Query 004520
Match_columns 747
No_of_seqs 419 out of 3506
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 00:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00993 3a0901s04IAP86 chlor 100.0 3E-218 7E-223 1818.1 55.9 712 20-738 22-756 (763)
2 PF11886 DUF3406: Domain of un 100.0 6E-131 1E-135 1002.8 27.9 273 463-735 1-273 (273)
3 cd01853 Toc34_like Toc34-like 100.0 5.2E-38 1.1E-42 327.7 21.4 241 100-341 9-249 (249)
4 TIGR00991 3a0901s02IAP34 GTP-b 100.0 2.1E-36 4.6E-41 322.4 19.9 251 120-383 36-294 (313)
5 COG1160 Predicted GTPases [Gen 99.9 8.5E-27 1.9E-31 256.4 13.1 230 19-256 40-304 (444)
6 PF04548 AIG1: AIG1 family; I 99.9 2.1E-23 4.5E-28 212.5 11.0 203 123-342 1-207 (212)
7 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 1.4E-21 3E-26 195.6 15.9 156 123-291 1-159 (196)
8 TIGR03594 GTPase_EngA ribosome 99.8 9.5E-18 2.1E-22 186.7 17.8 201 45-254 70-296 (429)
9 PRK00093 GTP-binding protein D 99.8 2.2E-17 4.7E-22 184.4 18.8 200 46-254 73-297 (435)
10 PF02421 FeoB_N: Ferrous iron 99.7 9.9E-18 2.2E-22 164.1 10.7 122 123-258 1-122 (156)
11 PRK03003 GTP-binding protein D 99.7 4.4E-17 9.6E-22 184.7 17.0 202 46-255 110-336 (472)
12 COG1159 Era GTPase [General fu 99.7 1.1E-16 2.3E-21 169.1 14.4 125 121-257 5-130 (298)
13 PRK09518 bifunctional cytidyla 99.7 1.3E-16 2.9E-21 189.1 16.6 202 46-255 347-575 (712)
14 COG0486 ThdF Predicted GTPase 99.7 3.1E-16 6.7E-21 173.9 15.0 159 117-287 212-377 (454)
15 PF01926 MMR_HSR1: 50S ribosom 99.7 9.3E-16 2E-20 140.5 14.2 116 124-250 1-116 (116)
16 COG1160 Predicted GTPases [Gen 99.7 6.3E-16 1.4E-20 171.1 13.2 122 123-255 4-126 (444)
17 TIGR00436 era GTP-binding prot 99.6 1.6E-14 3.5E-19 152.3 14.5 119 124-254 2-120 (270)
18 COG0218 Predicted GTPase [Gene 99.5 6.3E-14 1.4E-18 141.4 14.1 127 121-257 23-151 (200)
19 cd01850 CDC_Septin CDC/Septin. 99.5 8E-14 1.7E-18 148.2 15.3 127 120-257 2-159 (276)
20 PRK00089 era GTPase Era; Revie 99.5 1.2E-13 2.7E-18 146.5 14.9 123 121-254 4-126 (292)
21 cd01858 NGP_1 NGP-1. Autoanti 99.5 1.5E-13 3.2E-18 133.1 12.8 131 47-180 2-157 (157)
22 cd04163 Era Era subfamily. Er 99.5 4.7E-13 1E-17 125.8 15.5 122 122-254 3-124 (168)
23 TIGR03598 GTPase_YsxC ribosome 99.5 4.2E-13 9E-18 132.2 15.5 126 120-255 16-143 (179)
24 cd04164 trmE TrmE (MnmE, ThdF, 99.5 4.5E-13 9.7E-18 125.9 15.0 122 123-257 2-123 (157)
25 KOG1191 Mitochondrial GTPase [ 99.5 1.1E-13 2.5E-18 153.6 12.6 136 116-256 262-404 (531)
26 cd01894 EngA1 EngA1 subfamily. 99.5 3.6E-13 7.7E-18 126.8 13.4 119 126-255 1-119 (157)
27 COG3596 Predicted GTPase [Gene 99.5 2.4E-13 5.2E-18 142.5 12.8 155 119-283 36-195 (296)
28 cd01895 EngA2 EngA2 subfamily. 99.5 6.5E-13 1.4E-17 126.3 14.7 125 122-255 2-127 (174)
29 TIGR03596 GTPase_YlqF ribosome 99.5 3.5E-13 7.5E-18 143.0 14.0 147 37-186 5-179 (276)
30 TIGR03594 GTPase_EngA ribosome 99.5 3.9E-13 8.5E-18 149.8 14.9 122 124-256 1-122 (429)
31 PRK09563 rbgA GTPase YlqF; Rev 99.5 4.5E-13 9.7E-18 143.0 14.3 148 36-186 7-182 (287)
32 cd01898 Obg Obg subfamily. Th 99.5 3.3E-13 7.3E-18 129.6 11.6 125 124-255 2-128 (170)
33 KOG1547 Septin CDC10 and relat 99.5 4.1E-13 8.8E-18 137.8 12.5 128 118-256 42-199 (336)
34 COG1084 Predicted GTPase [Gene 99.5 3.6E-13 7.7E-18 144.0 12.5 128 121-257 167-296 (346)
35 COG1161 Predicted GTPases [Gen 99.5 1.4E-13 3E-18 149.3 9.5 152 32-186 13-193 (322)
36 PF00735 Septin: Septin; Inte 99.5 2.8E-14 6.1E-19 152.1 3.8 126 121-257 3-158 (281)
37 cd01857 HSR1_MMR1 HSR1/MMR1. 99.4 3.1E-13 6.7E-18 128.9 9.4 125 45-182 3-140 (141)
38 PRK15494 era GTPase Era; Provi 99.4 1.1E-12 2.4E-17 143.2 14.9 124 120-254 50-173 (339)
39 PRK12298 obgE GTPase CgtA; Rev 99.4 6.4E-13 1.4E-17 147.7 12.6 124 124-254 161-288 (390)
40 KOG1423 Ras-like GTPase ERA [C 99.4 1.3E-12 2.9E-17 138.2 12.8 131 117-256 67-200 (379)
41 cd01879 FeoB Ferrous iron tran 99.4 1.4E-12 3E-17 123.4 11.6 115 127-255 1-115 (158)
42 TIGR00450 mnmE_trmE_thdF tRNA 99.4 3.4E-12 7.3E-17 144.1 15.9 125 118-255 199-324 (442)
43 cd04104 p47_IIGP_like p47 (47- 99.4 3E-12 6.6E-17 128.8 13.5 120 122-258 1-124 (197)
44 KOG1490 GTP-binding protein CR 99.4 3.7E-13 8.1E-18 149.4 7.0 130 121-258 167-298 (620)
45 PRK00093 GTP-binding protein D 99.4 3.9E-12 8.4E-17 142.4 15.1 121 123-254 2-122 (435)
46 PRK12299 obgE GTPase CgtA; Rev 99.4 2.8E-12 6E-17 140.0 13.5 123 124-255 160-285 (335)
47 TIGR03156 GTP_HflX GTP-binding 99.4 3.3E-12 7.2E-17 140.2 13.6 126 121-255 188-315 (351)
48 cd01897 NOG NOG1 is a nucleola 99.4 5.5E-12 1.2E-16 121.2 13.5 124 124-255 2-127 (168)
49 PRK03003 GTP-binding protein D 99.4 6.5E-12 1.4E-16 142.8 16.1 122 122-254 38-159 (472)
50 cd01881 Obg_like The Obg-like 99.4 1.8E-12 3.9E-17 124.7 9.7 122 127-255 1-134 (176)
51 cd04178 Nucleostemin_like Nucl 99.4 5.1E-12 1.1E-16 125.6 12.3 58 120-180 115-172 (172)
52 PRK05291 trmE tRNA modificatio 99.4 5.7E-12 1.2E-16 142.5 14.1 124 120-256 213-336 (449)
53 PRK00454 engB GTP-binding prot 99.3 1.9E-11 4.1E-16 120.8 15.3 126 120-255 22-149 (196)
54 COG5019 CDC3 Septin family pro 99.3 5.5E-12 1.2E-16 136.7 12.2 128 120-258 21-179 (373)
55 cd01856 YlqF YlqF. Proteins o 99.3 9.1E-12 2E-16 122.6 12.6 142 37-181 3-171 (171)
56 PRK12297 obgE GTPase CgtA; Rev 99.3 9.4E-12 2E-16 139.6 13.5 123 124-253 160-286 (424)
57 KOG2485 Conserved ATP/GTP bind 99.3 5.1E-12 1.1E-16 134.3 10.2 151 35-187 28-213 (335)
58 TIGR02729 Obg_CgtA Obg family 99.3 1.2E-11 2.6E-16 134.7 13.4 125 124-255 159-287 (329)
59 PRK09518 bifunctional cytidyla 99.3 1.7E-11 3.6E-16 146.0 15.7 121 123-254 276-396 (712)
60 PF05049 IIGP: Interferon-indu 99.3 6E-13 1.3E-17 146.3 3.1 223 121-363 34-267 (376)
61 PRK04213 GTP-binding protein; 99.3 2.9E-11 6.3E-16 120.6 14.5 124 121-254 8-143 (201)
62 cd00880 Era_like Era (E. coli 99.3 1.8E-11 4E-16 113.0 12.0 118 127-256 1-119 (163)
63 PRK12296 obgE GTPase CgtA; Rev 99.3 1.9E-11 4.2E-16 139.2 14.3 126 122-254 159-297 (500)
64 KOG2655 Septin family protein 99.3 1.1E-11 2.5E-16 135.1 11.2 129 119-258 18-175 (366)
65 cd01878 HflX HflX subfamily. 99.3 3.6E-11 7.7E-16 120.5 14.0 127 120-255 39-167 (204)
66 cd04171 SelB SelB subfamily. 99.3 5E-11 1.1E-15 113.2 14.1 113 124-254 2-117 (164)
67 PRK11058 GTPase HflX; Provisio 99.3 2.2E-11 4.7E-16 137.0 13.2 122 123-254 198-322 (426)
68 PRK09554 feoB ferrous iron tra 99.3 3.5E-11 7.6E-16 143.8 15.5 122 122-255 3-126 (772)
69 cd01849 YlqF_related_GTPase Yl 99.3 6.8E-12 1.5E-16 121.4 7.2 58 120-180 98-155 (155)
70 COG0370 FeoB Fe2+ transport sy 99.3 3.5E-11 7.7E-16 138.9 14.1 126 122-261 3-128 (653)
71 KOG2423 Nucleolar GTPase [Gene 99.3 5.1E-12 1.1E-16 137.0 6.5 137 46-185 206-367 (572)
72 cd01876 YihA_EngB The YihA (En 99.3 7.7E-11 1.7E-15 111.2 13.7 122 125-256 2-125 (170)
73 cd01861 Rab6 Rab6 subfamily. 99.2 1.7E-10 3.7E-15 109.9 14.2 116 123-254 1-118 (161)
74 KOG2484 GTPase [General functi 99.2 2.8E-11 6.2E-16 131.9 8.8 140 44-186 137-313 (435)
75 cd00881 GTP_translation_factor 99.2 1.6E-10 3.5E-15 112.3 12.8 113 124-255 1-128 (189)
76 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 2.1E-10 4.5E-15 109.8 13.1 111 124-254 2-115 (168)
77 cd00154 Rab Rab family. Rab G 99.2 2E-10 4.4E-15 107.1 12.0 116 123-254 1-118 (159)
78 cd01896 DRG The developmentall 99.2 3E-10 6.5E-15 117.9 14.3 87 124-217 2-88 (233)
79 cd04119 RJL RJL (RabJ-Like) su 99.2 2.6E-10 5.7E-15 108.5 12.8 118 123-255 1-124 (168)
80 TIGR00231 small_GTP small GTP- 99.2 7.6E-10 1.6E-14 102.2 14.9 118 122-255 1-122 (161)
81 cd01884 EF_Tu EF-Tu subfamily. 99.2 5.3E-10 1.2E-14 113.2 15.0 114 122-254 2-131 (195)
82 cd04166 CysN_ATPS CysN_ATPS su 99.2 1.6E-10 3.5E-15 117.3 11.1 113 124-254 1-143 (208)
83 cd04160 Arfrp1 Arfrp1 subfamil 99.2 2.3E-10 5.1E-15 109.8 11.6 115 124-254 1-120 (167)
84 cd04145 M_R_Ras_like M-Ras/R-R 99.2 4.3E-10 9.2E-15 107.3 13.2 118 122-255 2-121 (164)
85 cd01891 TypA_BipA TypA (tyrosi 99.1 1.2E-09 2.6E-14 109.0 16.3 112 124-254 4-130 (194)
86 cd01866 Rab2 Rab2 subfamily. 99.1 6.9E-10 1.5E-14 107.7 13.7 118 121-255 3-123 (168)
87 cd01863 Rab18 Rab18 subfamily. 99.1 5.5E-10 1.2E-14 106.6 12.8 118 123-254 1-119 (161)
88 smart00175 RAB Rab subfamily o 99.1 1E-09 2.2E-14 104.4 14.1 116 123-255 1-119 (164)
89 cd01860 Rab5_related Rab5-rela 99.1 6.8E-10 1.5E-14 106.0 12.9 119 122-255 1-120 (163)
90 cd01855 YqeH YqeH. YqeH is an 99.1 9.6E-11 2.1E-15 116.8 6.9 133 44-180 25-190 (190)
91 cd04142 RRP22 RRP22 subfamily. 99.1 7.2E-10 1.6E-14 112.1 13.3 125 123-254 1-129 (198)
92 cd04138 H_N_K_Ras_like H-Ras/N 99.1 8.9E-10 1.9E-14 104.2 13.1 116 123-255 2-120 (162)
93 cd04154 Arl2 Arl2 subfamily. 99.1 1.3E-09 2.9E-14 106.2 14.4 115 120-254 12-128 (173)
94 cd04140 ARHI_like ARHI subfami 99.1 8.1E-10 1.7E-14 106.8 12.6 118 123-255 2-122 (165)
95 smart00178 SAR Sar1p-like memb 99.1 1.4E-09 3.1E-14 107.9 14.5 114 121-254 16-131 (184)
96 cd01864 Rab19 Rab19 subfamily. 99.1 1.9E-09 4.2E-14 103.8 14.8 118 122-255 3-122 (165)
97 cd01889 SelB_euk SelB subfamil 99.1 7.7E-10 1.7E-14 110.2 12.3 114 123-255 1-134 (192)
98 cd01868 Rab11_like Rab11-like. 99.1 2.2E-09 4.8E-14 103.0 14.6 117 122-255 3-122 (165)
99 cd04123 Rab21 Rab21 subfamily. 99.1 2E-09 4.3E-14 101.8 14.0 115 123-255 1-119 (162)
100 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 2.8E-09 6.1E-14 102.6 15.2 118 122-255 2-121 (166)
101 cd04113 Rab4 Rab4 subfamily. 99.1 1.2E-09 2.6E-14 104.4 12.4 117 123-255 1-119 (161)
102 cd04136 Rap_like Rap-like subf 99.1 1.2E-09 2.6E-14 104.0 12.3 117 123-255 2-120 (163)
103 PF00350 Dynamin_N: Dynamin fa 99.1 3.1E-10 6.7E-15 109.8 8.3 112 125-251 1-168 (168)
104 cd00876 Ras Ras family. The R 99.1 1.2E-09 2.6E-14 103.1 12.1 116 124-255 1-118 (160)
105 PLN03118 Rab family protein; P 99.1 1.3E-09 2.8E-14 110.3 13.1 118 121-255 13-134 (211)
106 cd04101 RabL4 RabL4 (Rab-like4 99.1 3.4E-09 7.3E-14 101.5 15.2 117 123-255 1-121 (164)
107 cd04157 Arl6 Arl6 subfamily. 99.1 1.1E-09 2.5E-14 104.1 11.9 116 124-254 1-117 (162)
108 cd04156 ARLTS1 ARLTS1 subfamil 99.1 2.1E-09 4.6E-14 102.4 13.5 111 124-254 1-114 (160)
109 COG2262 HflX GTPases [General 99.1 6.9E-10 1.5E-14 122.1 11.3 128 121-257 191-320 (411)
110 cd04151 Arl1 Arl1 subfamily. 99.1 2.5E-09 5.3E-14 102.5 13.6 111 124-254 1-113 (158)
111 cd01862 Rab7 Rab7 subfamily. 99.1 2.5E-09 5.5E-14 102.7 13.7 118 123-255 1-123 (172)
112 cd01859 MJ1464 MJ1464. This f 99.1 4.9E-10 1.1E-14 108.0 8.8 128 49-180 8-156 (156)
113 cd01867 Rab8_Rab10_Rab13_like 99.1 2.3E-09 4.9E-14 103.8 13.4 116 122-255 3-122 (167)
114 PF00009 GTP_EFTU: Elongation 99.1 9.5E-10 2.1E-14 109.5 11.0 114 122-254 3-135 (188)
115 CHL00071 tufA elongation facto 99.1 2.1E-09 4.5E-14 120.4 14.9 118 119-255 9-142 (409)
116 cd04175 Rap1 Rap1 subgroup. T 99.0 2.1E-09 4.6E-14 103.2 12.9 118 122-255 1-120 (164)
117 cd01890 LepA LepA subfamily. 99.0 1.9E-09 4.1E-14 104.9 12.6 112 124-254 2-132 (179)
118 TIGR00437 feoB ferrous iron tr 99.0 1.1E-09 2.4E-14 127.9 12.9 113 129-255 1-113 (591)
119 cd04159 Arl10_like Arl10-like 99.0 2.2E-09 4.8E-14 100.3 12.3 111 125-254 2-114 (159)
120 cd00157 Rho Rho (Ras homology) 99.0 1.2E-09 2.6E-14 104.9 10.7 117 123-257 1-120 (171)
121 smart00173 RAS Ras subfamily o 99.0 1.6E-09 3.5E-14 103.7 11.5 117 123-255 1-119 (164)
122 COG0536 Obg Predicted GTPase [ 99.0 3.9E-10 8.4E-15 121.5 7.9 166 83-256 117-290 (369)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.0 2E-09 4.4E-14 102.5 12.1 112 124-255 1-114 (158)
124 cd01886 EF-G Elongation factor 99.0 2.2E-09 4.8E-14 114.0 13.5 112 124-254 1-129 (270)
125 cd04124 RabL2 RabL2 subfamily. 99.0 1.9E-09 4.1E-14 104.0 11.9 114 123-254 1-117 (161)
126 KOG1424 Predicted GTP-binding 99.0 6.5E-10 1.4E-14 124.5 9.8 140 44-186 165-375 (562)
127 cd01865 Rab3 Rab3 subfamily. 99.0 2.6E-09 5.6E-14 103.2 12.8 116 123-255 2-120 (165)
128 PRK12317 elongation factor 1-a 99.0 2.7E-09 6E-14 119.7 14.8 118 120-254 4-152 (425)
129 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 2.6E-09 5.6E-14 105.8 12.9 116 122-254 3-122 (183)
130 cd04118 Rab24 Rab24 subfamily. 99.0 4.1E-09 9E-14 104.4 14.3 116 123-255 1-119 (193)
131 cd04106 Rab23_lke Rab23-like s 99.0 4.9E-09 1.1E-13 99.9 14.3 114 123-255 1-120 (162)
132 cd04149 Arf6 Arf6 subfamily. 99.0 5.6E-09 1.2E-13 102.2 14.8 114 121-254 8-123 (168)
133 cd04155 Arl3 Arl3 subfamily. 99.0 4E-09 8.7E-14 102.0 13.4 116 120-255 12-129 (173)
134 cd00879 Sar1 Sar1 subfamily. 99.0 3.1E-09 6.6E-14 104.9 12.8 114 121-254 18-133 (190)
135 cd04112 Rab26 Rab26 subfamily. 99.0 3.8E-09 8.2E-14 105.2 13.5 117 123-255 1-120 (191)
136 KOG1489 Predicted GTP-binding 99.0 1E-09 2.3E-14 117.1 10.0 124 123-254 197-325 (366)
137 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 6.3E-09 1.4E-13 102.0 14.5 113 122-254 15-129 (174)
138 cd04139 RalA_RalB RalA/RalB su 99.0 4.9E-09 1.1E-13 99.6 12.8 117 123-255 1-119 (164)
139 cd04144 Ras2 Ras2 subfamily. 99.0 3.4E-09 7.3E-14 105.5 11.9 117 124-255 1-120 (190)
140 cd04146 RERG_RasL11_like RERG/ 99.0 2.7E-09 5.8E-14 102.8 10.8 116 124-254 1-119 (165)
141 cd04176 Rap2 Rap2 subgroup. T 99.0 4.7E-09 1E-13 100.6 12.3 116 123-254 2-119 (163)
142 cd04161 Arl2l1_Arl13_like Arl2 99.0 9.5E-09 2.1E-13 100.2 14.4 111 124-254 1-113 (167)
143 cd04114 Rab30 Rab30 subfamily. 99.0 1E-08 2.2E-13 98.6 14.5 118 122-255 7-126 (169)
144 cd04109 Rab28 Rab28 subfamily. 99.0 7.4E-09 1.6E-13 105.4 14.0 117 123-254 1-122 (215)
145 cd04125 RabA_like RabA-like su 99.0 5E-09 1.1E-13 103.7 12.4 116 123-254 1-118 (188)
146 cd04158 ARD1 ARD1 subfamily. 99.0 7.1E-09 1.5E-13 101.0 13.3 111 124-254 1-113 (169)
147 PRK12289 GTPase RsgA; Reviewed 99.0 9.2E-10 2E-14 121.1 7.9 130 50-185 86-239 (352)
148 cd04115 Rab33B_Rab33A Rab33B/R 99.0 1.1E-08 2.5E-13 99.4 14.5 119 122-255 2-123 (170)
149 PF08477 Miro: Miro-like prote 99.0 1.3E-09 2.8E-14 99.4 7.3 115 124-252 1-119 (119)
150 cd04122 Rab14 Rab14 subfamily. 99.0 7.8E-09 1.7E-13 99.8 13.2 116 122-255 2-121 (166)
151 PRK09601 GTP-binding protein Y 98.9 2.9E-09 6.3E-14 117.3 10.8 87 123-216 3-106 (364)
152 PTZ00258 GTP-binding protein; 98.9 6.4E-09 1.4E-13 115.7 13.5 90 120-216 19-125 (390)
153 COG1163 DRG Predicted GTPase [ 98.9 3.1E-09 6.7E-14 113.9 10.5 65 121-186 62-126 (365)
154 cd01900 YchF YchF subfamily. 98.9 2.2E-09 4.8E-14 114.4 9.4 85 125-216 1-102 (274)
155 cd04137 RheB Rheb (Ras Homolog 98.9 8.8E-09 1.9E-13 100.6 12.8 117 123-255 2-120 (180)
156 cd01893 Miro1 Miro1 subfamily. 98.9 8.3E-09 1.8E-13 100.0 12.5 113 123-255 1-117 (166)
157 TIGR02528 EutP ethanolamine ut 98.9 6.8E-09 1.5E-13 97.5 11.5 100 124-254 2-101 (142)
158 smart00053 DYNc Dynamin, GTPas 98.9 1.4E-08 3.1E-13 106.3 15.0 126 123-256 27-207 (240)
159 cd04177 RSR1 RSR1 subgroup. R 98.9 6E-09 1.3E-13 101.0 11.3 118 122-255 1-120 (168)
160 PTZ00133 ADP-ribosylation fact 98.9 1.5E-08 3.2E-13 100.7 14.3 113 122-254 17-131 (182)
161 cd04127 Rab27A Rab27a subfamil 98.9 1.5E-08 3.2E-13 98.8 14.0 118 122-255 4-134 (180)
162 cd04116 Rab9 Rab9 subfamily. 98.9 1.1E-08 2.4E-13 98.8 13.0 120 121-254 4-127 (170)
163 cd00877 Ran Ran (Ras-related n 98.9 5.1E-09 1.1E-13 102.0 10.7 113 123-254 1-117 (166)
164 cd04170 EF-G_bact Elongation f 98.9 9E-09 1.9E-13 108.5 13.4 112 124-254 1-129 (268)
165 PLN03127 Elongation factor Tu; 98.9 8.1E-09 1.8E-13 117.1 13.9 118 118-254 57-190 (447)
166 cd04147 Ras_dva Ras-dva subfam 98.9 7.6E-09 1.7E-13 103.7 12.1 116 124-255 1-118 (198)
167 TIGR02836 spore_IV_A stage IV 98.9 3.8E-09 8.2E-14 117.1 10.7 128 121-254 16-193 (492)
168 cd00882 Ras_like_GTPase Ras-li 98.9 7E-09 1.5E-13 94.1 10.8 115 127-256 1-117 (157)
169 cd04150 Arf1_5_like Arf1-Arf5- 98.9 1.6E-08 3.5E-13 97.9 13.6 112 123-254 1-114 (159)
170 smart00177 ARF ARF-like small 98.9 2.2E-08 4.8E-13 98.5 14.3 114 121-254 12-127 (175)
171 PRK12735 elongation factor Tu; 98.9 1.3E-08 2.7E-13 113.7 14.2 119 117-254 7-141 (396)
172 PRK05506 bifunctional sulfate 98.9 1.1E-08 2.5E-13 120.4 14.4 118 120-255 22-171 (632)
173 cd04132 Rho4_like Rho4-like su 98.9 1.2E-08 2.6E-13 100.4 12.4 115 123-255 1-119 (187)
174 TIGR03597 GTPase_YqeH ribosome 98.9 7.2E-09 1.6E-13 114.4 11.9 134 46-183 55-217 (360)
175 PTZ00369 Ras-like protein; Pro 98.9 1.2E-08 2.7E-13 101.4 12.3 118 121-254 4-123 (189)
176 cd04168 TetM_like Tet(M)-like 98.9 1.3E-08 2.8E-13 106.1 12.9 112 124-254 1-129 (237)
177 cd04110 Rab35 Rab35 subfamily. 98.9 2.6E-08 5.5E-13 100.2 14.5 117 121-255 5-124 (199)
178 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.9 2.2E-08 4.7E-13 98.4 13.6 116 122-254 2-120 (172)
179 cd04107 Rab32_Rab38 Rab38/Rab3 98.9 1.3E-08 2.9E-13 102.1 12.4 117 123-255 1-124 (201)
180 PRK15467 ethanolamine utilizat 98.9 6.9E-09 1.5E-13 101.1 10.0 102 124-254 3-104 (158)
181 PRK13796 GTPase YqeH; Provisio 98.9 4.4E-09 9.5E-14 116.3 9.4 136 44-183 59-223 (365)
182 PRK00007 elongation factor G; 98.9 1.6E-08 3.6E-13 120.3 14.7 114 123-255 11-141 (693)
183 cd04105 SR_beta Signal recogni 98.9 2.3E-08 4.9E-13 101.6 13.5 116 124-255 2-123 (203)
184 TIGR00157 ribosome small subun 98.9 2.4E-09 5.2E-14 112.2 6.7 87 123-213 121-216 (245)
185 cd04148 RGK RGK subfamily. Th 98.9 1.5E-08 3.2E-13 104.1 12.1 117 123-255 1-120 (221)
186 cd04169 RF3 RF3 subfamily. Pe 98.9 3.1E-08 6.7E-13 105.2 14.5 112 124-254 4-136 (267)
187 PRK12736 elongation factor Tu; 98.9 3E-08 6.5E-13 110.6 15.0 118 118-254 8-141 (394)
188 PRK00049 elongation factor Tu; 98.9 2.1E-08 4.5E-13 112.0 13.7 118 118-254 8-141 (396)
189 TIGR00485 EF-Tu translation el 98.9 3.8E-08 8.3E-13 109.7 15.7 119 118-255 8-142 (394)
190 cd01883 EF1_alpha Eukaryotic e 98.9 2.9E-08 6.2E-13 101.8 13.4 115 124-255 1-151 (219)
191 cd04108 Rab36_Rab34 Rab34/Rab3 98.9 2.4E-08 5.1E-13 98.0 12.2 115 124-254 2-119 (170)
192 cd04135 Tc10 TC10 subfamily. 98.8 3E-08 6.4E-13 96.0 12.7 113 123-254 1-117 (174)
193 smart00174 RHO Rho (Ras homolo 98.8 1.1E-08 2.4E-13 99.0 9.7 112 125-255 1-116 (174)
194 PLN03110 Rab GTPase; Provision 98.8 2.5E-08 5.3E-13 102.0 12.6 118 121-254 11-130 (216)
195 PRK12739 elongation factor G; 98.8 2E-08 4.4E-13 119.4 13.8 115 122-255 8-139 (691)
196 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 3.2E-08 6.9E-13 96.4 12.8 111 125-254 2-112 (164)
197 TIGR00484 EF-G translation elo 98.8 2.5E-08 5.3E-13 118.7 14.2 114 123-255 11-141 (689)
198 cd04111 Rab39 Rab39 subfamily. 98.8 3.4E-08 7.4E-13 100.7 13.2 119 122-255 2-123 (211)
199 PLN00223 ADP-ribosylation fact 98.8 6.9E-08 1.5E-12 96.0 15.0 113 122-254 17-131 (181)
200 PLN03071 GTP-binding nuclear p 98.8 3.6E-08 7.7E-13 101.2 12.7 117 120-254 11-130 (219)
201 cd04143 Rhes_like Rhes_like su 98.8 3.5E-08 7.6E-13 103.5 12.9 118 123-255 1-127 (247)
202 TIGR00475 selB selenocysteine- 98.8 3.6E-08 7.8E-13 115.2 14.0 114 123-255 1-117 (581)
203 cd01892 Miro2 Miro2 subfamily. 98.8 8.3E-08 1.8E-12 93.9 14.4 116 121-254 3-121 (169)
204 PRK09866 hypothetical protein; 98.8 4.4E-08 9.6E-13 113.5 14.3 73 170-254 230-302 (741)
205 PLN03126 Elongation factor Tu; 98.8 6E-08 1.3E-12 110.9 15.3 118 119-255 78-211 (478)
206 PLN03108 Rab family protein; P 98.8 4.6E-08 1E-12 99.4 12.9 118 121-255 5-125 (210)
207 PRK05124 cysN sulfate adenylyl 98.8 6.9E-08 1.5E-12 110.3 15.8 117 120-254 25-173 (474)
208 cd01874 Cdc42 Cdc42 subfamily. 98.8 5.5E-08 1.2E-12 96.0 13.0 113 123-254 2-118 (175)
209 cd01888 eIF2_gamma eIF2-gamma 98.8 5.3E-08 1.2E-12 98.6 13.2 115 123-254 1-150 (203)
210 cd04117 Rab15 Rab15 subfamily. 98.8 8.3E-08 1.8E-12 92.8 14.0 116 123-255 1-119 (161)
211 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.1E-08 2.3E-13 109.7 7.6 83 123-208 162-253 (287)
212 PRK12288 GTPase RsgA; Reviewed 98.8 1.7E-08 3.6E-13 111.1 9.1 86 124-212 207-301 (347)
213 cd04130 Wrch_1 Wrch-1 subfamil 98.8 4.8E-08 1E-12 95.3 11.4 114 123-255 1-118 (173)
214 cd04165 GTPBP1_like GTPBP1-lik 98.8 5.3E-08 1.2E-12 100.8 12.3 114 124-254 1-151 (224)
215 PRK05306 infB translation init 98.8 4.9E-08 1.1E-12 117.0 13.7 116 119-254 287-402 (787)
216 cd04167 Snu114p Snu114p subfam 98.8 6.2E-08 1.3E-12 98.6 12.5 114 124-256 2-138 (213)
217 cd01870 RhoA_like RhoA-like su 98.8 4.7E-08 1E-12 94.7 11.0 114 123-255 2-119 (175)
218 TIGR02034 CysN sulfate adenyly 98.8 8.1E-08 1.7E-12 107.7 14.3 115 123-255 1-147 (406)
219 cd01885 EF2 EF2 (for archaea a 98.8 8.4E-08 1.8E-12 99.4 13.2 112 124-254 2-138 (222)
220 TIGR00487 IF-2 translation ini 98.7 8E-08 1.7E-12 112.3 13.8 115 120-254 85-200 (587)
221 cd01871 Rac1_like Rac1-like su 98.7 1.2E-07 2.7E-12 93.4 13.0 113 123-254 2-118 (174)
222 cd04126 Rab20 Rab20 subfamily. 98.7 8E-08 1.7E-12 99.3 12.0 113 123-255 1-114 (220)
223 cd04121 Rab40 Rab40 subfamily. 98.7 3.1E-07 6.8E-12 92.5 15.6 116 121-254 5-123 (189)
224 cd04134 Rho3 Rho3 subfamily. 98.7 7.8E-08 1.7E-12 95.8 11.1 113 124-255 2-118 (189)
225 cd04120 Rab12 Rab12 subfamily. 98.7 1.7E-07 3.7E-12 95.4 13.8 114 123-254 1-118 (202)
226 CHL00189 infB translation init 98.7 9.7E-08 2.1E-12 113.7 13.8 115 120-254 242-360 (742)
227 cd01851 GBP Guanylate-binding 98.7 3E-07 6.5E-12 95.2 15.6 127 123-257 8-150 (224)
228 PRK00098 GTPase RsgA; Reviewed 98.7 4.1E-08 8.9E-13 105.7 9.2 83 123-208 165-256 (298)
229 TIGR00483 EF-1_alpha translati 98.7 3E-07 6.5E-12 103.5 15.9 118 120-254 5-154 (426)
230 PF03193 DUF258: Protein of un 98.7 6E-09 1.3E-13 102.9 1.8 61 123-186 36-103 (161)
231 PRK09602 translation-associate 98.7 8.3E-08 1.8E-12 107.4 11.0 88 123-217 2-113 (396)
232 cd01899 Ygr210 Ygr210 subfamil 98.7 9.4E-08 2E-12 104.1 10.8 87 125-218 1-111 (318)
233 cd04131 Rnd Rnd subfamily. Th 98.7 3.3E-07 7.1E-12 91.1 13.4 113 123-254 2-118 (178)
234 cd01882 BMS1 Bms1. Bms1 is an 98.6 2.9E-07 6.2E-12 95.2 13.1 110 119-255 36-147 (225)
235 TIGR01394 TypA_BipA GTP-bindin 98.6 2.3E-07 5E-12 108.7 13.7 112 124-254 3-129 (594)
236 PRK10512 selenocysteinyl-tRNA- 98.6 2.7E-07 5.8E-12 108.6 14.2 114 123-254 1-117 (614)
237 PLN00023 GTP-binding protein; 98.6 7.4E-07 1.6E-11 97.2 15.7 124 119-255 18-165 (334)
238 COG1162 Predicted GTPases [Gen 98.6 6.3E-08 1.4E-12 103.9 7.3 87 124-213 166-261 (301)
239 TIGR00491 aIF-2 translation in 98.6 2.9E-07 6.3E-12 107.7 13.3 114 122-255 4-135 (590)
240 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 7.4E-07 1.6E-11 89.1 14.3 115 121-254 4-122 (182)
241 cd04128 Spg1 Spg1p. Spg1p (se 98.6 6.9E-07 1.5E-11 89.0 13.9 113 123-254 1-117 (182)
242 PRK10218 GTP-binding protein; 98.6 3.8E-07 8.2E-12 107.0 13.7 113 123-254 6-133 (607)
243 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.6 7.8E-07 1.7E-11 92.8 14.4 116 120-254 11-130 (232)
244 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 7.5E-07 1.6E-11 92.3 14.0 115 123-255 2-119 (222)
245 PTZ00141 elongation factor 1- 98.6 1.2E-06 2.6E-11 99.5 16.7 118 120-254 5-158 (446)
246 TIGR00503 prfC peptide chain r 98.6 5.3E-07 1.1E-11 104.4 13.9 115 121-254 10-145 (527)
247 TIGR01425 SRP54_euk signal rec 98.6 1E-06 2.2E-11 99.3 15.6 122 121-257 99-255 (429)
248 PF10662 PduV-EutP: Ethanolami 98.6 2.7E-07 5.9E-12 89.6 9.5 100 124-254 3-102 (143)
249 cd01875 RhoG RhoG subfamily. 98.6 1.1E-06 2.4E-11 87.9 14.1 114 122-254 3-120 (191)
250 cd04133 Rop_like Rop subfamily 98.6 6.2E-07 1.3E-11 89.3 12.2 114 123-255 2-119 (176)
251 PF00071 Ras: Ras family; Int 98.5 5E-07 1.1E-11 86.3 10.8 115 124-255 1-118 (162)
252 KOG3859 Septins (P-loop GTPase 98.5 2E-07 4.3E-12 98.2 8.5 130 120-256 40-191 (406)
253 TIGR01393 lepA GTP-binding pro 98.5 6.7E-07 1.5E-11 104.9 13.9 112 124-254 5-135 (595)
254 COG1100 GTPase SAR1 and relate 98.5 9.8E-07 2.1E-11 88.9 13.3 120 122-256 5-126 (219)
255 PTZ00416 elongation factor 2; 98.5 5.4E-07 1.2E-11 109.5 13.0 113 123-254 20-157 (836)
256 cd04102 RabL3 RabL3 (Rab-like3 98.5 1E-06 2.2E-11 90.0 13.0 118 123-255 1-143 (202)
257 cd04129 Rho2 Rho2 subfamily. 98.5 7.7E-07 1.7E-11 88.4 11.6 113 123-254 2-118 (187)
258 PRK13351 elongation factor G; 98.5 7.9E-07 1.7E-11 105.9 13.8 114 122-254 8-138 (687)
259 PF00025 Arf: ADP-ribosylation 98.5 6.5E-07 1.4E-11 88.6 11.0 115 120-254 12-128 (175)
260 KOG2486 Predicted GTPase [Gene 98.5 6E-07 1.3E-11 95.0 10.9 125 120-255 134-262 (320)
261 PRK00741 prfC peptide chain re 98.5 1.3E-06 2.9E-11 101.0 14.7 115 121-254 9-144 (526)
262 PTZ00132 GTP-binding nuclear p 98.5 1.4E-06 3E-11 88.5 12.8 119 120-254 7-126 (215)
263 PRK04004 translation initiatio 98.5 1.5E-06 3.2E-11 101.9 14.0 114 121-254 5-136 (586)
264 cd04103 Centaurin_gamma Centau 98.5 9.8E-07 2.1E-11 85.9 10.6 109 123-254 1-112 (158)
265 TIGR03680 eif2g_arch translati 98.5 1.1E-06 2.4E-11 98.5 12.5 118 121-255 3-148 (406)
266 PLN00116 translation elongatio 98.4 1.7E-06 3.7E-11 105.3 13.8 114 122-255 19-164 (843)
267 PRK04000 translation initiatio 98.4 2.3E-06 5.1E-11 96.2 12.8 122 117-255 4-153 (411)
268 COG0012 Predicted GTPase, prob 98.4 1.1E-06 2.4E-11 96.5 9.4 89 122-217 2-108 (372)
269 PRK05433 GTP-binding protein L 98.4 3E-06 6.5E-11 99.6 13.6 113 123-254 8-139 (600)
270 smart00176 RAN Ran (Ras-relate 98.3 3.6E-06 7.8E-11 85.7 11.6 109 128-254 1-112 (200)
271 TIGR00490 aEF-2 translation el 98.3 2.6E-06 5.6E-11 102.1 11.8 115 122-255 19-152 (720)
272 PRK12740 elongation factor G; 98.3 3.5E-06 7.7E-11 100.0 12.5 108 128-254 1-125 (668)
273 PRK07560 elongation factor EF- 98.3 4.1E-06 8.8E-11 100.6 12.8 114 123-255 21-153 (731)
274 TIGR00092 GTP-binding protein 98.3 2.4E-06 5.2E-11 94.6 9.7 88 123-216 3-107 (368)
275 cd01873 RhoBTB RhoBTB subfamil 98.3 9.4E-06 2E-10 82.2 13.1 114 122-255 2-134 (195)
276 PF04670 Gtr1_RagA: Gtr1/RagA 98.2 1.2E-05 2.6E-10 84.1 13.1 124 124-256 1-126 (232)
277 PF09439 SRPRB: Signal recogni 98.2 2E-06 4.3E-11 86.7 6.6 115 123-255 4-126 (181)
278 KOG0395 Ras-related GTPase [Ge 98.2 6.7E-06 1.5E-10 83.8 10.1 118 122-255 3-122 (196)
279 KOG0073 GTP-binding ADP-ribosy 98.2 1.8E-05 3.9E-10 78.2 11.5 114 121-254 15-130 (185)
280 KOG0410 Predicted GTP binding 98.1 6.6E-06 1.4E-10 88.7 9.0 127 121-255 177-308 (410)
281 PF00448 SRP54: SRP54-type pro 98.1 1.2E-06 2.6E-11 89.2 2.7 118 123-255 2-154 (196)
282 PLN00043 elongation factor 1-a 98.1 4E-05 8.6E-10 87.3 15.0 119 120-254 5-158 (447)
283 PRK13768 GTPase; Provisional 98.1 5.2E-06 1.1E-10 87.6 7.1 82 170-257 97-178 (253)
284 KOG1491 Predicted GTP-binding 98.1 9.3E-06 2E-10 88.1 9.0 91 120-217 18-125 (391)
285 KOG0078 GTP-binding protein SE 98.1 4.2E-05 9.1E-10 78.2 12.9 122 118-255 8-131 (207)
286 COG1419 FlhF Flagellar GTP-bin 98.0 1.3E-05 2.8E-10 89.3 8.1 119 122-255 203-352 (407)
287 PRK14974 cell division protein 98.0 1.3E-05 2.9E-10 88.0 7.9 121 121-256 139-294 (336)
288 TIGR03348 VI_IcmF type VI secr 98.0 3.4E-05 7.3E-10 97.2 12.4 125 124-255 113-257 (1169)
289 KOG0084 GTPase Rab1/YPT1, smal 98.0 5.1E-05 1.1E-09 77.0 11.2 117 120-255 7-128 (205)
290 PRK11889 flhF flagellar biosyn 98.0 8.8E-06 1.9E-10 90.8 6.2 120 122-256 241-392 (436)
291 PRK01889 GTPase RsgA; Reviewed 98.0 6.2E-06 1.3E-10 91.2 4.9 61 122-185 195-262 (356)
292 PRK09435 membrane ATPase/prote 98.0 4.6E-05 9.9E-10 83.7 11.1 24 120-143 54-77 (332)
293 KOG1954 Endocytosis/signaling 98.0 2.8E-05 6.2E-10 85.0 9.3 129 121-256 57-226 (532)
294 KOG1486 GTP-binding protein DR 98.0 1.2E-05 2.6E-10 84.1 6.2 108 121-238 61-168 (364)
295 COG4917 EutP Ethanolamine util 97.9 1.2E-05 2.5E-10 76.5 5.1 102 124-255 3-104 (148)
296 KOG1707 Predicted Ras related/ 97.9 3.7E-05 8.1E-10 88.2 10.0 123 119-256 6-130 (625)
297 COG5256 TEF1 Translation elong 97.9 8.7E-05 1.9E-09 82.6 12.0 119 120-255 5-159 (428)
298 KOG0448 Mitofusin 1 GTPase, in 97.9 5.5E-05 1.2E-09 88.1 10.9 119 121-256 108-276 (749)
299 PRK14722 flhF flagellar biosyn 97.9 2.9E-05 6.4E-10 86.4 7.6 25 120-144 135-159 (374)
300 TIGR00064 ftsY signal recognit 97.9 4.7E-05 1E-09 81.4 8.8 121 121-256 71-232 (272)
301 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.8 0.00016 3.5E-09 73.4 11.5 120 122-257 22-144 (221)
302 PRK14723 flhF flagellar biosyn 97.8 4.4E-05 9.6E-10 91.4 8.5 122 122-256 185-338 (767)
303 COG2229 Predicted GTPase [Gene 97.8 0.00023 5.1E-09 71.6 12.2 118 121-256 9-136 (187)
304 PTZ00327 eukaryotic translatio 97.8 0.00016 3.5E-09 82.7 12.5 119 120-255 32-185 (460)
305 PRK14721 flhF flagellar biosyn 97.8 6.5E-05 1.4E-09 84.8 9.0 121 121-256 190-341 (420)
306 KOG0394 Ras-related GTPase [Ge 97.8 8.4E-05 1.8E-09 74.8 8.6 113 120-254 7-131 (210)
307 PRK12726 flagellar biosynthesi 97.8 3.3E-05 7.2E-10 86.0 6.2 121 121-256 205-357 (407)
308 PRK12727 flagellar biosynthesi 97.8 7.5E-05 1.6E-09 86.2 9.0 28 117-144 345-372 (559)
309 KOG1145 Mitochondrial translat 97.8 0.00022 4.7E-09 81.6 12.4 118 117-254 148-266 (683)
310 KOG0087 GTPase Rab11/YPT3, sma 97.8 0.00011 2.4E-09 75.3 9.1 121 118-255 10-133 (222)
311 PRK10416 signal recognition pa 97.7 7.4E-05 1.6E-09 81.6 8.3 120 121-255 113-273 (318)
312 KOG0092 GTPase Rab5/YPT51 and 97.7 0.00016 3.4E-09 73.2 9.6 117 121-256 4-125 (200)
313 KOG3883 Ras family small GTPas 97.7 0.00032 7E-09 68.8 10.4 125 120-257 7-134 (198)
314 COG0532 InfB Translation initi 97.7 0.0004 8.6E-09 79.5 12.7 114 121-254 4-120 (509)
315 PRK00771 signal recognition pa 97.6 0.00014 3E-09 82.7 8.1 122 120-256 93-247 (437)
316 COG0480 FusA Translation elong 97.6 0.00059 1.3E-08 81.6 13.2 115 121-255 9-142 (697)
317 cd03112 CobW_like The function 97.6 0.00029 6.3E-09 69.1 9.0 21 125-145 3-23 (158)
318 TIGR00750 lao LAO/AO transport 97.6 0.00043 9.4E-09 74.8 11.1 25 120-144 32-56 (300)
319 KOG0080 GTPase Rab18, small G 97.6 0.00034 7.3E-09 69.2 9.1 116 121-254 10-130 (209)
320 KOG0098 GTPase Rab2, small G p 97.5 0.00084 1.8E-08 67.9 11.6 117 122-257 6-127 (216)
321 PRK10867 signal recognition pa 97.5 0.00017 3.8E-09 81.8 7.7 120 121-255 99-254 (433)
322 COG3523 IcmF Type VI protein s 97.5 0.0003 6.5E-09 87.5 10.1 126 124-255 127-270 (1188)
323 KOG1532 GTPase XAB1, interacts 97.5 0.00019 4.1E-09 76.3 7.1 98 170-283 116-215 (366)
324 PRK06731 flhF flagellar biosyn 97.5 0.00021 4.7E-09 76.4 7.2 119 122-255 75-225 (270)
325 KOG0079 GTP-binding protein H- 97.5 0.00044 9.4E-09 67.6 8.2 113 123-254 9-125 (198)
326 PF03029 ATP_bind_1: Conserved 97.4 0.00017 3.7E-09 75.7 5.7 77 171-255 92-170 (238)
327 PRK12723 flagellar biosynthesi 97.4 0.00018 4E-09 80.6 6.2 121 121-256 173-327 (388)
328 KOG0447 Dynamin-like GTP bindi 97.4 0.001 2.2E-08 75.9 11.8 127 123-255 309-493 (980)
329 PRK05703 flhF flagellar biosyn 97.4 0.00014 3.1E-09 82.4 5.2 119 122-255 221-371 (424)
330 COG0541 Ffh Signal recognition 97.4 0.00031 6.6E-09 78.9 7.6 193 35-256 22-254 (451)
331 TIGR00959 ffh signal recogniti 97.4 0.00034 7.4E-09 79.4 8.1 120 121-255 98-253 (428)
332 KOG0095 GTPase Rab30, small G 97.4 0.0016 3.6E-08 63.6 11.4 120 119-256 4-127 (213)
333 PRK12724 flagellar biosynthesi 97.3 0.00055 1.2E-08 77.4 8.6 120 122-256 223-374 (432)
334 cd03115 SRP The signal recogni 97.3 0.0029 6.2E-08 62.2 12.3 73 169-256 82-154 (173)
335 KOG0458 Elongation factor 1 al 97.3 0.0021 4.4E-08 74.3 12.4 118 121-255 176-329 (603)
336 PRK06995 flhF flagellar biosyn 97.3 0.0003 6.4E-09 80.9 5.4 23 122-144 256-278 (484)
337 KOG0075 GTP-binding ADP-ribosy 97.2 0.00078 1.7E-08 65.8 7.1 114 122-254 20-135 (186)
338 KOG0090 Signal recognition par 97.2 0.0023 5E-08 66.1 10.3 115 123-256 39-160 (238)
339 KOG0781 Signal recognition par 97.1 0.00074 1.6E-08 76.3 6.6 126 119-254 375-543 (587)
340 COG1217 TypA Predicted membran 97.1 0.0023 5E-08 72.4 10.2 111 124-254 7-133 (603)
341 PF03308 ArgK: ArgK protein; 97.0 0.00027 5.8E-09 75.0 1.4 23 121-143 28-50 (266)
342 PRK14845 translation initiatio 97.0 0.006 1.3E-07 75.9 13.0 102 134-255 473-592 (1049)
343 KOG1487 GTP-binding protein DR 96.9 0.00081 1.7E-08 71.1 3.8 120 124-253 61-181 (358)
344 COG1703 ArgK Putative periplas 96.9 0.0039 8.4E-08 67.4 9.0 26 118-143 47-72 (323)
345 KOG0461 Selenocysteine-specifi 96.9 0.014 3.1E-07 64.0 13.2 115 121-256 6-137 (522)
346 KOG0093 GTPase Rab3, small G p 96.8 0.0063 1.4E-07 59.6 9.3 115 122-254 21-139 (193)
347 COG5192 BMS1 GTP-binding prote 96.8 0.0099 2.1E-07 68.4 11.8 113 117-255 64-177 (1077)
348 COG0552 FtsY Signal recognitio 96.8 0.0023 5E-08 70.0 6.5 123 119-256 136-299 (340)
349 PF00004 AAA: ATPase family as 96.8 0.0062 1.3E-07 55.9 8.3 103 125-252 1-111 (132)
350 cd03114 ArgK-like The function 96.7 0.0051 1.1E-07 60.0 8.0 20 125-144 2-21 (148)
351 KOG0462 Elongation factor-type 96.7 0.0069 1.5E-07 69.8 9.8 114 123-255 61-191 (650)
352 KOG0780 Signal recognition par 96.5 0.008 1.7E-07 66.9 8.3 126 117-257 96-256 (483)
353 COG3276 SelB Selenocysteine-sp 96.4 0.022 4.7E-07 64.4 11.1 114 124-256 2-118 (447)
354 KOG0074 GTP-binding ADP-ribosy 96.3 0.012 2.6E-07 57.4 7.2 116 120-255 15-133 (185)
355 KOG0077 Vesicle coat complex C 96.3 0.0087 1.9E-07 59.8 6.4 113 122-255 20-135 (193)
356 KOG0070 GTP-binding ADP-ribosy 96.2 0.013 2.8E-07 59.2 7.1 113 121-254 16-131 (181)
357 KOG0086 GTPase Rab4, small G p 96.1 0.039 8.4E-07 54.5 9.7 116 121-255 8-128 (214)
358 KOG3886 GTP-binding protein [S 96.1 0.012 2.5E-07 61.8 6.3 126 123-257 5-132 (295)
359 TIGR03263 guanyl_kin guanylate 96.0 0.0036 7.7E-08 61.7 2.3 55 124-180 3-57 (180)
360 KOG0091 GTPase Rab39, small G 95.9 0.025 5.5E-07 56.4 7.6 119 121-255 7-130 (213)
361 KOG0468 U5 snRNP-specific prot 95.8 0.058 1.3E-06 63.5 10.9 114 122-255 128-263 (971)
362 KOG0393 Ras-related small GTPa 95.8 0.013 2.9E-07 60.0 5.2 116 121-254 3-122 (198)
363 KOG0071 GTP-binding ADP-ribosy 95.7 0.14 3E-06 50.2 11.4 114 122-255 17-132 (180)
364 TIGR03499 FlhF flagellar biosy 95.6 0.0087 1.9E-07 64.3 3.4 24 121-144 193-216 (282)
365 COG0050 TufB GTPases - transla 95.6 0.15 3.2E-06 55.4 12.3 118 119-255 9-142 (394)
366 COG0194 Gmk Guanylate kinase [ 95.6 0.0059 1.3E-07 62.0 1.8 53 122-177 4-56 (191)
367 COG2895 CysN GTPases - Sulfate 95.6 0.087 1.9E-06 58.4 10.7 118 120-255 4-153 (431)
368 KOG1144 Translation initiation 95.5 0.084 1.8E-06 62.8 11.1 113 121-254 474-605 (1064)
369 PRK14737 gmk guanylate kinase; 95.5 0.012 2.7E-07 59.4 3.9 54 122-177 4-57 (186)
370 cd00071 GMPK Guanosine monopho 95.4 0.012 2.7E-07 56.4 3.4 54 125-180 2-56 (137)
371 KOG0088 GTPase Rab21, small G 95.4 0.013 2.7E-07 58.2 3.4 117 119-254 10-131 (218)
372 COG0481 LepA Membrane GTPase L 95.4 0.14 3.1E-06 58.6 11.9 114 124-256 11-143 (603)
373 COG4108 PrfC Peptide chain rel 95.3 0.075 1.6E-06 60.2 9.4 113 123-254 13-146 (528)
374 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.12 2.6E-06 49.9 9.8 23 124-146 28-50 (144)
375 KOG2749 mRNA cleavage and poly 95.3 0.15 3.2E-06 56.6 11.4 62 173-254 215-276 (415)
376 PRK14738 gmk guanylate kinase; 95.3 0.017 3.7E-07 59.0 4.1 55 120-177 11-66 (206)
377 KOG0076 GTP-binding ADP-ribosy 95.3 0.036 7.9E-07 55.8 6.1 119 122-254 17-139 (197)
378 PRK08472 fliI flagellum-specif 95.3 0.017 3.6E-07 66.0 4.2 92 122-220 157-259 (434)
379 KOG0446 Vacuolar sorting prote 95.2 0.013 2.8E-07 70.0 3.2 127 123-256 30-214 (657)
380 PF00005 ABC_tran: ABC transpo 95.2 0.016 3.5E-07 54.2 3.3 24 124-147 13-36 (137)
381 PRK00300 gmk guanylate kinase; 95.2 0.015 3.2E-07 58.6 3.2 25 122-146 5-29 (205)
382 KOG4252 GTP-binding protein [S 95.2 0.0096 2.1E-07 60.1 1.7 119 120-256 18-139 (246)
383 KOG0467 Translation elongation 95.1 0.077 1.7E-06 63.4 9.2 112 123-254 10-137 (887)
384 PF02263 GBP: Guanylate-bindin 95.1 0.04 8.6E-07 58.6 6.3 61 123-183 22-87 (260)
385 cd01983 Fer4_NifH The Fer4_Nif 95.1 0.15 3.2E-06 43.7 8.7 46 125-183 2-47 (99)
386 PF05673 DUF815: Protein of un 95.0 0.077 1.7E-06 56.3 7.8 96 122-249 52-147 (249)
387 COG5257 GCD11 Translation init 95.0 0.047 1E-06 59.7 6.3 120 120-256 8-155 (415)
388 COG5258 GTPBP1 GTPase [General 94.9 0.055 1.2E-06 60.4 6.8 118 117-256 112-270 (527)
389 COG1116 TauB ABC-type nitrate/ 94.9 0.019 4.1E-07 60.8 3.1 25 124-148 31-55 (248)
390 PF13207 AAA_17: AAA domain; P 94.9 0.023 4.9E-07 52.1 3.3 22 124-145 1-22 (121)
391 PF02492 cobW: CobW/HypB/UreG, 94.8 0.052 1.1E-06 54.2 5.9 116 125-255 3-155 (178)
392 cd00009 AAA The AAA+ (ATPases 94.8 0.11 2.4E-06 47.2 7.7 24 123-146 20-43 (151)
393 KOG1533 Predicted GTPase [Gene 94.8 0.034 7.3E-07 58.6 4.5 26 125-150 5-36 (290)
394 COG3840 ThiQ ABC-type thiamine 94.7 0.022 4.8E-07 58.1 3.0 24 124-147 27-50 (231)
395 PTZ00099 rab6; Provisional 94.7 0.16 3.4E-06 50.7 9.1 69 170-254 29-98 (176)
396 cd03230 ABC_DR_subfamily_A Thi 94.7 0.2 4.2E-06 49.5 9.5 24 124-147 28-51 (173)
397 COG1341 Predicted GTPase or GT 94.6 0.11 2.3E-06 58.6 8.1 26 119-144 70-95 (398)
398 cd03110 Fer4_NifH_child This p 94.5 0.2 4.4E-06 49.4 9.2 65 168-253 91-155 (179)
399 KOG0464 Elongation factor G [T 94.5 0.025 5.4E-07 63.2 2.9 113 124-255 39-168 (753)
400 COG1136 SalX ABC-type antimicr 94.4 0.028 6.1E-07 58.9 3.0 25 124-148 33-57 (226)
401 PRK11537 putative GTP-binding 94.4 0.15 3.3E-06 56.0 8.8 21 125-145 7-27 (318)
402 COG1618 Predicted nucleotide k 94.3 0.37 8.1E-06 48.4 10.2 118 121-252 4-141 (179)
403 PF13555 AAA_29: P-loop contai 94.2 0.04 8.6E-07 46.6 2.9 20 124-143 25-44 (62)
404 cd01130 VirB11-like_ATPase Typ 94.2 0.036 7.8E-07 55.6 3.1 24 123-146 26-49 (186)
405 KOG4181 Uncharacterized conser 94.1 0.74 1.6E-05 51.1 13.0 24 122-145 188-211 (491)
406 PF09547 Spore_IV_A: Stage IV 94.1 0.17 3.6E-06 57.6 8.3 23 121-143 16-38 (492)
407 PF13671 AAA_33: AAA domain; P 94.1 0.04 8.6E-07 51.8 3.0 21 125-145 2-22 (143)
408 cd03261 ABC_Org_Solvent_Resist 94.0 0.042 9E-07 56.8 3.3 23 124-146 28-50 (235)
409 cd03225 ABC_cobalt_CbiO_domain 94.0 0.045 9.7E-07 55.5 3.5 24 124-147 29-52 (211)
410 smart00382 AAA ATPases associa 93.9 0.049 1.1E-06 48.8 3.2 23 123-145 3-25 (148)
411 cd03243 ABC_MutS_homologs The 93.8 0.33 7.1E-06 49.3 9.3 22 123-144 30-51 (202)
412 TIGR02673 FtsE cell division A 93.8 0.049 1.1E-06 55.3 3.3 23 124-146 30-52 (214)
413 PRK13695 putative NTPase; Prov 93.8 0.32 6.8E-06 48.1 8.9 22 124-145 2-23 (174)
414 cd03222 ABC_RNaseL_inhibitor T 93.8 0.047 1E-06 55.0 3.1 24 123-146 26-49 (177)
415 cd03265 ABC_DrrA DrrA is the A 93.8 0.05 1.1E-06 55.6 3.3 23 124-146 28-50 (220)
416 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.8 0.049 1.1E-06 55.4 3.3 24 124-147 32-55 (218)
417 TIGR00960 3a0501s02 Type II (G 93.8 0.05 1.1E-06 55.4 3.3 23 124-146 31-53 (216)
418 TIGR03608 L_ocin_972_ABC putat 93.7 0.052 1.1E-06 54.7 3.3 23 124-146 26-48 (206)
419 cd03264 ABC_drug_resistance_li 93.7 0.047 1E-06 55.4 3.0 23 124-146 27-49 (211)
420 TIGR01166 cbiO cobalt transpor 93.7 0.054 1.2E-06 54.1 3.3 23 124-146 20-42 (190)
421 cd03281 ABC_MSH5_euk MutS5 hom 93.6 0.36 7.8E-06 49.8 9.3 21 123-143 30-50 (213)
422 cd03260 ABC_PstB_phosphate_tra 93.6 0.052 1.1E-06 55.7 3.2 23 124-146 28-50 (227)
423 cd03293 ABC_NrtD_SsuB_transpor 93.6 0.055 1.2E-06 55.3 3.3 24 124-147 32-55 (220)
424 PRK07261 topology modulation p 93.6 0.053 1.1E-06 53.9 3.1 22 124-145 2-23 (171)
425 cd03224 ABC_TM1139_LivF_branch 93.6 0.054 1.2E-06 55.2 3.3 23 124-146 28-50 (222)
426 cd03238 ABC_UvrA The excision 93.6 0.054 1.2E-06 54.5 3.1 22 123-144 22-43 (176)
427 cd02038 FleN-like FleN is a me 93.6 0.51 1.1E-05 45.1 9.7 98 126-252 4-108 (139)
428 cd03226 ABC_cobalt_CbiO_domain 93.6 0.056 1.2E-06 54.6 3.3 23 124-146 28-50 (205)
429 KOG1534 Putative transcription 93.6 0.068 1.5E-06 55.6 3.8 77 170-255 98-178 (273)
430 cd03292 ABC_FtsE_transporter F 93.6 0.058 1.3E-06 54.7 3.3 23 124-146 29-51 (214)
431 cd03263 ABC_subfamily_A The AB 93.6 0.058 1.2E-06 55.0 3.3 23 124-146 30-52 (220)
432 cd03259 ABC_Carb_Solutes_like 93.5 0.058 1.3E-06 54.8 3.3 23 124-146 28-50 (213)
433 KOG0066 eIF2-interacting prote 93.5 0.39 8.4E-06 54.7 9.8 23 124-146 615-637 (807)
434 PRK10078 ribose 1,5-bisphospho 93.5 0.059 1.3E-06 53.9 3.2 23 124-146 4-26 (186)
435 TIGR02211 LolD_lipo_ex lipopro 93.5 0.062 1.3E-06 54.8 3.4 24 124-147 33-56 (221)
436 TIGR02315 ABC_phnC phosphonate 93.5 0.059 1.3E-06 55.8 3.3 23 124-146 30-52 (243)
437 cd03262 ABC_HisP_GlnQ_permease 93.4 0.062 1.3E-06 54.4 3.3 23 124-146 28-50 (213)
438 cd03269 ABC_putative_ATPase Th 93.4 0.063 1.4E-06 54.4 3.3 23 124-146 28-50 (210)
439 cd03216 ABC_Carb_Monos_I This 93.4 0.066 1.4E-06 52.6 3.3 23 124-146 28-50 (163)
440 PF13238 AAA_18: AAA domain; P 93.4 0.061 1.3E-06 49.1 2.9 21 125-145 1-21 (129)
441 cd03258 ABC_MetN_methionine_tr 93.4 0.067 1.4E-06 55.1 3.5 24 124-147 33-56 (233)
442 TIGR02322 phosphon_PhnN phosph 93.4 0.055 1.2E-06 53.3 2.7 22 124-145 3-24 (179)
443 cd03287 ABC_MSH3_euk MutS3 hom 93.4 0.46 9.9E-06 49.6 9.6 21 124-144 33-53 (222)
444 cd03218 ABC_YhbG The ABC trans 93.3 0.065 1.4E-06 55.1 3.3 23 124-146 28-50 (232)
445 cd03257 ABC_NikE_OppD_transpor 93.3 0.07 1.5E-06 54.5 3.4 23 124-146 33-55 (228)
446 cd03256 ABC_PhnC_transporter A 93.3 0.067 1.5E-06 55.2 3.3 23 124-146 29-51 (241)
447 cd01131 PilT Pilus retraction 93.2 0.058 1.3E-06 54.8 2.7 22 124-145 3-24 (198)
448 TIGR01978 sufC FeS assembly AT 93.2 0.068 1.5E-06 55.3 3.3 22 124-145 28-49 (243)
449 cd03235 ABC_Metallic_Cations A 93.2 0.07 1.5E-06 54.2 3.3 24 124-147 27-50 (213)
450 cd03266 ABC_NatA_sodium_export 93.2 0.07 1.5E-06 54.3 3.3 23 124-146 33-55 (218)
451 TIGR01189 ccmA heme ABC export 93.2 0.072 1.6E-06 53.6 3.3 23 124-146 28-50 (198)
452 PRK11629 lolD lipoprotein tran 93.2 0.07 1.5E-06 55.1 3.3 23 124-146 37-59 (233)
453 PRK14242 phosphate transporter 93.2 0.067 1.4E-06 55.9 3.2 22 124-145 34-55 (253)
454 PRK08118 topology modulation p 93.2 0.068 1.5E-06 53.1 3.1 22 124-145 3-24 (167)
455 PRK15177 Vi polysaccharide exp 93.2 0.079 1.7E-06 54.4 3.7 23 124-146 15-37 (213)
456 cd03254 ABCC_Glucan_exporter_l 93.2 0.072 1.6E-06 54.6 3.4 24 124-147 31-54 (229)
457 cd03301 ABC_MalK_N The N-termi 93.2 0.073 1.6E-06 54.0 3.3 24 124-147 28-51 (213)
458 TIGR02533 type_II_gspE general 93.2 0.23 4.9E-06 57.7 7.7 22 124-145 244-265 (486)
459 KOG0097 GTPase Rab14, small G 93.2 0.57 1.2E-05 45.8 9.1 115 122-255 11-130 (215)
460 cd03268 ABC_BcrA_bacitracin_re 93.1 0.073 1.6E-06 53.8 3.3 23 124-146 28-50 (208)
461 cd03229 ABC_Class3 This class 93.1 0.078 1.7E-06 52.6 3.4 24 124-147 28-51 (178)
462 PRK13539 cytochrome c biogenes 93.1 0.078 1.7E-06 53.9 3.5 24 124-147 30-53 (207)
463 cd03219 ABC_Mj1267_LivG_branch 93.1 0.071 1.5E-06 55.0 3.2 23 124-146 28-50 (236)
464 PRK13541 cytochrome c biogenes 93.1 0.078 1.7E-06 53.3 3.4 24 124-147 28-51 (195)
465 TIGR00235 udk uridine kinase. 93.1 0.077 1.7E-06 54.0 3.4 25 121-145 5-29 (207)
466 cd03215 ABC_Carb_Monos_II This 93.1 0.08 1.7E-06 52.7 3.4 24 124-147 28-51 (182)
467 PRK11124 artP arginine transpo 93.1 0.076 1.6E-06 55.1 3.4 24 124-147 30-53 (242)
468 cd03231 ABC_CcmA_heme_exporter 93.1 0.077 1.7E-06 53.7 3.3 23 124-146 28-50 (201)
469 PRK11264 putative amino-acid A 93.1 0.075 1.6E-06 55.3 3.3 23 124-146 31-53 (250)
470 PRK11248 tauB taurine transpor 93.0 0.078 1.7E-06 55.9 3.4 24 124-147 29-52 (255)
471 smart00072 GuKc Guanylate kina 93.0 0.065 1.4E-06 53.6 2.7 51 124-176 4-55 (184)
472 PRK10908 cell division protein 93.0 0.078 1.7E-06 54.3 3.3 23 124-146 30-52 (222)
473 TIGR02770 nickel_nikD nickel i 93.0 0.076 1.6E-06 54.8 3.2 24 124-147 14-37 (230)
474 PRK14269 phosphate ABC transpo 93.0 0.076 1.6E-06 55.4 3.2 22 124-145 30-51 (246)
475 PRK14247 phosphate ABC transpo 93.0 0.076 1.6E-06 55.4 3.2 23 124-146 31-53 (250)
476 PRK05480 uridine/cytidine kina 93.0 0.08 1.7E-06 53.8 3.3 26 120-145 4-29 (209)
477 PRK10584 putative ABC transpor 93.0 0.079 1.7E-06 54.4 3.3 23 124-146 38-60 (228)
478 cd03296 ABC_CysA_sulfate_impor 93.0 0.078 1.7E-06 55.0 3.3 24 124-147 30-53 (239)
479 PRK13540 cytochrome c biogenes 93.0 0.084 1.8E-06 53.3 3.4 23 124-146 29-51 (200)
480 PRK13543 cytochrome c biogenes 93.0 0.082 1.8E-06 54.0 3.4 24 124-147 39-62 (214)
481 cd03111 CpaE_like This protein 93.0 0.65 1.4E-05 42.5 8.9 94 127-250 5-106 (106)
482 TIGR03864 PQQ_ABC_ATP ABC tran 93.0 0.081 1.8E-06 54.8 3.3 24 124-147 29-52 (236)
483 COG0410 LivF ABC-type branched 93.0 0.077 1.7E-06 55.7 3.1 26 124-149 31-56 (237)
484 COG3839 MalK ABC-type sugar tr 92.9 0.074 1.6E-06 58.9 3.2 23 125-147 32-54 (338)
485 PRK14241 phosphate transporter 92.9 0.078 1.7E-06 55.7 3.2 23 124-146 32-54 (258)
486 PF13521 AAA_28: AAA domain; P 92.9 0.063 1.4E-06 52.3 2.4 22 124-145 1-22 (163)
487 cd03297 ABC_ModC_molybdenum_tr 92.9 0.081 1.8E-06 53.8 3.3 24 124-147 25-48 (214)
488 PRK14239 phosphate transporter 92.9 0.081 1.7E-06 55.2 3.3 22 124-145 33-54 (252)
489 PRK14262 phosphate ABC transpo 92.9 0.081 1.7E-06 55.2 3.2 23 124-146 31-53 (250)
490 PRK13851 type IV secretion sys 92.9 0.079 1.7E-06 58.8 3.3 24 122-145 162-185 (344)
491 cd03214 ABC_Iron-Siderophores_ 92.9 0.091 2E-06 52.2 3.4 23 124-146 27-49 (180)
492 cd03245 ABCC_bacteriocin_expor 92.9 0.089 1.9E-06 53.6 3.5 24 124-147 32-55 (220)
493 PRK10895 lipopolysaccharide AB 92.8 0.088 1.9E-06 54.6 3.4 23 124-146 31-53 (241)
494 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.8 0.083 1.8E-06 54.6 3.2 23 124-146 31-53 (238)
495 TIGR02323 CP_lyasePhnK phospho 92.8 0.088 1.9E-06 55.0 3.4 24 124-147 31-54 (253)
496 cd03369 ABCC_NFT1 Domain 2 of 92.8 0.089 1.9E-06 53.3 3.3 23 124-146 36-58 (207)
497 PRK15056 manganese/iron transp 92.8 0.084 1.8E-06 56.1 3.3 23 124-146 35-57 (272)
498 COG0563 Adk Adenylate kinase a 92.8 0.086 1.9E-06 53.2 3.1 22 124-145 2-23 (178)
499 cd03236 ABC_RNaseL_inhibitor_d 92.8 0.092 2E-06 55.7 3.5 26 123-148 27-52 (255)
500 PRK14273 phosphate ABC transpo 92.7 0.087 1.9E-06 55.1 3.3 23 124-146 35-57 (254)
No 1
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=3.2e-218 Score=1818.05 Aligned_cols=712 Identities=43% Similarity=0.708 Sum_probs=659.1
Q ss_pred cccccccccCCCCCCCCCCCchHhhhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhccccccccccchhHHHHhh
Q 004520 20 RRYSTSQQVPVEDPSPHNQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNL 99 (747)
Q Consensus 20 r~~~~~~~~~~~~~~~~~~~~~~eek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~lad~~~~~~~~~~~~~l 99 (747)
|-.++..+......+.++.+++++++++.+||+.++|+|++|..|+|++|+|.+++|||||+++++..... ..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l~~~~~~~------~~~ 95 (763)
T TIGR00993 22 RVNGFGSSNQFQQAEDSTTTLSEEHKEKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGLLAGRQGG------GAF 95 (763)
T ss_pred CcccCCCcccccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHhhccCcc------ccc
Confidence 33333333333444455689999999999999999999999999999999999999999999998754332 224
Q ss_pred cchhHHHHHhhcccCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCC
Q 004520 100 RSDRTRAIAREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPG 179 (747)
Q Consensus 100 g~~~~~~iA~~~~~~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPG 179 (747)
+++.+..+|.+.++.+.+++.+.++|+|+|+||||||||||+|+|+..+.++...+.|+.+..+...++|..+.||||||
T Consensus 96 s~d~a~~~a~~~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPG 175 (763)
T TIGR00993 96 SLDAAKAMAEQLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPG 175 (763)
T ss_pred cchhhHHHHhhhhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCC
Confidence 57999999999999999999999999999999999999999999999998887777788887777788999999999999
Q ss_pred CCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCC
Q 004520 180 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGS 259 (747)
Q Consensus 180 l~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~ 259 (747)
+.+..... ..+.++++.+.+++..+++|+||||++++..+.+..+..+++.|++.||.++|+++||||||+|.++|+++
T Consensus 176 L~dt~~dq-~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ 254 (763)
T TIGR00993 176 LKSSASDQ-SKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGP 254 (763)
T ss_pred CCccccch-HHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCC
Confidence 99875432 45678888898898888899999999998776555688999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhChHHHHHHHHHHhcccCCcc-----hhhhhhcCCcccccccCcccCCCccchHHHHHhhhhhhhhhh
Q 004520 260 SGYPFSYESYVTQCTDLVQQRIHQAVSDARLEN-----QVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLG 334 (747)
Q Consensus 260 ~g~~~s~e~~i~q~~~~Lqe~I~q~~~d~~l~~-----pv~lVEn~p~c~~N~~ge~vLP~~~~W~~~L~~~C~s~ki~~ 334 (747)
++.+.+|++|+.++.+.+|+.|++|.++++++| |+.+|||+|.|.+|..||++||+++.|+++|+++|++.|++.
