BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004520
(747 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
S+ +LVLGK GVGKS+T+NS+ + FQ V ++ G + IDTPG +
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95
Query: 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 241
+ N + + +K F+ D++LY +RLD+ ++ D ++ +T+ FG IW
Sbjct: 96 EAGYVN----HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 242 FNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVSDARLENQ-----VLL 296
T+LV+TH+ + P+ SYE++ ++ +D + + I + E + V+
Sbjct: 152 CKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVY 206
Query: 297 VENHPQCRRNVKGEQILPNGQIW 319
EN +C +N K E+ LPNG+ W
Sbjct: 207 AENSGRCSKNDKDEKALPNGEAW 229
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
S+ +LVLGK GVGKS+T+NS+ + FQ V ++ G + IDTPG +
Sbjct: 35 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 94
Query: 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 241
+ N + + +K F+ D++LY +RLD+ ++ D ++ +T+ FG IW
Sbjct: 95 EAGYVN----HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 150
Query: 242 FNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVSDARLENQ-----VLL 296
T+LV+TH+ + P+ SYE++ ++ +D + + I + E + V+
Sbjct: 151 CKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVY 205
Query: 297 VENHPQCRRNVKGEQILPNGQIW 319
EN +C +N K E+ LPNG+ W
Sbjct: 206 AENSGRCSKNDKDEKALPNGEAW 228
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
S+ +LVLGK GVGKS+T+NS+ + FQ V ++ G + IDTPG +
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95
Query: 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 241
+ N + + +K F+ D++LY +RLD+ + D ++ +T+ FG IW
Sbjct: 96 EAGYVN----HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 242 FNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVSDARLENQ-----VLL 296
T+LV+TH+ + P+ SYE++ ++ +D + + I + E + V+
Sbjct: 152 CKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVY 206
Query: 297 VENHPQCRRNVKGEQILPNGQIW 319
EN +C +N K E+ LPNG+ W
Sbjct: 207 AENSGRCSKNDKDEKALPNGEAW 229
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
S+ +LVLGK GVGKS+T+NS+ + FQ V ++ G + IDTPG +
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95
Query: 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 241
+ N + + +K F+ D++LY +RLD+ + D ++ +T+ FG IW
Sbjct: 96 EAGYVN----HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 242 FNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVSDARLENQ-----VLL 296
T+LV+TH+ + P+ SYE++ ++ +D + + I + E + V+
Sbjct: 152 CKTLLVLTHAQFSPPD-----ELSYETFSSKRSDELLKTIRAGSKMRKQEFEDSAIAVVY 206
Query: 297 VENHPQCRRNVKGEQILPNGQIW 319
EN +C +N K E+ LPNG+ W
Sbjct: 207 AENSGRCSKNDKDEKALPNGEAW 229
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
S+ ILV+GK GVGKS+T+NSI + FQ V S G + IDTPG +
Sbjct: 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98
Query: 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 241
N + +K F+ D++LY +RLD + D + K +T+ FG IW
Sbjct: 99 EGGYIN----DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 154
Query: 242 FNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVS---DARLEN-QVLLV 297
I+ +TH+ + P+G Y+ + ++ ++ + Q + S DA+ + V+L+
Sbjct: 155 NKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLI 209
Query: 298 ENHPQCRRNVKGEQILPNGQIW 319
EN +C +N E++LPNG W
Sbjct: 210 ENSGRCNKNDSDEKVLPNGIAW 231
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 13/202 (6%)
Query: 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
S+ ILV GK GVGKS+T+NSI + FQ V S G + IDTPG +
Sbjct: 39 SLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLI 98
Query: 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 241
N + +K F+ D++LY +RLD + D + K +T+ FG IW
Sbjct: 99 EGGY----INDXALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 154
Query: 242 FNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVS---DARLEN-QVLLV 297
I+ +TH+ + P+G Y+ + ++ ++ + Q + S DA+ + V+L+
Sbjct: 155 NKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLI 209
Query: 298 ENHPQCRRNVKGEQILPNGQIW 319
EN +C +N E++LPNG W
Sbjct: 210 ENSGRCNKNDSDEKVLPNGIAW 231
