Query 004520
Match_columns 747
No_of_seqs 383 out of 3506
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 18:51:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004520.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1825-1829//hhsearch_pdb/004520hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 1.0 1 1 203.4 15.0 215 121-345 35-254 (262)
2 1h65_A Chloroplast outer envel 1.0 1 1 190.2 17.4 217 121-347 38-258 (270)
3 2hjg_A GTP-binding protein ENG 1.0 1 1 164.0 10.5 202 46-256 75-301 (436)
4 4dcu_A GTP-binding protein ENG 1.0 1 1 161.0 11.2 203 46-256 95-321 (456)
5 1mky_A Probable GTP-binding pr 1.0 1 1 148.5 11.4 201 46-255 74-306 (439)
6 3lxx_A GTPase IMAP family memb 1.0 1 1 145.6 14.7 163 112-287 19-184 (239)
7 3lxw_A GTPase IMAP family memb 1.0 1 1 141.2 14.0 156 120-288 19-179 (247)
8 2xtp_A GTPase IMAP family memb 1.0 1 1 124.9 17.2 152 119-284 19-175 (260)
9 1puj_A YLQF, conserved hypothe 1.0 1 1 123.8 13.4 148 34-186 4-181 (282)
10 3t5d_A Septin-7; GTP-binding p 1.0 1 1 122.9 11.5 131 119-256 5-159 (274)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=1.00 E-value=1 Score=203.44 Aligned_cols=215 Identities=29% Similarity=0.482 Sum_probs=177.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 97199999289996898999995999740048899600599999678494899996999997433102323999999999
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~i~LIDTPGl~d~~~~~~~~~~~il~~Ikk 200 (747)
..++|+++|.+|+|||||+|+|++...+.++...++|.........+.+..+.|+||||+.+... ..+.....+.+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~----~~~~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY----VNHQALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE----ECHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCC----CHHHHHHHHHH
T ss_conf 87589998999999999999982998742378898502369999987894699998989887531----16999999999
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCHHHHHHH
Q ss_conf 88419998899998236755887809999999998277665309999966689899998898754034653270999999
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQR 280 (747)
Q Consensus 201 ~I~~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLTKaD~l~pe~~~~~~~sie~~i~q~~~~lqe~ 280 (747)
++....+|+++||++++.......+..+++.+.+.++...++++++|+||+|..++++ ..+++++++....+++.
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~-----~~~e~~~~~~~~~l~~~ 185 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLLKT 185 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT-----CCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHCCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHH
T ss_conf 9853798989999748877899899999999999856352437899996733479877-----65999998604999999
Q ss_pred HHHHHCCCCC-----CCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9998302697-----5501320027742246567303888002399888221101122247763112211
Q 004520 281 IHQAVSDARL-----ENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDS 345 (747)
Q Consensus 281 I~q~~~d~~l-----~~pv~LVen~p~c~~N~~ge~vLPn~q~W~~~Ll~~c~s~ki~~eA~~~lk~~~~ 345 (747)
+.++.+.... ..|+.++++.+.|..|..|+.+||++++|++.|+..... .+.+..++.+.+++.
T Consensus 186 i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~ 254 (262)
T 3def_A 186 IRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD-VATNQRKAIHVDAAA 254 (262)
T ss_dssp HHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHH-HHTSCSCCEEC----
T ss_pred HHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCEEHHHHHHHHHH-HHHCCCCCEECCHHH
T ss_conf 999727452235356688899867887788989776799998609999999999-995799844215777
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=1.00 E-value=1 Score=190.24 Aligned_cols=217 Identities=29% Similarity=0.494 Sum_probs=171.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 97199999289996898999995999740048899600599999678494899996999997433102323999999999
Q 004520 121 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 200 (747)
Q Consensus 121 ~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~i~LIDTPGl~d~~~~~~~~~~~il~~Ikk 200 (747)
..++|+++|.+|+|||||+|+|++.....++...++|.....+.....+..+.||||||+.+.... .......+.+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~----~~~~~~~i~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI----NDMALNIIKS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE----CHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCC----HHHHHHHHHH
T ss_conf 975999988999989999999959986322688986322689998649967999989888887525----6999999999
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCHHHHHHH
Q ss_conf 88419998899998236755887809999999998277665309999966689899998898754034653270999999
Q 004520 201 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQR 280 (747)
Q Consensus 201 ~I~~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLTKaD~l~pe~~~~~~~sie~~i~q~~~~lqe~ 280 (747)
++....+|+++||++++..+....+..+++.+.+.++...|.++++|+||+|..++++ .++++|+++....+++.