T Consensus 255 ng~~~tye~fv~~rs~~Lq~~Irq~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~ 334 (763)
T TIGR00993 255 NGTPLSYDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILS 334 (763)
T ss_pred CCCCcCHHHHHhhChHHHHHHHHHhcCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999888 999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccccccc-CCCCC-CCCCChhHHHHHhhhccCCCCCcc--------cchhhhhhhccc-CCcccccCCCCCCc
Q 004520 335 DANALLGFRDSIEL-GPLGN-TRVPSMPHLLSSFLRHRSLSSPSE--------AENEIDEILASE-IDEEDEYDQLPPIK 403 (747)
Q Consensus 335 ea~~~lk~~~~~~~-~~~~~-~~~~plp~l~~~ll~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~yd~lp~~~ 403 (747)
+|+++++.|+.+.. .||+. .|+|||||||||||++|+|+|+++ +|.|+||++|+| ||+|||||||||||
T Consensus 335 ~a~~l~~~q~~~~~~~~~~~~~~~~plp~~ls~ll~~r~~~k~~~~~~~~~~d~d~~~~~~~d~~~ed~e~eydqlppf~ 414 (763)
T TIGR00993 335 EANALLKLQENIDGRRPFGFRSRAPPLPYLLSWLLQSRAHPKLPEQQGGDEEDSDIELEDSSDSDEESGEDEYDQLPPFK 414 (763)
T ss_pred cccccccccccccCCCcccccccCCchHHHHHHHhhcCCCCCChhhhcCccccccchhhhccccccccccccccccCCCc
Confidence 99999999998774 34543 499999999999999999999998 455667776655 44488999999999
Q ss_pred ccchHHHHHhhHHhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHhhhccccC------CCCCCC-CCCCCCccccccCCCC
Q 004520 404 ILKKSQFERLSKSQKKSYLDELDYREILYFKKQLKEESRRRKENKLSKEEC------LPNDST-PDEQTSSEAVMLPDMV 476 (747)
Q Consensus 404 ~l~k~~~~~l~~~~~~~y~~e~~~r~~l~~kkq~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~d~~ 476 (747)
||+|+|++||||||||+||||||||||||||||||||+||+|||||++++. ++++++ ++++|++||||||||+
T Consensus 415 ~l~ksq~~kl~k~q~k~y~de~dyr~kl~~kkq~ke~~~r~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~pd~~ 494 (763)
T TIGR00993 415 PLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYSEEVDEENGGPAAVPVPLPDMV 494 (763)
T ss_pred cccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccCcccccccccCCCccccccCcccc
Confidence 999999999999999999999999999999999999999999999999865 333333 6778999999999999
Q ss_pred CCCCCCCCCcccceeeeccCCceeeeeecCCCCCCccCCCCcccchhhhhhccccceeEEEEEeecccceeeeeeceeEE
Q 004520 477 VPPSFDPDCLAYRYRCLVTSDQWLVRPVLDLQGWDHDVGFDGINLETAVEIKSNVFASIAGQITKDKHDFNIHSESAAAY 556 (747)
Q Consensus 477 ~p~sfd~d~~~~ryr~l~~~~~~~~rpv~~~~gwdhd~g~dg~~~e~~~~~~~~~~~~~~~q~~kdk~~~~~~~~~~~~~ 556 (747)
||||||||||+||||||++++|||||||||||||||||||||||+|++++|+++|||+++||||||||||+||+|||+||
T Consensus 495 lp~sFDsD~p~~rYr~l~~~~q~l~rpvl~~~gWDhd~g~dg~~~e~~~~~~~~~p~s~~~q~~kdkk~~~i~~e~~~s~ 574 (763)
T TIGR00993 495 LPASFDSDNPAYRYRYLEPSSQLLTRPVLDTHGWDHDCGYDGVNAERSFAVKEKFPASVTVQVTKDKKDFNIHLDSSVSA 574 (763)
T ss_pred CCCccCCCCccceeecccCccceeEeecccCCCCccccCcCcccHHHHHHHHhcCcceEEEEEeechhhceeeeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeeeeeeeeeccCcceeEEEecceecccccccccccceeEeeeCCeeeeeceeeeeeeecceeEEEEeccceeec
Q 004520 557 VDPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGKRLKLVMNAGRMGGS 636 (747)
Q Consensus 557 ~~~~~~~~~~g~d~q~~~~~~~y~~~~~t~~~~~~~n~~~~g~~~t~~g~~~~~g~k~ed~~~~~~~~~~~~~~g~~~~~ 636 (747)
||++++|+|+||||||+|||||||+||||||||||+|||+||+|+||||++|++|+||||+|+|||||+||+|+|+|+++
T Consensus 575 kh~~~~s~~~g~diQ~~gk~l~yt~r~etk~kn~~~n~t~~g~s~t~lg~~~~~G~K~Ed~~~~gkr~~lv~~~G~~~~~ 654 (763)
T TIGR00993 575 KHGENGSTMAGFDIQNVGKQLAYTVRGETKFKNFRRNKTAAGLSVTFLGENVSTGVKLEDQIALGKRLVLVGSTGTMRSQ 654 (763)
T ss_pred ecCCCcceeeeeehhhhchheEEEEeccceecccccccccceeEEEEecceeeeeeeehheeeeccceEEEEecceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceeEEEecCCCCCCcCccceeeeeeeccccceEEeecccceecccCCceeEEEEeeCCCcceeEEEEecCchhh
Q 004520 637 GQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRKMGQVCIKLNSSAHM 716 (747)
Q Consensus 637 ~~~ayg~~~e~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~~~~g~~~~~~~s~~~~ 716 (747)
||+||||||||+||++|||++++++|||||+|+|||||||||||||||++||+|+|++|||||||++||||||+|||||+
T Consensus 655 gd~Ayg~~~e~~lr~~dyp~~~~~~tl~~s~~~w~~~~~l~~n~qsq~~~gr~s~~~~~~~lnn~~~Gqi~ir~~sse~~ 734 (763)
T TIGR00993 655 GDSAYGANLEVRLREADFPLGQDQSSLGLSLVDWRGDLALGANIQSQVSIGRSSKLAARAGLNNKGSGQISVRTSSSDQL 734 (763)
T ss_pred CcccccceeEEEeecCcCCCCCCcchhceeeeccccceeeeccceeeecccCCceEEEEecccCcccceEEEEeccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccC
Q 004520 717 EIALLAVFSIFRGLLRRKAAEN 738 (747)
Q Consensus 717 ~~a~~~~~~~~~~~~~~~~~~~ 738 (747)
||||+|+|||+++||+|++|+.
T Consensus 735 ~ial~~~~~~~~~l~~~~~~~~ 756 (763)
T TIGR00993 735 QIALVAILPLAKKIYKYYYPQT 756 (763)
T ss_pred HHHHHHHHHHHHHHHHhcCcCC
Confidence 9999999999999999999973
No 2
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=100.00 E-value=5.8e-131 Score=1002.77 Aligned_cols=273 Identities=51% Similarity=0.847 Sum_probs=270.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccceeeeccCCceeeeeecCCCCCCccCCCCcccchhhhhhccccceeEEEEEeec
Q 004520 463 EQTSSEAVMLPDMVVPPSFDPDCLAYRYRCLVTSDQWLVRPVLDLQGWDHDVGFDGINLETAVEIKSNVFASIAGQITKD 542 (747)
Q Consensus 463 ~~~~~~~~~~~d~~~p~sfd~d~~~~ryr~l~~~~~~~~rpv~~~~gwdhd~g~dg~~~e~~~~~~~~~~~~~~~q~~kd 542 (747)
+.|++||||||||+||||||||||+|||||||+++|||||||||||||||||||||||+|++++|+++||++++|||+||
T Consensus 1 ~~~~~v~vp~pD~~lP~SFDsD~p~hRYR~Le~~~q~lvRPVld~~GWDHD~G~DGvn~E~~~~l~~~~pas~~~Qv~KD 80 (273)
T PF11886_consen 1 EGPAQVPVPMPDMALPPSFDSDNPAHRYRCLEPTSQWLVRPVLDPHGWDHDCGFDGVNLERSLVLKKKIPASVSGQVTKD 80 (273)
T ss_pred CCCccceecCCcccCCCCcCCCCCceeeEeecCccceeEeecccCCCcccccCccceehhheehhhcCCceEEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeceeEEeCCCCCeeeeeeeeeccCcceeEEEecceecccccccccccceeEeeeCCeeeeeceeeeeeeecc
Q 004520 543 KHDFNIHSESAAAYVDPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGK 622 (747)
Q Consensus 543 k~~~~~~~~~~~~~~~~~~~~~~~g~d~q~~~~~~~y~~~~~t~~~~~~~n~~~~g~~~t~~g~~~~~g~k~ed~~~~~~ 622 (747)
||||+||+|||+||||++++|+|+||||||+||||+||+||||||||||+|||+||+|+||||++|++|+||||+|+|||
T Consensus 81 Kkd~~i~~e~s~s~kh~~~~s~~~G~DiQt~gkdLaYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgk 160 (273)
T PF11886_consen 81 KKDFNIQLESSASYKHGEGGSSMAGFDIQTVGKDLAYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGK 160 (273)
T ss_pred hhheeEEEeeEEEEEcCCCceEEEEEeeeecCceeEEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccceeecCcccccceeEEEecCCCCCCcCccceeeeeeeccccceEEeecccceecccCCceeEEEEeeCCCc
Q 004520 623 RLKLVMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRK 702 (747)
Q Consensus 623 ~~~~~~~~g~~~~~~~~ayg~~~e~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~~~ 702 (747)
|+|||+|+|+|+++||+||||||||+||++|||++|+++|||||+|+|||||||||||||||++||+|+|++|||||||+
T Consensus 161 rlklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~ 240 (273)
T PF11886_consen 161 RLKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKG 240 (273)
T ss_pred cEEEEEEccEeeecCceeeceeEEEEeecCCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCchhhHHHHHHHHHHHHHHHhhhc
Q 004520 703 MGQVCIKLNSSAHMEIALLAVFSIFRGLLRRKA 735 (747)
Q Consensus 703 ~g~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~ 735 (747)
+||||||+|||||+||||+|+|||+++||+|++
T Consensus 241 ~Gqisik~sSSe~lqIALi~~vpi~~~l~~r~~ 273 (273)
T PF11886_consen 241 TGQISIKTSSSEQLQIALIGLVPIARSLLRRLR 273 (273)
T ss_pred cceEEEEecchHhHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999974
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=5.2e-38 Score=327.72 Aligned_cols=241 Identities=52% Similarity=0.901 Sum_probs=217.5
Q ss_pred cchhHHHHHhhcccCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCC
Q 004520 100 RSDRTRAIAREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPG 179 (747)
Q Consensus 100 g~~~~~~iA~~~~~~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPG 179 (747)
..+.+...+.+.++.+.+....+++|+|+|++|||||||+|+|+|...+.++.+.++|+.+..+...++|.++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPG 88 (249)
T cd01853 9 FPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPG 88 (249)
T ss_pred CcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCC
Confidence 34566777777788777888999999999999999999999999999998988889999999888888999999999999
Q ss_pred CCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCC
Q 004520 180 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGS 259 (747)
Q Consensus 180 l~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~ 259 (747)
+.+....+ ..+..++..+++++....+|++|||++++..+.+..|..+++.|.+.||.++|+++|+|+||+|..+|++.
T Consensus 89 l~~~~~~~-~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 89 LLESVMDQ-RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred cCcchhhH-HHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 99874332 45677788888888877899999999999877667888999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhChHHHHHHHHHHhcccCCcchhhhhhcCCcccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhh
Q 004520 260 SGYPFSYESYVTQCTDLVQQRIHQAVSDARLENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANAL 339 (747)
Q Consensus 260 ~g~~~s~e~~i~q~~~~Lqe~I~q~~~d~~l~~pv~lVEn~p~c~~N~~ge~vLP~~~~W~~~L~~~C~s~ki~~ea~~~ 339 (747)
++.|..++.+..++.+..++.+.....+..+.+|+.+|||+|.|.+|..||++||+++.|+++|+++|++.++..+|..+
T Consensus 168 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~~ 247 (249)
T cd01853 168 NGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANIL 247 (249)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhccccccc
Confidence 99999999998888899999999988888999999999999999999999999999999999999999999999988877
Q ss_pred hc
Q 004520 340 LG 341 (747)
Q Consensus 340 lk 341 (747)
++
T Consensus 248 ~~ 249 (249)
T cd01853 248 LD 249 (249)
T ss_pred cC
Confidence 53
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=2.1e-36 Score=322.41 Aligned_cols=251 Identities=27% Similarity=0.465 Sum_probs=213.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
...++|+|+|++|||||||+|+|+|++.+.++.+.++|..+.......+|.++.||||||+.+.. ..++...+.++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~----~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG----YINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH----HHHHHHHHHHH
Confidence 46799999999999999999999999998888887777776666667789999999999998763 33455666777
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCCCCCCcchhhhhhhChHHHHH
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQ 279 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~~g~~~s~e~~i~q~~~~Lqe 279 (747)
.++...++|++|||++++..+.+..|..+++.|.+.||.++|+++||||||+|..+|++ .+|++|+.++.+.||+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~-----~~~e~fv~~~~~~lq~ 186 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG-----LEYNDFFSKRSEALLR 186 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC-----CCHHHHHHhcHHHHHH
Confidence 77766789999999998876655678999999999999999999999999999998876 5799999999999999
Q ss_pred HHHHHhcccC-----CcchhhhhhcCCcccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccccccCCCCCC
Q 004520 280 RIHQAVSDAR-----LENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIELGPLGNT 354 (747)
Q Consensus 280 ~I~q~~~d~~-----l~~pv~lVEn~p~c~~N~~ge~vLP~~~~W~~~L~~~C~s~ki~~ea~~~lk~~~~~~~~~~~~~ 354 (747)
.|+++.++.+ +++|+.+|||+|.|.+|..||++||+++.|+++|+...... ..+..++++-++..+. +|++|.
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 264 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEV-ISNGSKPIHVDKKLID-GPNPNN 264 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHH-HhCCCCCeEecHHHcc-CCCCCc
Confidence 9999998865 47899999999999999999999999999999999887653 6666777777777766 444433
Q ss_pred ---CCCChhHHHHHhhhccCCCCCcccchhhh
Q 004520 355 ---RVPSMPHLLSSFLRHRSLSSPSEAENEID 383 (747)
Q Consensus 355 ---~~~plp~l~~~ll~~~~~~~~~~~~~~~~ 383 (747)
.+.||-.+.++||..+++.+ .+..|+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 294 (313)
T TIGR00991 265 RGKMFIPLIFAVQYLLVVKPIRR--AIHADIA 294 (313)
T ss_pred ccccHHHHHHHHHHHhhhHHHHH--HHHHHHh
Confidence 78899999999999988887 4444443
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=8.5e-27 Score=256.44 Aligned_cols=230 Identities=18% Similarity=0.178 Sum_probs=176.7
Q ss_pred ccccccccccCCCCCCCCCCCch--------Hh-hhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc-------
Q 004520 19 NRRYSTSQQVPVEDPSPHNQNTD--------DK-MMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------- 82 (747)
Q Consensus 19 ~r~~~~~~~~~~~~~~~~~~~~~--------~e-ek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~------- 82 (747)
+|.|+...-.+......++.+++ +. ..|.+.++++||+++|++|+|.|+++.|..++++|++..
T Consensus 40 Dr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvv 119 (444)
T COG1160 40 DRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVV 119 (444)
T ss_pred CCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 45666655555444445555544 22 346677899999999999999999999999999999874
Q ss_pred -ccccccccchhHHHHhhcchhHHHHHhhcccC-------------C---CCCC--CCCeEEEEEcCCCCcHHHHHHHHh
Q 004520 83 -LATLIRAGESDMKMVNLRSDRTRAIAREQEAT-------------G---IPDL--DFSIRILVLGKTGVGKSATINSIF 143 (747)
Q Consensus 83 -lad~~~~~~~~~~~~~lg~~~~~~iA~~~~~~-------------~---~~~~--~~~lrIlVVGk~GvGKSSLINsLl 143 (747)
|+|+.......++||++|++.+.++|++|+.. . .... ...++|+|||+||||||||+|+|+
T Consensus 120 NK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il 199 (444)
T COG1160 120 NKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL 199 (444)
T ss_pred EcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhc
Confidence 78888777778899999999999999988662 1 0111 146999999999999999999999
Q ss_pred CCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCC
Q 004520 144 DQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGF 223 (747)
Q Consensus 144 G~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~ 223 (747)
|++++.+++.+++|++.....++++|+++.+|||+|+.....-. . .-+.+..++..-....+++|++|++.... ...
T Consensus 200 geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~-e-~~E~~Sv~rt~~aI~~a~vvllviDa~~~-~~~ 276 (444)
T COG1160 200 GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT-E-SVEKYSVARTLKAIERADVVLLVIDATEG-ISE 276 (444)
T ss_pred cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc-c-ceEEEeehhhHhHHhhcCEEEEEEECCCC-chH
Confidence 99999999999999999999999999999999999998764321 0 01111111111112357999999765432 224
Q ss_pred CcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 224 SDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 224 ~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
+|..++..+.+. ++++|||+||||++..
T Consensus 277 qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 277 QDLRIAGLIEEA-----GRGIVIVVNKWDLVEE 304 (444)
T ss_pred HHHHHHHHHHHc-----CCCeEEEEEccccCCc
Confidence 788999999887 7999999999999854
No 6
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.89 E-value=2.1e-23 Score=212.53 Aligned_cols=203 Identities=26% Similarity=0.355 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceec-CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
|||+|+|++|+||||++|+|+|++.+.++ ...++|..+......++|+.+.|||||||.++... ++++.+.+.++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~----~~~~~~~i~~~ 76 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGS----DEEIIREIKRC 76 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEE----HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCccc----HHHHHHHHHHH
Confidence 68999999999999999999999998885 56788999999999999999999999999887543 46677778777
Q ss_pred HhcC--CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCCCCCCcchhhhhhhCh-HHHH
Q 004520 202 IRRS--PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCT-DLVQ 278 (747)
Q Consensus 202 I~~~--~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~~g~~~s~e~~i~q~~-~~Lq 278 (747)
+..+ ++|++|||+++++++ ..+..+++.+.+.||.++|+++|||+|++|.+.+. .+++|+++.. ..++
T Consensus 77 l~~~~~g~ha~llVi~~~r~t--~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-------~~~~~l~~~~~~~l~ 147 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLGRFT--EEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-------SLEDYLKKESNEALQ 147 (212)
T ss_dssp HHHTTT-ESEEEEEEETTB-S--HHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-------THHHHHHHHHHHHHH
T ss_pred HHhccCCCeEEEEEEecCcch--HHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-------cHHHHHhccCchhHh
Confidence 6544 689999999988665 47899999999999999999999999999988654 3889998554 6799
Q ss_pred HHHHHHhcccCCcchhhhhhcCCcccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhcc
Q 004520 279 QRIHQAVSDARLENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGF 342 (747)
Q Consensus 279 e~I~q~~~d~~l~~pv~lVEn~p~c~~N~~ge~vLP~~~~W~~~L~~~C~s~ki~~ea~~~lk~ 342 (747)
+.+++|.+.+...+... .........-...|...+..+..-...||++.++.+++.-.+.
T Consensus 148 ~li~~c~~R~~~f~n~~----~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~~ 207 (212)
T PF04548_consen 148 ELIEKCGGRYHVFNNKT----KDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKEE 207 (212)
T ss_dssp HHHHHTTTCEEECCTTH----HHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH-
T ss_pred HHhhhcCCEEEEEeccc----cchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 99999988765444210 0000000000111222233344444667888888888776553
No 7
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.87 E-value=1.4e-21 Score=195.64 Aligned_cols=156 Identities=21% Similarity=0.345 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceec-CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
++|+++|+||||||||+|+|+|++.+.++ ..+++|+.++.....+.|+++.||||||+.+.... .+.+...+.++
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~----~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVS----PEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCC----hHHHHHHHHHH
Confidence 58999999999999999999999888775 35688999998888889999999999999987432 23344455555
Q ss_pred Hhc--CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCCCCCCcchhhhhhhChHHHHH
Q 004520 202 IRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQ 279 (747)
Q Consensus 202 I~~--~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~~g~~~s~e~~i~q~~~~Lqe 279 (747)
+.. .++|++|||++++.++ ..|..+++.+.+.||..+++++|+|+||+|.+.++ ++++|++.....++.
T Consensus 77 ~~~~~~g~~~illVi~~~~~t--~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-------~~~~~~~~~~~~l~~ 147 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRFT--EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-------TLEDYLENSCEALKR 147 (196)
T ss_pred HHhcCCCCEEEEEEEECCCcC--HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-------cHHHHHHhccHHHHH
Confidence 443 3789999999887754 47889999999999999999999999999998543 588999988889999
Q ss_pred HHHHHhcccCCc
Q 004520 280 RIHQAVSDARLE 291 (747)
Q Consensus 280 ~I~q~~~d~~l~ 291 (747)
.+.+|.+.+...
T Consensus 148 l~~~c~~r~~~f 159 (196)
T cd01852 148 LLEKCGGRYVAF 159 (196)
T ss_pred HHHHhCCeEEEE
Confidence 999997775443
No 8
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=9.5e-18 Score=186.67 Aligned_cols=201 Identities=19% Similarity=0.176 Sum_probs=141.0
Q ss_pred hchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc--------ccccccccchhHHHHhhcchhHHHHHhhcccC--
Q 004520 45 MDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEAT-- 114 (747)
Q Consensus 45 k~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~--------lad~~~~~~~~~~~~~lg~~~~~~iA~~~~~~-- 114 (747)
.+....++++|++++++|++.|.++.+..++++|++.+ |+|.........+++.+++.....+++.++..
T Consensus 70 ~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 70 EQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChH
Confidence 44566789999999999999999999999999998765 66655444444556666664433333322221
Q ss_pred -------------C--CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCC
Q 004520 115 -------------G--IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPG 179 (747)
Q Consensus 115 -------------~--~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPG 179 (747)
. .......++|+++|.+|+|||||+|+|++.+...++..+++|.+........++..+.|+||||
T Consensus 150 ~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G 229 (429)
T TIGR03594 150 DLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAG 229 (429)
T ss_pred HHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCC
Confidence 0 1112345899999999999999999999998888888889999988888888899999999999
Q ss_pred CCCcccchhhhhHHH-HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 180 FLPSCVRNVKRNRKI-MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 180 l~~~~~~~~~~~~~i-l~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+....... ...+.. .....+++ ..+|++++|++.... ....+..++..+.+. .+|+|+|+||||+.
T Consensus 230 ~~~~~~~~-~~~e~~~~~~~~~~~--~~ad~~ilV~D~~~~-~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 230 IRRKGKVT-EGVEKYSVLRTLKAI--ERADVVLLVLDATEG-ITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred ccccccch-hhHHHHHHHHHHHHH--HhCCEEEEEEECCCC-ccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 97653211 001111 11111233 357999999876532 223455666655543 58999999999987
No 9
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.2e-17 Score=184.44 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=138.3
Q ss_pred chHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc--------ccccccccchhHHHHhhcchhHHHHHhhccc----
Q 004520 46 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEA---- 113 (747)
Q Consensus 46 ~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~--------lad~~~~~~~~~~~~~lg~~~~~~iA~~~~~---- 113 (747)
+....+..+|++++++|++.+.+..+..++++|++.+ ++|.........+++.+++.....+++.++.
T Consensus 73 ~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 73 QAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHH
Confidence 3455688999999999999999999999999998765 5664332333345555555432222222111
Q ss_pred -----------CC-CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCC
Q 004520 114 -----------TG-IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181 (747)
Q Consensus 114 -----------~~-~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 181 (747)
.. .......++|+|+|++|+|||||+|+|++.+...++..+++|++.........+..+.|+||||+.
T Consensus 153 l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~ 232 (435)
T PRK00093 153 LLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIR 232 (435)
T ss_pred HHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCC
Confidence 00 011235799999999999999999999999998899889999998888888899999999999997
Q ss_pred CcccchhhhhHHH-HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 182 PSCVRNVKRNRKI-MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 182 ~~~~~~~~~~~~i-l~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
...... ...+.. .....+++ ..+|++|+|++.... ....+..++..+.+. .+|+|+|+||||+.
T Consensus 233 ~~~~~~-~~~e~~~~~~~~~~~--~~ad~~ilViD~~~~-~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 233 RKGKVT-EGVEKYSVIRTLKAI--ERADVVLLVIDATEG-ITEQDLRIAGLALEA-----GRALVIVVNKWDLV 297 (435)
T ss_pred CCcchh-hHHHHHHHHHHHHHH--HHCCEEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence 653321 111111 11111233 356999999876542 223566666666553 58999999999987
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.73 E-value=9.9e-18 Score=164.07 Aligned_cols=122 Identities=17% Similarity=0.325 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
++|+++|.||||||||+|+|+|.. +.+++++++|.+.....+...+..+.||||||++..... ...+.+ ..+++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~--s~ee~v---~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK--SEEERV---ARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSS--SHHHHH---HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCC--CcHHHH---HHHHH
Confidence 589999999999999999999988 778999999999999999999999999999999875322 122222 23455
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEG 258 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~ 258 (747)
...++|++++|++..... .+..++..+.+. ++|+|+|+||+|.+...+
T Consensus 75 ~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATNLE---RNLYLTLQLLEL-----GIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp HHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT-----TSSEEEEEETHHHHHHTT
T ss_pred hhcCCCEEEEECCCCCHH---HHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcC
Confidence 557899999997766543 245566666654 699999999999885443
No 11
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.4e-17 Score=184.66 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=136.4
Q ss_pred chHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc--------ccccccccchhHHHHhhcchhHHHHHhhcccC---
Q 004520 46 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEAT--- 114 (747)
Q Consensus 46 ~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~--------lad~~~~~~~~~~~~~lg~~~~~~iA~~~~~~--- 114 (747)
+....++.+|+++|++|++.+.+..+..+++++++.+ |+|..........++.+++..+..+|+.++..
T Consensus 110 ~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~e 189 (472)
T PRK03003 110 QAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGD 189 (472)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHH
Confidence 3445688999999999999999988888999888654 66654322223345555554433333332221
Q ss_pred --------------CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 115 --------------GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 115 --------------~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
........++|+++|+||||||||+|+|++.....++..+++|++.......++|..+.|+||||+
T Consensus 190 L~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 190 LLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGL 269 (472)
T ss_pred HHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCc
Confidence 001123468999999999999999999999988778888899998887777889999999999998
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 181 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 181 ~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
...... ....+....++.......+|++++|++.+.. ....+..++..+.+. .+|+|+|+||||+..
T Consensus 270 ~~~~~~--~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~-~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 270 RRRVKQ--ASGHEYYASLRTHAAIEAAEVAVVLIDASEP-ISEQDQRVLSMVIEA-----GRALVLAFNKWDLVD 336 (472)
T ss_pred cccccc--cchHHHHHHHHHHHHHhcCCEEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 654211 1112222222211112367999999876542 123455555555442 589999999999863
No 12
>COG1159 Era GTPase [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=169.15 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.+..|+|||+||||||||+|+|+|++.+.+|+.+.||+.......+.+..+++||||||+..+.. ..++.+.+.+..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---ALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch---HHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999988888888899999999999998843 345555566655
Q ss_pred HHhcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 201 FIRRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~-~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
.+ ..+|+||||++.+. +. ..|..+++.+.+. ..|+|+++||+|...++
T Consensus 82 sl--~dvDlilfvvd~~~~~~--~~d~~il~~lk~~-----~~pvil~iNKID~~~~~ 130 (298)
T COG1159 82 AL--KDVDLILFVVDADEGWG--PGDEFILEQLKKT-----KTPVILVVNKIDKVKPK 130 (298)
T ss_pred Hh--ccCcEEEEEEeccccCC--ccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence 55 46899999988775 44 3688888888873 57999999999998654
No 13
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=1.3e-16 Score=189.06 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=137.6
Q ss_pred chHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc--------ccccccccchhHHHHhhcchhHHHHHhhcccC---
Q 004520 46 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEAT--- 114 (747)
Q Consensus 46 ~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~--------lad~~~~~~~~~~~~~lg~~~~~~iA~~~~~~--- 114 (747)
+....++.+|+++|++|++.|+++.+..+++.|++.+ |+|..........++.++++.+.++++.++..
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~e 426 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGD 426 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchH
Confidence 4455689999999999999999999988999998655 55654333333455555555443333332221
Q ss_pred -----------C-C-C---CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCC
Q 004520 115 -----------G-I-P---DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTP 178 (747)
Q Consensus 115 -----------~-~-~---~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTP 178 (747)
. . . ......+|+++|++|||||||+|+|++.+...++..+++|++.......++|.++.|+|||
T Consensus 427 Ll~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTa 506 (712)
T PRK09518 427 LLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTA 506 (712)
T ss_pred HHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECC
Confidence 0 0 0 0123579999999999999999999999887788889999998887788899999999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 179 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 179 Gl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
|+...... ....+....++..-....+|++++|++.... ....+..++..+.+. .+|+|+|+||||+..
T Consensus 507 G~~~~~~~--~~~~e~~~~~r~~~~i~~advvilViDat~~-~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~ 575 (712)
T PRK09518 507 GIKRRQHK--LTGAEYYSSLRTQAAIERSELALFLFDASQP-ISEQDLKVMSMAVDA-----GRALVLVFNKWDLMD 575 (712)
T ss_pred CcccCccc--chhHHHHHHHHHHHHhhcCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 99754221 1111222222211112357999999776532 223455555555442 589999999999863
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3.1e-16 Score=173.90 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=112.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHH
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 196 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~ 196 (747)
..+...++|+++|+||||||||+|+|+++++++|++++|||+++.+..+.++|.++.++||+|++++.-. .....+.+
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~--VE~iGIeR 289 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDV--VERIGIER 289 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccH--HHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999976321 22222222
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCCCCC------C-cchhhh
Q 004520 197 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGY------P-FSYESY 269 (747)
Q Consensus 197 ~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~~g~------~-~s~e~~ 269 (747)
+. +.+ ..+|+||||++.... ....|..++..+. ..+|+++|+||.|+..+...... + ..+..-
T Consensus 290 s~-~~i--~~ADlvL~v~D~~~~-~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~ 359 (454)
T COG0486 290 AK-KAI--EEADLVLFVLDASQP-LDKEDLALIELLP------KKKPIIVVLNKADLVSKIELESEKLANGDAIISISAK 359 (454)
T ss_pred HH-HHH--HhCCEEEEEEeCCCC-CchhhHHHHHhcc------cCCCEEEEEechhcccccccchhhccCCCceEEEEec
Confidence 22 223 368999999776653 1235656665222 25899999999999865432111 0 011111
Q ss_pred hhhChHHHHHHHHHHhcc
Q 004520 270 VTQCTDLVQQRIHQAVSD 287 (747)
Q Consensus 270 i~q~~~~Lqe~I~q~~~d 287 (747)
-.+..+.|.+.|.++...
T Consensus 360 t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 360 TGEGLDALREAIKQLFGK 377 (454)
T ss_pred CccCHHHHHHHHHHHHhh
Confidence 124567788888877554
No 15
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=9.3e-16 Score=140.54 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+|+|.||+|||||+|+|++.+.+.++..+++|+........+.+..+.|+||||+.+..... ........+.+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~--~~~~~~~~~~~~~- 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQD--NDGKEIRKFLEQI- 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHH--HHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhh--HHHHHHHHHHHHH-
Confidence 6999999999999999999998888899889999999777777899999999999998764321 1111233344444
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEec
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 250 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK 250 (747)
..+|+++||++.+. .....+..+++.|. ..+|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 46799999987655 21123556666663 25899999998
No 16
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=6.3e-16 Score=171.06 Aligned_cols=122 Identities=18% Similarity=0.127 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
..|+|||+||||||||+|.|+|+..+.|++++++|++.....+.|.++.+.+|||+|+.+.... .....+.......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~--~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDED--ELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCch--HHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999865321 23334444444444
Q ss_pred hcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 203 RRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~-~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+|++|||++... .+ ..|..+.+.|++. ++|+|+|+||+|...
T Consensus 82 --~eADvilfvVD~~~Git--~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~ 126 (444)
T COG1160 82 --EEADVILFVVDGREGIT--PADEEIAKILRRS-----KKPVILVVNKIDNLK 126 (444)
T ss_pred --HhCCEEEEEEeCCCCCC--HHHHHHHHHHHhc-----CCCEEEEEEcccCch
Confidence 46899999976643 33 4788899988854 799999999999873
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.58 E-value=1.6e-14 Score=152.29 Aligned_cols=119 Identities=22% Similarity=0.257 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+|+|+||||||||+|+|+|++.+.+++.+++|+.........++.++.|+||||+..... .....+.+.+..++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~l- 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSAI- 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHHH-
Confidence 68999999999999999999999888888888998866555555677899999999976521 12233333344444
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|++++|++.+.... .+..++..+... ..|+++|+||+|+.
T Consensus 78 -~~aDvvl~VvD~~~~~~--~~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 78 -GGVDLILFVVDSDQWNG--DGEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred -hhCCEEEEEEECCCCCc--hHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 36799999987765432 224445555432 58999999999986
No 18
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=6.3e-14 Score=141.36 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC-CceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
...-|+++|++|||||||||+|+|+. .+.+|..||.|+.+..+... ..+.|||.||++-..... ...+.+...+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~---~~~~lVDlPGYGyAkv~k-~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD---DELRLVDLPGYGYAKVPK-EVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec---CcEEEEeCCCcccccCCH-HHHHHHHHHHH
Confidence 34579999999999999999999965 68889999999998877642 338999999999887653 55566667777
Q ss_pred HHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 200 KFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 200 ~~I~~~-~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
.++... ....+++++++.... ...|.++++.+.+. ..|++||+||+|.+...
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~-~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPP-KDLDREMIEFLLEL-----GIPVIVVLTKADKLKKS 151 (200)
T ss_pred HHHhhchhheEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCeEEEEEccccCChh
Confidence 888753 345555565554332 23688999999886 78999999999999643
No 19
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.54 E-value=8e-14 Score=148.15 Aligned_cols=127 Identities=28% Similarity=0.393 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCC-------CCceeeE--EEEEeEEcC--eEEEEEeCCCCCCcccchh
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCI--REVKGSVNG--IKVTFIDTPGFLPSCVRNV 188 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~-------~~tT~~~--~~~~~~~~G--~~v~LIDTPGl~~~~~~~~ 188 (747)
+..++|+|+|.+|+|||||||+|++......... ...|... .......+| .++.||||||+++...
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~--- 78 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN--- 78 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc---
Confidence 4578999999999999999999999876655321 1233332 333444456 4689999999987632
Q ss_pred hhhHHHHHHHHH--------------------HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEE
Q 004520 189 KRNRKIMLSVKK--------------------FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 248 (747)
Q Consensus 189 ~~~~~il~~ik~--------------------~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVL 248 (747)
+...++.+.. .+...++|+|||++..........|..+++.+.+ ..|+|+|+
T Consensus 79 --~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~Vi 150 (276)
T cd01850 79 --NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVI 150 (276)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEE
Confidence 1222222221 1112368999999866543333456777777764 37999999
Q ss_pred eccCCCCCC
Q 004520 249 THSSSTLPE 257 (747)
Q Consensus 249 TK~D~l~pd 257 (747)
||+|++.++
T Consensus 151 nK~D~l~~~ 159 (276)
T cd01850 151 AKADTLTPE 159 (276)
T ss_pred ECCCcCCHH
Confidence 999998543
No 20
>PRK00089 era GTPase Era; Reviewed
Probab=99.52 E-value=1.2e-13 Score=146.51 Aligned_cols=123 Identities=21% Similarity=0.234 Sum_probs=88.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
....|+|+|+||||||||+|+|+|++.+.++..+.+|+.........++.+++|+||||+.+... ...+.+......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~---~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR---ALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh---HHHHHHHHHHHH
Confidence 35679999999999999999999999888888777777765544444668999999999976532 122223333333
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+ ..+|++++|++.+.. ....+..+++.+.. ...|+++|+||+|+.
T Consensus 81 ~~--~~~D~il~vvd~~~~-~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 81 SL--KDVDLVLFVVDADEK-IGPGDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred HH--hcCCEEEEEEeCCCC-CChhHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 33 367999999877651 12244555555553 257999999999986
No 21
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.51 E-value=1.5e-13 Score=133.12 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=88.3
Q ss_pred hHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc----------ccccccccc--hhHHHHhhcchh-HHHHHhhccc
Q 004520 47 PLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH----------LATLIRAGE--SDMKMVNLRSDR-TRAIAREQEA 113 (747)
Q Consensus 47 ~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~----------lad~~~~~~--~~~~~~~lg~~~-~~~iA~~~~~ 113 (747)
+.+.++++|++++++|++.+..+.+..+.+++.... |+|...... .....+.-.+.. ...+++....
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 567899999999999999999899999999887521 555543221 111111100000 0001110000
Q ss_pred C------------CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 114 T------------GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 114 ~------------~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
. ........++|+++|.||||||||||+|++...+.++..+++|+....+.. +..+.|+||||+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 0 000112468899999999999999999999999999999999998877653 455899999996
No 22
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.50 E-value=4.7e-13 Score=125.76 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.++|+++|.+|+|||||+|+|+|...+..+....+|+..........+..+.++||||+...... ............
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK---LGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH---HHHHHHHHHHHH
Confidence 57899999999999999999999877766666666666655555556788999999999765321 111222222222
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+ ..+|++++|++..... ...+..+++.+... ..|.++|+||+|+.
T Consensus 80 ~--~~~d~i~~v~d~~~~~-~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 L--KDVDLVLFVVDASEPI-GEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred H--HhCCEEEEEEECCCcc-CchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 2 3679999998776541 12444555555543 47999999999986
No 23
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.50 E-value=4.2e-13 Score=132.24 Aligned_cols=126 Identities=19% Similarity=0.245 Sum_probs=85.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-CceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
...++|+|+|.+|+|||||+|+|++.. ...++...++|..+..+.. + ..+.|+||||+....... .........+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~-~~~~~~~~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSK-EEKEKWQKLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCCh-hHHHHHHHHH
Confidence 556899999999999999999999975 5556677778887765543 2 479999999987653321 1122333333
Q ss_pred HHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 KKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~-~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+++.. .+|++++|++.... ....+..+++.+... .+|+++|+||+|+..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~-~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHP-LKELDLEMLEWLRER-----GIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 4454433 46889999766532 222444555555432 589999999999863
No 24
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.50 E-value=4.5e-13 Score=125.87 Aligned_cols=122 Identities=22% Similarity=0.266 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
++|+++|++|+|||||+|+|++.....++..+++|.........+.+.++.++||||+.+.... ...........++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE---IEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch---HHHHHHHHHHHHH
Confidence 6899999999999999999999887677777888888777777778889999999999765321 1111112222333
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
..+|++++|++.+.... ..+..++.. . ..+|+++|+||+|+..+.
T Consensus 79 --~~~~~~v~v~d~~~~~~-~~~~~~~~~---~----~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 79 --EEADLVLFVIDASRGLD-EEDLEILEL---P----ADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred --hhCCEEEEEEECCCCCC-HHHHHHHHh---h----cCCCEEEEEEchhcCCcc
Confidence 36799999987764321 123333322 2 358999999999987543
No 25
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.1e-13 Score=153.60 Aligned_cols=136 Identities=22% Similarity=0.268 Sum_probs=100.5
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHH
Q 004520 116 IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 116 ~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
.+.+...+.|+|+|+||||||||+|+|..+++++|++.+++|++..+..++++|.+++|+||+|+++..... .....+.
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~-iE~~gI~ 340 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDG-IEALGIE 340 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCCh-hHHHhHH
Confidence 345667799999999999999999999999999999999999999999999999999999999999832221 1122222
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh-CCcc------cccEEEEEeccCCCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF-GTAI------WFNTILVMTHSSSTLP 256 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~f-G~~i------~k~vIIVLTK~D~l~p 256 (747)
.+ ++.+ .++|+|++|++.... ...+|..+.+.|...- |-.. ..+.|++.||.|...+
T Consensus 341 rA-~k~~--~~advi~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 341 RA-RKRI--ERADVILLVVDAEES-DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HH-HHHH--hhcCEEEEEeccccc-ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 22 2222 367999999766321 1235666666665431 1111 3789999999999876
No 26
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=3.6e-13 Score=126.80 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=85.4
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcC
Q 004520 126 LVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 205 (747)
Q Consensus 126 lVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~ 205 (747)
+++|.+|||||||+|+|++.....++..+++|.+.......+.+..+.++||||+.+... .....+......++ .
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~--~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAELAI--E 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHH--H
Confidence 589999999999999999987666677778888887777788899999999999976421 11222333333333 3
Q ss_pred CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 206 PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 206 ~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.+|++++|++..... ...+..+.+.+.+. ..|+++|+||+|+..
T Consensus 76 ~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGREGL-TPADEEIAKYLRKS-----KKPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEeccccC-CccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence 579999997664321 12344555555543 489999999999874
No 27
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=2.4e-13 Score=142.53 Aligned_cols=155 Identities=19% Similarity=0.312 Sum_probs=106.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
...+++|+++|+||+|||||||+||+.+...++..+.+|.........+++..++|+||||+++.... +.+....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~----D~~~r~~~ 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK----DAEHRQLY 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhh----hHHHHHHH
Confidence 34679999999999999999999998777777766556655555555667889999999999987543 33344444
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCCCCC----C-cchhhhhhhC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGY----P-FSYESYVTQC 273 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~~g~----~-~s~e~~i~q~ 273 (747)
...+. +.|++|++++.+..... .|..+++.+.-.. ..+++++++|.+|.+.|...|.. | ..++.|+.++
T Consensus 112 ~d~l~--~~DLvL~l~~~~draL~-~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 112 RDYLP--KLDLVLWLIKADDRALG-TDEDFLRDVIILG---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHhh--hccEEEEeccCCCcccc-CCHHHHHHHHHhc---cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 44543 56899988777654332 4666666655442 24899999999999988533321 1 1355666655
Q ss_pred hHHHHHHHHH
Q 004520 274 TDLVQQRIHQ 283 (747)
Q Consensus 274 ~~~Lqe~I~q 283 (747)
...+.+.|++
T Consensus 186 ~~~~~~~~q~ 195 (296)
T COG3596 186 AEALGRLFQE 195 (296)
T ss_pred HHHHHHHHhh
Confidence 5555555554
No 28
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=6.5e-13 Score=126.33 Aligned_cols=125 Identities=23% Similarity=0.235 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHH-HHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM-LSVKK 200 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il-~~ik~ 200 (747)
.++|+++|.+|+|||||+|+|++.....++..+++|..........++..+.+|||||+.+..... ...+... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVE-EGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchh-ccHHHHHHHHHHH
Confidence 579999999999999999999998777777777788777766777788899999999997653211 1111110 11111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|++...... ..+..+++.+... ..|+++|+||+|+..
T Consensus 81 ~~--~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 81 AI--ERADVVLLVIDATEGIT-EQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred HH--hhcCeEEEEEeCCCCcc-hhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 22 36799999976654321 2333444443332 579999999999874
No 29
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.48 E-value=3.5e-13 Score=143.01 Aligned_cols=147 Identities=18% Similarity=0.106 Sum_probs=101.1
Q ss_pred CCCchHhhhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc------cccccccc--chhHHHHh-hc-------
Q 004520 37 NQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAG--ESDMKMVN-LR------- 100 (747)
Q Consensus 37 ~~~~~~eek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~------lad~~~~~--~~~~~~~~-lg------- 100 (747)
..+|.+..+++.++++.+|++++++|+|.+.++++..+.+.+.... |+|..... ....+.+. .+
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 5678999999999999999999999999999999998888774222 55543221 11111111 01
Q ss_pred ------chhHHHHHhhcccCCC------CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc
Q 004520 101 ------SDRTRAIAREQEATGI------PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN 168 (747)
Q Consensus 101 ------~~~~~~iA~~~~~~~~------~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~ 168 (747)
.+.......+.-.... ......++++++|.|||||||+||+|++...+.++..+++|+..+.+..
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--- 161 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--- 161 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---
Confidence 1111000000000000 0123468999999999999999999999998999999999998876654
Q ss_pred CeEEEEEeCCCCCCcccc
Q 004520 169 GIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 169 G~~v~LIDTPGl~~~~~~ 186 (747)
+..+.|+||||+..+...
T Consensus 162 ~~~~~l~DtPG~~~~~~~ 179 (276)
T TIGR03596 162 SDGLELLDTPGILWPKFE 179 (276)
T ss_pred CCCEEEEECCCcccCCCC
Confidence 346899999999877543
No 30
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.47 E-value=3.9e-13 Score=149.83 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=93.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+|+|+||||||||+|+|++...+.+++.+++|++.......+.|..+.|+||||+..... .....+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~- 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDD---GLDKQIREQAEIAI- 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcch---hHHHHHHHHHHHHH-
Confidence 48999999999999999999998888888899999999888889999999999999864311 12233334444444
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
..+|++++|++.... ....+..+.+.+.+. .+|+++|+||+|....
T Consensus 77 -~~ad~vl~vvD~~~~-~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 77 -EEADVILFVVDGREG-LTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE 122 (429)
T ss_pred -hhCCEEEEEEeCCCC-CCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence 357999999765432 223466677777664 6899999999998743
No 31
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.47 E-value=4.5e-13 Score=142.99 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=102.4
Q ss_pred CCCCchHhhhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc------cccccccc--chhHHHHh-hc------
Q 004520 36 HNQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAG--ESDMKMVN-LR------ 100 (747)
Q Consensus 36 ~~~~~~~eek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~------lad~~~~~--~~~~~~~~-lg------ 100 (747)
..++|.+..+++.+.++.+|++++++|+|.+.++++..+.+.+.... |+|..... .....++. .+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~v 86 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAI 86 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 46789999999999999999999999999999999998888774222 45543211 01111111 00
Q ss_pred -------chhHHH----HHhhccc--CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE
Q 004520 101 -------SDRTRA----IAREQEA--TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV 167 (747)
Q Consensus 101 -------~~~~~~----iA~~~~~--~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~ 167 (747)
.+.... +...... .........++|+++|.|||||||+||+|+|+..+.+++.+++|+..+.+..
T Consensus 87 Sa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-- 164 (287)
T PRK09563 87 NAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-- 164 (287)
T ss_pred ECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--
Confidence 111100 0000000 0001124568999999999999999999999999899999999999876553
Q ss_pred cCeEEEEEeCCCCCCcccc
Q 004520 168 NGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 168 ~G~~v~LIDTPGl~~~~~~ 186 (747)
+..+.|+||||+..+...
T Consensus 165 -~~~~~l~DtPGi~~~~~~ 182 (287)
T PRK09563 165 -GKGLELLDTPGILWPKLE 182 (287)
T ss_pred -CCcEEEEECCCcCCCCCC
Confidence 457899999999887543
No 32
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.46 E-value=3.3e-13 Score=129.62 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe-EEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
+|+++|.+|||||||+|+|.+... .++..+++|...........+. .+.|+||||+.+.... ...+.....+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~~~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE----GKGLGHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc----cCCchHHHHHHH
Confidence 589999999999999999998654 5566666676665555556666 9999999998643211 111112222222
Q ss_pred hcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 203 RRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~-t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+|++++|+++... .....-..+.+.+.+.......+|+++|+||+|+..
