25.0 8.0 70 26-102 7-79 (80)
3 d2bkfa1 d.15.2.2 (A:1-85) Next 93.6 0.11 7.8E-06 26.0 6.5 71 26-101 9-82 (85)
4 d2nptb1 d.15.2.2 (B:42-123) Mi 93.1 0.2 1.4E-05 24.3 7.3 70 26-102 7-79 (82)
5 d1wj2a_ g.79.1.1 (A:) WRKY DNA 91.0 0.18 1.3E-05 24.5 4.9 46 211-256 24-70 (71)
6 d1wmha_ d.15.2.2 (A:) Protein 88.6 0.52 3.8E-05 21.4 8.6 64 27-92 6-70 (83)
7 d1oeya_ d.15.2.2 (A:) Neutroph 88.5 0.53 3.9E-05 21.4 6.0 64 26-93 10-73 (82)
8 d1oeyj_ d.15.2.2 (J:) Neutroph 79.6 1.3 9.3E-05 18.9 7.1 60 30-93 15-78 (105)
9 d1pqsa_ d.15.2.2 (A:) Cell div 76.7 1.5 0.00011 18.3 5.5 59 33-93 3-66 (77)
10 d1nc8a_ g.40.1.1 (A:) HIV nucl 71.4 0.86 6.3E-05 20.0 1.8 22 725-746 3-24 (29)
11 d2npta1 d.15.2.2 (A:4-108) Mit 69.0 2.3 0.00017 17.1 8.1 60 30-93 23-84 (105)
12 d2exfa1 g.40.1.1 (A:12-53) HIV 62.7 1.6 0.00011 18.3 1.7 18 729-746 23-40 (42)
13 d1a6bb_ g.40.1.1 (B:) Zinc fin 45.9 4.4 0.00032 15.3 1.7 19 728-746 10-28 (40)
14 d1wmhb_ d.15.2.2 (B:) Partitio 30.4 9.8 0.00072 13.0 7.6 70 29-102 9-80 (82)
15 d1c6va_ c.55.3.2 (A:) Retrovir 23.6 13 0.00094 12.2 5.3 64 374-447 6-69 (159)
16 d2zeqa1 d.15.1.1 (A:1-78) Ubiq 23.4 13 0.00095 12.2 5.0 42 26-67 7-48 (78)
17 d1dsqa_ g.40.1.1 (A:) Nucleic 23.1 13 0.00096 12.1 1.8 17 730-746 4-20 (26)
18 d1ogwa_ d.15.1.1 (A:) Ubiquiti 21.4 14 0.001 11.9 5.4 42 26-67 5-46 (76)
No 1
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.76 E-value=0.0024 Score=36.93 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=50.7
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf 73583368991599884458999998805999814999980499876146307077999996305
Q 004519 28 YNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLG 92 (747)
Q Consensus 28 Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~ 92 (747)
+-+++++.+.+..+++|.+|..+|...|+. +++.+||.-. +.+++.+.+|+||..+++...
T Consensus 18 ~~~~D~~~~~l~~~it~~dL~~kI~~rf~~--~~~~lkY~De--dgd~v~i~sD~Dl~~ai~~~~ 78 (85)
T d1ip9a_ 18 YYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF--DGSGEEIKTDSQVSNIIQAKL 78 (85)
T ss_dssp CBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS--SSCCSCCCSHHHHHHHHHTTC
T ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHHCC--CCEEEEEECC--CCCEEEEECHHHHHHHHHHCC
T ss_conf 989929999937998899999999998587--8368999968--999789837899999997228
No 2
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.77 E-value=0.15 Score=24.99 Aligned_cols=70 Identities=16% Similarity=0.447 Sum_probs=57.4
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCC---CEEEEEEE
Q ss_conf 797358336899159988445899999880599981499998049987614630707799999630585---65999970
Q 004519 26 LSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDT---ATVDVFIQ 102 (747)
Q Consensus 26 ~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~---~~~~i~~~ 102 (747)
.+|. ||.+++.+.|-..|.++..|+-..|| +++.++|. |.--+|++.+.+||..-++..+.+ .++.|.+.