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~-----~~~~~~~~~~~~~l~~~ 188 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQV 188 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG-----CCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHH
T ss_conf 8633799999999848888688899999999998727002267899997866678678-----88999999879999999
Q ss_pred HHHHHCCCCCC----CHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99983026975----50132002774224656730388800239988822110112224776311221112
Q 004520 281 IHQAVSDARLE----NQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIE 347 (747)
Q Consensus 281 I~q~~~d~~l~----~pv~LVen~p~c~~N~~ge~vLPn~q~W~~~Ll~~c~s~ki~~eA~~~lk~~~~~~ 347 (747)
+++..+..... .|+.++++.+.|.+|..+++++|+.+.|.+.|+..-.. .+..+.+.++-....+.
T Consensus 189 ~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~-~~~~~~~~l~~d~~~~~ 258 (270)
T 1h65_A 189 VRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITE-VALNKSESIFVDKNLID 258 (270)
T ss_dssp HHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHH-HHTSSSCCEECCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHH-HHHCCCCCEECCHHHHC
T ss_conf 99850145531010398799817884304688866778997727899999999-98667986540788836
No 3
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=163.97 Aligned_cols=202 Identities=13% Similarity=0.127 Sum_probs=135.5
Q ss_pred CHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCC--------CCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC----
Q ss_conf 3586400254899998665899988799999998026--------4333212420378873100048999762001----
Q 004520 46 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEA---- 113 (747)
Q Consensus 46 ~~~~ki~~~dvillvlDaR~g~s~~d~~vaqvL~rl~--------lad~~~~~~~~~~~~~lg~~~a~~iA~~~~~---- 113 (747)
+....++.+|+++|++|++.|.+..+..+++++++.+ |+|.........++++++++....+++.++.
T Consensus 75 ~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 75 QAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGD 154 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHH
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 99999974889999984788999799999999997399879999896686435667889871899769996768989599
Q ss_pred ------------CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCC
Q ss_conf ------------89999999719999928999689899999599974004889960059999967849489999699999
Q 004520 114 ------------TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181 (747)
Q Consensus 114 ------------~~~~~~~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~i~LIDTPGl~ 181 (747)
.........++|+++|.+|||||||+|++++.....++..+++|++.......+++..+.||||||+.
T Consensus 155 L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~ 234 (436)
T 2hjg_A 155 LLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 234 (436)
T ss_dssp HHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCC
T ss_conf 99999875673211111246727999757998877999997287742314899961613689999899189999798847
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf 74331023239-9999999988419998899998236755887809999999998277665309999966689899
Q 004520 182 PSCVRNVKRNR-KIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 182 d~~~~~~~~~~-~il~~Ikk~I~~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLTKaD~l~p 256 (747)
+.......... .....+ .++. .+|++++|+++... ....+..++..+.+. .+++++|+||||....