T Consensus 77 --~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 77 --ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred --HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 246999999776543 110011233444443321113589999999999864
No 33
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.46 E-value=4.1e-13 Score=137.85 Aligned_cols=128 Identities=30% Similarity=0.446 Sum_probs=91.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceec--C--CC--CceeeEEE--EEeEEcCe--EEEEEeCCCCCCcccch
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETD--A--FQ--PATDCIRE--VKGSVNGI--KVTFIDTPGFLPSCVRN 187 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs--~--~~--~tT~~~~~--~~~~~~G~--~v~LIDTPGl~~~~~~~ 187 (747)
...+.++|+|||.+|.||||++|+|+.......+ + .. +-|..... ...+.+|. ++++||||||++.--
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-- 119 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-- 119 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC--
Confidence 4568899999999999999999999976544421 1 11 22333332 22333554 679999999998622
Q ss_pred hhhhHHHHHHHHHHH--------------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 188 VKRNRKIMLSVKKFI--------------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 188 ~~~~~~il~~ik~~I--------------------~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
|+.-++-|.+++ .+.++|+|||+++..+...+..|..+++.|.+. .++|.|
T Consensus 120 ---N~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPV 190 (336)
T KOG1547|consen 120 ---NDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPV 190 (336)
T ss_pred ---ccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeee
Confidence 233333333222 244789999999998888888999999999998 689999
Q ss_pred EeccCCCCC
Q 004520 248 MTHSSSTLP 256 (747)
Q Consensus 248 LTK~D~l~p 256 (747)
+.|+|.+.-
T Consensus 191 IakaDtlTl 199 (336)
T KOG1547|consen 191 IAKADTLTL 199 (336)
T ss_pred EeecccccH
Confidence 999998853
No 34
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=3.6e-13 Score=144.02 Aligned_cols=128 Identities=21% Similarity=0.242 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
...+|+|.|.||||||||+++|++. ...+.+++.||+.+....++.++.+|.+|||||+.|...+ ..|.--.+++.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~A-kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~--ErN~IE~qAi~- 242 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTA-KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE--ERNEIERQAIL- 242 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcC-CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChH--HhcHHHHHHHH-
Confidence 4568999999999999999999984 4667889999999999999999999999999999998664 33433333332
Q ss_pred HHhcCCCCEEEEEEeccCccCC--CCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~--~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
.++. -.++|||+++.+....- .....+++.+...|. .|+++|+||+|...++
T Consensus 243 AL~h-l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~e 296 (346)
T COG1084 243 ALRH-LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADEE 296 (346)
T ss_pred HHHH-hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccchh
Confidence 1211 23789999776543321 134568888888874 7999999999987443
No 35
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.46 E-value=1.4e-13 Score=149.35 Aligned_cols=152 Identities=18% Similarity=0.114 Sum_probs=107.5
Q ss_pred CCCCCCCCchHhhhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc------ccccccccc--hhHHHHh-h-cc
Q 004520 32 DPSPHNQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAGE--SDMKMVN-L-RS 101 (747)
Q Consensus 32 ~~~~~~~~~~~eek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~------lad~~~~~~--~~~~~~~-l-g~ 101 (747)
.+......|.+..++..+.++.+|+++.++|+|.+.+++++.+.+++.... ++|...... .+.+++. . +.
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~ 92 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGI 92 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCC
Confidence 344557889999999999999999999999999999999999999887443 333332211 1111111 1 00
Q ss_pred -------------hhHHHHHh----hccc--CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEE
Q 004520 102 -------------DRTRAIAR----EQEA--TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIRE 162 (747)
Q Consensus 102 -------------~~~~~iA~----~~~~--~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~ 162 (747)
......+. +... .........++++|||.|||||||+||+|+|+..+.++..+|+|+..++
T Consensus 93 ~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~ 172 (322)
T COG1161 93 KPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW 172 (322)
T ss_pred ccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE
Confidence 00000000 0000 0111234468999999999999999999999999999999999999999
Q ss_pred EEeEEcCeEEEEEeCCCCCCcccc
Q 004520 163 VKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 163 ~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
+... ..+.|+||||+..+...
T Consensus 173 i~~~---~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 173 IKLD---DGIYLLDTPGIIPPKFD 193 (322)
T ss_pred EEcC---CCeEEecCCCcCCCCcc
Confidence 9864 44899999999988543
No 36
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.45 E-value=2.8e-14 Score=152.07 Aligned_cols=126 Identities=29% Similarity=0.457 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceec-CCC------CceeeEEE--EEeEEcC--eEEEEEeCCCCCCcccchhh
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQ------PATDCIRE--VKGSVNG--IKVTFIDTPGFLPSCVRNVK 189 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs-~~~------~tT~~~~~--~~~~~~G--~~v~LIDTPGl~~~~~~~~~ 189 (747)
..++|+|+|.+|+|||||||+|++....... ..+ ..|..+.. ....-+| .++.||||||+++.- .
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~--- 78 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-D--- 78 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-T---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-c---
Confidence 4689999999999999999999997655543 111 12223332 2233334 368999999998762 2
Q ss_pred hhHHHHHHHHHHH--------h-----------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEec
Q 004520 190 RNRKIMLSVKKFI--------R-----------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 250 (747)
Q Consensus 190 ~~~~il~~ik~~I--------~-----------~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK 250 (747)
+...+..+..++ . ..++|+|||+++.........|...++.|.+. .|+|.|+.|
T Consensus 79 -n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaK 151 (281)
T PF00735_consen 79 -NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAK 151 (281)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEEST
T ss_pred -chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEec
Confidence 222222232222 1 23689999998876655545688888888775 799999999
Q ss_pred cCCCCCC
Q 004520 251 SSSTLPE 257 (747)
Q Consensus 251 ~D~l~pd 257 (747)
+|.+.++
T Consensus 152 aD~lt~~ 158 (281)
T PF00735_consen 152 ADTLTPE 158 (281)
T ss_dssp GGGS-HH
T ss_pred ccccCHH
Confidence 9998654
No 37
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.44 E-value=3.1e-13 Score=128.92 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=86.7
Q ss_pred hchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhc--c--------ccccccccch--hHHHHh-hcchhHHHHHhhc
Q 004520 45 MDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRL--H--------LATLIRAGES--DMKMVN-LRSDRTRAIAREQ 111 (747)
Q Consensus 45 k~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl--~--------lad~~~~~~~--~~~~~~-lg~~~~~~iA~~~ 111 (747)
++..+.++.+|++++++|+|.+.+..+..+.+++... + |+|....... ..+.+. .+. ....+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~-~ii~i---- 77 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGI-VVVFF---- 77 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCC-eEEEE----
Confidence 3567889999999999999999999999999998765 2 5554321110 001110 110 00001
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCC
Q 004520 112 EATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLP 182 (747)
Q Consensus 112 ~~~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~ 182 (747)
......-+++++|.|||||||++|+|++.....++..++.|+....+.. + ..+.|+||||+..
T Consensus 78 -----Sa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~DtpG~~~ 140 (141)
T cd01857 78 -----SALKENATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T-PTITLCDCPGLVF 140 (141)
T ss_pred -----EecCCCcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C-CCEEEEECCCcCC
Confidence 1111223899999999999999999999988888877788888766554 2 3689999999964
No 38
>PRK15494 era GTPase Era; Provisional
Probab=99.44 E-value=1.1e-12 Score=143.23 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
...++|+++|.+|||||||+|+|+|...+.+++.+.+|+.........++.++.|+||||+.+... .......+...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 456799999999999999999999998887787778888776666777889999999999965421 11222333333
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+ ..+|++|+|++.... ....+..+++.+... ..|.|+|+||+|+.
T Consensus 127 ~~l--~~aDvil~VvD~~~s-~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 127 SSL--HSADLVLLIIDSLKS-FDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred HHh--hhCCEEEEEEECCCC-CCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 333 367999999764321 112334455555443 46788999999974
No 39
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.43 E-value=6.4e-13 Score=147.67 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC-eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
.|+|||+||||||||+|+|++.. .++++++.+|+.+........+ ..++|+||||+....... ......+.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~----~~Lg~~~l~~i 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG----AGLGIRFLKHL 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch----hhHHHHHHHHH
Confidence 69999999999999999999876 4788899999998888777664 579999999998753321 11222222344
Q ss_pred hcCCCCEEEEEEeccCcc-CC--CCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 203 RRSPPDIVLYFERLDLIS-MG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t-~~--~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
. .++++++|+++.... .. .....+++.+...-..-..+|.|+|+||+|+.
T Consensus 236 ~--radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 236 E--RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred H--hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 3 569999998765221 10 11123444444321111258999999999986
No 40
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.41 E-value=1.3e-12 Score=138.22 Aligned_cols=131 Identities=19% Similarity=0.199 Sum_probs=100.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHH
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 196 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~ 196 (747)
+.....++|+|||.||||||||.|.++|.+++.++....||+.......+-+..+++|+||||+...+.. ......+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~--r~~~l~~s 144 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH--RRHHLMMS 144 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchh--hhHHHHHH
Confidence 3456789999999999999999999999999999998888888888888888899999999999877542 11222222
Q ss_pred ---HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 197 ---SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 197 ---~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
...+.+ ..+|+|++|++... +......+++..+++.. ..|.|+|+||.|...+
T Consensus 145 ~lq~~~~a~--q~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 145 VLQNPRDAA--QNADCVVVVVDASA-TRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred hhhCHHHHH--hhCCEEEEEEeccC-CcCccChHHHHHHHHHh----cCCceeeccchhcchh
Confidence 122222 25799998877765 33345667888888874 4799999999998854
No 41
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.41 E-value=1.4e-12 Score=123.40 Aligned_cols=115 Identities=15% Similarity=0.282 Sum_probs=80.2
Q ss_pred EEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCC
Q 004520 127 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSP 206 (747)
Q Consensus 127 VVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~ 206 (747)
|+|.+|||||||+|++++.. +.++..+++|.+.......+++..+.|+||||+.+.... .....+. ..++....
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~---~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY--SEDEKVA---RDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCC--ChhHHHH---HHHhcCCC
Confidence 58999999999999999975 566667788888777777788899999999998754321 1111121 22332247
Q ss_pred CCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 207 PDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 207 ~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+|++++|++..... .....+..+.+ ..+|+++|+||+|+..
T Consensus 75 ~d~vi~v~d~~~~~---~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATNLE---RNLYLTLQLLE-----LGLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCcch---hHHHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence 89999997765432 23334433433 2589999999999864
No 42
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.40 E-value=3.4e-12 Score=144.06 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=89.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHH-HH
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKI-ML 196 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~i-l~ 196 (747)
.....++|+++|+||||||||+|+|++...+.++.++++|+++......++|.++.++||||+.+... ..+.. ..
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie~~gi~ 274 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVERLGIE 274 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHHHHHHH
Confidence 34567899999999999999999999998888888999999998888888999999999999975421 11111 11
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 197 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 197 ~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
....++ ..+|++++|++.+.... ..+. ++..+.. ..+|+|+|+||+|+..
T Consensus 275 ~~~~~~--~~aD~il~V~D~s~~~s-~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 275 KSFKAI--KQADLVIYVLDASQPLT-KDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHH--hhCCEEEEEEECCCCCC-hhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 112233 35799999987654321 1222 3333221 2579999999999864
No 43
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=3e-12 Score=128.85 Aligned_cols=120 Identities=22% Similarity=0.195 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecC----CCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDA----FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~----~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
+++|+++|++|||||||+|+|+|......+. ...+|.....+.. .....+.++||||+.+.... .+..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~----~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFP----PDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCC----HHHHHHH
Confidence 4789999999999999999999964332211 1123333332221 12457899999999865321 1222222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEG 258 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~ 258 (747)
+.....|++++|.+ +.++ ..|..+++.+.+. .+++++|+||+|+..+..
T Consensus 76 ----~~~~~~d~~l~v~~-~~~~--~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 76 ----MKFSEYDFFIIISS-TRFS--SNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred ----hCccCcCEEEEEeC-CCCC--HHHHHHHHHHHHh-----CCCEEEEEecccchhhhh
Confidence 22246789888843 2232 4677888888775 478999999999986543
No 44
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.39 E-value=3.7e-13 Score=149.39 Aligned_cols=130 Identities=25% Similarity=0.265 Sum_probs=95.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
..-+++|+|.||||||||+|.+.- ....+.+++.||+......+.+.-..|.+|||||+.+.-.++ .|.--+.+|..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtr-advevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd--rN~IEmqsITA 243 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTR-ADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED--RNIIEMQIITA 243 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccc-cccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhh--hhHHHHHHHHH
Confidence 345899999999999999999884 445667888888888777777777899999999999875542 23222333322
Q ss_pred HHhcCCCCEEEEEEeccCccCC--CCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEG 258 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~--~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~ 258 (747)
.... .-+|||+++++..... .....++..|...|- .+++|+|+||+|.+.|++
T Consensus 244 LAHL--raaVLYfmDLSe~CGySva~QvkLfhsIKpLFa---NK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 244 LAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA---NKVTILVLNKIDAMRPED 298 (620)
T ss_pred HHHh--hhhheeeeechhhhCCCHHHHHHHHHHhHHHhc---CCceEEEeecccccCccc
Confidence 1111 2578999888753321 234578888888885 689999999999998875
No 45
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=3.9e-12 Score=142.39 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
.+|+|+|++|||||||+|+|++...+.++..+++|++.......+.|..+.|+||||+..... .....+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---GFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---hHHHHHHHHHHHHH
Confidence 479999999999999999999998888888889999988888888999999999999976311 11222223333333
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|++|+|++.... ....+..+.+.+.+. .+|+|+|+||+|..
T Consensus 79 --~~ad~il~vvd~~~~-~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 79 --EEADVILFVVDGRAG-LTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred --HhCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 357999999876532 123455667777654 58999999999964
No 46
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=2.8e-12 Score=140.01 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
.|+|||.||||||||+|+|.+.. ..+++++.+|..+......+ ++.+++|+||||+.+.... ...+...+.+++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~----~~gLg~~flrhi 234 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE----GAGLGHRFLKHI 234 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc----cccHHHHHHHHh
Confidence 69999999999999999999854 55788888999988877777 5678999999999865332 122333333444
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhCCc-ccccEEEEEeccCCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTA-IWFNTILVMTHSSSTL 255 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~-~lLk~L~e~fG~~-i~k~vIIVLTK~D~l~ 255 (747)
+ +.+++++|++++.... ..+. .+.+.|... ... ..+|+++|+||+|+..
T Consensus 235 e--~a~vlI~ViD~s~~~s-~e~~~~~~~EL~~~-~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 235 E--RTRLLLHLVDIEAVDP-VEDYKTIRNELEKY-SPELADKPRILVLNKIDLLD 285 (335)
T ss_pred h--hcCEEEEEEcCCCCCC-HHHHHHHHHHHHHh-hhhcccCCeEEEEECcccCC
Confidence 3 4689999987664321 1222 233333332 221 2589999999999863
No 47
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.38 E-value=3.3e-12 Score=140.21 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
..++|+++|.||||||||+|+|++.+ +.+.+.+++|.++......+ +|.++.|+||||+...... ...+.+ ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~--~lie~f-~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH--ELVAAF-RATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH--HHHHHH-HHHH
Confidence 45899999999999999999999987 55666778888877766666 6789999999999432110 111111 1111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHH-HHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFP-LLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~-lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+ ..+|++|+|++.+.... ..+.. +.+.+.+ ++. ..+|+|+|+||+|+..
T Consensus 264 e~~--~~ADlil~VvD~s~~~~-~~~~~~~~~~L~~-l~~-~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 264 EEV--READLLLHVVDASDPDR-EEQIEAVEKVLEE-LGA-EDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHH--HhCCEEEEEEECCCCch-HHHHHHHHHHHHH-hcc-CCCCEEEEEEeecCCC
Confidence 222 35799999987654321 11221 2233333 221 2479999999999863
No 48
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.38 E-value=5.5e-12 Score=121.18 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=78.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+++|.+|||||||+|+|++... .++..+.+|..+........+.++.|+||||+.+..... .+.-....+. .+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~-~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE--RNTIEMQAIT-ALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC--CchHHHHHHH-HHH
Confidence 699999999999999999998754 344455667777665556678899999999986532211 1100011111 111
Q ss_pred cCCCCEEEEEEeccCccC-C-CCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 204 RSPPDIVLYFERLDLISM-G-FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~-~-~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
...|++|+|++...... . .....+++.+.+.+ ...|+|+|+||+|+..
T Consensus 78 -~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 78 -HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLT 127 (168)
T ss_pred -hccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCc
Confidence 23588999876653321 0 11123455554433 1579999999999864
No 49
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=6.5e-12 Score=142.78 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
..+|+|||.||||||||+|+|++...+.++..+++|++.......+.|..+.|+||||+.... . .....+......+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~-~--~~~~~~~~~~~~~ 114 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA-K--GLQASVAEQAEVA 114 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc-h--hHHHHHHHHHHHH
Confidence 368999999999999999999998877788888899998888888899999999999986321 1 1122233333334
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+. .+|++|+|++..... ...+..+++.+... .+|+|+|+||+|+.
T Consensus 115 ~~--~aD~il~VvD~~~~~-s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 115 MR--TADAVLFVVDATVGA-TATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred HH--hCCEEEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 43 579999998775432 12455666666543 68999999999975
No 50
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.37 E-value=1.8e-12 Score=124.75 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=77.5
Q ss_pred EEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcC
Q 004520 127 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 205 (747)
Q Consensus 127 VVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~ 205 (747)
++|++|||||||+|+|++.+. .++..+++|.++......+. +.++.|+||||+.+.... .+.+...+...+ .
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~~~~~--~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE----GRGLGNQFLAHI--R 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc----CCCccHHHHHHH--h
Confidence 589999999999999999875 55667778877766666677 899999999998653211 111111222222 2
Q ss_pred CCCEEEEEEeccCcc-----CCCCcH-HHHHHHHHHhCC-----cccccEEEEEeccCCCC
Q 004520 206 PPDIVLYFERLDLIS-----MGFSDF-PLLKLMTEVFGT-----AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 206 ~~DvVL~V~~ld~~t-----~~~~D~-~lLk~L~e~fG~-----~i~k~vIIVLTK~D~l~ 255 (747)
.+|++++|++..... ....+. .....+...... ...+|+++|+||+|+..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 479999997765431 101111 122223222110 13589999999999874
No 51
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.36 E-value=5.1e-12 Score=125.64 Aligned_cols=58 Identities=34% Similarity=0.439 Sum_probs=51.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
...++|+++|.||||||||||+|+|...+.++..+++|+..+++.. +.++.|+||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 4458999999999999999999999999999999999998887764 457899999996
No 52
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.36 E-value=5.7e-12 Score=142.50 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
...++|+++|.||||||||+|+|++.+.+.+++.+++|++.......++|.++.|+||||+.+.... .....+.. ..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~--ie~~gi~~-~~ 289 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDE--VEKIGIER-SR 289 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccH--HHHHHHHH-HH
Confidence 3468999999999999999999999988888888999999888888889999999999999754211 00111111 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
.++ ..+|++++|++.+.... ..+..++ .. ....|+++|+||+|+..+
T Consensus 290 ~~~--~~aD~il~VvD~s~~~s-~~~~~~l---~~----~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 290 EAI--EEADLVLLVLDASEPLT-EEDDEIL---EE----LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHH--HhCCEEEEEecCCCCCC-hhHHHHH---Hh----cCCCCcEEEEEhhhcccc
Confidence 222 35799999977654321 1232222 22 125799999999999754
No 53
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.34 E-value=1.9e-11 Score=120.77 Aligned_cols=126 Identities=19% Similarity=0.243 Sum_probs=81.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-CceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
+..++|+|+|.+|||||||+|+|++.. ...++...++|..+..+.. +.++.|+||||+....... ...+.....+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~-~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSK-EEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCc-hHHHHHHHHH
Confidence 356799999999999999999999975 5566666677777665442 4789999999986543221 1122222333
Q ss_pred HHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 KKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~-~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..++... ..+++++|++.+.. ....+..+.+.+.. .+.|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHP-LKELDLQMIEWLKE-----YGIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHhCccceEEEEEEecCCC-CCHHHHHHHHHHHH-----cCCcEEEEEECcccCC
Confidence 3344332 45677777554322 11233345555533 2578999999999873
No 54
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.34 E-value=5.5e-12 Score=136.74 Aligned_cols=128 Identities=25% Similarity=0.399 Sum_probs=90.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceec---CCCC----ceeeEEEEEeEE--cCe--EEEEEeCCCCCCcccchh
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETD---AFQP----ATDCIREVKGSV--NGI--KVTFIDTPGFLPSCVRNV 188 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs---~~~~----tT~~~~~~~~~~--~G~--~v~LIDTPGl~~~~~~~~ 188 (747)
+..++|+++|.+|.|||||||+|++....... ...+ .|..+......+ +|. ++++|||||+++.-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i---- 96 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI---- 96 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc----
Confidence 56799999999999999999999997333221 1222 223333333333 443 68999999999872
Q ss_pred hhhHHHHHHHHHHHh--------------------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEE
Q 004520 189 KRNRKIMLSVKKFIR--------------------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 248 (747)
Q Consensus 189 ~~~~~il~~ik~~I~--------------------~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVL 248 (747)
.+...+..+..++. +.++|+|||+++..+......|..+++.|.+. .++|.|+
T Consensus 97 -dNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI 169 (373)
T COG5019 97 -DNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVI 169 (373)
T ss_pred -cccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeee
Confidence 22333333333321 33799999999887777777899999999886 6999999
Q ss_pred eccCCCCCCC
Q 004520 249 THSSSTLPEG 258 (747)
Q Consensus 249 TK~D~l~pd~ 258 (747)
.|+|.+.+++
T Consensus 170 ~KaD~lT~~E 179 (373)
T COG5019 170 AKADTLTDDE 179 (373)
T ss_pred eccccCCHHH
Confidence 9999997654
No 55
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.34 E-value=9.1e-12 Score=122.57 Aligned_cols=142 Identities=22% Similarity=0.171 Sum_probs=94.5
Q ss_pred CCCchHhhhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc------ccccccccc--hhHHHHhh---------
Q 004520 37 NQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAGE--SDMKMVNL--------- 99 (747)
Q Consensus 37 ~~~~~~eek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~------lad~~~~~~--~~~~~~~l--------- 99 (747)
+.+|.+...++.++++++|++++++|++.+.+..+..+.+.+.... |+|...... ...+++..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEE
Confidence 4567788889999999999999999999998888877777664322 555432211 11111110
Q ss_pred -----cchhHHHHHhhc-----ccCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC
Q 004520 100 -----RSDRTRAIAREQ-----EATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG 169 (747)
Q Consensus 100 -----g~~~~~~iA~~~-----~~~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G 169 (747)
+.+......... ...........++++++|.+|||||||+|+|++.....++..+++|...+.+...
T Consensus 83 a~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~--- 159 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS--- 159 (171)
T ss_pred CCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---
Confidence 111111100000 0000012234579999999999999999999998887888888889888776653
Q ss_pred eEEEEEeCCCCC
Q 004520 170 IKVTFIDTPGFL 181 (747)
Q Consensus 170 ~~v~LIDTPGl~ 181 (747)
..+.++||||+.
T Consensus 160 ~~~~~iDtpG~~ 171 (171)
T cd01856 160 PGIYLLDTPGIL 171 (171)
T ss_pred CCEEEEECCCCC
Confidence 568999999984
No 56
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.33 E-value=9.4e-12 Score=139.62 Aligned_cols=123 Identities=12% Similarity=0.091 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
.|+|||.||||||||||+|++.+ ..+++++.+|..+......+. +..++|+||||+...... ...+...+.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~----~~gLg~~fLrhi 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE----GVGLGHQFLRHI 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc----cchHHHHHHHHH
Confidence 79999999999999999999865 456778888988887776666 789999999999764222 222333333344
Q ss_pred hcCCCCEEEEEEeccCc-cCCC-Cc-HHHHHHHHHHhCCcccccEEEEEeccCC
Q 004520 203 RRSPPDIVLYFERLDLI-SMGF-SD-FPLLKLMTEVFGTAIWFNTILVMTHSSS 253 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~-t~~~-~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~ 253 (747)
. +.+++++|++++.. .... .+ ..+.+.|......-..+|.|||+||+|+
T Consensus 235 e--r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 235 E--RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred h--hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 2 46999999887543 1111 11 2334444433111236899999999996
No 57
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.32 E-value=5.1e-12 Score=134.33 Aligned_cols=151 Identities=19% Similarity=0.154 Sum_probs=104.2
Q ss_pred CCCCCchHhhhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHH---------hccccccccccchhHHHHh-hcch--
Q 004520 35 PHNQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLY---------RLHLATLIRAGESDMKMVN-LRSD-- 102 (747)
Q Consensus 35 ~~~~~~~~eek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~---------rl~lad~~~~~~~~~~~~~-lg~~-- 102 (747)
-...+|.++.+.+.+.+...|+++++.|||+|+|++|.++...+. |.+|++..... ...++++ -...
T Consensus 28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k-~~iq~~~~~~~~~~ 106 (335)
T KOG2485|consen 28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQK-KIIQYLEWQNLESY 106 (335)
T ss_pred cCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhh-HHHHHHHhhcccch
Confidence 457889999999999999999999999999999999999998775 33344411100 0011110 0000
Q ss_pred --------------hHHH----HHhhcccCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhC-----CCCceecCCCCceee
Q 004520 103 --------------RTRA----IAREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFD-----QTKTETDAFQPATDC 159 (747)
Q Consensus 103 --------------~~~~----iA~~~~~~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG-----~~~a~vs~~~~tT~~ 159 (747)
.... ++.+... -+.......+++|+|-||||||||||++.. ...+.+++.++.|+.
T Consensus 107 ~~~~c~~~~~~~v~~l~~il~~~~~~l~r-~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~ 185 (335)
T KOG2485|consen 107 IKLDCNKDCNKQVSPLLKILTILSEELVR-FIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRR 185 (335)
T ss_pred hhhhhhhhhhhccccHHHHHHHHHHHHHH-hhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceee
Confidence 0000 1111111 112345678999999999999999999942 255667889999999
Q ss_pred EEEEEeEEcCeEEEEEeCCCCCCcccch
Q 004520 160 IREVKGSVNGIKVTFIDTPGFLPSCVRN 187 (747)
Q Consensus 160 ~~~~~~~~~G~~v~LIDTPGl~~~~~~~ 187 (747)
+...........+.++||||+..+++.+
T Consensus 186 V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 186 VSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred ehhheEeccCCceEEecCCCcCCCCCCC
Confidence 8875544466789999999999887653
No 58
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.32 E-value=1.2e-11 Score=134.69 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=83.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC-eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
.|+|||.||||||||+|+|.+.. ..+++++.+|..+......+.+ .++.|+||||+.+.... ...+...+.+++
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~----~~gLg~~flrhi 233 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE----GAGLGHRFLKHI 233 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc----cccHHHHHHHHH
Confidence 79999999999999999999864 4577788888888777777766 89999999999765322 112223333344
Q ss_pred hcCCCCEEEEEEeccCcc--CCCCcH-HHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 203 RRSPPDIVLYFERLDLIS--MGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t--~~~~D~-~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
. +++++|+|++++... ....+. .+.+.+...-..-..+|++||+||+|+..
T Consensus 234 e--rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 234 E--RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred H--hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 2 458999998766431 101111 22233332211113589999999999863
No 59
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.32 E-value=1.7e-11 Score=145.95 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
.+|+|+|+||||||||+|+|+|...+.++..+++|++.......+.+..+.|+||||+..... .....+......++
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~ 352 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE---GIDSAIASQAQIAV 352 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc---cHHHHHHHHHHHHH
Confidence 589999999999999999999988888888899999988888888999999999999864311 12233333444444
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|++|+|++.... ....+..+.+.+.+. .+|+|+|+||+|+.
T Consensus 353 --~~aD~iL~VvDa~~~-~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 353 --SLADAVVFVVDGQVG-LTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred --HhCCEEEEEEECCCC-CCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 357999999776431 223455666666543 68999999999975
No 60
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=6e-13 Score=146.32 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=123.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC-----CCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFD-----QTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG-----~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
..++|+|+|.+|+|||||||+|.| +..+.++. ..+|.+...|.-. .-.+++++|.||++.+... .+..+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~----~~~Yl 107 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFP----PEEYL 107 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-S-S-TTEEEEEE--GGGSS------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCC----HHHHH
Confidence 368999999999999999999977 23333343 2467777776632 3347999999999876433 23333
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCCCCCCcchhhhhhhChH
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTD 275 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~~g~~~s~e~~i~q~~~ 275 (747)
+.+ .....|++|++. .++++ ..|..+++.+.+. ++++.+|-||+|.-...+....|..+.+ .+...
T Consensus 108 ~~~----~~~~yD~fiii~-s~rf~--~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~--e~~L~ 173 (376)
T PF05049_consen 108 KEV----KFYRYDFFIIIS-SERFT--ENDVQLAKEIQRM-----GKKFYFVRTKVDSDLYNERRRKPRTFNE--EKLLQ 173 (376)
T ss_dssp HHT----TGGG-SEEEEEE-SSS----HHHHHHHHHHHHT-----T-EEEEEE--HHHHHHHHHCC-STT--H--HTHHH
T ss_pred HHc----cccccCEEEEEe-CCCCc--hhhHHHHHHHHHc-----CCcEEEEEecccccHhhhhccCCcccCH--HHHHH
Confidence 332 234679887763 34444 3788888888886 7999999999996211111111211211 11123
Q ss_pred HHHHHHHHHhcccCCcch-hhhhhcCCcc-----cccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccccccC
Q 004520 276 LVQQRIHQAVSDARLENQ-VLLVENHPQC-----RRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIELG 349 (747)
Q Consensus 276 ~Lqe~I~q~~~d~~l~~p-v~lVEn~p~c-----~~N~~ge~vLP~~~~W~~~L~~~C~s~ki~~ea~~~lk~~~~~~~~ 349 (747)
.+++.+.+.+...++..| +-+|.+...+ .-...-++.||....-.-.+.+..++..+++.....++.+....+.
T Consensus 174 ~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~~Al 253 (376)
T PF05049_consen 174 EIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWLEAL 253 (376)
T ss_dssp HHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555543 3445543322 2222334678888777777888888889999999999998876655
Q ss_pred CCCCCCCCChhHHH
Q 004520 350 PLGNTRVPSMPHLL 363 (747)
Q Consensus 350 ~~~~~~~~plp~l~ 363 (747)
..+.....|+|++.
T Consensus 254 ~s~~~a~iP~~g~~ 267 (376)
T PF05049_consen 254 KSAAVATIPVPGLS 267 (376)
T ss_dssp HT--BSS-CCCSS-
T ss_pred HHHHhccCCCcccc
Confidence 54555667777755
No 61
>PRK04213 GTP-binding protein; Provisional
Probab=99.31 E-value=2.9e-11 Score=120.63 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
..++|+++|.+|||||||+|+|+|.. +.++..+++|.....+. +. ++.++||||+...........+.....+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 45799999999999999999999876 45555666666654433 22 689999999754321110112222222333
Q ss_pred HHhc--CCCCEEEEEEeccCccC---C-------CCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRR--SPPDIVLYFERLDLISM---G-------FSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~--~~~DvVL~V~~ld~~t~---~-------~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++.. ..++++++|++.+.... . ..+..+++.+.. ...|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECcccc
Confidence 3321 24678888876543210 0 012333444433 257999999999975
No 62
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.31 E-value=1.8e-11 Score=112.99 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=79.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcC
Q 004520 127 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 205 (747)
Q Consensus 127 VVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~ 205 (747)
|+|++|+|||||+|+|++......+...++|........... +..+.++||||+.+..... ..........+ .
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~----~~~~~~~~~~~--~ 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG----REREELARRVL--E 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch----hhHHHHHHHHH--H
Confidence 589999999999999999877767777777877776665554 7799999999998764321 11122233333 3
Q ss_pred CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 206 PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 206 ~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
.+|++++|++....... ....+...... ...|+++|+||+|...+
T Consensus 75 ~~d~il~v~~~~~~~~~-~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 75 RADLILFVVDADLRADE-EEEKLLELLRE-----RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hCCEEEEEEeCCCCCCH-HHHHHHHHHHh-----cCCeEEEEEEccccCCh
Confidence 57999999776654321 11111222222 36899999999998753
No 63
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.30 E-value=1.9e-11 Score=139.20 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
-..|+|||.||||||||||+|++.. ..+++++.+|..+....+.+.+.+++|+||||+.+.... ...+...+.++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~----g~gLg~~fLrh 233 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE----GKGLGLDFLRH 233 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccch----hhHHHHHHHHH
Confidence 3489999999999999999999864 456788889998888888888899999999999764322 12222333334
Q ss_pred HhcCCCCEEEEEEeccCcc---CCCCcHH-HHHHHHHHhC---------CcccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLIS---MGFSDFP-LLKLMTEVFG---------TAIWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t---~~~~D~~-lLk~L~e~fG---------~~i~k~vIIVLTK~D~l 254 (747)
+. .+|++++|++..... ....+.. +.+.|..... .-..+|+|||+||+|+.
T Consensus 234 ie--radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 234 IE--RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred HH--hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 43 469999997765321 1112222 2223433221 11358999999999975
No 64
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.1e-11 Score=135.07 Aligned_cols=129 Identities=25% Similarity=0.376 Sum_probs=90.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcee------cCCCCceeeEEEEEeEE--cCe--EEEEEeCCCCCCcccchh
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTET------DAFQPATDCIREVKGSV--NGI--KVTFIDTPGFLPSCVRNV 188 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v------s~~~~tT~~~~~~~~~~--~G~--~v~LIDTPGl~~~~~~~~ 188 (747)
.++.++++++|.+|.|||||||+||+...... ..-+..|..+......+ +|. +++||||||+++.--
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vd--- 94 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVD--- 94 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccc---
Confidence 35679999999999999999999998743321 11122344444444333 444 678999999998722
Q ss_pred hhhHHHHHHH--------HHHHh-----------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 189 KRNRKIMLSV--------KKFIR-----------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 189 ~~~~~il~~i--------k~~I~-----------~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
+...+..+ ..++. +.++|+|||+++..+......|..+++.+... .++|.|+.
T Consensus 95 --ns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~ 166 (366)
T KOG2655|consen 95 --NSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIA 166 (366)
T ss_pred --ccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceee
Confidence 22222222 22221 23799999999877776667898999998886 69999999
Q ss_pred ccCCCCCCC
Q 004520 250 HSSSTLPEG 258 (747)
Q Consensus 250 K~D~l~pd~ 258 (747)
|+|.+.+++
T Consensus 167 KaD~lT~~E 175 (366)
T KOG2655|consen 167 KADTLTKDE 175 (366)
T ss_pred ccccCCHHH
Confidence 999997654
No 65
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.29 E-value=3.6e-11 Score=120.46 Aligned_cols=127 Identities=17% Similarity=0.108 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe-EEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
...++|+|+|.+|||||||+|.|++.... +.....+|.+.......+.+. .+.|+||||+.+.... .........+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHH
Confidence 34579999999999999999999997633 233334455544444444454 8999999998653211 1111111111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~-~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+ ..+|++++|++...... ..+. .+.+.+... +. ...|+++|+||+|+..
T Consensus 116 -~~~--~~~d~ii~v~D~~~~~~-~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 116 -EEV--AEADLLLHVVDASDPDY-EEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLD 167 (204)
T ss_pred -HHH--hcCCeEEEEEECCCCCh-hhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCC
Confidence 112 35799999977654321 1222 223333332 21 2479999999999874
No 66
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.29 E-value=5e-11 Score=113.23 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceec--CCCCceeeEEEEEeEEc-CeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs--~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.|+++|.+|||||||+|+|.+....... ..+++|.........+. +..+.++||||... . ...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~----~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------F----IKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------H----HHHHHh
Confidence 6899999999999999999986433322 12345555555555555 78999999999631 1 112222
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|++.+.... ......+..+.. .+ .+|+++|+||+|+.
T Consensus 71 ~~--~~ad~ii~V~d~~~~~~-~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~ 117 (164)
T cd04171 71 GA--GGIDLVLLVVAADEGIM-PQTREHLEILEL-LG---IKRGLVVLTKADLV 117 (164)
T ss_pred hh--hcCCEEEEEEECCCCcc-HhHHHHHHHHHH-hC---CCcEEEEEECcccc
Confidence 22 35799999987653111 122233333322 22 24899999999986
No 67
>PRK11058 GTPase HflX; Provisional
Probab=99.28 E-value=2.2e-11 Score=137.00 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe-EEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.+|+|+|.||||||||+|+|++.+.+ +.+.+++|.++......+.+. .+.|+||||+... .. ......+...
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp-----~~lve~f~~t 270 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LP-----HDLVAAFKAT 270 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CC-----HHHHHHHHHH
Confidence 58999999999999999999998765 566677888877666666554 8999999999432 11 1112222222
Q ss_pred Hh-cCCCCEEEEEEeccCccCCCCcHHH-HHHHHHHhCCcccccEEEEEeccCCC
Q 004520 202 IR-RSPPDIVLYFERLDLISMGFSDFPL-LKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~-~~~~DvVL~V~~ld~~t~~~~D~~l-Lk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+. ...+|++|+|++.+.... ..+... .+.+.+. +. ...|+|+|+||+|+.
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~-~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRV-QENIEAVNTVLEEI-DA-HEIPTLLVMNKIDML 322 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccH-HHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCC
Confidence 22 136899999977654321 112222 2233332 21 257999999999986
No 68
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.28 E-value=3.5e-11 Score=143.85 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=88.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchh--hhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~--~~~~~il~~ik 199 (747)
.++|+++|.||||||||+|+|+|.. ..+++.+++|.+.......+.+.++.++||||+.+-..... ...+.+ .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i---~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI---AC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH---HH
Confidence 5789999999999999999999975 46788899999988888888899999999999986432100 111221 23
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++....+|++++|++.+... ....+...+.+. +.|+++|+||+|...
T Consensus 79 ~~l~~~~aD~vI~VvDat~le---r~l~l~~ql~e~-----giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLE---RNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (772)
T ss_pred HHHhccCCCEEEEEecCCcch---hhHHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence 344445789999997655432 233344444433 689999999999863
No 69
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.27 E-value=6.8e-12 Score=121.42 Aligned_cols=58 Identities=34% Similarity=0.497 Sum_probs=51.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
....+|+++|.|||||||++|+|++...+.++..+++|+....+.. +..+.||||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 4568999999999999999999999988888888899999887654 356899999996
No 70
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3.5e-11 Score=138.91 Aligned_cols=126 Identities=16% Similarity=0.275 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
..+|+++|.|||||||++|+|+|. ...+++.+++|.+..+......|.++.++|.||.+.-..- ..+++ ..+++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~-~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~--S~DE~---Var~~ 76 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGA-NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY--SEDEK---VARDF 76 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhcc-CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC--CchHH---HHHHH
Confidence 457999999999999999999995 5788999999999999999999999999999999976432 22333 34567
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCCCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSG 261 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd~~~g 261 (747)
+.+.++|+++-|++.... ++++.-+++ .+ +++.|+|+++|.+|.+...+..-
T Consensus 77 ll~~~~D~ivnVvDAtnL-----eRnLyltlQ-Ll--E~g~p~ilaLNm~D~A~~~Gi~I 128 (653)
T COG0370 77 LLEGKPDLIVNVVDATNL-----ERNLYLTLQ-LL--ELGIPMILALNMIDEAKKRGIRI 128 (653)
T ss_pred HhcCCCCEEEEEcccchH-----HHHHHHHHH-HH--HcCCCeEEEeccHhhHHhcCCcc
Confidence 777899999999554433 222222222 11 34789999999999997666433
No 71
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.26 E-value=5.1e-12 Score=136.98 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=101.9
Q ss_pred chHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc----------ccccccccchh---------------HHHHhhc
Q 004520 46 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH----------LATLIRAGESD---------------MKMVNLR 100 (747)
Q Consensus 46 ~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~----------lad~~~~~~~~---------------~~~~~lg 100 (747)
+++..|..+||++.|||||.|+.++...++.+|++-. +|+........ +...+.+
T Consensus 206 ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~ns 285 (572)
T KOG2423|consen 206 ELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNS 285 (572)
T ss_pred HHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCc
Confidence 5677899999999999999999999999999998533 56655443211 0111222
Q ss_pred chhHHHHHhhcccCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 101 SDRTRAIAREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 101 ~~~~~~iA~~~~~~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
|+....+.....-.........+-|.+||.||+||||+||+|-.++++.|.++++.|+-.+.+... +.|.|||+||+
T Consensus 286 fGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGv 362 (572)
T KOG2423|consen 286 FGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGV 362 (572)
T ss_pred cchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCc
Confidence 333333332222233334456789999999999999999999999999999999999988777643 67899999999
Q ss_pred CCccc
Q 004520 181 LPSCV 185 (747)
Q Consensus 181 ~~~~~ 185 (747)
..++.
T Consensus 363 Vyps~ 367 (572)
T KOG2423|consen 363 VYPSS 367 (572)
T ss_pred cCCCC
Confidence 87753
No 72
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.26 E-value=7.7e-11 Score=111.18 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=77.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCC-CCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 125 ILVLGKTGVGKSATINSIFDQ-TKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~-~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
|+++|.+|+|||||+|+|++. .....+...+.|.....+.. . ..++++||||+....... ...+.....+..++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCH-HHHHHHHHHHHHHHH
Confidence 799999999999999999953 33334555555655544432 2 389999999997653211 112223333444444
Q ss_pred cC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 204 RS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 204 ~~-~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
.. ..+.++++++.+.... ..+..+++.+... ..|+++|+||+|...+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~-~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPT-EIDLEMLDWLEEL-----GIPFLVVLTKADKLKK 125 (170)
T ss_pred hChhhhEEEEEEEcCcCCC-HhHHHHHHHHHHc-----CCCEEEEEEchhcCCh
Confidence 32 4677888866553321 2344566666553 4799999999998743
No 73
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.22 E-value=1.7e-10 Score=109.89 Aligned_cols=116 Identities=13% Similarity=0.085 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.+|+++|++|||||||+|++++...... ..+..|.+.......+++ ..+.++||||.... . ..+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~---~~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ-YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF--------R---SLIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH--------H---HHHHH
Confidence 3799999999999999999998765442 223444455555455555 46899999995211 1 12233
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|.+++....-..-...+..+....+ ...|+++|.||+|+.
T Consensus 69 ~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~ 118 (161)
T cd01861 69 YI--RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLS 118 (161)
T ss_pred Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhcc
Confidence 33 356999999877643210011233333333322 147999999999986
No 74
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.21 E-value=2.8e-11 Score=131.94 Aligned_cols=140 Identities=20% Similarity=0.196 Sum_probs=99.1
Q ss_pred hhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHH------hcc----ccccccccch--hHHHHhhcchhHHHHHhh-
Q 004520 44 MMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLY------RLH----LATLIRAGES--DMKMVNLRSDRTRAIARE- 110 (747)
Q Consensus 44 ek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~------rl~----lad~~~~~~~--~~~~~~lg~~~~~~iA~~- 110 (747)
.++..+.|+.+||||+|||||.|++++++.+...+. |+. +++....+.. +..++.-.+......++.
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 446677899999999999999999999999988773 322 3443332211 111111111111111111
Q ss_pred ccc------------------------CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeE
Q 004520 111 QEA------------------------TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS 166 (747)
Q Consensus 111 ~~~------------------------~~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~ 166 (747)
... ........++++.|||.|||||||+||+|..+..+.+++.++.|+..+++..
T Consensus 217 ~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L- 295 (435)
T KOG2484|consen 217 MQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL- 295 (435)
T ss_pred cccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-
Confidence 100 1123457789999999999999999999999999999999999999998884
Q ss_pred EcCeEEEEEeCCCCCCcccc
Q 004520 167 VNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 167 ~~G~~v~LIDTPGl~~~~~~ 186 (747)
+..|.|+|.||+.-....
T Consensus 296 --dk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 296 --DKKIRLLDSPGIVPPSID 313 (435)
T ss_pred --cCCceeccCCceeecCCC
Confidence 688999999999877554
No 75
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.20 E-value=1.6e-10 Score=112.28 Aligned_cols=113 Identities=15% Similarity=0.050 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecC---------------CCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDA---------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 188 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~---------------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~ 188 (747)
+|+|+|.+|+|||||+|+|++........ ..+.|...........+..+.|+||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 58999999999999999999875543321 1233444444455566889999999997432
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 189 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 189 ~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.. ....++. .+|++++|++..... ...+...+..+.. ...|+++|+||+|+..
T Consensus 76 --~~----~~~~~~~--~~d~~i~v~d~~~~~-~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 76 --SS----EVIRGLS--VSDGAILVVDANEGV-QPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred --HH----HHHHHHH--hcCEEEEEEECCCCC-cHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 11 1222332 569999997764322 1233344444433 3589999999999985
No 76
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.19 E-value=2.1e-10 Score=109.85 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc---CeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~---G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.|+|+|.+|+|||||+|+|++..... ....++|........... +..+.++||||.... .... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~---~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF--------TNMR---AR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH--------HHHH---HH
Confidence 48999999999999999999765433 233455665544444443 779999999997321 1111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|++.+.... ......+..+.. ...|+++|+||+|+.
T Consensus 70 ~~--~~~d~il~v~d~~~~~~-~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 70 GA--SLTDIAILVVAADDGVM-PQTIEAIKLAKA-----ANVPFIVALNKIDKP 115 (168)
T ss_pred HH--hhcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence 22 25799999987654211 123334444433 257999999999975
No 77
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.18 E-value=2e-10 Score=107.13 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE--cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~--~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
+||+++|.+|||||||+|++++....... .+..+.+........ ....+.++||||.... . .....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~----~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY-KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF-------R----SITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc-CCceeeeeEEEEEEECCEEEEEEEEecCChHHH-------H----HHHHH
Confidence 58999999999999999999987655441 111111222222333 3467899999997321 1 12223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|++++....-.....++..+.... ....|+++|+||+|..
T Consensus 69 ~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 69 YY--RGAHGAILVYDITNRESFENLDKWLKELKEYA--PENIPIILVGNKIDLE 118 (159)
T ss_pred Hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEccccc
Confidence 33 35799999987654221001122333333331 1247999999999986
No 78
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.18 E-value=3e-10 Score=117.91 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+++|.||+|||||+|+|+|.. ..++.++.+|.++......+.+.++.++||||+.+.... .......+..++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~----~~~~~~~~l~~~- 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD----GKGRGRQVIAVA- 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCccccccc----chhHHHHHHHhh-
Confidence 68999999999999999999865 446677888888877777788999999999998654221 111222222233
Q ss_pred cCCCCEEEEEEecc
Q 004520 204 RSPPDIVLYFERLD 217 (747)
Q Consensus 204 ~~~~DvVL~V~~ld 217 (747)
..+|++++|++..
T Consensus 76 -~~ad~il~V~D~t 88 (233)
T cd01896 76 -RTADLILMVLDAT 88 (233)
T ss_pred -ccCCEEEEEecCC
Confidence 3578898887543
No 79
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.18 E-value=2.6e-10 Score=108.47 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCc-eeeEEEEEeEEc--CeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~~--G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+++|.+|||||||+|++++...... ..++ +.+......... ...+.++||||.... ..+ ..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~---~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY--------LEV---RN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHHH--------HHH---HH
Confidence 5899999999999999999998764331 1122 112222222333 357889999997321 111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC---cccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT---AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~---~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.+++....-..-...+..+.+.... ....|+++|.||+|+..
T Consensus 68 ~~~--~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 68 EFY--KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHh--ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 222 3579999997765432101122344445444332 13579999999999863
No 80
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.16 E-value=7.6e-10 Score=102.21 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.+||+++|.+|+|||||+|+|++.. +.....+.+|.+........++ ..+.++||||..+. ......
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~-- 69 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY--------RAIRRL-- 69 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc--------hHHHHH--
Confidence 3689999999999999999999987 6555555666666665566677 78899999995322 111111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCC--CcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGF--SDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~--~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+. ...+.++++.+....-.+. ........+..... . ..|+++|+||+|...
T Consensus 70 -~~--~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 70 -YY--RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-S-NVPIILVGNKIDLRD 122 (161)
T ss_pred -HH--hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-c-CCcEEEEEEcccCCc
Confidence 11 1234444443332220000 11123333333321 1 579999999999863
No 81
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.16 E-value=5.3e-10 Score=113.20 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC------CCceec---------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQ------TKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~------~~a~vs---------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
.++|+++|++|+|||||+++|++. ...... ...+.|.+.....++.++.++.|+||||..+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 479999999999999999999864 111100 1345666666666677889999999999732
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCccccc-EEEEEeccCCC
Q 004520 187 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 254 (747)
Q Consensus 187 ~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~-vIIVLTK~D~l 254 (747)
....+...+ ..+|++++|++.... ....+..++..+.+. ..| +|+++||+|+.
T Consensus 78 -------~~~~~~~~~--~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~-----~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 -------YIKNMITGA--AQMDGAILVVSATDG-PMPQTREHLLLARQV-----GVPYIVVFLNKADMV 131 (195)
T ss_pred -------HHHHHHHHh--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCcEEEEEeCCCCC
Confidence 222233333 357999999776532 123455666665553 355 78999999986
No 82
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.16 E-value=1.6e-10 Score=117.28 Aligned_cols=113 Identities=18% Similarity=0.113 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecC------------------------------CCCceeeEEEEEeEEcCeEEE
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNGIKVT 173 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~------------------------------~~~tT~~~~~~~~~~~G~~v~ 173 (747)
||+|+|++|+|||||+|+|+....+.++. ..+.|.+.....+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998755443310 145677777777778899999
Q ss_pred EEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCC
Q 004520 174 FIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSS 253 (747)
Q Consensus 174 LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~ 253 (747)
|+||||..+. .. .+...+ ..+|++|+|++..... ...+...+..+. .++ .+++|+|+||+|+
T Consensus 81 liDTpG~~~~-------~~----~~~~~~--~~ad~~llVvD~~~~~-~~~~~~~~~~~~-~~~---~~~iIvviNK~D~ 142 (208)
T cd04166 81 IADTPGHEQY-------TR----NMVTGA--STADLAILLVDARKGV-LEQTRRHSYILS-LLG---IRHVVVAVNKMDL 142 (208)
T ss_pred EEECCcHHHH-------HH----HHHHhh--hhCCEEEEEEECCCCc-cHhHHHHHHHHH-HcC---CCcEEEEEEchhc
Confidence 9999997321 11 122222 3579999997765321 112333333332 222 2467889999998
Q ss_pred C
Q 004520 254 T 254 (747)
Q Consensus 254 l 254 (747)
.
T Consensus 143 ~ 143 (208)
T cd04166 143 V 143 (208)
T ss_pred c
Confidence 6
No 83
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.16 E-value=2.3e-10 Score=109.77 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc---eecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKT---ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a---~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
+|+++|.+|+|||||+|.|++.... ........|.........+++..+.++||||.... .. ....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~---~~~~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL--------RS---LWDK 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh--------HH---HHHH
Confidence 5899999999999999999874321 11111123434333445567899999999997432 11 1122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|++..... ........+...+.. ....|+++|+||+|..
T Consensus 70 ~~--~~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 70 YY--AECHAIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred Hh--CCCCEEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 33 3679999997654321 112233333333321 1257999999999975
No 84
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.15 E-value=4.3e-10 Score=107.26 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=71.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|||||||+|++++... +....+++.........+.+ ..+.++||||..+. ... ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~---~~ 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF--------SAM---RE 68 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch--------hHH---HH
Confidence 47999999999999999999997643 23344555443333344555 46788999996432 111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.+++ ..|++++|.+++....-..-..++..+..... ....|+++|.||+|+..
T Consensus 69 ~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 69 QYMR--TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 2332 46899999776543210011122333333221 22579999999999863
No 85
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.14 E-value=1.2e-09 Score=109.04 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-Cceec--------------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchh
Q 004520 124 RILVLGKTGVGKSATINSIFDQT-KTETD--------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 188 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~-~a~vs--------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~ 188 (747)
+|+++|.+|||||||+|+|++.. .+... ...+.|...........+..+.|+||||..+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~----- 78 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF----- 78 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH-----
Confidence 79999999999999999998631 11110 01234444445555667889999999997432
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 189 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 189 ~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
......++ ..+|++++|++...... .....++..+.. ...|+++|+||+|+.
T Consensus 79 ------~~~~~~~~--~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 79 ------GGEVERVL--SMVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRP 130 (194)
T ss_pred ------HHHHHHHH--HhcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 11222333 25799999977653211 112223333322 257899999999986
No 86
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.13 E-value=6.9e-10 Score=107.69 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..++|+|+|.+|||||||+|++++......... ..+.+.........+ ..+.|+||||... .....
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 70 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSIT 70 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHH
Confidence 348999999999999999999998764443221 112232222333343 5789999999421 11112
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l~ 255 (747)
..++ ..+|++++|.++.... ....+..++.+... .....|+|+|.||+|+..
T Consensus 71 ~~~~--~~~d~il~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 71 RSYY--RGAAGALLVYDITRRE---TFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 3333 3579999998765322 11223333322211 112479999999999874
No 87
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.13 E-value=5.5e-10 Score=106.60 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
++|+++|.+|||||||+|++++...... .+..+.+.....+........+.|+||||.... ......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 69 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTSSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHH
Confidence 5899999999999999999998754332 222222222222222212357899999996321 1111223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+ ..+|++++|.+++....-..-..++..+.+.. .....|+++|.||+|+.
T Consensus 70 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 70 Y--RGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKE 119 (161)
T ss_pred h--CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCccc
Confidence 3 35799999977654321001112333343332 23357899999999987
No 88
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.12 E-value=1e-09 Score=104.43 Aligned_cols=116 Identities=21% Similarity=0.184 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
+||+++|.+|+|||||+|++++...... ..+..+.+.......+.+ ..+.++||||.... . .....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~---~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ-YKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF--------R---SITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------H---HHHHH
Confidence 5899999999999999999998754221 112223333333445555 47889999995211 1 12223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|.++..... ..+ ..++..+....+ -..|+++|.||+|+..
T Consensus 69 ~~--~~~d~~ilv~d~~~~~s-~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 69 YY--RGAVGALLVYDITNRES-FENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred Hh--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 33 35799999977654321 111 122333333211 2579999999999764
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.12 E-value=6.8e-10 Score=105.97 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.++|+++|++|||||||+|++++.+.... ....+.+.....+.....+..+.++||||-... ... ...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~--------~~~---~~~ 69 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY--------RSL---APM 69 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH--------HHH---HHH
Confidence 37899999999999999999998765441 111111111222222223457889999995211 111 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|++++....-.....++..+..... ...|+++|.||+|+..
T Consensus 70 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 70 YY--RGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 23 357999999876533210112234444444321 2478999999999763
No 90
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.11 E-value=9.6e-11 Score=116.85 Aligned_cols=133 Identities=14% Similarity=0.008 Sum_probs=78.6
Q ss_pred hhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc------ccccccccchh--H-HHH------hhcc--hhHHH
Q 004520 44 MMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAGESD--M-KMV------NLRS--DRTRA 106 (747)
Q Consensus 44 ek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~------lad~~~~~~~~--~-~~~------~lg~--~~~~~ 106 (747)
...+.+.++.+|++++++|++.+....+..+........ |+|........ . .+. ..++ .....
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVIL 104 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEE
Confidence 345556789999999999999876665555522221111 55543221111 0 111 0000 01111
Q ss_pred HHhhcccCCC--------CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCC--------ceecCCCCceeeEEEEEeEEcCe
Q 004520 107 IAREQEATGI--------PDLDFSIRILVLGKTGVGKSATINSIFDQTK--------TETDAFQPATDCIREVKGSVNGI 170 (747)
Q Consensus 107 iA~~~~~~~~--------~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~--------a~vs~~~~tT~~~~~~~~~~~G~ 170 (747)
+++... .+. .......+++++|.||||||||||+|++... ..++..+++|++.+.+... .
T Consensus 105 vSA~~~-~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~ 180 (190)
T cd01855 105 ISAKKG-WGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---N 180 (190)
T ss_pred EECCCC-CCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---C
Confidence 111111 111 1112346899999999999999999998643 3456778899998887753 2
Q ss_pred EEEEEeCCCC
Q 004520 171 KVTFIDTPGF 180 (747)
Q Consensus 171 ~v~LIDTPGl 180 (747)
.+.||||||+
T Consensus 181 ~~~~~DtPG~ 190 (190)
T cd01855 181 GKKLYDTPGI 190 (190)
T ss_pred CCEEEeCcCC
Confidence 5799999997
No 91
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.11 E-value=7.2e-10 Score=112.07 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+|+|.+|||||||+|.+++.+.... ..+++. +.......++| ..+.|+||||....... ...+......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~~ 75 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPRF 75 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHHH
Confidence 4899999999999999999998654322 334443 33333345566 46789999998643111 1112111111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l 254 (747)
..+ ..+|++++|.++.....-..-..+.+.+.+... .....|+|+|.||+|+.
T Consensus 76 ~~~--~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 76 RGL--RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred hhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 223 468999999877543210001123333333321 12357999999999986
No 92
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.11 E-value=8.9e-10 Score=104.24 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|++++..... ...+++.........+++. .+.++||||.... ..+ ...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~l---~~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAM---RDQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCCcch--------HHH---HHH
Confidence 689999999999999999999865322 2334444333333445554 4678999996322 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~-~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+++ ..|++++|.+++.... ..+. ..+..+.+.. .....|+++|.||+|+..
T Consensus 69 ~~~--~~~~~i~v~~~~~~~s-~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 69 YMR--TGEGFLCVFAINSRKS-FEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHh--cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 332 4688888877654221 1111 2233333322 123579999999999863
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.10 E-value=1.3e-09 Score=106.18 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
...++|+++|.+|||||||+|++++.....+ .+ |.........+++..+.++||||.... .. ...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~---~~-t~g~~~~~~~~~~~~l~l~D~~G~~~~--------~~---~~~ 76 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTI---SP-TLGFQIKTLEYEGYKLNIWDVGGQKTL--------RP---YWR 76 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCc---CC-ccccceEEEEECCEEEEEEECCCCHHH--------HH---HHH
Confidence 4568999999999999999999998743322 22 222222334456889999999996321 11 122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
.++ ..+|++++|++.+.... .......+...+.. ....|+++|+||+|+.
T Consensus 77 ~~~--~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 77 NYF--ESTDALIWVVDSSDRLR---LDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred HHh--CCCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 233 35799999977654321 11223333333321 1358999999999986
No 94
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.10 E-value=8.1e-10 Score=106.75 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeE--EEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCI--REVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~--~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|++++...... ..+++... ...........+.++||||.... ..... .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~---~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCSKNICTLQITDTTGSHQF--------PAMQR---L 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCcchheEEEEEEECCEEEEEEEEECCCCCcc--------hHHHH---H
Confidence 6899999999999999999998653221 11222111 11222223457889999997532 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc-ccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~-i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|.+++....-.....+++.+.+..+.. ...|+++|.||+|+..
T Consensus 69 ~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SI--SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred Hh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 22 35689999977764321011233445555554432 3579999999999863
No 95
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.10 E-value=1.4e-09 Score=107.89 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
..++|+++|.+|||||||+|.+.+.....+. .|.........+++.++.++||||.... ...+ ..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~---~~ 80 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQA--------RRLW---KD 80 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHH--------HHHH---HH
Confidence 4589999999999999999999987543321 2333333444557889999999997422 1111 22
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
++ ..+|+++||++...... -......+.+.+.. ....|+++|+||+|+.
T Consensus 81 ~~--~~ad~ii~vvD~~~~~~---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 81 YF--PEVNGIVYLVDAYDKER---FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred Hh--CCCCEEEEEEECCcHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 33 36799999976643211 11222233333321 1257999999999974
No 96
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.09 E-value=1.9e-09 Score=103.76 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=71.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|+|||||+|++.+........ +..+.+.......+++ ..+.|+||||... .. ....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~---~~~~ 70 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQER--------FR---TITQ 70 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHH--------HH---HHHH
Confidence 4799999999999999999998754332211 1111223333344455 4789999999521 11 1122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|++++....-......+..+.... ....|+++|.||+|+..
T Consensus 71 ~~~--~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 71 SYY--RSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHh--ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 233 35799999987764321011223444444321 22578999999999864
No 97
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.09 E-value=7.7e-10 Score=110.25 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC------CceecCCCCceeeEEEEEeEEc--------------CeEEEEEeCCCCCC
Q 004520 123 IRILVLGKTGVGKSATINSIFDQT------KTETDAFQPATDCIREVKGSVN--------------GIKVTFIDTPGFLP 182 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~------~a~vs~~~~tT~~~~~~~~~~~--------------G~~v~LIDTPGl~~ 182 (747)
++|+++|.+|+|||||+|+|++.. .......+++|.+.......+. +..+.++||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999742 1111223355665544444443 67899999999731
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
....+.... ..+|++++|++...... ..+...+.. .... ..|+++|+||+|+..