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 123 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTP--- 178
+RI+++GKTG GKSA NSI + E+ Q T + +GS ++ IDTP
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDXF 82
Query: 179 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 238
+ C K ++ L + P ++L +L + D + + E+FG
Sbjct: 83 SWKDHCEALYKEVQRCYL-----LSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGE 135
Query: 239 AIWFNTILVMTH 250
+TI++ TH
Sbjct: 136 DAXGHTIVLFTH 147
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 123 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
+RI+++GKTG GKSA NSI + E+ Q T + +GS ++ IDTP
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82
Query: 182 P---SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 238
C K ++ L + P ++L +L + D + + E+FG
Sbjct: 83 SWKDHCEALYKEVQRCYL-----LSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGE 135
Query: 239 AIWFNTILVMTH 250
+TI++ TH
Sbjct: 136 DAMGHTIVLFTH 147
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 123 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
+RI+++GKTG GKSA NSI + E+ Q T + +GS ++ IDTP
Sbjct: 3 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 62
Query: 182 P---SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 238
C K ++ L + P ++L +L + D + + E+FG
Sbjct: 63 SWKDHCEALYKEVQRCYL-----LSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGE 115
Query: 239 AIWFNTILVMTH 250
+TI++ TH
Sbjct: 116 DAMGHTIVLFTH 127
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 123 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
+RI+++GKTG GKSA NSI + E+ Q T + +GS ++ IDTP
Sbjct: 6 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 65
Query: 182 P---SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 238
C K ++ L + P ++L +L + D + + E+FG
Sbjct: 66 SWKDHCEALYKEVQRCYL-----LSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGE 118
Query: 239 AIWFNTILVMTH 250
+TI++ TH
Sbjct: 119 DAMGHTIVLFTH 130
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 123 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
+RI+++GKTG GKSAT NSI + + A + T + S ++ +DTPG
Sbjct: 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89
Query: 182 PSCVRNVKRNRKIMLSV 198
+ V N + +++I+ +
Sbjct: 90 DTEVPNAETSKEIIRCI 106
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 12/71 (16%)
Query: 121 FSIRILVLGKTGVGKSATINSIF-DQTKTETDAFQ-----PATDCIREV-----KGSVNG 169
F I+V+G++G+GKS +N++F Q + ++ P T I+ + +G V
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVK- 59
Query: 170 IKVTFIDTPGF 180
+K+T IDTPGF
Sbjct: 60 MKLTVIDTPGF 70
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 115 GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVT 173
G P+ D+ ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 18 GSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 77
Query: 174 FIDTPG 179
DT G
Sbjct: 78 IWDTAG 83
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 116 IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTF 174
+P+ D+ ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 175 IDTPG 179
DT G
Sbjct: 63 WDTAG 67
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 116 IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTF 174
+P+ D+ ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 175 IDTPG 179
DT G
Sbjct: 63 WDTAG 67
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTFI 175
P+ D+ ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 1 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 176 DTPG 179
DT G
Sbjct: 61 DTAG 64
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTFI 175
P+ D+ ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 176 DTPG 179
DT G
Sbjct: 63 DTAG 66
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTFI 175
P+ D+ ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 176 DTPG 179
DT G
Sbjct: 88 DTAG 91
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTFI 175
P+ D+ ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 176 DTPG 179
DT G
Sbjct: 71 DTAG 74