T Consensus 235 ~~~~~~~~~e~~~~~~~~-~~~~--~ad~~llv~D~~~~-~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 235 KKGKVYETTEKYSVLRAL-KAID--RSEVVAVVLDGEEG-IIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp CBTTBCCCCSHHHHHHHH-HHHH--HCSEEEEEEETTTC-CCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCC
T ss_pred CCCCCCCHHHHHHHHHHH-HHHH--HCCEEEEEECCCCC-CCHHHHHHHHHHHHC-----CCCEEEEEECCCCCCC
T ss_conf 075544217899999999-9887--59999999828767-768999999999983-----9967999989127886
No 4
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=1.00 E-value=1 Score=161.00 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=136.9
Q ss_pred CHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCC--------CCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC----
Q ss_conf 3586400254899998665899988799999998026--------4333212420378873100048999762001----
Q 004520 46 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEA---- 113 (747)
Q Consensus 46 ~~~~ki~~~dvillvlDaR~g~s~~d~~vaqvL~rl~--------lad~~~~~~~~~~~~~lg~~~a~~iA~~~~~---- 113 (747)
.....++.+|+++|++|++.+.++.+..+++++++.+ |+|.........++++++++....+++.++.
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 99866865999999971788997578999999997599889999792240246667999975999548863102543478
Q ss_pred ------------CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCC
Q ss_conf ------------89999999719999928999689899999599974004889960059999967849489999699999
Q 004520 114 ------------TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 181 (747)
Q Consensus 114 ------------~~~~~~~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~i~LIDTPGl~ 181 (747)
.........++|+++|.+|+|||||+|++++.....++..+++|.+.........+..+.||||||+.
T Consensus 175 L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 175 LLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp HHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCC
T ss_conf 99998764343212333455514677328999878999998577850257999748877999999899639999899998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf 743310232399999999988419998899998236755887809999999998277665309999966689899
Q 004520 182 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 256 (747)
Q Consensus 182 d~~~~~~~~~~~il~~Ikk~I~~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLTKaD~l~p 256 (747)
+..................++. .+|++++|++.... ....+..++..+.+. .+++++|+||||+...
T Consensus 255 ~~~~~~~~~e~~~~~~~~~~~~--~ad~~llviD~~~~-~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 255 KKGKVYETTEKYSVLRALKAID--RSEVVAVVLDGEEG-IIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDK 321 (456)
T ss_dssp TBTTBCCCCSHHHHHHHHHHHH--HCSEEEEEEETTTC-CCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEEECCCC-CCHHHHHHHHHHHHC-----CCCEEEEEECHHCCCC
T ss_conf 6766423788999999999885--39999999958877-679999999999983-----9987999997444897
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=1.00 E-value=1 Score=148.51 Aligned_cols=201 Identities=16% Similarity=0.200 Sum_probs=131.0
Q ss_pred CHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCC--------CCCCCCC-CCHH-HHHHHHCCHHHHHHHHHCCC--
Q ss_conf 3586400254899998665899988799999998026--------4333212-4203-78873100048999762001--
Q 004520 46 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRA-GESD-MKMVNLRSDRTRAIAREQEA-- 113 (747)
Q Consensus 46 ~~~~ki~~~dvillvlDaR~g~s~~d~~vaqvL~rl~--------lad~~~~-~~~~-~~~~~lg~~~a~~iA~~~~~-- 113 (747)
+....++.+|+++|++|++.+.+..+..+++++++.+ |+|.... .... .+++++++....++++.++.
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 99999986999999987998989799999999987599989999598984336778999999638997799966478997
Q ss_pred -------------CC-C--C--CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEEEEEECCEEEEEE
Q ss_conf -------------89-9--9--9999719999928999689899999599974004889960059999967849489999
Q 004520 114 -------------TG-I--P--DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFI 175 (747)
Q Consensus 114 -------------~~-~--~--~~~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~i~LI 175 (747)
.. . . .....++|+++|++|||||||+|.|+|.....+++.+++|++.......++|..+.++
T Consensus 154 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~ 233 (439)
T 1mky_A 154 DTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 233 (439)
T ss_dssp HHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEES
T ss_pred HHHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 99999999855532200010012346716999788999879999998387652468999974873579999999789999
Q ss_pred ECCCCCCCCCCHHHHHHHHH--HHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 69999974331023239999--9999988419998899998236755887809999999998277665309999966689
Q 004520 176 DTPGFLPSCVRNVKRNRKIM--LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSS 253 (747)
Q Consensus 176 DTPGl~d~~~~~~~~~~~il--~~Ikk~I~~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLTKaD~ 253 (747)
||||+....... ....+.. ......+. .++++++|++.... ....+..+...+... .+++++|+||||.