T Consensus 81 -----------~~~~~~~~~--~~~d~vi~VvD~~~~~~-~~~~~~~~~-~~~~----~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 -----------LIRTIIGGA--QIIDLMLLVVDATKGIQ-TQTAECLVI-GEIL----CKKLIVVLNKIDLIP 134 (192)
T ss_pred -----------HHHHHHHHH--hhCCEEEEEEECCCCcc-HHHHHHHHH-HHHc----CCCEEEEEECcccCC
Confidence 112222222 24689999976543211 122222322 2222 469999999999863
No 98
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.08 E-value=2.2e-09 Score=103.00 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=70.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|||||||+|++++....... .+..+.+.........+ ..+.++||||.... .. ...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~---~~~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY--------RA---ITS 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHH--------HH---HHH
Confidence 479999999999999999999987643322 23333344444444455 36889999996321 11 112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..++++++|.++..... ..+ ..++..+.+.. ....|+++|.||+|+..
T Consensus 71 ~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~--~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 71 AYY--RGAVGALLVYDITKKQT-FENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHH--CCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence 233 25688888877653221 111 12333333321 12479999999999763
No 99
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.08 E-value=2e-09 Score=101.82 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+++|.+|||||||+|++++...... ..+++ ...........+ ..+.++||||.... ... ..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~---~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HAL---GP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HHh---hH
Confidence 4899999999999999999998765432 12222 223222333334 46889999995211 111 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.+++.... ..+ ..+++.+...... ..|+++|+||+|+..
T Consensus 68 ~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 68 IYY--RDADGAILVYDITDADS-FQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred HHh--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 122 35799999977653321 011 1233344443322 579999999999863
No 100
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.08 E-value=2.8e-09 Score=102.56 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|||||||+|++++..... ...+..+.+.........+ ..+.++||||.... . ....
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~---~~~~ 69 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF--------R---TITS 69 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH--------H---HHHH
Confidence 3799999999999999999999865432 2122223333333344454 46789999995311 1 1122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.+++....-..-..++..+.+.. ....|+++|.||+|+..
T Consensus 70 ~~~--~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 70 SYY--RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHh--CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhccc
Confidence 233 35799999977654221000112233333221 12479999999999753
No 101
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.07 E-value=1.2e-09 Score=104.38 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
+||+|+|.+|||||||+|++++........ +..+.+........++ ..+.|+||||.... . .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~---~~~~~ 68 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ-HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF--------R---SVTRS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCEEEEEEEEECcchHHH--------H---HhHHH
Confidence 589999999999999999999765433211 1222223333333444 46789999996321 1 11223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|.+++....-..-..++..+.... ....|+++|.||+|+..
T Consensus 69 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 69 YY--RGAAGALLVYDITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLAD 119 (161)
T ss_pred Hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcch
Confidence 33 35799999987764321001112333333322 23578999999999864
No 102
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.07 E-value=1.2e-09 Score=104.04 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|++.+.... ....+++.+........++. .+.|+||||.... .... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF--------TAMR---DL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc--------chHH---HH
Confidence 68999999999999999999976532 22345554433333445554 5678999997432 1111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|.+++....-..-..+++.+.+... ....|+|+|.||+|+..
T Consensus 69 ~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 69 YI--KNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred Hh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22 256999999776543210011223334443322 23579999999999763
No 103
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.07 E-value=3.1e-10 Score=109.78 Aligned_cols=112 Identities=23% Similarity=0.305 Sum_probs=68.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEe---------------------------------------
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG--------------------------------------- 165 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~--------------------------------------- 165 (747)
|+|+|..++|||||||+|+|.+...++.. ++|..+..+..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 78999999999999999999876665443 44443322210
Q ss_pred -----------------EEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHH
Q 004520 166 -----------------SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPL 228 (747)
Q Consensus 166 -----------------~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~l 228 (747)
......+.||||||+.+.... .. ..+.+++ ...|++|||.+....-. ..+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~----~~---~~~~~~~--~~~d~vi~V~~~~~~~~-~~~~~~ 149 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE----HT---EITEEYL--PKADVVIFVVDANQDLT-ESDMEF 149 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT----TS---HHHHHHH--STTEEEEEEEETTSTGG-GHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhh----hH---HHHHHhh--ccCCEEEEEeccCcccc-hHHHHH
Confidence 001235899999999764221 11 3444555 46799999987665321 123333
Q ss_pred HHHHHHHhCCcccccEEEEEecc
Q 004520 229 LKLMTEVFGTAIWFNTILVMTHS 251 (747)
Q Consensus 229 Lk~L~e~fG~~i~k~vIIVLTK~ 251 (747)
+....+. ....+|+|+||+
T Consensus 150 l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 150 LKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHTT----TCSSEEEEEE-G
T ss_pred HHHHhcC----CCCeEEEEEcCC
Confidence 3333332 235699999985
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.07 E-value=1.2e-09 Score=103.12 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
+|+++|++|||||||+|++++.. ......+++.+.........+ ..+.++||||.... . .....+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~---~~~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF--------S---AMRDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------H---HHHHHH
Confidence 58999999999999999999876 233445555555554455553 56889999996431 1 111223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..|++++|.+++....-..-..+...+....+ ....|+++|+||+|...
T Consensus 68 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 68 IR--QGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred Hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence 32 46999999776543210011223333333322 13589999999999874
No 105
>PLN03118 Rab family protein; Provisional
Probab=99.07 E-value=1.3e-09 Score=110.32 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..++|+|+|.+|||||||+|++++....... +++ .+.......+++ ..+.|+||||.... ...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~--- 78 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA---PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF--------RTL--- 78 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC---CCceeEEEEEEEEECCEEEEEEEEECCCchhh--------HHH---
Confidence 4689999999999999999999987643222 222 222222333444 47899999996432 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~-~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
...++ ..+|++++|.+++.... ..+. .....+...+......|+++|.||+|+..
T Consensus 79 ~~~~~--~~~d~~vlv~D~~~~~s-f~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 79 TSSYY--RNAQGIILVYDVTRRET-FTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHH--hcCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 12233 25699999977654321 1111 11111222222223468999999999863
No 106
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.07 E-value=3.4e-09 Score=101.46 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEE---cCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~---~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
++|+++|.+|||||||+|++.+....-...+.+++. ++....... ...++.++||||... .... .
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~---~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL--------YSDM---V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH--------HHHH---H
Confidence 589999999999999999998642111222333332 222222222 236899999999521 1111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..++ ..+|++++|.+++....-..-..+++.+... ....|+|+|.||+|+..
T Consensus 70 ~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 70 SNYW--ESPSVFILVYDVSNKASFENCSRWVNKVRTA---SKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccc
Confidence 2334 3679999998765432100112233333332 23579999999999863
No 107
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.07 E-value=1.1e-09 Score=104.13 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+++|.+|||||||+|++.+..... ..+.++ ...........+..+.++||||.... ... ...++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~-~~~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~---~~~~~- 66 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS-QIIVPT-VGFNVESFEKGNLSFTAFDMSGQGKY--------RGL---WEHYY- 66 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc-ceecCc-cccceEEEEECCEEEEEEECCCCHhh--------HHH---HHHHH-
Confidence 58999999999999999999864321 111121 11212223456789999999997422 111 12233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l 254 (747)
..+|++++|++......-......+..+.+... .....|+++|+||+|+.
T Consensus 67 -~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 67 -KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred -ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 357999999766532210000112222222111 12358999999999985
No 108
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.06 E-value=2.1e-09 Score=102.44 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=67.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
+|+++|.+|||||||+|++++.......+ |.......... ....+.++||||.... ... ...++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~---~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIP----TVGFNVEMLQLEKHLSLTVWDVGGQEKM--------RTV---WKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccC----ccCcceEEEEeCCceEEEEEECCCCHhH--------HHH---HHHHh
Confidence 58999999999999999999876543321 22111111222 3468999999997321 111 12233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
..+|++++|++..... .-......+.+.+... ...|+++|+||+|+.
T Consensus 66 --~~~~~iv~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 66 --ENTDGLVYVVDSSDEA---RLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred --ccCCEEEEEEECCcHH---HHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 3569999997664322 1112233333333211 258999999999985
No 109
>COG2262 HflX GTPases [General function prediction only]
Probab=99.06 E-value=6.9e-10 Score=122.12 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.-..|+++|.||+|||||+|+|+|.....-+. -..|-++......+ +|+++.|-||-||... ....+..+++
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~-LFATLdpttR~~~l~~g~~vlLtDTVGFI~~------LP~~LV~AFk 263 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQ-LFATLDPTTRRIELGDGRKVLLTDTVGFIRD------LPHPLVEAFK 263 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecccc-ccccccCceeEEEeCCCceEEEecCccCccc------CChHHHHHHH
Confidence 44689999999999999999999876554332 23444443333333 3799999999999753 3456666776
Q ss_pred HHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 200 KFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 200 ~~I~~~-~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
..+... .+|++|+|++.+.......-....+.|.+ .|.. ..|+|+|+||+|++.+.
T Consensus 264 sTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~-~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 264 STLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAE-IGAD-EIPIILVLNKIDLLEDE 320 (411)
T ss_pred HHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCC-CCCEEEEEecccccCch
Confidence 666543 68999999776554321111223333333 3322 38999999999988654
No 110
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.05 E-value=2.5e-09 Score=102.48 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=67.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
||+++|.+|||||||+|++........ .+ |...........+..+.++||||.... ... ...++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~---~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~---~~~~~- 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT---IP-TIGFNVETVTYKNLKFQVWDLGGQTSI--------RPY---WRCYY- 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc---CC-ccCcCeEEEEECCEEEEEEECCCCHHH--------HHH---HHHHh-
Confidence 589999999999999999976554321 12 222222233456789999999997421 111 12233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
..+|++++|++.+.... -....+.+...+.. ....|+++|+||+|+.
T Consensus 65 -~~~~~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 65 -SNTDAIIYVVDSTDRDR---LGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred -cCCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 35799999977654321 01112223322221 1257999999999985
No 111
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.05 E-value=2.5e-09 Score=102.71 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+|+|.+|||||||+|++++....... .+..+.+.......+.+. .+.++||||.... .. ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~---~~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVTVDDKLVTLQIWDTAGQERF--------QS---LGVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc-CCccceEEEEEEEEECCEEEEEEEEeCCChHHH--------Hh---HHHH
Confidence 58999999999999999999987533221 111122332223344443 5679999996321 11 1122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCC--cccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|.+++.... ... ..+...+...... ....|+++|+||+|+..
T Consensus 69 ~~--~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 69 FY--RGADCCVLVYDVTNPKS-FESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred Hh--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 33 35799999977653321 011 1122222222221 12579999999999975
No 112
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.05 E-value=4.9e-10 Score=108.03 Aligned_cols=128 Identities=19% Similarity=0.095 Sum_probs=79.2
Q ss_pred hhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc--------ccccccccch-hH-HHHh-hcchhHHHHHhhcccC---
Q 004520 49 VKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGES-DM-KMVN-LRSDRTRAIAREQEAT--- 114 (747)
Q Consensus 49 ~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~--------lad~~~~~~~-~~-~~~~-lg~~~~~~iA~~~~~~--- 114 (747)
..++.+|++++++|++.+.+..+..+.+++...+ |+|....... .. .+.. .+. ....+++.....
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~gi~~ 86 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGI-PVVYVSAKERLGTKI 86 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCC-cEEEEEccccccHHH
Confidence 4455699999999999998888877777665333 4543321110 00 0000 000 000111111000
Q ss_pred -------CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 115 -------GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 115 -------~~~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
-.+......+++++|.+|+||||++|++.+.....+++..++|+..+.+.. +..+.|+||||+
T Consensus 87 L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 87 LRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred HHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 011223467899999999999999999999887777777787776654432 347899999996
No 113
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.05 E-value=2.3e-09 Score=103.83 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
.+||+++|.+|||||||+|++.+...... +.+++ .+.........+ ..+.|+||||.... ... .
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~~~---~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF--------RTI---T 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEECCEEEEEEEEeCCchHHH--------HHH---H
Confidence 58999999999999999999997653221 11221 222222233444 46789999995321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..++ ..+|++++|.+++.... ..+ ..++..+.... ....|+++|.||+|+..
T Consensus 70 ~~~~--~~ad~~i~v~d~~~~~s-~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 70 TAYY--RGAMGIILVYDITDEKS-FENIRNWMRNIEEHA--SEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHh--CCCCEEEEEEECcCHHH-HHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 2233 35799999987653221 111 12333333321 23579999999999873
No 114
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.05 E-value=9.5e-10 Score=109.53 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=77.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcee-----------------cCCCCceeeEEEEEeE--EcCeEEEEEeCCCCCC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTET-----------------DAFQPATDCIREVKGS--VNGIKVTFIDTPGFLP 182 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~v-----------------s~~~~tT~~~~~~~~~--~~G~~v~LIDTPGl~~ 182 (747)
-++|+++|..++|||||+++|++...... ....+.|......... ..++.+.||||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 47899999999999999999986432211 1123456666666666 7899999999999632
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
....+.+.+ ..+|++++|++.... ........++.+... ..|+|||+||+|..
T Consensus 83 -----------f~~~~~~~~--~~~D~ailvVda~~g-~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 83 -----------FIKEMIRGL--RQADIAILVVDANDG-IQPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp -----------HHHHHHHHH--TTSSEEEEEEETTTB-STHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred -----------eeeccccee--cccccceeeeecccc-ccccccccccccccc-----ccceEEeeeeccch
Confidence 223333334 367999999876532 112344555555543 57899999999987
No 115
>CHL00071 tufA elongation factor Tu
Probab=99.05 E-value=2.1e-09 Score=120.43 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=78.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcee-------c--------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCc
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-------D--------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 183 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v-------s--------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~ 183 (747)
....++|+++|++++|||||+|+|++...... . ...+.|.+.....+..++.++.|+||||..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-- 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH--
Confidence 34569999999999999999999997522110 1 124566666666666678899999999953
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCccccc-EEEEEeccCCCC
Q 004520 184 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 255 (747)
Q Consensus 184 ~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~-vIIVLTK~D~l~ 255 (747)
.....+.+.+ ..+|++++|++.... ....+...+..+... ..| +|+++||+|+..
T Consensus 87 ---------~~~~~~~~~~--~~~D~~ilVvda~~g-~~~qt~~~~~~~~~~-----g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 ---------DYVKNMITGA--AQMDGAILVVSAADG-PMPQTKEHILLAKQV-----GVPNIVVFLNKEDQVD 142 (409)
T ss_pred ---------HHHHHHHHHH--HhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCEEEEEEEccCCCC
Confidence 1222222333 357999999776532 112455666655443 456 778999999863
No 116
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.05 E-value=2.1e-09 Score=103.20 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
+++|+++|.+|||||||+|+++.... .....+++..........++. .+.++||||.... ..+...
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~-- 68 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF--------TAMRDL-- 68 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccc--------hhHHHH--
Confidence 36899999999999999999986432 223445555444444555554 4568999997432 111111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+. ..+|++++|.+.+....-..-..++..+.+... ....|+++|.||+|+..
T Consensus 69 -~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 69 -YM--KNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred -HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 22 246899999776543210011223344433221 23579999999999863
No 117
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.04 E-value=1.9e-09 Score=104.85 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=66.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcee-----cC---------CCCceeeEEEEEeEE-----cCeEEEEEeCCCCCCcc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTET-----DA---------FQPATDCIREVKGSV-----NGIKVTFIDTPGFLPSC 184 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~v-----s~---------~~~tT~~~~~~~~~~-----~G~~v~LIDTPGl~~~~ 184 (747)
+|+++|.+|||||||+|++++...+.. .. ..+.|.........+ .+..+.|+||||..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 689999999999999999987432110 00 112333333332222 3567889999998532
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 185 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 185 ~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
. .....++. .+|++++|++..... ...+...+..+.. ...|+++|+||+|+.
T Consensus 81 ------~----~~~~~~~~--~ad~~i~v~D~~~~~-~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 81 ------S----YEVSRSLA--ACEGALLLVDATQGV-EAQTLANFYLALE-----NNLEIIPVINKIDLP 132 (179)
T ss_pred ------H----HHHHHHHH--hcCeEEEEEECCCCc-cHhhHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 1 12223332 479999997765321 1123333332222 247899999999974
No 118
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.04 E-value=1.1e-09 Score=127.93 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=80.5
Q ss_pred cCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCC
Q 004520 129 GKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPD 208 (747)
Q Consensus 129 Gk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~D 208 (747)
|.||||||||+|+++|.. ..+++.+++|.+.......+++.++.++||||..+-... ...+.+ .+.++....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~--s~~e~v---~~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF--SLEEEV---ARDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCcc--chHHHH---HHHHHhhcCCC
Confidence 899999999999999975 577888899998888888888999999999999764221 112222 22344445789
Q ss_pred EEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 209 IVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 209 vVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++++|++.+... .+......+.+ ...|+++|+||+|+..
T Consensus 75 vvI~VvDat~le---r~l~l~~ql~~-----~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDASNLE---RNLYLTLQLLE-----LGIPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCCcch---hhHHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence 999997665432 12233333333 2589999999999863
No 119
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.04 E-value=2.2e-09 Score=100.33 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=67.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhc
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 204 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~ 204 (747)
|+++|++|||||||+|+|.+.+.... .. + |..........++..+.++||||.... . .....++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-~~-~-t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~---~~~~~~~-- 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-TI-P-TVGFNMRKVTKGNVTLKVWDLGGQPRF--------R---SMWERYC-- 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-cc-C-CCCcceEEEEECCEEEEEEECCCCHhH--------H---HHHHHHH--
Confidence 79999999999999999998754322 11 2 222222233456788999999996321 1 1122333
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 205 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 205 ~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
..+|++++|+++..... -......+...... ....|+++|+||+|..
T Consensus 66 ~~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 66 RGVNAIVYVVDAADRTA---LEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred hcCCEEEEEEECCCHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 35699999976653221 11122233332211 1257999999999976
No 120
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.04 E-value=1.2e-09 Score=104.90 Aligned_cols=117 Identities=19% Similarity=0.109 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc--CeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|+|++...... ..+++........... ...+.++||||...... ... .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~--------~~~---~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE--YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR--------LRP---L 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------cch---h
Confidence 5899999999999999999998765211 1222222222223333 34689999999754211 000 1
Q ss_pred HHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t-~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
++ ..+|++++|.+.+... .......++..+.... ...|+++|+||+|+..+.
T Consensus 68 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 68 SY--PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDE 120 (171)
T ss_pred hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhch
Confidence 11 3579999998765422 1001112333333322 258999999999987544
No 121
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.04 E-value=1.6e-09 Score=103.68 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+|+|.+|||||||+|++++..... ...+++.+........++ ..+.++||||.... ... ...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~---~~~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF--------SAM---RDQ 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccc--------hHH---HHH
Confidence 489999999999999999999865332 233444444334444455 46778999997432 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+++ ..|++++|.+++....-..-......+.+... ....|+++|.||+|+..
T Consensus 68 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 68 YMR--TGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 332 46898888766542210001122333333322 12579999999999863
No 122
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.04 E-value=3.9e-10 Score=121.51 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=105.0
Q ss_pred ccccccccchhHHHHhhcchhHHHHHhhcccCCCCCCCCCe----EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee
Q 004520 83 LATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSI----RILVLGKTGVGKSATINSIFDQTKTETDAFQPATD 158 (747)
Q Consensus 83 lad~~~~~~~~~~~~~lg~~~~~~iA~~~~~~~~~~~~~~l----rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~ 158 (747)
++.+.+.+....+|.+ +...+...|..-+........-+| -|.+||-||+|||||||++.. .+.++.+++.||-
T Consensus 117 ~akGG~GG~GN~~Fks-~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~-AkPKIadYpFTTL 194 (369)
T COG0536 117 VAKGGRGGLGNAHFKS-SVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSA-AKPKIADYPFTTL 194 (369)
T ss_pred EEcCCCCCccchhhcC-cccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhh-cCCcccCCccccc
Confidence 5666666666666665 334444333221111111111222 467999999999999999996 5677888988998
Q ss_pred eEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC--CCcHHHHHHHHHH
Q 004520 159 CIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG--FSDFPLLKLMTEV 235 (747)
Q Consensus 159 ~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~--~~D~~lLk~L~e~ 235 (747)
.+....... .+..+++-|.||+.+....+.-...+.++.|.+| .++++|++++..... ..+..++..=.+.
T Consensus 195 ~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt------~vL~hviD~s~~~~~dp~~~~~~i~~EL~~ 268 (369)
T COG0536 195 VPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT------RVLLHVIDLSPIDGRDPIEDYQTIRNELEK 268 (369)
T ss_pred cCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh------heeEEEEecCcccCCCHHHHHHHHHHHHHH
Confidence 877665554 5667999999999988665544555555555543 688999877654321 1233322222222
Q ss_pred hCCc-ccccEEEEEeccCCCCC
Q 004520 236 FGTA-IWFNTILVMTHSSSTLP 256 (747)
Q Consensus 236 fG~~-i~k~vIIVLTK~D~l~p 256 (747)
+... ..+|.+||+||+|...+
T Consensus 269 Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 269 YSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred hhHHhccCceEEEEeccCCCcC
Confidence 3332 36899999999997643
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.03 E-value=2e-09 Score=102.51 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=69.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+++|.+|||||||+|++++....... .|.........+.+..+.++||||.... ... ...++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~---~~~~~- 64 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTI----PTIGFNVETVEYKNVSFTVWDVGGQDKI--------RPL---WKHYY- 64 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCcCcceEEEEECCEEEEEEECCCChhh--------HHH---HHHHh-
Confidence 5899999999999999999998632221 1222222334456789999999997432 111 12233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l~ 255 (747)
..+|++++|+++..... -......+...+.. ....|+++|+||+|...
T Consensus 65 -~~~~~~i~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 65 -ENTNGIIFVVDSSDRER---IEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred -ccCCEEEEEEECCCHHH---HHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 25699999977654310 11122233332221 23579999999999864
No 124
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.03 E-value=2.2e-09 Score=114.02 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=75.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----ceec------------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK-----TETD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~-----a~vs------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
+|+++|++|+|||||+|+|+.... ..+. ...+.|.+.....+.+.+.++.||||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 589999999999999999973211 1111 12245666666777889999999999997532
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 187 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 187 ~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.....++++ .+|++++|++.... ....+..+++.+.+. .+|+++++||+|..
T Consensus 78 --------~~~~~~~l~--~aD~ailVVDa~~g-~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~ 129 (270)
T cd01886 78 --------TIEVERSLR--VLDGAVAVFDAVAG-VEPQTETVWRQADRY-----NVPRIAFVNKMDRT 129 (270)
T ss_pred --------HHHHHHHHH--HcCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 122333443 45899999765432 112345566655543 57999999999976
No 125
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.03 E-value=1.9e-09 Score=104.04 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+++|.+|||||||++++++....... .++. ..........++ ..+.++||||.... . ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~---~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--LSTYALTLYKHNAKFEGKTILVDFWDTAGQERF--------Q---TMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCceeeEEEEEEEEECCEEEEEEEEeCCCchhh--------h---hhhH
Confidence 58999999999999999999875432221 1111 122222233344 46789999996321 1 1122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.++ ..+|++++|++++....-.....++..+.+.. ...|+++|+||+|+.
T Consensus 68 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 68 SYY--HKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred HHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 233 35799999987653221001123444444321 257999999999974
No 126
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.03 E-value=6.5e-10 Score=124.54 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=95.8
Q ss_pred hhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc----------ccccccccch--hHHHHh-----hcchhHHH
Q 004520 44 MMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH----------LATLIRAGES--DMKMVN-----LRSDRTRA 106 (747)
Q Consensus 44 ek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~----------lad~~~~~~~--~~~~~~-----lg~~~~~~ 106 (747)
.+|+=+.++.+|||++++|||.++--+.+.+.++..... |+|.+..... +.+++. +.|=.+..
T Consensus 165 WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 165 WRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccc
Confidence 556677899999999999999999999988888876433 5555443322 111110 00000000
Q ss_pred HHhh--------ccc--------CC--------------------------------C------CCCCCCeEEEEEcCCC
Q 004520 107 IARE--------QEA--------TG--------------------------------I------PDLDFSIRILVLGKTG 132 (747)
Q Consensus 107 iA~~--------~~~--------~~--------------------------------~------~~~~~~lrIlVVGk~G 132 (747)
.++. +.. .+ . +.-...++|.+||.||
T Consensus 245 at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPN 324 (562)
T KOG1424|consen 245 ATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPN 324 (562)
T ss_pred ccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCC
Confidence 0000 000 00 0 0011138999999999
Q ss_pred CcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 133 VGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 133 vGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
|||||+||+|.|.++..|+..+|-|+..+.+..+ ..+.|.|+||+.-+++.
T Consensus 325 VGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 325 VGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred CchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCCC
Confidence 9999999999999999999999999999998864 56799999999887654
No 127
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.03 E-value=2.6e-09 Score=103.20 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=67.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+++|.+|||||||+|++.+...... +.+++. +.........+ ..+.++||||.... .... .
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~--------~~~~---~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY--------RTIT---T 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------HHHH---H
Confidence 6899999999999999999998654322 222221 22222222333 57899999996321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.++.....-..-...++.+.+.. .-..|+++|.||+|+..
T Consensus 69 ~~~--~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 69 AYY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMED 120 (165)
T ss_pred HHc--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCc
Confidence 222 36799999977653321001112333333221 12468999999999863
No 128
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.03 E-value=2.7e-09 Score=119.72 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=80.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceec------------------------------CCCCceeeEEEEEeEEcC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETD------------------------------AFQPATDCIREVKGSVNG 169 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs------------------------------~~~~tT~~~~~~~~~~~G 169 (747)
...++|+++|++|+|||||+|+|+........ ...++|.+.....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45689999999999999999999854433221 146788888888888889
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhCCcccccEEEEE
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVM 248 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~-t~~~~D~~lLk~L~e~fG~~i~k~vIIVL 248 (747)
.++.|+||||..+. ... +...+ ..+|++++|++.... .....+...+..+. .++ ..++++|+
T Consensus 84 ~~i~liDtpG~~~~-------~~~----~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~---~~~iivvi 146 (425)
T PRK12317 84 YYFTIVDCPGHRDF-------VKN----MITGA--SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG---INQLIVAI 146 (425)
T ss_pred eEEEEEECCCcccc-------hhh----Hhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC---CCeEEEEE
Confidence 99999999996422 111 11112 357999999876531 12123444444443 333 24689999
Q ss_pred eccCCC
Q 004520 249 THSSST 254 (747)
Q Consensus 249 TK~D~l 254 (747)
||+|+.
T Consensus 147 NK~Dl~ 152 (425)
T PRK12317 147 NKMDAV 152 (425)
T ss_pred Eccccc
Confidence 999986
No 129
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.03 E-value=2.6e-09 Score=105.83 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE---cCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~---~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
.++|+++|.+|||||||+|++.+...... .+..+.........+ .+..+.++||||.... ...+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~--- 69 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT--VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL--------RPLW--- 69 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc--CCccccceeEEEeeccCCCceEEEEEECCCcHhH--------HHHH---
Confidence 58999999999999999999987654322 111111222222222 4578999999996311 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..++ ..+|++++|++...... ..+ ...+..+.+... ...+|+++|+||+|+.
T Consensus 70 ~~~~--~~~d~ii~v~D~~~~~~-~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 70 KSYT--RCTDGIVFVVDSVDVER-MEEAKTELHKITRFSE-NQGVPVLVLANKQDLP 122 (183)
T ss_pred HHHh--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence 2233 35799999977654321 011 112222322211 2358999999999975
No 130
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.02 E-value=4.1e-09 Score=104.36 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEE-EEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR-EVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~-~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
+||+|+|.+|||||||+|++++... ..+.+.+++.... .....++|. .+.++||||.... ..+. .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~---~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY--------EAMS---R 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh--------hhhh---H
Confidence 5899999999999999999998543 3333334333222 223445554 4569999996322 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.+++....-.....+++.+... ....|+++|.||+|+..
T Consensus 69 ~~~--~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 69 IYY--RGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 122 3679999998765432100111233333332 22579999999999864
No 131
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.02 E-value=4.9e-09 Score=99.93 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCc-eeeEEEEEeEEc----CeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVN----GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~~----G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
++|+++|.+|+|||||+|++++..... ...++ +.+.......+. +..+.|+||||.... ...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~--- 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF--------DAI--- 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH--------HHh---
Confidence 489999999999999999999864322 12222 223322223333 467899999995211 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
...++ ..+|++++|.+++.... ... ..++..+.... ...|+++|.||+|+..
T Consensus 68 ~~~~~--~~~~~~v~v~d~~~~~s-~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 68 TKAYY--RGAQACILVFSTTDRES-FEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHHh--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence 12233 36799999977654321 111 12222232221 2579999999999874
No 132
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.02 E-value=5.6e-09 Score=102.16 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
..++|+++|.+|||||||+|++....... ..+++ ..........+..+.++||||.... .... ..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~---~~~t~-g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~---~~ 72 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTV-GFNVETVTYKNVKFNVWDVGGQDKI--------RPLW---RH 72 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc---ccCCc-ccceEEEEECCEEEEEEECCCCHHH--------HHHH---HH
Confidence 45899999999999999999998654322 22222 2211233346789999999997321 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
++ ..+|+++||+++.... .-..+.+.+.+.+... ...|+++|.||+|+.
T Consensus 73 ~~--~~a~~ii~v~D~t~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 73 YY--TGTQGLIFVVDSADRD---RIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred Hh--ccCCEEEEEEeCCchh---hHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 33 3579999997765432 1123344444443321 247999999999975
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.01 E-value=4e-09 Score=101.99 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=71.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
...++|+++|++|||||||+|.|.+.......+ |...........+..+.++||||.... .....
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~~-----------~~~~~ 76 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRAI-----------RPYWR 76 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHHH-----------HHHHH
Confidence 347899999999999999999999975433222 222222334456889999999996321 11222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|++...... -......+...... ....|+++++||+|...
T Consensus 77 ~~~--~~~~~ii~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 77 NYF--ENTDCLIYVIDSADKKR---LEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHh--cCCCEEEEEEeCCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 333 35689999976653211 11122222222211 12579999999999763
No 134
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.01 E-value=3.1e-09 Score=104.87 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=73.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
...+|+++|.+|||||||+|++.+...... ..|.........+++..+.++||||.... .. ....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~--------~~---~~~~ 82 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQA--------RR---LWKD 82 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHHH--------HH---HHHH
Confidence 368999999999999999999998654322 12333333455667899999999995321 11 1123
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|++...... -......+.+.++. ....|+++|+||+|+.
T Consensus 83 ~~--~~ad~iilV~D~~~~~s---~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 83 YF--PEVDGIVFLVDAADPER---FQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred Hh--ccCCEEEEEEECCcHHH---HHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 33 35699999976643211 11233444444332 2358999999999975
No 135
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=3.8e-09 Score=105.21 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+|+|.+|||||||+|.+.+.... .....+++. +.......+++ ..+.|+||||-.. .. ....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~---~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER--------FR---SVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH--------HH---HhhH
Confidence 48999999999999999999976532 222233332 22222334444 4678999999421 11 1112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.+++....-..-...+..+.+... ...|+++|.||+|+..
T Consensus 69 ~~~--~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 69 AYY--RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSG 120 (191)
T ss_pred HHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchh
Confidence 233 357999999876543210011223444444321 2579999999999864
No 136
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.01 E-value=1e-09 Score=117.10 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe-EEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
..|.+||-||+|||||+|+|...+ .+++.++.||-.+......+++. ++.+.|.||+...... |...-..+-++
T Consensus 197 advGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~----nkGlG~~FLrH 271 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM----NKGLGYKFLRH 271 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccc----cCcccHHHHHH
Confidence 368899999999999999999754 58888999999887776665554 5999999999887544 33333444445
Q ss_pred HhcCCCCEEEEEEeccCc---cCCCCcHHHHHHHHHHhCCc-ccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLI---SMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~---t~~~~D~~lLk~L~e~fG~~-i~k~vIIVLTK~D~l 254 (747)
++. ...++||+++... +.. ++.++|..=.+.+.+. ..+|.+||.||+|..
T Consensus 272 iER--~~~l~fVvD~s~~~~~~p~-~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 272 IER--CKGLLFVVDLSGKQLRNPW-QQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred HHh--hceEEEEEECCCcccCCHH-HHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 543 4899999888766 221 2222222222233332 368999999999975
No 137
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.00 E-value=6.3e-09 Score=101.99 Aligned_cols=113 Identities=10% Similarity=0.042 Sum_probs=70.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
..+|+++|.+|||||||+|.+.+....... .|.........+.+..+.++||||.... ... ...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~---~~~~ 79 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS----PTIGSNVEEIVYKNIRFLMWDIGGQESL--------RSS---WNTY 79 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEECCeEEEEEECCCCHHH--------HHH---HHHH
Confidence 478999999999999999999875543321 2222222344556889999999997421 111 1223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
+ ..+|+++||++.+.... -....+.+.+.+... ...|+++|+||+|+.
T Consensus 80 ~--~~~d~vi~V~D~s~~~~---~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 80 Y--TNTDAVILVIDSTDRER---LPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred h--hcCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 3 35799999977653211 111223333333211 247999999999975
No 138
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.99 E-value=4.9e-09 Score=99.59 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|++++.... ....+++..........++ ..+.++||||.... .. ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~---~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY--------AA---IRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhh--------hH---HHHH
Confidence 48999999999999999999975433 2334444443333334443 46899999996422 11 1122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ...+++++|.+++....-..-...+..+.... .....|+++|+||+|+..
T Consensus 68 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YH--RSGEGFLLVFSITDMESFTATAEFREQILRVK-DDDNVPLLLVGNKCDLED 119 (164)
T ss_pred Hh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEcccccc
Confidence 33 24588888866543221000112333333321 123689999999999864
No 139
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.98 E-value=3.4e-09 Score=105.50 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
+|+|+|.+|||||||+|++++..... ...+++..........++. .+.|+||||.... .... ..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY--------TALR---DQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhh--------HHHH---HHH
Confidence 58999999999999999998654322 2334443333233344554 4788999996321 1111 123
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-cccccEEEEEeccCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~i~k~vIIVLTK~D~l~ 255 (747)
+ ..+|++++|.+++....-..-..++..+...... ....|+|+|.||+|+..
T Consensus 68 ~--~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 68 I--REGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred H--HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 3 2569999997765432100112344444444321 23579999999999863
No 140
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.98 E-value=2.7e-09 Score=102.78 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
+|+|+|.+|||||||++++++... ...+.+++.........+++. .+.++||||...... .. ...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~----~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQ----LERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------ch----HHHH
Confidence 589999999999999999987442 233444443333333444554 578999999863100 01 1123
Q ss_pred HhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ .+|++++|.+++.... ... ..++..+.+........|+++|.||+|+.
T Consensus 69 ~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 69 IR--WADGFVLVYSITDRSS-FDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred HH--hCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 32 4699999987754321 111 22334444432112358999999999975
No 141
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.98 E-value=4.7e-09 Score=100.56 Aligned_cols=116 Identities=21% Similarity=0.167 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+++++....... ..+++..........+|. .+.|+||||..... .+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~--- 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--------SMRDL--- 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCchhheEEEEEEECCEEEEEEEEECCCccccc--------chHHH---
Confidence 6899999999999999999997644322 233333333334444554 46789999964321 11111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|.+++....-..-..++..+.+... ....|+++|.||+|+.
T Consensus 69 ~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~ 119 (163)
T cd04176 69 YI--KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLE 119 (163)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccch
Confidence 22 246999999776543210011233334444321 2358999999999975
No 142
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.98 E-value=9.5e-09 Score=100.21 Aligned_cols=111 Identities=12% Similarity=0.142 Sum_probs=68.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+++|.+|||||||+|.+.+....... + |...........+..+.++||||-... ... ...++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~---~-t~g~~~~~~~~~~~~~~i~D~~G~~~~--------~~~---~~~~~- 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA---P-TVGFTPTKLRLDKYEVCIFDLGGGANF--------RGI---WVNYY- 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc---C-cccceEEEEEECCEEEEEEECCCcHHH--------HHH---HHHHH-
Confidence 4899999999999999999986222222 1 222222344557889999999995311 111 22344
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
..+|+++||++...... -..+...+.+.+.. ....|+++|.||.|+.
T Consensus 65 -~~a~~ii~V~D~s~~~s---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 65 -AEAHGLVFVVDSSDDDR---VQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred -cCCCEEEEEEECCchhH---HHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 35799999976654321 11223333333321 1257999999999975
No 143
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.98 E-value=1e-08 Score=98.59 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=69.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|||||||++++++...... ..+..+.+.......+.+ ..+.++||||.... . ....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~---~~~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF--------R---SITQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------H---HHHH
Confidence 47999999999999999999986543221 111122234333445556 45788999996321 1 1112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|++.+....-..-...+..+..... ...|+++|.||+|+..
T Consensus 75 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 75 SYY--RSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE 126 (169)
T ss_pred HHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 334 357999999776432110001123333333322 2478899999999863
No 144
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.97 E-value=7.4e-09 Score=105.40 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEc---CeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~---G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
++|+++|.+|||||||+|.+++.... ..+.+++ .+.......+. ...+.|+||||.... ... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~--~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~--------~~l---~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG--KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG--------GKM---L 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH--------HHH---H
Confidence 58999999999999999999976432 2222332 23333333443 357899999995221 111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-cccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~i~k~vIIVLTK~D~l 254 (747)
..++ ..+|++++|.+++....-..-..++..+.+.... ....|+|+|.||+|+.
T Consensus 68 ~~~~--~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 68 DKYI--YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 2233 3679999998765432100112344455554332 2235789999999986
No 145
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.97 E-value=5e-09 Score=103.66 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|++++....... .+..+.+.......+++ ..+.++||||.... .. ....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~---~~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF--------RS---LNNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------Hh---hHHH
Confidence 58999999999999999999986543211 11222223223334444 45689999995321 11 1122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|.+++....-..-..++..+....+ -..|+++|.||+|+.
T Consensus 69 ~~--~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 69 YY--RGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLV 118 (188)
T ss_pred Hc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCc
Confidence 33 367999999876543210001122333333222 136899999999976
No 146
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.97 E-value=7.1e-09 Score=101.02 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
||+++|.+|||||||+|++.+.... .. ..|...........+..+.++||||.... ... ...++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~--------~~~---~~~~~- 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QP-IPTIGFNVETVEYKNLKFTIWDVGGKHKL--------RPL---WKHYY- 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---Cc-CCcCceeEEEEEECCEEEEEEECCCChhc--------chH---HHHHh-
Confidence 5899999999999999999986321 22 23433333345567889999999997432 111 11222
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
..+|+++||++.+.... -..+...+.+.+... ...|++||.||+|+.
T Consensus 65 -~~ad~ii~V~D~s~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 65 -LNTQAVVFVVDSSHRDR---VSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred -ccCCEEEEEEeCCcHHH---HHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 35799999977654321 112334444443221 136999999999975
No 147
>PRK12289 GTPase RsgA; Reviewed
Probab=98.97 E-value=9.2e-10 Score=121.07 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=79.9
Q ss_pred hcccccEEEEEEeccCCCCCCCHHHHHHHHhc-----------cccccccccc--hhHHHH-hhcchhHHHHHhhcccCC
Q 004520 50 KIEDLQVKFLRLLQRFGQSQDNILAVKVLYRL-----------HLATLIRAGE--SDMKMV-NLRSDRTRAIAREQEATG 115 (747)
Q Consensus 50 kle~~dVillvLDaR~gls~~d~~vaqvL~rl-----------~lad~~~~~~--~~~~~~-~lg~~~~~~iA~~~~~~~ 115 (747)
.+..+|++++|+|...+. .....+.++|... +|+|...... .....+ .+++. +..+++... .+
T Consensus 86 ~~aNvD~vLlV~d~~~p~-~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~-v~~iSA~tg-~G 162 (352)
T PRK12289 86 PVANADQILLVFALAEPP-LDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQ-PLFISVETG-IG 162 (352)
T ss_pred hhhcCCEEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCe-EEEEEcCCC-CC
Confidence 588999999999987542 3333556665421 1566543211 111111 23332 122222221 22
Q ss_pred CCCCC---CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCC-------ceeeEEEEEeEEcCeEEEEEeCCCCCCccc
Q 004520 116 IPDLD---FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPSCV 185 (747)
Q Consensus 116 ~~~~~---~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~-------tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~ 185 (747)
+..+. ....++|+|+||||||||||+|++.....++..++ ||+....+...-+| .||||||+.....
T Consensus 163 I~eL~~~L~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 163 LEALLEQLRNKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred HHHHhhhhccceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence 21111 12248999999999999999999998888877766 78888776653233 8999999988765
No 148
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.96 E-value=1.1e-08 Score=99.37 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|||||||+|++++....... .+..+.+.......+.+ ..+.++||||.... ...+ ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---~~ 70 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT-EATIGVDFRERTVEIDGERIKVQLWDTAGQERF-------RKSM---VQ 70 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccceeEEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhh---HH
Confidence 478999999999999999999875432111 11111223333344455 57899999996321 1111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.+++.... ..+ ..++..+... ......|+|+|.||+|+..
T Consensus 71 ~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 71 HYY--RNVHAVVFVYDVTNMAS-FHSLPSWIEECEQH-SLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred Hhh--cCCCEEEEEEECCCHHH-HHhHHHHHHHHHHh-cCCCCCCEEEEEECccchh
Confidence 222 36799999977754321 111 1222233332 1223579999999999763
No 149
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.96 E-value=1.3e-09 Score=99.37 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=66.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCce---ecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTE---TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~---vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
||+|+|.+||||||||++|++..... .....+.|..............+.++|++|....... ....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----~~~~------ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ----HQFF------ 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT----SHHH------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc----ccch------
Confidence 69999999999999999999877551 1223333333333333223345889999998433111 1111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSS 252 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D 252 (747)
+ ..+|++++|.++..... ... ..++.++...-+.....|+|+|.||.|
T Consensus 71 -~--~~~d~~ilv~D~s~~~s-~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 -L--KKADAVILVYDLSDPES-LEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -H--HHSCEEEEEEECCGHHH-HHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -h--hcCcEEEEEEcCCChHH-HHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 1 24699999977654321 111 123444544433233589999999998
No 150
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.96 E-value=7.8e-09 Score=99.83 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
.++|+++|.+|||||||+|++.+..... ..++++. +........++ ..+.++||||.... . ...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~---~~~ 68 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF--------R---AVT 68 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH--------H---HHH
Confidence 3799999999999999999999764322 2223222 22222333444 46789999995311 1 112
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l~ 255 (747)
..++ ..+|++++|.++..... ...+..++.+... .....|+++|.||+|+..
T Consensus 69 ~~~~--~~~~~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 69 RSYY--RGAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHh--cCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 2233 36799999987754321 1223333333211 122468999999999863
No 151
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.95 E-value=2.9e-09 Score=117.31 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC-----------------eEEEEEeCCCCCCccc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSCV 185 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl~~~~~ 185 (747)
++|+|||.||||||||+|+|++.. +.+++++++|.++......+.+ .++.|+||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999999987 7888899999887765555443 2589999999987533
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 004520 186 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 216 (747)
Q Consensus 186 ~~~~~~~~il~~ik~~I~~~~~DvVL~V~~l 216 (747)
.+ +.+...+...+ ..+|++++|++.
T Consensus 82 ~g----~glg~~fL~~i--~~aD~li~VVd~ 106 (364)
T PRK09601 82 KG----EGLGNQFLANI--REVDAIVHVVRC 106 (364)
T ss_pred hH----HHHHHHHHHHH--HhCCEEEEEEeC
Confidence 22 23333333333 357999999765
No 152
>PTZ00258 GTP-binding protein; Provisional
Probab=98.95 E-value=6.4e-09 Score=115.69 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=66.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-----------------CeEEEEEeCCCCCC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-----------------GIKVTFIDTPGFLP 182 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-----------------G~~v~LIDTPGl~~ 182 (747)
...++|+|||.||||||||+|+|++.. ..+++++++|.++......+. +.++.|+||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 456799999999999999999998865 578889999988777666554 23589999999986
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 216 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~l 216 (747)
....+ ..+...+...++ .+|++++|++.
T Consensus 98 ga~~g----~gLg~~fL~~Ir--~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEG----EGLGNAFLSHIR--AVDGIYHVVRA 125 (390)
T ss_pred CCcch----hHHHHHHHHHHH--HCCEEEEEEeC
Confidence 53322 222233333343 46999999775
No 153
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.95 E-value=3.1e-09 Score=113.94 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=57.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
..-++++||.|+||||||+|.|+|. ...+++++.||..+....+++.|-+|.++|+||+......
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt-~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~ 126 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNT-KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASS 126 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCC-CccccccCceecccccceEeecCceEEEEcCcccccCccc
Confidence 3568999999999999999999984 5677889999999999999999999999999999876544
No 154
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.95 E-value=2.2e-09 Score=114.35 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=63.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe-----------------EEEEEeCCCCCCcccch
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-----------------KVTFIDTPGFLPSCVRN 187 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-----------------~v~LIDTPGl~~~~~~~ 187 (747)
|+|||.||||||||+|+|++... .+++++++|.++......+.+. ++.|+||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 57999999999999999999876 7888999998877766555443 5999999999865432
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 004520 188 VKRNRKIMLSVKKFIRRSPPDIVLYFERL 216 (747)
Q Consensus 188 ~~~~~~il~~ik~~I~~~~~DvVL~V~~l 216 (747)
.+.+...+...+ ..+|++++|++.
T Consensus 79 ---~~glg~~fL~~i--~~~D~li~VV~~ 102 (274)
T cd01900 79 ---GEGLGNKFLSHI--REVDAIAHVVRC 102 (274)
T ss_pred ---hhHHHHHHHHHH--HhCCEEEEEEeC
Confidence 223333333333 357999999764
No 155
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.94 E-value=8.8e-09 Score=100.59 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.+|+|+|.+|||||||+|++++.... ....+++...........+ ..+.++||||..+. ..... .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~---~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY--------SILPQ---K 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhh--------HHHHH---H
Confidence 58999999999999999999976432 2233444332223333343 46789999997422 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+. ...|++++|.+.+....-..-..+...+.+..+ ....|+|+|.||+|+..
T Consensus 69 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 69 YS--IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 22 246888888665543210011223334443322 23579999999999863
No 156
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.94 E-value=8.3e-09 Score=99.96 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE--cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~--~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|++++...... .+. |.......... ...++.++||||.... ... ...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~----~~~ 66 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN--VPR-VLPEITIPADVTPERVPTTIVDTSSRPQD-------RAN----LAA 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc--CCC-cccceEeeeeecCCeEEEEEEeCCCchhh-------hHH----Hhh
Confidence 4899999999999999999998654322 222 22111222222 3467899999997532 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|++++.... ... ..++..+.+. . ...|+++|.||+|+.+
T Consensus 67 ~~--~~ad~~ilv~d~~~~~s-~~~~~~~~~~~i~~~-~--~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 67 EI--RKANVICLVYSVDRPST-LERIRTKWLPLIRRL-G--VKVPIILVGNKSDLRD 117 (166)
T ss_pred hc--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEEchhccc
Confidence 33 35799999977654221 111 1233334332 2 2579999999999864
No 157
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.94 E-value=6.8e-09 Score=97.53 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=61.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+++|.+|||||||+|++.+.... . ..|.. ..+.+ .++||||.... .......+...+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~-~~t~~-----~~~~~---~~iDt~G~~~~-------~~~~~~~~~~~~- 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----Y-KKTQA-----VEYND---GAIDTPGEYVE-------NRRLYSALIVTA- 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----c-cccee-----EEEcC---eeecCchhhhh-------hHHHHHHHHHHh-
Confidence 7999999999999999999987532 1 11221 12222 68999997321 112222232222
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|++++|.+++.... ..+..+ .+.+ .+|+|+|+||+|+.
T Consensus 61 -~~ad~vilv~d~~~~~s-~~~~~~----~~~~----~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 61 -ADADVIALVQSATDPES-RFPPGF----ASIF----VKPVIGLVTKIDLA 101 (142)
T ss_pred -hcCCEEEEEecCCCCCc-CCChhH----HHhc----cCCeEEEEEeeccC
Confidence 46899999987654332 122222 2222 24999999999986
No 158
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.94 E-value=1.4e-08 Score=106.30 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEE--------------------------------------
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 164 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~-------------------------------------- 164 (747)
..|+|+|++|+||||++|+|+|......+. ..+|+.+..+.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~ 105 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTG 105 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcC
Confidence 379999999999999999999975333321 12222211110
Q ss_pred -----------eEE---cCeEEEEEeCCCCCCcccch--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc-HH
Q 004520 165 -----------GSV---NGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD-FP 227 (747)
Q Consensus 165 -----------~~~---~G~~v~LIDTPGl~~~~~~~--~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D-~~ 227 (747)
.++ ....++||||||+......+ ......+.+.+..+++. ..+++|+|++....-. ..| ..
T Consensus 106 ~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~d~~-~~d~l~ 183 (240)
T smart00053 106 TNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANVDLA-NSDALK 183 (240)
T ss_pred CCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCCCCC-chhHHH
Confidence 111 11478999999997542111 12223444556667653 3468888876532111 234 35
Q ss_pred HHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 228 LLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 228 lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
+++.+... ++++|+|+||+|...+
T Consensus 184 ia~~ld~~-----~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDPQ-----GERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHc-----CCcEEEEEECCCCCCc
Confidence 55555443 6899999999999854
No 159
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.94 E-value=6e-09 Score=100.95 Aligned_cols=118 Identities=18% Similarity=0.162 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+||||||++|++.+..... ...+++.........+++ ..+.++||||..... ... .
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~---~ 67 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIE--SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT--------AMR---E 67 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch--------hhh---H
Confidence 3689999999999999999999765322 233444333233333444 477899999974321 111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..++.+++|.+++....-..-..+...+.+.+. ....|+++|.||.|...
T Consensus 68 ~~~--~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 68 LYI--KSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED 120 (168)
T ss_pred HHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence 122 246888888766543210011233344444332 23579999999999863
No 160
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.94 E-value=1.5e-08 Score=100.69 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.++|+++|.+|||||||++.+....... ..+ |...........+..+.++||||.... ... ...+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~---~~~~ 81 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT---TIP-TIGFNVETVEYKNLKFTMWDVGGQDKL--------RPL---WRHY 81 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---cCC-ccccceEEEEECCEEEEEEECCCCHhH--------HHH---HHHH
Confidence 5899999999999999999997543321 223 222222234457789999999997321 111 1223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
+ ..+|++|||++.+.... -....+.+.+.+... ...|++||.||.|+.
T Consensus 82 ~--~~ad~iI~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 82 Y--QNTNGLIFVVDSNDRER---IGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred h--cCCCEEEEEEeCCCHHH---HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 3 35799999987653221 112233344433321 247999999999974
No 161
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.93 E-value=1.5e-08 Score=98.83 Aligned_cols=118 Identities=18% Similarity=0.118 Sum_probs=66.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE------------cCeEEEEEeCCCCCCcccchhh
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------NGIKVTFIDTPGFLPSCVRNVK 189 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------------~G~~v~LIDTPGl~~~~~~~~~ 189 (747)
.++|+++|.+|||||||+|++.+..... ...+..+.+.......+ ....+.|+||||-..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence 4899999999999999999998754321 11111111222222221 135789999999421
Q ss_pred hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 190 RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 190 ~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.. .....++ ..+|++++|.+++.... ..+ ..++..+.... .....|+++|.||+|+..
T Consensus 76 -~~---~~~~~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 76 -FR---SLTTAFF--RDAMGFLLIFDLTNEQS-FLNVRNWMSQLQTHA-YCENPDIVLCGNKADLED 134 (180)
T ss_pred -HH---HHHHHHh--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchh
Confidence 11 1122233 36799999977653221 111 12233333221 112468999999999864
No 162
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.93 E-value=1.1e-08 Score=98.82 Aligned_cols=120 Identities=18% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..++|+++|.+|||||||+|++++...... ..+..+.+.......+++. .+.|+||||-... ... .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~---~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF--------RSL---R 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH--------HHh---H
Confidence 458999999999999999999997543221 1222222332333344454 5678999995211 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
..++ ..+|++++|.+++....-..-......+...... ....|+++|.||+|+.
T Consensus 72 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 72 TPFY--RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 2233 3569999887776432100111233333333221 1246999999999975
No 163
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.93 E-value=5.1e-09 Score=101.98 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee--eEEEEEeEE--cCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~--~~~~~~~~~--~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
++|+++|.+|||||||+|+++...... ...+ |. +........ ....+.++||||...... ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~--- 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVA-TLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------LR--- 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCC-ceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------cc---
Confidence 489999999999999999998643221 1112 22 222222222 345789999999743211 00
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+. ..+|++++|.+++....-..-...++.+.+..+ ..|+++|.||+|+.
T Consensus 67 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 67 DGYY--IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 1122 357999999776543210011124444444432 68999999999985
No 164
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.93 E-value=9e-09 Score=108.52 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcee--cCC-C--------------CceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTET--DAF-Q--------------PATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~v--s~~-~--------------~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
+|+++|.+|+|||||+|+|++...... +.. . +.|.......+.+.+..+.||||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 589999999999999999986432211 111 1 12222333455678899999999998432
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 187 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 187 ~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
......++. .+|++++|++...... .....+++.+.. ...|.++|+||+|..
T Consensus 78 --------~~~~~~~l~--~aD~~i~Vvd~~~g~~-~~~~~~~~~~~~-----~~~p~iivvNK~D~~ 129 (268)
T cd04170 78 --------VGETRAALR--AADAALVVVSAQSGVE-VGTEKLWEFADE-----AGIPRIIFINKMDRE 129 (268)
T ss_pred --------HHHHHHHHH--HCCEEEEEEeCCCCCC-HHHHHHHHHHHH-----cCCCEEEEEECCccC
Confidence 112223332 4699999977654321 123344444433 257999999999975
No 165
>PLN03127 Elongation factor Tu; Provisional
Probab=98.93 E-value=8.1e-09 Score=117.06 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=80.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhC------CCCceec---------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCC
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFD------QTKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLP 182 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG------~~~a~vs---------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~ 182 (747)
.....++|+++|+.++|||||+|+|.+ +...... ...+.|.+.....++.++.++.||||||..+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 345679999999999999999999973 3221111 1256788877777777888999999999842
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCccccc-EEEEEeccCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 254 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~-vIIVLTK~D~l 254 (747)
. +..+...+ ..+|++++|++.+.. ...++...+..+... ..| +|+++||+|+.
T Consensus 137 f-----------~~~~~~g~--~~aD~allVVda~~g-~~~qt~e~l~~~~~~-----gip~iIvviNKiDlv 190 (447)
T PLN03127 137 Y-----------VKNMITGA--AQMDGGILVVSAPDG-PMPQTKEHILLARQV-----GVPSLVVFLNKVDVV 190 (447)
T ss_pred h-----------HHHHHHHH--hhCCEEEEEEECCCC-CchhHHHHHHHHHHc-----CCCeEEEEEEeeccC
Confidence 1 12222222 257999999776432 123456666666553 466 57899999986
No 166
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.93 E-value=7.6e-09 Score=103.74 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=70.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
+|+++|.+|||||||+|++++.... ..+.+++.........+.+ ..+.|+||||.... ..+. ..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~---~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF--------PAMR---KLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh--------hHHH---HHH
Confidence 5899999999999999999986533 2233444333333445556 57889999997432 1111 112
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+ ..+|++++|+++.....-..-..++..+.+... ....|+|+|+||+|+..
T Consensus 68 ~--~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 I--QNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred h--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 2 357999999776532210011122333333322 23589999999999864
No 167
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.93 E-value=3.8e-09 Score=117.06 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC----CCc-----------eecCCCC---ceeeEEEE---EeEE--c---CeEEEE
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQ----TKT-----------ETDAFQP---ATDCIREV---KGSV--N---GIKVTF 174 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~----~~a-----------~vs~~~~---tT~~~~~~---~~~~--~---G~~v~L 174 (747)
..+.|+|+|+.|+|||||||++++. +.. .+++.+| +|+++..+ ..++ . ..+++|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4689999999999999999999998 666 5677778 88887652 2222 1 158999
Q ss_pred EeCCCCCCcccchhhhhHH----------------HHHH--HHHHHhcCCCCEEEEEE-ecc-----CccCCCCcHHHHH
Q 004520 175 IDTPGFLPSCVRNVKRNRK----------------IMLS--VKKFIRRSPPDIVLYFE-RLD-----LISMGFSDFPLLK 230 (747)
Q Consensus 175 IDTPGl~~~~~~~~~~~~~----------------il~~--ik~~I~~~~~DvVL~V~-~ld-----~~t~~~~D~~lLk 230 (747)
|||+|+.+.+..+.....+ -..+ .++.+. ...++.|+|. +.+ +......+..+++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999999876554222222 0001 223333 2467888775 321 0111124667888
Q ss_pred HHHHHhCCcccccEEEEEeccCCC
Q 004520 231 LMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 231 ~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.|++. .+|+|+|+|+.|-.
T Consensus 175 eLk~~-----~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKEL-----NKPFIILLNSTHPY 193 (492)
T ss_pred HHHhc-----CCCEEEEEECcCCC
Confidence 88776 79999999999954
No 168
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.93 E-value=7e-09 Score=94.10 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=66.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE--cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhc
Q 004520 127 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 204 (747)
Q Consensus 127 VVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~--~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~ 204 (747)
|+|.+|+|||||+|+|++...... ...++........... .+..+.++||||..... ... ..++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~----~~~~-- 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-------SLR----RLYY-- 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-ccccchhheeeEEEEECCEEEEEEEEecCChHHHH-------hHH----HHHh--
Confidence 589999999999999998765311 1112222222222222 36789999999985431 111 2222
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 205 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 205 ~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
..+|++++|++...... ..+.................|+++|+||+|...+
T Consensus 67 ~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 67 RGADGIILVYDVTDRES-FENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 36799999977664321 0111111001111223347899999999998754
No 169
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.92 E-value=1.6e-08 Score=97.86 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
+||+++|.+|||||||++++....... ..+++ .............+.|+||||.... ...+ ..+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~-g~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~---~~~~ 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTI-GFNVETVEYKNISFTVWDVGGQDKI--------RPLW---RHYF 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCCC-CcceEEEEECCEEEEEEECCCCHhH--------HHHH---HHHh
Confidence 479999999999999999996543321 22322 2222233446788999999997321 1111 2233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
..+|+++||.+.+.... -..+.+.+.+..... ...|+++|.||.|+.
T Consensus 66 --~~ad~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 66 --QNTQGLIFVVDSNDRER---IGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred --cCCCEEEEEEeCCCHHH---HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 35799999977654321 112233333332211 147999999999975
No 170
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.91 E-value=2.2e-08 Score=98.51 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=70.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
..++|+++|.+|||||||++.+...... ...+++ ..........+..+.|+||||.... ... ...
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~---~~~~t~-~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~---~~~ 76 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV---TTIPTI-GFNVETVTYKNISFTVWDVGGQDKI--------RPL---WRH 76 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC---CcCCcc-ccceEEEEECCEEEEEEECCCChhh--------HHH---HHH
Confidence 3589999999999999999999643321 122322 2222233456789999999996321 111 223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
++ ..+|+++||++++.... -....+.+.+.+... ...|++||.||+|+.
T Consensus 77 ~~--~~ad~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 77 YY--TNTQGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred Hh--CCCCEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 33 35799999977653221 112333444433221 146999999999974
No 171
>PRK12735 elongation factor Tu; Reviewed
Probab=98.91 E-value=1.3e-08 Score=113.68 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=77.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCC------CCcee---------cCCCCceeeEEEEEeEEcCeEEEEEeCCCCC
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFDQ------TKTET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG~------~~a~v---------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 181 (747)
......++|+++|++++|||||+|+|++. ..+.. ....+.|.+.....+..++.++.|+||||..
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34456799999999999999999999862 22111 1134567776666666678899999999972
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEE-EEEeccCCC
Q 004520 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI-LVMTHSSST 254 (747)
Q Consensus 182 ~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vI-IVLTK~D~l 254 (747)
+....+...+ ..+|++++|++.... ....+...+..+... ..|.| +++||+|+.