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 19/74 (25%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVN----------- 168
F ++V+G++G+GKS INS+F TD + P +K +V
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLF-----LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG 84
Query: 169 GIK--VTFIDTPGF 180
G++ +T +DTPGF
Sbjct: 85 GVQLLLTIVDTPGF 98
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTFI 175
P+ D+ ++L++G +GVGK+ + D T TE+ D IR ++ IK+
Sbjct: 11 PEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 176 DTPG 179
DT G
Sbjct: 71 DTAG 74
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 31/80 (38%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--------- 171
F ++V+G++G+GKS INS+F TD + P E G + IK
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLF-----LTDLYSP------EYPGPSHRIKKTVQVEQSK 50
Query: 172 -----------VTFIDTPGF 180
+T +DTPGF
Sbjct: 51 VLIKEGGVQLLLTIVDTPGF 70
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 31/80 (38%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--------- 171
F ++V+G++G+GKS INS+F TD + P E G + IK
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLF-----LTDLYSP------EYPGPSHRIKKTVQVEQSK 55
Query: 172 -----------VTFIDTPGF 180
+T +DTPGF
Sbjct: 56 VLIKEGGVQLLLTIVDTPGF 75
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR----------EVKGSVNGI 170
F ++V+G++G+GKS INS+F A + I E++ +
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 171 KVTFIDTPGF 180
++T +DTPG+
Sbjct: 96 RLTVVDTPGY 105
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTFI 175
P+ D+ ++L++G +GVGKS + D T T++ D IR + +K+
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 176 DTPG 179
DT G
Sbjct: 64 DTAG 67
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGIKVTFI 175
P+ D ++L++G +GVGKS + D T TE+ D IR ++ IK+
Sbjct: 1 PEYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 176 DTPG 179
DT G
Sbjct: 61 DTAG 64
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFID 176
P++ +I++ ++G+ VGKS N+I ++ + T + + ++G K F+D
Sbjct: 175 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 234
Query: 177 TPGF 180
T G
Sbjct: 235 TAGL 238
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 124 RILVLGKTGVGKSATINSIFDQTK 147
R++++G+TG GKSAT NSI Q +
Sbjct: 23 RLILVGRTGAGKSATGNSILGQRR 46
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR----------EVKGSVNGI 170
F ++V+G++G+GKS INS+F A + I E++ +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 171 KVTFIDTPGF 180
++T +DTPG+
Sbjct: 64 RLTVVDTPGY 73
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 28/129 (21%)
Query: 47 PLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRA 106
P V+I D +KFL+ R LA V+ H L G+ D R RA
Sbjct: 38 PAVRI-DGYIKFLKDFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRA 96
Query: 107 IAREQEAT------------------GIPD--LDFSIR----ILVLGKTGVGKSATINSI 142
Q + G+PD L+ R ILV G TG GKS TI S+
Sbjct: 97 NVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASM 156
Query: 143 FD---QTKT 148
D QTK+
Sbjct: 157 IDYINQTKS 165
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG---------IK 171
F IL +G+TG+GKS ++++F+ TK E + PAT V+ N +K
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFN-TKFEGE---PATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 172 VTFIDTPGF 180
+T + T GF
Sbjct: 97 LTIVSTVGF 105
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 116 IPDLDFSIRILVLGKTGVGKSATINSIFDQ-TKTETDAFQPATDCIREVKGSVNGIKVTF 174
+PD F I+V G+ VGKS+ +N++ Q +D TD + + VT
Sbjct: 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTL 87
Query: 175 IDTPGF 180
+DTPG
Sbjct: 88 VDTPGL 93
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR----------EVKGSVNGI 170
F + V+G++G+GKS INS+F A + I E++ +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 171 KVTFIDTPGF 180
++T +DTPG+
Sbjct: 77 RLTVVDTPGY 86
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSVNGIKVTFIDTPGF 180
+ ++GK VGKS +N++ TK + + T +R VK N ++ F+DTPG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLG-TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 68
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPG 179