T Consensus 234 Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~--~ad~vllv~d~~~~-~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl 304 (439)
T 1mky_A 234 DTAGLRRKSRVE-PRTVEKYSNYRVVDSIE--KADVVVIVLDATQG-ITRQDQRMAGLMERR-----GRASVVVFNKWDL 304 (439)
T ss_dssp SCSCC------------CCSCCHHHHHHHH--HCSEEEEEEETTTC-CCHHHHHHHHHHHHT-----TCEEEEEEECGGG
T ss_pred ECCCCCCCCCCC-HHHHHHHHHHHHHHHHH--HCCEEEEEEECCCC-CCHHHHHHHHHHHHC-----CCCEEEEEECCCC
T ss_conf 998976445565-03599999999998885--39999999858878-898999999999982-----9988999989028
Q ss_pred CC
Q ss_conf 89
Q 004520 254 TL 255 (747)
Q Consensus 254 l~ 255 (747)
..
T Consensus 305 ~~ 306 (439)
T 1mky_A 305 VV 306 (439)
T ss_dssp ST
T ss_pred CC
T ss_conf 98
No 6
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=1.00 E-value=1 Score=145.64 Aligned_cols=163 Identities=20% Similarity=0.252 Sum_probs=119.7
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECC-CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHH
Q ss_conf 01899999997199999289996898999995999740048-89960059999967849489999699999743310232
Q 004520 112 EATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDA-FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKR 190 (747)
Q Consensus 112 ~~~~~~~~~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~-~~~tT~~~~~~~~~~~G~~i~LIDTPGl~d~~~~~~~~ 190 (747)
...........++|+|+|.+|+|||||+|+|++......+. ..++|..+......+.+..+.|+||||+.+.....
T Consensus 19 ~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~--- 95 (239)
T 3lxx_A 19 GPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN--- 95 (239)
T ss_dssp ---------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C---
T ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCH---
T ss_conf 67767899996599998899998999999982998676589988530368888888679669999799855788887---
Q ss_pred HHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 39999999998841--9998899998236755887809999999998277665309999966689899998898754034
Q 004520 191 NRKIMLSVKKFIRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYES 268 (747)
Q Consensus 191 ~~~il~~Ikk~I~~--~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLTKaD~l~pe~~~~~~~sie~ 268 (747)
......+.+++.. ..+|++++|++++..+. .+...+..+.+.|+...+.|+++|+||+|.+... .+++
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~-------~~~~ 165 (239)
T 3lxx_A 96 -AETSKEIIRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDT-------NLHD 165 (239)
T ss_dssp -HHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------
T ss_pred -HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCH--HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-------CHHH
T ss_conf -99999999999846999809999922899999--9999999999885230346099999677668864-------5999
Q ss_pred HHHHCHHHHHHHHHHHHCC
Q ss_conf 6532709999999998302
Q 004520 269 YVTQCTDLVQQRIHQAVSD 287 (747)
Q Consensus 269 ~i~q~~~~lqe~I~q~~~d 287 (747)
++......+++.+.+|...