T Consensus 87 -----------~f~~~~~~~~--~~aD~~llVvda~~g-~~~qt~e~l~~~~~~-----gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 87 -----------DYVKNMITGA--AQMDGAILVVSAADG-PMPQTREHILLARQV-----GVPYIVVFLNKCDMV 141 (396)
T ss_pred -----------HHHHHHHhhh--ccCCEEEEEEECCCC-CchhHHHHHHHHHHc-----CCCeEEEEEEecCCc
Confidence 1222222223 367999999776532 112344555544432 45655 579999986
No 172
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.91 E-value=1.1e-08 Score=120.42 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecC----------CCC----------------------ceeeEEEEEeEE
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA----------FQP----------------------ATDCIREVKGSV 167 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~----------~~~----------------------tT~~~~~~~~~~ 167 (747)
...++|+++|++|+|||||+|.|+......+.. ..+ .|.+.....+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 445899999999999999999999765444311 122 333444445566
Q ss_pred cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 168 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 168 ~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
++.++.||||||..+ ....+...+ ..+|++++|++....- ...+...+..+... | .+++|||
T Consensus 102 ~~~~~~liDtPG~~~-----------f~~~~~~~~--~~aD~~llVvda~~g~-~~~t~e~~~~~~~~-~---~~~iivv 163 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-----------YTRNMVTGA--STADLAIILVDARKGV-LTQTRRHSFIASLL-G---IRHVVLA 163 (632)
T ss_pred CCceEEEEECCChHH-----------HHHHHHHHH--HhCCEEEEEEECCCCc-cccCHHHHHHHHHh-C---CCeEEEE
Confidence 788999999999631 111111222 3679999997764321 12344444444332 3 2578999
Q ss_pred EeccCCCC
Q 004520 248 MTHSSSTL 255 (747)
Q Consensus 248 LTK~D~l~ 255 (747)
+||+|+..
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999863
No 173
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.91 E-value=1.2e-08 Score=100.40 Aligned_cols=115 Identities=18% Similarity=0.101 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-C--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-G--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+|+|.+|||||||+|++++..... ...+++........... + ..+.++||||.... .... .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE--EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY--------DRLR---P 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH--------HHHH---H
Confidence 589999999999999999999865321 12232222211122222 2 46889999995321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHH-HHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLL-KLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lL-k~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ..+|++++|.+++.... -..+. .++..........|+|+|.||+|+..
T Consensus 68 ~~~--~~ad~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 68 LSY--PDVDVLLICYAVDNPTS---LDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HhC--CCCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 122 46899999987754321 11111 12222211112579999999999863
No 174
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.91 E-value=7.2e-09 Score=114.37 Aligned_cols=134 Identities=18% Similarity=0.118 Sum_probs=81.6
Q ss_pred chHhhc-ccccEEEEEEeccCCCCCCCHHHHHHHHhcc------ccccccccch---hHH-----HHhhcch--hHHHHH
Q 004520 46 DPLVKI-EDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAGES---DMK-----MVNLRSD--RTRAIA 108 (747)
Q Consensus 46 ~~~~kl-e~~dVillvLDaR~gls~~d~~vaqvL~rl~------lad~~~~~~~---~~~-----~~~lg~~--~~~~iA 108 (747)
.+...+ ..++++++++|+.....+-...+.+.+.... |+|.+..... ... ....++. ....++
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vS 134 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVS 134 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEec
Confidence 344444 6789999999998777777777777764222 5554432110 011 1111211 111111
Q ss_pred hhcccCCCC-------CCCCCeEEEEEcCCCCcHHHHHHHHhCCC-----CceecCCCCceeeEEEEEeEEcCeEEEEEe
Q 004520 109 REQEATGIP-------DLDFSIRILVLGKTGVGKSATINSIFDQT-----KTETDAFQPATDCIREVKGSVNGIKVTFID 176 (747)
Q Consensus 109 ~~~~~~~~~-------~~~~~lrIlVVGk~GvGKSSLINsLlG~~-----~a~vs~~~~tT~~~~~~~~~~~G~~v~LID 176 (747)
+.. ..+.. ......++++||.||||||||||+|++.. .+.++..+++|.....+.. +..+.|+|
T Consensus 135 Ak~-g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~D 210 (360)
T TIGR03597 135 AKK-GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYD 210 (360)
T ss_pred CCC-CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEE
Confidence 111 11110 01113589999999999999999999854 3566888899998876653 34468999
Q ss_pred CCCCCCc
Q 004520 177 TPGFLPS 183 (747)
Q Consensus 177 TPGl~~~ 183 (747)
|||+...
T Consensus 211 tPG~~~~ 217 (360)
T TIGR03597 211 TPGIINS 217 (360)
T ss_pred CCCCCCh
Confidence 9999865
No 175
>PTZ00369 Ras-like protein; Provisional
Probab=98.90 E-value=1.2e-08 Score=101.36 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..++|+++|.+|||||||++++++..... ...+++.........+++ ..+.++||||..+. .....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~l~~-- 71 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY--------SAMRD-- 71 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc--------hhhHH--
Confidence 35899999999999999999999765332 222333222233333444 45778999997543 11111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+. ...|++++|.+++....-..-......+.+... .-..|+++|.||+|+.
T Consensus 72 -~~~--~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 72 -QYM--RTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLD 123 (189)
T ss_pred -HHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 223 256999999776543210011123333333221 2256999999999974
No 176
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.90 E-value=1.3e-08 Score=106.15 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcee--cCC---------------CCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTET--DAF---------------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~v--s~~---------------~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
+|+++|++|+|||||+|+|+....... +.. .+.|.......+.+.+.++.|+||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 589999999999999999986432211 110 112223344556778999999999998643
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 187 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 187 ~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
... ...+++ .+|++++|++....- ......+++.+.+. ..|+++++||+|..
T Consensus 78 ----~~~----~~~~l~--~aD~~IlVvd~~~g~-~~~~~~~~~~~~~~-----~~P~iivvNK~D~~ 129 (237)
T cd04168 78 ----IAE----VERSLS--VLDGAILVISAVEGV-QAQTRILWRLLRKL-----NIPTIIFVNKIDRA 129 (237)
T ss_pred ----HHH----HHHHHH--HhCeEEEEEeCCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 111 222332 458999987654321 11233445444432 57999999999976
No 177
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.90 E-value=2.6e-08 Score=100.16 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..++|+|+|.+|||||||+|++++..... ...++. .+.......+.| ..+.|+||||-... .. .
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~---~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF--------RT---I 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCccccceeEEEEEEECCEEEEEEEEeCCCchhH--------HH---H
Confidence 35899999999999999999999865321 111221 122223333444 46789999995321 11 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
...++ ..++++++|.++..... -..+..++.......-..|++||.||+|+..
T Consensus 72 ~~~~~--~~a~~iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 72 TSTYY--RGTHGVIVVYDVTNGES---FVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHh--CCCcEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 12233 35789999977643221 1122222322221122468999999999763
No 178
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.89 E-value=2.2e-08 Score=98.43 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=70.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|||||||++.+++..... ...+++.........+++ ..+.|+||||.... ..+. .
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~l~---~ 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF--------TAMR---D 68 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhh--------HHHh---H
Confidence 4799999999999999999999764322 223333333333345556 46789999997422 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.++ ..+|++++|.+++.... ... ..+.+.+.+.. .....|+|+|.||+|+.
T Consensus 69 ~~~--~~~d~~ilv~d~~~~~S-f~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 69 QYM--RCGEGFIICYSVTDRHS-FQEASEFKKLITRVR-LTEDIPLVLVGNKVDLE 120 (172)
T ss_pred HHh--hcCCEEEEEEECCchhH-HHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhh
Confidence 223 25699999977754321 111 12233343321 12357999999999975
No 179
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.89 E-value=1.3e-08 Score=102.12 Aligned_cols=117 Identities=11% Similarity=0.113 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEc---CeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~---G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
++|+|+|.+|||||||+|++++...... +.++. .+.......+. ...+.|+||||.... ..+ .
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~--~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~--------~~~---~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF--------GGM---T 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh--------hhh---H
Confidence 5899999999999999999998643221 22222 12222233333 346889999997321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhC--CcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFG--TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG--~~i~k~vIIVLTK~D~l~ 255 (747)
..++ ..+|++++|.+++.... ... ..++..+..... .....|+|+|.||+|+..
T Consensus 68 ~~~~--~~a~~~ilv~D~t~~~s-~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 68 RVYY--RGAVGAIIVFDVTRPST-FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred HHHh--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 2233 36799999977653321 011 122233333221 123579999999999863
No 180
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.89 E-value=6.9e-09 Score=101.11 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=62.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
+|+++|.+|||||||+|+|.|.... ...|..+ .+.+. .+|||||..... ......+...+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v-----~~~~~--~~iDtpG~~~~~-------~~~~~~~~~~~- 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAV-----EFNDK--GDIDTPGEYFSH-------PRWYHALITTL- 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEE-----EECCC--CcccCCccccCC-------HHHHHHHHHHH-
Confidence 6999999999999999999986522 1122222 11222 279999986442 11222322222
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|++++|++.+.... .... .+.+. + ..+|+++++||+|+.
T Consensus 63 -~~ad~il~v~d~~~~~s-~~~~----~~~~~-~--~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 63 -QDVDMLIYVHGANDPES-RLPA----GLLDI-G--VSKRQIAVISKTDMP 104 (158)
T ss_pred -hcCCEEEEEEeCCCccc-ccCH----HHHhc-c--CCCCeEEEEEccccC
Confidence 36799999977654321 1222 22222 1 246899999999974
No 181
>PRK13796 GTPase YqeH; Provisional
Probab=98.89 E-value=4.4e-09 Score=116.28 Aligned_cols=136 Identities=20% Similarity=0.098 Sum_probs=82.1
Q ss_pred hhchHhhccccc-EEEEEEeccCCCCCCCHHHHHHHHhcc------ccccccccc---hhHHH----H-hhcch--hHHH
Q 004520 44 MMDPLVKIEDLQ-VKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAGE---SDMKM----V-NLRSD--RTRA 106 (747)
Q Consensus 44 ek~~~~kle~~d-VillvLDaR~gls~~d~~vaqvL~rl~------lad~~~~~~---~~~~~----~-~lg~~--~~~~ 106 (747)
-+++.+.+...+ ++++++|+.....+..+.+.++..... |+|...... ....+ . .+++. ....
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 345677777766 999999999877777777777653222 555443211 00001 0 11111 1111
Q ss_pred HHhhcccCCC-------CCCCCCeEEEEEcCCCCcHHHHHHHHhCCC-----CceecCCCCceeeEEEEEeEEcCeEEEE
Q 004520 107 IAREQEATGI-------PDLDFSIRILVLGKTGVGKSATINSIFDQT-----KTETDAFQPATDCIREVKGSVNGIKVTF 174 (747)
Q Consensus 107 iA~~~~~~~~-------~~~~~~lrIlVVGk~GvGKSSLINsLlG~~-----~a~vs~~~~tT~~~~~~~~~~~G~~v~L 174 (747)
+++.. ..+. .......++++||.||||||||||+|++.. ...++..+++|++...+... ....+
T Consensus 139 vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~---~~~~l 214 (365)
T PRK13796 139 ISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD---DGSFL 214 (365)
T ss_pred EECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC---CCcEE
Confidence 11111 1111 011123579999999999999999998542 34468899999998877642 22489
Q ss_pred EeCCCCCCc
Q 004520 175 IDTPGFLPS 183 (747)
Q Consensus 175 IDTPGl~~~ 183 (747)
+||||+...
T Consensus 215 ~DTPGi~~~ 223 (365)
T PRK13796 215 YDTPGIIHR 223 (365)
T ss_pred EECCCcccc
Confidence 999999744
No 182
>PRK00007 elongation factor G; Reviewed
Probab=98.88 E-value=1.6e-08 Score=120.28 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh---CCCCce--ec------------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCccc
Q 004520 123 IRILVLGKTGVGKSATINSIF---DQTKTE--TD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 185 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLl---G~~~a~--vs------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~ 185 (747)
.+|+|+|++|+|||||+|+|+ |..... +. ...+.|.+.....+.+.+.++.||||||..+.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-- 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-- 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH--
Confidence 489999999999999999997 432111 11 13456777777778889999999999997432
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 186 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 186 ~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..++.+.+. .+|++++|++.... ...++..++..+.+. +.|.|+++||+|...
T Consensus 89 ---------~~ev~~al~--~~D~~vlVvda~~g-~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ---------TIEVERSLR--VLDGAVAVFDAVGG-VEPQSETVWRQADKY-----KVPRIAFVNKMDRTG 141 (693)
T ss_pred ---------HHHHHHHHH--HcCEEEEEEECCCC-cchhhHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 112333342 45899999765422 223566777776664 579999999999873
No 183
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.88 E-value=2.3e-08 Score=101.58 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeE--EcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS--VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~--~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
+|+++|.+|||||||++.|.+.....+ .++++.....+... ..+..+.|+||||.... . .....+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~----~~~~~~ 68 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-------R----DKLLET 68 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH-------H----HHHHHH
Confidence 589999999999999999998653322 12222212211111 23678999999997421 1 122223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC----CcccccEEEEEeccCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG----TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG----~~i~k~vIIVLTK~D~l~ 255 (747)
++.. +++++||++...... .-..+.+.+.+.+. .....|++||.||+|+..
T Consensus 69 ~~~~-~~~vV~VvD~~~~~~--~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 69 LKNS-AKGIVFVVDSATFQK--NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred Hhcc-CCEEEEEEECccchh--HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 3221 489999977655421 12233334333321 112589999999999874
No 184
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.88 E-value=2.4e-09 Score=112.15 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCC-------CceeeEEEEEeEEcCeEEEEEeCCCCCCcccchh--hhhHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV--KRNRK 193 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~-------~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~--~~~~~ 193 (747)
-.++++|.||||||||||+|++.....++.+. .||+....+.. .+| .||||||+......+. ..-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l~~~~~~~~~~ 196 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGLWHLEPEQLTQ 196 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCCCCCCHHHHHH
Confidence 37899999999999999999998777665433 37888877776 233 8999999998765321 12233
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q 004520 194 IMLSVKKFIRRSPPDIVLYF 213 (747)
Q Consensus 194 il~~ik~~I~~~~~DvVL~V 213 (747)
...++..+...|++.=|...
T Consensus 197 ~f~e~~~~~~~C~f~~C~H~ 216 (245)
T TIGR00157 197 GFVEFRDYLGECKFRDCLHQ 216 (245)
T ss_pred hCHHHHHHhCCCCCCCCccC
Confidence 44555666666665544444
No 185
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.87 E-value=1.5e-08 Score=104.11 Aligned_cols=117 Identities=19% Similarity=0.042 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEE--cCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~--~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+++|.+|||||||+|.+++.... ...+.++. .+.......+ ....+.++||||.... ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~----------~~~--- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW----------TED--- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH----------HHh---
Confidence 48999999999999999999765432 11111111 1222222233 3467899999998510 001
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.+.. ..+|++++|.+++....-..-..++..+.+. ......|+|+|.||+|+..
T Consensus 67 ~~~~-~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 67 SCMQ-YQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred HHhh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhccc
Confidence 1221 1679999998765432100112334444332 1123689999999999864
No 186
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.86 E-value=3.1e-08 Score=105.16 Aligned_cols=112 Identities=8% Similarity=0.046 Sum_probs=69.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcee--c-------------CCC------CceeeEEEEEeEEcCeEEEEEeCCCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTET--D-------------AFQ------PATDCIREVKGSVNGIKVTFIDTPGFLP 182 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~v--s-------------~~~------~tT~~~~~~~~~~~G~~v~LIDTPGl~~ 182 (747)
+|+|+|++|+|||||+|+|+....... + ++. +.|-......+.+.+.++.|+||||..+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999985422211 1 111 1122233445677899999999999753
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
. ... ...+++ .+|++++|++.... .......+++.... ...|+++++||+|..
T Consensus 84 f-------~~~----~~~~l~--~aD~~IlVvda~~g-~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~ 136 (267)
T cd04169 84 F-------SED----TYRTLT--AVDSAVMVIDAAKG-VEPQTRKLFEVCRL-----RGIPIITFINKLDRE 136 (267)
T ss_pred H-------HHH----HHHHHH--HCCEEEEEEECCCC-ccHHHHHHHHHHHh-----cCCCEEEEEECCccC
Confidence 2 111 222332 46999999765432 11122233333322 257999999999975
No 187
>PRK12736 elongation factor Tu; Reviewed
Probab=98.86 E-value=3e-08 Score=110.64 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=78.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCC------Cceec---------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCC
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFDQT------KTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLP 182 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG~~------~a~vs---------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~ 182 (747)
.....++|+++|++++|||||+++|++.. .+... ...+.|.+.....+..++.++.||||||..
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~- 86 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA- 86 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH-
Confidence 34567999999999999999999998731 11100 134567777666666678899999999952
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCccccc-EEEEEeccCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 254 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~-vIIVLTK~D~l 254 (747)
+....+...+ ..+|++++|++.+.. ....+...+..+... +.| +|+++||+|+.
T Consensus 87 ----------~f~~~~~~~~--~~~d~~llVvd~~~g-~~~~t~~~~~~~~~~-----g~~~~IvviNK~D~~ 141 (394)
T PRK12736 87 ----------DYVKNMITGA--AQMDGAILVVAATDG-PMPQTREHILLARQV-----GVPYLVVFLNKVDLV 141 (394)
T ss_pred ----------HHHHHHHHHH--hhCCEEEEEEECCCC-CchhHHHHHHHHHHc-----CCCEEEEEEEecCCc
Confidence 1112222222 357999999876532 112455666655543 456 67899999986
No 188
>PRK00049 elongation factor Tu; Reviewed
Probab=98.86 E-value=2.1e-08 Score=111.98 Aligned_cols=118 Identities=11% Similarity=0.037 Sum_probs=79.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCC------Ccee---------cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCC
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFDQT------KTET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLP 182 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG~~------~a~v---------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~ 182 (747)
.....++|+++|.+++|||||+++|++.. .... ....+.|.+.....+..++.++.|+||||..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~- 86 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA- 86 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH-
Confidence 34567999999999999999999998731 1111 0134567777666666678899999999973
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEE-EEEeccCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI-LVMTHSSST 254 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vI-IVLTK~D~l 254 (747)
+....+...+ ..+|++++|++.... ....+...+..+... ..|.+ +++||+|+.
T Consensus 87 ----------~f~~~~~~~~--~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~-----g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 87 ----------DYVKNMITGA--AQMDGAILVVSAADG-PMPQTREHILLARQV-----GVPYIVVFLNKCDMV 141 (396)
T ss_pred ----------HHHHHHHhhh--ccCCEEEEEEECCCC-CchHHHHHHHHHHHc-----CCCEEEEEEeecCCc
Confidence 1222232333 468999999776532 123455666665543 46765 689999986
No 189
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.86 E-value=3.8e-08 Score=109.69 Aligned_cols=119 Identities=11% Similarity=0.007 Sum_probs=77.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhC------CCCceec---------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCC
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFD------QTKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLP 182 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG------~~~a~vs---------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~ 182 (747)
.....++|+++|..++|||||+++|++ +..+... ...+.|.+.....+...+.++.|+||||..+
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 345679999999999999999999984 2222111 1256777776666666788999999999732
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccE-EEEEeccCCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT-ILVMTHSSSTL 255 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~v-IIVLTK~D~l~ 255 (747)
. ...+...+ ..+|++++|++.+.. ....+.+.+..+... +.|. |+++||+|+..
T Consensus 88 f-----------~~~~~~~~--~~~D~~ilVvda~~g-~~~qt~e~l~~~~~~-----gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 Y-----------VKNMITGA--AQMDGAILVVSATDG-PMPQTREHILLARQV-----GVPYIVVFLNKCDMVD 142 (394)
T ss_pred H-----------HHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCEEEEEEEecccCC
Confidence 1 12222222 357999999776532 112344555555433 3555 46899999863
No 190
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.85 E-value=2.9e-08 Score=101.79 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc---------------------------ee---cCCCCceeeEEEEEeEEcCeEEE
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKT---------------------------ET---DAFQPATDCIREVKGSVNGIKVT 173 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a---------------------------~v---s~~~~tT~~~~~~~~~~~G~~v~ 173 (747)
+|+++|.+|+|||||+.+|+..... .. ....++|.+.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999632110 00 11245677777888888999999
Q ss_pred EEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc------cCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 174 FIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI------SMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 174 LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~------t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
|+||||..+. ...+...+ ..+|++++|++.... .........+... ..++ .+|+|+|
T Consensus 81 liDtpG~~~~-----------~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiiv 143 (219)
T cd01883 81 ILDAPGHRDF-----------VPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVA 143 (219)
T ss_pred EEECCChHHH-----------HHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEE
Confidence 9999997321 11122222 357999999776542 1111233333333 2222 2689999
Q ss_pred EeccCCCC
Q 004520 248 MTHSSSTL 255 (747)
Q Consensus 248 LTK~D~l~ 255 (747)
+||+|+..
T Consensus 144 vNK~Dl~~ 151 (219)
T cd01883 144 VNKMDDVT 151 (219)
T ss_pred EEcccccc
Confidence 99999874
No 191
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.85 E-value=2.4e-08 Score=97.96 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=67.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
+|+++|.+|||||||+|++++.... ..+.+++. +.........| .++.|+||||.... .... ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF--------KCIA---ST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HhhH---HH
Confidence 7999999999999999999986432 12233322 33323334444 56899999997321 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|.+++....-.....++..+.+..... ..|+++|.||+|+.
T Consensus 69 ~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~ 119 (170)
T cd04108 69 YY--RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLS 119 (170)
T ss_pred Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcC
Confidence 22 36799999977643211001122333333221111 24689999999975
No 192
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.85 E-value=3e-08 Score=96.04 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|+|||||+|++.+..... ...+++.........+++. .+.++||||-..... +..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR------------LRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc------------ccc
Confidence 589999999999999999999765332 2233333333333444554 467999999743211 000
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~--~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
......|++++|.+...... ..+. .++..+... ....|+++|.||+|+.
T Consensus 67 -~~~~~~~~~ilv~~~~~~~s-~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~ 117 (174)
T cd04135 67 -LSYPMTDVFLICFSVVNPAS-FQNVKEEWVPELKEY---APNVPYLLVGTQIDLR 117 (174)
T ss_pred -ccCCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEeEchhhh
Confidence 11236799999976653321 1111 233344332 2358999999999975
No 193
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.85 E-value=1.1e-08 Score=98.95 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=68.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
|+|+|.+|||||||+|++++..... ...+++..........++. .+.++||||..... .+.. .++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~---~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD--------RLRP---LSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc--------hhch---hhc
Confidence 6899999999999999999865322 1223333322233344554 57899999964321 1111 112
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~--~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+|++++|.+++.... ..+. .++..+.+.. ...|+|+|.||+|+..
T Consensus 68 --~~~d~~ilv~d~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 116 (174)
T smart00174 68 --PDTDVFLICFSVDSPAS-FENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE 116 (174)
T ss_pred --CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence 36799999987754321 1111 2334444332 2589999999999864
No 194
>PLN03110 Rab GTPase; Provisional
Probab=98.85 E-value=2.5e-08 Score=101.98 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..++|+++|.+|||||||++++++....... .+....+.......+++ ..+.|+||||.... . ...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~-~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~--------~---~~~ 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY--------R---AIT 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeEEEEEEEEEECCEEEEEEEEECCCcHHH--------H---HHH
Confidence 4589999999999999999999986543221 11222233333344444 47889999995211 1 122
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..++ ..++++|+|.++.....-..-..++..+.... ....|+++|.||+|+.
T Consensus 79 ~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 79 SAYY--RGAVGALLVYDITKRQTFDNVQRWLRELRDHA--DSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHh--CCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEEChhcc
Confidence 2333 35799999977653321001112333333332 2257999999999975
No 195
>PRK12739 elongation factor G; Reviewed
Probab=98.85 E-value=2e-08 Score=119.43 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=80.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCc-----eec------------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcc
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKT-----ETD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 184 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a-----~vs------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~ 184 (747)
-.+|+|+|++|+|||||+|+|+..... .+. ...+.|.+.....+.+++.++.|+||||..+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 458999999999999999999753111 111 13456777777778889999999999997431
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 185 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 185 ~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..++.+.+. .+|++++|++.... ....+..++..+.+. +.|.|+++||+|...
T Consensus 87 ----------~~e~~~al~--~~D~~ilVvDa~~g-~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 ----------TIEVERSLR--VLDGAVAVFDAVSG-VEPQSETVWRQADKY-----GVPRIVFVNKMDRIG 139 (691)
T ss_pred ----------HHHHHHHHH--HhCeEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 123344443 35999999765432 223456666666554 579999999999873
No 196
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.84 E-value=3.2e-08 Score=96.36 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=68.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhc
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 204 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~ 204 (747)
|+++|.+|||||||+|++.+.... ....++. ..........+..+.++||||-... ..... .++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~-g~~~~~i~~~~~~l~i~Dt~G~~~~--------~~~~~---~~~-- 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTT-GFNSVAIPTQDAIMELLEIGGSQNL--------RKYWK---RYL-- 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccC-CcceEEEeeCCeEEEEEECCCCcch--------hHHHH---HHH--
Confidence 799999999999999999976432 1222222 2222334456788999999996432 11111 233
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 205 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 205 ~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|+++||++...... -......+.+........|+++|.||.|+.
T Consensus 66 ~~ad~ii~V~D~t~~~s---~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 66 SGSQGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred hhCCEEEEEEECCCHHH---HHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 35699999977654321 112223334433222468999999999975
No 197
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.84 E-value=2.5e-08 Score=118.72 Aligned_cols=114 Identities=16% Similarity=0.040 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCce-----ecC------------CCCceeeEEEEEeEEcCeEEEEEeCCCCCCccc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTE-----TDA------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 185 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~-----vs~------------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~ 185 (747)
-+|+|+|++|+|||||+|+|+...... +.+ ..+.|.+.....+.+.+.++.|+||||..+..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~- 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT- 89 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh-
Confidence 489999999999999999997532221 111 23566677777888899999999999996531
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 186 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 186 ~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
. .+.+.++ .+|++++|++.... ....+..+++.+.+. ..|+++|+||+|+..
T Consensus 90 ------~----~~~~~l~--~~D~~ilVvda~~g-~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 90 ------V----EVERSLR--VLDGAVAVLDAVGG-VQPQSETVWRQANRY-----EVPRIAFVNKMDKTG 141 (689)
T ss_pred ------H----HHHHHHH--HhCEEEEEEeCCCC-CChhHHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 1 1223332 45999999765432 122445566655443 579999999999873
No 198
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.84 E-value=3.4e-08 Score=100.66 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
.++|+|+|.+|||||||+|.+++........ +..+.+.......+ .+ ..+.|+||||.... .. ..
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~---~~ 69 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF--------RS---IT 69 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhH--------HH---HH
Confidence 4799999999999999999999866433321 11122332222333 23 47889999996311 11 11
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..++ ..+|++++|.+++....-..-..++..+.+..+. ...+++||.||+|+..
T Consensus 70 ~~~~--~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 70 RSYY--RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred HHHh--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 2233 3569999997765432100011233333333222 2356789999999864
No 199
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.83 E-value=6.9e-08 Score=95.97 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=70.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.++|+++|.+|||||||++.+....... ..+ |...........+..+.++||||-.. .... ...+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~p-t~g~~~~~~~~~~~~~~i~D~~Gq~~--------~~~~---~~~~ 81 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT---TIP-TIGFNVETVEYKNISFTVWDVGGQDK--------IRPL---WRHY 81 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc---ccC-CcceeEEEEEECCEEEEEEECCCCHH--------HHHH---HHHH
Confidence 4899999999999999999998543322 222 22222233455788999999999521 1111 1223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
+ ..+|++++|.+...... -..+...+.+.+... -..|++||.||.|+.
T Consensus 82 ~--~~a~~iI~V~D~s~~~s---~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 82 F--QNTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred h--ccCCEEEEEEeCCcHHH---HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 3 35799999977653221 112333444443221 147999999999974
No 200
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.82 E-value=3.6e-08 Score=101.19 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=68.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEE--cCeEEEEEeCCCCCCcccchhhhhHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIML 196 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~--~G~~v~LIDTPGl~~~~~~~~~~~~~il~ 196 (747)
...++|+++|.+|||||||+++++....... ..++. .+........ ....+.++||||.... ..+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCc--cCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------hhhhH
Confidence 5578999999999999999999875432211 11211 1222222222 2368899999997432 11111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 197 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 197 ~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+. ..+|++|+|.+++....-..-..+++.+.+.. -..|+++|.||+|+.
T Consensus 81 ---~~~--~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 130 (219)
T PLN03071 81 ---GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (219)
T ss_pred ---HHc--ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhh
Confidence 122 35789999977664321001112333443331 257999999999975
No 201
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.82 E-value=3.5e-08 Score=103.52 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+|.+++..... .+.+++.+.......++| ..+.|+||+|.... ..+ .. .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~--------~~~-~~--~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF--------PAM-RR--L 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhh--------hHH-HH--H
Confidence 479999999999999999998754322 334555444444445556 56789999996432 111 11 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh-------CCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF-------GTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~f-------G~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++|+|.+++....-..-..+++.|.+.. ......|+|+|.||+|+..
T Consensus 68 ~~--~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 SI--LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred Hh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 12 35799999987764321001123334443321 0123579999999999863
No 202
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.81 E-value=3.6e-08 Score=115.20 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcee--cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|+|||||+|+|+|...... ....+.|.++....+...+..+.||||||.. .....+..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-----------~f~~~~~~ 69 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-----------KFISNAIA 69 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-----------HHHHHHHh
Confidence 4799999999999999999998642211 1224566666655667778899999999952 11122222
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCccccc-EEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~-vIIVLTK~D~l~ 255 (747)
.+ ..+|++++|++.+.... .+....+..+. .+ ..+ +|||+||+|+..
T Consensus 70 g~--~~aD~aILVVDa~~G~~-~qT~ehl~il~-~l----gi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 70 GG--GGIDAALLVVDADEGVM-TQTGEHLAVLD-LL----GIPHTIVVITKADRVN 117 (581)
T ss_pred hh--ccCCEEEEEEECCCCCc-HHHHHHHHHHH-Hc----CCCeEEEEEECCCCCC
Confidence 22 36899999987754211 12333444333 22 345 999999999863
No 203
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.81 E-value=8.3e-08 Score=93.91 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceee-EEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~-~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..++|+++|.+|||||||+|++++.... +..+.+++.. ........+| ..+.++||+|-..... ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~-- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL--------LN-- 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc--------cc--
Confidence 4589999999999999999999986543 2334454432 2222334455 4678889998643311 00
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..++ ..+|++|+|.+.+... ....+...+. .+......|+++|.||+|+.
T Consensus 72 -~~~~--~~~d~~llv~d~~~~~---s~~~~~~~~~-~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 72 -DAEL--AACDVACLVYDSSDPK---SFSYCAEVYK-KYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred -hhhh--hcCCEEEEEEeCCCHH---HHHHHHHHHH-HhccCCCCeEEEEEEccccc
Confidence 1112 3579999997764322 1112223332 22222258999999999985
No 204
>PRK09866 hypothetical protein; Provisional
Probab=98.81 E-value=4.4e-08 Score=113.53 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=47.9
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
.+++|+||||+..+... ..++.+ .+.+ ..+|+||||++.... ....|..+++.+.+. ++ ..|+++|+|
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M----~eqL--~eADvVLFVVDat~~-~s~~DeeIlk~Lkk~-~K--~~PVILVVN 297 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKML----NQQL--ARASAVLAVLDYTQL-KSISDEEVREAILAV-GQ--SVPLYVLVN 297 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHH----HHHH--hhCCEEEEEEeCCCC-CChhHHHHHHHHHhc-CC--CCCEEEEEE
Confidence 47899999999865211 112222 2234 357999999876542 123577788777664 11 149999999
Q ss_pred ccCCC
Q 004520 250 HSSST 254 (747)
Q Consensus 250 K~D~l 254 (747)
|+|..
T Consensus 298 KIDl~ 302 (741)
T PRK09866 298 KFDQQ 302 (741)
T ss_pred cccCC
Confidence 99986
No 205
>PLN03126 Elongation factor Tu; Provisional
Probab=98.81 E-value=6e-08 Score=110.87 Aligned_cols=118 Identities=10% Similarity=0.005 Sum_probs=76.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcee---------------cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCc
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTET---------------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 183 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v---------------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~ 183 (747)
....++|+++|.+++|||||+|+|++...... ....+.|.+.....+...+..+.||||||..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence 35579999999999999999999986322111 11234555655555667888999999999732
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCccccc-EEEEEeccCCCC
Q 004520 184 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 255 (747)
Q Consensus 184 ~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~-vIIVLTK~D~l~ 255 (747)
....+...+ ..+|++++|++..... .....+.+..+... +.| +|+++||+|+..
T Consensus 157 ----------f~~~~~~g~--~~aD~ailVVda~~G~-~~qt~e~~~~~~~~-----gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 ----------YVKNMITGA--AQMDGAILVVSGADGP-MPQTKEHILLAKQV-----GVPNMVVFLNKQDQVD 211 (478)
T ss_pred ----------HHHHHHHHH--hhCCEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCeEEEEEecccccC
Confidence 222222223 3579999997655321 12344555544433 355 788999999863
No 206
>PLN03108 Rab family protein; Provisional
Probab=98.81 E-value=4.6e-08 Score=99.44 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..++|+|+|.+|||||||+|.+++........ +..+.+.......+.+ ..+.++||||.... .. ..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~-~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~--------~~---~~ 72 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESF--------RS---IT 72 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCccceEEEEEEEECCEEEEEEEEeCCCcHHH--------HH---HH
Confidence 35899999999999999999999865433221 1111222222333444 45789999996321 11 11
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..++ ..+|++++|.++..... ... ...+..+.... ....|+++|.||+|+..
T Consensus 73 ~~~~--~~ad~~vlv~D~~~~~s-~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 73 RSYY--RGAAGALLVYDITRRET-FNHLASWLEDARQHA--NANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHh--ccCCEEEEEEECCcHHH-HHHHHHHHHHHHHhc--CCCCcEEEEEECccCcc
Confidence 2223 35799999977654321 011 12233333322 12579999999999863
No 207
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.81 E-value=6.9e-08 Score=110.29 Aligned_cols=117 Identities=18% Similarity=0.087 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecC--------------------------------CCCceeeEEEEEeEE
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA--------------------------------FQPATDCIREVKGSV 167 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~--------------------------------~~~tT~~~~~~~~~~ 167 (747)
...++|+++|++++|||||++.|+......... ..+.|.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 456999999999999999999998654332210 012344555555667
Q ss_pred cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 168 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 168 ~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
++.++.||||||..+ ... .+...+ ..+|++++|++....- ...+...+..+ ..+| .+++|+|
T Consensus 105 ~~~~i~~iDTPGh~~-------f~~----~~~~~l--~~aD~allVVDa~~G~-~~qt~~~~~l~-~~lg---~~~iIvv 166 (474)
T PRK05124 105 EKRKFIIADTPGHEQ-------YTR----NMATGA--STCDLAILLIDARKGV-LDQTRRHSFIA-TLLG---IKHLVVA 166 (474)
T ss_pred CCcEEEEEECCCcHH-------HHH----HHHHHH--hhCCEEEEEEECCCCc-cccchHHHHHH-HHhC---CCceEEE
Confidence 788999999999421 111 222222 4679999997764321 12233333333 3333 2588999
Q ss_pred EeccCCC
Q 004520 248 MTHSSST 254 (747)
Q Consensus 248 LTK~D~l 254 (747)
+||+|+.
T Consensus 167 vNKiD~~ 173 (474)
T PRK05124 167 VNKMDLV 173 (474)
T ss_pred EEeeccc
Confidence 9999986
No 208
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.80 E-value=5.5e-08 Score=95.96 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||++++...... ..+.+++..........++ ..+.|+||||-.... .+. ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~---~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD--------RLR---PL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh--------hhh---hh
Confidence 68999999999999999999975431 2344554443333445556 567899999974321 111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~--~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++++|.+++.... ..+. .++..+.... -..|+|+|.||+|+.
T Consensus 69 ~~--~~a~~~ilv~d~~~~~s-~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~ 118 (175)
T cd01874 69 SY--PQTDVFLVCFSVVSPSS-FENVKEKWVPEITHHC---PKTPFLLVGTQIDLR 118 (175)
T ss_pred hc--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEECHhhh
Confidence 22 35799999987654321 1111 2333343321 247999999999975
No 209
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.80 E-value=5.3e-08 Score=98.60 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-c-eecCCCCceeeEEEEEeEE---------------------------cC----
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTK-T-ETDAFQPATDCIREVKGSV---------------------------NG---- 169 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~-a-~vs~~~~tT~~~~~~~~~~---------------------------~G---- 169 (747)
++|+++|+.|+|||||+.+|.+... . ......+.|-.+......+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999987521 1 0000111111111111111 13
Q ss_pred --eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 170 --IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 170 --~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
..+.||||||.. .....+...+ ..+|++++|++.+...........+..+.. .+ .+|+|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiiv 143 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIV 143 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEE
Confidence 789999999941 1222333333 357999999877642111233344544432 22 2579999
Q ss_pred EeccCCC
Q 004520 248 MTHSSST 254 (747)
Q Consensus 248 LTK~D~l 254 (747)
+||+|+.
T Consensus 144 vNK~Dl~ 150 (203)
T cd01888 144 QNKIDLV 150 (203)
T ss_pred EEchhcc
Confidence 9999986
No 210
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.80 E-value=8.3e-08 Score=92.78 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||++.+++...... ..+....+.........+ ..+.++||||.... ... ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~---~~~ 68 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY--------QTI---TKQ 68 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH--------Hhh---HHH
Confidence 4799999999999999999997654322 111112223333344455 46789999995321 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-cccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~i~k~vIIVLTK~D~l~ 255 (747)
+. ..+|++++|.+++.... -..+..++.+.... ....|+++|.||.|+..
T Consensus 69 ~~--~~~~~~i~v~d~~~~~s---f~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 69 YY--RRAQGIFLVYDISSERS---YQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred Hh--cCCcEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 33 36799999987764321 11222223322111 12479999999999863
No 211
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.78 E-value=1.1e-08 Score=109.69 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCC-------CCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc--hhhhhHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR--NVKRNRK 193 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~-------~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~--~~~~~~~ 193 (747)
-.++++|++|||||||||+|+|.....++.. ..+|+....+.....+ .++||||+.+.... .......
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~~~~~~~~~~~~ 238 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFGLLHIDPEELAH 238 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccCCccCCHHHHHH
Confidence 5799999999999999999999876665432 2366666666553333 79999999764311 1123334
Q ss_pred HHHHHHHHHhcCCCC
Q 004520 194 IMLSVKKFIRRSPPD 208 (747)
Q Consensus 194 il~~ik~~I~~~~~D 208 (747)
.+.++......|++.
T Consensus 239 ~f~~~~~~~~~C~F~ 253 (287)
T cd01854 239 YFPEFRELAGQCKFR 253 (287)
T ss_pred HhHHHHHHhCCCCCC
Confidence 445555555555543
No 212
>PRK12288 GTPase RsgA; Reviewed
Probab=98.77 E-value=1.7e-08 Score=111.08 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=60.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCC-------ceeeEEEEEeEEcCeEEEEEeCCCCCCcccch--hhhhHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNRKI 194 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~-------tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~--~~~~~~i 194 (747)
.++++|.||||||||||+|+++....++.++. ||+....+....+| .||||||+..-...+ ...-...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l~~~~~~~l~~~ 283 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGLWHLEPEQVTQG 283 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccCCCCCHHHHHHh
Confidence 47999999999999999999998888876654 67777766654333 699999999876542 1223344
Q ss_pred HHHHHHHHhcCCCCEEEE
Q 004520 195 MLSVKKFIRRSPPDIVLY 212 (747)
Q Consensus 195 l~~ik~~I~~~~~DvVL~ 212 (747)
+.++..+...|++.=|..
T Consensus 284 F~ei~~~~~~CrF~dC~H 301 (347)
T PRK12288 284 FVEFRDYLGTCKFRDCKH 301 (347)
T ss_pred hHHHHHHhcCCCCCCCcc
Confidence 455555555565443333
No 213
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.77 E-value=4.8e-08 Score=95.28 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|+|||||++++++.... ....+++.+.......+++ ..+.|+||||..... .+. ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~---~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD--------KLR---PL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhc--------ccc---cc
Confidence 58999999999999999999875422 2344555444444445555 467889999974321 010 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|.++..... ... ..++..+.... ...|+++|.||+|+..
T Consensus 68 ~~--~~a~~~i~v~d~~~~~s-f~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 118 (173)
T cd04130 68 CY--PDTDVFLLCFSVVNPSS-FQNISEKWIPEIRKHN---PKAPIILVGTQADLRT 118 (173)
T ss_pred cc--CCCcEEEEEEECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEeeChhhcc
Confidence 22 36799999976653321 111 12333443321 2479999999999863
No 214
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.77 E-value=5.3e-08 Score=100.80 Aligned_cols=114 Identities=17% Similarity=0.056 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCce------e--c----C-CCCcee------------------------eEEEEEeE
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTE------T--D----A-FQPATD------------------------CIREVKGS 166 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~------v--s----~-~~~tT~------------------------~~~~~~~~ 166 (747)
+|+++|..++|||||++.+....... . . . ..+-|. .......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999997421100 0 0 0 001111 00001224
Q ss_pred EcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEE
Q 004520 167 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 246 (747)
Q Consensus 167 ~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vII 246 (747)
..++.+.||||||..+. .....+.+....+|++++|++.+..- ...+..++..+... ..|+|+
T Consensus 81 ~~~~~i~liDtpG~~~~-----------~~~~~~~~~~~~~D~~llVvda~~g~-~~~d~~~l~~l~~~-----~ip~iv 143 (224)
T cd04165 81 KSSKLVTFIDLAGHERY-----------LKTTLFGLTGYAPDYAMLVVAANAGI-IGMTKEHLGLALAL-----NIPVFV 143 (224)
T ss_pred eCCcEEEEEECCCcHHH-----------HHHHHHhhcccCCCEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCEEE
Confidence 46789999999997321 12222333223689999998765321 23566777777654 578999
Q ss_pred EEeccCCC
Q 004520 247 VMTHSSST 254 (747)
Q Consensus 247 VLTK~D~l 254 (747)
|+||+|+.
T Consensus 144 vvNK~D~~ 151 (224)
T cd04165 144 VVTKIDLA 151 (224)
T ss_pred EEECcccc
Confidence 99999986
No 215
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.77 E-value=4.9e-08 Score=117.03 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=79.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..++.+|+|+|.+|+|||||+|+|.+.... .+...+.|.....+.+.+.+..+.|+||||..+.. .. .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~--------~m---~ 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT--------AM---R 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch--------hH---H
Confidence 456789999999999999999999875543 33445667777667777888999999999975431 11 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+.. ..+|++|+|++.+.... ......+..+.. ...|+||++||+|+.
T Consensus 355 ~rga--~~aDiaILVVdAddGv~-~qT~e~i~~a~~-----~~vPiIVviNKiDl~ 402 (787)
T PRK05306 355 ARGA--QVTDIVVLVVAADDGVM-PQTIEAINHAKA-----AGVPIIVAINKIDKP 402 (787)
T ss_pred Hhhh--hhCCEEEEEEECCCCCC-HhHHHHHHHHHh-----cCCcEEEEEECcccc
Confidence 1222 34699999987653211 123334433322 257999999999985
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.77 E-value=6.2e-08 Score=98.62 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceec---------CC---------CCceeeEEEEEeEE-----cCeEEEEEeCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETD---------AF---------QPATDCIREVKGSV-----NGIKVTFIDTPGF 180 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs---------~~---------~~tT~~~~~~~~~~-----~G~~v~LIDTPGl 180 (747)
+|+|+|.+|+|||||+++|++....... .+ .+.|-........+ ....+.|+||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875433210 00 11122222222222 2367899999998
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 181 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 181 ~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
.+. . .....++ ..+|++++|++...... .....+++.+.. ...|.++|+||+|....
T Consensus 82 ~~f-------~----~~~~~~~--~~aD~~llVvD~~~~~~-~~~~~~~~~~~~-----~~~p~iiviNK~D~~~~ 138 (213)
T cd04167 82 VNF-------M----DEVAAAL--RLSDGVVLVVDVVEGVT-SNTERLIRHAIL-----EGLPIVLVINKIDRLIL 138 (213)
T ss_pred cch-------H----HHHHHHH--HhCCEEEEEEECCCCCC-HHHHHHHHHHHH-----cCCCEEEEEECcccCcc
Confidence 543 1 1122233 24699999976643221 122233333322 14799999999998743
No 217
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.77 E-value=4.7e-08 Score=94.73 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.+|+++|.+|||||||++++.+..... ...+++.........+++. .+.++||||..... ... ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~---~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD--------RLR---PL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhh--------hcc---cc
Confidence 589999999999999999999854322 1223322222223344443 67899999974321 000 01
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ...|++++|.+++.... ..+ ..++..+.... ...|+++|.||+|+..
T Consensus 69 ~~--~~~d~~i~v~~~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 119 (175)
T cd01870 69 SY--PDTDVILMCFSIDSPDS-LENIPEKWTPEVKHFC---PNVPIILVGNKKDLRN 119 (175)
T ss_pred cc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEeeChhccc
Confidence 12 46799998877764321 011 11223333221 2579999999999764
No 218
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.76 E-value=8.1e-08 Score=107.65 Aligned_cols=115 Identities=18% Similarity=0.086 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceec--------------------------------CCCCceeeEEEEEeEEcCe
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETD--------------------------------AFQPATDCIREVKGSVNGI 170 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs--------------------------------~~~~tT~~~~~~~~~~~G~ 170 (747)
+||+++|+.++|||||++.|+........ ...+.|.+.....+.+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754322110 0123455666666677889
Q ss_pred EEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEec
Q 004520 171 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 250 (747)
Q Consensus 171 ~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK 250 (747)
++.||||||..+ ....+...+ ..+|++++|++....- ..++.+.+..+.. +| .+++|+++||
T Consensus 81 ~~~liDtPGh~~-----------f~~~~~~~~--~~aD~allVVda~~G~-~~qt~~~~~~~~~-~~---~~~iivviNK 142 (406)
T TIGR02034 81 KFIVADTPGHEQ-----------YTRNMATGA--STADLAVLLVDARKGV-LEQTRRHSYIASL-LG---IRHVVLAVNK 142 (406)
T ss_pred EEEEEeCCCHHH-----------HHHHHHHHH--hhCCEEEEEEECCCCC-ccccHHHHHHHHH-cC---CCcEEEEEEe
Confidence 999999999532 111222222 3679999997764321 1234444444433 33 2478999999
Q ss_pred cCCCC
Q 004520 251 SSSTL 255 (747)
Q Consensus 251 ~D~l~ 255 (747)
+|...
T Consensus 143 ~D~~~ 147 (406)
T TIGR02034 143 MDLVD 147 (406)
T ss_pred ccccc
Confidence 99863
No 219
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.76 E-value=8.4e-08 Score=99.38 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=67.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCC---------------CceeeEEEEEeEEc----------CeEEEEEeCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQ---------------PATDCIREVKGSVN----------GIKVTFIDTP 178 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~---------------~tT~~~~~~~~~~~----------G~~v~LIDTP 178 (747)
+|+++|..++|||||+++|+........... +.|-....+...+. +..+.|+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999999865432211111 12222222222222 6789999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 179 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 179 Gl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
|..+. .. .....+ ..+|++++|++..... ......+++...+. ..|+|+|+||+|+.
T Consensus 82 G~~~f-------~~----~~~~~l--~~aD~~ilVvD~~~g~-~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDF-------SS----EVTAAL--RLCDGALVVVDAVEGV-CVQTETVLRQALKE-----RVKPVLVINKIDRL 138 (222)
T ss_pred Ccccc-------HH----HHHHHH--HhcCeeEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 98643 11 222333 2469999997664321 11333444444332 46899999999986
No 220
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.74 E-value=8e-08 Score=112.31 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe-EEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..+.+|+++|.+|+|||||+|+|.+..... ...++.|.+...+...+.+. .+.|+||||..... .. .
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------~~---r 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------SM---R 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh--------hH---H
Confidence 456799999999999999999999865443 33456677766666666544 89999999974321 11 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+.. ..+|++++|++.+.... .+....+..+.. ...|+|+++||+|+.
T Consensus 153 ~rga--~~aDiaILVVda~dgv~-~qT~e~i~~~~~-----~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 153 ARGA--KVTDIVVLVVAADDGVM-PQTIEAISHAKA-----ANVPIIVAINKIDKP 200 (587)
T ss_pred Hhhh--ccCCEEEEEEECCCCCC-HhHHHHHHHHHH-----cCCCEEEEEECcccc
Confidence 1222 35799999987653221 122233333222 257999999999985
No 221
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.73 E-value=1.2e-07 Score=93.35 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||+.+++..... ..+.+++..........++ ..+.++||||-... ..+. ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--------DRLR---PL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh--------hhhh---hh
Confidence 68999999999999999999875422 2233433333333334455 46789999996322 1111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~--~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ ..+|++|+|.+++.... ..+. .++..+... .-..|+|+|.||+|+.
T Consensus 69 ~~--~~~d~~ilv~d~~~~~s-f~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~ 118 (174)
T cd01871 69 SY--PQTDVFLICFSLVSPAS-FENVRAKWYPEVRHH---CPNTPIILVGTKLDLR 118 (174)
T ss_pred hc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHh---CCCCCEEEEeeChhhc
Confidence 22 36799999988764321 1111 133333332 1257999999999985
No 222
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.73 E-value=8e-08 Score=99.27 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
++|+++|.+|||||||+|.+++..... ..+ |.........+....+.|+||||.... ..+.. .++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~---~~~-Tig~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~~---~~~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD---TVS-TVGGAFYLKQWGPYNISIWDTAGREQF--------HGLGS---MYC 65 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CCC-ccceEEEEEEeeEEEEEEEeCCCcccc--------hhhHH---HHh
Confidence 589999999999999999999865432 112 222222222335678999999997432 11111 122
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~-~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+|++|+|.+++.... ..+. ..+..+.+... ...|+|+|.||+|+..
T Consensus 66 --~~ad~~IlV~Dvt~~~S-f~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 66 --RGAAAVILTYDVSNVQS-LEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred --ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 36799999987664321 1111 12222333221 2468999999999864
No 223
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.72 E-value=3.1e-07 Score=92.51 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=72.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCC-ceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQP-ATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~-tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..++|+++|..|||||||++++.+... . ....+ .+.+........++ ..+.|+||||.... ..+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~l~-- 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-E-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF--------CTIF-- 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHH--
Confidence 458999999999999999999987432 1 11212 22333333445556 56789999997321 1222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+. ..+|++|+|.+++....-..-..++..+.+.. -..|+|||.||.|+.
T Consensus 73 -~~~~--~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~ 123 (189)
T cd04121 73 -RSYS--RGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLA 123 (189)
T ss_pred -HHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccch
Confidence 1233 36799999988764331011123444444332 257999999999985
No 224
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.72 E-value=7.8e-08 Score=95.77 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
+|+|+|.+|||||||++.+++...... +.++...........++ ..+.|+||||-.... .+.. .+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--------~l~~---~~ 68 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD--------RLRS---LS 68 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc--------cccc---cc
Confidence 799999999999999999998654322 22222222112223344 568999999964321 1111 11
Q ss_pred HhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
. ..+|++++|.+++.... ... ..++..+.... ...|+++|.||+|+..
T Consensus 69 ~--~~a~~~ilv~dv~~~~s-f~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~ 118 (189)
T cd04134 69 Y--ADTDVIMLCFSVDSPDS-LENVESKWLGEIREHC---PGVKLVLVALKCDLRE 118 (189)
T ss_pred c--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 1 36799999977765431 111 12344444321 2579999999999864
No 225
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.72 E-value=1.7e-07 Score=95.45 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCc-eeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
+.|+++|..|||||||++.+....... .+.++ +.+.......++| ..+.|+||+|-... ..+. .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~--------~~l~---~ 67 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSIT---S 67 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh--------HHHH---H
Confidence 469999999999999999998654321 22222 2234333445566 56789999996321 1111 2
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.++ ..+|++++|.+++.... ..+ ..++..+.+... -..|+|+|.||+|+.
T Consensus 68 ~y~--~~ad~iIlVfDvtd~~S-f~~l~~w~~~i~~~~~--~~~piilVgNK~DL~ 118 (202)
T cd04120 68 AYY--RSAKGIILVYDITKKET-FDDLPKWMKMIDKYAS--EDAELLLVGNKLDCE 118 (202)
T ss_pred HHh--cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhCC--CCCcEEEEEECcccc
Confidence 233 36799999987764321 111 123333333321 247999999999985
No 226
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.72 E-value=9.7e-08 Score=113.73 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE----cCeEEEEEeCCCCCCcccchhhhhHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV----NGIKVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~----~G~~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
....+|+|+|.+|+|||||+|+|.+..... +...+.|.+...+...+ .+..+.|+||||.... .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-----------~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-----------S 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH-----------H
Confidence 456799999999999999999999765433 33345555544333333 3589999999996321 1
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
....+.+ ..+|++++|++.+.... ......+..+.. ...|+|+|+||+|+.
T Consensus 310 ~mr~rg~--~~aDiaILVVDA~dGv~-~QT~E~I~~~k~-----~~iPiIVViNKiDl~ 360 (742)
T CHL00189 310 SMRSRGA--NVTDIAILIIAADDGVK-PQTIEAINYIQA-----ANVPIIVAINKIDKA 360 (742)
T ss_pred HHHHHHH--HHCCEEEEEEECcCCCC-hhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence 1122233 25699999987653211 123334444332 357999999999986
No 227
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.71 E-value=3e-07 Score=95.21 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CCcee-cCCCCceeeEEEEEeEE---cCeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQ-TKTET-DAFQPATDCIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~-~~a~v-s~~~~tT~~~~~~~~~~---~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..|+|+|++++|||||+|.|+|. ..+.+ ....++|+.+......+ .+..++++||||+.+..... ...+..+..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhhHHHH
Confidence 57999999999999999999998 35665 45577888766555444 35789999999998874321 022222333
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHH-----------hCCcccccEEEEEeccCCCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEV-----------FGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~-----------fG~~i~k~vIIVLTK~D~l~pd 257 (747)
+...+ .+++||........ .+...+..+.+. .........+.|+.-++...+.
T Consensus 87 l~~ll----ss~~i~n~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~~ 150 (224)
T cd01851 87 LATLL----SSVLIYNSWETILG---DDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTPL 150 (224)
T ss_pred HHHHH----hCEEEEeccCcccH---HHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCccc
Confidence 32222 47888885443222 233333333331 1223345667788777765443
No 228
>PRK00098 GTPase RsgA; Reviewed
Probab=98.70 E-value=4.1e-08 Score=105.71 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCC-------ceeeEEEEEeEEcCeEEEEEeCCCCCCcccch--hhhhHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNRK 193 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~-------tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~--~~~~~~ 193 (747)
-.++++|++|||||||||+|+|.....++.+.. +|+....+..... ..|+||||+....... ......
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~~~~~~~~~~~~~ 241 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSFGLHDLEAEELEH 241 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCccCCCCCCHHHHHH
Confidence 478999999999999999999987776655433 6666666554322 3899999998643321 122333
Q ss_pred HHHHHHHHHhcCCCC
Q 004520 194 IMLSVKKFIRRSPPD 208 (747)
Q Consensus 194 il~~ik~~I~~~~~D 208 (747)
.+..+..+...|++.
T Consensus 242 ~f~~~~~~~~~c~f~ 256 (298)
T PRK00098 242 YFPEFRPLSGDCKFR 256 (298)
T ss_pred HHHHHHHHhCCCCCC
Confidence 444444555444443
No 229
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.69 E-value=3e-07 Score=103.49 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcee------------------------------cCCCCceeeEEEEEeEEcC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTET------------------------------DAFQPATDCIREVKGSVNG 169 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v------------------------------s~~~~tT~~~~~~~~~~~G 169 (747)
...++|+++|.+++|||||+++|+....... ....+.|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3468999999999999999999984221110 0123567777777778888
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC--CCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM--GFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~--~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
..+.|+||||..+ ....+...+ ..+|++++|++.+.... .......+. +.+.++ ..++|||
T Consensus 85 ~~i~iiDtpGh~~-----------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVv 147 (426)
T TIGR00483 85 YEVTIVDCPGHRD-----------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVA 147 (426)
T ss_pred eEEEEEECCCHHH-----------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEE
Confidence 9999999999521 122222222 35799999987654311 011112121 233333 2579999
Q ss_pred EeccCCC
Q 004520 248 MTHSSST 254 (747)
Q Consensus 248 LTK~D~l 254 (747)
+||+|+.
T Consensus 148 iNK~Dl~ 154 (426)
T TIGR00483 148 INKMDSV 154 (426)
T ss_pred EEChhcc
Confidence 9999986
No 230
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.68 E-value=6e-09 Score=102.91 Aligned_cols=61 Identities=30% Similarity=0.373 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCC-------CCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~-------~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
-.++++|++|||||||||+|++.....++.+ ..+|+....+... ....||||||+.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCccccc
Confidence 3689999999999999999999866665332 3356666655542 23489999999887654
No 231
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.68 E-value=8.3e-08 Score=107.35 Aligned_cols=88 Identities=23% Similarity=0.227 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeE---------------------Ec---CeEEEEEeCC
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS---------------------VN---GIKVTFIDTP 178 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~---------------------~~---G~~v~LIDTP 178 (747)
++|+|||.||||||||+|+|++.. +.+++++++|.++...... .+ ..++.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 589999999999999999999875 4667888888776654322 12 2468899999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 004520 179 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 217 (747)
Q Consensus 179 Gl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld 217 (747)
|+......+ ..+...+...++ .+|++++|++..
T Consensus 81 Gl~~ga~~g----~glg~~fL~~ir--~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEG----RGLGNQFLDDLR--QADALIHVVDAS 113 (396)
T ss_pred CcCCCccch----hhHHHHHHHHHH--HCCEEEEEEeCC
Confidence 997653222 223333333343 469999998764
No 232
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.67 E-value=9.4e-08 Score=104.05 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=60.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE------------------------cCeEEEEEeCCCC
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------------------NGIKVTFIDTPGF 180 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------------------------~G~~v~LIDTPGl 180 (747)
|++||.||||||||+|+|++.. +.+++++.+|.++......+ .+.++.|+||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999865 57788888887765433221 2357999999999
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC
Q 004520 181 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL 218 (747)
Q Consensus 181 ~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~ 218 (747)
...... ...+...+...++ .+|++++|++...
T Consensus 80 v~ga~~----~~glg~~fL~~ir--~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGAHE----GKGLGNKFLDDLR--DADALIHVVDASG 111 (318)
T ss_pred CCCccc----hhhHHHHHHHHHH--HCCEEEEEEeCCC
Confidence 755322 1222233333343 4699999987754
No 233
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.66 E-value=3.3e-07 Score=91.09 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||++.+.+.... ..+.++..........+++ ..+.|+||||-... ..+.. .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~--------~~~~~---~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY--------DNVRP---L 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhh--------hhcch---h
Confidence 68999999999999999999976422 2233333222222334444 46789999995321 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+. ..+|++|+|.+++.... ... ..++..+.+.. -..|+|+|.||+|+.
T Consensus 69 ~~--~~a~~~ilvfdit~~~S-f~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~ 118 (178)
T cd04131 69 CY--PDSDAVLICFDISRPET-LDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLR 118 (178)
T ss_pred hc--CCCCEEEEEEECCChhh-HHHHHHHHHHHHHHHC---CCCCEEEEEEChhhh
Confidence 22 36799999987754321 111 12333444432 147999999999974
No 234
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.64 E-value=2.9e-07 Score=95.22 Aligned_cols=110 Identities=21% Similarity=0.296 Sum_probs=68.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCC-ceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTK-TETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~-a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
...+..|+|+|.+|+|||||+|+|++... ..+....+ | + .. ....+.++.++||||.. ..+...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i-~i-~~~~~~~i~~vDtPg~~----------~~~l~~ 100 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I-TV-VTGKKRRLTFIECPNDI----------NAMIDI 100 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--E-EE-EecCCceEEEEeCCchH----------HHHHHH
Confidence 34567899999999999999999998622 22222222 1 1 11 22367899999999842 122222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccE-EEEEeccCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT-ILVMTHSSSTL 255 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~v-IIVLTK~D~l~ 255 (747)
+ ..+|++++|++.... ....+..++..+... ..|. |+|+||+|.+.