T Consensus 7 fE~~-gEkRIi~f~RPv~~~dl~~kv~~afG---q~ldl~y~---n~El~IPl~~Q~DLDkAvellDrs~~~ksLrilL~ 79 (80)
T d2c60a1 7 FEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 79 (80)
T ss_dssp EEET-TEEEEEEECSSCCHHHHHHHHHHHHS---SCCEEEEE---CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 8863-70689952788429999999999859---83646775---67178852567778999998716966330699973
No 3
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.62 E-value=0.11 Score=26.03 Aligned_cols=71 Identities=17% Similarity=0.338 Sum_probs=51.6
Q ss_pred EEEECCCEEE--EEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCC-EEEEEE
Q ss_conf 7973583368--991599884458999998805999814999980499876146307077999996305856-599997
Q 004519 26 LSYNGGEAYA--IDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTA-TVDVFI 101 (747)
Q Consensus 26 ~~Y~gg~~~~--~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~~-~~~i~~ 101 (747)
+.| ||++.- +..+.+++|.+|..+|...++++ .+.+||.=.. .+.+.+.+|+||+..++...... .+.+.+
T Consensus 9 vtf-~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~--~~~lkY~Ddd--~e~v~l~~d~dl~E~~~~a~~~~~~irl~v 82 (85)
T d2bkfa1 9 VTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEE--NEEVSINSQGEYEEALKMAVKQGNQLQMQV 82 (85)
T ss_dssp EEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTT--SCEEEECSHHHHHHHHHHHHHTTTEEEEEE
T ss_pred EEE-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCC--CCEEEEECCC--CCEEEEECHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 998-7845899964887776999999999866966--4138987599--998998068889999999866898899999
No 4
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.06 E-value=0.2 Score=24.25 Aligned_cols=70 Identities=14% Similarity=0.422 Sum_probs=57.3
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCC---CEEEEEEE
Q ss_conf 797358336899159988445899999880599981499998049987614630707799999630585---65999970
Q 004519 26 LSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDT---ATVDVFIQ 102 (747)
Q Consensus 26 ~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~---~~~~i~~~ 102 (747)
.+|. ||.+++.+.|-..|.++..|+-..|| +++.++|. |..-+|++.+.+||..-++..+.+ .++.|.+.
T Consensus 7 fE~~-gEkRIi~f~RPv~~~dl~~kv~~afG---q~ldl~y~---n~EL~IPl~~Q~DLDkAvellDrs~~~ksLrilL~ 79 (82)
T d2nptb1 7 FEHR-GEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV 79 (82)
T ss_dssp EEET-TEEEEEEECSSCCHHHHHHHHHHHHT---SCEEEEEE---ETTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 8863-70689952788438999999999859---84668885---67688862567778999998716966342689999
No 5
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=91.02 E-value=0.18 Score=24.53 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=37.9
Q ss_pred EECC-CEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 6408-839999964379971899997078642999952786422476
Q 004519 211 KKND-SHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGA 256 (747)
Q Consensus 211 ~ks~-~~r~~~~C~~~gCpwri~a~~~~~~~~~~V~~~~~~Htc~~~ 256 (747)
++++ ..|-.++|...||+++-.+-+..+.....+.++.+.|||...
T Consensus 24 ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P 70 (71)
T d1wj2a_ 24 VKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 70 (71)
T ss_dssp CTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCC
T ss_conf 25998710897845147987442888769999999998357089888
No 6
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.55 E-value=0.52 Score=21.44 Aligned_cols=64 Identities=14% Similarity=0.334 Sum_probs=51.7
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCC-CEEEEEEECCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf 9735833689915998844589999988059998-14999980499876146307077999996305
Q 004519 27 SYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSAD-TMSIKYFLPGNKKTLISISKDKDFKRMLNFLG 92 (747)
Q Consensus 27 ~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~-~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~ 92 (747)
.+-+|..-+..++.+++|.+|..++.+++++... .+++||.-.. .++..|+++..|..-+..+.