T Consensus 166 ~i~~~~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 166 YLREAPEDIQDLMDIFGDR 184 (239)
T ss_dssp -----CHHHHHHHHHHSSS
T ss_pred HHHHCHHHHHHHHHHCCCE
T ss_conf 9986649999999974998
No 7
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=1.00 E-value=1 Score=141.20 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=114.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCEEC-CCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99719999928999689899999599974004-88996005999996784948999969999974331023239999999
Q 004520 120 DFSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 198 (747)
Q Consensus 120 ~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~i~LIDTPGl~d~~~~~~~~~~~il~~I 198 (747)
...++|+|+|.||+|||||+|+|++...+.++ ...++|..+......+.+..+.|+||||+.+..... .+.....+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~~~~~~~i 95 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK---TDPGCEER 95 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH---HSTTSHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCC---HHHHHHHH
T ss_conf 995089998999981999999983998765568999806617999999789579999897977777771---88999999
Q ss_pred HHHH--HCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCCCCHHHHHHHC-H
Q ss_conf 9988--419998899998236755887809999999998277665-30999996668989999889875403465327-0
Q 004520 199 KKFI--RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW-FNTILVMTHSSSTLPEGSSGYPFSYESYVTQC-T 274 (747)
Q Consensus 199 kk~I--~~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~-k~vIIVLTKaD~l~pe~~~~~~~sie~~i~q~-~ 274 (747)
.+++ ....+|++|+|++++..+ ..+..+++.+.+.||...+ .+++++.||.|+.. ..+++++.+. .
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~--------~~~~~~l~~~~~ 165 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFT--AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG--------GSLHDYVSNTEN 165 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCC--HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCCC
T ss_pred HHHHHHCCCCCCEEEEEEECCCCC--HHHHHHHHHHHHHHCHHHHCCEEEEEECHHHCCC--------CCHHHHHHHCCC
T ss_conf 999984277887899997679788--8999999999998481322667999983575389--------979999861464
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999983026
Q 004520 275 DLVQQRIHQAVSDA 288 (747)
Q Consensus 275 ~~lqe~I~q~~~d~ 288 (747)
..++..+..|...+
T Consensus 166 ~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 166 RALRELVAECGGRV 179 (247)
T ss_dssp HHHHHHHHHTTTCE
T ss_pred HHHHHHHHHCCCEE
T ss_conf 98999999759849
No 8
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=1.00 E-value=1 Score=124.91 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=106.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCC-CEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9997199999289996898999995999740048899-600599999678494899996999997433102323999999
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQP-ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 197 (747)
Q Consensus 119 ~~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~~~~-tT~~~~~~~~~~~G~~i~LIDTPGl~d~~~~~~~~~~~il~~ 197 (747)
....++|+|+|.+|+|||||+|+|++...+.++..+. +|..+......+.+..+.||||||+.+.... ...+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~----~~~~~~~ 94 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH----CEALYKE 94 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC----CHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCC----HHHHHHH
T ss_conf 999549999889999889999998499876557788850056678778868988999989199998777----7999999
Q ss_pred HHHHHH--CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCCCCCCCCCCCHHHHHHHC-
Q ss_conf 999884--1999889999823675588780999999999827766530999996-668989999889875403465327-
Q 004520 198 VKKFIR--RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT-HSSSTLPEGSSGYPFSYESYVTQC- 273 (747)
Q Consensus 198 Ikk~I~--~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLT-KaD~l~pe~~~~~~~sie~~i~q~- 273 (747)
+.+++. ...+|++++|++++... ..+..+++.+.+.|+...+.+.++|+| |+|... . .+..++...