T Consensus 101 a------k~aDvVllviDa~~~-~~~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 101 A------KVADLVLLLIDASFG-FEMETFEFLNILQVH-----GFPRVMGVLTHLDLFK 147 (225)
T ss_pred H------HhcCEEEEEEecCcC-CCHHHHHHHHHHHHc-----CCCeEEEEEeccccCC
Confidence 2 246999999765432 112455566655543 3565 45999999873
No 235
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.64 E-value=2.3e-07 Score=108.69 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=74.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCce-----ec----------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTE-----TD----------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 188 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~-----vs----------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~ 188 (747)
+|+|+|..++|||||+++|+...... +. ...+.|-......+.+.+..+.||||||..+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF----- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF----- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH-----
Confidence 69999999999999999998532111 00 01245555666667888999999999997432
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 189 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 189 ~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
...+.++++ .+|++++|++.... ...+...+++.+.+. ..|.|||+||+|..
T Consensus 78 ------~~ev~~~l~--~aD~alLVVDa~~G-~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~ 129 (594)
T TIGR01394 78 ------GGEVERVLG--MVDGVLLLVDASEG-PMPQTRFVLKKALEL-----GLKPIVVINKIDRP 129 (594)
T ss_pred ------HHHHHHHHH--hCCEEEEEEeCCCC-CcHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 122334442 46999999766432 112334455544442 57899999999975
No 236
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.64 E-value=2.7e-07 Score=108.58 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcee--cCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
+.|+++|.+++|||||+|+|+|.+.... ....+.|.+........ ++..+.||||||..+ ....+.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~ 69 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNML 69 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHH
Confidence 3589999999999999999998542222 22235565554333322 577899999999621 112222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+ ..+|++++|++.+..- ...+...+..+.. +| ..++|||+||+|+.
T Consensus 70 ~g~--~~~D~~lLVVda~eg~-~~qT~ehl~il~~-lg---i~~iIVVlNKiDlv 117 (614)
T PRK10512 70 AGV--GGIDHALLVVACDDGV-MAQTREHLAILQL-TG---NPMLTVALTKADRV 117 (614)
T ss_pred HHh--hcCCEEEEEEECCCCC-cHHHHHHHHHHHH-cC---CCeEEEEEECCccC
Confidence 222 3679999998766421 1244455554433 23 23468999999986
No 237
>PLN00023 GTP-binding protein; Provisional
Probab=98.62 E-value=7.4e-07 Score=97.16 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeEE-------------cCeEEEEEeCCCCCCcc
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSV-------------NGIKVTFIDTPGFLPSC 184 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~-------------~G~~v~LIDTPGl~~~~ 184 (747)
....++|+|+|..|||||||++.+++...... ...-+.+.....+.... ....+.|+||+|-...
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf- 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY- 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh-
Confidence 34568999999999999999999997643221 11111111112222110 1246899999996321
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC----------cccccEEEEEeccCCC
Q 004520 185 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT----------AIWFNTILVMTHSSST 254 (747)
Q Consensus 185 ~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~----------~i~k~vIIVLTK~D~l 254 (747)
..+.. .++ ..++++|+|.+++....-..-..+++.+....+. ....++|||.||+|+.
T Consensus 97 -------rsL~~---~yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 -------KDCRS---LFY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred -------hhhhH---Hhc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 11111 122 3689999998776532100112344444443210 0136899999999986
Q ss_pred C
Q 004520 255 L 255 (747)
Q Consensus 255 ~ 255 (747)
.
T Consensus 165 ~ 165 (334)
T PLN00023 165 P 165 (334)
T ss_pred c
Confidence 4
No 238
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.61 E-value=6.3e-08 Score=103.87 Aligned_cols=87 Identities=22% Similarity=0.245 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecC-------CCCceeeEEEEEeEEcCeEEEEEeCCCCCCccc--chhhhhHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDA-------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV--RNVKRNRKI 194 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~-------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~--~~~~~~~~i 194 (747)
..+++|.+|||||||||+|.++....++. ...||+....+.+..+| .|||||||..... .....-...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~~ 242 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQA 242 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHHH
Confidence 57899999999999999999976666533 23477777777765566 8999999998765 212233344
Q ss_pred HHHHHHHHhcCCCCEEEEE
Q 004520 195 MLSVKKFIRRSPPDIVLYF 213 (747)
Q Consensus 195 l~~ik~~I~~~~~DvVL~V 213 (747)
..++..+...|++.-|...
T Consensus 243 F~ef~~~~~~CkFr~C~H~ 261 (301)
T COG1162 243 FPEFAELARQCKFRDCTHT 261 (301)
T ss_pred hHHHHHHhcCCCCCCCCCC
Confidence 4555666656655555444
No 239
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.61 E-value=2.9e-07 Score=107.66 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE------------------cCeEEEEEeCCCCCCc
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------------NGIKVTFIDTPGFLPS 183 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------------------~G~~v~LIDTPGl~~~ 183 (747)
+..|+++|++|+|||||+|+|.+..... ....+.|.+........ ....+.|+||||....
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3469999999999999999999875432 11122343221111111 0124899999996321
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 184 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 184 ~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
... ...+. ..+|++++|++.+... ...+...+..+... ..|+|+|+||+|+..
T Consensus 83 --------~~l---~~~~~--~~aD~~IlVvD~~~g~-~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 --------TNL---RKRGG--ALADLAILIVDINEGF-KPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred --------HHH---HHHHH--hhCCEEEEEEECCcCC-CHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 111 11122 3579999998765321 12344455444332 579999999999873
No 240
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.60 E-value=7.4e-07 Score=89.15 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..++|+++|.+|||||||++.+++.... ..+.++..........+++ ..+.|+||+|-... ..+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~--------~~~~--- 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--------DNVR--- 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCCchhh--------Hhhh---
Confidence 4689999999999999999999875432 1233333322223334444 46889999996321 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+. ..+|++++|.+++.... ... ..++..+.+.. -..|+|+|.||+|+.
T Consensus 71 ~~~~--~~ad~~ilvyDit~~~S-f~~~~~~w~~~i~~~~---~~~piilVgNK~DL~ 122 (182)
T cd04172 71 PLSY--PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHC---CCCCEEEEeEChhhh
Confidence 1122 46899999987764321 111 13344444432 147999999999974
No 241
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.60 E-value=6.9e-07 Score=89.01 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
++|+++|.+|||||||++.+++..... .+.++.. +........++ ..+.++||+|-... .... .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~~~---~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF--------INML---P 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH--------HHhh---H
Confidence 589999999999999999998764322 2233322 23333344455 46789999996321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.++ ..+|++++|.+++.... ..+ ...+..+... ... ..| |+|.||+|+.
T Consensus 68 ~~~--~~a~~iilv~D~t~~~s-~~~i~~~~~~~~~~-~~~-~~p-ilVgnK~Dl~ 117 (182)
T cd04128 68 LVC--NDAVAILFMFDLTRKST-LNSIKEWYRQARGF-NKT-AIP-ILVGTKYDLF 117 (182)
T ss_pred HHC--cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHh-CCC-CCE-EEEEEchhcc
Confidence 122 36799999977654321 111 1233333332 111 245 7889999986
No 242
>PRK10218 GTP-binding protein; Provisional
Probab=98.59 E-value=3.8e-07 Score=107.02 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceec---------------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccch
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETD---------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 187 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs---------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~ 187 (747)
-+|+|+|..++|||||+++|+........ ...+.|-......+.+.+..+.|+||||..+..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 47999999999999999999963221110 112345555556667789999999999985431
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 188 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 188 ~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+..++ ..+|++++|++....- .......++.+.+. ..|.|+|+||+|..
T Consensus 83 --------~~v~~~l--~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~~-----gip~IVviNKiD~~ 133 (607)
T PRK10218 83 --------GEVERVM--SMVDSVLLVVDAFDGP-MPQTRFVTKKAFAY-----GLKPIVVINKVDRP 133 (607)
T ss_pred --------HHHHHHH--HhCCEEEEEEecccCc-cHHHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 1222333 3569999997664321 12344455544432 57889999999975
No 243
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.59 E-value=7.8e-07 Score=92.80 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=70.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
...++|++||.+|||||||++.+++..... .+.++..........+++ ..+.|+||||-... ..+..
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~~- 79 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY--------DNVRP- 79 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh--------HHHHH-
Confidence 346899999999999999999998754221 223333222222334444 46889999995211 11111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+. ..+|++++|.+++.... ... ..++..+.+.. -..|+|+|.||+|+.
T Consensus 80 --~~~--~~ad~vIlVyDit~~~S-f~~~~~~w~~~i~~~~---~~~piilVgNK~DL~ 130 (232)
T cd04174 80 --LCY--SDSDAVLLCFDISRPET-VDSALKKWKAEIMDYC---PSTRILLIGCKTDLR 130 (232)
T ss_pred --HHc--CCCcEEEEEEECCChHH-HHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 122 46899999987764321 111 12334444432 146899999999974
No 244
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.58 E-value=7.5e-07 Score=92.29 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+|||.+|||||||++.+++..... .+.++..........+++ ..+.|+||+|-..- .. +..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~--------~~----l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY--------DN----VRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHH--------HH----HhH
Confidence 689999999999999999999754321 233433332223344455 45788999996321 11 111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l~ 255 (747)
+....+|++|+|.+++.... -..+.+.+..... .....|+|+|.||+|+..
T Consensus 68 -~~~~~~d~illvfdis~~~S---f~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 68 -LAYPDSDAVLICFDISRPET---LDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred -HhccCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 11246799999987764321 1112121111111 112479999999999863
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.57 E-value=1.2e-06 Score=99.49 Aligned_cols=118 Identities=17% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCce------------------------ec------CCCCceeeEEEEEeEEcC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTE------------------------TD------AFQPATDCIREVKGSVNG 169 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~------------------------vs------~~~~tT~~~~~~~~~~~G 169 (747)
...++|+++|..++|||||+..|+...-.. +. ...+.|.+.....+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999996411000 00 122456666666677889
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc------CCCCcHHHHHHHHHHhCCccccc
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS------MGFSDFPLLKLMTEVFGTAIWFN 243 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t------~~~~D~~lLk~L~e~fG~~i~k~ 243 (747)
..+.||||||..+ ....+...+ ..+|++++|++...-- ...+..+.+..+.. +| -++
T Consensus 85 ~~i~lIDtPGh~~-----------f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~g---i~~ 147 (446)
T PTZ00141 85 YYFTIIDAPGHRD-----------FIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LG---VKQ 147 (446)
T ss_pred eEEEEEECCChHH-----------HHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cC---CCe
Confidence 9999999999532 122222223 3679999997664311 01233344444333 22 235
Q ss_pred EEEEEeccCCC
Q 004520 244 TILVMTHSSST 254 (747)
Q Consensus 244 vIIVLTK~D~l 254 (747)
+||++||+|..
T Consensus 148 iiv~vNKmD~~ 158 (446)
T PTZ00141 148 MIVCINKMDDK 158 (446)
T ss_pred EEEEEEccccc
Confidence 78999999953
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.57 E-value=5.3e-07 Score=104.37 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCc--eecCCC-------------------CceeeEEEEEeEEcCeEEEEEeCCC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKT--ETDAFQ-------------------PATDCIREVKGSVNGIKVTFIDTPG 179 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a--~vs~~~-------------------~tT~~~~~~~~~~~G~~v~LIDTPG 179 (747)
...+|+|+|.+|+|||||+++|+-...+ ..+... +.|-......+.+.+..+.|+||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3468999999999999999998632111 111111 1222333455677899999999999
Q ss_pred CCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 180 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 180 l~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+. ... +.+++ ..+|++|+|++.... .......+++.... ...|+|+++||+|..
T Consensus 90 ~~df-------~~~----~~~~l--~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDF-------SED----TYRTL--TAVDNCLMVIDAAKG-VETRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhhH-------HHH----HHHHH--HhCCEEEEEEECCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 8432 122 22333 246999999765432 11122334433322 257999999999975
No 247
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.56 E-value=1e-06 Score=99.34 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCCceecC--CCCc--------eee----EEEEEeEE-------------
Q 004520 121 FSIRILVLGKTGVGKSATINSIF------DQTKTETDA--FQPA--------TDC----IREVKGSV------------- 167 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLl------G~~~a~vs~--~~~t--------T~~----~~~~~~~~------------- 167 (747)
.+-.|+++|.+||||||++..|. |..+..++. +.+. +.. +.......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35689999999999999999996 555554432 2111 001 11100000
Q ss_pred --cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEE
Q 004520 168 --NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 245 (747)
Q Consensus 168 --~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vI 245 (747)
.+..++||||||.... +...+.++.+......|+.+++|++.. .. ......++.+.+.. .+.-
T Consensus 179 ~~~~~DvViIDTaGr~~~-------d~~lm~El~~i~~~~~p~e~lLVlda~--~G-q~a~~~a~~F~~~~-----~~~g 243 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQ-------EDSLFEEMLQVAEAIQPDNIIFVMDGS--IG-QAAEAQAKAFKDSV-----DVGS 243 (429)
T ss_pred HhCCCCEEEEECCCCCcc-------hHHHHHHHHHHhhhcCCcEEEEEeccc--cC-hhHHHHHHHHHhcc-----CCcE
Confidence 2578999999997543 345667777666556789999995533 21 12344555555432 4678
Q ss_pred EEEeccCCCCCC
Q 004520 246 LVMTHSSSTLPE 257 (747)
Q Consensus 246 IVLTK~D~l~pd 257 (747)
+|+||.|.....
T Consensus 244 ~IlTKlD~~arg 255 (429)
T TIGR01425 244 VIITKLDGHAKG 255 (429)
T ss_pred EEEECccCCCCc
Confidence 899999987543
No 248
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.56 E-value=2.7e-07 Score=89.55 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=63.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
||++||++|+|||||+++|.|.+... .-|..+.. .+ .+|||||=+-. +......+....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-----~KTq~i~~-----~~---~~IDTPGEyiE-------~~~~y~aLi~ta- 61 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-----KKTQAIEY-----YD---NTIDTPGEYIE-------NPRFYHALIVTA- 61 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-----CccceeEe-----cc---cEEECChhhee-------CHHHHHHHHHHH-
Confidence 79999999999999999999965321 11222221 22 46999996522 233344443322
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|+|++|.+.+..... .--.+...| .+|+|=|+||+|+.
T Consensus 62 -~dad~V~ll~dat~~~~~-----~pP~fa~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 62 -QDADVVLLLQDATEPRSV-----FPPGFASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred -hhCCEEEEEecCCCCCcc-----CCchhhccc----CCCEEEEEECccCc
Confidence 367999999766543211 111122333 47999999999987
No 249
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.56 E-value=1.1e-06 Score=87.95 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
.++|+++|.+|||||||++.+....... .+.++..........+++ ..+.|+||||-... ..+. .
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~--------~~l~---~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY--------DRLR---T 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhh--------hhhh---h
Confidence 5899999999999999999998654221 122333222222233455 46789999996321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~--~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+. ..+|++++|.+++.... .... .+...+... .-..|++||.||.|+.
T Consensus 70 ~~~--~~a~~~ilvydit~~~S-f~~~~~~w~~~i~~~---~~~~piilvgNK~DL~ 120 (191)
T cd01875 70 LSY--PQTNVFIICFSIASPSS-YENVRHKWHPEVCHH---CPNVPILLVGTKKDLR 120 (191)
T ss_pred hhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEEeChhhh
Confidence 122 36899999987764321 1111 122223322 1257999999999985
No 250
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.56 E-value=6.2e-07 Score=89.29 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||++.++.... . ..+.++...........++ .++.++||+|-.... .+. ..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~--------~~~---~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-P-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLR---PL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-C-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCcccc--------ccc---hh
Confidence 6899999999999999999997543 2 1233333332223334444 467899999974321 111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D--~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++|+|.+++.... ... ...+..+.... -..|+|+|.||+|+..
T Consensus 69 ~~--~~a~~~ilvyd~~~~~S-f~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~ 119 (176)
T cd04133 69 SY--RGADVFVLAFSLISRAS-YENVLKKWVPELRHYA---PNVPIVLVGTKLDLRD 119 (176)
T ss_pred hc--CCCcEEEEEEEcCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEeChhhcc
Confidence 22 36799999988764331 112 12344443321 2579999999999863
No 251
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.55 E-value=5e-07 Score=86.28 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
||+++|.+|||||||++++.+..... ...++. .+........++. .+.|+||+|-... ..... .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~---~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF--------DSLRD---I 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG--------HHHHH---H
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--ccccccccccccccccccccccccccccccccccc--------ccccc---c
Confidence 69999999999999999999764322 222332 3444444555554 5899999995321 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++ ..+|++++|.+++....-..-..++..+..... ...|+++|.||.|...
T Consensus 68 ~~--~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 68 FY--RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HH--TTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred cc--ccccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence 22 467999999777643311112245555555533 2379999999999764
No 252
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=2e-07 Score=98.21 Aligned_cols=130 Identities=21% Similarity=0.325 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcee-c--CCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTET-D--AFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKI 194 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v-s--~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~i 194 (747)
.+.++|+.||.||.||||||++|++-..-.. + ..+.+--....+.....+ .+++++||.|+++.-..+ ....-+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~-~Syk~i 118 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKE-DSYKPI 118 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcc-cccchH
Confidence 5789999999999999999999998543221 1 111111122222222223 367999999999862221 111111
Q ss_pred H----HHHHHHH-------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 195 M----LSVKKFI-------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 195 l----~~ik~~I-------------~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
. ..+..++ ..+++|+|||++...+......|.-.++.+.+. .++|.|+.|+|.+..
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH
Confidence 1 1111111 245899999999887776656777777777765 689999999998754
No 253
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.54 E-value=6.7e-07 Score=104.90 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=68.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceec--------C------CCCceeeEEEEEeEE---cC--eEEEEEeCCCCCCcc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETD--------A------FQPATDCIREVKGSV---NG--IKVTFIDTPGFLPSC 184 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs--------~------~~~tT~~~~~~~~~~---~G--~~v~LIDTPGl~~~~ 184 (747)
+|+|+|.+|+|||||+++|+........ + ..+.|-....+...+ ++ ..+.|+||||..+.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF- 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF- 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-
Confidence 7999999999999999999864322110 1 124444444444444 22 67899999998543
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 185 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 185 ~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
...+.+++. .+|++++|++....-. ......+....+ ...|+|+|+||+|+.
T Consensus 84 ----------~~~v~~~l~--~aD~aILVvDat~g~~-~qt~~~~~~~~~-----~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 ----------SYEVSRSLA--ACEGALLLVDAAQGIE-AQTLANVYLALE-----NDLEIIPVINKIDLP 135 (595)
T ss_pred ----------HHHHHHHHH--hCCEEEEEecCCCCCC-HhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 112333443 4699999976643211 122222222222 246899999999974
No 254
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.54 E-value=9.8e-07 Score=88.89 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-CeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.++|+++|..|||||||+|++.+...........++........... ...+.++||+|..+- ..++. .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~--------~~~~~---~ 73 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY--------RSLRP---E 73 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH--------HHHHH---H
Confidence 38999999999999999999998765543321111222222221111 456899999997322 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccC-CCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISM-GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~-~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
+. .+++++++|.+...... ...-..+...+....+ -..++++|.||+|+...
T Consensus 74 y~--~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 74 YY--RGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDE 126 (219)
T ss_pred Hh--cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccc
Confidence 21 36788888866554221 1111223333333321 25799999999999853
No 255
>PTZ00416 elongation factor 2; Provisional
Probab=98.52 E-value=5.4e-07 Score=109.48 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee---------------eEEEEEeEEc----------CeEEEEEeC
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD---------------CIREVKGSVN----------GIKVTFIDT 177 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~---------------~~~~~~~~~~----------G~~v~LIDT 177 (747)
-+|+|+|..++|||||+++|+...........+.|+ ....+...+. +..+.|+||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 489999999999999999999754433222222222 1111222333 567999999
Q ss_pred CCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 178 PGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 178 PGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
||..+. ..++...+ ..+|++++|++...- ....+..+++.+.+. ..|+|+++||+|..
T Consensus 100 PG~~~f-----------~~~~~~al--~~~D~ailVvda~~g-~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHVDF-----------SSEVTAAL--RVTDGALVVVDCVEG-VCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred CCHHhH-----------HHHHHHHH--hcCCeEEEEEECCCC-cCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 998542 22233334 357999999765432 223556677666554 57999999999987
No 256
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.52 E-value=1e-06 Score=90.01 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee-eEEEEEeEE-------cCeEEEEEeCCCCCCcccchhhhhHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSV-------NGIKVTFIDTPGFLPSCVRNVKRNRKI 194 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~-------~G~~v~LIDTPGl~~~~~~~~~~~~~i 194 (747)
++|+++|.+|||||||++.+++...... ..++.. +.......+ ....+.|+||+|-... ..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHH
Confidence 4899999999999999999998653321 122211 111111222 1246889999997321 111
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-----------------CcccccEEEEEeccCCCC
Q 004520 195 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-----------------TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 195 l~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-----------------~~i~k~vIIVLTK~D~l~ 255 (747)
. ..+. ..+|++++|.+++....-..-..++..+...-+ ..-..|+|||.||+|+..
T Consensus 71 ~---~~~y--r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 71 R---AVFY--NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred H---HHHh--CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 1 1233 367999999887654210011123333433210 112479999999999863
No 257
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.52 E-value=7.7e-07 Score=88.39 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
.+|+|+|.+|+|||||+|.+....... ...+++.........+.+ ..+.++||||....... ...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~---------~~~-- 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL---------RPL-- 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc---------chh--
Confidence 589999999999999999998543222 122222222222333444 35789999997432110 000
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~--~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
. ...+|++++|.+++.... ..+. .++..+..... ..|+|+|.||+|+.
T Consensus 69 ~--~~~a~~~llv~~i~~~~s-~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 69 S--YSKAHVILIGFAVDTPDS-LENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred h--cCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 1 146799998877754321 1111 23444444322 48999999999975
No 258
>PRK13351 elongation factor G; Reviewed
Probab=98.51 E-value=7.9e-07 Score=105.92 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCce--ec---------C------CCCceeeEEEEEeEEcCeEEEEEeCCCCCCcc
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTE--TD---------A------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 184 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~--vs---------~------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~ 184 (747)
-.+|+|+|..|+|||||+++|+...... .+ + ..+.|.......+.+.+..+.|+||||..+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df- 86 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF- 86 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH-
Confidence 4689999999999999999998532111 01 0 1123444444566778999999999998532
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 185 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 185 ~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
......+++ .+|++++|++..... ......+++.+... ..|+++|+||+|+.
T Consensus 87 ----------~~~~~~~l~--~aD~~ilVvd~~~~~-~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 ----------TGEVERSLR--VLDGAVVVFDAVTGV-QPQTETVWRQADRY-----GIPRLIFINKMDRV 138 (687)
T ss_pred ----------HHHHHHHHH--hCCEEEEEEeCCCCC-CHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence 112233332 459999997665321 12334455444332 57999999999976
No 259
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.51 E-value=6.5e-07 Score=88.63 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
....+|+++|..|+||||++|.|.......+ ..|.......+...+..+.++|.+|-... ...++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~--------~~~w~--- 76 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESF--------RPLWK--- 76 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGG--------GGGGG---
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEeccccccc--------cccce---
Confidence 4578999999999999999999997543332 22444555556678999999999995321 11111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
.+. ..+|+++||++...... -....+.+.+.+... ...|++|++||.|..
T Consensus 77 ~y~--~~~~~iIfVvDssd~~~---l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 77 SYF--QNADGIIFVVDSSDPER---LQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp GGH--TTESEEEEEEETTGGGG---HHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred eec--cccceeEEEEeccccee---ecccccchhhhcchhhcccceEEEEecccccc
Confidence 122 25699999976553321 223445555555432 258999999999975
No 260
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.50 E-value=6e-07 Score=94.96 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=82.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCce-ecC-CCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTE-TDA-FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~-vs~-~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
+...+++++|.+|||||||||.++-..... ++. .++.|+....+. -|..+++||.||++..+... ...+..-+-
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~-~~~~d~~~~ 209 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGF-ELPADWDKF 209 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCc-cCcchHhHh
Confidence 556899999999999999999998764433 332 455566555554 58899999999966543221 122223333
Q ss_pred HHHHHhcC--CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 198 VKKFIRRS--PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 198 ik~~I~~~--~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.+.++... -..++|+|+..-.+ ...|...+.++.+. ..|..+||||||...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence 33333222 24566666433333 24688888888876 689999999999874
No 261
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.50 E-value=1.3e-06 Score=101.05 Aligned_cols=115 Identities=9% Similarity=0.031 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC--CceecCCC-------------------CceeeEEEEEeEEcCeEEEEEeCCC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQT--KTETDAFQ-------------------PATDCIREVKGSVNGIKVTFIDTPG 179 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~--~a~vs~~~-------------------~tT~~~~~~~~~~~G~~v~LIDTPG 179 (747)
..-+|+|+|.+|+|||||+++|+-.. ....+... +.|-......+.+++..+.|+||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 34589999999999999999997321 11111111 1122233345677899999999999
Q ss_pred CCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 180 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 180 l~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+. ... ..+++. .+|++++|++.... .......+++.... ...|+++++||+|..
T Consensus 89 ~~df-------~~~----~~~~l~--~aD~aIlVvDa~~g-v~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDF-------SED----TYRTLT--AVDSALMVIDAAKG-VEPQTRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred chhh-------HHH----HHHHHH--HCCEEEEEEecCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 8543 112 222332 46999999765432 11122334433322 258999999999975
No 262
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.49 E-value=1.4e-06 Score=88.46 Aligned_cols=119 Identities=10% Similarity=-0.008 Sum_probs=64.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc-eecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKT-ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a-~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
...++|+++|.+|||||||+|.++..... ...+..+.......+........+.++||||-... ....
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------~~~~--- 75 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------GGLR--- 75 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh--------hhhh---
Confidence 45689999999999999999865543211 11111111111111111223467899999995321 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+. ...+++++|.++.....-..-...+..+.+.. -..|+++|.||+|+.
T Consensus 76 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 76 DGYY--IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVK 126 (215)
T ss_pred HHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCc
Confidence 1222 24688988876653221001112333333332 146889999999975
No 263
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.46 E-value=1.5e-06 Score=101.93 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=67.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE------cC------------eEEEEEeCCCCCC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------NG------------IKVTFIDTPGFLP 182 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------~G------------~~v~LIDTPGl~~ 182 (747)
++..|+++|++|+|||||+|+|.+...... ...+.|.+........ .+ ..+.|+||||...
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~-~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAK-EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccC-CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 456799999999999999999988643321 1112232221111000 01 1278999999743
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.. .. ..+.. ..+|++++|++.+.. ........+..+.. ...|+++++||+|+.
T Consensus 84 f~--------~~---~~~~~--~~aD~~IlVvDa~~g-~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FT--------NL---RKRGG--ALADIAILVVDINEG-FQPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HH--------HH---HHHhH--hhCCEEEEEEECCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 21 11 11122 357999999876532 11234444544433 257899999999985
No 264
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.46 E-value=9.8e-07 Score=85.87 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
++|+++|.+|||||||++.++....... .++ |.........++| ..+.++||+|.... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~----------------~ 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA----------------Q 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC--CCC-CccceEEEEEECCEEEEEEEEECCCCCch----------------h
Confidence 4799999999999999999876432211 222 2222223345566 45789999997321 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+. ..+|++++|.+++.... ... ..++..+..... ....|+++|.||.|+.
T Consensus 62 ~~--~~~~~~ilv~d~~~~~s-f~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 62 FA--SWVDAVIFVFSLENEAS-FQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred HH--hcCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 11 24699999987764331 112 234444444321 1246999999999874
No 265
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.46 E-value=1.1e-06 Score=98.51 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcee--cCCCCceeeEEE----------------EEeE----------EcCeEE
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIRE----------------VKGS----------VNGIKV 172 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~v--s~~~~tT~~~~~----------------~~~~----------~~G~~v 172 (747)
..++|+++|.+++|||||+++|.+...... ....+.|-.... +... ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999986421100 000111211110 0000 024689
Q ss_pred EEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccC
Q 004520 173 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 252 (747)
Q Consensus 173 ~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D 252 (747)
.|+||||..+ ....+.... ..+|++++|++.+......+....+..+ ..+| .+++|+|+||+|
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~D 145 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKID 145 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEccc
Confidence 9999999621 112222222 2569999998776421112334444433 3333 257999999999
Q ss_pred CCC
Q 004520 253 STL 255 (747)
Q Consensus 253 ~l~ 255 (747)
+..
T Consensus 146 l~~ 148 (406)
T TIGR03680 146 LVS 148 (406)
T ss_pred cCC
Confidence 873
No 266
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.43 E-value=1.7e-06 Score=105.32 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee---------------eEEEEEeEE----------------cCe
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD---------------CIREVKGSV----------------NGI 170 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~---------------~~~~~~~~~----------------~G~ 170 (747)
-.+|+|+|+.++|||||+++|+...........+.|+ ....+...+ .+.
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 3489999999999999999998655433222222222 221222233 267
Q ss_pred EEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 171 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 171 ~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld-~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
.+.||||||..+. ..++...+ ..+|.+++|++.. +.. .....+++.+.+. ..|+|+++|
T Consensus 99 ~inliDtPGh~dF-----------~~e~~~al--~~~D~ailVvda~~Gv~--~~t~~~~~~~~~~-----~~p~i~~iN 158 (843)
T PLN00116 99 LINLIDSPGHVDF-----------SSEVTAAL--RITDGALVVVDCIEGVC--VQTETVLRQALGE-----RIRPVLTVN 158 (843)
T ss_pred EEEEECCCCHHHH-----------HHHHHHHH--hhcCEEEEEEECCCCCc--ccHHHHHHHHHHC-----CCCEEEEEE
Confidence 7899999998433 22233333 3468988887654 222 2455666666554 579999999
Q ss_pred ccCCCC
Q 004520 250 HSSSTL 255 (747)
Q Consensus 250 K~D~l~ 255 (747)
|+|...
T Consensus 159 K~D~~~ 164 (843)
T PLN00116 159 KMDRCF 164 (843)
T ss_pred CCcccc
Confidence 999874
No 267
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.39 E-value=2.3e-06 Score=96.19 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=69.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCc--eecCCCCceeeEEE----------------EEeE--E---c-----
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKT--ETDAFQPATDCIRE----------------VKGS--V---N----- 168 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a--~vs~~~~tT~~~~~----------------~~~~--~---~----- 168 (747)
+.....++|+++|..++|||||+.+|.+.... ......+.|-.... +... . +
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 34456799999999999999999999763110 00001223332211 0000 0 0
Q ss_pred CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEE
Q 004520 169 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 248 (747)
Q Consensus 169 G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVL 248 (747)
...+.|+||||.. .....+...+ ..+|++++|++.............+..+.. .+ .+++++|+
T Consensus 84 ~~~i~liDtPG~~-----------~f~~~~~~~~--~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVl 146 (411)
T PRK04000 84 LRRVSFVDAPGHE-----------TLMATMLSGA--ALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQ 146 (411)
T ss_pred ccEEEEEECCCHH-----------HHHHHHHHHH--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEE
Confidence 2689999999952 1112222222 256999999776532111233444544432 22 24789999
Q ss_pred eccCCCC
Q 004520 249 THSSSTL 255 (747)
Q Consensus 249 TK~D~l~ 255 (747)
||+|+..
T Consensus 147 NK~Dl~~ 153 (411)
T PRK04000 147 NKIDLVS 153 (411)
T ss_pred Eeecccc
Confidence 9999874
No 268
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.1e-06 Score=96.47 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=66.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE------------------cCeEEEEEeCCCCCCc
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------------NGIKVTFIDTPGFLPS 183 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------------------~G~~v~LIDTPGl~~~ 183 (747)
.+++.|||.||||||||+|+|+... +...++|.+|-++......+ -...+.|+|.+|+-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999877 77788988887765443221 1136899999999987
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 004520 184 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 217 (747)
Q Consensus 184 ~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld 217 (747)
...+.....+.+..|+ .+|+++.|++..
T Consensus 81 As~GeGLGNkFL~~IR------evdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIR------EVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhh------hcCeEEEEEEec
Confidence 6665445555555443 469999997654
No 269
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.37 E-value=3e-06 Score=99.63 Aligned_cols=113 Identities=16% Similarity=0.090 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCce--------ecC------CCCceeeEEEEEeEEc-----CeEEEEEeCCCCCCc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTE--------TDA------FQPATDCIREVKGSVN-----GIKVTFIDTPGFLPS 183 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~--------vs~------~~~tT~~~~~~~~~~~-----G~~v~LIDTPGl~~~ 183 (747)
-+|+|+|..++|||||+++|+...... +.+ ..+.|-........+. +..+.||||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 489999999999999999997532111 000 1233433333333332 568999999998643
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 184 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 184 ~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
. ..+.+++. .+|++|+|++....-. ..+...+..+.. ...|+|+|+||+|+.
T Consensus 88 ~-----------~~v~~sl~--~aD~aILVVDas~gv~-~qt~~~~~~~~~-----~~lpiIvViNKiDl~ 139 (600)
T PRK05433 88 S-----------YEVSRSLA--ACEGALLVVDASQGVE-AQTLANVYLALE-----NDLEIIPVLNKIDLP 139 (600)
T ss_pred H-----------HHHHHHHH--HCCEEEEEEECCCCCC-HHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 1 12333443 4589999976643211 122223322222 247899999999975
No 270
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.34 E-value=3.6e-06 Score=85.69 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=63.1
Q ss_pred EcCCCCcHHHHHHHHhCCCCceecCCCCce-eeEEEEEeEEc--CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhc
Q 004520 128 LGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 204 (747)
Q Consensus 128 VGk~GvGKSSLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~--G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~ 204 (747)
||.+|||||||+++++.... . ..+.++. .+.......++ ...+.|+||||-... ..+. ..+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~-~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~---~~~~-- 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-E-KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF--------GGLR---DGYY-- 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-C-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh--------hhhh---HHHh--
Confidence 69999999999999986432 1 1122222 12322333333 468899999997322 1111 1233
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 205 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 205 ~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
..+|++++|.++.....-..-..++..+.+.. -..|+|+|.||+|+.
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 35799999977654321001112334444432 257999999999974
No 271
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.32 E-value=2.6e-06 Score=102.13 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=70.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCc---------eecCC------CCceeeEEE----EEeEEcCeEEEEEeCCCCCC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKT---------ETDAF------QPATDCIRE----VKGSVNGIKVTFIDTPGFLP 182 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a---------~vs~~------~~tT~~~~~----~~~~~~G~~v~LIDTPGl~~ 182 (747)
-.+|+++|..|+|||||++.|+..... ...++ .+.|..... ....+.+.++.||||||..+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 358999999999999999999742111 00111 122322211 12445678999999999965
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.. . .+...+ ..+|++|+|++.... ....+..+++.+.+. ..|.++++||+|...
T Consensus 99 f~-------~----~~~~al--~~aD~~llVvda~~g-~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FG-------G----DVTRAM--RAVDGAIVVVCAVEG-VMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred cH-------H----HHHHHH--HhcCEEEEEEecCCC-CCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 31 1 122333 246999999765421 112344555554332 468899999999873
No 272
>PRK12740 elongation factor G; Reviewed
Probab=98.31 E-value=3.5e-06 Score=100.05 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=68.9
Q ss_pred EcCCCCcHHHHHHHHhCCCCcee--cC---------------CCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhh
Q 004520 128 LGKTGVGKSATINSIFDQTKTET--DA---------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKR 190 (747)
Q Consensus 128 VGk~GvGKSSLINsLlG~~~a~v--s~---------------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~ 190 (747)
+|++|+|||||+|+|+....... +. ..+.|.......+.+.+..+.||||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 69999999999999965433221 11 1233444555667778999999999998532
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 191 NRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 191 ~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.. .....+. .+|++++|++....- ......++..+... ..|+++|+||+|..
T Consensus 74 ~~----~~~~~l~--~aD~vllvvd~~~~~-~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 74 TG----EVERALR--VLDGAVVVVCAVGGV-EPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred HH----HHHHHHH--HhCeEEEEEeCCCCc-CHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 11 2222332 469999997765321 12333444444332 57999999999976
No 273
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.30 E-value=4.1e-06 Score=100.65 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCC---------------ceeeEEEEEeEE----cCeEEEEEeCCCCCCc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP---------------ATDCIREVKGSV----NGIKVTFIDTPGFLPS 183 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~---------------tT~~~~~~~~~~----~G~~v~LIDTPGl~~~ 183 (747)
-+|+|+|+.++|||||+.+|+...........+ .|-......+.+ .+..+.||||||..+.
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 479999999999999999998543322211111 222222222222 3678999999998653
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 184 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 184 ~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
...+.+.+. .+|++++|++.... .......+++.+.+. ..|.|+++||+|...
T Consensus 101 -----------~~~~~~~l~--~~D~avlVvda~~g-~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 101 -----------GGDVTRAMR--AVDGAIVVVDAVEG-VMPQTETVLRQALRE-----RVKPVLFINKVDRLI 153 (731)
T ss_pred -----------HHHHHHHHH--hcCEEEEEEECCCC-CCccHHHHHHHHHHc-----CCCeEEEEECchhhc
Confidence 123333442 46999888765432 123455666654443 357899999999873
No 274
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.29 E-value=2.4e-06 Score=94.59 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC-----------------eEEEEEeCCCCCCccc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSCV 185 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl~~~~~ 185 (747)
+++.|||.||||||||+|+|++.....++.++.+|.++......+.+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999998754777888888877665554433 3689999999987644
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 004520 186 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 216 (747)
Q Consensus 186 ~~~~~~~~il~~ik~~I~~~~~DvVL~V~~l 216 (747)
.+...+...+..++ ..|++++|++.
T Consensus 83 ~g~Glgn~fL~~ir------~~d~l~hVvr~ 107 (368)
T TIGR00092 83 KGEGLGNQFLANIR------EVDIIQHVVRC 107 (368)
T ss_pred cccCcchHHHHHHH------hCCEEEEEEeC
Confidence 33223334444433 35999999765
No 275
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.28 E-value=9.4e-06 Score=82.16 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCCcHHHHHHH-HhCCCCce----ecCCCCcee--e-EEEE-------EeEEcC--eEEEEEeCCCCCCcc
Q 004520 122 SIRILVLGKTGVGKSATINS-IFDQTKTE----TDAFQPATD--C-IREV-------KGSVNG--IKVTFIDTPGFLPSC 184 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINs-LlG~~~a~----vs~~~~tT~--~-~~~~-------~~~~~G--~~v~LIDTPGl~~~~ 184 (747)
.++|+++|.+|||||||++. +.+.. +. ...+.|+.. + .... ...++| ..+.|+||||....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 47999999999999999974 44322 11 122333331 1 1111 112344 46889999997421
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 185 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 185 ~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~--~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
. .. .+ ...+|++++|.+++.... .... .++..+.... -..|+|+|.||+|+..
T Consensus 80 ~----------~~--~~--~~~ad~iilv~d~t~~~S-f~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 D----------RR--FA--YGRSDVVLLCFSIASPNS-LRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRY 134 (195)
T ss_pred h----------hc--cc--CCCCCEEEEEEECCChhH-HHHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence 0 00 02 246899999987754321 1111 2334444332 1469999999999853
No 276
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.24 E-value=1.2e-05 Score=84.05 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 202 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I 202 (747)
||+++|+.|+||||..+.|++.-...-...-+.|.++....... ....+.++|.||-...... ........+ .
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~---~~~~~~~~i---f 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN---YFNSQREEI---F 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT---THTCCHHHH---H
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc---cccccHHHH---H
Confidence 69999999999999999999865443333335566666555543 5569999999998754211 000001111 1
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHH-HHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 203 RRSPPDIVLYFERLDLISMGFSDFP-LLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 203 ~~~~~DvVL~V~~ld~~t~~~~D~~-lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
..+++++||+++..... ..+.. +...+......+-...+-+.+.|+|++.+
T Consensus 75 --~~v~~LIyV~D~qs~~~-~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 75 --SNVGVLIYVFDAQSDDY-DEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp --CTESEEEEEEETT-STC-HHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred --hccCEEEEEEEcccccH-HHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 35689999976652221 12222 22222222222335678899999998853
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.23 E-value=2e-06 Score=86.75 Aligned_cols=115 Identities=13% Similarity=0.219 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeE---EcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGS---VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~---~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
-.|+|+|++|+|||+|...|.......+ .+. .. ..... ..+..+.+||+||-..- ....+..+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~-n~~~~~~~~~~~~~~lvD~PGH~rl-------r~~~~~~~ 70 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----EN-NIAYNVNNSKGKKLRLVDIPGHPRL-------RSKLLDEL 70 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-----SE-EEECCGSSTCGTCECEEEETT-HCC-------CHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cC-CceEEeecCCCCEEEEEECCCcHHH-------HHHHHHhh
Confidence 3699999999999999999987633222 111 11 11111 24668999999997432 22333332
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC----CcccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG----TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG----~~i~k~vIIVLTK~D~l~ 255 (747)
. ++ ..+..|+||++...... .-..+.+.|..++- ..-..|++|++||.|+..
T Consensus 71 ~-~~--~~~k~IIfvvDSs~~~~--~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 71 K-YL--SNAKGIIFVVDSSTDQK--ELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp H-HH--GGEEEEEEEEETTTHHH--HHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred h-ch--hhCCEEEEEEeCccchh--hHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 2 22 24678999976543221 22345555555443 234679999999999874
No 278
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.20 E-value=6.7e-06 Score=83.76 Aligned_cols=118 Identities=22% Similarity=0.178 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
..+|+++|.+|||||++...+++..... .+.|+..+.......++|. .+.|+||+|..+... .-.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~--~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~-----------~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVE--DYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA-----------MRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccc--ccCCCccccceEEEEECCEEEEEEEEcCCCcccChH-----------HHH
Confidence 5789999999999999999888754333 2556665666666666654 567999999432210 111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 200 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.++ ...|.+++|.+++....-..-..+.+.|.+..+.+ +.|+|+|.||+|+..
T Consensus 70 ~~~--~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 70 LYI--RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLER 122 (196)
T ss_pred Hhh--ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchh
Confidence 233 34699999987765432112234555554443433 579999999999874
No 279
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.16 E-value=1.8e-05 Score=78.17 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=79.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
..+||+++|..|+||||+++.+.|+..-.+ ..|...+-...++.+.++.++|.-|-.. ....+ +.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i----~pt~gf~Iktl~~~~~~L~iwDvGGq~~--------lr~~W---~n 79 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTI----SPTLGFQIKTLEYKGYTLNIWDVGGQKT--------LRSYW---KN 79 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcccc----CCccceeeEEEEecceEEEEEEcCCcch--------hHHHH---HH
Confidence 379999999999999999999999873333 3466677777788999999999988531 22333 23
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l 254 (747)
+.. ..|.+++|++...... -......+++.+.. -++.+++|+.||.|..
T Consensus 80 Yfe--stdglIwvvDssD~~r---~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 80 YFE--STDGLIWVVDSSDRMR---MQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred hhh--ccCeEEEEEECchHHH---HHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 332 4599999976532221 22345555555442 2468999999999976
No 280
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.15 E-value=6.6e-06 Score=88.71 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
..-.|+|||.||+|||||||+|++.....-... ..|-++....... .|..+.+.||-||... .......++.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drL-FATLDpT~h~a~Lpsg~~vlltDTvGFisd------LP~~LvaAF~ 249 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRL-FATLDPTLHSAHLPSGNFVLLTDTVGFISD------LPIQLVAAFQ 249 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchh-heeccchhhhccCCCCcEEEEeechhhhhh------CcHHHHHHHH
Confidence 456899999999999999999996443333221 2344443333322 6889999999999743 2344445554
Q ss_pred HHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-c--ccccEEEEEeccCCCC
Q 004520 200 KFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-A--IWFNTILVMTHSSSTL 255 (747)
Q Consensus 200 ~~I~~-~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~--i~k~vIIVLTK~D~l~ 255 (747)
..+.. ..+|++|.|.+++......+...++..+..+ |- + ...++|=|-||.|.-+
T Consensus 250 ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 250 ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhcccccccc
Confidence 44433 3679999999888776544455666666664 32 1 2345667888988753
No 281
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.13 E-value=1.2e-06 Score=89.15 Aligned_cols=118 Identities=23% Similarity=0.306 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC------CCCceec--CCCCcee----------eEEEEEe-----------------EE
Q 004520 123 IRILVLGKTGVGKSATINSIFD------QTKTETD--AFQPATD----------CIREVKG-----------------SV 167 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG------~~~a~vs--~~~~tT~----------~~~~~~~-----------------~~ 167 (747)
-.|++||++||||||++-.|.. +.+..++ .+..... .+--+.. ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4689999999999999988842 2222221 1211100 1111110 01
Q ss_pred cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 168 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 168 ~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
.+..++||||||.... +...+.++++++....++-+++|++..... .+...+....+.++ ..=++
T Consensus 82 ~~~D~vlIDT~Gr~~~-------d~~~~~el~~~~~~~~~~~~~LVlsa~~~~---~~~~~~~~~~~~~~-----~~~lI 146 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPR-------DEELLEELKKLLEALNPDEVHLVLSATMGQ---EDLEQALAFYEAFG-----IDGLI 146 (196)
T ss_dssp TTSSEEEEEE-SSSST-------HHHHHHHHHHHHHHHSSSEEEEEEEGGGGG---HHHHHHHHHHHHSS-----TCEEE
T ss_pred cCCCEEEEecCCcchh-------hHHHHHHHHHHhhhcCCccceEEEecccCh---HHHHHHHHHhhccc-----CceEE
Confidence 2457999999998644 344455666655555678888886665432 34444545555443 34567
Q ss_pred EeccCCCC
Q 004520 248 MTHSSSTL 255 (747)
Q Consensus 248 LTK~D~l~ 255 (747)
+||.|...
T Consensus 147 lTKlDet~ 154 (196)
T PF00448_consen 147 LTKLDETA 154 (196)
T ss_dssp EESTTSSS
T ss_pred EEeecCCC
Confidence 99999874
No 282
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.12 E-value=4e-05 Score=87.32 Aligned_cols=119 Identities=20% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc--------------e----------e-c-----CCCCceeeEEEEEeEEcC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKT--------------E----------T-D-----AFQPATDCIREVKGSVNG 169 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a--------------~----------v-s-----~~~~tT~~~~~~~~~~~G 169 (747)
...++|+++|..++|||||+-+|+-.... . + + ...+.|-+.....++..+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 45689999999999999999888621100 0 0 0 012345566666667788
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC--C-CcHHHHHHH--HHHhCCcccccE
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG--F-SDFPLLKLM--TEVFGTAIWFNT 244 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~--~-~D~~lLk~L--~e~fG~~i~k~v 244 (747)
+.+.||||||-.+ ....+...+ ..+|++++|++...-... . ...++.+.+ ...+| -+++
T Consensus 85 ~~i~liDtPGh~d-----------f~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g---i~~i 148 (447)
T PLN00043 85 YYCTVIDAPGHRD-----------FIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG---VKQM 148 (447)
T ss_pred EEEEEEECCCHHH-----------HHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC---CCcE
Confidence 9999999999632 222333333 367999999776531100 0 011222222 22223 2367
Q ss_pred EEEEeccCCC
Q 004520 245 ILVMTHSSST 254 (747)
Q Consensus 245 IIVLTK~D~l 254 (747)
|+++||+|+.
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8899999975
No 283
>PRK13768 GTPase; Provisional
Probab=98.10 E-value=5.2e-06 Score=87.56 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=46.7
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
..++++||||..+... .......+.+++.....+++++|++..... +..+......+....-....+|+|+|+|
T Consensus 97 ~~~~~~d~~g~~~~~~-----~~~~~~~~~~~l~~~~~~~ii~liD~~~~~-~~~d~~~~~~l~~~~~~~~~~~~i~v~n 170 (253)
T PRK13768 97 ADYVLVDTPGQMELFA-----FRESGRKLVERLSGSSKSVVVFLIDAVLAK-TPSDFVSLLLLALSVQLRLGLPQIPVLN 170 (253)
T ss_pred CCEEEEeCCcHHHHHh-----hhHHHHHHHHHHHhcCCeEEEEEechHHhC-CHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3799999999865421 122223333444332378999997664322 1234333333321111123689999999
Q ss_pred ccCCCCCC
Q 004520 250 HSSSTLPE 257 (747)
Q Consensus 250 K~D~l~pd 257 (747)
|+|...+.
T Consensus 171 K~D~~~~~ 178 (253)
T PRK13768 171 KADLLSEE 178 (253)
T ss_pred hHhhcCch
Confidence 99998654
No 284
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.10 E-value=9.3e-06 Score=88.08 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=67.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC-----------------eEEEEEeCCCCCC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLP 182 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl~~ 182 (747)
...++|.|||.||||||||+|+|+..... ...+|.+|-++......+.. -.+.++|++|+..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 35789999999999999999999986655 77888999887665533211 2689999999998
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 217 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld 217 (747)
....++......+..++ .+|.++.|++..
T Consensus 97 GAs~G~GLGN~FLs~iR------~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIR------HVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhh------hccceeEEEEec
Confidence 86665455555555544 358888887653
No 285
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=4.2e-05 Score=78.24 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=76.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHH
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
..+..++|+++|.+|||||.++-.+... .+..+-....--+......+.+|. .+.++||+|-.. ...+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer--------f~ti~ 78 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER--------FRTIT 78 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhc-cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh--------HHHHH
Confidence 3455689999999999999999888753 333222111111333344455665 568999999632 22222
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
..+. .+++.+++|.++.....-.....+++.|.+. .+-..+.++|-||+|...
T Consensus 79 ---~sYy--rgA~gi~LvyDitne~Sfeni~~W~~~I~e~--a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 79 ---TAYY--RGAMGILLVYDITNEKSFENIRNWIKNIDEH--ASDDVVKILVGNKCDLEE 131 (207)
T ss_pred ---HHHH--hhcCeeEEEEEccchHHHHHHHHHHHHHHhh--CCCCCcEEEeeccccccc
Confidence 2333 3678999887775432212344566666665 333689999999999864
No 286
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.01 E-value=1.3e-05 Score=89.33 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC--ceecCCCCceeeEEEEE-----------------------------eEEcCe
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTK--TETDAFQPATDCIREVK-----------------------------GSVNGI 170 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~--a~vs~~~~tT~~~~~~~-----------------------------~~~~G~ 170 (747)
.-.|++||+|||||+|++-.|..+-. .......-.|++..++- ......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55799999999999999999965432 11112223454444332 012345
Q ss_pred EEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEec
Q 004520 171 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 250 (747)
Q Consensus 171 ~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK 250 (747)
.++||||.|... .+.....+++.++..+...-+.+|++.+... ..++.+.+.|+. -...-++|||
T Consensus 283 d~ILVDTaGrs~-------~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~------~dlkei~~~f~~--~~i~~~I~TK 347 (407)
T COG1419 283 DVILVDTAGRSQ-------YDKEKIEELKELIDVSHSIEVYLVLSATTKY------EDLKEIIKQFSL--FPIDGLIFTK 347 (407)
T ss_pred CEEEEeCCCCCc-------cCHHHHHHHHHHHhccccceEEEEEecCcch------HHHHHHHHHhcc--CCcceeEEEc
Confidence 899999999853 3455667777777666334445554444322 346666666652 2344568899
Q ss_pred cCCCC
Q 004520 251 SSSTL 255 (747)
Q Consensus 251 ~D~l~ 255 (747)
.|...
T Consensus 348 lDET~ 352 (407)
T COG1419 348 LDETT 352 (407)
T ss_pred ccccC
Confidence 99874
No 287
>PRK14974 cell division protein FtsY; Provisional
Probab=97.99 E-value=1.3e-05 Score=87.96 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC------CCCceec-C-CCCce-e-----------eEEEEE---------------e
Q 004520 121 FSIRILVLGKTGVGKSATINSIFD------QTKTETD-A-FQPAT-D-----------CIREVK---------------G 165 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG------~~~a~vs-~-~~~tT-~-----------~~~~~~---------------~ 165 (747)
.+..|+++|++|+||||++..|.. .....+. + +.... . .+.... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999999888853 2222121 1 11100 0 000000 0
Q ss_pred EEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEE
Q 004520 166 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 245 (747)
Q Consensus 166 ~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vI 245 (747)
...+..++||||||.... +...+.++++..+...+|.+++|++.. +. ......++.+.+.. ...-
T Consensus 219 ~~~~~DvVLIDTaGr~~~-------~~~lm~eL~~i~~~~~pd~~iLVl~a~--~g-~d~~~~a~~f~~~~-----~~~g 283 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHT-------DANLMDELKKIVRVTKPDLVIFVGDAL--AG-NDAVEQAREFNEAV-----GIDG 283 (336)
T ss_pred HhCCCCEEEEECCCccCC-------cHHHHHHHHHHHHhhCCceEEEeeccc--cc-hhHHHHHHHHHhcC-----CCCE
Confidence 113567999999999753 345566676666656789999996543 21 12223333333332 3467
Q ss_pred EEEeccCCCCC
Q 004520 246 LVMTHSSSTLP 256 (747)
Q Consensus 246 IVLTK~D~l~p 256 (747)
+|+||.|..+.
T Consensus 284 iIlTKlD~~~~ 294 (336)
T PRK14974 284 VILTKVDADAK 294 (336)
T ss_pred EEEeeecCCCC
Confidence 79999998753
No 288
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.99 E-value=3.4e-05 Score=97.20 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=76.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceec-------CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETD-------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 196 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs-------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~ 196 (747)
=.+|||++|+||||+|+.- |-+..... ...+.|+.|.+... .+-++|||+|.+-............+.
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~----~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFT----DEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEec----CCEEEEcCCCccccCCCcccccHHHHH
Confidence 3789999999999999876 43321110 11345677776652 456899999977543211112233344
Q ss_pred HHHHHHh----cCCCCEEEEEEeccCccC-CCCc--------HHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 197 SVKKFIR----RSPPDIVLYFERLDLISM-GFSD--------FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 197 ~ik~~I~----~~~~DvVL~V~~ld~~t~-~~~D--------~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.+-+.++ ..+++.||++++++..-. +..+ +.-+..+.+.+| +..|+.||+||+|+++
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg--~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG--ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecchhhc
Confidence 4444443 346899999987764422 1111 123344555555 4589999999999883
No 289
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=5.1e-05 Score=76.98 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce--eeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT--DCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT--~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
..-++|+|+|-+|||||=|+-.+.+..-.... ..| .+......+++|. ++.|+||+|-. +-..+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~---~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE--------RFrti- 74 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESY---ISTIGVDFKIRTVELDGKTIKLQIWDTAGQE--------RFRTI- 74 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhh---cceeeeEEEEEEeeecceEEEEEeeeccccH--------HHhhh-
Confidence 44589999999999999999988775433221 112 2344444555564 68999999952 11222
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l~ 255 (747)
+..+- ..+|.||+|.++..... -..+-.+|.++-. ..-..|.++|-||+|+..
T Consensus 75 --t~syY--R~ahGii~vyDiT~~~S---F~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 75 --TSSYY--RGAHGIIFVYDITKQES---FNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred --hHhhc--cCCCeEEEEEEcccHHH---hhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 22222 36899999988765331 1233444444322 122468999999999864
No 290
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=8.8e-06 Score=90.84 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC------CCceec--CCCC-c-----e----eeEEEEEe-------------E-EcC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQ------TKTETD--AFQP-A-----T----DCIREVKG-------------S-VNG 169 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~------~~a~vs--~~~~-t-----T----~~~~~~~~-------------~-~~G 169 (747)
+-.|+++|++||||||++..|... ....+. .+.. . + ..+..+.. . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 468999999999999999999631 122111 1110 0 0 00000000 0 014
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
..++||||||.... +...+.++.+.+....+|.+++|++..... +-+..+.+.|.. -...=+|||
T Consensus 321 ~DvVLIDTaGRs~k-------d~~lm~EL~~~lk~~~PdevlLVLsATtk~------~d~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 321 VDYILIDTAGKNYR-------ASETVEEMIETMGQVEPDYICLTLSASMKS------KDMIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred CCEEEEeCccccCc-------CHHHHHHHHHHHhhcCCCeEEEEECCccCh------HHHHHHHHHhcC--CCCCEEEEE
Confidence 58999999998543 344566677777666788888885433221 123334444543 234567899
Q ss_pred ccCCCCC
Q 004520 250 HSSSTLP 256 (747)
Q Consensus 250 K~D~l~p 256 (747)
|.|....
T Consensus 386 KLDET~k 392 (436)
T PRK11889 386 KFDETAS 392 (436)
T ss_pred cccCCCC
Confidence 9998753
No 291
>PRK01889 GTPase RsgA; Reviewed
Probab=97.98 E-value=6.2e-06 Score=91.21 Aligned_cols=61 Identities=28% Similarity=0.393 Sum_probs=41.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCC-------CceeeEEEEEeEEcCeEEEEEeCCCCCCccc
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPSCV 185 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~-------~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~ 185 (747)
.-+++++|.+|+|||||+|.|+|.....++.+. .+|+....+... .+ ..++||||+.....
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~-~~--~~l~DtpG~~~~~l 262 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP-SG--GLLIDTPGMRELQL 262 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec-CC--CeecCCCchhhhcc
Confidence 347999999999999999999997666554322 233333333222 12 36889999976644
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.96 E-value=4.6e-05 Score=83.70 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 004520 120 DFSIRILVLGKTGVGKSATINSIF 143 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLl 143 (747)
...+.|.|.|.||+|||||++.|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999874
No 293
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=2.8e-05 Score=85.00 Aligned_cols=129 Identities=21% Similarity=0.301 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceec-CCCCceeeEEEEEe-----EEcC-------------------------
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKG-----SVNG------------------------- 169 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs-~~~~tT~~~~~~~~-----~~~G------------------------- 169 (747)
..--|+++|.-..||||+||.|+..+..-.- ...|+|.....+.. .+.|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3456999999999999999999987644221 12344433222210 0000
Q ss_pred ----------eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc
Q 004520 170 ----------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 239 (747)
Q Consensus 170 ----------~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~ 239 (747)
..|.||||||+...........-.....+..|.. ++|.|+++.+..-... .| ++-+.|....|.+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFae--R~D~IiLlfD~hKLDI--sd-Ef~~vi~aLkG~E 211 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAE--RVDRIILLFDAHKLDI--SD-EFKRVIDALKGHE 211 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHH--hccEEEEEechhhccc--cH-HHHHHHHHhhCCc
Confidence 2689999999987643212222333444555553 5799998855443333 22 2333344444433
Q ss_pred ccccEEEEEeccCCCCC
Q 004520 240 IWFNTILVMTHSSSTLP 256 (747)
Q Consensus 240 i~k~vIIVLTK~D~l~p 256 (747)
..+=||+||+|.+.+
T Consensus 212 --dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDT 226 (532)
T ss_pred --ceeEEEeccccccCH
Confidence 456789999998854
No 294
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.95 E-value=1.2e-05 Score=84.13 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
..-||++||.|.||||||+..|++. ......+..+|-.|......++|-.+.++|.||+.+....+......+....
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T-~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA-- 137 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITST-HSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA-- 137 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcc-hhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe--
Confidence 4569999999999999999999974 3444567789999999999999999999999999887544322222221111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 238 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~ 238 (747)
..+|+||.|.+..... ..+.+++.=.+..|.
T Consensus 138 ----rtaDlilMvLDatk~e---~qr~~le~ELe~vGi 168 (364)
T KOG1486|consen 138 ----RTADLILMVLDATKSE---DQREILEKELEAVGI 168 (364)
T ss_pred ----ecccEEEEEecCCcch---hHHHHHHHHHHHhce
Confidence 2579999995543222 234466655555564
No 295
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.93 E-value=1.2e-05 Score=76.46 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
||++||..|+||+||.|+|-|..... +..+.+.+.-. -.|||||-+-. +....+++....
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--------kKTQAve~~d~----~~IDTPGEy~~-------~~~~Y~aL~tt~- 62 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--------KKTQAVEFNDK----GDIDTPGEYFE-------HPRWYHALITTL- 62 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--------cccceeeccCc----cccCCchhhhh-------hhHHHHHHHHHh-
Confidence 79999999999999999999965321 22233332112 37999997632 344445554333
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+.+|++++|..++..... +--.+... +.+++|=|+||+|+..
T Consensus 63 -~dadvi~~v~~and~~s~-----f~p~f~~~----~~k~vIgvVTK~DLae 104 (148)
T COG4917 63 -QDADVIIYVHAANDPESR-----FPPGFLDI----GVKKVIGVVTKADLAE 104 (148)
T ss_pred -hccceeeeeecccCcccc-----CCcccccc----cccceEEEEecccccc
Confidence 468999999766543221 11122233 2467999999999984
No 296
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.93 E-value=3.7e-05 Score=88.17 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=82.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
....+||+|+|-.|+||||||-+|+.++.... ...-+...-+ ...+.+..+..++||..-.+ ......++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~-------~~~~l~~E 76 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSD-------DRLCLRKE 76 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccc-------hhHHHHHH
Confidence 34679999999999999999999998765432 1111111111 12223456689999984321 12333444
Q ss_pred HHHHHhcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~-~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
++ ++|+|++|...+. .+.+.....+|=.++..+|.....|+|+|-||+|....