T Consensus 6 ~~y~G~i~it~~~~~it~e~l~~evr~~C~f~~~q~fT~KWiDeE--GDPCTISSQmEL~EA~RLye 70 (83)
T d1wmha_ 6 AYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE--GDPCTVSSQLELEEAFRLYE 70 (83)
T ss_dssp EEETTEEEEEEECTTCCHHHHHHHHHHHTTCCTTCCCEEEEECTT--SCEEECCSHHHHHHHHHHHH
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCC--CCCEEEECHHHHHHHHHHHH
T ss_conf 985675999943887559999999999848986796778877479--99506554887999999997
No 7
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.48 E-value=0.53 Score=21.41 Aligned_cols=64 Identities=13% Similarity=0.305 Sum_probs=53.5
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC
Q ss_conf 79735833689915998844589999988059998149999804998761463070779999963058
Q 004519 26 LSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGD 93 (747)
Q Consensus 26 ~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~ 93 (747)
+.|. -|-.|.+.++.+++.|...|++.+.+-.+..++.|. |.+...+++++ |++++.+..-..+
T Consensus 10 Vh~~--fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~-~~~~~e~v~ls-ee~me~aWs~v~~ 73 (82)
T d1oeya_ 10 VHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR-PRDSNELVPLS-EDSMKDAWGQVKN 73 (82)
T ss_dssp EESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC-CTTCSSCEECC-TTTHHHHHTTCBT
T ss_pred EEEE--EEEEEECCCCCCHHHHHHHHHHHHCCCHHHEEEEEC-CCCCCCEECCC-HHHHHHHHHHCCC
T ss_conf 9999--999998069998799999999884798336499851-47788454255-6789999985239
No 8
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.64 E-value=1.3 Score=18.88 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=49.1
Q ss_pred CCCEEEEEECCCC----CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC
Q ss_conf 5833689915998----844589999988059998149999804998761463070779999963058
Q 004519 30 GGEAYAIDIDEET----EFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGD 93 (747)
Q Consensus 30 gg~~~~~~v~~~~----s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~ 93 (747)
|+.++-|.|..+. +|.+|+.-+...|+ ...+.+-|--+..+ ||.|.+|+|+.-|+.....
T Consensus 15 ~~~~rDI~veedl~~~P~ykdLl~lmr~~f~--~~dIaLNYrD~eGD--LIRllddeDv~LMv~~~~~ 78 (105)
T d1oeyj_ 15 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ--REDIALNYRDAEGD--LVRLLSDEDVALMVRQARG 78 (105)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC--CSSEEEEEECTTSC--EEECCSHHHHHHHHHHCCC
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHC--CCEEEEEEECCCCC--EEEECCHHHHHHHHHHHCC
T ss_conf 6403127872001339459999999997735--00067630468898--8998361258999987416
No 9
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=76.74 E-value=1.5 Score=18.33 Aligned_cols=59 Identities=12% Similarity=0.294 Sum_probs=45.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCC-----CEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC
Q ss_conf 3689915998844589999988059998-----149999804998761463070779999963058
Q 004519 33 AYAIDIDEETEFSGFKSEVAEMFNCSAD-----TMSIKYFLPGNKKTLISISKDKDFKRMLNFLGD 93 (747)
Q Consensus 33 ~~~~~v~~~~s~~~~~~~l~~~~~~~~~-----~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~ 93 (747)
...+.|..+++|.+|.+++...+-...+ ..++||+- ++.+.+.+.+|+|+..-+++-..