+ ++G GK+ +++I TE +A T I + +VN K+TF+DTPG
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEA-GGITQHIGAYQVTVNDKKITFLDTPG 64
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSVNGIKVTFIDTPGF 180
+ ++GK VGKS +N++ TK + + T +R VK N ++ F+DTPG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLG-TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR----------EVKGSVNGI 170
F + V+G++G+GKS INS+F A + I E++ +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 171 KVTFIDTPGF 180
++T +DTPG+
Sbjct: 96 RLTVVDTPGY 105
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 119 LDFSIRILVLGKTGVGKSATINSIFDQTKT-ETDAFQPATDCIREVKGSVNGIKVTFIDT 177
L+ +R++++GK VGKS +N + ++ + TD D I E + + GI +DT
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISE-EIVIRGILFRIVDT 298
Query: 178 PG 179
G
Sbjct: 299 AG 300
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|C Chain C, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|D Chain D, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 378 AENEIDEILASEIDEEDEYDQLPPIKILKKSQFERLSKSQKKSYLDELDYREILYFK 434
E EI E + S + E YDQ+PP KK + ERL K ++ + L + + FK
Sbjct: 95 TEEEIREAIFSFVGE---YDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFK 148
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 309
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 378 AENEIDEILASEIDEEDEYDQLPPIKILKKSQFERLSKSQKKSYLDELDYREILYFK 434
E EI E + S + E YDQ+PP KK + ERL K ++ + L + + FK
Sbjct: 95 TEEEIREAIFSFVGE---YDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFK 148
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In
Substrate Recognition And Catalysis By Pseudouridine 55
Synthase
Length = 309
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 378 AENEIDEILASEIDEEDEYDQLPPIKILKKSQFERLSKSQKKSYLDELDYREILYFK 434
E EI E + S + E YDQ+PP KK + ERL K ++ + L + + FK
Sbjct: 95 TEEEIREAIFSFVGE---YDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFK 148
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE2|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 378 AENEIDEILASEIDEEDEYDQLPPIKILKKSQFERLSKSQKKSYLDELDYREILYFK 434
E EI E + S + E YDQ+PP KK + ERL K ++ + L + + FK
Sbjct: 95 TEEEIREAIFSFVGE---YDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFK 148
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181
+IR L++G VGKS IN + + +T T + VK G ++ +DTPG L
Sbjct: 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---VGKELELLDTPGIL 176
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 48/129 (37%), Gaps = 28/129 (21%)
Query: 47 PLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRA 106
P V+I D +KFL+ R LA V H L G+ D R RA
Sbjct: 38 PAVRI-DGYIKFLKDFPRLTPEDTQKLAYSVXSEKHRQKLEENGQVDFSFGVRGVGRFRA 96
Query: 107 IAREQEAT------------------GIPD--LDFSIR----ILVLGKTGVGKSATINSI 142
Q + G+PD L+ R ILV G TG GKS TI S
Sbjct: 97 NVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKXGLILVTGPTGSGKSTTIASX 156
Query: 143 FD---QTKT 148
D QTK+
Sbjct: 157 IDYINQTKS 165
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 48/129 (37%), Gaps = 28/129 (21%)
Query: 47 PLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRA 106
P V+I D +KFL+ R LA V H L G+ D R RA
Sbjct: 27 PAVRI-DGYIKFLKDFPRLTPEDTQKLAYSVXSEKHRQKLEENGQVDFSFGVRGVGRFRA 85
Query: 107 IAREQEAT------------------GIPD--LDFSIR----ILVLGKTGVGKSATINSI 142
Q + G+PD L+ R ILV G TG GKS TI S
Sbjct: 86 NVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKXGLILVTGPTGSGKSTTIASX 145
Query: 143 FD---QTKT 148
D QTK+
Sbjct: 146 IDYINQTKS 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,474,425
Number of Sequences: 62578
Number of extensions: 833066
Number of successful extensions: 2099
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2035
Number of HSP's gapped (non-prelim): 62
length of query: 747
length of database: 14,973,337
effective HSP length: 106
effective length of query: 641
effective length of database: 8,340,069
effective search space: 5345984229
effective search space used: 5345984229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)