T Consensus 77 ir------kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 77 IR------KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred Hh------hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 43 4689988876655 34333445678888888888889999999999998743
No 297
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=8.7e-05 Score=82.59 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh---------------------CCCCcee---------cCCCCceeeEEEEEeEEcC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIF---------------------DQTKTET---------DAFQPATDCIREVKGSVNG 169 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLl---------------------G~~~a~v---------s~~~~tT~~~~~~~~~~~G 169 (747)
...++++++|.+.+|||||+-.|+ |+.-+.. -...+.|-+.....++.+-
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 356899999999999999998884 2221111 1123556666666777777
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc------CCCCcHHHHHHHHHHhCCccccc
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS------MGFSDFPLLKLMTEVFGTAIWFN 243 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t------~~~~D~~lLk~L~e~fG~~i~k~ 243 (747)
+.++++|+||-++. +.+.+..+ +++|+.++|++..... ...+.+. --.|.+.+| -..
T Consensus 85 ~~~tIiDaPGHrdF----------vknmItGa---sqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG---i~~ 147 (428)
T COG5256 85 YNFTIIDAPGHRDF----------VKNMITGA---SQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG---IKQ 147 (428)
T ss_pred ceEEEeeCCchHHH----------HHHhhcch---hhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC---Cce
Confidence 88999999995432 22223222 4689999987654331 1112222 224455556 468
Q ss_pred EEEEEeccCCCC
Q 004520 244 TILVMTHSSSTL 255 (747)
Q Consensus 244 vIIVLTK~D~l~ 255 (747)
.||++||+|...
T Consensus 148 lIVavNKMD~v~ 159 (428)
T COG5256 148 LIVAVNKMDLVS 159 (428)
T ss_pred EEEEEEcccccc
Confidence 999999999884
No 298
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5.5e-05 Score=88.10 Aligned_cols=119 Identities=17% Similarity=0.287 Sum_probs=71.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEE------------------------------------
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK------------------------------------ 164 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~------------------------------------ 164 (747)
...+|++.|.+++||||+||+++-++....+ ..++|.....+.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g-~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSG-IGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCccc-ccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3578999999999999999999865544332 223332211111
Q ss_pred -------eEE-cC------eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHH
Q 004520 165 -------GSV-NG------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLK 230 (747)
Q Consensus 165 -------~~~-~G------~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk 230 (747)
..| ++ ..+.+||.||+.-.... -..+.++. ..+|+++||...... ....+.+++.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~--------tswid~~c--ldaDVfVlV~NaEnt-lt~sek~Ff~ 255 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL--------TSWIDSFC--LDADVFVLVVNAENT-LTLSEKQFFH 255 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhh--------hHHHHHHh--hcCCeEEEEecCccH-hHHHHHHHHH
Confidence 111 11 26899999999754221 12233332 257999999755422 1124555555
Q ss_pred HHHHHhCCcccccEEEEEeccCCCCC
Q 004520 231 LMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 231 ~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
...+. ..++.|+.||||....
T Consensus 256 ~vs~~-----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 256 KVSEE-----KPNIFILNNKWDASAS 276 (749)
T ss_pred Hhhcc-----CCcEEEEechhhhhcc
Confidence 54443 5677788899998743
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=2.9e-05 Score=86.37 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG 144 (747)
...-.++++|++||||||++..|.+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3345899999999999999999965
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.85 E-value=4.7e-05 Score=81.38 Aligned_cols=121 Identities=26% Similarity=0.294 Sum_probs=67.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCCceec-C-CCCc---------ee-eEEEEEe-----------------
Q 004520 121 FSIRILVLGKTGVGKSATINSIF------DQTKTETD-A-FQPA---------TD-CIREVKG----------------- 165 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLl------G~~~a~vs-~-~~~t---------T~-~~~~~~~----------------- 165 (747)
..-.|+++|++|+||||++..|. |..+..++ + +... .. ....+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 34578899999999999998884 22222221 1 1110 00 0110100
Q ss_pred EEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcC------CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc
Q 004520 166 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS------PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 239 (747)
Q Consensus 166 ~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~------~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~ 239 (747)
...+..++||||||.... +...+.+++++.... .+|.+++|++.... ..+......+.+.+
T Consensus 151 ~~~~~D~ViIDT~G~~~~-------d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---~~~~~~~~~f~~~~--- 217 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQN-------KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---QNALEQAKVFNEAV--- 217 (272)
T ss_pred HHCCCCEEEEeCCCCCcc-------hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---HHHHHHHHHHHhhC---
Confidence 124578999999998653 234444554443322 38889999766421 12333333333332
Q ss_pred ccccEEEEEeccCCCCC
Q 004520 240 IWFNTILVMTHSSSTLP 256 (747)
Q Consensus 240 i~k~vIIVLTK~D~l~p 256 (747)
...-+|+||.|....
T Consensus 218 --~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 218 --GLTGIILTKLDGTAK 232 (272)
T ss_pred --CCCEEEEEccCCCCC
Confidence 356789999998753
No 301
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00016 Score=73.44 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=70.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCc-eeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..+|+++|..+|||+|||+...-...-.. +.++ --+.....+.+.|+ .+.|+||+|-. .....+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~--YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE-----------RFrsli 88 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RFRSLI 88 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhccc--ccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------HHhhhh
Confidence 48999999999999999999974322111 1111 11233333344554 67899999952 222233
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
-.+++ .+.++++|.++.....-..-.+.++.+....|.+ ...+++|-||.|+..+.
T Consensus 89 psY~R--ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 89 PSYIR--DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKR 144 (221)
T ss_pred hhhcc--CCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchh
Confidence 34554 4577777766654321112234444444444432 25667889999998653
No 302
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=4.4e-05 Score=91.36 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCc-----eecCCCCceee------------EEEEEe--------------EEcCe
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKT-----ETDAFQPATDC------------IREVKG--------------SVNGI 170 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a-----~vs~~~~tT~~------------~~~~~~--------------~~~G~ 170 (747)
.-.|++||++||||||++..|.+.-.. .+.-+...|.+ ...+.. ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 347899999999999999999764211 11000000100 000000 12345
Q ss_pred EEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcc-cccEEEEEe
Q 004520 171 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI-WFNTILVMT 249 (747)
Q Consensus 171 ~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i-~k~vIIVLT 249 (747)
.++||||||.... +...++++........++-+++|++.... ...++.+.+.|.... -...=+|||
T Consensus 265 D~VLIDTAGRs~~-------d~~l~eel~~l~~~~~p~e~~LVLsAt~~------~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 265 HLVLIDTVGMSQR-------DRNVSEQIAMLCGVGRPVRRLLLLNAASH------GDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CEEEEeCCCCCcc-------CHHHHHHHHHHhccCCCCeEEEEECCCCc------HHHHHHHHHHHhhcccCCCCEEEEe
Confidence 7999999998643 23355555554444467778888544321 234555555553211 124467899
Q ss_pred ccCCCCC
Q 004520 250 HSSSTLP 256 (747)
Q Consensus 250 K~D~l~p 256 (747)
|.|....
T Consensus 332 KLDEt~~ 338 (767)
T PRK14723 332 KLDEATH 338 (767)
T ss_pred ccCCCCC
Confidence 9998753
No 303
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.81 E-value=0.00023 Score=71.58 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcee-----c-CCC---CceeeEEEEEeEEcC-eEEEEEeCCCCCCcccchhhh
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTET-----D-AFQ---PATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKR 190 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~v-----s-~~~---~tT~~~~~~~~~~~G-~~v~LIDTPGl~~~~~~~~~~ 190 (747)
...+|+|+|+-|+||+|++.++.-+....+ + ... ++|.-..-......+ ..+.|+||||-..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-------- 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-------- 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence 457999999999999999999987765433 1 111 234333334445555 7899999999632
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 191 NRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 191 ~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
-..++..+. .++...+++++..+.. ...+..+++.+.... ..|++|.+||-|+...
T Consensus 81 F~fm~~~l~-----~ga~gaivlVDss~~~-~~~a~~ii~f~~~~~----~ip~vVa~NK~DL~~a 136 (187)
T COG2229 81 FKFMWEILS-----RGAVGAIVLVDSSRPI-TFHAEEIIDFLTSRN----PIPVVVAINKQDLFDA 136 (187)
T ss_pred HHHHHHHHh-----CCcceEEEEEecCCCc-chHHHHHHHHHhhcc----CCCEEEEeeccccCCC
Confidence 233333222 2445444443332221 124456666665542 2799999999998743
No 304
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.80 E-value=0.00016 Score=82.71 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceec--CCCCceeeE----------------EE---EE--------e-----
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDCI----------------RE---VK--------G----- 165 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs--~~~~tT~~~----------------~~---~~--------~----- 165 (747)
...++|+++|.-..|||||+.+|+|....... -..+-|-+. .. .. .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999985332211 001111100 00 00 0
Q ss_pred -EEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccE
Q 004520 166 -SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 244 (747)
Q Consensus 166 -~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~v 244 (747)
..-.+.+.||||||.. .....+...+ ..+|++++|++.+......+..+.+. +.+.+| -+++
T Consensus 112 ~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg---i~~i 174 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-----------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMK---LKHI 174 (460)
T ss_pred cccccceEeeeeCCCHH-----------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcC---CCcE
Confidence 0013578999999952 2222322222 35799999987764211112223332 333444 2578
Q ss_pred EEEEeccCCCC
Q 004520 245 ILVMTHSSSTL 255 (747)
Q Consensus 245 IIVLTK~D~l~ 255 (747)
|+|+||+|+..
T Consensus 175 IVvlNKiDlv~ 185 (460)
T PTZ00327 175 IILQNKIDLVK 185 (460)
T ss_pred EEEEecccccC
Confidence 99999999873
No 305
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=6.5e-05 Score=84.84 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC-----ceecCCCCceee------------EEEEE--------------eEEcC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTK-----TETDAFQPATDC------------IREVK--------------GSVNG 169 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~-----a~vs~~~~tT~~------------~~~~~--------------~~~~G 169 (747)
..-.|++||++|+|||||++.|.+... ..++-+...|.+ ...+. ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 345899999999999999998876411 111100000000 00000 12245
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
..+++|||+|.... +.....++..+.....++-+++|++.... ...+..+...|.. -...=+|+|
T Consensus 270 ~d~VLIDTaGrsqr-------d~~~~~~l~~l~~~~~~~~~~LVl~at~~------~~~~~~~~~~f~~--~~~~~~I~T 334 (420)
T PRK14721 270 KHMVLIDTVGMSQR-------DQMLAEQIAMLSQCGTQVKHLLLLNATSS------GDTLDEVISAYQG--HGIHGCIIT 334 (420)
T ss_pred CCEEEecCCCCCcc-------hHHHHHHHHHHhccCCCceEEEEEcCCCC------HHHHHHHHHHhcC--CCCCEEEEE
Confidence 67899999998643 23344555544332345566777444322 2344555555542 234557899
Q ss_pred ccCCCCC
Q 004520 250 HSSSTLP 256 (747)
Q Consensus 250 K~D~l~p 256 (747)
|.|....
T Consensus 335 KlDEt~~ 341 (420)
T PRK14721 335 KVDEAAS 341 (420)
T ss_pred eeeCCCC
Confidence 9998753
No 306
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.78 E-value=8.4e-05 Score=74.78 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=69.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcee----cCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTET----DAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRK 193 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v----s~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~ 193 (747)
...|+|.++|-+|||||||+|.....+...- -.....|+++ .++++ .+.++||+|-...
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev-----~Vd~~~vtlQiWDTAGQERF---------- 71 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV-----QVDDRSVTLQIWDTAGQERF---------- 71 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE-----EEcCeEEEEEEEecccHHHh----------
Confidence 3468999999999999999999986543221 1112344443 33443 5689999995322
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC------CcccccEEEEEeccCCC
Q 004520 194 IMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG------TAIWFNTILVMTHSSST 254 (747)
Q Consensus 194 il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG------~~i~k~vIIVLTK~D~l 254 (747)
..+. ..--.++|++++|.+++... ...-|+.-++.|- ..-..|+||+-||.|.-
T Consensus 72 --qsLg-~aFYRgaDcCvlvydv~~~~----Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 72 --QSLG-VAFYRGADCCVLVYDVNNPK----SFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred --hhcc-cceecCCceEEEEeecCChh----hhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 1111 01114789999997776443 1122333333331 12367999999999975
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=3.3e-05 Score=85.97 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC------CCCcee--cCCCCcee----------eEEEEEe-E-------------Ec
Q 004520 121 FSIRILVLGKTGVGKSATINSIFD------QTKTET--DAFQPATD----------CIREVKG-S-------------VN 168 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG------~~~a~v--s~~~~tT~----------~~~~~~~-~-------------~~ 168 (747)
..-.|+++|++||||||++..|.. ..+..+ +.+.+... .+..+.. . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 345789999999999999998853 222222 12221110 0000000 0 02
Q ss_pred CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEE
Q 004520 169 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 248 (747)
Q Consensus 169 G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVL 248 (747)
+..++||||||.... +...+.++..+.....+|.+++|.+. .. ....+.+.+ +.|.. -...-+|+
T Consensus 285 ~~D~VLIDTAGr~~~-------d~~~l~EL~~l~~~~~p~~~~LVLsa--g~---~~~d~~~i~-~~f~~--l~i~glI~ 349 (407)
T PRK12726 285 CVDHILIDTVGRNYL-------AEESVSEISAYTDVVHPDLTCFTFSS--GM---KSADVMTIL-PKLAE--IPIDGFII 349 (407)
T ss_pred CCCEEEEECCCCCcc-------CHHHHHHHHHHhhccCCceEEEECCC--cc---cHHHHHHHH-HhcCc--CCCCEEEE
Confidence 468999999998643 34556677776665677888888433 22 122344333 33431 23556789
Q ss_pred eccCCCCC
Q 004520 249 THSSSTLP 256 (747)
Q Consensus 249 TK~D~l~p 256 (747)
||.|....
T Consensus 350 TKLDET~~ 357 (407)
T PRK12726 350 TKMDETTR 357 (407)
T ss_pred EcccCCCC
Confidence 99998743
No 308
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=7.5e-05 Score=86.21 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG 144 (747)
......-.|+|+|++|+||||++..|..
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444566899999999999999999864
No 309
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00022 Score=81.60 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEE-cCeEEEEEeCCCCCCcccchhhhhHHHH
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
...+++..|-|+|..--||+||+.+|-+..++..- ..+.|..+-.+..+. .|..++|.||||--- +
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E-~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA------------F 214 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE-AGGITQHIGAFTVTLPSGKSITFLDTPGHAA------------F 214 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhh-cCCccceeceEEEecCCCCEEEEecCCcHHH------------H
Confidence 34456778999999999999999999987666543 457788876665544 789999999999521 1
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+++.. .-.-.|++++|+..|.-- -.++++.|.-. ++...|+||.+||+|..
T Consensus 215 ~aMRaR-GA~vtDIvVLVVAadDGV----mpQT~EaIkhA--k~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 215 SAMRAR-GANVTDIVVLVVAADDGV----MPQTLEAIKHA--KSANVPIVVAINKIDKP 266 (683)
T ss_pred HHHHhc-cCccccEEEEEEEccCCc----cHhHHHHHHHH--HhcCCCEEEEEeccCCC
Confidence 222210 001368999998776432 22455555544 34578999999999965
No 310
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00011 Score=75.28 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=75.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHH
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
..+.-++|+++|-+|||||-|+-.... +.+...+....-.+.......++|+ +..|+||+|-..- ..+.
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftr-nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy--------rAit 80 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTR-NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY--------RAIT 80 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcc-cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhh--------cccc
Confidence 344568999999999999999988774 3333322212222344444556665 5689999996322 1111
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l~ 255 (747)
.+ +- .++...|+|.++..... -..+.++|.+... .+....+++|-||+|+..
T Consensus 81 Sa---YY--rgAvGAllVYDITr~~T---fenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 SA---YY--RGAVGALLVYDITRRQT---FENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred ch---hh--cccceeEEEEechhHHH---HHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 11 11 36788899987764321 2255566655543 345688999999999875
No 311
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.75 E-value=7.4e-05 Score=81.63 Aligned_cols=120 Identities=27% Similarity=0.293 Sum_probs=64.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC------CCceec-C-CCCc---------e-eeEEEEEe-----------------
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD-A-FQPA---------T-DCIREVKG----------------- 165 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~------~~a~vs-~-~~~t---------T-~~~~~~~~----------------- 165 (747)
..-.|+++|++|+||||++..|.+. .+..++ + +... . ..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999988542 222221 1 1100 0 00111100
Q ss_pred EEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCc
Q 004520 166 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 239 (747)
Q Consensus 166 ~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~------~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~ 239 (747)
...+..++||||||..... ...+.++++..+ .+.++.+++|++..... .+..-.....+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~-------~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---~~~~~a~~f~~~---- 258 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK-------TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---NALSQAKAFHEA---- 258 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC-------HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---HHHHHHHHHHhh----
Confidence 1245689999999997542 222333333222 23578888886655221 222222222222
Q ss_pred ccccEEEEEeccCCCC
Q 004520 240 IWFNTILVMTHSSSTL 255 (747)
Q Consensus 240 i~k~vIIVLTK~D~l~ 255 (747)
-...-+|+||.|...
T Consensus 259 -~~~~giIlTKlD~t~ 273 (318)
T PRK10416 259 -VGLTGIILTKLDGTA 273 (318)
T ss_pred -CCCCEEEEECCCCCC
Confidence 135678999999764
No 312
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00016 Score=73.25 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceee-EEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~-~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..++|+|+|.+|||||||+=.......-.. ..+++-- .......+++ .++.++||+|...-. .
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~------------s 69 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH------------S 69 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccc--cccccccEEEEEEEEeCCcEEEEEEEEcCCccccc------------c
Confidence 468999999999999999977754322111 1121111 1112222333 678899999975321 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEE--EEEeccCCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI--LVMTHSSSTLP 256 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vI--IVLTK~D~l~p 256 (747)
+.. +--.++++.|+|.+++....-..-+..++.|++.- ..+++ +|-||+|+..+
T Consensus 70 lap-MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~----~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 70 LAP-MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA----SPNIVIALVGNKADLLER 125 (200)
T ss_pred ccc-ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC----CCCeEEEEecchhhhhhc
Confidence 111 11146889999987764331112234555555542 23344 59999999863
No 313
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.67 E-value=0.00032 Score=68.80 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-C--eEEEEEeCCCCCCcccchhhhhHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-G--IKVTFIDTPGFLPSCVRNVKRNRKIML 196 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G--~~v~LIDTPGl~~~~~~~~~~~~~il~ 196 (747)
...++|+|+|.-+|||++++-.|+=.+...-....++..++.....+-+ | ..++|.||.|+..... +.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~-------eL-- 77 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ-------EL-- 77 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh-------hh--
Confidence 4568999999999999999988875454444556666666655554432 2 3789999999975411 11
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCCC
Q 004520 197 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 197 ~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
=+.++ .-+|.+++|.+...... .+-..+++.-.+.+....-.|++++.|++|...|.
T Consensus 78 -prhy~--q~aDafVLVYs~~d~eS-f~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 78 -PRHYF--QFADAFVLVYSPMDPES-FQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR 134 (198)
T ss_pred -hHhHh--ccCceEEEEecCCCHHH-HHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence 12233 23699999965443321 12223333333333333457999999999998654
No 314
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.0004 Score=79.50 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc---CeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~---G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
++.-|.++|.---|||||+-.|-+.+.+.. ...+.|.++-.+....+ ...++|+||||-... ..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF------------t~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF------------TA 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc-cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH------------HH
Confidence 345689999999999999999988665543 34578999888888774 478999999995211 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++.. --.-.|+++||+++|.--. .+....++.++. .+.|+||.+||+|..
T Consensus 71 mRaR-Ga~vtDIaILVVa~dDGv~-pQTiEAI~hak~-----a~vP~iVAiNKiDk~ 120 (509)
T COG0532 71 MRAR-GASVTDIAILVVAADDGVM-PQTIEAINHAKA-----AGVPIVVAINKIDKP 120 (509)
T ss_pred HHhc-CCccccEEEEEEEccCCcc-hhHHHHHHHHHH-----CCCCEEEEEecccCC
Confidence 1110 0012589999988764321 233334444433 478999999999987
No 315
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.61 E-value=0.00014 Score=82.71 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh------CCCCceec--CCCCcee----------eEEEEEe---------------E
Q 004520 120 DFSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPATD----------CIREVKG---------------S 166 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLl------G~~~a~vs--~~~~tT~----------~~~~~~~---------------~ 166 (747)
..+..|+++|.+|+||||++-.|. |.....++ .+.+... .+..+.. .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999998774 22222221 1111100 0000000 0
Q ss_pred EcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEE
Q 004520 167 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 246 (747)
Q Consensus 167 ~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vII 246 (747)
..+..++||||||.... +...+.++........+|.+++|++.... ...++.... |.... ...-+
T Consensus 173 ~~~~DvVIIDTAGr~~~-------d~~lm~El~~l~~~~~pdevlLVvda~~g------q~av~~a~~-F~~~l-~i~gv 237 (437)
T PRK00771 173 FKKADVIIVDTAGRHAL-------EEDLIEEMKEIKEAVKPDEVLLVIDATIG------QQAKNQAKA-FHEAV-GIGGI 237 (437)
T ss_pred hhcCCEEEEECCCcccc-------hHHHHHHHHHHHHHhcccceeEEEecccc------HHHHHHHHH-HHhcC-CCCEE
Confidence 12347999999998643 35566666665554578888888664321 133443333 43322 23467
Q ss_pred EEeccCCCCC
Q 004520 247 VMTHSSSTLP 256 (747)
Q Consensus 247 VLTK~D~l~p 256 (747)
|+||.|....
T Consensus 238 IlTKlD~~a~ 247 (437)
T PRK00771 238 IITKLDGTAK 247 (437)
T ss_pred EEecccCCCc
Confidence 8899997643
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00059 Score=81.57 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCce--ecCC---------------CCceeeEEEEEeEEcC-eEEEEEeCCCCCC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTE--TDAF---------------QPATDCIREVKGSVNG-IKVTFIDTPGFLP 182 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~--vs~~---------------~~tT~~~~~~~~~~~G-~~v~LIDTPGl~~ 182 (747)
.--+|.|+|+..+|||||.-+|+-..-.. .+.. .+.|-........|.+ ..|+||||||--|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 34589999999999999999885221111 1111 1334455566778886 9999999999877
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 183 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld-~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.. .++.+.++. .|..++|++.. +.. .+-..+++...+. ..|.|+++||.|.+-
T Consensus 89 Ft-----------~EV~rslrv--lDgavvVvdaveGV~--~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 89 FT-----------IEVERSLRV--LDGAVVVVDAVEGVE--PQTETVWRQADKY-----GVPRILFVNKMDRLG 142 (697)
T ss_pred cH-----------HHHHHHHHh--hcceEEEEECCCCee--ecHHHHHHHHhhc-----CCCeEEEEECccccc
Confidence 63 223334432 37666665443 332 2455677777665 689999999999874
No 317
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.58 E-value=0.00029 Score=69.10 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 004520 125 ILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~ 145 (747)
++++|..|+|||||++.++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999865
No 318
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.58 E-value=0.00043 Score=74.77 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG 144 (747)
.....|+|+|++|+|||||++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 319
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.57 E-value=0.00034 Score=69.17 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee--eEEEEEeEEcCe--EEEEEeCCCCCCcccchhhhhHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIML 196 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~--~~~~~~~~~~G~--~v~LIDTPGl~~~~~~~~~~~~~il~ 196 (747)
..++|++||.+|||||||+-++.... + .+..++|- +.....+.++|. ++.++||+|-..... ...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~-f--d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt--------LTp 78 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT-F--DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT--------LTP 78 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc-c--CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc--------cCH
Confidence 45899999999999999998887532 2 23344443 444555666665 678999999643211 111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 197 SVKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 197 ~ik~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+. .++..+++|.++..... ... ...++.|.-. ...-..--++|-||+|.-
T Consensus 79 ---Syy--RgaqGiIlVYDVT~Rdt-f~kLd~W~~Eld~Y-stn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 79 ---SYY--RGAQGIILVYDVTSRDT-FVKLDIWLKELDLY-STNPDIIKMLVGNKIDKE 130 (209)
T ss_pred ---hHh--ccCceeEEEEEccchhh-HHhHHHHHHHHHhh-cCCccHhHhhhcccccch
Confidence 122 35778888876654321 111 1234444333 222233446799999954
No 320
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00084 Score=67.93 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEE--EEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~--~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
.+++.++|-+|||||.|+-..+.+....+.+ .|-.+. ....++++ .++.++||+|-.. ...+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~--------frsv~-- 72 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQES--------FRSVT-- 72 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHH--------HHHHH--
Confidence 4789999999999999999999865443322 233222 22234455 4678999999632 12222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-cccccEEEEEeccCCCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~i~k~vIIVLTK~D~l~pd 257 (747)
+.+- ..+-..|+|.+++.... --.+-.+|.+.... .-..-++++-||+|+....
T Consensus 73 -~syY--r~a~GalLVydit~r~s---F~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 73 -RSYY--RGAAGALLVYDITRRES---FNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred -HHHh--ccCcceEEEEEccchhh---HHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 2233 24567788877765321 12233444443222 1234567788999987543
No 321
>PRK10867 signal recognition particle protein; Provisional
Probab=97.54 E-value=0.00017 Score=81.77 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-------CCCCceec--CCCCcee----------eEEEEEe----------------
Q 004520 121 FSIRILVLGKTGVGKSATINSIF-------DQTKTETD--AFQPATD----------CIREVKG---------------- 165 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLl-------G~~~a~vs--~~~~tT~----------~~~~~~~---------------- 165 (747)
.+..|+++|.+|+||||++-.|. |..+..++ .+.+... .+..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 46789999999999999876663 33333332 2222110 0000110
Q ss_pred -EEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccE
Q 004520 166 -SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 244 (747)
Q Consensus 166 -~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~v 244 (747)
...+..++||||||.... ++..+.++........|+-+++|++. .+. ..-...++.+.+. . ...
T Consensus 179 a~~~~~DvVIIDTaGrl~~-------d~~lm~eL~~i~~~v~p~evllVlda--~~g-q~av~~a~~F~~~----~-~i~ 243 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHI-------DEELMDELKAIKAAVNPDEILLVVDA--MTG-QDAVNTAKAFNEA----L-GLT 243 (433)
T ss_pred HHhcCCCEEEEeCCCCccc-------CHHHHHHHHHHHHhhCCCeEEEEEec--ccH-HHHHHHHHHHHhh----C-CCC
Confidence 113467999999998643 23444555544444467888888553 221 1112233333332 2 235
Q ss_pred EEEEeccCCCC
Q 004520 245 ILVMTHSSSTL 255 (747)
Q Consensus 245 IIVLTK~D~l~ 255 (747)
-+|+||.|...
T Consensus 244 giIlTKlD~~~ 254 (433)
T PRK10867 244 GVILTKLDGDA 254 (433)
T ss_pred EEEEeCccCcc
Confidence 67889999653
No 322
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0003 Score=87.54 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHH-hCCCCce----ecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSI-FDQTKTE----TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsL-lG~~~a~----vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
=-+|||++|+||||++..- ..-.... .+-....|+.|.+.. +..-++|||.|-.-...+....+...+..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf----~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWF----TDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred ceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccc----ccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 4689999999999988543 2111111 111123378887665 445699999998766432223344444444
Q ss_pred ----HHHHhcCCCCEEEEEEeccCcc-CCCCcH-HH-------HHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 199 ----KKFIRRSPPDIVLYFERLDLIS-MGFSDF-PL-------LKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 ----k~~I~~~~~DvVL~V~~ld~~t-~~~~D~-~l-------Lk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+++=...+++.|++.+++.... .+..+. .. ++.|.+.++ +..|+.|++||.|+++
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccc
Confidence 3332334689898888765432 222222 22 333444443 5689999999999996
No 323
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.52 E-value=0.00019 Score=76.34 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=52.0
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC--CcccccEEEE
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG--TAIWFNTILV 247 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG--~~i~k~vIIV 247 (747)
.+++||||||-.+.-.- .....-+.+ .+...-|-+|+||++..+.+. -..++..+.-.+. -....|+|+|
T Consensus 116 ~~~~liDTPGQIE~FtW-SAsGsIIte----~lass~ptvv~YvvDt~rs~~---p~tFMSNMlYAcSilyktklp~ivv 187 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTW-SASGSIITE----TLASSFPTVVVYVVDTPRSTS---PTTFMSNMLYACSILYKTKLPFIVV 187 (366)
T ss_pred cCEEEEcCCCceEEEEe-cCCccchHh----hHhhcCCeEEEEEecCCcCCC---chhHHHHHHHHHHHHHhccCCeEEE
Confidence 46899999997654211 012223333 333456789999976544332 1112221111110 0125799999
Q ss_pred EeccCCCCCCCCCCCCcchhhhhhhChHHHHHHHHH
Q 004520 248 MTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQ 283 (747)
Q Consensus 248 LTK~D~l~pd~~~g~~~s~e~~i~q~~~~Lqe~I~q 283 (747)
+||+|...++ + ..+|+.. -+.+|+++.+
T Consensus 188 fNK~Dv~d~~----f---a~eWm~D-fE~FqeAl~~ 215 (366)
T KOG1532|consen 188 FNKTDVSDSE----F---ALEWMTD-FEAFQEALNE 215 (366)
T ss_pred EecccccccH----H---HHHHHHH-HHHHHHHHHh
Confidence 9999987432 1 2344432 2456666665
No 324
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00021 Score=76.39 Aligned_cols=119 Identities=17% Similarity=0.114 Sum_probs=67.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC------CceecC--CC-Cc-----e----eeEEEEE-e-------------EEcC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQT------KTETDA--FQ-PA-----T----DCIREVK-G-------------SVNG 169 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~------~a~vs~--~~-~t-----T----~~~~~~~-~-------------~~~G 169 (747)
.-+|+++|++|+||||++..|.+.- ...++. .. +. + ..+..+. . ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3589999999999999998886431 111111 10 00 0 0000000 0 1125
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
..++||||||.... +...+.++...+....++.+++|++..... +-+..+.+.|.. -...=+++|
T Consensus 155 ~D~ViIDt~Gr~~~-------~~~~l~el~~~~~~~~~~~~~LVl~a~~~~------~d~~~~~~~f~~--~~~~~~I~T 219 (270)
T PRK06731 155 VDYILIDTAGKNYR-------ASETVEEMIETMGQVEPDYICLTLSASMKS------KDMIEIITNFKD--IHIDGIVFT 219 (270)
T ss_pred CCEEEEECCCCCcC-------CHHHHHHHHHHHhhhCCCeEEEEEcCccCH------HHHHHHHHHhCC--CCCCEEEEE
Confidence 68999999998643 234455566666555778888885543221 123334444543 234567899
Q ss_pred ccCCCC
Q 004520 250 HSSSTL 255 (747)
Q Consensus 250 K~D~l~ 255 (747)
|.|...
T Consensus 220 KlDet~ 225 (270)
T PRK06731 220 KFDETA 225 (270)
T ss_pred eecCCC
Confidence 999875
No 325
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.46 E-value=0.00044 Score=67.56 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCcee--eEEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~--~~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
++.+|+|-||||||||+-.+... .+.- ++ -+|. +.......+.| .++.|+||+|- +....+...
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~-sY-itTiGvDfkirTv~i~G~~VkLqIwDtAGq--------ErFrtitst- 76 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFSG-SY-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQ--------ERFRTITST- 76 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-cccc-ce-EEEeeeeEEEEEeecCCcEEEEEEeecccH--------HHHHHHHHH-
Confidence 45789999999999999776653 2211 11 1222 22233334445 46789999994 222222222
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+- .++|++++|.+...-..-.+-...|+.++.... ..|-|+|-||.|..
T Consensus 77 --yy--rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 77 --YY--RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDP 125 (198)
T ss_pred --Hc--cCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCc
Confidence 22 478999999776533211123344444444322 56889999999975
No 326
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.45 E-value=0.00017 Score=75.72 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh--CCcccccEEEEE
Q 004520 171 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF--GTAIWFNTILVM 248 (747)
Q Consensus 171 ~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~f--G~~i~k~vIIVL 248 (747)
.+.|+||||-.+--. .......+-+.+.....-+++++++...... ....+..+.-.+ --....|.|.|+
T Consensus 92 ~y~l~DtPGQiElf~-----~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~---~~~f~s~~L~s~s~~~~~~lP~vnvl 163 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-----HSDSGRKIVERLQKNGRLVVVFLVDSSFCSD---PSKFVSSLLLSLSIMLRLELPHVNVL 163 (238)
T ss_dssp SEEEEE--SSHHHHH-----HSHHHHHHHHTSSS----EEEEEE-GGG-SS---HHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred cEEEEeCCCCEEEEE-----echhHHHHHHHHhhhcceEEEEEEecccccC---hhhHHHHHHHHHHHHhhCCCCEEEee
Confidence 789999999754311 1222233333343322346667755443321 112222211100 012357999999
Q ss_pred eccCCCC
Q 004520 249 THSSSTL 255 (747)
Q Consensus 249 TK~D~l~ 255 (747)
||+|++.
T Consensus 164 sK~Dl~~ 170 (238)
T PF03029_consen 164 SKIDLLS 170 (238)
T ss_dssp --GGGS-
T ss_pred eccCccc
Confidence 9999985
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00018 Score=80.58 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC----------CCcee--cCCCCcee-------e---E-EEEE----------eEE
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQ----------TKTET--DAFQPATD-------C---I-REVK----------GSV 167 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~----------~~a~v--s~~~~tT~-------~---~-~~~~----------~~~ 167 (747)
.+-.|+++|++||||||++..|... .+..+ +.+...+. + + .... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999888632 12111 11111110 0 0 0000 012
Q ss_pred cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCC-EEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEE
Q 004520 168 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPD-IVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 246 (747)
Q Consensus 168 ~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~D-vVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vII 246 (747)
.+..++||||||.... +...+.++.+.+....++ -+++|++.... . ..+..+...|.. -...=+
T Consensus 253 ~~~DlVLIDTaGr~~~-------~~~~l~el~~~l~~~~~~~e~~LVlsat~~-----~-~~~~~~~~~~~~--~~~~~~ 317 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK-------DFMKLAEMKELLNACGRDAEFHLAVSSTTK-----T-SDVKEIFHQFSP--FSYKTV 317 (388)
T ss_pred CCCCEEEEcCCCCCcc-------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-----H-HHHHHHHHHhcC--CCCCEE
Confidence 4568999999998643 222355566666544433 56777544322 1 122233333321 125567
Q ss_pred EEeccCCCCC
Q 004520 247 VMTHSSSTLP 256 (747)
Q Consensus 247 VLTK~D~l~p 256 (747)
++||.|....
T Consensus 318 I~TKlDet~~ 327 (388)
T PRK12723 318 IFTKLDETTC 327 (388)
T ss_pred EEEeccCCCc
Confidence 8999998753
No 328
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.43 E-value=0.001 Score=75.95 Aligned_cols=127 Identities=15% Similarity=0.248 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCC-----------------------------------------------
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP----------------------------------------------- 155 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~----------------------------------------------- 155 (747)
.||+|||--.+||+|.+-.|.....+.-++..-
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr 388 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMR 388 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 489999999999999999996544433322222
Q ss_pred ------ceeeEEEEEeEEcC---eEEEEEeCCCCCCcccch--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCC
Q 004520 156 ------ATDCIREVKGSVNG---IKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFS 224 (747)
Q Consensus 156 ------tT~~~~~~~~~~~G---~~v~LIDTPGl~~~~~~~--~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~ 224 (747)
+|.....+..++.| .+.+++|.||+..+-..+ ....+.+...-+.++ ..|++|++|+.-.... .
T Consensus 389 ~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQDGSVD---A 463 (980)
T KOG0447|consen 389 KNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQDGSVD---A 463 (980)
T ss_pred hcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEeccCCcc---h
Confidence 22333333445554 368999999998764433 122344555555566 4789999997433221 2
Q ss_pred cHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 225 DFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 225 D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++..+.-+...+. ..++.+|+|+||.|++.
T Consensus 464 ERSnVTDLVsq~D-P~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 464 ERSIVTDLVSQMD-PHGRRTIFVLTKVDLAE 493 (980)
T ss_pred hhhhHHHHHHhcC-CCCCeeEEEEeecchhh
Confidence 3334444444333 33789999999999874
No 329
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00014 Score=82.36 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=63.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--------Cceec--CCCCce----e--------eEEEEE---------eEEcCe
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQT--------KTETD--AFQPAT----D--------CIREVK---------GSVNGI 170 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~--------~a~vs--~~~~tT----~--------~~~~~~---------~~~~G~ 170 (747)
.-.|+++|++||||||++..|...- +..++ .+.... + .+.... ....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 3479999999999999998875421 11111 110000 0 000000 012356
Q ss_pred EEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 171 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 171 ~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~-~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
.++||||||.... +......+..++.. ..+.-+++|++... ....+..+.+.|..- ...-+|+|
T Consensus 301 DlVlIDt~G~~~~-------d~~~~~~L~~ll~~~~~~~~~~LVl~a~~------~~~~l~~~~~~f~~~--~~~~vI~T 365 (424)
T PRK05703 301 DVILIDTAGRSQR-------DKRLIEELKALIEFSGEPIDVYLVLSATT------KYEDLKDIYKHFSRL--PLDGLIFT 365 (424)
T ss_pred CEEEEeCCCCCCC-------CHHHHHHHHHHHhccCCCCeEEEEEECCC------CHHHHHHHHHHhCCC--CCCEEEEe
Confidence 8999999998543 23334455555542 23445556644332 123455555555421 23357899
Q ss_pred ccCCCC
Q 004520 250 HSSSTL 255 (747)
Q Consensus 250 K~D~l~ 255 (747)
|+|...
T Consensus 366 KlDet~ 371 (424)
T PRK05703 366 KLDETS 371 (424)
T ss_pred cccccc
Confidence 999864
No 330
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.00031 Score=78.91 Aligned_cols=193 Identities=15% Similarity=0.195 Sum_probs=106.5
Q ss_pred CCCCCchHhhhchHhhcccccEEEEEEeccCCCCCCCHHHHHHHHhcc---ccccc-cccchhHHHHhhcchhHHHHHhh
Q 004520 35 PHNQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH---LATLI-RAGESDMKMVNLRSDRTRAIARE 110 (747)
Q Consensus 35 ~~~~~~~~eek~~~~kle~~dVillvLDaR~gls~~d~~vaqvL~rl~---lad~~-~~~~~~~~~~~lg~~~~~~iA~~ 110 (747)
.++.++.+..+++..+|-+|||-+-++ ..+..+.. +-+.. ..-.....+...-+++...+-..
T Consensus 22 i~E~~i~e~~reir~ALLeADVnl~vV-------------k~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~ 88 (451)
T COG0541 22 ITEKDVKEALREIRRALLEADVNLKVV-------------KDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGG 88 (451)
T ss_pred CCHHHHHHHHHHHHHHHHhccccHHHH-------------HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 345667778888889999999876443 23333221 11111 11122234445445555544433
Q ss_pred cccCCC-CCCCCCeEEEEEcCCCCcHHHHHHHHh------CCCCceec--CCCCce---------------------eeE
Q 004520 111 QEATGI-PDLDFSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPAT---------------------DCI 160 (747)
Q Consensus 111 ~~~~~~-~~~~~~lrIlVVGk~GvGKSSLINsLl------G~~~a~vs--~~~~tT---------------------~~~ 160 (747)
+.... -....+..|+++|--|+||||+.-.|. |.+...++ .+.|.- .++
T Consensus 89 -~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P 167 (451)
T COG0541 89 -ENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP 167 (451)
T ss_pred -CCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH
Confidence 11111 123457899999999999999997774 33333332 121110 001
Q ss_pred EEEE------eEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHH
Q 004520 161 REVK------GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTE 234 (747)
Q Consensus 161 ~~~~------~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e 234 (747)
..+. ....+..++||||+|-..- ++..+.+++..-....||-+|+|++. -+- ..-.+..+.+.+
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~i-------de~Lm~El~~Ik~~~~P~E~llVvDa--m~G-QdA~~~A~aF~e 237 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHI-------DEELMDELKEIKEVINPDETLLVVDA--MIG-QDAVNTAKAFNE 237 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccc-------cHHHHHHHHHHHhhcCCCeEEEEEec--ccc-hHHHHHHHHHhh
Confidence 1000 1113458999999998632 46677777765555689999999543 221 012344444544
Q ss_pred HhCCcccccEEEEEeccCCCCC
Q 004520 235 VFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 235 ~fG~~i~k~vIIVLTK~D~l~p 256 (747)
.. . -+=||+||.|--..
T Consensus 238 ~l----~-itGvIlTKlDGdaR 254 (451)
T COG0541 238 AL----G-ITGVILTKLDGDAR 254 (451)
T ss_pred hc----C-CceEEEEcccCCCc
Confidence 43 2 34568899997643
No 331
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.42 E-value=0.00034 Score=79.38 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-------CCCCceec--CCCCcee------------eEEEEE---------------
Q 004520 121 FSIRILVLGKTGVGKSATINSIF-------DQTKTETD--AFQPATD------------CIREVK--------------- 164 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLl-------G~~~a~vs--~~~~tT~------------~~~~~~--------------- 164 (747)
.+..|+++|.+|+||||++-.|. |..+..++ .+.+... .+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 46789999999999999975553 22222221 1221100 001000
Q ss_pred eEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccE
Q 004520 165 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 244 (747)
Q Consensus 165 ~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~v 244 (747)
....+..++||||||.... +...+.++..+.....++-+++|++.. +. ..-....+.+.+. + ...
T Consensus 178 ~~~~~~DvVIIDTaGr~~~-------d~~l~~eL~~i~~~~~p~e~lLVvda~--tg-q~~~~~a~~f~~~----v-~i~ 242 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQI-------DEELMEELAAIKEILNPDEILLVVDAM--TG-QDAVNTAKTFNER----L-GLT 242 (428)
T ss_pred HHhcCCCEEEEeCCCcccc-------CHHHHHHHHHHHHhhCCceEEEEEecc--ch-HHHHHHHHHHHhh----C-CCC
Confidence 0013457999999998643 234455555544444688888886543 21 1122233333322 2 245
Q ss_pred EEEEeccCCCC
Q 004520 245 ILVMTHSSSTL 255 (747)
Q Consensus 245 IIVLTK~D~l~ 255 (747)
-+|+||.|...
T Consensus 243 giIlTKlD~~~ 253 (428)
T TIGR00959 243 GVVLTKLDGDA 253 (428)
T ss_pred EEEEeCccCcc
Confidence 66799999653
No 332
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0016 Score=63.63 Aligned_cols=120 Identities=22% Similarity=0.155 Sum_probs=73.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceee--EEEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHH
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKI 194 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~--~~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~i 194 (747)
-.+-++|++||..||||+-|+..++.. .+.- ..+.|-. ..-...+++| .++.++||+|-. ....+
T Consensus 4 ykflfkivlvgnagvgktclvrrftqg-lfpp--gqgatigvdfmiktvev~gekiklqiwdtagqe--------rfrsi 72 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQG-LFPP--GQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE--------RFRSI 72 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhcc-CCCC--CCCceeeeeEEEEEEEECCeEEEEEEeeccchH--------HHHHH
Confidence 345689999999999999999887642 2221 1223332 2222334444 467899999952 22223
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 195 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 195 l~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
..+ +- ..+|.+++|.++.....-..--..++.|.+.- +-..-.|+|-||.|+...
T Consensus 73 tqs---yy--rsahalilvydiscqpsfdclpewlreie~ya--n~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 73 TQS---YY--RSAHALILVYDISCQPSFDCLPEWLREIEQYA--NNKVLKILVGNKIDLADR 127 (213)
T ss_pred HHH---Hh--hhcceEEEEEecccCcchhhhHHHHHHHHHHh--hcceEEEeeccccchhhh
Confidence 222 22 24699999988875432112235666666652 223456889999998743
No 333
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.00055 Score=77.37 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-------Cceec-C-CCCcee----------eEEEEEe----------EEcCeEE
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQT-------KTETD-A-FQPATD----------CIREVKG----------SVNGIKV 172 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~-------~a~vs-~-~~~tT~----------~~~~~~~----------~~~G~~v 172 (747)
...|+++|++||||||++..|.... +..++ + +..... .+..... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999886421 11111 1 111000 0000000 1136688
Q ss_pred EEEeCCCCCCcccchhhhhHHHHHHHHHHHhcC---CCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 173 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS---PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 173 ~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~---~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
+||||||+.... ...+.++.+++... .++-+++|++..... ..+..+.+.|. . -...=+|+|
T Consensus 303 VLIDTaGr~~rd-------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~------~~~~~~~~~f~-~-~~~~glIlT 367 (432)
T PRK12724 303 ILIDTAGYSHRN-------LEQLERMQSFYSCFGEKDSVENLLVLSSTSSY------HHTLTVLKAYE-S-LNYRRILLT 367 (432)
T ss_pred EEEeCCCCCccC-------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH------HHHHHHHHHhc-C-CCCCEEEEE
Confidence 999999986442 22334444444322 244566775443221 23444445542 1 235567899
Q ss_pred ccCCCCC
Q 004520 250 HSSSTLP 256 (747)
Q Consensus 250 K~D~l~p 256 (747)
|.|....
T Consensus 368 KLDEt~~ 374 (432)
T PRK12724 368 KLDEADF 374 (432)
T ss_pred cccCCCC
Confidence 9998743
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.31 E-value=0.0029 Score=62.21 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=42.2
Q ss_pred CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEE
Q 004520 169 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 248 (747)
Q Consensus 169 G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVL 248 (747)
+..++||||||.... ....+..+..+.....++.+++|++.. +. ......+..+.+..+ ..-+|+
T Consensus 82 ~~d~viiDt~g~~~~-------~~~~l~~l~~l~~~~~~~~~~lVv~~~--~~-~~~~~~~~~~~~~~~-----~~~vil 146 (173)
T cd03115 82 NFDVVIVDTAGRLQI-------DENLMEELKKIKRVVKPDEVLLVVDAM--TG-QDAVNQAKAFNEALG-----ITGVIL 146 (173)
T ss_pred CCCEEEEECcccchh-------hHHHHHHHHHHHhhcCCCeEEEEEECC--CC-hHHHHHHHHHHhhCC-----CCEEEE
Confidence 567899999998532 233444444443333578888997653 21 122233333333322 366788
Q ss_pred eccCCCCC
Q 004520 249 THSSSTLP 256 (747)
Q Consensus 249 TK~D~l~p 256 (747)
||.|....
T Consensus 147 tk~D~~~~ 154 (173)
T cd03115 147 TKLDGDAR 154 (173)
T ss_pred ECCcCCCC
Confidence 99998754
No 335
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0021 Score=74.32 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---C------------------CCCce---------ecCCCCceeeEEEEEeEEcCe
Q 004520 121 FSIRILVLGKTGVGKSATINSIF---D------------------QTKTE---------TDAFQPATDCIREVKGSVNGI 170 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLl---G------------------~~~a~---------vs~~~~tT~~~~~~~~~~~G~ 170 (747)
..++++++|...+|||||+-.|+ | ..-+. .-...+.|.++....++-.-.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 56899999999999999998884 2 11111 012235677777767776778
Q ss_pred EEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC--ccCCC----CcHHHHHHHHHHhCCcccccE
Q 004520 171 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL--ISMGF----SDFPLLKLMTEVFGTAIWFNT 244 (747)
Q Consensus 171 ~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~--~t~~~----~D~~lLk~L~e~fG~~i~k~v 244 (747)
.++|+|+||..+.- . ..+... ..+|+.++|++... +..+. +-.+.+ .+.+.+| -...
T Consensus 256 ~~tliDaPGhkdFi-~---------nmi~g~---sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lg---i~ql 318 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFI-P---------NMISGA---SQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLG---ISQL 318 (603)
T ss_pred eEEEecCCCccccc-h---------hhhccc---cccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcC---cceE
Confidence 99999999965541 1 222221 36788888765542 22211 122333 3445556 4589
Q ss_pred EEEEeccCCCC
Q 004520 245 ILVMTHSSSTL 255 (747)
Q Consensus 245 IIVLTK~D~l~ 255 (747)
||++||+|.+.
T Consensus 319 ivaiNKmD~V~ 329 (603)
T KOG0458|consen 319 IVAINKMDLVS 329 (603)
T ss_pred EEEeecccccC
Confidence 99999999884
No 336
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.27 E-value=0.0003 Score=80.86 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 004520 122 SIRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG 144 (747)
.-.|++||++||||||++..|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999975
No 337
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.24 E-value=0.00078 Score=65.83 Aligned_cols=114 Identities=10% Similarity=0.021 Sum_probs=73.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.+.+.++|--++||||++|.++...-. ..-..|........+.+...+.++|.||-... ...++...
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rf--------rsmWeryc-- 86 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYC-- 86 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccH--------HHHHHHHh--
Confidence 467999999999999999998752211 12234666666666667889999999997432 33344332
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcc--cccEEEEEeccCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI--WFNTILVMTHSSST 254 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i--~k~vIIVLTK~D~l 254 (747)
.+.++++||++......-...+ ..+...+-+.. +.|++|+-||.|..
T Consensus 87 ---R~v~aivY~VDaad~~k~~~sr---~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 87 ---RGVSAIVYVVDAADPDKLEASR---SELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred ---hcCcEEEEEeecCCcccchhhH---HHHHHHhcchhhcCCcEEEecccccCc
Confidence 2579999997654322111112 22333332222 57999999999975
No 338
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0023 Score=66.07 Aligned_cols=115 Identities=10% Similarity=0.195 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceee--EEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~--~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
-.|+++|.+++|||+|+=.|.-.. ..++-+. ........+...+.+||-||-.. ...+..+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs------~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-------lR~kl~e---- 101 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS------HRGTVTSIEPNEATYRLGSENVTLVDLPGHSR-------LRRKLLE---- 101 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC------ccCeeeeeccceeeEeecCcceEEEeCCCcHH-------HHHHHHH----
Confidence 359999999999999987776432 2222222 22333344555689999999632 1222222
Q ss_pred HHh-cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh----CCcccccEEEEEeccCCCCC
Q 004520 201 FIR-RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF----GTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 201 ~I~-~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~f----G~~i~k~vIIVLTK~D~l~p 256 (747)
+++ ...+-.|+||++...+.. .-..+.+.+-.++ +..-..|+.|.+||-|+...
T Consensus 102 ~~~~~~~akaiVFVVDSa~f~k--~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFVVDSATFLK--NVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HccccccceeEEEEEeccccch--hhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 222 225668888865544432 2333444444433 33346799999999999854
No 339
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.00074 Score=76.33 Aligned_cols=126 Identities=25% Similarity=0.335 Sum_probs=77.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCCcee-----cCCCCc------e--eeEE-----EEE-------------
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIF---DQTKTET-----DAFQPA------T--DCIR-----EVK------------- 164 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLl---G~~~a~v-----s~~~~t------T--~~~~-----~~~------------- 164 (747)
...+..|.+||-.||||||-+-.|. -++.+.| ..+.++ | ++.. .+.
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 3478899999999999999998882 2333332 111111 0 0000 000
Q ss_pred -------eEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC
Q 004520 165 -------GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 237 (747)
Q Consensus 165 -------~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG 237 (747)
....|..|+||||+|-... +...+..+.++++..+||.|||| ..+.-- .....-++.+.+.++
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~-------~~~lm~~l~k~~~~~~pd~i~~v--gealvg-~dsv~q~~~fn~al~ 524 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHN-------NAPLMTSLAKLIKVNKPDLILFV--GEALVG-NDSVDQLKKFNRALA 524 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccC-------ChhHHHHHHHHHhcCCCceEEEe--hhhhhC-cHHHHHHHHHHHHHh
Confidence 1235678999999998643 46678889999998899999999 333221 122334555555554
Q ss_pred Ccccc--cEEEEEeccCCC
Q 004520 238 TAIWF--NTILVMTHSSST 254 (747)
Q Consensus 238 ~~i~k--~vIIVLTK~D~l 254 (747)
..... -=-|++||+|.+
T Consensus 525 ~~~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 525 DHSTPRLIDGILLTKFDTV 543 (587)
T ss_pred cCCCccccceEEEEeccch
Confidence 32211 123689999976
No 340
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.12 E-value=0.0023 Score=72.35 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc-----e-------ecCC---CCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKT-----E-------TDAF---QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 188 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a-----~-------vs~~---~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~ 188 (747)
+|+||...--||+||+..|+.+.-. . ..+. .+.|--.......|+|..|.++||||--+.+..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE-- 84 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE-- 84 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch--
Confidence 7999999999999999999853211 1 1111 123333344456788999999999998876432
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 189 KRNRKIMLSVKKFIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 189 ~~~~~il~~ik~~I~~~~~DvVL~V~~l-d~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.+.++. -+|.||++++. ++.-. +-+-+++...+. +-+-|+|+||.|..
T Consensus 85 --VERvl~---------MVDgvlLlVDA~EGpMP--QTrFVlkKAl~~-----gL~PIVVvNKiDrp 133 (603)
T COG1217 85 --VERVLS---------MVDGVLLLVDASEGPMP--QTRFVLKKALAL-----GLKPIVVINKIDRP 133 (603)
T ss_pred --hhhhhh---------hcceEEEEEEcccCCCC--chhhhHHHHHHc-----CCCcEEEEeCCCCC
Confidence 233322 24766666543 43322 344555554443 46778899999975
No 341
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.99 E-value=0.00027 Score=74.98 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 004520 121 FSIRILVLGKTGVGKSATINSIF 143 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLl 143 (747)
...+|.|-|+||+|||||++.|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHH
Confidence 46899999999999999999994
No 342
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.97 E-value=0.006 Score=75.91 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=63.2
Q ss_pred cHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC------------------eEEEEEeCCCCCCcccchhhhhHHHH
Q 004520 134 GKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG------------------IKVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 134 GKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G------------------~~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
+||||+-+|-+.+++. +...+.|.++-.+.+.... ..+.|+||||.... ...
T Consensus 473 ~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l- 542 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL- 542 (1049)
T ss_pred ccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH-
Confidence 3999999999877644 3345667766555444321 13899999995221 011
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.... ...+|++++|++.+.. ........+..+... ..|+|+|+||+|+.+
T Consensus 543 --r~~g--~~~aDivlLVVDa~~G-i~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 --RKRG--GSLADLAVLVVDINEG-FKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred --HHhh--cccCCEEEEEEECccc-CCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 1111 1357999999876532 112344555554442 579999999999874
No 343
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.89 E-value=0.00081 Score=71.12 Aligned_cols=120 Identities=16% Similarity=0.239 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 203 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~ 203 (747)
++.++|-|.+||||+++.|+|.. ..+.++..+|-........+.|-++.+.|.||+.+....+......+....+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar---- 135 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR---- 135 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEee----
Confidence 89999999999999999999853 4555566777666666666789999999999999875443223332222111
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcc-cccEEEEEeccCC
Q 004520 204 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI-WFNTILVMTHSSS 253 (747)
Q Consensus 204 ~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i-~k~vIIVLTK~D~ 253 (747)
..+++++|.+. ... .....+++.-.+-||... ..|--+.+.|-|.
T Consensus 136 --tcnli~~vld~--~kp-~~hk~~ie~eleg~girlnk~pp~i~~kkKdk 181 (358)
T KOG1487|consen 136 --TCNLIFIVLDV--LKP-LSHKKIIEKELEGFGIRLNKQPPNIGTKKKDK 181 (358)
T ss_pred --cccEEEEEeec--cCc-ccHHHHHHHhhhcceeeccCCCCCcccccccc
Confidence 24677777433 221 245677777777777544 2344445555553
No 344
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0039 Score=67.42 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHh
Q 004520 118 DLDFSIRILVLGKTGVGKSATINSIF 143 (747)
Q Consensus 118 ~~~~~lrIlVVGk~GvGKSSLINsLl 143 (747)
......+|.|-|.||+||||||-.|.
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHH
Confidence 44566799999999999999999984
No 345
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.014 Score=64.01 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCce-ec-CCCCceeeEEE----EEeEE---------cCeEEEEEeCCCCCCccc
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTE-TD-AFQPATDCIRE----VKGSV---------NGIKVTFIDTPGFLPSCV 185 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~-vs-~~~~tT~~~~~----~~~~~---------~G~~v~LIDTPGl~~~~~ 185 (747)
..++|.++|...+||+||..+|..-.... .+ ...++++.... ..+.+ ...++.+||+||--
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----
Confidence 34899999999999999999995321111 11 11122222111 11111 22477999999962
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC--ccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 186 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL--ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 186 ~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~--~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
...+.+..-. .-+|+.++|++... .+...+- -+ |.+. .-+..|||+||.|.++.
T Consensus 82 -------sLIRtiigga--qiiDlm~lviDv~kG~QtQtAEc-Li---ig~~----~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 -------SLIRTIIGGA--QIIDLMILVIDVQKGKQTQTAEC-LI---IGEL----LCKKLVVVINKIDVLPE 137 (522)
T ss_pred -------HHHHHHHhhh--heeeeeeEEEehhcccccccchh-hh---hhhh----hccceEEEEeccccccc
Confidence 1222222111 13688888876543 2221111 11 2222 24679999999999954
No 346
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0063 Score=59.63 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=63.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcee--cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 199 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik 199 (747)
-++|+|+|.+.|||+|++-+-++...... +.+ +.--.+..+...-.-.++.++||+|... ..++.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-GidFKvKTvyr~~kRiklQiwDTagqEr------------yrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRSDKRIKLQIWDTAGQER------------YRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeee-eeeEEEeEeeecccEEEEEEEecccchh------------hhHHH
Confidence 35999999999999999999887542221 100 1001111111111235789999999732 12221
Q ss_pred -HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-cccccEEEEEeccCCC
Q 004520 200 -KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 254 (747)
Q Consensus 200 -~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~i~k~vIIVLTK~D~l 254 (747)
.+. .+++.++++.++..... -..+-.++..+-.- .-..++|+|.||||+-
T Consensus 88 Tayy--RgamgfiLmyDitNeeS---f~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 88 TAYY--RGAMGFILMYDITNEES---FNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred HHHh--hccceEEEEEecCCHHH---HHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 122 46789999866543211 11122222222111 1246899999999975
No 347
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0099 Score=68.36 Aligned_cols=113 Identities=23% Similarity=0.362 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCc-eecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHH
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKT-ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a-~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
++.+.++-++|+|+||+||||||.+|..+-.- ..+.+.+..+ .+.+ .-++++|..+|.= .. .+.
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT---vvsg--K~RRiTflEcp~D----l~------~mi 128 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT---VVSG--KTRRITFLECPSD----LH------QMI 128 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE---Eeec--ceeEEEEEeChHH----HH------HHH
Confidence 35567888999999999999999999854211 1122222111 1111 2467899998831 11 111
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.+.+ -+|+||+.++.. +........+|..+... | ...++-|+||.|+..
T Consensus 129 -DvaK-----IaDLVlLlIdgn-fGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlfk 177 (1077)
T COG5192 129 -DVAK-----IADLVLLLIDGN-FGFEMETMEFLNILISH-G---MPRVLGVVTHLDLFK 177 (1077)
T ss_pred -hHHH-----hhheeEEEeccc-cCceehHHHHHHHHhhc-C---CCceEEEEeeccccc
Confidence 1221 248998886543 22211333444444433 2 456777999999984
No 348
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.0023 Score=70.00 Aligned_cols=123 Identities=25% Similarity=0.328 Sum_probs=67.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC------CCCceec--CCCCc------------eeeEEEEE--------------
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFD------QTKTETD--AFQPA------------TDCIREVK-------------- 164 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG------~~~a~vs--~~~~t------------T~~~~~~~-------------- 164 (747)
...+..|++||-.|+||||+|-.|.. ..+.... .|... -..+....