T Consensus 3 ~fTLvV~~~i~f~~L~~kI~~Kia~~~~~~~~~~~rlrY~D--eDGD~V~i~sddd~~~a~~~~~e 66 (77)
T d1pqsa_ 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD--EDGDFVVLGSDEDWNVAKEMLAE 66 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE--TTTEEEECCSTTHHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC--CCCCEEEEECCCHHHHHHHHHHH
T ss_conf 39999976767899999999999743677877520478874--89999998453269999999986
No 10
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=71.38 E-value=0.86 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.788 Sum_probs=19.6
Q ss_pred CCCEEECCCCCCCCCCCCCCCC
Q ss_conf 6621556877878857678999
Q 004519 725 IKRSLQCSKCKGLGHNKKTCKD 746 (747)
Q Consensus 725 ~kr~~~Cs~C~~~GHn~~tC~~ 746 (747)
.+++++|-+|+.+||..+.|.+
T Consensus 3 qr~~ikCfNCGkeGH~ar~CrA 24 (29)
T d1nc8a_ 3 QRKVIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCCCCBCTTTSCBSSCGGGCCS
T ss_pred CCCEEEEECCCCCCHHHHHCCC
T ss_conf 7536676527863230544467
No 11
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.99 E-value=2.3 Score=17.14 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=45.6
Q ss_pred CCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC
Q ss_conf 5833689915--998844589999988059998149999804998761463070779999963058
Q 004519 30 GGEAYAIDID--EETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGD 93 (747)
Q Consensus 30 gg~~~~~~v~--~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~ 93 (747)
||.+. |.|. +.++|.++++.+...+.- .....|.|. .++.+=|.|.+|+.|+.|++.|..
T Consensus 23 ~~~vD-w~V~~~~~l~F~dvL~~i~q~~p~-at~taFEYE--DEdGDRITVRSDEEl~AMisyy~~ 84 (105)
T d2npta1 23 SGAVD-WTVHSGPQLLFRDVLDVIGQVLPE-ATTTAFEYE--DEDGDRITVRSDEEMKAMLSYYYS 84 (105)
T ss_dssp TEEEE-EEECC--CCCHHHHHHHHHHHSTT-SCCSEEEEE--CTTSCEEEECSHHHHHHHHHHHHH
T ss_pred CCEEE-EEECCCCEEEHHHHHHHHHHHCCC-CCCCCEEEC--CCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 86265-453488643399999999986634-454210302--565887687267999999999999
No 12
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=62.66 E-value=1.6 Score=18.28 Aligned_cols=18 Identities=39% Similarity=0.818 Sum_probs=16.0
Q ss_pred EECCCCCCCCCCCCCCCC
Q ss_conf 556877878857678999
Q 004519 729 LQCSKCKGLGHNKKTCKD 746 (747)
Q Consensus 729 ~~Cs~C~~~GHn~~tC~~ 746 (747)
..|-+|+..||-.+.||.
T Consensus 23 ~~C~~Cg~~GH~~~~Cp~ 40 (42)
T d2exfa1 23 KGCWKCGKEGHQMKDCTE 40 (42)
T ss_dssp SSCSSSCCSSSCTTTCCS
T ss_pred CCCCCCCCCCEECCCCCC
T ss_conf 823367897813053979
No 13
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=45.93 E-value=4.4 Score=15.30 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=17.2
Q ss_pred EEECCCCCCCCCCCCCCCC
Q ss_conf 1556877878857678999
Q 004519 728 SLQCSKCKGLGHNKKTCKD 746 (747)
Q Consensus 728 ~~~Cs~C~~~GHn~~tC~~ 746 (747)
.-+|-+|+..||=.+-||+
T Consensus 10 kDQCAyCke~GHW~~dCPk 28 (40)
T d1a6bb_ 10 RDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSS
T ss_pred CHHHHHHHHCCCHHHHCCC
T ss_conf 0163777534705430866
No 14
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.36 E-value=9.8 Score=12.98 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=52.5
Q ss_pred ECCCEEEEEECC--CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 358336899159--98844589999988059998149999804998761463070779999963058565999970
Q 004519 29 NGGEAYAIDIDE--ETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQ 102 (747)
Q Consensus 29 ~gg~~~~~~v~~--~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~~~~~i~~~ 102 (747)
-|.|-+-+++++ .-+|.+|-.-|..+-.+..-++.+-|.-|. .+|.||.||+.+..-+.-. ..-++|++.