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~-~-------~~~~~i~~~~ 164 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG-G-------SLMDYMHDSD 164 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCC--HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT-C-------CHHHHHHHCC
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCC--HHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCC-C-------CHHHHHHHCC
T ss_conf 9999985599985899997188789--8999999999998281102347999984643687-5-------5999998204
Q ss_pred HHHHHHHHHHH
Q ss_conf 09999999998
Q 004520 274 TDLVQQRIHQA 284 (747)
Q Consensus 274 ~~~lqe~I~q~ 284 (747)
...+++.+.++
T Consensus 165 ~~~~~~~~~~~ 175 (260)
T 2xtp_A 165 NKALSKLVAAC 175 (260)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 49999999995
No 9
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=1.00 E-value=1 Score=123.80 Aligned_cols=148 Identities=21% Similarity=0.179 Sum_probs=104.5
Q ss_pred CCCCCCCHHHHHCHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCC------CCCCCCCCC--HHHHHHH-HCCH--
Q ss_conf 9999884175313586400254899998665899988799999998026------433321242--0378873-1000--
Q 004520 34 SPHNQNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH------LATLIRAGE--SDMKMVN-LRSD-- 102 (747)
Q Consensus 34 ~~~~~~l~~~~k~~~~ki~~~dvillvlDaR~g~s~~d~~vaqvL~rl~------lad~~~~~~--~~~~~~~-lg~~-- 102 (747)
.-.+++|.+..+++.+.++.+|++++++|+|.|.++.+..+.+++.... |+|...... .+.+++. .++.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i 83 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSL 83 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 48816899999999988856999999975889876579899999779997999988004998999999999986699389
Q ss_pred -----------HHHH----HHHHC----CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEE
Q ss_conf -----------4899----97620----0189999999719999928999689899999599974004889960059999
Q 004520 103 -----------RTRA----IAREQ----EATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREV 163 (747)
Q Consensus 103 -----------~a~~----iA~~~----~~~~~~~~~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~ 163 (747)
.... ..... ...+ .....++++++|.|||||||++|+|++...+.++..+++|+..+.+
T Consensus 84 ~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~--~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 161 (282)
T 1puj_A 84 SINSVNGQGLNQIVPASKEILQEKFDRMRAKG--VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161 (282)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTT--CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCEEEEEECCCCCHHHHHHHHHCCCEEECCCCCCEEEEEEEE
T ss_conf 99898840499999999999999998887537--7777726999816987467789998547601048999703346899
Q ss_pred EEEECCEEEEEEECCCCCCCCCC
Q ss_conf 96784948999969999974331
Q 004520 164 KGSVNGIKVTFIDTPGFLPSCVR 186 (747)
Q Consensus 164 ~~~~~G~~i~LIDTPGl~d~~~~ 186 (747)
.. +..+.++||||+......
T Consensus 162 ~~---~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 162 KV---GKELELLDTPGILWPKFE 181 (282)
T ss_dssp EE---TTTEEEEECCCCCCSCCC
T ss_pred EE---CCCEEEEECCCCCCCCCC
T ss_conf 93---898999989293888777
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=1.00 E-value=1 Score=122.92 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=82.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECC-------CCCCEEEEEEEEEEECC--EEEEEEECCCCCCCCCCHHH
Q ss_conf 9997199999289996898999995999740048-------89960059999967849--48999969999974331023
Q 004520 119 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDA-------FQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVK 189 (747)
Q Consensus 119 ~~~~lrIlIVGktGvGKSTLINsLlG~~~a~vs~-------~~~tT~~~~~~~~~~~G--~~i~LIDTPGl~d~~~~~~~ 189 (747)
.++.++|+|+|.+|+|||||+|+|++...+.... .+..+.+.........| ..+.|+||||+++..... .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~-~ 83 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS-N 83 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT-T
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCH-H
T ss_conf 754799999879999799999888677766567788444668844788889998148828999999788865543505-6
Q ss_pred HHHHHH----HHHHHHHH-----------CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 239999----99999884-----------199988999982367558878099999999982776653099999666898
Q 004520 190 RNRKIM----LSVKKFIR-----------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 254 (747)
Q Consensus 190 ~~~~il----~~Ikk~I~-----------~~~~dvVLlVi~ld~~t~~~~D~~lLk~L~k~fG~~i~k~vIIVLTKaD~l 254 (747)
.-..+. ..+..++. ..++|+++|++..........+..+++.+.. ..|+|+|+||+|.+
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC------CCCEEEEEECCCCC
T ss_conf 489999999999999987640223233467743589999658888888779999999865------68889998536878
Q ss_pred CC
Q ss_conf 99
Q 004520 255 LP 256 (747)
Q Consensus 255 ~p 256 (747)
.+
T Consensus 158 ~~ 159 (274)
T 3t5d_A 158 TP 159 (274)
T ss_dssp CH
T ss_pred CH
T ss_conf 99
Done!