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 34578999999999999999988842 2111110 00000 00111110
Q ss_pred -eEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcC------CCCEEEEEEeccCccCCCCcHHHHHHHHHHhC
Q 004520 165 -GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS------PPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 237 (747)
Q Consensus 165 -~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~------~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG 237 (747)
..-.|..++||||+|-..++ ...+.++++..+.. .||-+++|++ +.+- .+-..-.+.+.+..+
T Consensus 216 ~Akar~~DvvliDTAGRLhnk-------~nLM~EL~KI~rV~~k~~~~ap~e~llvlD--AttG-qnal~QAk~F~eav~ 285 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNK-------KNLMDELKKIVRVIKKDDPDAPHEILLVLD--ATTG-QNALSQAKIFNEAVG 285 (340)
T ss_pred HHHHcCCCEEEEeCcccccCc-------hhHHHHHHHHHHHhccccCCCCceEEEEEE--cccC-hhHHHHHHHHHHhcC
Confidence 01135789999999998663 33444444443322 3566888833 3321 122334444555432
Q ss_pred CcccccEEEEEeccCCCCC
Q 004520 238 TAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 238 ~~i~k~vIIVLTK~D~l~p 256 (747)
-.-+|+||.|-...
T Consensus 286 -----l~GiIlTKlDgtAK 299 (340)
T COG0552 286 -----LDGIILTKLDGTAK 299 (340)
T ss_pred -----CceEEEEecccCCC
Confidence 34568999996543
No 349
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.75 E-value=0.0062 Score=55.93 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=57.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhc
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 204 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~ 204 (747)
|++.|+||+|||+++..+...- +..+.-+|.+-+...... .....+...+.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~~--~~~~~i~~~~~~-~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYAG--DSEQKIRDFFKK-AKK 55 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSSTT--HHHHHHHHHHHH-HHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------------------cccccccccccccccccc--cccccccccccc-ccc
Confidence 6899999999999999998642 233555666655422111 222333333333 222
Q ss_pred CCCCEEEEEEeccCccCCC------CcHHHHHHHHHHhCCccc--ccEEEEEeccC
Q 004520 205 SPPDIVLYFERLDLISMGF------SDFPLLKLMTEVFGTAIW--FNTILVMTHSS 252 (747)
Q Consensus 205 ~~~DvVL~V~~ld~~t~~~------~D~~lLk~L~e~fG~~i~--k~vIIVLTK~D 252 (747)
....+||+++.++...... ....++..+...+..... .++++|+|--+
T Consensus 56 ~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 56 SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 2225889998887654321 124456666665543222 34666665544
No 350
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.75 E-value=0.0051 Score=59.95 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 004520 125 ILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG 144 (747)
|.++|++|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998853
No 351
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0069 Score=69.76 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCce--------------ecCCCCceeeEEEEEeEEcC---eEEEEEeCCCCCCccc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTE--------------TDAFQPATDCIREVKGSVNG---IKVTFIDTPGFLPSCV 185 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~--------------vs~~~~tT~~~~~~~~~~~G---~~v~LIDTPGl~~~~~ 185 (747)
=|++||-.---|||||...|+....+. +..-.+.|-..+...+.+.+ .-+.+|||||--|.+.
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 379999999999999999996422211 11233567776666666655 7899999999877643
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 186 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 186 ~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+ +.+.+.. .+.+|+|++...-- ..+++..+...|. .+-.+|.|+||+|+..
T Consensus 141 E-----------VsRslaa--c~G~lLvVDA~qGv----qAQT~anf~lAfe--~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 141 E-----------VSRSLAA--CDGALLVVDASQGV----QAQTVANFYLAFE--AGLAIIPVLNKIDLPS 191 (650)
T ss_pred e-----------ehehhhh--cCceEEEEEcCcCc----hHHHHHHHHHHHH--cCCeEEEeeeccCCCC
Confidence 2 2233322 37777775544221 2234444444432 3467999999999864
No 352
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.008 Score=66.85 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHh------CCCCcee--cCCCC---------ceeeEEEEE---------------
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIF------DQTKTET--DAFQP---------ATDCIREVK--------------- 164 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLl------G~~~a~v--s~~~~---------tT~~~~~~~--------------- 164 (747)
+....+-.|++||--|+||+|++-.+. |...+.+ +.+.. .|+.-..+.
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 444556689999999999999998884 2222222 11111 122111111
Q ss_pred ---eEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCccc
Q 004520 165 ---GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 241 (747)
Q Consensus 165 ---~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~ 241 (747)
+..++..++|+||.|-... ....+.+++.+.+...||-||||++.. .- +......+.|...+.
T Consensus 176 v~~fKke~fdvIIvDTSGRh~q-------e~sLfeEM~~v~~ai~Pd~vi~VmDas--iG-----Qaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQ-------EASLFEEMKQVSKAIKPDEIIFVMDAS--IG-----QAAEAQARAFKETVD 241 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhh-------hHHHHHHHHHHHhhcCCCeEEEEEecc--cc-----HhHHHHHHHHHHhhc
Confidence 1224568999999998633 455666666555555899999995443 21 123333344433333
Q ss_pred ccEEEEEeccCCCCCC
Q 004520 242 FNTILVMTHSSSTLPE 257 (747)
Q Consensus 242 k~vIIVLTK~D~l~pd 257 (747)
. .-+++||.|--...
T Consensus 242 v-g~vIlTKlDGhakG 256 (483)
T KOG0780|consen 242 V-GAVILTKLDGHAKG 256 (483)
T ss_pred c-ceEEEEecccCCCC
Confidence 3 34578999976543
No 353
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.022 Score=64.39 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcee--cCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.|+..|.---|||||+.++.|.....- ....++|.+...+........+.|||.||..+. +...+. -
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~----------i~~mia-g 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF----------ISNLLA-G 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH----------HHHHHh-h
Confidence 477889999999999999998643332 334678888888887777789999999998422 222222 1
Q ss_pred HhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 202 IRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld-~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
+ +.+|..++|++.+ +... +..+.+. +.+.|| .++.|||+||+|...+
T Consensus 71 ~--~~~d~alLvV~~deGl~~--qtgEhL~-iLdllg---i~~giivltk~D~~d~ 118 (447)
T COG3276 71 L--GGIDYALLVVAADEGLMA--QTGEHLL-ILDLLG---IKNGIIVLTKADRVDE 118 (447)
T ss_pred h--cCCceEEEEEeCccCcch--hhHHHHH-HHHhcC---CCceEEEEeccccccH
Confidence 2 4679999998774 3332 2333332 234566 4578999999999854
No 354
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.30 E-value=0.012 Score=57.42 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=71.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC-eEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
...+||+++|--|+||+|++..|.+++...+.+..+...... ...| ..+.++|.-|-..- .-++.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v----~~~g~f~LnvwDiGGqr~I--------RpyWs-- 80 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKV----EYDGTFHLNVWDIGGQRGI--------RPYWS-- 80 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEE----eecCcEEEEEEecCCcccc--------chhhh--
Confidence 567999999999999999999999998777655444433333 3344 78999999885321 11222
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC--cccccEEEEEeccCCCC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~--~i~k~vIIVLTK~D~l~ 255 (747)
.+. ...|.++||++....+. .+ ++-+.+.+.... -...|+.|-.||-|++.
T Consensus 81 -NYy--envd~lIyVIDS~D~kr--fe-E~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 81 -NYY--ENVDGLIYVIDSTDEKR--FE-EISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred -hhh--hccceEEEEEeCCchHh--HH-HHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 222 25799999976322111 11 222222232211 12457777777777764
No 355
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.0087 Score=59.77 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=67.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.-+++++|--|+||+||++.|-.......-+ |..+..-...+.|.+++.+|--|-.. ....-+.|
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~q-----------Arr~wkdy 84 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHLQ-----------ARRVWKDY 84 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHHH-----------HHHHHHHH
Confidence 4579999999999999999997755443322 33333334466789999999877521 12233445
Q ss_pred HhcCCCCEEEEEEec-cCccC--CCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 202 IRRSPPDIVLYFERL-DLISM--GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 202 I~~~~~DvVL~V~~l-d~~t~--~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
+. .+|.++|.++. |..+. ...+.+.+-.+... .+.|++|+.||+|...
T Consensus 85 f~--~v~~iv~lvda~d~er~~es~~eld~ll~~e~l----a~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 85 FP--QVDAIVYLVDAYDQERFAESKKELDALLSDESL----ATVPFLILGNKIDIPY 135 (193)
T ss_pred Hh--hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHH----hcCcceeecccccCCC
Confidence 43 35777776543 32221 01111222122211 4789999999999753
No 356
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.013 Score=59.21 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~ 200 (747)
...+|+++|--|+||||+++.|--.+...+.+ |-....-...+.+..+.++|.-|-..- ...++ .
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vttvP----TiGfnVE~v~ykn~~f~vWDvGGq~k~--------R~lW~---~ 80 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TIGFNVETVEYKNISFTVWDVGGQEKL--------RPLWK---H 80 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccCCC----ccccceeEEEEcceEEEEEecCCCccc--------ccchh---h
Confidence 46899999999999999999996555444422 333333333446899999999886322 11222 2
Q ss_pred HHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhCCc--ccccEEEEEeccCCC
Q 004520 201 FIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 254 (747)
Q Consensus 201 ~I~~~~~DvVL~V~~ld-~~t~~~~D~~lLk~L~e~fG~~--i~k~vIIVLTK~D~l 254 (747)
+. ...+.++||++.. +.+. ...-+.+.+.+... ...|+++..||-|..
T Consensus 81 Y~--~~t~~lIfVvDS~Dr~Ri----~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 81 YF--QNTQGLIFVVDSSDRERI----EEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred hc--cCCcEEEEEEeCCcHHHH----HHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 32 2458888886543 2221 12333444444322 367899999999975
No 357
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.039 Score=54.52 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeE--EEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCI--REVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIML 196 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~--~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~ 196 (747)
.-++++|+|+.|+|||-|+..++... +.-. .+.|-.+ -.....++| .++.++||+|-. +...
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~k-fkDd--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQE-----------rFRS 73 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENK-FKDD--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE-----------RFRS 73 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhh-hccc--ccceeeeeecceeeeecCcEEEEEEeecccHH-----------HHHH
Confidence 34789999999999999998887532 2211 1122211 111123334 477899999952 1122
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhC-CcccccEEEEEeccCCCC
Q 004520 197 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 197 ~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG-~~i~k~vIIVLTK~D~l~ 255 (747)
..+.+- .++-..|+|.++.... .-..+-.++.+... ..-..-+|++-||.|+-+
T Consensus 74 VtRsYY--RGAAGAlLVYD~Tsrd---sfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 74 VTRSYY--RGAAGALLVYDITSRD---SFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred HHHHHh--ccccceEEEEeccchh---hHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 222333 2556667775554321 12234445554422 111233445567877653
No 358
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.08 E-value=0.012 Score=61.78 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcC-eEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
-+|+++|++|+||||+=-.++....+.-....+.|-++......+-| .-+.++|.-|-... -+..+..-+..
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f-------men~~~~q~d~ 77 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF-------MENYLSSQEDN 77 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH-------HHHHHhhcchh
Confidence 47999999999999988877754333323345667777665554444 67788998774211 11111100111
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHH-HhCCcccccEEEEEeccCCCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTE-VFGTAIWFNTILVMTHSSSTLPE 257 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e-~fG~~i~k~vIIVLTK~D~l~pd 257 (747)
+ -+..++++||.++..... ..|....+.-.+ .+..+-...+.+.++|.|+.+.+
T Consensus 78 i-F~nV~vli~vFDves~e~-~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 78 I-FRNVQVLIYVFDVESREM-EKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred h-heeheeeeeeeeccchhh-hhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 0 135789999976654322 124333333222 22223345677889999998654
No 359
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.03 E-value=0.0036 Score=61.66 Aligned_cols=55 Identities=25% Similarity=0.487 Sum_probs=36.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
.|+|+|++|+||||+++.|.+..........-+|+.... ....|..+.++++..+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~--g~~~~~~~~~~~~~~~ 57 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRP--GEVDGVDYFFVSKEEF 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCC--CCcCCcEEEEecHHHH
Confidence 489999999999999999998643333233334443332 2345667777766554
No 360
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=95.93 E-value=0.025 Score=56.44 Aligned_cols=119 Identities=22% Similarity=0.153 Sum_probs=66.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEE--EEEeEE-cC--eEEEEEeCCCCCCcccchhhhhHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSV-NG--IKVTFIDTPGFLPSCVRNVKRNRKIM 195 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~--~~~~~~-~G--~~v~LIDTPGl~~~~~~~~~~~~~il 195 (747)
..+|+.|||-+-||||+|+...+..+.+..++ .|..+. ....+. .| .++.|+||+|-. .-..+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsd---ptvgvdffarlie~~pg~riklqlwdtagqe--------rfrsi- 74 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSD---PTVGVDFFARLIELRPGYRIKLQLWDTAGQE--------RFRSI- 74 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCC---CccchHHHHHHHhcCCCcEEEEEEeeccchH--------HHHHH-
Confidence 35799999999999999999998766555442 222211 101111 23 467899999952 12222
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 196 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 196 ~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
.+.+-+. .-.+++|.++.....-..-...++......+.....-+.+|-+|+|+..
T Consensus 75 --tksyyrn--svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 75 --TKSYYRN--SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred --HHHHhhc--ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 2333332 2356666565543211112234444444444222334567889999873
No 361
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.058 Score=63.47 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=67.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecC-------CC---------CceeeEEEEEeEE---c--CeEEEEEeCCCC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDA-------FQ---------PATDCIREVKGSV---N--GIKVTFIDTPGF 180 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~-------~~---------~tT~~~~~~~~~~---~--G~~v~LIDTPGl 180 (747)
-.+++++|.-+.|||+|+..|.++.....+. +. +++-......... . .+-+.++||||-
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 3589999999999999999998765433210 10 1111111111111 2 245789999997
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 181 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 181 ~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~l-d~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
-+. +.+....++ .+|.+++|++. ++... +-.++++...+. ..++++|+||.|.+.
T Consensus 208 VnF-----------~DE~ta~l~--~sDgvVlvvDv~EGVml--ntEr~ikhaiq~-----~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 208 VNF-----------SDETTASLR--LSDGVVLVVDVAEGVML--NTERIIKHAIQN-----RLPIVVVINKVDRLI 263 (971)
T ss_pred ccc-----------hHHHHHHhh--hcceEEEEEEcccCcee--eHHHHHHHHHhc-----cCcEEEEEehhHHHH
Confidence 543 122223332 35888777644 44332 344555555554 579999999999863
No 362
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=95.75 E-value=0.013 Score=60.04 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEc-Ce--EEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~--~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..++++|||-.++||++++-+.... .+... +-|+--+-......++ |+ .+.++||+|-.+- + .
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~-~fp~~-yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-------D-r---- 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTN-AFPEE-YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-------D-R---- 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccC-cCccc-ccCeEEccceEEEEecCCCEEEEeeeecCCCccc-------c-c----
Confidence 4689999999999999998776543 22221 2222223344445563 65 4689999986433 1 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccC-CCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISM-GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~-~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++ .+.-...|++|+|..++.... ..--...+-.++... -..|+|+|.||.|+-
T Consensus 69 lR-plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 69 LR-PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLR 122 (198)
T ss_pred cc-ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhh
Confidence 11 223346799999877654431 111223444444443 257999999999987
No 363
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.14 Score=50.18 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=67.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
+.+|+.+|-.++||+|++-.|.-.....+- .|.....-..++.+..+.+.|.-|-. ++..--+++
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~i----pTvGFnvetVtykN~kfNvwdvGGqd-----------~iRplWrhY 81 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTI----PTVGFNVETVTYKNVKFNVWDVGGQD-----------KIRPLWRHY 81 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccc----cccceeEEEEEeeeeEEeeeeccCch-----------hhhHHHHhh
Confidence 589999999999999999998643322221 13333333445567888999987742 121222233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-cc-cccEEEEEeccCCCC
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AI-WFNTILVMTHSSSTL 255 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~i-~k~vIIVLTK~D~l~ 255 (747)
. .+...++||++...... -...-..+.++.+. ++ .-+++|..||-|+..
T Consensus 82 y--~gtqglIFV~Dsa~~dr---~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 82 Y--TGTQGLIFVVDSADRDR---IEEARNELHRIINDREMRDAIILILANKQDLPD 132 (180)
T ss_pred c--cCCceEEEEEeccchhh---HHHHHHHHHHHhCCHhhhcceEEEEecCccccc
Confidence 3 24567888854332211 12344455665553 33 346777889999764
No 364
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.63 E-value=0.0087 Score=64.32 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG 144 (747)
..-.|+++|++||||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999865
No 365
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.15 Score=55.42 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=72.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC------CCc-ee---c-----CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCc
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQ------TKT-ET---D-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 183 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~------~~a-~v---s-----~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~ 183 (747)
.....||..||.-+-||+||..+|.+. ..+ .. . ...+.|-....+..+...+.+-.+|+||-.+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD- 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD- 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-
Confidence 345689999999999999999999541 111 11 1 1224566666777777889999999999642
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 184 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 184 ~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~l-d~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
-+.+.|... .+.|..++|++. |..-. +-+.-+ .+.+..| -..+++.+||+|...
T Consensus 88 ---------YvKNMItgA---aqmDgAILVVsA~dGpmP--qTrEHi-LlarqvG---vp~ivvflnK~Dmvd 142 (394)
T COG0050 88 ---------YVKNMITGA---AQMDGAILVVAATDGPMP--QTREHI-LLARQVG---VPYIVVFLNKVDMVD 142 (394)
T ss_pred ---------HHHHHhhhH---HhcCccEEEEEcCCCCCC--cchhhh-hhhhhcC---CcEEEEEEecccccC
Confidence 222333332 245766666644 44332 121111 1223333 246788899999985
No 366
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.0059 Score=62.02 Aligned_cols=53 Identities=26% Similarity=0.513 Sum_probs=37.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDT 177 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDT 177 (747)
..-++|.|++||||||+++.|+....... ++..||+.+.. ++++|..+.||+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~-SVS~TTR~pR~--gEv~G~dY~Fvs~ 56 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRF-SVSATTRKPRP--GEVDGVDYFFVTE 56 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEE-EEEeccCCCCC--CCcCCceeEeCCH
Confidence 45689999999999999999998773332 34456665543 3456777777654
No 367
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=95.57 E-value=0.087 Score=58.36 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcee----------cC----------------------CCCceeeEEEEEeEE
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTET----------DA----------------------FQPATDCIREVKGSV 167 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v----------s~----------------------~~~tT~~~~~~~~~~ 167 (747)
...||.+-+|..--||||||-.|+-..++.. +. -.+.|-++....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3468999999999999999999964322211 10 112344554444444
Q ss_pred cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 168 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 168 ~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
.-+++++.||||-..- .. +.+.. -+.+|+.+++++.-.- . ...-.--..|...+| -+++|+.
T Consensus 84 ~KRkFIiADTPGHeQY-------TR---NMaTG---ASTadlAIlLVDAR~G-v-l~QTrRHs~I~sLLG---IrhvvvA 145 (431)
T COG2895 84 EKRKFIIADTPGHEQY-------TR---NMATG---ASTADLAILLVDARKG-V-LEQTRRHSFIASLLG---IRHVVVA 145 (431)
T ss_pred ccceEEEecCCcHHHH-------hh---hhhcc---cccccEEEEEEecchh-h-HHHhHHHHHHHHHhC---CcEEEEE
Confidence 6789999999996311 11 11111 1346777666443210 0 011122234555566 4699999
Q ss_pred EeccCCCC
Q 004520 248 MTHSSSTL 255 (747)
Q Consensus 248 LTK~D~l~ 255 (747)
+||+|+..
T Consensus 146 VNKmDLvd 153 (431)
T COG2895 146 VNKMDLVD 153 (431)
T ss_pred Eeeecccc
Confidence 99999984
No 368
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.084 Score=62.82 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeE------------------EcCeEEEEEeCCCCCC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS------------------VNGIKVTFIDTPGFLP 182 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~------------------~~G~~v~LIDTPGl~~ 182 (747)
++.-++|+|..-+||+-|+..|-+.++.. +...+.|..+-...+. +.-..+.+|||||-..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 34568999999999999999998865443 3333444443322211 1112479999999532
Q ss_pred cccchhhhhHHHHHHHH-HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 183 SCVRNVKRNRKIMLSVK-KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 183 ~~~~~~~~~~~il~~ik-~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
. . .++ +.. +-.|+.|+|+++-.- ...+-..-++.|+.. ..|+||.+||+|.+
T Consensus 553 F--t----------nlRsrgs--slC~~aIlvvdImhG-lepqtiESi~lLR~r-----ktpFivALNKiDRL 605 (1064)
T KOG1144|consen 553 F--T----------NLRSRGS--SLCDLAILVVDIMHG-LEPQTIESINLLRMR-----KTPFIVALNKIDRL 605 (1064)
T ss_pred h--h----------hhhhccc--cccceEEEEeehhcc-CCcchhHHHHHHHhc-----CCCeEEeehhhhhh
Confidence 1 0 111 111 234888888765432 112344455556554 57999999999987
No 369
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.52 E-value=0.012 Score=59.42 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDT 177 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDT 177 (747)
..-|+|+|++||||||+++.|+.+.........-||+.... ++.+|..+.|++.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~--gE~~G~dY~fvs~ 57 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRP--GDEEGKTYFFLTI 57 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCC--CCCCCceeEeCCH
Confidence 45689999999999999999997643222334445554432 2345666666543
No 370
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.44 E-value=0.012 Score=56.40 Aligned_cols=54 Identities=26% Similarity=0.488 Sum_probs=34.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeEEcCeEEEEEeCCCC
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGF 180 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 180 (747)
|+|+|++|+||||+++.|...-.... .....+|+.... .+.+|..+.++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~--~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRP--GEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCC--CccCCceeEEeCHHHH
Confidence 68999999999999999997632221 122334444432 2346777778775444
No 371
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=95.42 E-value=0.013 Score=58.15 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=69.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcee---cCC--CCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHH
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTET---DAF--QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRK 193 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v---s~~--~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~ 193 (747)
..+.++|+++|.-=||||||+=.... +++.- +.. ...++.. ..+-...++.|+||+|-.....
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~E-nkFn~kHlsTlQASF~~kk~---n~ed~ra~L~IWDTAGQErfHA-------- 77 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVE-NKFNCKHLSTLQASFQNKKV---NVEDCRADLHIWDTAGQERFHA-------- 77 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHH-hhcchhhHHHHHHHHhhccc---ccccceeeeeeeeccchHhhhc--------
Confidence 45678999999999999999866653 22221 100 0111211 1111234678999999633211
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 194 IMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 194 il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+-. |--.+.+..|+|.++.....-..-+.++..|+..+|.+ .-.+||-||.|+-
T Consensus 78 ----LGP-IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLE 131 (218)
T KOG0088|consen 78 ----LGP-IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLE 131 (218)
T ss_pred ----cCc-eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHH
Confidence 110 11135688888877653221012346777788888865 5678999999974
No 372
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.39 E-value=0.14 Score=58.57 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCce--------------ecCCCCceeeEEEEEeEEc-----CeEEEEEeCCCCCCcc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTE--------------TDAFQPATDCIREVKGSVN-----GIKVTFIDTPGFLPSC 184 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~--------------vs~~~~tT~~~~~~~~~~~-----G~~v~LIDTPGl~~~~ 184 (747)
+..||..---|||||...|+...... ...-.+.|-..+.+...+. ...+.||||||--+..
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 56788888999999999996422111 1112355666655554442 2578999999987764
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 185 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 185 ~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
-+ +.+++.. | ...|+|++...- -+.+++...--.+ +..--+|.|+||+|+...
T Consensus 91 YE-------VSRSLAA----C--EGalLvVDAsQG----veAQTlAN~YlAl--e~~LeIiPViNKIDLP~A 143 (603)
T COG0481 91 YE-------VSRSLAA----C--EGALLVVDASQG----VEAQTLANVYLAL--ENNLEIIPVLNKIDLPAA 143 (603)
T ss_pred EE-------ehhhHhh----C--CCcEEEEECccc----hHHHHHHHHHHHH--HcCcEEEEeeecccCCCC
Confidence 32 2233333 3 344555443321 1233333333332 224678999999998743
No 373
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.075 Score=60.24 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh--CCCCceecCC------CCcee-------------eEEEEEeEEcCeEEEEEeCCCCC
Q 004520 123 IRILVLGKTGVGKSATINSIF--DQTKTETDAF------QPATD-------------CIREVKGSVNGIKVTFIDTPGFL 181 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLl--G~~~a~vs~~------~~tT~-------------~~~~~~~~~~G~~v~LIDTPGl~ 181 (747)
-+.+||-.|-+|||||--.|+ |......+.. ..+|. ....-.+.+.|..+.|.||||-.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 357999999999999998874 3222111111 11111 11222356689999999999987
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 182 ~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
+.+ +...+.+. .+|..+.|++...- .+.++++.+.=. . -...|++-.+||+|.-
T Consensus 93 DFS-------EDTYRtLt------AvDsAvMVIDaAKG----iE~qT~KLfeVc-r-lR~iPI~TFiNKlDR~ 146 (528)
T COG4108 93 DFS-------EDTYRTLT------AVDSAVMVIDAAKG----IEPQTLKLFEVC-R-LRDIPIFTFINKLDRE 146 (528)
T ss_pred ccc-------hhHHHHHH------hhheeeEEEecccC----ccHHHHHHHHHH-h-hcCCceEEEeeccccc
Confidence 763 22333322 35888888544311 233455444322 1 1157999999999964
No 374
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.32 E-value=0.12 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57999999999999999999964
No 375
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.30 E-value=0.15 Score=56.61 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=39.3
Q ss_pred EEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccC
Q 004520 173 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 252 (747)
Q Consensus 173 ~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D 252 (747)
.+|||+|+... ..-..+++.+++ ..+|+|+.+. +.++...+.+.++.+-|. -++-+-|.+
T Consensus 215 ~iInT~g~i~~-----egy~~llhai~~----f~v~vviVLg----------~ErLy~~lkk~~~~~~~v-~vv~lpKsg 274 (415)
T KOG2749|consen 215 CIINTCGWIEG-----EGYAALLHAIKA----FEVDVVIVLG----------QERLYSSLKKDLPPKKNV-RVVKLPKSG 274 (415)
T ss_pred eEEeccceecc-----ccHHHHHHHHHH----cCccEEEEec----------cHHHHHHHHhhccccccc-eEEEecCCC
Confidence 78999999763 223445554444 4678888771 236888888888766343 344556665
Q ss_pred CC
Q 004520 253 ST 254 (747)
Q Consensus 253 ~l 254 (747)
..
T Consensus 275 Gv 276 (415)
T KOG2749|consen 275 GV 276 (415)
T ss_pred Ce
Confidence 44
No 376
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.28 E-value=0.017 Score=59.03 Aligned_cols=55 Identities=20% Similarity=0.386 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeEEcCeEEEEEeC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDT 177 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDT 177 (747)
....-|+|+|++|+||||+++.|..... .. .....+|+.... .+.+|..+.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~--~e~~g~~y~fv~~ 66 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRP--GEIDGVDYHFVTP 66 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCC--CCCCCCeeeeCCH
Confidence 3556788999999999999999975432 22 223334433221 2334555555543
No 377
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=0.036 Score=55.81 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCC----CceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQ----PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~----~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
...|+|+|.-|+||+||+-++-....-..+... -+|.........+++..+.|+|--|- .....+++.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQ--------e~lrSlw~~ 88 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQ--------ESLRSLWKK 88 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCCh--------HHHHHHHHH
Confidence 467999999999999999776432111111111 12334444555667788999997663 233444443
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
.-. .+|+++||++......-......++.+.+.= .--+.|+++..||-|.-
T Consensus 89 yY~-----~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E-~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 89 YYW-----LAHGIIYVIDATDRERFEESKTAFEKVVENE-KLEGAPVLVLANKQDLQ 139 (197)
T ss_pred HHH-----HhceeEEeecCCCHHHHHHHHHHHHHHHHHH-HhcCCchhhhcchhhhh
Confidence 322 3599999976543221111223333332210 01257999999999865
No 378
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.26 E-value=0.017 Score=65.95 Aligned_cols=92 Identities=15% Similarity=0.272 Sum_probs=53.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEE----EeEEcC--eEEEEE-----eCCCCCCcccchhhh
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREV----KGSVNG--IKVTFI-----DTPGFLPSCVRNVKR 190 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~----~~~~~G--~~v~LI-----DTPGl~~~~~~~~~~ 190 (747)
.=+++|+|.+|+|||||+|.|.+.....+..+.....+..++ .....+ .+-++| |+||.....
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~------ 230 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG------ 230 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH------
Confidence 348999999999999999999975433222111110000000 001112 145677 899986442
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEeccCcc
Q 004520 191 NRKIMLSVKKFIRRSPPDIVLYFERLDLIS 220 (747)
Q Consensus 191 ~~~il~~ik~~I~~~~~DvVL~V~~ld~~t 220 (747)
.....++..+++..+-|++|+++++.++.
T Consensus 231 -~~~a~~iAEyFrd~G~~Vll~~DslTr~A 259 (434)
T PRK08472 231 -AFCAMSVAEYFKNQGLDVLFIMDSVTRFA 259 (434)
T ss_pred -HHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 22234566667666789888887766543
No 379
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.20 E-value=0.013 Score=70.04 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEE--------------------------------------
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 164 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~-------------------------------------- 164 (747)
..|+|||..++||||.++++.|+.....+. .-+|+.+....
T Consensus 30 P~I~vvG~QSsGKSSvLE~lvG~~flpRg~-givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~ 108 (657)
T KOG0446|consen 30 PQIVVVGGQSSGKSSVLESLVGFVFLPRGV-GIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETD 108 (657)
T ss_pred CceEEecCCCCcchhHHHHhhccccccccc-cceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhhHH
Confidence 469999999999999999999965444332 12333211100
Q ss_pred ---------------eEE---cCeEEEEEeCCCCCCcccchh--hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCC
Q 004520 165 ---------------GSV---NGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFS 224 (747)
Q Consensus 165 ---------------~~~---~G~~v~LIDTPGl~~~~~~~~--~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~ 224 (747)
..+ .-.++++||.||+...-..++ .....+...+..++ .+++++++.+...... ..
T Consensus 109 ~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi--~~~~~iILav~~an~d--~a 184 (657)
T KOG0446|consen 109 RITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYI--EKPNRIILAVTPANSD--IA 184 (657)
T ss_pred HhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhc--cccchhhhhccchhhh--hh
Confidence 000 113579999999987644321 22333444444454 3566666654222111 11
Q ss_pred cHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 225 DFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 225 D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
-...++...+. . .-+..++-|+||+|.++.
T Consensus 185 ts~alkiarev-D-p~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 185 TSPALVVAREV-D-PGGSRTLEVITKFDFMDK 214 (657)
T ss_pred cCHHHHHHHhh-C-CCccchhHHhhhHHhhhc
Confidence 22345555554 1 226789999999999853
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.19 E-value=0.016 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|+|...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 589999999999999999999653
No 381
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.18 E-value=0.015 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.-.|+|+|++|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999864
No 382
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.17 E-value=0.0096 Score=60.06 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=61.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEE--EEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIRE--VKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~--~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
..-++++|+|--+|||||+|.+....- +.-+.-...-.+... +........+.++||+|-.+. +.+.++
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf--------DaItkA 88 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF--------DAITKA 88 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH--------HHHHHH
Confidence 345899999999999999999987421 110000000000000 111112345678888885322 222222
Q ss_pred HHHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld-~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~p 256 (747)
+- .++...++|..-. +.+. ..-..+.+.+....+ ..|+++|-||+|++..
T Consensus 89 ---yy--rgaqa~vLVFSTTDr~SF-ea~~~w~~kv~~e~~---~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 89 ---YY--RGAQASVLVFSTTDRYSF-EATLEWYNKVQKETE---RIPTVFVQNKIDLVED 139 (246)
T ss_pred ---Hh--ccccceEEEEecccHHHH-HHHHHHHHHHHHHhc---cCCeEEeeccchhhHh
Confidence 22 2566666664322 2211 011122333333322 5799999999999854
No 383
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.077 Score=63.36 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCceecCCCC---------------ceeeEEEEEeEEcCeEEEEEeCCCCCCcccch
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP---------------ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 187 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~---------------tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~ 187 (747)
-+|.++...--||+||+.+|+..+-.+.+..++ .|.+...+.....+..+.|||+||-.+...
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s-- 87 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS-- 87 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh--
Confidence 378999999999999999998766544433333 233334444555788999999999877532
Q ss_pred hhhhHHHHHHHHHHHhcCCCC-EEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCC
Q 004520 188 VKRNRKIMLSVKKFIRRSPPD-IVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 188 ~~~~~~il~~ik~~I~~~~~D-vVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l 254 (747)
++......+ | .+++|+...+... +...+++..-.. +..+|+|+||+|.+
T Consensus 88 ---------evssas~l~--d~alvlvdvvegv~~--qt~~vlrq~~~~-----~~~~~lvinkidrl 137 (887)
T KOG0467|consen 88 ---------EVSSASRLS--DGALVLVDVVEGVCS--QTYAVLRQAWIE-----GLKPILVINKIDRL 137 (887)
T ss_pred ---------hhhhhhhhc--CCcEEEEeeccccch--hHHHHHHHHHHc-----cCceEEEEehhhhH
Confidence 122222222 4 4455555555543 233444422221 35789999999955
No 384
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.11 E-value=0.04 Score=58.62 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CCceec-CCCCceeeEEEEEe---EEcCeEEEEEeCCCCCCc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQ-TKTETD-AFQPATDCIREVKG---SVNGIKVTFIDTPGFLPS 183 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~-~~a~vs-~~~~tT~~~~~~~~---~~~G~~v~LIDTPGl~~~ 183 (747)
.-|.|+|+..+|||.|+|.|++. ..+.++ ...++|+.+-.... ...+..+.++||.|+.+.
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 46889999999999999999985 345554 35577776433222 124568999999999883
No 385
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.09 E-value=0.15 Score=43.67 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCc
Q 004520 125 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 183 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~ 183 (747)
+++.|+.|+||||+.+.|...-.. . +. ++. ..+ .+.++|+|+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--~---g~--~v~----~~~--d~iivD~~~~~~~ 47 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--R---GK--RVL----LID--DYVLIDTPPGLGL 47 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--C---CC--eEE----EEC--CEEEEeCCCCccc
Confidence 678899999999999988642100 0 00 000 001 7899999998654
No 386
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.97 E-value=0.077 Score=56.33 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=52.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 201 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~ 201 (747)
.-++++-|..|+||||++.+++.+-.. .| +.+|..+.- .-..+..+...
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~-------------------~G--LRlIev~k~----------~L~~l~~l~~~ 100 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYAD-------------------QG--LRLIEVSKE----------DLGDLPELLDL 100 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhh-------------------cC--ceEEEECHH----------HhccHHHHHHH
Confidence 357999999999999999999974211 12 233333221 01112233344
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEe
Q 004520 202 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 249 (747)
Q Consensus 202 I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLT 249 (747)
++..+...||||++++ +.........++.+.+---.....|++|..|
T Consensus 101 l~~~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred HhcCCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 4445667889998765 3332233444544444211223456666554
No 387
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=0.047 Score=59.72 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=67.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc---------ee--cCCCCc-eeeEE------EEE----eEEc------CeE
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKT---------ET--DAFQPA-TDCIR------EVK----GSVN------GIK 171 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~~~a---------~v--s~~~~t-T~~~~------~~~----~~~~------G~~ 171 (747)
...++|.++|..--|||||..+|.|--.. .+ -.+..+ -.+|. .+. +..+ -+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45789999999999999999999873111 00 001100 00110 000 1111 257
Q ss_pred EEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEecc
Q 004520 172 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHS 251 (747)
Q Consensus 172 v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~ 251 (747)
+.|+|.||-. -.+..+-.-. .-.|..|+|+..+......+-.+-|-.| ++.| -+++|||-||.
T Consensus 88 VSfVDaPGHe-----------~LMATMLsGA--AlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig---ik~iiIvQNKI 150 (415)
T COG5257 88 VSFVDAPGHE-----------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTREHLMAL-EIIG---IKNIIIVQNKI 150 (415)
T ss_pred EEEeeCCchH-----------HHHHHHhcch--hhhcceEEEEecCCCCCCCchHHHHHHH-hhhc---cceEEEEeccc
Confidence 8999999952 1122111000 1248888888777655434443333333 3334 47999999999
Q ss_pred CCCCC
Q 004520 252 SSTLP 256 (747)
Q Consensus 252 D~l~p 256 (747)
|+...
T Consensus 151 DlV~~ 155 (415)
T COG5257 151 DLVSR 155 (415)
T ss_pred ceecH
Confidence 99853
No 388
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=94.91 E-value=0.055 Score=60.38 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCce----------------eeEEEEEe---------------
Q 004520 117 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT----------------DCIREVKG--------------- 165 (747)
Q Consensus 117 ~~~~~~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT----------------~~~~~~~~--------------- 165 (747)
+..+..+.+.+.|..+.|||||.-+|.--.. .+..+.| .+.....+
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~---DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRL---DDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCC---CCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 4456789999999999999999988842110 1111111 11111100
Q ss_pred --------EEcCeEEEEEeCCCCCCcccchhhhhHHHHH-HHHHHHhcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHH
Q 004520 166 --------SVNGIKVTFIDTPGFLPSCVRNVKRNRKIML-SVKKFIRRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEV 235 (747)
Q Consensus 166 --------~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~-~ik~~I~~~~~DvVL~V~~ld~-~t~~~~D~~lLk~L~e~ 235 (747)
.-.++-+.|+||-|-. .++. .++..+ -.++|-.++++..+. .+. .-++-+..+.
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHE-----------pwLrTtirGL~-gqk~dYglLvVaAddG~~~--~tkEHLgi~~-- 252 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHE-----------PWLRTTIRGLL-GQKVDYGLLVVAADDGVTK--MTKEHLGIAL-- 252 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCcc-----------HHHHHHHHHHh-ccccceEEEEEEccCCcch--hhhHhhhhhh--
Confidence 1123457899998852 1222 333333 347899999887653 221 1122222222
Q ss_pred hCCcccccEEEEEeccCCCCC
Q 004520 236 FGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 236 fG~~i~k~vIIVLTK~D~l~p 256 (747)
.+..|+|+|+||+|..+.
T Consensus 253 ---a~~lPviVvvTK~D~~~d 270 (527)
T COG5258 253 ---AMELPVIVVVTKIDMVPD 270 (527)
T ss_pred ---hhcCCEEEEEEecccCcH
Confidence 236899999999999854
No 389
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.019 Score=60.79 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKT 148 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a 148 (747)
-|+|||++|+|||||+|.|.|-...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999996544
No 390
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.88 E-value=0.023 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
.|+|.|+|||||||+.+.|..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 391
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=94.82 E-value=0.052 Score=54.16 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=60.4
Q ss_pred EEEEcCCCCcHHHHHHHHh-----CCCCcee-cCCCCce----------eeEEEEE-------------------eEEc-
Q 004520 125 ILVLGKTGVGKSATINSIF-----DQTKTET-DAFQPAT----------DCIREVK-------------------GSVN- 168 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLl-----G~~~a~v-s~~~~tT----------~~~~~~~-------------------~~~~- 168 (747)
++|.|..|+|||||||.++ |.+.+.. ..+.... ....... ....
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 6799999999999999999 3333332 3332110 0111111 0112
Q ss_pred -CeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 169 -GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 169 -G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
...++||-|.|+.++.. . ......+.. ....+.++.|++...+.. ...+...+.+.+ ..-=+||
T Consensus 83 ~~~d~IiIE~sG~a~p~~----l-~~~~~~~~~---~~~~~~iI~vVDa~~~~~---~~~~~~~~~~Qi----~~ADvIv 147 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAP----L-ILQDPPLKE---DFRLDSIITVVDATNFDE---LENIPELLREQI----AFADVIV 147 (178)
T ss_dssp GC-SEEEEEEECSSGGGG----H-HHHSHHHHH---HESESEEEEEEEGTTHGG---HTTHCHHHHHHH----CT-SEEE
T ss_pred CCcCEEEECCccccccch----h-hhccccccc---cccccceeEEeccccccc---cccchhhhhhcc----hhcCEEE
Confidence 35789999999877632 1 001122222 235688888876654421 111222222221 2345789
Q ss_pred EeccCCCC
Q 004520 248 MTHSSSTL 255 (747)
Q Consensus 248 LTK~D~l~ 255 (747)
+||+|+++
T Consensus 148 lnK~D~~~ 155 (178)
T PF02492_consen 148 LNKIDLVS 155 (178)
T ss_dssp EE-GGGHH
T ss_pred EeccccCC
Confidence 99999874
No 392
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.81 E-value=0.11 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 004520 123 IRILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~ 146 (747)
..++|+|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998753
No 393
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.80 E-value=0.034 Score=58.57 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHH------hCCCCcee
Q 004520 125 ILVLGKTGVGKSATINSI------FDQTKTET 150 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsL------lG~~~a~v 150 (747)
-+|||+||+||||..|.+ +|+....|
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV 36 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV 36 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEE
Confidence 589999999999999877 56665655
No 394
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.73 E-value=0.022 Score=58.10 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||+|-|.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999999988543
No 395
>PTZ00099 rab6; Provisional
Probab=94.73 E-value=0.16 Score=50.71 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=41.2
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhCCcccccEEEEE
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVM 248 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D-~~lLk~L~e~fG~~i~k~vIIVL 248 (747)
.++.|+||||.... .. ....++ ..+|++|+|.+++.... ..+ ...+..+....+ ...|+|+|.
T Consensus 29 v~l~iwDt~G~e~~--------~~---~~~~~~--~~ad~~ilv~D~t~~~s-f~~~~~w~~~i~~~~~--~~~piilVg 92 (176)
T PTZ00099 29 VRLQLWDTAGQERF--------RS---LIPSYI--RDSAAAIVVYDITNRQS-FENTTKWIQDILNERG--KDVIIALVG 92 (176)
T ss_pred EEEEEEECCChHHh--------hh---ccHHHh--CCCcEEEEEEECCCHHH-HHHHHHHHHHHHHhcC--CCCeEEEEE
Confidence 57899999997432 11 122233 36899999987765321 111 123333433322 246889999
Q ss_pred eccCCC
Q 004520 249 THSSST 254 (747)
Q Consensus 249 TK~D~l 254 (747)
||+|+.
T Consensus 93 NK~DL~ 98 (176)
T PTZ00099 93 NKTDLG 98 (176)
T ss_pred ECcccc
Confidence 999985
No 396
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.2 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999643
No 397
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.60 E-value=0.11 Score=58.56 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 119 ~~~~lrIlVVGk~GvGKSSLINsLlG 144 (747)
.....+|+|+|+.++|||||.+-|++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 34567999999999999998866644
No 398
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.52 E-value=0.2 Score=49.36 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=38.1
Q ss_pred cCeEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEE
Q 004520 168 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 247 (747)
Q Consensus 168 ~G~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIV 247 (747)
....++|||||+.... ... ..+ ..+|.+++++..+..... .-..+++.+.+. ..+..+|
T Consensus 91 ~~~d~viiDtpp~~~~---------~~~----~~l--~~aD~vliv~~~~~~~~~-~~~~~~~~l~~~-----~~~~~vV 149 (179)
T cd03110 91 EGAELIIIDGPPGIGC---------PVI----ASL--TGADAALLVTEPTPSGLH-DLERAVELVRHF-----GIPVGVV 149 (179)
T ss_pred cCCCEEEEECcCCCcH---------HHH----HHH--HcCCEEEEEecCCcccHH-HHHHHHHHHHHc-----CCCEEEE
Confidence 4568999999975421 111 122 246899999776644321 112344444332 3567899
Q ss_pred EeccCC
Q 004520 248 MTHSSS 253 (747)
Q Consensus 248 LTK~D~ 253 (747)
+|++|.
T Consensus 150 ~N~~~~ 155 (179)
T cd03110 150 INKYDL 155 (179)
T ss_pred EeCCCC
Confidence 999984
No 399
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=94.50 E-value=0.025 Score=63.21 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh---CCCCc--eecC------------CCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccc
Q 004520 124 RILVLGKTGVGKSATINSIF---DQTKT--ETDA------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLl---G~~~a--~vs~------------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~ 186 (747)
+|.|+....+||+|+.-.|+ |.... .+.. -.+.|-....+.+.|.|.++.+|||||-.+...
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l- 117 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL- 117 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE-
Confidence 68999999999999998885 21111 1111 123455566677889999999999999887643
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccCCCC
Q 004520 187 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 255 (747)
Q Consensus 187 ~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D~l~ 255 (747)
++.+|++. .|.++.|.+.++--. .+...+.+.-.+ ...|.+..+||.|.+.
T Consensus 118 ----------everclrv--ldgavav~dasagve-~qtltvwrqadk-----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 ----------EVERCLRV--LDGAVAVFDASAGVE-AQTLTVWRQADK-----FKIPAHCFINKMDKLA 168 (753)
T ss_pred ----------EHHHHHHH--hcCeEEEEeccCCcc-cceeeeehhccc-----cCCchhhhhhhhhhhh
Confidence 24556643 377777755543221 122223322222 3578889999999873
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.44 E-value=0.028 Score=58.90 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKT 148 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a 148 (747)
-++|+|++|+|||||+|.|-|-...
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4899999999999999999875544
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=94.44 E-value=0.15 Score=56.00 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 004520 125 ILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~ 145 (747)
.+|.|.-|+|||||||.|+..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999853
No 402
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.37 Score=48.40 Aligned_cols=118 Identities=18% Similarity=0.338 Sum_probs=60.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC---CCCceecCCCCceeeEEEEEeEEcCe--EEEEEeCC----------CCCCccc
Q 004520 121 FSIRILVLGKTGVGKSATINSIFD---QTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTP----------GFLPSCV 185 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG---~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTP----------Gl~~~~~ 185 (747)
..++|.|-|+|||||||++-.|.. ++-+.++.+ -|.++.. +|. -+.++|+. |+..+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf--~t~EVR~-----gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF--ITPEVRE-----GGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE--Eeeeeec-----CCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 468999999999999999988753 233444321 1222211 121 23445544 1111111
Q ss_pred -----chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccC
Q 004520 186 -----RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 252 (747)
Q Consensus 186 -----~~~~~~~~il~~ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D 252 (747)
.-....+-...++++.++ .+|++++ +.+..-. .....+.+.+.+.++. .+|.|.++-+-+
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~--~aDvIII-DEIGpME--lks~~f~~~ve~vl~~--~kpliatlHrrs 141 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALE--EADVIII-DEIGPME--LKSKKFREAVEEVLKS--GKPLIATLHRRS 141 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhh--cCCEEEE-ecccchh--hccHHHHHHHHHHhcC--CCcEEEEEeccc
Confidence 101112233345555543 3576654 3222211 1234566777777653 478888877654
No 403
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.20 E-value=0.04 Score=46.59 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 004520 124 RILVLGKTGVGKSATINSIF 143 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLl 143 (747)
..+|.|++|+||||++.+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998873
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.20 E-value=0.036 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 004520 123 IRILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~ 146 (747)
-.++|+|++|+|||||+++|++.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999999853
No 405
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.74 Score=51.13 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~ 145 (747)
-..|.++|.-|+||||++|.|.+.
T Consensus 188 f~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhcc
Confidence 357899999999999999999875
No 406
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.09 E-value=0.17 Score=57.56 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 004520 121 FSIRILVLGKTGVGKSATINSIF 143 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLl 143 (747)
..+.|.|||+.-+||||||..+.
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CceEEEeecCcccCchhHHHHHH
Confidence 46899999999999999999885
No 407
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.09 E-value=0.04 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 004520 125 ILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~ 145 (747)
|+++|+||+||||++..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999853
No 408
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.042 Score=56.78 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 409
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.02 E-value=0.045 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999643
No 410
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.94 E-value=0.049 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 004520 123 IRILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~ 145 (747)
-.++|+|+||+||||++..|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46899999999999999999874
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.83 E-value=0.33 Score=49.26 Aligned_cols=22 Identities=32% Similarity=0.221 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 004520 123 IRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG 144 (747)
=+++|+|+.|+|||||+.+|.+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3689999999999999999973
No 412
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.81 E-value=0.049 Score=55.27 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 413
>PRK13695 putative NTPase; Provisional
Probab=93.80 E-value=0.32 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
+|+|+|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999997653
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.80 E-value=0.047 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 004520 123 IRILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~ 146 (747)
-.++|+|++|+|||||++.|.|-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 468999999999999999999964
No 415
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.05 Score=55.65 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 416
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.79 E-value=0.049 Score=55.41 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999999643
No 417
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.78 E-value=0.05 Score=55.40 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 418
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.73 E-value=0.052 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 419
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.047 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 420
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.69 E-value=0.054 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.63 E-value=0.36 Score=49.84 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 004520 123 IRILVLGKTGVGKSATINSIF 143 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLl 143 (747)
-.++|.|+.|+|||||++++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 468999999999999999986
No 422
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.63 E-value=0.052 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999964
No 423
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.055 Score=55.32 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999643
No 424
>PRK07261 topology modulation protein; Provisional
Probab=93.62 E-value=0.053 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
+|+|+|.||+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 425
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.62 E-value=0.054 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 426
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.59 E-value=0.054 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 004520 123 IRILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG 144 (747)
-.++|+|++|+|||||+|.+++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3789999999999999999985
No 427
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.58 E-value=0.51 Score=45.15 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=54.0
Q ss_pred EEEcCCCCcHHHHHHHHh------CCCCceec-CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 126 LVLGKTGVGKSATINSIF------DQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 126 lVVGk~GvGKSSLINsLl------G~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
..-|+.|+||||+--.+. |.....++ +..+... ...++|||||+.... ....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~---------~~~~-- 62 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISD---------NVLD-- 62 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCH---------HHHH--
Confidence 356899999999865553 22222222 1111111 167899999985422 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEeccC
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 252 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK~D 252 (747)
.+. .+|.+++|...+..+.. .-..+++.+.+.. ...++.+|+|+++
T Consensus 63 --~l~--~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~---~~~~~~lVvN~~~ 108 (139)
T cd02038 63 --FFL--AADEVIVVTTPEPTSIT-DAYALIKKLAKQL---RVLNFRVVVNRAE 108 (139)
T ss_pred --HHH--hCCeEEEEcCCChhHHH-HHHHHHHHHHHhc---CCCCEEEEEeCCC
Confidence 222 34899999766544321 1134455555432 2357789999986
No 428
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.58 E-value=0.056 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999964
No 429
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=93.58 E-value=0.068 Score=55.57 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEE-EEEEeccCccCCCCcH---HHHHHHHHHhCCcccccEE
Q 004520 170 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIV-LYFERLDLISMGFSDF---PLLKLMTEVFGTAIWFNTI 245 (747)
Q Consensus 170 ~~v~LIDTPGl~~~~~~~~~~~~~il~~ik~~I~~~~~DvV-L~V~~ld~~t~~~~D~---~lLk~L~e~fG~~i~k~vI 245 (747)
..+.++|+||-.+--. .--++..+-++++...+.++ +|++... +-. ...+ -.+..+.... ..-.|.|
T Consensus 98 ddylifDcPGQIELyt-----H~pVm~~iv~hl~~~~F~~c~Vylldsq-f~v-D~~KfiSG~lsAlsAMi--~lE~P~I 168 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYT-----HLPVMPQIVEHLKQWNFNVCVVYLLDSQ-FLV-DSTKFISGCLSALSAMI--SLEVPHI 168 (273)
T ss_pred CCEEEEeCCCeeEEee-----cChhHHHHHHHHhcccCceeEEEEeccc-hhh-hHHHHHHHHHHHHHHHH--HhcCcch
Confidence 3689999999765421 22344555555655445544 5553221 111 0111 1222222221 2357999
Q ss_pred EEEeccCCCC
Q 004520 246 LVMTHSSSTL 255 (747)
Q Consensus 246 IVLTK~D~l~ 255 (747)
=|++|.|++.
T Consensus 169 NvlsKMDLlk 178 (273)
T KOG1534|consen 169 NVLSKMDLLK 178 (273)
T ss_pred hhhhHHHHhh
Confidence 9999999984
No 430
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.56 E-value=0.058 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 431
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.55 E-value=0.058 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 432
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.058 Score=54.78 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 433
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.52 E-value=0.39 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
||+|||+.|||||||+..|+|+-
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCC
Confidence 89999999999999999999863
No 434
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.51 E-value=0.059 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.|+|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999998753
No 435
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.50 E-value=0.062 Score=54.81 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999643
No 436
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.48 E-value=0.059 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999864
No 437
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.44 E-value=0.062 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 438
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.43 E-value=0.063 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 439
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.42 E-value=0.066 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 440
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.41 E-value=0.061 Score=49.11 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 004520 125 ILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~ 145 (747)
|+|.|.|||||||+.+.|..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 441
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.067 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999643
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.37 E-value=0.055 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
.|+|+|++||||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999764
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.36 E-value=0.46 Score=49.65 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 004520 124 RILVLGKTGVGKSATINSIFD 144 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG 144 (747)
.++|.|+.++||||++..+.+
T Consensus 33 ~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999977
No 444
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.35 E-value=0.065 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 445
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.30 E-value=0.07 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 446
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.26 E-value=0.067 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999964
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.24 E-value=0.058 Score=54.83 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
-|+|+|++|+||||++++|++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 448
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.24 E-value=0.068 Score=55.25 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
.++|+|++|+|||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 449
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.23 E-value=0.07 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 589999999999999999999643
No 450
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.22 E-value=0.07 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999964
No 451
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.21 E-value=0.072 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 452
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.21 E-value=0.07 Score=55.12 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 453
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.067 Score=55.88 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
.++|+|++|+|||||++.|.|-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 454
>PRK08118 topology modulation protein; Reviewed
Probab=93.21 E-value=0.068 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
+|+|+|.+|+||||+...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 455
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.20 E-value=0.079 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|+|-.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999964
No 456
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.20 E-value=0.072 Score=54.62 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 589999999999999999999653
No 457
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.17 E-value=0.073 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999643
No 458
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.16 E-value=0.23 Score=57.68 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
-|+|.|+||+||||++++++..
T Consensus 244 lilitGptGSGKTTtL~a~L~~ 265 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSR 265 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 459
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=0.57 Score=45.82 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=62.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCceecCCCCceeeE--EEEEeEEcC--eEEEEEeCCCCCCcccchhhhhHHHHHH
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCI--REVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~~~a~vs~~~~tT~~~--~~~~~~~~G--~~v~LIDTPGl~~~~~~~~~~~~~il~~ 197 (747)
-++-.|+|.-|||||-|+..+..++...- . |.|-.+ -....++.| .++.++||+|-.. .. ..
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmad--c-phtigvefgtriievsgqkiklqiwdtagqer--------fr---av 76 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD--C-PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER--------FR---AV 76 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhc--C-CcccceecceeEEEecCcEEEEEEeecccHHH--------HH---HH
Confidence 46889999999999999998876443221 1 111111 111223334 4678999999521 11 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCC-cccccEEEEEeccCCCC
Q 004520 198 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 255 (747)
Q Consensus 198 ik~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~-~i~k~vIIVLTK~D~l~ 255 (747)
.+.+- .++-..|+|.++.+.+. -..+-.++.+...- .-..-++++-||+|+-.
T Consensus 77 trsyy--rgaagalmvyditrrst---ynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 77 TRSYY--RGAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHh--ccccceeEEEEehhhhh---hhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 22222 25566777766665432 22344455544221 11233456779998753
No 460
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.15 E-value=0.073 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999964
No 461
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.078 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999643
No 462
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.12 E-value=0.078 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999653
No 463
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.12 E-value=0.071 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999964
No 464
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.10 E-value=0.078 Score=53.34 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999643
No 465
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.10 E-value=0.077 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 121 ~~lrIlVVGk~GvGKSSLINsLlG~ 145 (747)
....|+|+|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 466
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.09 E-value=0.08 Score=52.72 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999754
No 467
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.07 E-value=0.076 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999643
No 468
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.07 E-value=0.077 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 469
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.06 E-value=0.075 Score=55.32 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 470
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.078 Score=55.90 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999653
No 471
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.03 E-value=0.065 Score=53.62 Aligned_cols=51 Identities=25% Similarity=0.465 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcee-cCCCCceeeEEEEEeEEcCeEEEEEe
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFID 176 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LID 176 (747)
-|+++|++||||+|+++.|.....-.. .....+|+.... .+.+|..+.|++
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~--~e~~g~dy~fvs 55 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRP--GEVNGVDYHFVS 55 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCC--CCcCCceEEECC
Confidence 489999999999999999987742112 223334443322 233455555543
No 472
>PRK10908 cell division protein FtsE; Provisional
Probab=93.02 E-value=0.078 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 473
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.02 E-value=0.076 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999653
No 474
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.00 E-value=0.076 Score=55.37 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
.++|+|++|+|||||++.|.|-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
No 475
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.00 E-value=0.076 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999964
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.00 E-value=0.08 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 120 ~~~lrIlVVGk~GvGKSSLINsLlG~ 145 (747)
..+..|+|.|.+|+|||||.+.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999999999999864
No 477
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.99 E-value=0.079 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999964
No 478
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.98 E-value=0.078 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999643
No 479
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.98 E-value=0.084 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999964
No 480
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.98 E-value=0.082 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999643
No 481
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=92.97 E-value=0.65 Score=42.53 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=49.4
Q ss_pred EEcCCCCcHHHHHHHHh-------CCCCceec-CCCCceeeEEEEEeEEcCeEEEEEeCCCCCCcccchhhhhHHHHHHH
Q 004520 127 VLGKTGVGKSATINSIF-------DQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 127 VVGk~GvGKSSLINsLl-------G~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~~~~~~~~~~~~~il~~i 198 (747)
+=++.|+||||+.-.|. |.+...++ +....+ .++|||||+.... ....
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------D~IIiDtpp~~~~---------~~~~-- 60 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------DYVVVDLGRSLDE---------VSLA-- 60 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------CEEEEeCCCCcCH---------HHHH--
Confidence 35789999999776663 22222222 111111 7899999997532 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhCCcccccEEEEEec
Q 004520 199 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 250 (747)
Q Consensus 199 k~~I~~~~~DvVL~V~~ld~~t~~~~D~~lLk~L~e~fG~~i~k~vIIVLTK 250 (747)
.+. .+|.++++...+..... .-..+++.+.+. +..-...+.+|+|+
T Consensus 61 --~l~--~aD~vlvvv~~~~~s~~-~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 61 --ALD--QADRVFLVTQQDLPSIR-NAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred --HHH--HcCeEEEEecCChHHHH-HHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 221 34888888766544321 112344444443 21112356677775
No 482
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.96 E-value=0.081 Score=54.76 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|+|...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 689999999999999999999643
No 483
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=92.95 E-value=0.077 Score=55.72 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCce
Q 004520 124 RILVLGKTGVGKSATINSIFDQTKTE 149 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~a~ 149 (747)
-++++|+.|+|||||+++|+|--...
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~ 56 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999965443
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.95 E-value=0.074 Score=58.89 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 004520 125 ILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 125 IlVVGk~GvGKSSLINsLlG~~~ 147 (747)
++++|++|+|||||++.|.|=+.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999999554
No 485
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.078 Score=55.70 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999954
No 486
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.94 E-value=0.063 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999854
No 487
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.92 E-value=0.081 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999643
No 488
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.90 E-value=0.081 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
.++|+|++|+|||||++.|.|-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999985
No 489
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.89 E-value=0.081 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999853
No 490
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.88 E-value=0.079 Score=58.83 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 004520 122 SIRILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 122 ~lrIlVVGk~GvGKSSLINsLlG~ 145 (747)
..+|+|.|+||+|||||+|+|++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc
Confidence 468999999999999999999975
No 491
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.86 E-value=0.091 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 492
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.86 E-value=0.089 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 589999999999999999999753
No 493
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.84 E-value=0.088 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 494
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.84 E-value=0.083 Score=54.58 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 68999999999999999999964
No 495
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.83 E-value=0.088 Score=55.00 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQTK 147 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~~ 147 (747)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999643
No 496
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.80 E-value=0.089 Score=53.25 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999964
No 497
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.78 E-value=0.084 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 498
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.77 E-value=0.086 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQ 145 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~ 145 (747)
+|+|+|.||+||||+...|..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 499
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.76 E-value=0.092 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCc
Q 004520 123 IRILVLGKTGVGKSATINSIFDQTKT 148 (747)
Q Consensus 123 lrIlVVGk~GvGKSSLINsLlG~~~a 148 (747)
=.++|+|++|+|||||++.|.|-...
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 36899999999999999999997543
No 500
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.74 E-value=0.087 Score=55.13 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 004520 124 RILVLGKTGVGKSATINSIFDQT 146 (747)
Q Consensus 124 rIlVVGk~GvGKSSLINsLlG~~ 146 (747)
.++|+|++|+|||||++.|.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999964
Done!