T Consensus 9 FdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l~~~~f~i~Y~D~h--gDLLPINNDdNf~kA~~sa--~PlLRi~iQ 80 (82)
T d1wmhb_ 9 FDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAH--GDLLPLTNDDSLHRALASG--PPPLRLLVQ 80 (82)
T ss_dssp ETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTT--SCEEECCSHHHHHHHTTSS--SSCEEEEEE
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC--CCCCCCCCCHHHHHHHHHC--CCCEEEEEE
T ss_conf 67467774215555568899999999972778886799986699--9741613835899998716--970237677
No 15
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=23.60 E-value=13 Score=12.19 Aligned_cols=64 Identities=20% Similarity=0.127 Sum_probs=40.8
Q ss_pred EEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
Q ss_conf 89970643577642048999985099981788999963378641999999978621899868999348610678
Q 004519 374 LLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNK 447 (747)
Q Consensus 374 vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~plafaiv~~E~~e~~~wfl~~l~~~~~~~~~~~iisD~~~~l~~ 447 (747)
+..+|-||+.++| +.+.+|.. .-+..|+ .+.+++.+...-||..+....+ +..|.||......+
T Consensus 6 ~W~~D~t~~~~k~-----il~~vD~~-Sr~~~~~-~~~~~~a~~v~~~l~~~~~~~~---~~~I~sDnG~~F~~ 69 (159)
T d1c6va_ 6 TWQMDCTHLEGKI-----VIVAVHVA-SGFIEAE-VIPQETGRQTALFLLKLAGRWP---ITHLHTDNGANFAS 69 (159)
T ss_dssp EEEEEEEEETTEE-----EEEEECTT-SCCEEEE-ECSSCSHHHHHHHHHHHHTTSC---CCEEECCCCSSTTS
T ss_pred CEEEEEEEECCEE-----EEEEEECC-CCEEEEE-EEECCCHHHHHHHHHHHHHCCC---CCEEEECCCCCCCC
T ss_conf 6406999989989-----99999778-9819999-9606678999999998763158---74057447874333
No 16
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.40 E-value=13 Score=12.17 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=37.1
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 797358336899159988445899999880599981499998
Q 004519 26 LSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYF 67 (747)
Q Consensus 26 ~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~ 67 (747)
+++..|++..+.|+.+.+..++..++.+..++......+-|-
T Consensus 7 Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 48 (78)
T d2zeqa1 7 VRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFA 48 (78)
T ss_dssp EESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEEE
T ss_conf 993999889999816650999999999877849158378774
No 17
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=23.13 E-value=13 Score=12.13 Aligned_cols=17 Identities=41% Similarity=0.948 Sum_probs=15.1
Q ss_pred ECCCCCCCCCCCCCCCC
Q ss_conf 56877878857678999
Q 004519 730 QCSKCKGLGHNKKTCKD 746 (747)
Q Consensus 730 ~Cs~C~~~GHn~~tC~~ 746 (747)
-|--|+..||-++.|+.
T Consensus 4 vcfscgktghikkdck~ 20 (26)
T d1dsqa_ 4 VCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp BCTTTCCBSSCTTTTTC
T ss_pred EEEECCCCCCCHHHHHH
T ss_conf 77756876651135565
No 18
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.41 E-value=14 Score=11.91 Aligned_cols=42 Identities=7% Similarity=0.237 Sum_probs=37.3
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 797358336899159988445899999880599981499998
Q 004519 26 LSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYF 67 (747)
Q Consensus 26 ~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~ 67 (747)
++...|++..+.|+.+.+-.+|..++....++..+..++-|.
T Consensus 5 Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~ 46 (76)
T d1ogwa_ 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp EEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHEEEEEC
T ss_conf 995999999999789783999997530324989588773778
Done!